locus-tag class description APT_RS00005 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 APT_RS00015 PF07690 Major Facilitator Superfamily APT_RS00025 PF03966 Trm112p-like protein APT_RS00030 PF05362 Lon protease (S16) C-terminal proteolytic domain APT_RS00030 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS00030 PF02190 ATP-dependent protease La (LON) substrate-binding domain APT_RS00035 PF00085 Thioredoxin APT_RS00040 PF17755 UvrA DNA-binding domain APT_RS00040 PF17760 UvrA interaction domain APT_RS00065 PF00881 Nitroreductase family APT_RS00075 PF00583 Acetyltransferase (GNAT) family APT_RS00080 PF02843 Phosphoribosylglycinamide synthetase, C domain APT_RS00080 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APT_RS00080 PF02844 Phosphoribosylglycinamide synthetase, N domain APT_RS00085 PF13742 OB-fold nucleic acid binding domain APT_RS00085 PF02601 Exonuclease VII, large subunit APT_RS00100 PF00266 Aminotransferase class-V APT_RS00105 PF00171 Aldehyde dehydrogenase family APT_RS00110 PF00107 Zinc-binding dehydrogenase APT_RS00110 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS00115 PF02233 NAD(P) transhydrogenase beta subunit APT_RS00120 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APT_RS00125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APT_RS00125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APT_RS00130 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT_RS00130 PF02774 Semialdehyde dehydrogenase, dimerisation domain APT_RS00135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT_RS00140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APT_RS00145 PF02910 Fumarate reductase flavoprotein C-term APT_RS00145 PF00890 FAD binding domain APT_RS00150 PF13085 2Fe-2S iron-sulfur cluster binding domain APT_RS00165 PF00892 EamA-like transporter family APT_RS00170 PF00162 Phosphoglycerate kinase APT_RS00175 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APT_RS00175 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APT_RS00180 PF02779 Transketolase, pyrimidine binding domain APT_RS00180 PF02780 Transketolase, C-terminal domain APT_RS00180 PF00456 Transketolase, thiamine diphosphate binding domain APT_RS00190 PF00155 Aminotransferase class I and II APT_RS00195 PF13462 Thioredoxin APT_RS00205 PF00154 recA bacterial DNA recombination protein APT_RS00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS00215 PF03459 TOBE domain APT_RS00220 PF04349 Periplasmic glucan biosynthesis protein, MdoG APT_RS00225 PF13632 Glycosyl transferase family group 2 APT_RS00230 PF01979 Amidohydrolase family APT_RS00235 PF07690 Major Facilitator Superfamily APT_RS00250 PF12169 DNA polymerase III subunits gamma and tau domain III APT_RS00250 PF12170 DNA polymerase III tau subunit V interacting with alpha APT_RS00250 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding APT_RS00255 PF02575 YbaB/EbfC DNA-binding family APT_RS00260 PF13662 Toprim domain APT_RS00260 PF02132 RecR protein APT_RS00270 PF02152 Dihydroneopterin aldolase APT_RS00280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT_RS00285 PF02224 Cytidylate kinase APT_RS00290 PF00575 S1 RNA binding domain APT_RS00305 PF01725 Ham1 family APT_RS00310 PF01138 3' exoribonuclease family, domain 1 APT_RS00310 PF03725 3' exoribonuclease family, domain 2 APT_RS00315 PF01628 HrcA protein C terminal domain APT_RS00320 PF17092 Penicillin-binding protein OB-like domain APT_RS00320 PF00905 Penicillin binding protein transpeptidase domain APT_RS00320 PF00912 Transglycosylase APT_RS00325 PF00472 RF-1 domain APT_RS00325 PF03462 PCRF domain APT_RS00335 PF01618 MotA/TolQ/ExbB proton channel family APT_RS00340 PF02472 Biopolymer transport protein ExbD/TolR APT_RS00345 PF02472 Biopolymer transport protein ExbD/TolR APT_RS00355 PF01098 Cell cycle protein APT_RS00360 PF03717 Penicillin-binding Protein dimerisation domain APT_RS00360 PF00905 Penicillin binding protein transpeptidase domain APT_RS00380 PF08502 LeuA allosteric (dimerisation) domain APT_RS00380 PF00682 HMGL-like APT_RS00385 PF02628 Cytochrome oxidase assembly protein APT_RS00395 PF07690 Major Facilitator Superfamily APT_RS00400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS00400 PF00512 His Kinase A (phospho-acceptor) domain APT_RS00400 PF08448 PAS fold APT_RS00400 PF13188 PAS domain APT_RS00400 PF00072 Response regulator receiver domain APT_RS00405 PF00156 Phosphoribosyl transferase domain APT_RS00410 PF04632 Fusaric acid resistance protein family APT_RS00415 PF13660 Domain of unknown function (DUF4147) APT_RS00415 PF05161 MOFRL family APT_RS00420 PF03167 Uracil DNA glycosylase superfamily APT_RS00425 PF00034 Cytochrome c APT_RS00425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_RS00430 PF13360 PQQ-like domain APT_RS00430 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_RS00440 PF01027 Inhibitor of apoptosis-promoting Bax1 APT_RS00450 PF06481 COX Aromatic Rich Motif APT_RS00450 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APT_RS00455 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT_RS00460 PF00510 Cytochrome c oxidase subunit III APT_RS00465 PF03626 Prokaryotic Cytochrome C oxidase subunit IV APT_RS00475 PF11953 Domain of unknown function (DUF3470) APT_RS00475 PF00037 4Fe-4S binding domain APT_RS00485 PF00883 Cytosol aminopeptidase family, catalytic domain APT_RS00485 PF02789 Cytosol aminopeptidase family, N-terminal domain APT_RS00500 PF00953 Glycosyl transferase family 4 APT_RS00505 PF02719 Polysaccharide biosynthesis protein APT_RS00510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APT_RS00520 PF01979 Amidohydrolase family APT_RS00525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT_RS00525 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS00530 PF00970 Oxidoreductase FAD-binding domain APT_RS00530 PF00175 Oxidoreductase NAD-binding domain APT_RS00545 PF09335 SNARE associated Golgi protein APT_RS00550 PF00326 Prolyl oligopeptidase family APT_RS00555 PF00390 Malic enzyme, N-terminal domain APT_RS00555 PF03949 Malic enzyme, NAD binding domain APT_RS00560 PF00467 KOW motif APT_RS00560 PF02357 Transcription termination factor nusG APT_RS00585 PF00213 ATP synthase delta (OSCP) subunit APT_RS00590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT_RS00590 PF00306 ATP synthase alpha/beta chain, C terminal domain APT_RS00590 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT_RS00595 PF00231 ATP synthase APT_RS00600 PF02874 ATP synthase alpha/beta family, beta-barrel domain APT_RS00600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT_RS00605 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APT_RS00610 PF14489 QueF-like protein APT_RS00615 PF00570 HRDC domain APT_RS00615 PF01612 3'-5' exonuclease APT_RS00620 PF00294 pfkB family carbohydrate kinase APT_RS00635 PF00324 Amino acid permease APT_RS00640 PF00005 ABC transporter APT_RS00640 PF17850 CysA C-terminal regulatory domain APT_RS00640 PF12857 TOBE-like domain APT_RS00645 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS00650 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS00670 PF12833 Helix-turn-helix domain APT_RS00670 PF02311 AraC-like ligand binding domain APT_RS00675 PF06751 Ethanolamine ammonia lyase large subunit (EutB) APT_RS00680 PF05985 Ethanolamine ammonia-lyase light chain (EutC) APT_RS00690 PF00529 HlyD membrane-fusion protein of T1SS APT_RS00690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_RS00695 PF00873 AcrB/AcrD/AcrF family APT_RS00700 PF02321 Outer membrane efflux protein APT_RS00705 PF00313 'Cold-shock' DNA-binding domain APT_RS00715 PF07715 TonB-dependent Receptor Plug Domain APT_RS00715 PF00593 TonB dependent receptor APT_RS00715 PF07660 Secretin and TonB N terminus short domain APT_RS00725 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT_RS00740 PF00795 Carbon-nitrogen hydrolase APT_RS00745 