APA03_RS00060	PWY-2201	folate transformations I
APA03_RS00060	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS00060	PWY-6167	flavin biosynthesis II (archaea)
APA03_RS00085	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APA03_RS00085	PWY-5368	dimorphecolate biosynthesis
APA03_RS00085	PWY-5995	linoleate biosynthesis I (plants)
APA03_RS00085	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APA03_RS00085	PWY-6803	phosphatidylcholine acyl editing
APA03_RS00085	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APA03_RS00085	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APA03_RS00085	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APA03_RS00085	PWY-7470	phosphatidylcholine biosynthesis VII
APA03_RS00085	PWY-7618	ricinoleate biosynthesis
APA03_RS00095	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APA03_RS00095	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APA03_RS00095	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APA03_RS00145	PWY-2941	L-lysine biosynthesis II
APA03_RS00145	PWY-2942	L-lysine biosynthesis III
APA03_RS00145	PWY-5097	L-lysine biosynthesis VI
APA03_RS00145	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS00145	PWY-6559	spermidine biosynthesis II
APA03_RS00145	PWY-6562	norspermidine biosynthesis
APA03_RS00145	PWY-7153	grixazone biosynthesis
APA03_RS00145	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS00160	PWY-3781	aerobic respiration I (cytochrome c)
APA03_RS00160	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APA03_RS00160	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APA03_RS00160	PWY-5690	TCA cycle II (plants and fungi)
APA03_RS00160	PWY-6728	methylaspartate cycle
APA03_RS00160	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APA03_RS00160	PWY-7254	TCA cycle VII (acetate-producers)
APA03_RS00160	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APA03_RS00165	PWY-3781	aerobic respiration I (cytochrome c)
APA03_RS00165	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APA03_RS00165	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APA03_RS00165	PWY-5690	TCA cycle II (plants and fungi)
APA03_RS00165	PWY-6728	methylaspartate cycle
APA03_RS00165	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APA03_RS00165	PWY-7254	TCA cycle VII (acetate-producers)
APA03_RS00165	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APA03_RS00180	PWY-1042	glycolysis IV (plant cytosol)
APA03_RS00180	PWY-5484	glycolysis II (from fructose 6-phosphate)
APA03_RS00180	PWY-6886	1-butanol autotrophic biosynthesis
APA03_RS00180	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS00180	PWY-7003	glycerol degradation to butanol
APA03_RS00185	PWY-1042	glycolysis IV (plant cytosol)
APA03_RS00185	PWY-5484	glycolysis II (from fructose 6-phosphate)
APA03_RS00185	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS00185	PWY-7003	glycerol degradation to butanol
APA03_RS00190	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS00190	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS00190	PWY-7560	methylerythritol phosphate pathway II
APA03_RS00200	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APA03_RS00200	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
APA03_RS00210	PWY-4041	&gamma;-glutamyl cycle
APA03_RS00210	PWY-5826	hypoglycin biosynthesis
APA03_RS00240	PWY-6906	chitin derivatives degradation
APA03_RS00240	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
APA03_RS00240	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
APA03_RS00275	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APA03_RS00275	PWY-6148	tetrahydromethanopterin biosynthesis
APA03_RS00275	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APA03_RS00275	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APA03_RS00285	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APA03_RS00290	PWY-7205	CMP phosphorylation
APA03_RS00310	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
APA03_RS00385	PWY-6871	3-methylbutanol biosynthesis
APA03_RS00410	PWY-6605	adenine and adenosine salvage II
APA03_RS00410	PWY-6610	adenine and adenosine salvage IV
APA03_RS00460	PWY-3781	aerobic respiration I (cytochrome c)
APA03_RS00460	PWY-4521	arsenite oxidation I (respiratory)
APA03_RS00460	PWY-6692	Fe(II) oxidation
APA03_RS00460	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APA03_RS00460	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
APA03_RS00505	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APA03_RS00505	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APA03_RS00505	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APA03_RS00525	PWY-5686	UMP biosynthesis
APA03_RS00595	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS00605	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS00615	PWY-6700	queuosine biosynthesis
APA03_RS00775	PWY-7142	cyanide detoxification II
APA03_RS00980	PWY-6098	diploterol and cycloartenol biosynthesis
APA03_RS00980	PWY-7072	hopanoid biosynthesis (bacteria)
APA03_RS01005	PWY-5152	leucodelphinidin biosynthesis
APA03_RS01005	PWY-5515	L-arabinose degradation II
APA03_RS01005	PWY-6693	galactose degradation IV
APA03_RS01015	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APA03_RS01100	PWY-6700	queuosine biosynthesis
APA03_RS01105	PWY-6700	queuosine biosynthesis
APA03_RS01110	PWY-6700	queuosine biosynthesis
APA03_RS01130	PWY-2201	folate transformations I
APA03_RS01130	PWY-3841	folate transformations II
APA03_RS01135	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APA03_RS01135	PWY-2201	folate transformations I
APA03_RS01135	PWY-3841	folate transformations II
APA03_RS01135	PWY-5030	L-histidine degradation III
APA03_RS01135	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS01135	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APA03_RS01270	PWY-5686	UMP biosynthesis
APA03_RS01315	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APA03_RS01315	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APA03_RS01315	PWY-6897	thiamin salvage II
APA03_RS01315	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APA03_RS01315	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APA03_RS01315	PWY-7356	thiamin salvage IV (yeast)
APA03_RS01315	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APA03_RS01395	PWY-4041	&gamma;-glutamyl cycle
APA03_RS01395	PWY-5826	hypoglycin biosynthesis
APA03_RS01470	PWY-2941	L-lysine biosynthesis II
APA03_RS01470	PWY-2942	L-lysine biosynthesis III
APA03_RS01470	PWY-5097	L-lysine biosynthesis VI
APA03_RS01475	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APA03_RS01475	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APA03_RS01485	PWY-6123	inosine-5'-phosphate biosynthesis I
APA03_RS01485	PWY-6124	inosine-5'-phosphate biosynthesis II
APA03_RS01485	PWY-7234	inosine-5'-phosphate biosynthesis III
APA03_RS01545	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS01590	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS01665	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS01665	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS01810	PWY-5747	2-methylcitrate cycle II
APA03_RS01815	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APA03_RS01815	PWY-7118	chitin degradation to ethanol
APA03_RS01865	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APA03_RS01875	PWY-3341	L-proline biosynthesis III
APA03_RS01875	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APA03_RS01880	PWY-5381	pyridine nucleotide cycling (plants)
APA03_RS01880	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APA03_RS01890	PWY-6825	phosphatidylcholine biosynthesis V
APA03_RS01905	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APA03_RS01910	PWY-5101	L-isoleucine biosynthesis II
