APA32_RS00045	SM00464	Found in ATP-dependent protease La (LON)
APA32_RS00075	SM00932	Scaffold protein Nfu/NifU N terminal
APA32_RS00095	SM01209	APA32_RS00095
APA32_RS00095	SM01210	APA32_RS00095
APA32_RS00125	SM00829	Enoylreductase
APA32_RS00140	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
APA32_RS00140	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
APA32_RS00145	SM00859	Semialdehyde dehydrogenase, NAD binding domain
APA32_RS00185	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
APA32_RS00190	SM00861	Transketolase, pyrimidine binding domain
APA32_RS00215	SM00382	ATPases associated with a variety of cellular activities
APA32_RS00255	SM00382	ATPases associated with a variety of cellular activities
APA32_RS00265	SM00493	APA32_RS00265
APA32_RS00275	SM00905	Dihydroneopterin aldolase
APA32_RS00295	SM00316	Ribosomal protein S1-like RNA-binding domain
APA32_RS00330	SM00937	APA32_RS00330
APA32_RS00385	SM00917	LeuA allosteric (dimerisation) domain
APA32_RS00405	SM00387	Histidine kinase-like ATPases
APA32_RS00405	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS00405	SM00448	cheY-homologous receiver domain
APA32_RS00425	SM00986	Uracil DNA glycosylase superfamily
APA32_RS00425	SM00987	UreE urease accessory protein, C-terminal domain 
APA32_RS00435	SM00564	beta-propeller repeat
APA32_RS00485	SM00490	helicase superfamily c-terminal domain
APA32_RS00495	SM00347	helix_turn_helix multiple antibiotic resistance protein
APA32_RS00540	SM00490	helicase superfamily c-terminal domain
APA32_RS00560	SM00919	Malic enzyme, NAD binding domain
APA32_RS00560	SM01274	APA32_RS00560
APA32_RS00565	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
APA32_RS00565	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
APA32_RS00605	SM00382	ATPases associated with a variety of cellular activities
APA32_RS00620	SM00341	Helicase and RNase D C-terminal
APA32_RS00620	SM00474	3'-5' exonuclease
APA32_RS00645	SM00382	ATPases associated with a variety of cellular activities
APA32_RS00685	SM00342	helix_turn_helix, arabinose operon control protein
APA32_RS00720	SM00357	Cold shock protein domain
APA32_RS00780	SM00421	helix_turn_helix, Lux Regulon
APA32_RS00780	SM00448	cheY-homologous receiver domain
APA32_RS00785	SM00387	Histidine kinase-like ATPases
APA32_RS00785	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS00785	SM00448	cheY-homologous receiver domain
APA32_RS00805	SM00382	ATPases associated with a variety of cellular activities
APA32_RS00810	SM00382	ATPases associated with a variety of cellular activities
APA32_RS00870	SM00331	Sigma factor PP2C-like phosphatases
APA32_RS00870	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
APA32_RS00875	SM00220	Serine/Threonine protein kinases, catalytic domain
APA32_RS00880	SM00220	Serine/Threonine protein kinases, catalytic domain
APA32_RS00950	SM00347	helix_turn_helix multiple antibiotic resistance protein
APA32_RS01020	SM00028	Tetratricopeptide repeats
APA32_RS01050	SM00867	YceI-like domain 
APA32_RS01070	SM00382	ATPases associated with a variety of cellular activities
APA32_RS01090	SM00271	DnaJ molecular chaperone homology domain
APA32_RS01210	SM00487	DEAD-like helicases superfamily
APA32_RS01210	SM00490	helicase superfamily c-terminal domain
APA32_RS01310	SM01133	APA32_RS01310
APA32_RS01320	SM01040	BRO family, N-terminal domain
APA32_RS01415	SM00382	ATPases associated with a variety of cellular activities
APA32_RS01415	SM01086	C-terminal, D2-small domain, of ClpB protein
APA32_RS01445	SM00387	Histidine kinase-like ATPases
APA32_RS01445	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS01450	SM00448	cheY-homologous receiver domain