PF00486 Transcriptional regulatory protein, C terminal APT_RS00745 PF00072 Response regulator receiver domain APT_RS00750 PF00512 His Kinase A (phospho-acceptor) domain APT_RS00750 PF09308 LuxQ, periplasmic APT_RS00750 PF00072 Response regulator receiver domain APT_RS00750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS00770 PF00005 ABC transporter APT_RS00770 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT_RS00775 PF00005 ABC transporter APT_RS00800 PF00561 alpha/beta hydrolase fold APT_RS00805 PF00376 MerR family regulatory protein APT_RS00805 PF09278 MerR, DNA binding APT_RS00840 PF03692 Putative zinc- or iron-chelating domain APT_RS00855 PF08402 TOBE domain APT_RS00855 PF00005 ABC transporter APT_RS00880 PF00529 HlyD membrane-fusion protein of T1SS APT_RS00880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_RS00885 PF02321 Outer membrane efflux protein APT_RS00900 PF13243 Squalene-hopene cyclase C-terminal domain APT_RS00900 PF13249 Squalene-hopene cyclase N-terminal domain APT_RS00905 PF01593 Flavin containing amine oxidoreductase APT_RS00925 PF01370 NAD dependent epimerase/dehydratase family APT_RS00935 PF02153 Prephenate dehydrogenase APT_RS00950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS00950 PF03466 LysR substrate binding domain APT_RS00955 PF00578 AhpC/TSA family APT_RS00960 PF02627 Carboxymuconolactone decarboxylase family APT_RS00975 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase APT_RS00980 PF00719 Inorganic pyrophosphatase APT_RS00990 PF00005 ABC transporter APT_RS00990 PF12848 ABC transporter APT_RS00995 PF13302 Acetyltransferase (GNAT) domain APT_RS01010 PF05099 Tellurite resistance protein TerB APT_RS01010 PF00226 DnaJ domain APT_RS01020 PF08331 Domain of unknown function (DUF1730) APT_RS01025 PF01702 Queuine tRNA-ribosyltransferase APT_RS01030 PF02547 Queuosine biosynthesis protein APT_RS01040 PF01161 Phosphatidylethanolamine-binding protein APT_RS01055 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APT_RS01055 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APT_RS01070 PF08471 Class II vitamin B12-dependent ribonucleotide reductase APT_RS01070 PF02867 Ribonucleotide reductase, barrel domain APT_RS01095 PF02358 Trehalose-phosphatase APT_RS01100 PF00982 Glycosyltransferase family 20 APT_RS01105 PF02600 Disulfide bond formation protein DsbB APT_RS01120 PF00248 Aldo/keto reductase family APT_RS01130 PF00271 Helicase conserved C-terminal domain APT_RS01130 PF17757 UvrB interaction domain APT_RS01130 PF04851 Type III restriction enzyme, res subunit APT_RS01130 PF12344 Ultra-violet resistance protein B APT_RS01130 PF02151 UvrB/uvrC motif APT_RS01140 PF00675 Insulinase (Peptidase family M16) APT_RS01140 PF05193 Peptidase M16 inactive domain APT_RS01170 PF00324 Amino acid permease APT_RS01175 PF11799 impB/mucB/samB family C-terminal domain APT_RS01175 PF00817 impB/mucB/samB family APT_RS01190 PF01180 Dihydroorotate dehydrogenase APT_RS01205 PF13277 YmdB-like protein APT_RS01210 PF01812 5-formyltetrahydrofolate cyclo-ligase family APT_RS01235 PF01791 DeoC/LacD family aldolase APT_RS01240 PF02581 Thiamine monophosphate synthase APT_RS01260 PF00152 tRNA synthetases class II (D, K and N) APT_RS01265 PF12544 Lysine-2,3-aminomutase APT_RS01265 PF04055 Radical SAM superfamily APT_RS01275 PF00557 Metallopeptidase family M24 APT_RS01280 PF07943 Penicillin-binding protein 5, C-terminal domain APT_RS01280 PF00768 D-alanyl-D-alanine carboxypeptidase APT_RS01285 PF02617 ATP-dependent Clp protease adaptor protein ClpS APT_RS01290 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS01290 PF10431 C-terminal, D2-small domain, of ClpB protein APT_RS01290 PF17871 AAA lid domain APT_RS01290 PF02861 Clp amino terminal domain, pathogenicity island component APT_RS01290 PF07724 AAA domain (Cdc48 subfamily) APT_RS01300 PF03976 Polyphosphate kinase 2 (PPK2) APT_RS01305 PF02622 Uncharacterized ACR, COG1678 APT_RS01310 PF03668 P-loop ATPase protein family APT_RS01320 PF00672 HAMP domain APT_RS01320 PF13756 Stimulus-sensing domain APT_RS01320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS01320 PF13755 Sensor N-terminal transmembrane domain APT_RS01320 PF00512 His Kinase A (phospho-acceptor) domain APT_RS01325 PF00072 Response regulator receiver domain APT_RS01325 PF00486 Transcriptional regulatory protein, C terminal APT_RS01330 PF01025 GrpE APT_RS01335 PF00012 Hsp70 protein APT_RS01340 PF00684 DnaJ central domain APT_RS01340 PF00226 DnaJ domain APT_RS01340 PF01556 DnaJ C terminal domain APT_RS01345 PF05173 Dihydrodipicolinate reductase, C-terminus APT_RS01345 PF01113 Dihydrodipicolinate reductase, N-terminus APT_RS01350 PF02772 S-adenosylmethionine synthetase, central domain APT_RS01350 PF00438 S-adenosylmethionine synthetase, N-terminal domain APT_RS01350 PF02773 S-adenosylmethionine synthetase, C-terminal domain APT_RS01355 PF02390 Putative methyltransferase APT_RS01360 PF02142 MGS-like domain APT_RS01360 PF01808 AICARFT/IMPCHase bienzyme APT_RS01370 PF00892 EamA-like transporter family APT_RS01375 PF05746 DALR anticodon binding domain APT_RS01375 PF02092 Glycyl-tRNA synthetase beta subunit APT_RS01380 PF02091 Glycyl-tRNA synthetase alpha subunit APT_RS01390 PF01381 Helix-turn-helix APT_RS01395 PF00795 Carbon-nitrogen hydrolase APT_RS01405 PF01475 Ferric uptake regulator family APT_RS01415 PF07497 Rho termination factor, RNA-binding domain APT_RS01415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APT_RS01415 PF07498 Rho termination factor, N-terminal domain APT_RS01425 PF01544 CorA-like Mg2+ transporter protein APT_RS01430 PF00291 Pyridoxal-phosphate dependent enzyme APT_RS01435 PF00290 Tryptophan synthase alpha chain APT_RS01440 PF00890 FAD binding domain APT_RS01440 PF04205 FMN-binding domain APT_RS01440 PF03358 NADPH-dependent FMN reductase APT_RS01450 PF13393 Histidyl-tRNA synthetase APT_RS01455 PF00709 Adenylosuccinate synthetase APT_RS01460 PF00486 Transcriptional regulatory protein, C terminal APT_RS01460 PF00072 Response regulator receiver domain APT_RS01465 PF00512 His Kinase A (phospho-acceptor) domain APT_RS01465 PF00989 PAS fold APT_RS01465 PF11808 Phosphate regulon sensor protein PhoR APT_RS01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS01470 PF12849 PBP superfamily domain APT_RS01490 PF00328 Histidine phosphatase superfamily (branch 2) APT_RS01495 PF00571 CBS domain APT_RS01495 PF03471 Transporter associated domain APT_RS01495 PF01595 Cyclin M transmembrane N-terminal domain APT_RS01500 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS01500 PF00107 Zinc-binding dehydrogenase APT_RS01505 PF00005 ABC transporter APT_RS01505 PF03412 Peptidase C39 family APT_RS01505 PF00664 ABC transporter transmembrane region APT_RS01530 PF01118 Semialdehyde dehydrogenase, NAD binding domain APT_RS01535 PF03819 MazG nucleotide pyrophosphohydrolase domain APT_RS01545 PF00183 Hsp90 protein APT_RS01625 PF01757 Acyltransferase family APT_RS01650 PF01381 Helix-turn-helix APT_RS01650 PF06114 IrrE N-terminal-like domain APT_RS01650 PF09856 Predicted transcriptional regulator (DUF2083) APT_RS01655 PF03972 MmgE/PrpD family APT_RS01660 PF00285 Citrate synthase, C-terminal domain APT_RS01670 PF13193 AMP-binding enzyme C-terminal domain APT_RS01670 PF16177 Acetyl-coenzyme A synthetase N-terminus APT_RS01670 PF00501 AMP-binding enzyme APT_RS01675 PF07690 Major Facilitator Superfamily APT_RS01690 PF02073 Thermophilic metalloprotease (M29) APT_RS01705 PF02938 GAD domain APT_RS01705 PF00152 tRNA synthetases class II (D, K and N) APT_RS01705 PF01336 OB-fold nucleic acid binding domain APT_RS01710 PF01212 Beta-eliminating lyase APT_RS01715 PF01386 Ribosomal L25p family APT_RS01715 PF14693 Ribosomal protein TL5, C-terminal domain APT_RS01720 PF01195 Peptidyl-tRNA hydrolase APT_RS01725 PF01926 50S ribosome-binding GTPase APT_RS01725 