APA03_RS01910	PWY-5103	L-isoleucine biosynthesis III
APA03_RS01910	PWY-5104	L-isoleucine biosynthesis IV
APA03_RS01910	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APA03_RS01910	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APA03_RS01910	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APA03_RS01910	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS01945	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APA03_RS01945	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APA03_RS01950	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS01975	PWY-5129	sphingolipid biosynthesis (plants)
APA03_RS01985	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS01985	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS01985	PWY-7560	methylerythritol phosphate pathway II
APA03_RS02015	PWY-7560	methylerythritol phosphate pathway II
APA03_RS02140	PWY-6902	chitin degradation II
APA03_RS02215	PWY-5913	TCA cycle VI (obligate autotrophs)
APA03_RS02215	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APA03_RS02215	PWY-6638	sulfolactate degradation III
APA03_RS02215	PWY-6642	(<i>R</i>)-cysteate degradation
APA03_RS02215	PWY-6643	coenzyme M biosynthesis II
APA03_RS02215	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APA03_RS02215	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APA03_RS02215	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APA03_RS02245	PWY-5667	CDP-diacylglycerol biosynthesis I
APA03_RS02245	PWY-5981	CDP-diacylglycerol biosynthesis III
APA03_RS02270	PWY-6967	methylamine degradation I
APA03_RS02285	PWY-6967	methylamine degradation I
APA03_RS02765	PWY-2201	folate transformations I
APA03_RS02765	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS02930	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APA03_RS02930	PWY-7494	choline degradation IV
APA03_RS03110	PWY-1042	glycolysis IV (plant cytosol)
APA03_RS03110	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APA03_RS03110	PWY-5484	glycolysis II (from fructose 6-phosphate)
APA03_RS03110	PWY-5723	Rubisco shunt
APA03_RS03110	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APA03_RS03110	PWY-6886	1-butanol autotrophic biosynthesis
APA03_RS03110	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS03110	PWY-7003	glycerol degradation to butanol
APA03_RS03110	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APA03_RS03110	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APA03_RS03145	PWY-101	photosynthesis light reactions
APA03_RS03145	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APA03_RS03150	PWY-5913	TCA cycle VI (obligate autotrophs)
APA03_RS03150	PWY-6549	L-glutamine biosynthesis III
APA03_RS03150	PWY-6728	methylaspartate cycle
APA03_RS03150	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APA03_RS03150	PWY-7124	ethylene biosynthesis V (engineered)
APA03_RS03150	PWY-7254	TCA cycle VII (acetate-producers)
APA03_RS03150	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APA03_RS03180	PWY-381	nitrate reduction II (assimilatory)
APA03_RS03180	PWY-5675	nitrate reduction V (assimilatory)
APA03_RS03180	PWY-6549	L-glutamine biosynthesis III
APA03_RS03180	PWY-6963	ammonia assimilation cycle I
APA03_RS03180	PWY-6964	ammonia assimilation cycle II
APA03_RS03210	PWY-5344	L-homocysteine biosynthesis
APA03_RS03230	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APA03_RS03230	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APA03_RS03230	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APA03_RS03230	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APA03_RS03240	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APA03_RS03240	PWY-6148	tetrahydromethanopterin biosynthesis
APA03_RS03240	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APA03_RS03240	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APA03_RS03255	PWY-6012	acyl carrier protein metabolism I
APA03_RS03255	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APA03_RS03290	PWY-5667	CDP-diacylglycerol biosynthesis I
APA03_RS03290	PWY-5981	CDP-diacylglycerol biosynthesis III
APA03_RS03295	PWY-7294	xylose degradation IV
APA03_RS03295	PWY-7295	L-arabinose degradation IV
APA03_RS03295	PWY-7560	methylerythritol phosphate pathway II
APA03_RS03320	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APA03_RS03320	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APA03_RS03320	PWY-5989	stearate biosynthesis II (bacteria and plants)
APA03_RS03320	PWY-5994	palmitate biosynthesis I (animals and fungi)
APA03_RS03320	PWY-6113	superpathway of mycolate biosynthesis
APA03_RS03320	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APA03_RS03320	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APA03_RS03320	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APA03_RS03320	PWY-7663	gondoate biosynthesis (anaerobic)
APA03_RS03320	PWY-7664	oleate biosynthesis IV (anaerobic)
APA03_RS03320	PWYG-321	mycolate biosynthesis
APA03_RS03335	PWY-5386	methylglyoxal degradation I
APA03_RS03365	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS03365	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS03465	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS03545	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APA03_RS03545	PWY-6853	ethylene biosynthesis II (microbes)
APA03_RS03545	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APA03_RS03560	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APA03_RS03560	PWY-7118	chitin degradation to ethanol
APA03_RS03590	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APA03_RS03590	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APA03_RS03590	PWY-6268	adenosylcobalamin salvage from cobalamin
APA03_RS03590	PWY-6269	adenosylcobalamin salvage from cobinamide II
APA03_RS03665	PWY-4981	L-proline biosynthesis II (from arginine)
APA03_RS03665	PWY-4984	urea cycle
APA03_RS03665	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS03690	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APA03_RS03690	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APA03_RS03690	PWY-6416	quinate degradation II
APA03_RS03690	PWY-6707	gallate biosynthesis
APA03_RS03695	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APA03_RS03695	PWY-5389	3-methylthiopropanoate biosynthesis
APA03_RS03705	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APA03_RS03705	PWY-6167	flavin biosynthesis II (archaea)
APA03_RS03705	PWY-6168	flavin biosynthesis III (fungi)
APA03_RS03760	PWY-6936	seleno-amino acid biosynthesis
APA03_RS03820	PWY-5686	UMP biosynthesis
APA03_RS03825	PWY-5686	UMP biosynthesis
APA03_RS03830	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APA03_RS03850	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APA03_RS03855	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APA03_RS03860	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APA03_RS03860	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APA03_RS03875	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APA03_RS03890	PWY-5386	methylglyoxal degradation I
APA03_RS03935	PWY-5669	phosphatidylethanolamine biosynthesis I
APA03_RS03955	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APA03_RS03955	PWY-6164	3-dehydroquinate biosynthesis I
APA03_RS03970	PWY-4381	fatty acid biosynthesis initiation I
APA03_RS03970	PWY-5743	3-hydroxypropanoate cycle
APA03_RS03970	PWY-5744	glyoxylate assimilation
APA03_RS03970	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APA03_RS03970	PWY-6679	jadomycin biosynthesis
APA03_RS03970	PWY-6722	candicidin biosynthesis
APA03_RS03970	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APA03_RS03980	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APA03_RS04000	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APA03_RS04000	PWY-5368	dimorphecolate biosynthesis