APA32_RS01450	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS01465	SM00271	DnaJ molecular chaperone homology domain
APA32_RS01485	SM00798	AICARFT/IMPCHase bienzyme
APA32_RS01485	SM00851	MGS-like domain
APA32_RS01525	SM00530	Helix-turn-helix XRE-family like proteins 
APA32_RS01550	SM00357	Cold shock protein domain
APA32_RS01550	SM00382	ATPases associated with a variety of cellular activities
APA32_RS01550	SM00959	Rho termination factor, N-terminal domain
APA32_RS01585	SM00382	ATPases associated with a variety of cellular activities
APA32_RS01595	SM00788	Adenylosuccinate synthetase
APA32_RS01600	SM00448	cheY-homologous receiver domain
APA32_RS01600	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS01605	SM00387	Histidine kinase-like ATPases
APA32_RS01605	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS01635	SM01091	Transporter associated domain
APA32_RS01640	SM00829	Enoylreductase
APA32_RS01645	SM00382	ATPases associated with a variety of cellular activities
APA32_RS01665	SM00822	APA32_RS01665
APA32_RS01670	SM00859	Semialdehyde dehydrogenase, NAD binding domain
APA32_RS01785	SM00477	DNA/RNA non-specific endonuclease
APA32_RS01785	SM00892	DNA/RNA non-specific endonuclease
APA32_RS01800	SM00530	Helix-turn-helix XRE-family like proteins 
APA32_RS01900	SM00450	Rhodanese Homology Domain
APA32_RS01975	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS01990	SM00861	Transketolase, pyrimidine binding domain
APA32_RS02005	SM01091	Transporter associated domain
APA32_RS02015	SM00986	Uracil DNA glycosylase superfamily
APA32_RS02015	SM00987	UreE urease accessory protein, C-terminal domain 
APA32_RS02020	SM00028	Tetratricopeptide repeats
APA32_RS02060	SM00382	ATPases associated with a variety of cellular activities
APA32_RS02070	SM01400	APA32_RS02070
APA32_RS02075	SM00855	Phosphoglycerate mutase family
APA32_RS02110	SM00822	APA32_RS02110
APA32_RS02145	SM00382	ATPases associated with a variety of cellular activities
APA32_RS02195	SM00421	helix_turn_helix, Lux Regulon
APA32_RS02340	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
APA32_RS02455	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
APA32_RS02470	SM00974	APA32_RS02470
APA32_RS02545	SM00530	Helix-turn-helix XRE-family like proteins 
APA32_RS02575	SM00857	Resolvase, N terminal domain
APA32_RS02585	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS02620	SM00450	Rhodanese Homology Domain
APA32_RS02790	SM00822	APA32_RS02790
APA32_RS02845	SM00882	Coenzyme A transferase
APA32_RS02900	SM00893	Electron transfer flavoprotein domain
APA32_RS02930	SM00893	Electron transfer flavoprotein domain
APA32_RS03005	SM00861	Transketolase, pyrimidine binding domain
APA32_RS03035	SM00320	WD40 repeats
APA32_RS03040	SM00833	Cobalamin synthesis protein cobW C-terminal domain
APA32_RS03160	SM01329	APA32_RS03160
APA32_RS03185	SM00938	Nitrogen regulatory protein P-II
APA32_RS03190	SM01230	APA32_RS03190
APA32_RS03200	SM00564	beta-propeller repeat
APA32_RS03215	SM00838	Elongation factor G C-terminus
APA32_RS03230	SM00487	DEAD-like helicases superfamily
APA32_RS03230	SM00490	helicase superfamily c-terminal domain
APA32_RS03240	SM00947	Carbonic anhydrase
APA32_RS03255	SM01409	APA32_RS03255
APA32_RS03260	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
APA32_RS03260	SM00954	Region found in RelA / SpoT proteins
APA32_RS03275	SM00358	Double-stranded RNA binding motif
APA32_RS03275	SM00535	Ribonuclease III family
APA32_RS03310	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
APA32_RS03320	SM00935	Outer membrane protein (OmpH-like)
APA32_RS03435	SM00382	ATPases associated with a variety of cellular activities
APA32_RS03450	SM00116	Domain in cystathionine beta-synthase and other proteins.