PF06071 Protein of unknown function (DUF933) APT_RS01730 PF00171 Aldehyde dehydrogenase family APT_RS01735 PF01467 Cytidylyltransferase-like APT_RS01745 PF02590 Predicted SPOUT methyltransferase APT_RS01755 PF03466 LysR substrate binding domain APT_RS01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS01760 PF03306 Alpha-acetolactate decarboxylase APT_RS01765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_RS01765 PF00205 Thiamine pyrophosphate enzyme, central domain APT_RS01765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_RS01775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_RS01775 PF00205 Thiamine pyrophosphate enzyme, central domain APT_RS01775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_RS01780 PF02754 Cysteine-rich domain APT_RS01785 PF11870 Domain of unknown function (DUF3390) APT_RS01785 PF13183 4Fe-4S dicluster domain APT_RS01785 PF02589 LUD domain APT_RS01795 PF13536 Putative multidrug resistance efflux transporter APT_RS01800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APT_RS01805 PF00692 dUTPase APT_RS01820 PF04794 YdjC-like protein APT_RS01840 PF02779 Transketolase, pyrimidine binding domain APT_RS01840 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT_RS01840 PF02780 Transketolase, C-terminal domain APT_RS01845 PF06463 Molybdenum Cofactor Synthesis C APT_RS01845 PF04055 Radical SAM superfamily APT_RS01850 PF03471 Transporter associated domain APT_RS01850 PF00571 CBS domain APT_RS01850 PF01595 Cyclin M transmembrane N-terminal domain APT_RS01855 PF01464 Transglycosylase SLT domain APT_RS01860 PF03167 Uracil DNA glycosylase superfamily APT_RS01870 PF08544 GHMP kinases C terminal APT_RS01870 PF00288 GHMP kinases N terminal domain APT_RS01885 PF00106 short chain dehydrogenase APT_RS01900 PF01554 MatE APT_RS01905 PF00005 ABC transporter APT_RS01915 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APT_RS01915 PF14572 Phosphoribosyl synthetase-associated domain APT_RS01960 PF03466 LysR substrate binding domain APT_RS01960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS01965 PF00999 Sodium/hydrogen exchanger family APT_RS01970 PF00593 TonB dependent receptor APT_RS01970 PF07715 TonB-dependent Receptor Plug Domain APT_RS01980 PF01032 FecCD transport family APT_RS01985 PF00005 ABC transporter APT_RS01990 PF07691 PA14 domain APT_RS01990 PF00728 Glycosyl hydrolase family 20, catalytic domain APT_RS01990 PF02838 Glycosyl hydrolase family 20, domain 2 APT_RS01995 PF01869 BadF/BadG/BcrA/BcrD ATPase family APT_RS02000 PF13580 SIS domain APT_RS02010 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT_RS02030 PF00875 DNA photolyase APT_RS02030 PF03441 FAD binding domain of DNA photolyase APT_RS02035 PF01641 SelR domain APT_RS02050 PF00155 Aminotransferase class I and II APT_RS02065 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APT_RS02065 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APT_RS02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS02085 PF03466 LysR substrate binding domain APT_RS02095 PF07291 Methylamine utilisation protein MauE APT_RS02100 PF00578 AhpC/TSA family APT_RS02105 PF02975 Methylamine dehydrogenase, L chain APT_RS02120 PF00578 AhpC/TSA family APT_RS02130 PF00248 Aldo/keto reductase family APT_RS02135 PF03466 LysR substrate binding domain APT_RS02135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS02140 PF00171 Aldehyde dehydrogenase family APT_RS02145 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_RS02145 PF00034 Cytochrome c APT_RS02150 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_RS02155 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS02155 PF01799 [2Fe-2S] binding domain APT_RS02215 PF02325 YGGT family APT_RS02295 PF00593 TonB dependent receptor APT_RS02295 PF07715 TonB-dependent Receptor Plug Domain APT_RS02385 PF00239 Resolvase, N terminal domain APT_RS02385 PF02796 Helix-turn-helix domain of resolvase APT_RS02405 PF01757 Acyltransferase family APT_RS02430 PF17773 UPF0176 acylphosphatase like domain APT_RS02430 PF00581 Rhodanese-like domain APT_RS02545 PF00999 Sodium/hydrogen exchanger family APT_RS02575 PF00551 Formyl transferase APT_RS02580 PF04343 Protein of unknown function, DUF488 APT_RS02585 PF02082 Transcriptional regulator APT_RS02590 PF00106 short chain dehydrogenase APT_RS02595 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APT_RS02610 PF03061 Thioesterase superfamily APT_RS02630 PF05649 Peptidase family M13 APT_RS02630 PF01431 Peptidase family M13 APT_RS02640 PF00440 Bacterial regulatory proteins, tetR family APT_RS02640 PF17938 Tetracyclin repressor-like, C-terminal domain APT_RS02645 PF01144 Coenzyme A transferase APT_RS02650 PF05161 MOFRL family APT_RS02650 PF13660 Domain of unknown function (DUF4147) APT_RS02655 PF02770 Acyl-CoA dehydrogenase, middle domain APT_RS02655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APT_RS02655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APT_RS02675 PF01012 Electron transfer flavoprotein domain APT_RS02680 PF01012 Electron transfer flavoprotein domain APT_RS02680 PF00766 Electron transfer flavoprotein FAD-binding domain APT_RS02685 PF00171 Aldehyde dehydrogenase family APT_RS02690 PF05199 GMC oxidoreductase APT_RS02690 PF00732 GMC oxidoreductase APT_RS02695 PF07690 Major Facilitator Superfamily APT_RS02700 PF04966 Carbohydrate-selective porin, OprB family APT_RS02715 PF03976 Polyphosphate kinase 2 (PPK2) APT_RS02720 PF01384 Phosphate transporter family APT_RS02730 PF00676 Dehydrogenase E1 component APT_RS02735 PF02780 Transketolase, C-terminal domain APT_RS02735 PF02779 Transketolase, pyrimidine binding domain APT_RS02740 PF00364 Biotin-requiring enzyme APT_RS02740 PF00561 alpha/beta hydrolase fold APT_RS02745 PF00011 Hsp20/alpha crystallin family APT_RS02760 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS02770 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_RS02770 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_RS02775 PF00654 Voltage gated chloride channel APT_RS02780 PF16916 Dimerisation domain of Zinc Transporter APT_RS02780 PF01545 Cation efflux family APT_RS02785 PF01545 Cation efflux family APT_RS02795 PF00561 alpha/beta hydrolase fold APT_RS02810 PF03169 OPT oligopeptide transporter protein APT_RS02835 PF00899 ThiF family APT_RS02845 PF02887 Pyruvate kinase, alpha/beta domain APT_RS02845 PF00224 Pyruvate kinase, barrel domain APT_RS02865 PF03144 Elongation factor Tu domain 2 APT_RS02865 PF00009 Elongation factor Tu GTP binding domain APT_RS02865 PF00679 Elongation factor G C-terminus APT_RS02880 PF01266 FAD dependent oxidoreductase APT_RS02885 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS02890 PF00180 Isocitrate/isopropylmalate dehydrogenase APT_RS02910 PF00155 Aminotransferase class I and II APT_RS02915 PF00543 Nitrogen regulatory protein P-II APT_RS02920 PF03951 Glutamine synthetase, beta-Grasp domain APT_RS02920 PF00120 Glutamine synthetase, catalytic domain APT_RS02930 PF01011 PQQ enzyme repeat APT_RS02945 PF06421 GTP-binding protein LepA C-terminus APT_RS02945 PF03144 Elongation factor Tu domain 2 APT_RS02945 PF00679 Elongation factor G C-terminus APT_RS02945 PF00009 Elongation factor Tu GTP binding domain APT_RS02950 PF00561 alpha/beta hydrolase fold APT_RS02955 PF07021 Methionine biosynthesis protein MetW APT_RS02955 PF00561 alpha/beta hydrolase fold APT_RS02960 PF00270 DEAD/DEAH box helicase APT_RS02960 PF00271 Helicase conserved C-terminal domain APT_RS02970 PF00484 Carbonic anhydrase APT_RS02980 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APT_RS02985 PF01192 RNA polymerase Rpb6 APT_RS02990 PF02824 TGS domain APT_RS02990 PF04607 Region found in RelA / SpoT proteins APT_RS02990 PF13291 ACT domain APT_RS02995 PF01648 4'-phosphopantetheinyl transferase superfamily APT_RS03000 PF10502 Signal peptidase, peptidase S26 APT_RS03005 PF00035 