APA03_RS04000	PWY-5995	linoleate biosynthesis I (plants)
APA03_RS04000	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APA03_RS04000	PWY-6803	phosphatidylcholine acyl editing
APA03_RS04000	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APA03_RS04000	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APA03_RS04000	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APA03_RS04000	PWY-7470	phosphatidylcholine biosynthesis VII
APA03_RS04000	PWY-7618	ricinoleate biosynthesis
APA03_RS04005	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APA03_RS04005	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APA03_RS04010	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APA03_RS04010	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APA03_RS04030	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APA03_RS04030	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APA03_RS04050	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APA03_RS04050	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APA03_RS04330	PWY-6654	phosphopantothenate biosynthesis III
APA03_RS04345	PWY-3162	L-tryptophan degradation V (side chain pathway)
APA03_RS04345	PWY-5057	L-valine degradation II
APA03_RS04345	PWY-5076	L-leucine degradation III
APA03_RS04345	PWY-5078	L-isoleucine degradation II
APA03_RS04345	PWY-5079	L-phenylalanine degradation III
APA03_RS04345	PWY-5082	L-methionine degradation III
APA03_RS04345	PWY-5480	pyruvate fermentation to ethanol I
APA03_RS04345	PWY-5486	pyruvate fermentation to ethanol II
APA03_RS04345	PWY-5751	phenylethanol biosynthesis
APA03_RS04345	PWY-6313	serotonin degradation
APA03_RS04345	PWY-6333	acetaldehyde biosynthesis I
APA03_RS04345	PWY-6342	noradrenaline and adrenaline degradation
APA03_RS04345	PWY-6587	pyruvate fermentation to ethanol III
APA03_RS04345	PWY-6802	salidroside biosynthesis
APA03_RS04345	PWY-6871	3-methylbutanol biosynthesis
APA03_RS04345	PWY-7013	L-1,2-propanediol degradation
APA03_RS04345	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS04345	PWY-7118	chitin degradation to ethanol
APA03_RS04345	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APA03_RS04355	PWY-3821	galactose degradation III
APA03_RS04355	PWY-6317	galactose degradation I (Leloir pathway)
APA03_RS04355	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APA03_RS04355	PWY-6527	stachyose degradation
APA03_RS04355	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APA03_RS04355	PWY-7344	UDP-D-galactose biosynthesis
APA03_RS04365	PWY-2941	L-lysine biosynthesis II
APA03_RS04365	PWY-2942	L-lysine biosynthesis III
APA03_RS04365	PWY-5097	L-lysine biosynthesis VI
APA03_RS04370	PWY-4983	L-citrulline-nitric oxide cycle
APA03_RS04370	PWY-4984	urea cycle
APA03_RS04370	PWY-5	canavanine biosynthesis
APA03_RS04370	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS04370	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS04385	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APA03_RS04410	PWY-7651	heparan sulfate degradation
APA03_RS04415	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APA03_RS04415	PWY-5723	Rubisco shunt
APA03_RS04420	PWY-6825	phosphatidylcholine biosynthesis V
APA03_RS04425	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APA03_RS04425	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APA03_RS04430	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APA03_RS04430	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APA03_RS04430	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APA03_RS04800	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS04960	PWY-1042	glycolysis IV (plant cytosol)
APA03_RS04960	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APA03_RS04960	PWY-5484	glycolysis II (from fructose 6-phosphate)
APA03_RS04960	PWY-5723	Rubisco shunt
APA03_RS04960	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APA03_RS04960	PWY-6886	1-butanol autotrophic biosynthesis
APA03_RS04960	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS04960	PWY-7003	glycerol degradation to butanol
APA03_RS04960	PWY-7124	ethylene biosynthesis V (engineered)
APA03_RS04960	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APA03_RS04975	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS04975	PWY-5686	UMP biosynthesis
APA03_RS04975	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS04980	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS04980	PWY-5686	UMP biosynthesis
APA03_RS04980	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS05090	PWY-2201	folate transformations I
APA03_RS05115	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APA03_RS05195	PWY-6531	mannitol cycle
APA03_RS05295	PWY-6123	inosine-5'-phosphate biosynthesis I
APA03_RS05295	PWY-7234	inosine-5'-phosphate biosynthesis III
APA03_RS05350	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APA03_RS05350	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS05350	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APA03_RS05350	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APA03_RS05350	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS05350	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS05350	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS05350	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APA03_RS05355	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APA03_RS05355	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS05355	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APA03_RS05355	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APA03_RS05355	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS05355	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS05355	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS05355	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APA03_RS05370	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APA03_RS05370	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APA03_RS05375	PWY-5686	UMP biosynthesis
APA03_RS05395	PWY-3461	L-tyrosine biosynthesis II
APA03_RS05395	PWY-3462	L-phenylalanine biosynthesis II
APA03_RS05395	PWY-6120	L-tyrosine biosynthesis III
APA03_RS05395	PWY-6627	salinosporamide A biosynthesis
APA03_RS05395	PWY-7626	bacilysin biosynthesis
APA03_RS05465	PWY-7533	gliotoxin biosynthesis
APA03_RS05475	PWY-5269	cardiolipin biosynthesis II
APA03_RS05475	PWY-5668	cardiolipin biosynthesis I
APA03_RS05490	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS05510	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APA03_RS05520	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS05535	PWY-1042	glycolysis IV (plant cytosol)
APA03_RS05535	PWY-1622	formaldehyde assimilation I (serine pathway)
APA03_RS05535	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APA03_RS05535	PWY-5484	glycolysis II (from fructose 6-phosphate)
APA03_RS05535	PWY-5723	Rubisco shunt
APA03_RS05535	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APA03_RS05535	PWY-6886	1-butanol autotrophic biosynthesis
APA03_RS05535	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS05535	PWY-7003	glycerol degradation to butanol
APA03_RS05535	PWY-7124	ethylene biosynthesis V (engineered)
APA03_RS05535	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APA03_RS05555	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS05555	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS05560	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APA03_RS05560	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APA03_RS05560	PWY-6897	thiamin salvage II