APA32_RS03455	SM00474	3'-5' exonuclease
APA32_RS03460	SM00967	RNA 2'-O ribose methyltransferase substrate binding
APA32_RS03475	SM00072	Guanylate kinase homologues.
APA32_RS03505	SM00382	ATPases associated with a variety of cellular activities
APA32_RS03520	SM00382	ATPases associated with a variety of cellular activities
APA32_RS03560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
APA32_RS03560	SM00895	APA32_RS03560
APA32_RS03650	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
APA32_RS03655	SM00487	DEAD-like helicases superfamily
APA32_RS03655	SM00490	helicase superfamily c-terminal domain
APA32_RS03655	SM00847	Helicase associated domain (HA2)  Add an annotation
APA32_RS03700	SM01007	Class II Aldolase and Adducin N-terminal domain
APA32_RS03715	SM00904	Riboflavin kinase
APA32_RS03735	SM00853	MutL C terminal dimerisation domain
APA32_RS03735	SM01340	APA32_RS03735
APA32_RS03750	SM00387	Histidine kinase-like ATPases
APA32_RS03750	SM00433	TopoisomeraseII
APA32_RS03785	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
APA32_RS03785	SM00245	tail specific protease
APA32_RS03790	SM00955	APA32_RS03790
APA32_RS03795	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
APA32_RS03795	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
APA32_RS03795	SM00493	APA32_RS03795
APA32_RS03825	SM01207	APA32_RS03825
APA32_RS03860	SM00861	Transketolase, pyrimidine binding domain
APA32_RS03885	SM00996	S-adenosyl-L-homocysteine hydrolase
APA32_RS03885	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
APA32_RS03890	SM00563	Phosphate acyltransferases
APA32_RS03900	SM00849	Metallo-beta-lactamase superfamily
APA32_RS03950	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
APA32_RS03985	SM00852	Probable molybdopterin binding domain
APA32_RS04035	SM00978	APA32_RS04035
APA32_RS04045	SM01235	APA32_RS04045
APA32_RS04050	SM00463	Small MutS-related domain
APA32_RS04155	SM00857	Resolvase, N terminal domain
APA32_RS04230	SM00954	Region found in RelA / SpoT proteins
APA32_RS04305	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
APA32_RS04350	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
APA32_RS04355	SM00829	Enoylreductase
APA32_RS04405	SM00479	APA32_RS04405
APA32_RS04460	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
APA32_RS04630	SM00448	cheY-homologous receiver domain
APA32_RS04630	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS04635	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
APA32_RS04635	SM00387	Histidine kinase-like ATPases
APA32_RS04635	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS04655	SM00649	Ribosomal protein L11/L12
APA32_RS04680	SM00663	RNA polymerase I subunit A N-terminus
APA32_RS04700	SM01403	APA32_RS04700
APA32_RS04720	SM01382	APA32_RS04720
APA32_RS04720	SM01383	APA32_RS04720
APA32_RS04735	SM00322	K homology RNA-binding domain
APA32_RS04755	SM01374	APA32_RS04755
APA32_RS04760	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
APA32_RS04825	SM00662	RNA polymerases D
APA32_RS04845	SM00382	ATPases associated with a variety of cellular activities
APA32_RS04920	SM00382	ATPases associated with a variety of cellular activities
APA32_RS04935	SM00382	ATPases associated with a variety of cellular activities
APA32_RS04960	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
APA32_RS04960	SM00245	tail specific protease
APA32_RS04985	SM00851	MGS-like domain
APA32_RS04985	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