Double-stranded RNA binding motif APT_RS03005 PF14622 Ribonuclease-III-like APT_RS03010 PF07650 KH domain APT_RS03010 PF01926 50S ribosome-binding GTPase APT_RS03015 PF00696 Amino acid kinase family APT_RS03020 PF01765 Ribosome recycling factor APT_RS03025 PF01255 Putative undecaprenyl diphosphate synthase APT_RS03035 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APT_RS03035 PF13288 DXP reductoisomerase C-terminal domain APT_RS03035 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APT_RS03040 PF02163 Peptidase family M50 APT_RS03040 PF17820 PDZ domain APT_RS03045 PF07244 Surface antigen variable number repeat APT_RS03045 PF01103 Surface antigen APT_RS03055 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APT_RS03055 PF00132 Bacterial transferase hexapeptide (six repeats) APT_RS03060 PF07977 FabA-like domain APT_RS03065 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APT_RS03065 PF00132 Bacterial transferase hexapeptide (six repeats) APT_RS03070 PF06230 LpxI C-terminal domain APT_RS03070 PF17930 LpxI N-terminal domain APT_RS03075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT_RS03085 PF00468 Ribosomal protein L34 APT_RS03090 PF00825 Ribonuclease P APT_RS03095 PF14849 YidC periplasmic domain APT_RS03095 PF02096 60Kd inner membrane protein APT_RS03100 PF01926 50S ribosome-binding GTPase APT_RS03105 PF00696 Amino acid kinase family APT_RS03110 PF00132 Bacterial transferase hexapeptide (six repeats) APT_RS03110 PF14602 Hexapeptide repeat of succinyl-transferase APT_RS03110 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APT_RS03115 PF01546 Peptidase family M20/M25/M40 APT_RS03115 PF07687 Peptidase dimerisation domain APT_RS03125 PF01416 tRNA pseudouridine synthase APT_RS03130 PF00551 Formyl transferase APT_RS03130 PF02911 Formyl transferase, C-terminal domain APT_RS03135 PF01327 Polypeptide deformylase APT_RS03140 PF00011 Hsp20/alpha crystallin family APT_RS03150 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus APT_RS03150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APT_RS03160 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS03160 PF03476 MOSC N-terminal beta barrel domain APT_RS03160 PF03473 MOSC domain APT_RS03165 PF00005 ABC transporter APT_RS03180 PF01380 SIS domain APT_RS03180 PF00571 CBS domain APT_RS03185 PF00570 HRDC domain APT_RS03185 PF01612 3'-5' exonuclease APT_RS03190 PF08032 RNA 2'-O ribose methyltransferase substrate binding APT_RS03190 PF00588 SpoU rRNA Methylase family APT_RS03200 PF00106 short chain dehydrogenase APT_RS03205 PF00625 Guanylate kinase APT_RS03210 PF00294 pfkB family carbohydrate kinase APT_RS03210 PF01467 Cytidylyltransferase-like APT_RS03220 PF03796 DnaB-like helicase C terminal domain APT_RS03220 PF00772 DnaB-like helicase N terminal domain APT_RS03230 PF00924 Mechanosensitive ion channel APT_RS03230 PF12794 Mechanosensitive ion channel inner membrane domain 1 APT_RS03230 PF12795 Mechanosensitive ion channel porin domain APT_RS03235 PF00005 ABC transporter APT_RS03240 PF02405 Permease MlaE APT_RS03250 PF06745 KaiC APT_RS03250 PF18073 Rubredoxin metal binding domain APT_RS03275 PF00324 Amino acid permease APT_RS03285 PF00171 Aldehyde dehydrogenase family APT_RS03285 PF01619 Proline dehydrogenase APT_RS03285 PF14850 DNA-binding domain of Proline dehydrogenase APT_RS03285 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APT_RS03300 PF13193 AMP-binding enzyme C-terminal domain APT_RS03300 PF00501 AMP-binding enzyme APT_RS03300 PF16177 Acetyl-coenzyme A synthetase N-terminus APT_RS03330 PF01923 Cobalamin adenosyltransferase APT_RS03345 PF02913 FAD linked oxidases, C-terminal domain APT_RS03345 PF01565 FAD binding domain APT_RS03355 PF03481 Putative GTP-binding controlling metal-binding APT_RS03355 PF01300 Telomere recombination APT_RS03360 PF00459 Inositol monophosphatase family APT_RS03365 PF02789 Cytosol aminopeptidase family, N-terminal domain APT_RS03365 PF00883 Cytosol aminopeptidase family, catalytic domain APT_RS03375 PF00248 Aldo/keto reductase family APT_RS03380 PF13180 PDZ domain APT_RS03385 PF00270 DEAD/DEAH box helicase APT_RS03385 PF04408 Helicase associated domain (HA2) APT_RS03385 PF00271 Helicase conserved C-terminal domain APT_RS03385 PF08482 ATP-dependent helicase C-terminal APT_RS03395 PF01430 Hsp33 protein APT_RS03405 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT_RS03405 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT_RS03410 PF00202 Aminotransferase class-III APT_RS03425 PF02416 mttA/Hcf106 family APT_RS03430 PF00596 Class II Aldolase and Adducin N-terminal domain APT_RS03435 PF03079 ARD/ARD' family APT_RS03445 PF06574 FAD synthetase APT_RS03445 PF01687 Riboflavin kinase APT_RS03450 PF08264 Anticodon-binding domain of tRNA APT_RS03450 PF00133 tRNA synthetases class I (I, L, M and V) APT_RS03450 PF06827 Zinc finger found in FPG and IleRS APT_RS03455 PF01252 Signal peptidase (SPase) II APT_RS03465 PF08676 MutL C terminal dimerisation domain APT_RS03465 PF01119 DNA mismatch repair protein, C-terminal domain APT_RS03470 PF00361 Proton-conducting membrane transporter APT_RS03470 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus APT_RS03475 PF00892 EamA-like transporter family APT_RS03480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS03480 PF00986 DNA gyrase B subunit, carboxyl terminus APT_RS03480 PF00204 DNA gyrase B APT_RS03480 PF01751 Toprim domain APT_RS03495 PF02082 Transcriptional regulator APT_RS03500 PF00291 Pyridoxal-phosphate dependent enzyme APT_RS03505 PF00691 OmpA family APT_RS03515 PF13180 PDZ domain APT_RS03515 PF03572 Peptidase family S41 APT_RS03520 PF08461 Ribonuclease R winged-helix domain APT_RS03520 PF08206 Ribonuclease B OB domain APT_RS03520 PF00773 RNB domain APT_RS03520 PF17876 Cold shock domain APT_RS03520 PF00575 S1 RNA binding domain APT_RS03525 PF01751 Toprim domain APT_RS03525 PF01131 DNA topoisomerase APT_RS03525 PF01396 Topoisomerase DNA binding C4 zinc finger APT_RS03525 PF13368 Topoisomerase C-terminal repeat APT_RS03530 PF17782 DprA winged helix domain APT_RS03530 PF02481 DNA recombination-mediator protein A APT_RS03535 PF02660 Glycerol-3-phosphate acyltransferase APT_RS03540 PF01979 Amidohydrolase family APT_RS03545 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APT_RS03545 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APT_RS03550 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT_RS03555 PF00753 Metallo-beta-lactamase superfamily APT_RS03555 PF13567 Domain of unknown function (DUF4131) APT_RS03555 PF03772 Competence protein APT_RS03560 PF02627 Carboxymuconolactone decarboxylase family APT_RS03565 PF03969 AFG1-like ATPase APT_RS03570 PF00676 Dehydrogenase E1 component APT_RS03570 PF16870 2-oxoglutarate dehydrogenase C-terminal APT_RS03570 PF02779 Transketolase, pyrimidine binding domain APT_RS03570 PF16078 2-oxoglutarate dehydrogenase N-terminus APT_RS03575 PF00364 Biotin-requiring enzyme APT_RS03575 PF02817 e3 binding domain APT_RS03575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT_RS03580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT_RS03580 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS03595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APT_RS03595 PF05221 S-adenosyl-L-homocysteine hydrolase APT_RS03610 PF00753 Metallo-beta-lactamase superfamily APT_RS03610 PF16123 Hydroxyacylglutathione hydrolase C-terminus APT_RS03640 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT_RS03645 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT_RS03650 PF01066 CDP-alcohol phosphatidyltransferase APT_RS03655 PF02666 Phosphatidylserine decarboxylase APT_RS03660 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT_RS03660 PF01411 tRNA synthetases class II (A) APT_RS03660 PF02272 DHHA1 domain APT_RS03670 PF00691 OmpA family APT_RS03675 PF01761 3-dehydroquinate synthase APT_RS03685 