APA03_RS05560	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APA03_RS05560	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APA03_RS05560	PWY-7356	thiamin salvage IV (yeast)
APA03_RS05560	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APA03_RS05600	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
APA03_RS05605	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
APA03_RS05625	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APA03_RS05625	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APA03_RS05635	PWY-3801	sucrose degradation II (sucrose synthase)
APA03_RS05635	PWY-6527	stachyose degradation
APA03_RS05635	PWY-7238	sucrose biosynthesis II
APA03_RS05635	PWY-7343	UDP-glucose biosynthesis
APA03_RS05640	PWY-6749	CMP-legionaminate biosynthesis I
APA03_RS05645	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS05680	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APA03_RS05680	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APA03_RS05680	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APA03_RS05680	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APA03_RS05680	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
APA03_RS05680	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
APA03_RS05680	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
APA03_RS05680	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APA03_RS05680	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APA03_RS05680	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
APA03_RS05685	PWY-2941	L-lysine biosynthesis II
APA03_RS05685	PWY-2942	L-lysine biosynthesis III
APA03_RS05685	PWY-5097	L-lysine biosynthesis VI
APA03_RS05685	PWY-6559	spermidine biosynthesis II
APA03_RS05685	PWY-6562	norspermidine biosynthesis
APA03_RS05685	PWY-7153	grixazone biosynthesis
APA03_RS05690	PWY-723	alkylnitronates degradation
APA03_RS05740	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
APA03_RS05770	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APA03_RS05770	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APA03_RS05775	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APA03_RS05775	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS05775	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS05775	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APA03_RS05775	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APA03_RS05775	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APA03_RS05805	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APA03_RS05805	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APA03_RS05810	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APA03_RS05810	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APA03_RS05810	PWY-5989	stearate biosynthesis II (bacteria and plants)
APA03_RS05810	PWY-6113	superpathway of mycolate biosynthesis
APA03_RS05810	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APA03_RS05810	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APA03_RS05810	PWY-7663	gondoate biosynthesis (anaerobic)
APA03_RS05810	PWY-7664	oleate biosynthesis IV (anaerobic)
APA03_RS05810	PWYG-321	mycolate biosynthesis
APA03_RS05815	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APA03_RS05825	PWY-7254	TCA cycle VII (acetate-producers)
APA03_RS05835	PWY-6703	preQ<sub>0</sub> biosynthesis
APA03_RS05840	PWY-6703	preQ<sub>0</sub> biosynthesis
APA03_RS05845	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APA03_RS05865	PWY-5278	sulfite oxidation III
APA03_RS05865	PWY-5340	sulfate activation for sulfonation
APA03_RS05865	PWY-6683	sulfate reduction III (assimilatory)
APA03_RS05865	PWY-6932	selenate reduction
APA03_RS05875	PWY-6683	sulfate reduction III (assimilatory)
APA03_RS05885	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APA03_RS05925	PWY-5367	petroselinate biosynthesis
APA03_RS05925	PWY-5515	L-arabinose degradation II
APA03_RS05925	PWY-5525	D-glucuronate degradation I
APA03_RS05925	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APA03_RS05925	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APA03_RS05925	PWY-5989	stearate biosynthesis II (bacteria and plants)
APA03_RS05925	PWY-5994	palmitate biosynthesis I (animals and fungi)
APA03_RS05925	PWY-6113	superpathway of mycolate biosynthesis
APA03_RS05925	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APA03_RS05925	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APA03_RS05925	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APA03_RS05925	PWY-7663	gondoate biosynthesis (anaerobic)
APA03_RS05925	PWY-7664	oleate biosynthesis IV (anaerobic)
APA03_RS05925	PWYG-321	mycolate biosynthesis
APA03_RS05930	PWY-4381	fatty acid biosynthesis initiation I
APA03_RS05930	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APA03_RS05930	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APA03_RS05985	PWY-2941	L-lysine biosynthesis II
APA03_RS05985	PWY-2942	L-lysine biosynthesis III
APA03_RS05985	PWY-5097	L-lysine biosynthesis VI
APA03_RS05990	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
APA03_RS05995	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APA03_RS06020	PWY-6936	seleno-amino acid biosynthesis
APA03_RS06065	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APA03_RS06065	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APA03_RS06065	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APA03_RS06070	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APA03_RS06070	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APA03_RS06070	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APA03_RS06080	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APA03_RS06080	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APA03_RS06080	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APA03_RS06085	PWY-6123	inosine-5'-phosphate biosynthesis I
APA03_RS06085	PWY-6124	inosine-5'-phosphate biosynthesis II
APA03_RS06085	PWY-7234	inosine-5'-phosphate biosynthesis III
APA03_RS06090	PWY-6123	inosine-5'-phosphate biosynthesis I
APA03_RS06090	PWY-6124	inosine-5'-phosphate biosynthesis II
APA03_RS06090	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS06090	PWY-7234	inosine-5'-phosphate biosynthesis III
APA03_RS06105	PWY-5269	cardiolipin biosynthesis II
APA03_RS06105	PWY-5668	cardiolipin biosynthesis I
APA03_RS06125	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APA03_RS06125	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APA03_RS06130	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APA03_RS06130	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APA03_RS06165	PWY-5958	acridone alkaloid biosynthesis
APA03_RS06165	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APA03_RS06165	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APA03_RS06170	PWY-5958	acridone alkaloid biosynthesis
APA03_RS06170	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APA03_RS06170	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APA03_RS06180	PWY-1042	glycolysis IV (plant cytosol)
APA03_RS06180	PWY-5484	glycolysis II (from fructose 6-phosphate)
APA03_RS06180	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APA03_RS06180	PWY-7003	glycerol degradation to butanol
APA03_RS06190	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APA03_RS06190	PWY-7177	UTP and CTP dephosphorylation II
APA03_RS06190	PWY-7185	UTP and CTP dephosphorylation I
APA03_RS06195	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APA03_RS06195	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APA03_RS06230	PWY-5839	menaquinol-7 biosynthesis
APA03_RS06230	PWY-5844	menaquinol-9 biosynthesis
APA03_RS06230	PWY-5849	menaquinol-6 biosynthesis
APA03_RS06230	PWY-5890	menaquinol-10 biosynthesis
APA03_RS06230	PWY-5891	menaquinol-11 biosynthesis
APA03_RS06230	PWY-5892	menaquinol-12 biosynthesis