APA32_RS04990	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
APA32_RS05000	SM00400	zinc finger
APA32_RS05000	SM00493	APA32_RS05000
APA32_RS05035	SM00650	Ribosomal RNA adenine dimethylases
APA32_RS05065	SM00382	ATPases associated with a variety of cellular activities
APA32_RS05070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
APA32_RS05070	SM00895	APA32_RS05070
APA32_RS05110	SM00028	Tetratricopeptide repeats
APA32_RS05115	SM01058	CarD-like/TRCF domain
APA32_RS05140	SM00382	ATPases associated with a variety of cellular activities
APA32_RS05155	SM00387	Histidine kinase-like ATPases
APA32_RS05155	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS05160	SM00091	PAS domain
APA32_RS05160	SM00387	Histidine kinase-like ATPases
APA32_RS05160	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS05160	SM00448	cheY-homologous receiver domain
APA32_RS05170	SM00382	ATPases associated with a variety of cellular activities
APA32_RS05170	SM01086	C-terminal, D2-small domain, of ClpB protein
APA32_RS05180	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
APA32_RS05215	SM00873	B3/4 domain
APA32_RS05215	SM00874	tRNA synthetase B5 domain
APA32_RS05215	SM00896	Ferredoxin-fold anticodon binding domain
APA32_RS05235	SM00100	Cyclic nucleotide-monophosphate binding domain
APA32_RS05245	SM00363	S4 RNA-binding domain
APA32_RS05245	SM01390	APA32_RS05245
APA32_RS05260	SM01329	APA32_RS05260
APA32_RS05295	SM01001	AIR carboxylase
APA32_RS05395	SM00855	Phosphoglycerate mutase family
APA32_RS05400	SM00830	Chorismate mutase type II
APA32_RS05420	SM00968	SMC proteins Flexible Hinge Domain
APA32_RS05430	SM00116	Domain in cystathionine beta-synthase and other proteins.
APA32_RS05430	SM01091	Transporter associated domain
APA32_RS05445	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS05450	SM00563	Phosphate acyltransferases
APA32_RS05475	SM00278	Helix-hairpin-helix DNA-binding motif class 1
APA32_RS05475	SM00465	GIY-YIG type nucleases (URI domain)
APA32_RS05525	SM00852	Probable molybdopterin binding domain
APA32_RS05540	SM01192	APA32_RS05540
APA32_RS05540	SM01193	APA32_RS05540
APA32_RS05570	SM00487	DEAD-like helicases superfamily
APA32_RS05570	SM00490	helicase superfamily c-terminal domain
APA32_RS05580	SM00487	DEAD-like helicases superfamily
APA32_RS05580	SM00490	helicase superfamily c-terminal domain
APA32_RS05580	SM00982	APA32_RS05580
APA32_RS05580	SM01058	CarD-like/TRCF domain
APA32_RS05605	SM00327	von Willebrand factor (vWF) type A domain
APA32_RS05615	SM00271	DnaJ molecular chaperone homology domain
APA32_RS05650	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS05700	SM00530	Helix-turn-helix XRE-family like proteins 
APA32_RS05715	SM00937	APA32_RS05715
APA32_RS05775	SM00936	Penicillin-binding protein 5, C-terminal domain 
APA32_RS05800	SM00849	Metallo-beta-lactamase superfamily
APA32_RS05850	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS05850	SM00876	Biotin and Thiamin Synthesis associated domain
APA32_RS05920	SM00825	Beta-ketoacyl synthase
APA32_RS05930	SM00822	APA32_RS05930
APA32_RS05935	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
APA32_RS05960	SM00857	Resolvase, N terminal domain
APA32_RS05980	SM00357	Cold shock protein domain
APA32_RS05990	SM01130	APA32_RS05990
APA32_RS06020	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06030	SM00450	Rhodanese Homology Domain
APA32_RS06045	SM00155	Phospholipase D. Active site motifs.