PF02899 Phage integrase, N-terminal SAM-like domain APT_RS03685 PF00589 Phage integrase family APT_RS03690 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APT_RS03695 PF00994 Probable molybdopterin binding domain APT_RS03695 PF18146 Damage-inducible protein CinA KH domain APT_RS03695 PF02464 Competence-damaged protein APT_RS03700 PF01921 tRNA synthetases class I (K) APT_RS03715 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APT_RS03720 PF00814 Glycoprotease family APT_RS03725 PF03900 Porphobilinogen deaminase, C-terminal domain APT_RS03725 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APT_RS03735 PF02556 Preprotein translocase subunit SecB APT_RS03740 PF00934 PE family APT_RS03740 PF00300 Histidine phosphatase superfamily (branch 1) APT_RS03750 PF01555 DNA methylase APT_RS03755 PF00034 Cytochrome c APT_RS03755 PF03150 Di-haem cytochrome c peroxidase APT_RS03760 PF00488 MutS domain V APT_RS03760 PF01713 Smr domain APT_RS03770 PF01218 Coproporphyrinogen III oxidase APT_RS03775 PF00032 Cytochrome b(C-terminal)/b6/petD APT_RS03775 PF00033 Cytochrome b/b6/petB APT_RS03775 PF02167 Cytochrome C1 family APT_RS03780 PF02167 Cytochrome C1 family APT_RS03780 PF00032 Cytochrome b(C-terminal)/b6/petD APT_RS03780 PF00033 Cytochrome b/b6/petB APT_RS03785 PF01048 Phosphorylase superfamily APT_RS03805 PF00881 Nitroreductase family APT_RS03810 PF02423 Ornithine cyclodeaminase/mu-crystallin family APT_RS03815 PF00171 Aldehyde dehydrogenase family APT_RS03870 PF00589 Phage integrase family APT_RS03870 PF13356 Arm DNA-binding domain APT_RS04000 PF02548 Ketopantoate hydroxymethyltransferase APT_RS04005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_RS04010 PF01022 Bacterial regulatory protein, arsR family APT_RS04015 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS04020 PF00089 Trypsin APT_RS04025 PF16363 GDP-mannose 4,6 dehydratase APT_RS04035 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT_RS04035 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT_RS04040 PF14698 Argininosuccinate lyase C-terminal APT_RS04040 PF00206 Lyase APT_RS04055 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APT_RS04055 PF01488 Shikimate / quinate 5-dehydrogenase APT_RS04055 PF08501 Shikimate dehydrogenase substrate binding domain APT_RS04060 PF01121 Dephospho-CoA kinase APT_RS04065 PF00929 Exonuclease APT_RS04075 PF00534 Glycosyl transferases group 1 APT_RS04075 PF13579 Glycosyl transferase 4-like domain APT_RS04085 PF00834 Ribulose-phosphate 3 epimerase family APT_RS04090 PF01189 16S rRNA methyltransferase RsmB/F APT_RS04090 PF01029 NusB family APT_RS04095 PF00551 Formyl transferase APT_RS04100 PF00586 AIR synthase related protein, N-terminal domain APT_RS04100 PF02769 AIR synthase related protein, C-terminal domain APT_RS04110 PF17941 Polyphosphate kinase C-terminal domain 1 APT_RS04110 PF02503 Polyphosphate kinase middle domain APT_RS04110 PF13090 Polyphosphate kinase C-terminal domain 2 APT_RS04110 PF13089 Polyphosphate kinase N-terminal domain APT_RS04115 PF02541 Ppx/GppA phosphatase family APT_RS04130 PF00005 ABC transporter APT_RS04150 PF07885 Ion channel APT_RS04150 PF17655 Inward rectifier potassium channel C-terminal domain APT_RS04155 PF04632 Fusaric acid resistance protein family APT_RS04160 PF04632 Fusaric acid resistance protein family APT_RS04180 PF03918 Cytochrome C biogenesis protein APT_RS04185 PF08534 Redoxin APT_RS04190 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APT_RS04190 PF01578 Cytochrome C assembly protein APT_RS04195 PF03100 CcmE APT_RS04200 PF01578 Cytochrome C assembly protein APT_RS04230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT_RS04230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT_RS04235 PF03588 Leucyl/phenylalanyl-tRNA protein transferase APT_RS04260 PF08335 GlnD PII-uridylyltransferase APT_RS04260 PF03710 Glutamate-ammonia ligase adenylyltransferase APT_RS04265 PF00578 AhpC/TSA family APT_RS04275 PF00083 Sugar (and other) transporter APT_RS04285 PF02646 RmuC family APT_RS04290 PF00486 Transcriptional regulatory protein, C terminal APT_RS04290 PF00072 Response regulator receiver domain APT_RS04295 PF00512 His Kinase A (phospho-acceptor) domain APT_RS04295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS04300 PF00873 AcrB/AcrD/AcrF family APT_RS04305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_RS04310 PF02321 Outer membrane efflux protein APT_RS04315 PF03946 Ribosomal protein L11, N-terminal domain APT_RS04315 PF00298 Ribosomal protein L11, RNA binding domain APT_RS04320 PF00687 Ribosomal protein L1p/L10e family APT_RS04325 PF00466 Ribosomal protein L10 APT_RS04330 PF00542 Ribosomal protein L7/L12 C-terminal domain APT_RS04330 PF16320 Ribosomal protein L7/L12 dimerisation domain APT_RS04335 PF04563 RNA polymerase beta subunit APT_RS04335 PF00562 RNA polymerase Rpb2, domain 6 APT_RS04335 PF10385 RNA polymerase beta subunit external 1 domain APT_RS04335 PF04565 RNA polymerase Rpb2, domain 3 APT_RS04335 PF04561 RNA polymerase Rpb2, domain 2 APT_RS04335 PF04560 RNA polymerase Rpb2, domain 7 APT_RS04340 PF04998 RNA polymerase Rpb1, domain 5 APT_RS04340 PF05000 RNA polymerase Rpb1, domain 4 APT_RS04340 PF04983 RNA polymerase Rpb1, domain 3 APT_RS04340 PF00623 RNA polymerase Rpb1, domain 2 APT_RS04340 PF04997 RNA polymerase Rpb1, domain 1 APT_RS04345 PF00164 Ribosomal protein S12/S23 APT_RS04350 PF00177 Ribosomal protein S7p/S5e APT_RS04355 PF00009 Elongation factor Tu GTP binding domain APT_RS04355 PF03144 Elongation factor Tu domain 2 APT_RS04355 PF03143 Elongation factor Tu C-terminal domain APT_RS04360 PF00338 Ribosomal protein S10p/S20e APT_RS04365 PF00297 Ribosomal protein L3 APT_RS04370 PF00573 Ribosomal protein L4/L1 family APT_RS04375 PF00276 Ribosomal protein L23 APT_RS04380 PF03947 Ribosomal Proteins L2, C-terminal domain APT_RS04380 PF00181 Ribosomal Proteins L2, RNA binding domain APT_RS04385 PF00203 Ribosomal protein S19 APT_RS04390 PF00237 Ribosomal protein L22p/L17e APT_RS04395 PF07650 KH domain APT_RS04395 PF00189 Ribosomal protein S3, C-terminal domain APT_RS04400 PF00252 Ribosomal protein L16p/L10e APT_RS04405 PF00831 Ribosomal L29 protein APT_RS04410 PF00366 Ribosomal protein S17 APT_RS04415 PF00238 Ribosomal protein L14p/L23e APT_RS04420 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APT_RS04425 PF00673 ribosomal L5P family C-terminus APT_RS04425 PF00281 Ribosomal protein L5 APT_RS04430 PF00253 Ribosomal protein S14p/S29e APT_RS04435 PF00410 Ribosomal protein S8 APT_RS04440 PF00347 Ribosomal protein L6 APT_RS04445 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APT_RS04450 PF00333 Ribosomal protein S5, N-terminal domain APT_RS04450 PF03719 Ribosomal protein S5, C-terminal domain APT_RS04455 PF00327 Ribosomal protein L30p/L7e APT_RS04460 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APT_RS04465 PF00344 SecY translocase APT_RS04470 PF05191 Adenylate kinase, active site lid APT_RS04475 PF00416 Ribosomal protein S13/S18 APT_RS04480 PF00411 Ribosomal protein S11 APT_RS04485 PF01000 RNA polymerase Rpb3/RpoA insert domain APT_RS04485 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APT_RS04485 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APT_RS04490 PF01196 Ribosomal protein L17 APT_RS04500 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS04505 PF00005 ABC transporter APT_RS04515 PF02321 Outer membrane efflux protein APT_RS04520 PF00873 AcrB/AcrD/AcrF family APT_RS04525 PF00873 AcrB/AcrD/AcrF family APT_RS04530 PF13533 Biotin-lipoyl like APT_RS04535 PF07690 Major Facilitator Superfamily APT_RS04540 PF05532 CsbD-like APT_RS04545 PF01351 Ribonuclease HII APT_RS04550 PF01555 DNA methylase APT_RS04550 PF18755 Restriction Enzyme Adenine Methylase Associated APT_RS04575 PF17863 AAA lid domain APT_RS04575 PF07726 ATPase family associated with various cellular activities (AAA) APT_RS04585 PF13735 tRNA nucleotidyltransferase domain 2 putative APT_RS04585 PF12627 Probable RNA and SrmB- binding site of polymerase A APT_RS04585 PF01743 Poly A polymerase head domain APT_RS04590 PF00005 ABC transporter APT_RS04590 PF00664 ABC transporter transmembrane region APT_RS04595 PF13533 Biotin-lipoyl like APT_RS04600 PF07690 Major Facilitator Superfamily APT_RS04605 PF00293 NUDIX domain APT_RS04615 PF13180 PDZ domain APT_RS04615 PF03572 Peptidase family S41 APT_RS04625 PF01676 Metalloenzyme superfamily APT_RS04625 PF06415 BPG-independent PGAM N-terminus (iPGM_N) APT_RS04630 PF13291 ACT domain APT_RS04630 PF00291 Pyridoxal-phosphate dependent enzyme APT_RS04635 PF01272 Transcription elongation factor, GreA/GreB, C-term APT_RS04635 PF03449 Transcription elongation factor, N-terminal APT_RS04640 PF02142 MGS-like domain APT_RS04640 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain APT_RS04640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_RS04645 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain APT_RS04645 PF00117 Glutamine amidotransferase class-I APT_RS04655 PF08275 DNA primase catalytic core, N-terminal domain APT_RS04655 PF13662 Toprim domain APT_RS04655 PF08278 DNA primase DnaG DnaB-binding APT_RS04655 PF10410 DnaB-helicase binding domain of primase APT_RS04655 PF01807 CHC2 zinc finger APT_RS04660 PF04546 Sigma-70, non-essential region APT_RS04660 PF04545 Sigma-70, region 4 APT_RS04660 PF00140 Sigma-70 factor, region 1.2 APT_RS04660 PF04539 Sigma-70 region 3 APT_RS04660 PF03979 Sigma-70 factor, region 1.1 APT_RS04660 PF04542 Sigma-70 region 2 APT_RS04670 PF01250 Ribosomal protein S6 APT_RS04675 PF01084 Ribosomal protein S18 APT_RS04680 PF01281 Ribosomal protein L9, N-terminal domain APT_RS04680 PF03948 Ribosomal protein L9, C-terminal domain APT_RS04690 PF00398 Ribosomal RNA adenine dimethylase APT_RS04695 PF09312 SurA N-terminal domain APT_RS04695 PF00639 PPIC-type PPIASE domain APT_RS04700 PF04453 LPS transport system D APT_RS04720 PF00664 ABC transporter transmembrane region APT_RS04720 PF00005 ABC transporter APT_RS04725 PF07729 FCD domain APT_RS04725 PF00392 Bacterial regulatory proteins, gntR family APT_RS04730 PF03776 Septum formation topological specificity factor MinE APT_RS04735 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT_RS04740 PF03775 Septum formation inhibitor MinC, C-terminal domain APT_RS04740 PF05209 Septum formation inhibitor MinC, N-terminal domain APT_RS04745 PF00043 Glutathione S-transferase, C-terminal domain APT_RS04745 PF13417 Glutathione S-transferase, N-terminal domain APT_RS04755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_RS04770 PF02559 CarD-like/TRCF domain APT_RS04775 PF01062 Bestrophin, RFP-TM, chloride channel APT_RS04780 PF00756 Putative esterase APT_RS04795 PF00005 ABC transporter APT_RS04810 PF13188 PAS domain APT_RS04810 PF00512 His Kinase A (phospho-acceptor) domain APT_RS04810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS04810 PF00072 Response regulator receiver domain APT_RS04810 PF08448 PAS fold APT_RS04815 PF08448 PAS fold APT_RS04815 PF00512 His Kinase A (phospho-acceptor) domain APT_RS04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS04815 PF13188 PAS domain APT_RS04815 PF00072 Response regulator receiver domain APT_RS04820 PF00227 Proteasome subunit APT_RS04825 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS04825 PF07724 AAA domain (Cdc48 subfamily) APT_RS04825 PF10431 C-terminal, D2-small domain, of ClpB protein APT_RS04830 PF02657 Fe-S metabolism associated domain APT_RS04835 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_RS04840 PF01799 [2Fe-2S] binding domain APT_RS04840 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS04845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_RS04845 PF00034 Cytochrome c APT_RS04845 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_RS04850 PF01232 Mannitol dehydrogenase Rossmann domain APT_RS04850 PF08125 Mannitol dehydrogenase C-terminal domain APT_RS04855 PF01632 Ribosomal protein L35 APT_RS04860 PF00453 Ribosomal protein L20 APT_RS04865 PF01409 tRNA synthetases class II core domain (F) APT_RS04865 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APT_RS04870 PF03484 tRNA synthetase B5 domain APT_RS04870 PF03147 Ferredoxin-fold anticodon binding domain APT_RS04870 PF03483 B3/4 domain APT_RS04870 PF01588 Putative tRNA binding domain APT_RS04870 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APT_RS04875 PF12849 PBP superfamily domain APT_RS04880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT_RS04890 PF00999 Sodium/hydrogen exchanger family APT_RS04900 PF01479 S4 domain APT_RS04900 PF00163 Ribosomal protein S4/S9 N-terminal domain APT_RS04905 PF16658 Class II release factor RF3, C-terminal domain APT_RS04905 PF00009 Elongation factor Tu GTP binding domain APT_RS04905 PF03144 Elongation factor Tu domain 2 APT_RS04915 PF00180 Isocitrate/isopropylmalate dehydrogenase APT_RS04915 PF18324 Hypothetical protein TT1725 APT_RS04920 PF01321 Creatinase/Prolidase N-terminal domain APT_RS04920 PF00557 Metallopeptidase family M24 APT_RS04930 PF00580 UvrD/REP helicase N-terminal domain APT_RS04930 PF13361 UvrD-like helicase C-terminal domain APT_RS04935 PF04002 RadC-like JAB domain APT_RS04940 PF04002 RadC-like JAB domain APT_RS04945 PF02222 ATP-grasp domain APT_RS04945 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APT_RS04950 PF00731 AIR carboxylase APT_RS04970 PF00011 Hsp20/alpha crystallin family APT_RS04975 PF01197 Ribosomal protein L31 APT_RS04980 PF01741 Large-conductance mechanosensitive channel, MscL APT_RS04990 PF07549 SecD/SecF GG Motif APT_RS04990 PF02355 Protein export membrane protein APT_RS04995 PF07549 SecD/SecF GG Motif APT_RS04995 PF02355 Protein export membrane protein APT_RS05000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APT_RS05000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APT_RS05005 PF00317 Ribonucleotide reductase, all-alpha domain APT_RS05005 PF02867 Ribonucleotide reductase, barrel domain APT_RS05005 PF03477 ATP cone domain APT_RS05010 PF00268 Ribonucleotide reductase, small chain APT_RS05020 PF00348 Polyprenyl synthetase APT_RS05025 PF01177 Asp/Glu/Hydantoin racemase APT_RS05030 PF00156 Phosphoribosyl transferase domain APT_RS05040 PF00285 Citrate synthase, C-terminal domain APT_RS05050 PF01817 Chorismate mutase type II APT_RS05050 PF02153 Prephenate dehydrogenase APT_RS05060 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APT_RS05060 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APT_RS05070 PF02463 RecF/RecN/SMC N terminal domain APT_RS05075 PF13462 Thioredoxin APT_RS05080 PF03471 Transporter associated domain APT_RS05080 PF00571 CBS domain APT_RS05085 PF02130 Uncharacterized protein family UPF0054 APT_RS05090 PF02562 PhoH-like protein APT_RS05095 PF00919 Uncharacterized protein family UPF0004 APT_RS05095 PF04055 Radical SAM superfamily APT_RS05095 PF01938 TRAM domain APT_RS05105 PF01103 Surface antigen APT_RS05105 PF07244 Surface antigen variable number repeat APT_RS05105 PF17243 POTRA domain TamA domain 1 APT_RS05120 PF01244 Membrane dipeptidase (Peptidase family M19) APT_RS05125 PF12826 Helix-hairpin-helix motif APT_RS05125 PF02151 UvrB/uvrC motif APT_RS05125 PF01541 GIY-YIG catalytic domain APT_RS05125 PF08459 UvrC Helix-hairpin-helix N-terminal APT_RS05130 PF01066 CDP-alcohol phosphatidyltransferase APT_RS05140 PF02597 ThiS family APT_RS05145 PF02391 MoaE protein APT_RS05150 PF00202 Aminotransferase class-III APT_RS05155 PF00155 Aminotransferase class I and II APT_RS05165 PF13649 Methyltransferase domain APT_RS05170 PF01726 LexA DNA binding domain APT_RS05170 PF00717 Peptidase S24-like APT_RS05175 PF03454 MoeA C-terminal region (domain IV) APT_RS05175 PF03453 MoeA N-terminal region (domain I and II) APT_RS05175 PF00994 Probable