APA03_RS06230	PWY-5895	menaquinol-13 biosynthesis
APA03_RS06240	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APA03_RS06240	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS06240	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS06240	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
APA03_RS06310	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APA03_RS06310	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APA03_RS06310	PWY-6896	thiamin salvage I
APA03_RS06310	PWY-6897	thiamin salvage II
APA03_RS06330	PWY-4261	glycerol degradation I
APA03_RS06340	PWY-4261	glycerol degradation I
APA03_RS06340	PWY-6118	glycerol-3-phosphate shuttle
APA03_RS06340	PWY-6952	glycerophosphodiester degradation
APA03_RS06405	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APA03_RS06405	PWY-3162	L-tryptophan degradation V (side chain pathway)
APA03_RS06405	PWY-5057	L-valine degradation II
APA03_RS06405	PWY-5076	L-leucine degradation III
APA03_RS06405	PWY-5078	L-isoleucine degradation II
APA03_RS06405	PWY-5079	L-phenylalanine degradation III
APA03_RS06405	PWY-5082	L-methionine degradation III
APA03_RS06405	PWY-5480	pyruvate fermentation to ethanol I
APA03_RS06405	PWY-5486	pyruvate fermentation to ethanol II
APA03_RS06405	PWY-5751	phenylethanol biosynthesis
APA03_RS06405	PWY-6313	serotonin degradation
APA03_RS06405	PWY-6333	acetaldehyde biosynthesis I
APA03_RS06405	PWY-6342	noradrenaline and adrenaline degradation
APA03_RS06405	PWY-6454	vancomycin resistance I
APA03_RS06405	PWY-6587	pyruvate fermentation to ethanol III
APA03_RS06405	PWY-6802	salidroside biosynthesis
APA03_RS06405	PWY-6871	3-methylbutanol biosynthesis
APA03_RS06405	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS06405	PWY-7013	L-1,2-propanediol degradation
APA03_RS06405	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS06405	PWY-7118	chitin degradation to ethanol
APA03_RS06405	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APA03_RS06420	PWY-6654	phosphopantothenate biosynthesis III
APA03_RS06475	PWY-6832	2-aminoethylphosphonate degradation II
APA03_RS06490	PWY-5169	cyanurate degradation
APA03_RS06490	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APA03_RS06500	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS06500	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APA03_RS06500	PWY-6538	caffeine degradation III (bacteria, via demethylation)
APA03_RS06500	PWY-6596	adenosine nucleotides degradation I
APA03_RS06500	PWY-6606	guanosine nucleotides degradation II
APA03_RS06500	PWY-6607	guanosine nucleotides degradation I
APA03_RS06500	PWY-6608	guanosine nucleotides degradation III
APA03_RS06500	PWY-6999	theophylline degradation
APA03_RS06505	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS06505	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APA03_RS06505	PWY-6538	caffeine degradation III (bacteria, via demethylation)
APA03_RS06505	PWY-6596	adenosine nucleotides degradation I
APA03_RS06505	PWY-6606	guanosine nucleotides degradation II
APA03_RS06505	PWY-6607	guanosine nucleotides degradation I
APA03_RS06505	PWY-6608	guanosine nucleotides degradation III
APA03_RS06505	PWY-6999	theophylline degradation
APA03_RS06515	PWY-5691	urate degradation to allantoin I
APA03_RS06515	PWY-7394	urate degradation to allantoin II
APA03_RS06520	PWY-5691	urate degradation to allantoin I
APA03_RS06520	PWY-7394	urate degradation to allantoin II
APA03_RS06540	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS06540	PWY-6606	guanosine nucleotides degradation II
APA03_RS06540	PWY-6608	guanosine nucleotides degradation III
APA03_RS06540	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APA03_RS06545	PWY-4041	&gamma;-glutamyl cycle
APA03_RS06545	PWY-5826	hypoglycin biosynthesis
APA03_RS06610	PWY-6098	diploterol and cycloartenol biosynthesis
APA03_RS06610	PWY-7072	hopanoid biosynthesis (bacteria)
APA03_RS06625	PWY-6857	retinol biosynthesis
APA03_RS06680	PWY-6910	hydroxymethylpyrimidine salvage
APA03_RS06680	PWY-7356	thiamin salvage IV (yeast)
APA03_RS06680	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APA03_RS06905	PWY-6857	retinol biosynthesis
APA03_RS06975	PWY-5101	L-isoleucine biosynthesis II
APA03_RS06975	PWY-5103	L-isoleucine biosynthesis III
APA03_RS06975	PWY-5104	L-isoleucine biosynthesis IV
APA03_RS06975	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS07015	PWY-5642	2,4-dinitrotoluene degradation
APA03_RS07015	PWY-6373	acrylate degradation
APA03_RS07055	PWY-5169	cyanurate degradation
APA03_RS07055	PWY-5703	urea degradation I
APA03_RS07055	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APA03_RS07315	PWY-2201	folate transformations I
APA03_RS07315	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APA03_RS07320	PWY-5194	siroheme biosynthesis
APA03_RS07320	PWY-5441	S-methyl-L-methionine cycle
APA03_RS07320	PWY-702	L-methionine biosynthesis II
APA03_RS07320	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APA03_RS07330	PWY-2201	folate transformations I
APA03_RS07330	PWY-3841	folate transformations II
APA03_RS07330	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APA03_RS07355	PWY-6683	sulfate reduction III (assimilatory)
APA03_RS07365	PWY-5392	reductive TCA cycle II
APA03_RS07365	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APA03_RS07365	PWY-5690	TCA cycle II (plants and fungi)
APA03_RS07365	PWY-5913	TCA cycle VI (obligate autotrophs)
APA03_RS07365	PWY-6728	methylaspartate cycle
APA03_RS07365	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APA03_RS07365	PWY-7254	TCA cycle VII (acetate-producers)
APA03_RS07365	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APA03_RS07425	PWY-5482	pyruvate fermentation to acetate II
APA03_RS07425	PWY-5485	pyruvate fermentation to acetate IV
APA03_RS07425	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS07430	PWY-1281	sulfoacetaldehyde degradation I
APA03_RS07430	PWY-5482	pyruvate fermentation to acetate II
APA03_RS07430	PWY-5485	pyruvate fermentation to acetate IV
APA03_RS07430	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS07430	PWY-6637	sulfolactate degradation II
APA03_RS07475	PWY-5964	guanylyl molybdenum cofactor biosynthesis
APA03_RS07475	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
APA03_RS07485	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS07545	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS07545	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS07545	PWY-7560	methylerythritol phosphate pathway II
APA03_RS07560	PWY-2201	folate transformations I
APA03_RS07565	PWY-4983	L-citrulline-nitric oxide cycle
APA03_RS07565	PWY-4984	urea cycle
APA03_RS07565	PWY-5	canavanine biosynthesis
APA03_RS07565	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS07565	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APA03_RS07610	PWY-6825	phosphatidylcholine biosynthesis V
APA03_RS07615	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APA03_RS07615	PWY-6596	adenosine nucleotides degradation I
APA03_RS07615	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS07645	PWY-723	alkylnitronates degradation
APA03_RS07650	PWY-6348	phosphate acquisition
APA03_RS07685	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
APA03_RS07820	PWY-5913	TCA cycle VI (obligate autotrophs)
APA03_RS07820	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APA03_RS07820	PWY-6638	sulfolactate degradation III
APA03_RS07820	PWY-6642	(<i>R</i>)-cysteate degradation
APA03_RS07820	PWY-6643	coenzyme M biosynthesis II
APA03_RS07820	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APA03_RS07820	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APA03_RS07820	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APA03_RS07935	PWY-6695	oxalate degradation II