APA32_RS06075	SM01211	APA32_RS06075
APA32_RS06095	SM00998	Adenylosuccinate lyase C-terminus
APA32_RS06130	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS06145	SM00861	Transketolase, pyrimidine binding domain
APA32_RS06205	SM00387	Histidine kinase-like ATPases
APA32_RS06205	SM00433	TopoisomeraseII
APA32_RS06215	SM00480	DNA polymerase III beta subunit
APA32_RS06220	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06220	SM00760	Bacterial dnaA protein helix-turn-helix domain
APA32_RS06230	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
APA32_RS06230	SM01232	APA32_RS06230
APA32_RS06255	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06305	SM00822	APA32_RS06305
APA32_RS06350	SM00420	helix_turn_helix, Deoxyribose operon repressor
APA32_RS06350	SM01134	APA32_RS06350
APA32_RS06355	SM00341	Helicase and RNase D C-terminal
APA32_RS06355	SM00487	DEAD-like helicases superfamily
APA32_RS06355	SM00490	helicase superfamily c-terminal domain
APA32_RS06355	SM00956	APA32_RS06355
APA32_RS06365	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06370	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06375	SM00387	Histidine kinase-like ATPases
APA32_RS06395	SM00448	cheY-homologous receiver domain
APA32_RS06400	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06410	SM00829	Enoylreductase
APA32_RS06450	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06505	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
APA32_RS06510	SM01092	CO dehydrogenase flavoprotein C-terminal domain
APA32_RS06585	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06655	SM01060	APA32_RS06655
APA32_RS06710	SM00382	ATPases associated with a variety of cellular activities
APA32_RS06790	SM00342	helix_turn_helix, arabinose operon control protein
APA32_RS06860	SM00965	Secretin and TonB N terminus short domain
APA32_RS06875	SM00965	Secretin and TonB N terminus short domain
APA32_RS06895	SM00062	Bacterial periplasmic substrate-binding proteins
APA32_RS06900	SM00382	ATPases associated with a variety of cellular activities
APA32_RS07035	SM00382	ATPases associated with a variety of cellular activities
APA32_RS07055	SM00796	Allophanate hydrolase subunit 1
APA32_RS07055	SM00797	Allophanate hydrolase subunit 2
APA32_RS07055	SM00878	Biotin carboxylase C-terminal domain
APA32_RS07135	SM00903	Flavin reductase like domain
APA32_RS07205	SM00487	DEAD-like helicases superfamily
APA32_RS07365	SM00886	Stress responsive A/B Barrel Domain
APA32_RS07390	SM00564	beta-propeller repeat
APA32_RS07445	SM00890	Domain of unknown function
APA32_RS07490	SM00852	Probable molybdopterin binding domain
APA32_RS07550	SM00861	Transketolase, pyrimidine binding domain
APA32_RS07555	SM00363	S4 RNA-binding domain
APA32_RS07600	SM00448	cheY-homologous receiver domain
APA32_RS07600	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS07620	SM00116	Domain in cystathionine beta-synthase and other proteins.
APA32_RS07620	SM01240	APA32_RS07620
APA32_RS07640	SM00382	ATPases associated with a variety of cellular activities
APA32_RS07645	SM00382	ATPases associated with a variety of cellular activities
APA32_RS07655	SM00014	Acid phosphatase homologues
APA32_RS07735	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS07780	SM00382	ATPases associated with a variety of cellular activities
APA32_RS07785	SM00382	ATPases associated with a variety of cellular activities
APA32_RS07795	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
APA32_RS07805	SM00671	Sel1-like repeats.
APA32_RS07820	SM00870	APA32_RS07820
APA32_RS07865	SM00382	ATPases associated with a variety of cellular activities
APA32_RS07890	SM00829	Enoylreductase
APA32_RS07990	SM01266	APA32_RS07990
APA32_RS08035	SM00387	Histidine kinase-like ATPases
APA32_RS08035	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS08040	SM00448	cheY-homologous receiver domain
APA32_RS08040	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS08215	SM00346	helix_turn_helix isocitrate lyase regulation
APA32_RS08225	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08240	SM00849	Metallo-beta-lactamase superfamily
APA32_RS08285	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
APA32_RS08290	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
APA32_RS08335	SM00411	bacterial (prokaryotic) histone like domain
APA32_RS08340	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08340	SM00464	Found in ATP-dependent protease La (LON)