molybdopterin binding domain APT_RS05180 PF00471 Ribosomal protein L33 APT_RS05190 PF00113 Enolase, C-terminal TIM barrel domain APT_RS05190 PF03952 Enolase, N-terminal domain APT_RS05200 PF01266 FAD dependent oxidoreductase APT_RS05210 PF05690 Thiazole biosynthesis protein ThiG APT_RS05215 PF02581 Thiamine monophosphate synthase APT_RS05220 PF00270 DEAD/DEAH box helicase APT_RS05220 PF00271 Helicase conserved C-terminal domain APT_RS05220 PF17191 RecG wedge domain APT_RS05225 PF03937 Flavinator of succinate dehydrogenase APT_RS05230 PF02559 CarD-like/TRCF domain APT_RS05230 PF03461 TRCF domain APT_RS05230 PF17757 UvrB interaction domain APT_RS05230 PF00271 Helicase conserved C-terminal domain APT_RS05230 PF00270 DEAD/DEAH box helicase APT_RS05240 PF13593 SBF-like CPA transporter family (DUF4137) APT_RS05245 PF00282 Pyridoxal-dependent decarboxylase conserved domain APT_RS05250 PF06213 Cobalamin biosynthesis protein CobT APT_RS05250 PF11775 Cobalamin biosynthesis protein CobT VWA domain APT_RS05255 PF12556 Cobaltochelatase CobS subunit N terminal APT_RS05255 PF08406 CbbQ/NirQ/NorQ C-terminal APT_RS05255 PF07728 AAA domain (dynein-related subfamily) APT_RS05260 PF00226 DnaJ domain APT_RS05260 PF01556 DnaJ C terminal domain APT_RS05260 PF00684 DnaJ central domain APT_RS05265 PF01722 BolA-like protein APT_RS05275 PF03099 Biotin/lipoate A/B protein ligase family APT_RS05285 PF00483 Nucleotidyl transferase APT_RS05290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT_RS05290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT_RS05290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT_RS05290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT_RS05295 PF06463 Molybdenum Cofactor Synthesis C APT_RS05295 PF04055 Radical SAM superfamily APT_RS05300 PF08241 Methyltransferase domain APT_RS05305 PF00156 Phosphoribosyl transferase domain APT_RS05310 PF00462 Glutaredoxin APT_RS05325 PF10282 Lactonase, 7-bladed beta-propeller APT_RS05335 PF00696 Amino acid kinase family APT_RS05335 PF01842 ACT domain APT_RS05335 PF13840 ACT domain APT_RS05340 PF03060 Nitronate monooxygenase APT_RS05350 PF04551 GcpE protein APT_RS05355 PF13393 Histidyl-tRNA synthetase APT_RS05355 PF03129 Anticodon binding domain APT_RS05360 PF03462 PCRF domain APT_RS05360 PF00472 RF-1 domain APT_RS05370 PF13847 Methyltransferase domain APT_RS05370 PF17827 PrmC N-terminal domain APT_RS05390 PF02673 Bacitracin resistance protein BacA APT_RS05395 PF13520 Amino acid permease APT_RS05410 PF13406 Transglycosylase SLT domain APT_RS05415 PF03330 Lytic transglycolase APT_RS05415 PF05036 Sporulation related domain APT_RS05420 PF07943 Penicillin-binding protein 5, C-terminal domain APT_RS05420 PF00768 D-alanyl-D-alanine carboxypeptidase APT_RS05425 PF02223 Thymidylate kinase APT_RS05435 PF09334 tRNA synthetases class I (M) APT_RS05435 PF08264 Anticodon-binding domain of tRNA APT_RS05440 PF01026 TatD related DNase APT_RS05455 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APT_RS05455 PF01243 Pyridoxamine 5'-phosphate oxidase APT_RS05465 PF01264 Chorismate synthase APT_RS05470 PF02566 OsmC-like protein APT_RS05475 PF06039 Malate:quinone oxidoreductase (Mqo) APT_RS05485 PF06508 Queuosine biosynthesis protein QueC APT_RS05495 PF06968 Biotin and Thiamin Synthesis associated domain APT_RS05495 PF04055 Radical SAM superfamily APT_RS05505 PF01507 Phosphoadenosine phosphosulfate reductase family APT_RS05510 PF01507 Phosphoadenosine phosphosulfate reductase family APT_RS05515 PF00009 Elongation factor Tu GTP binding domain APT_RS05525 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APT_RS05525 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT_RS05535 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APT_RS05540 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APT_RS05550 PF00459 Inositol monophosphatase family APT_RS05560 PF02618 YceG-like family APT_RS05565 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_RS05565 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_RS05570 PF00550 Phosphopantetheine attachment site APT_RS05580 PF00698 Acyl transferase domain APT_RS05615 PF00313 'Cold-shock' DNA-binding domain APT_RS05620 PF01668 SmpB protein APT_RS05625 PF00701 Dihydrodipicolinate synthetase family APT_RS05630 PF00800 Prephenate dehydratase APT_RS05630 PF01817 Chorismate mutase type II APT_RS05630 PF01842 ACT domain APT_RS05635 PF02348 Cytidylyltransferase APT_RS05640 PF00034 Cytochrome c APT_RS05645 PF00459 Inositol monophosphatase family APT_RS05650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APT_RS05650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APT_RS05655 PF01078 Magnesium chelatase, subunit ChlI APT_RS05655 PF13335 Magnesium chelatase, subunit ChlI C-terminal APT_RS05660 PF01053 Cys/Met metabolism PLP-dependent enzyme APT_RS05665 PF00581 Rhodanese-like domain APT_RS05670 PF01594 AI-2E family transporter APT_RS05680 PF13396 Phospholipase_D-nuclease N-terminal APT_RS05680 PF13091 PLD-like domain APT_RS05685 PF02021 Uncharacterised protein family UPF0102 APT_RS05695 PF00462 Glutaredoxin APT_RS05700 PF01722 BolA-like protein APT_RS05705 PF02769 AIR synthase related protein, C-terminal domain APT_RS05705 PF00586 AIR synthase related protein, N-terminal domain APT_RS05705 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APT_RS05720 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase APT_RS05725 PF01259 SAICAR synthetase APT_RS05730 PF10397 Adenylosuccinate lyase C-terminus APT_RS05730 PF00206 Lyase APT_RS05735 PF03741 Integral membrane protein TerC family APT_RS05740 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APT_RS05740 PF01464 Transglycosylase SLT domain APT_RS05750 PF02464 Competence-damaged protein APT_RS05765 PF04055 Radical SAM superfamily APT_RS05770 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS05770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APT_RS05775 PF00364 Biotin-requiring enzyme APT_RS05775 PF02817 e3 binding domain APT_RS05775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APT_RS05780 PF02780 Transketolase, C-terminal domain APT_RS05780 PF00364 Biotin-requiring enzyme APT_RS05780 PF02779 Transketolase, pyrimidine binding domain APT_RS05785 PF00676 Dehydrogenase E1 component APT_RS05790 PF01967 MoaC family APT_RS05795 PF00218 Indole-3-glycerol phosphate synthase APT_RS05800 PF00591 Glycosyl transferase family, a/b domain APT_RS05800 PF02885 Glycosyl transferase family, helical bundle domain APT_RS05805 PF00117 Glutamine amidotransferase class-I APT_RS05810 PF04715 Anthranilate synthase component I, N terminal region APT_RS05810 PF00425 chorismate binding enzyme APT_RS05820 PF00121 Triosephosphate isomerase APT_RS05830 PF06418 CTP synthase N-terminus APT_RS05830 PF00117 Glutamine amidotransferase class-I APT_RS05835 PF00793 DAHP synthetase I family APT_RS05840 PF00204 DNA gyrase B APT_RS05840 PF00986 DNA gyrase B subunit, carboxyl terminus APT_RS05840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS05840 PF01751 Toprim domain APT_RS05845 PF02463 RecF/RecN/SMC N terminal domain APT_RS05850 PF00712 DNA polymerase III beta subunit, N-terminal domain APT_RS05850 PF02768 DNA polymerase III beta subunit, C-terminal domain APT_RS05850 PF02767 DNA polymerase III beta subunit, central domain APT_RS05855 PF00308 Bacterial dnaA protein APT_RS05855 PF08299 Bacterial dnaA protein helix-turn-helix APT_RS05855 PF11638 DnaA N-terminal domain APT_RS05860 PF01649 Ribosomal protein S20 APT_RS05865 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APT_RS05865 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APT_RS05865 PF06827 Zinc finger found in FPG and IleRS APT_RS05870 PF01209 ubiE/COQ5 methyltransferase family APT_RS05875 PF04127 DNA / pantothenate metabolism flavoprotein APT_RS05875 PF02441 Flavoprotein APT_RS05880 PF00692 dUTPase APT_RS05885 