APA03_RS07935	PWY-6696	oxalate degradation III
APA03_RS07940	PWY-6695	oxalate degradation II
APA03_RS07980	PWY-2723	trehalose degradation V
APA03_RS07980	PWY-3801	sucrose degradation II (sucrose synthase)
APA03_RS07980	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APA03_RS07980	PWY-5661	GDP-glucose biosynthesis
APA03_RS07980	PWY-5940	streptomycin biosynthesis
APA03_RS07980	PWY-5941	glycogen degradation II (eukaryotic)
APA03_RS07980	PWY-622	starch biosynthesis
APA03_RS07980	PWY-6731	starch degradation III
APA03_RS07980	PWY-6737	starch degradation V
APA03_RS07980	PWY-6749	CMP-legionaminate biosynthesis I
APA03_RS07980	PWY-7238	sucrose biosynthesis II
APA03_RS07980	PWY-7343	UDP-glucose biosynthesis
APA03_RS08155	PWY-181	photorespiration
APA03_RS08160	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APA03_RS08160	PWY-5667	CDP-diacylglycerol biosynthesis I
APA03_RS08160	PWY-6453	stigma estolide biosynthesis
APA03_RS08160	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APA03_RS08160	PWY-7587	oleate biosynthesis III (cyanobacteria)
APA03_RS08165	PWY-6749	CMP-legionaminate biosynthesis I
APA03_RS08240	PWY-3961	phosphopantothenate biosynthesis II
APA03_RS08360	PWY-6938	NADH repair
APA03_RS08400	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS08400	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS08400	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS08400	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APA03_RS08430	PWY-1622	formaldehyde assimilation I (serine pathway)
APA03_RS08430	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APA03_RS08430	PWY-5913	TCA cycle VI (obligate autotrophs)
APA03_RS08430	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APA03_RS08430	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APA03_RS08430	PWY-6549	L-glutamine biosynthesis III
APA03_RS08430	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APA03_RS08430	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APA03_RS08430	PWY-7124	ethylene biosynthesis V (engineered)
APA03_RS08520	PWY-3781	aerobic respiration I (cytochrome c)
APA03_RS08520	PWY-4521	arsenite oxidation I (respiratory)
APA03_RS08520	PWY-6692	Fe(II) oxidation
APA03_RS08520	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APA03_RS08600	PWY-4381	fatty acid biosynthesis initiation I
APA03_RS08655	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APA03_RS08675	PWY-6829	tRNA methylation (yeast)
APA03_RS08675	PWY-7285	methylwyosine biosynthesis
APA03_RS08675	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APA03_RS08730	PWY-2201	folate transformations I
APA03_RS08735	PWY-6840	homoglutathione biosynthesis
APA03_RS08735	PWY-7255	ergothioneine biosynthesis I (bacteria)
APA03_RS08790	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APA03_RS08790	PWY-622	starch biosynthesis
APA03_RS08815	PWY-6854	ethylene biosynthesis III (microbes)
APA03_RS08865	PWY-7560	methylerythritol phosphate pathway II
APA03_RS08885	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APA03_RS08885	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APA03_RS08885	PWY-7622	UDP-galactofuranose biosynthesis
APA03_RS08920	PWY-7183	pyrimidine nucleobases salvage I
APA03_RS08935	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APA03_RS08950	PWY-6936	seleno-amino acid biosynthesis
APA03_RS08950	PWY-7274	D-cycloserine biosynthesis
APA03_RS09015	PWY-2301	<i>myo</i>-inositol biosynthesis
APA03_RS09015	PWY-4702	phytate degradation I
APA03_RS09015	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APA03_RS09150	PWY-3221	dTDP-L-rhamnose biosynthesis II
APA03_RS09150	PWY-6808	dTDP-D-forosamine biosynthesis
APA03_RS09150	PWY-6942	dTDP-D-desosamine biosynthesis
APA03_RS09150	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APA03_RS09150	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APA03_RS09150	PWY-6974	dTDP-L-olivose biosynthesis
APA03_RS09150	PWY-6976	dTDP-L-mycarose biosynthesis
APA03_RS09150	PWY-7104	dTDP-L-megosamine biosynthesis
APA03_RS09150	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APA03_RS09150	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APA03_RS09150	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APA03_RS09150	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APA03_RS09150	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APA03_RS09150	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APA03_RS09150	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APA03_RS09150	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APA03_RS09150	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APA03_RS09150	PWY-7688	APA03_RS09150
APA03_RS09155	PWY-3221	dTDP-L-rhamnose biosynthesis II
APA03_RS09155	PWY-6808	dTDP-D-forosamine biosynthesis
APA03_RS09155	PWY-6942	dTDP-D-desosamine biosynthesis
APA03_RS09155	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APA03_RS09155	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APA03_RS09155	PWY-6974	dTDP-L-olivose biosynthesis
APA03_RS09155	PWY-6976	dTDP-L-mycarose biosynthesis
APA03_RS09155	PWY-7104	dTDP-L-megosamine biosynthesis
APA03_RS09155	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APA03_RS09155	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APA03_RS09155	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APA03_RS09155	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APA03_RS09155	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APA03_RS09155	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APA03_RS09155	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APA03_RS09155	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APA03_RS09155	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APA03_RS09155	PWY-7688	APA03_RS09155
APA03_RS09240	PWY-7238	sucrose biosynthesis II
APA03_RS09240	PWY-7347	sucrose biosynthesis III
APA03_RS09240	PWY-7426	mannosyl-glycoprotein <i>N</i>-acetylglucosaminyltransferases
APA03_RS09290	PWY-6502	oxidized GTP and dGTP detoxification
APA03_RS09295	PWY-5659	GDP-mannose biosynthesis
APA03_RS09295	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APA03_RS09315	PWY-5663	tetrahydrobiopterin biosynthesis I
APA03_RS09315	PWY-5664	tetrahydrobiopterin biosynthesis II
APA03_RS09315	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APA03_RS09315	PWY-6703	preQ<sub>0</sub> biosynthesis
APA03_RS09315	PWY-6983	tetrahydrobiopterin biosynthesis III
APA03_RS09315	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APA03_RS09385	PWY-6167	flavin biosynthesis II (archaea)
APA03_RS09385	PWY-6168	flavin biosynthesis III (fungi)
APA03_RS09390	PWY-6167	flavin biosynthesis II (archaea)
APA03_RS09390	PWY-6168	flavin biosynthesis III (fungi)
APA03_RS09390	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APA03_RS09395	PWY-6167	flavin biosynthesis II (archaea)
APA03_RS09395	PWY-6168	flavin biosynthesis III (fungi)
APA03_RS09395	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS09400	PWY-5525	D-glucuronate degradation I
APA03_RS09415	PWY-3781	aerobic respiration I (cytochrome c)
APA03_RS09415	PWY-6692	Fe(II) oxidation
APA03_RS09415	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
APA03_RS09415	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APA03_RS09555	PWY-3341	L-proline biosynthesis III
APA03_RS09555	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APA03_RS09570	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APA03_RS09595	PWY-2201	folate transformations I