APA32_RS08345	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08345	SM00994	ClpX C4-type zinc finger
APA32_RS08345	SM01086	C-terminal, D2-small domain, of ClpB protein
APA32_RS08380	SM00487	DEAD-like helicases superfamily
APA32_RS08380	SM00490	helicase superfamily c-terminal domain
APA32_RS08415	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08445	SM00838	Elongation factor G C-terminus
APA32_RS08445	SM00889	Elongation factor G, domain IV
APA32_RS08460	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
APA32_RS08475	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
APA32_RS08475	SM00534	ATPase domain of DNA mismatch repair MUTS family
APA32_RS08480	SM00028	Tetratricopeptide repeats
APA32_RS08510	SM00978	APA32_RS08510
APA32_RS08550	SM00344	helix_turn_helix ASNC type
APA32_RS08570	SM00411	bacterial (prokaryotic) histone like domain
APA32_RS08575	SM00986	Uracil DNA glycosylase superfamily
APA32_RS08575	SM00987	UreE urease accessory protein, C-terminal domain 
APA32_RS08595	SM00422	helix_turn_helix, mercury resistance
APA32_RS08600	SM00411	bacterial (prokaryotic) histone like domain
APA32_RS08630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
APA32_RS08630	SM00387	Histidine kinase-like ATPases
APA32_RS08630	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS08635	SM00448	cheY-homologous receiver domain
APA32_RS08635	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS08640	SM00347	helix_turn_helix multiple antibiotic resistance protein
APA32_RS08660	SM01329	APA32_RS08660
APA32_RS08695	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08695	SM00962	SRP54-type protein, GTPase domain
APA32_RS08695	SM00963	SRP54-type protein, helical bundle domain
APA32_RS08715	SM00363	S4 RNA-binding domain
APA32_RS08720	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08750	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08755	SM00564	beta-propeller repeat
APA32_RS08825	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08825	SM01086	C-terminal, D2-small domain, of ClpB protein
APA32_RS08845	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08845	SM00448	cheY-homologous receiver domain
APA32_RS08850	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
APA32_RS08850	SM00387	Histidine kinase-like ATPases
APA32_RS08850	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS08855	SM00382	ATPases associated with a variety of cellular activities
APA32_RS08855	SM00448	cheY-homologous receiver domain
APA32_RS08860	SM00091	PAS domain
APA32_RS08860	SM00387	Histidine kinase-like ATPases
APA32_RS08860	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS08940	SM00984	UDP binding domain
APA32_RS08950	SM00938	Nitrogen regulatory protein P-II
APA32_RS08955	SM00971	Serine acetyltransferase, N-terminal
APA32_RS09015	SM00841	Elongation factor P, C-terminal
APA32_RS09015	SM01185	APA32_RS09015
APA32_RS09025	SM00491	APA32_RS09025
APA32_RS09030	SM00357	Cold shock protein domain
APA32_RS09040	SM00883	Chaperonin 10 Kd subunit
APA32_RS09240	SM00607	eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain
APA32_RS09270	SM00487	DEAD-like helicases superfamily
APA32_RS09270	SM00490	helicase superfamily c-terminal domain
APA32_RS09275	SM01323	APA32_RS09275
APA32_RS09325	SM00852	Probable molybdopterin binding domain
APA32_RS09490	SM00487	DEAD-like helicases superfamily
APA32_RS09490	SM00490	helicase superfamily c-terminal domain
APA32_RS09560	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
APA32_RS09665	SM00842	Cell division protein FtsA
APA32_RS09670	SM00864	Tubulin/FtsZ family, GTPase domain
APA32_RS09670	SM00865	Tubulin/FtsZ family, C-terminal domain
APA32_RS09690	SM00292	breast cancer carboxy-terminal domain
APA32_RS09690	SM00532	Ligase N family
APA32_RS09810	SM00487	DEAD-like helicases superfamily
APA32_RS09810	SM00490	helicase superfamily c-terminal domain
APA32_RS09840	SM01004	Delta-aminolevulinic acid dehydratase
APA32_RS09850	SM00434	DNA Topoisomerase IV
APA32_RS09895	SM00481	DNA polymerase alpha chain like domain
APA32_RS09935	SM00507	HNH nucleases
APA32_RS09955	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS09960	SM00562	APA32_RS09960
APA32_RS09965	SM00382	ATPases associated with a variety of cellular activities
APA32_RS09975	SM00448	cheY-homologous receiver domain