APA03_RS09615	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APA03_RS09615	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APA03_RS09620	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APA03_RS09620	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APA03_RS09620	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APA03_RS09625	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APA03_RS09625	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APA03_RS09635	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APA03_RS09635	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APA03_RS09635	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APA03_RS09635	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APA03_RS09640	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APA03_RS09640	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APA03_RS09645	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APA03_RS09645	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APA03_RS09650	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APA03_RS09650	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APA03_RS09670	PWY-2201	folate transformations I
APA03_RS09670	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS09690	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APA03_RS09690	PWY-6549	L-glutamine biosynthesis III
APA03_RS09690	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APA03_RS09690	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APA03_RS09720	PWY-6164	3-dehydroquinate biosynthesis I
APA03_RS09725	PWY-5381	pyridine nucleotide cycling (plants)
APA03_RS09735	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APA03_RS09770	PWY-5103	L-isoleucine biosynthesis III
APA03_RS09770	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS09775	PWY-5101	L-isoleucine biosynthesis II
APA03_RS09775	PWY-5103	L-isoleucine biosynthesis III
APA03_RS09775	PWY-5104	L-isoleucine biosynthesis IV
APA03_RS09775	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APA03_RS09775	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APA03_RS09775	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APA03_RS09775	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS09780	PWY-5101	L-isoleucine biosynthesis II
APA03_RS09780	PWY-5103	L-isoleucine biosynthesis III
APA03_RS09780	PWY-5104	L-isoleucine biosynthesis IV
APA03_RS09780	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APA03_RS09780	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APA03_RS09780	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APA03_RS09780	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS09785	PWY-2781	<i>cis</i>-zeatin biosynthesis
APA03_RS09825	PWY-1622	formaldehyde assimilation I (serine pathway)
APA03_RS09825	PWY-181	photorespiration
APA03_RS09825	PWY-2161	folate polyglutamylation
APA03_RS09825	PWY-2201	folate transformations I
APA03_RS09825	PWY-3661	glycine betaine degradation I
APA03_RS09825	PWY-3661-1	glycine betaine degradation II (mammalian)
APA03_RS09825	PWY-3841	folate transformations II
APA03_RS09825	PWY-5497	purine nucleobases degradation II (anaerobic)
APA03_RS09835	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APA03_RS09835	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APA03_RS09885	PWY-5958	acridone alkaloid biosynthesis
APA03_RS09885	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APA03_RS09885	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APA03_RS09955	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APA03_RS09955	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APA03_RS09955	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS09955	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS09955	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APA03_RS09955	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APA03_RS09955	PWY-7205	CMP phosphorylation
APA03_RS09955	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APA03_RS09955	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS09955	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS09955	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APA03_RS09955	PWY-7224	purine deoxyribonucleosides salvage
APA03_RS09955	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APA03_RS09955	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APA03_RS10010	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APA03_RS10010	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APA03_RS10010	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APA03_RS10030	PWY-702	L-methionine biosynthesis II
APA03_RS10390	PWY-6454	vancomycin resistance I
APA03_RS10390	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS10415	PWY-5316	nicotine biosynthesis
APA03_RS10415	PWY-5381	pyridine nucleotide cycling (plants)
APA03_RS10415	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APA03_RS10415	PWY-7342	superpathway of nicotine biosynthesis
APA03_RS10420	PWY-5316	nicotine biosynthesis
APA03_RS10420	PWY-7342	superpathway of nicotine biosynthesis
APA03_RS10550	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APA03_RS10560	PWY-2661	trehalose biosynthesis V
APA03_RS10565	PWY-2661	trehalose biosynthesis V
APA03_RS10565	PWY-6902	chitin degradation II
APA03_RS10570	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APA03_RS10570	PWY-622	starch biosynthesis
APA03_RS10575	PWY-622	starch biosynthesis
APA03_RS10720	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APA03_RS10790	PWY-6420	pyrroloquinoline quinone biosynthesis
APA03_RS10800	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS10830	PWY-5484	glycolysis II (from fructose 6-phosphate)
APA03_RS10870	PWY-5057	L-valine degradation II
APA03_RS10870	PWY-5076	L-leucine degradation III
APA03_RS10870	PWY-5078	L-isoleucine degradation II
APA03_RS10870	PWY-5101	L-isoleucine biosynthesis II
APA03_RS10870	PWY-5103	L-isoleucine biosynthesis III
APA03_RS10870	PWY-5104	L-isoleucine biosynthesis IV
APA03_RS10870	PWY-5108	L-isoleucine biosynthesis V
APA03_RS11025	PWY-5686	UMP biosynthesis
APA03_RS11045	PWY-7294	xylose degradation IV
APA03_RS11045	PWY-7295	L-arabinose degradation IV
APA03_RS11125	PWY-5194	siroheme biosynthesis
APA03_RS11125	PWY-5441	S-methyl-L-methionine cycle
APA03_RS11125	PWY-702	L-methionine biosynthesis II
APA03_RS11125	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APA03_RS11145	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APA03_RS11160	PWY-6654	phosphopantothenate biosynthesis III
APA03_RS11260	PWY-2	putrescine degradation IV
APA03_RS11260	PWY-3	putrescine degradation V
APA03_RS11365	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APA03_RS11365	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APA03_RS11365	PWY-6269	adenosylcobalamin salvage from cobinamide II
APA03_RS11370	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APA03_RS11370	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APA03_RS11370	PWY-6269	adenosylcobalamin salvage from cobinamide II
APA03_RS11375	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APA03_RS11375	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APA03_RS11375	PWY-6269	adenosylcobalamin salvage from cobinamide II
APA03_RS11380	PWY-5443	aminopropanol phosphate biosynthesis I
APA03_RS11390	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APA03_RS11390	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APA03_RS11400	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APA03_RS11400	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APA03_RS11400	PWY-6268	adenosylcobalamin salvage from cobalamin
APA03_RS11400	PWY-6269	adenosylcobalamin salvage from cobinamide II
APA03_RS11490	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APA03_RS11490	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APA03_RS11510	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APA03_RS11720	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APA03_RS11720	PWY-5723	Rubisco shunt