APA32_RS09975	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS09980	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
APA32_RS09980	SM00387	Histidine kinase-like ATPases
APA32_RS09995	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
APA32_RS10005	SM00028	Tetratricopeptide repeats
APA32_RS10085	SM00646	APA32_RS10085
APA32_RS10090	SM00316	Ribosomal protein S1-like RNA-binding domain
APA32_RS10105	SM00316	Ribosomal protein S1-like RNA-binding domain
APA32_RS10240	SM00507	HNH nucleases
APA32_RS10285	SM01040	BRO family, N-terminal domain
APA32_RS10320	SM00479	APA32_RS10320
APA32_RS10410	SM00460	Transglutaminase/protease-like homologues
APA32_RS10520	SM00797	Allophanate hydrolase subunit 2
APA32_RS10525	SM00796	Allophanate hydrolase subunit 1
APA32_RS10540	SM00878	Biotin carboxylase C-terminal domain
APA32_RS10570	SM00642	Alpha-amylase domain
APA32_RS10575	SM00642	Alpha-amylase domain
APA32_RS10580	SM00642	Alpha-amylase domain
APA32_RS10590	SM00642	Alpha-amylase domain
APA32_RS10760	SM00836	DALR anticodon binding domain
APA32_RS10760	SM01016	Arginyl tRNA synthetase N terminal dom
APA32_RS10765	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
APA32_RS10810	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS10855	SM00363	S4 RNA-binding domain
APA32_RS10865	SM00382	ATPases associated with a variety of cellular activities
APA32_RS10885	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
APA32_RS10885	SM00474	3'-5' exonuclease
APA32_RS10885	SM00475	5'-3' exonuclease
APA32_RS10885	SM00482	DNA polymerase A domain
APA32_RS10895	SM00563	Phosphate acyltransferases
APA32_RS10945	SM00564	beta-propeller repeat
APA32_RS10965	SM00345	helix_turn_helix gluconate operon transcriptional repressor
APA32_RS11005	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
APA32_RS11035	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
APA32_RS11105	SM00530	Helix-turn-helix XRE-family like proteins 
APA32_RS11120	SM00382	ATPases associated with a variety of cellular activities
APA32_RS11150	SM00347	helix_turn_helix multiple antibiotic resistance protein
APA32_RS11160	SM00903	Flavin reductase like domain
APA32_RS11165	SM01007	Class II Aldolase and Adducin N-terminal domain
APA32_RS11180	SM00822	APA32_RS11180
APA32_RS11215	SM00564	beta-propeller repeat
APA32_RS11265	SM00382	ATPases associated with a variety of cellular activities
APA32_RS11290	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
APA32_RS11300	SM00671	Sel1-like repeats.
APA32_RS11415	SM00855	Phosphoglycerate mutase family
APA32_RS11430	SM00833	Cobalamin synthesis protein cobW C-terminal domain
APA32_RS11445	SM00347	helix_turn_helix multiple antibiotic resistance protein
APA32_RS11465	SM00903	Flavin reductase like domain
APA32_RS11475	SM00382	ATPases associated with a variety of cellular activities
APA32_RS11540	SM00857	Resolvase, N terminal domain
APA32_RS11700	SM00382	ATPases associated with a variety of cellular activities
APA32_RS11725	SM00248	ankyrin repeats
APA32_RS11730	SM00861	Transketolase, pyrimidine binding domain
APA32_RS11740	SM01350	APA32_RS11740
APA32_RS11785	SM00829	Enoylreductase
APA32_RS11800	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS11820	SM00382	ATPases associated with a variety of cellular activities
APA32_RS11845	SM00387	Histidine kinase-like ATPases
APA32_RS11845	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS11845	SM00448	cheY-homologous receiver domain
APA32_RS11850	SM00421	helix_turn_helix, Lux Regulon
APA32_RS11850	SM00448	cheY-homologous receiver domain
APA32_RS11900	SM00988	UreE urease accessory protein, N-terminal domain
APA32_RS11970	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
APA32_RS11980	SM00849	Metallo-beta-lactamase superfamily
APA32_RS12070	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
APA32_RS12085	SM00347	helix_turn_helix multiple antibiotic resistance protein
APA32_RS12105	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12155	SM00857	Resolvase, N terminal domain
APA32_RS12160	SM00530	Helix-turn-helix XRE-family like proteins 
APA32_RS12275	SM00849	Metallo-beta-lactamase superfamily
APA32_RS12355	SM00434	DNA Topoisomerase IV
APA32_RS12370	SM00316	Ribosomal protein S1-like RNA-binding domain
APA32_RS12370	SM00322	K homology RNA-binding domain
APA32_RS12375	SM01387	APA32_RS12375
APA32_RS12390	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12420	SM00671	Sel1-like repeats.