APA03_RS11720	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS11720	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS11720	PWY-6901	superpathway of glucose and xylose degradation
APA03_RS11720	PWY-7560	methylerythritol phosphate pathway II
APA03_RS11725	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APA03_RS11725	PWY-3801	sucrose degradation II (sucrose synthase)
APA03_RS11725	PWY-5054	sorbitol biosynthesis I
APA03_RS11725	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APA03_RS11725	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APA03_RS11725	PWY-5659	GDP-mannose biosynthesis
APA03_RS11725	PWY-5723	Rubisco shunt
APA03_RS11725	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APA03_RS11725	PWY-621	sucrose degradation III (sucrose invertase)
APA03_RS11725	PWY-622	starch biosynthesis
APA03_RS11725	PWY-6981	chitin biosynthesis
APA03_RS11725	PWY-6992	1,5-anhydrofructose degradation
APA03_RS11725	PWY-7238	sucrose biosynthesis II
APA03_RS11725	PWY-7347	sucrose biosynthesis III
APA03_RS11725	PWY-7385	1,3-propanediol biosynthesis (engineered)
APA03_RS11740	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APA03_RS11740	PWY-6855	chitin degradation I (archaea)
APA03_RS11740	PWY-6906	chitin derivatives degradation
APA03_RS11745	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APA03_RS11745	PWY-5723	Rubisco shunt
APA03_RS11750	PWY-5530	sorbitol biosynthesis II
APA03_RS11780	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APA03_RS11895	PWY-5704	urea degradation II
APA03_RS11900	PWY-5704	urea degradation II
APA03_RS11905	PWY-5704	urea degradation II
APA03_RS12040	PWY-5033	nicotinate degradation II
APA03_RS12040	PWY-6993	nicotine degradation II (pyrrolidine pathway)
APA03_RS12040	PWY-7128	nicotine degradation III (VPP pathway)
APA03_RS12040	PWY-722	nicotinate degradation I
APA03_RS12315	PWY-6834	spermidine biosynthesis III
APA03_RS12430	PWY-2201	folate transformations I
APA03_RS12430	PWY-3841	folate transformations II
APA03_RS12445	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APA03_RS12445	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APA03_RS12445	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APA03_RS12445	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APA03_RS12515	PWY-2941	L-lysine biosynthesis II
APA03_RS12515	PWY-5097	L-lysine biosynthesis VI
APA03_RS12585	PWY-5101	L-isoleucine biosynthesis II
APA03_RS12585	PWY-5103	L-isoleucine biosynthesis III
APA03_RS12585	PWY-5104	L-isoleucine biosynthesis IV
APA03_RS12585	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APA03_RS12635	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APA03_RS12635	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APA03_RS12635	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APA03_RS12635	PWY-6936	seleno-amino acid biosynthesis
APA03_RS12635	PWY-702	L-methionine biosynthesis II
APA03_RS12645	PWY-5392	reductive TCA cycle II
APA03_RS12645	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APA03_RS12645	PWY-5690	TCA cycle II (plants and fungi)
APA03_RS12645	PWY-5913	TCA cycle VI (obligate autotrophs)
APA03_RS12645	PWY-6728	methylaspartate cycle
APA03_RS12645	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APA03_RS12645	PWY-7254	TCA cycle VII (acetate-producers)
APA03_RS12645	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APA03_RS12665	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APA03_RS12765	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APA03_RS12765	PWY-6416	quinate degradation II
APA03_RS12765	PWY-6707	gallate biosynthesis
APA03_RS12785	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
APA03_RS12855	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APA03_RS13020	PWY-6825	phosphatidylcholine biosynthesis V
APA03_RS13115	PWY-3221	dTDP-L-rhamnose biosynthesis II
APA03_RS13115	PWY-6808	dTDP-D-forosamine biosynthesis
APA03_RS13115	PWY-6942	dTDP-D-desosamine biosynthesis
APA03_RS13115	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APA03_RS13115	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APA03_RS13115	PWY-6974	dTDP-L-olivose biosynthesis
APA03_RS13115	PWY-6976	dTDP-L-mycarose biosynthesis
APA03_RS13115	PWY-7104	dTDP-L-megosamine biosynthesis
APA03_RS13115	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APA03_RS13115	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APA03_RS13115	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APA03_RS13115	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APA03_RS13115	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APA03_RS13115	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APA03_RS13115	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APA03_RS13115	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APA03_RS13115	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APA03_RS13115	PWY-7688	APA03_RS13115
APA03_RS13120	PWY-3221	dTDP-L-rhamnose biosynthesis II
APA03_RS13120	PWY-6808	dTDP-D-forosamine biosynthesis
APA03_RS13120	PWY-6942	dTDP-D-desosamine biosynthesis
APA03_RS13120	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APA03_RS13120	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APA03_RS13120	PWY-6974	dTDP-L-olivose biosynthesis
APA03_RS13120	PWY-6976	dTDP-L-mycarose biosynthesis
APA03_RS13120	PWY-7104	dTDP-L-megosamine biosynthesis
APA03_RS13120	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APA03_RS13120	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APA03_RS13120	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APA03_RS13120	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APA03_RS13120	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APA03_RS13120	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APA03_RS13120	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APA03_RS13120	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APA03_RS13120	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APA03_RS13120	PWY-7688	APA03_RS13120
APA03_RS13170	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS13170	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS13170	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS13170	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APA03_RS13175	PWY-6823	molybdenum cofactor biosynthesis
APA03_RS13175	PWY-6891	thiazole biosynthesis II (Bacillus)
APA03_RS13175	PWY-6892	thiazole biosynthesis I (E. coli)
APA03_RS13175	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APA03_RS13185	PWY-6004	glycine betaine biosynthesis V (from glycine)
APA03_RS13200	PWY-2161	folate polyglutamylation
APA03_RS13205	PWY-4381	fatty acid biosynthesis initiation I
APA03_RS13205	PWY-5743	3-hydroxypropanoate cycle
APA03_RS13205	PWY-5744	glyoxylate assimilation
APA03_RS13205	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APA03_RS13205	PWY-6679	jadomycin biosynthesis
APA03_RS13205	PWY-6722	candicidin biosynthesis
APA03_RS13205	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APA03_RS13235	PWY-6749	CMP-legionaminate biosynthesis I
APA03_RS13240	PWY-6614	tetrahydrofolate biosynthesis
APA03_RS13320	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APA03_RS13360	PWY-3341	L-proline biosynthesis III
APA03_RS13360	PWY-4981	L-proline biosynthesis II (from arginine)
APA03_RS13360	PWY-6344	L-ornithine degradation II (Stickland reaction)
APA03_RS13410	PWY-5381	pyridine nucleotide cycling (plants)
APA03_RS13410	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APA03_RS13555	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APA03_RS13555	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