APA32_RS12430	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12440	SM01018	B12 binding domain
APA32_RS12515	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12515	SM00962	SRP54-type protein, GTPase domain
APA32_RS12515	SM00963	SRP54-type protein, helical bundle domain
APA32_RS12520	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS12540	SM00487	DEAD-like helicases superfamily
APA32_RS12540	SM00490	helicase superfamily c-terminal domain
APA32_RS12580	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12605	SM00829	Enoylreductase
APA32_RS12615	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
APA32_RS12675	SM01005	Alanine racemase, C-terminal domain
APA32_RS12680	SM00344	helix_turn_helix ASNC type
APA32_RS12700	SM00316	Ribosomal protein S1-like RNA-binding domain
APA32_RS12700	SM00322	K homology RNA-binding domain
APA32_RS12715	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12730	SM00062	Bacterial periplasmic substrate-binding proteins
APA32_RS12730	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
APA32_RS12735	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12745	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12785	SM00878	Biotin carboxylase C-terminal domain
APA32_RS12855	SM00732	Likely ribonuclease with RNase H fold.
APA32_RS12870	SM00845	GatB domain
APA32_RS12880	SM00382	ATPases associated with a variety of cellular activities
APA32_RS12885	SM00478	endonuclease III
APA32_RS12895	SM00478	endonuclease III
APA32_RS12975	SM00893	Electron transfer flavoprotein domain
APA32_RS12980	SM00893	Electron transfer flavoprotein domain
APA32_RS12995	SM00729	Elongator protein 3, MiaB family, Radical SAM
APA32_RS13005	SM00100	Cyclic nucleotide-monophosphate binding domain
APA32_RS13005	SM00419	helix_turn_helix, cAMP Regulatory protein
APA32_RS13010	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
APA32_RS13025	SM00363	S4 RNA-binding domain
APA32_RS13065	SM00857	Resolvase, N terminal domain
APA32_RS13115	SM00855	Phosphoglycerate mutase family
APA32_RS13150	SM00382	ATPases associated with a variety of cellular activities
APA32_RS13150	SM00843	APA32_RS13150
APA32_RS13200	SM00840	APA32_RS13200
APA32_RS13240	SM00448	cheY-homologous receiver domain
APA32_RS13240	SM00862	Transcriptional regulatory protein, C terminal
APA32_RS13255	SM00382	ATPases associated with a variety of cellular activities
APA32_RS13300	SM00382	ATPases associated with a variety of cellular activities
APA32_RS13305	SM00278	Helix-hairpin-helix DNA-binding motif class 1
APA32_RS13320	SM00957	SecA DEAD-like domain
APA32_RS13320	SM00958	SecA preprotein cross-linking domain
APA32_RS13355	SM00271	DnaJ molecular chaperone homology domain
APA32_RS13390	SM00411	bacterial (prokaryotic) histone like domain
APA32_RS13485	SM00470	ParB-like nuclease domain
APA32_RS13500	SM01228	APA32_RS13500
APA32_RS13605	SM00857	Resolvase, N terminal domain
APA32_RS13610	SM00885	D5 N terminal like
APA32_RS13615	SM00943	Bifunctional DNA primase/polymerase, N-terminal
APA32_RS14005	SM00387	Histidine kinase-like ATPases
APA32_RS14475	SM00387	Histidine kinase-like ATPases
APA32_RS14475	SM00448	cheY-homologous receiver domain
APA32_RS14480	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS15020	SM00564	beta-propeller repeat
APA32_RS15375	SM00387	Histidine kinase-like ATPases
APA32_RS15375	SM00388	His Kinase A (phosphoacceptor) domain
APA32_RS15375	SM00448	cheY-homologous receiver domain
APA32_RS15595	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
APA32_RS15775	SM00530	Helix-turn-helix XRE-family like proteins 