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS05890 PF00005 ABC transporter APT_RS05895 PF01625 Peptide methionine sulfoxide reductase APT_RS05900 PF08264 Anticodon-binding domain of tRNA APT_RS05900 PF00133 tRNA synthetases class I (I, L, M and V) APT_RS05900 PF10458 Valyl tRNA synthetase tRNA binding arm APT_RS05910 PF02321 Outer membrane efflux protein APT_RS05925 PF13356 Arm DNA-binding domain APT_RS05925 PF00589 Phage integrase family APT_RS05995 PF02899 Phage integrase, N-terminal SAM-like domain APT_RS05995 PF00589 Phage integrase family APT_RS06100 PF02769 AIR synthase related protein, C-terminal domain APT_RS06100 PF00586 AIR synthase related protein, N-terminal domain APT_RS06105 PF01029 NusB family APT_RS06110 PF03477 ATP cone domain APT_RS06120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APT_RS06120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APT_RS06125 PF00230 Major intrinsic protein APT_RS06130 PF16901 C-terminal domain of alpha-glycerophosphate oxidase APT_RS06130 PF01266 FAD dependent oxidoreductase APT_RS06135 PF08220 DeoR-like helix-turn-helix domain APT_RS06135 PF00455 DeoR C terminal sensor domain APT_RS06140 PF00271 Helicase conserved C-terminal domain APT_RS06140 PF00270 DEAD/DEAH box helicase APT_RS06140 PF09382 RQC domain APT_RS06140 PF00570 HRDC domain APT_RS06140 PF16124 RecQ zinc-binding APT_RS06150 PF00005 ABC transporter APT_RS06150 PF00664 ABC transporter transmembrane region APT_RS06155 PF00005 ABC transporter APT_RS06155 PF00664 ABC transporter transmembrane region APT_RS06160 PF07568 Histidine kinase APT_RS06160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS06160 PF12282 Signal transduction histidine kinase APT_RS06170 PF04542 Sigma-70 region 2 APT_RS06170 PF08281 Sigma-70, region 4 APT_RS06175 PF04542 Sigma-70 region 2 APT_RS06175 PF08281 Sigma-70, region 4 APT_RS06180 PF00072 Response regulator receiver domain APT_RS06185 PF00005 ABC transporter APT_RS06185 PF16326 ABC transporter C-terminal domain APT_RS06190 PF01204 Trehalase APT_RS06195 PF00107 Zinc-binding dehydrogenase APT_RS06195 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS06200 PF08274 PhnA Zinc-Ribbon APT_RS06200 PF03831 PhnA domain APT_RS06215 PF02567 Phenazine biosynthesis-like protein APT_RS06220 PF01979 Amidohydrolase family APT_RS06235 PF00005 ABC transporter APT_RS06250 PF01979 Amidohydrolase family APT_RS06260 PF01546 Peptidase family M20/M25/M40 APT_RS06260 PF07687 Peptidase dimerisation domain APT_RS06265 PF00266 Aminotransferase class-V APT_RS06280 PF01425 Amidase APT_RS06290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_RS06290 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT_RS06295 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS06295 PF01799 [2Fe-2S] binding domain APT_RS06300 PF00860 Permease family APT_RS06305 PF00576 HIUase/Transthyretin family APT_RS06320 PF13454 FAD-NAD(P)-binding APT_RS06330 PF01979 Amidohydrolase family APT_RS06340 PF02472 Biopolymer transport protein ExbD/TolR APT_RS06345 PF02472 Biopolymer transport protein ExbD/TolR APT_RS06350 PF01618 MotA/TolQ/ExbB proton channel family APT_RS06365 PF13533 Biotin-lipoyl like APT_RS06370 PF00005 ABC transporter APT_RS06385 PF03466 LysR substrate binding domain APT_RS06385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS06390 PF03601 Conserved hypothetical protein 698 APT_RS06400 PF13243 Squalene-hopene cyclase C-terminal domain APT_RS06400 PF13249 Squalene-hopene cyclase N-terminal domain APT_RS06405 PF17754 MftR C-terminal domain APT_RS06405 PF00440 Bacterial regulatory proteins, tetR family APT_RS06420 PF06965 Na+/H+ antiporter 1 APT_RS06425 PF00171 Aldehyde dehydrogenase family APT_RS06430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_RS06435 PF01638 HxlR-like helix-turn-helix APT_RS06440 PF18011 C-terminal domain found in long catalases APT_RS06440 PF00199 Catalase APT_RS06440 PF06628 Catalase-related immune-responsive APT_RS06445 PF00472 RF-1 domain APT_RS06455 PF10091 Putative glucoamylase APT_RS06455 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain APT_RS06455 PF06165 Glycosyltransferase family 36 APT_RS06460 PF13382 Adenine deaminase C-terminal domain APT_RS06460 PF01979 Amidohydrolase family APT_RS06465 PF00583 Acetyltransferase (GNAT) family APT_RS06470 PF08543 Phosphomethylpyrimidine kinase APT_RS06485 PF07715 TonB-dependent Receptor Plug Domain APT_RS06485 PF00593 TonB dependent receptor APT_RS06490 PF06472 ABC transporter transmembrane region 2 APT_RS06490 PF00005 ABC transporter APT_RS06505 PF00012 Hsp70 protein APT_RS06510 PF02321 Outer membrane efflux protein APT_RS06515 PF00873 AcrB/AcrD/AcrF family APT_RS06545 PF07690 Major Facilitator Superfamily APT_RS06550 PF04909 Amidohydrolase APT_RS06575 PF04073 Aminoacyl-tRNA editing domain APT_RS06580 PF07690 Major Facilitator Superfamily APT_RS06595 PF02472 Biopolymer transport protein ExbD/TolR APT_RS06600 PF01618 MotA/TolQ/ExbB proton channel family APT_RS06615 PF07715 TonB-dependent Receptor Plug Domain APT_RS06615 PF00593 TonB dependent receptor APT_RS06625 PF12680 SnoaL-like domain APT_RS06625 PF08281 Sigma-70, region 4 APT_RS06625 PF04542 Sigma-70 region 2 APT_RS06630 PF00593 TonB dependent receptor APT_RS06630 PF07715 TonB-dependent Receptor Plug Domain APT_RS06640 PF04542 Sigma-70 region 2 APT_RS06640 PF04545 Sigma-70, region 4 APT_RS06640 PF04539 Sigma-70 region 3 APT_RS06645 PF09084 NMT1/THI5 like APT_RS06650 PF00005 ABC transporter APT_RS06655 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS06665 PF02668 Taurine catabolism dioxygenase TauD, TfdA family APT_RS06680 PF07690 Major Facilitator Superfamily APT_RS06690 PF07690 Major Facilitator Superfamily APT_RS06695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS06695 PF03466 LysR substrate binding domain APT_RS06700 PF00920 Dehydratase family APT_RS06705 PF03328 HpcH/HpaI aldolase/citrate lyase family APT_RS06710 PF13382 Adenine deaminase C-terminal domain APT_RS06710 PF01979 Amidohydrolase family APT_RS06715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS06720 PF00465 Iron-containing alcohol dehydrogenase APT_RS06725 PF00083 Sugar (and other) transporter APT_RS06730 PF00171 Aldehyde dehydrogenase family APT_RS06740 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS06745 PF00005 ABC transporter APT_RS06750 PF01402 Ribbon-helix-helix protein, copG family APT_RS06750 PF08753 NikR C terminal nickel binding domain APT_RS06760 PF09347 Domain of unknown function (DUF1989) APT_RS06765 PF02785 Biotin carboxylase C-terminal domain APT_RS06765 PF00364 Biotin-requiring enzyme APT_RS06765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_RS06765 PF00289 Biotin carboxylase, N-terminal domain APT_RS06770 PF01425 Amidase APT_RS06775 PF07859 alpha/beta hydrolase fold APT_RS06780 PF13195 Protein of unknown function (DUF4011) APT_RS06780 PF13086 AAA domain APT_RS06780 PF13086 AAA domain APT_RS06780 PF13195 Protein of unknown function (DUF4011) APT_RS06780 PF13087 AAA domain APT_RS06780 PF13087 AAA domain APT_RS06790 PF07715 TonB-dependent Receptor Plug Domain APT_RS06790 PF00593 TonB dependent receptor APT_RS06795 PF01126 Heme oxygenase APT_RS06805 PF00005 ABC transporter APT_RS06810 PF01032 FecCD transport family APT_RS06815 PF01497 Periplasmic binding protein APT_RS06825 PF02742 Iron dependent repressor, metal binding and dimerisation domain APT_RS06825 PF01325 Iron dependent repressor, N-terminal DNA binding domain APT_RS06830 PF01566 Natural resistance-associated macrophage protein APT_RS06860 PF00561 alpha/beta hydrolase fold APT_RS06865 PF00909 Ammonium Transporter Family APT_RS06875 PF01179 Copper amine oxidase, enzyme domain APT_RS06875 PF02728 Copper amine oxidase, N3 domain APT_RS06875 PF02727 Copper amine oxidase, N2 domain APT_RS06890 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_RS06890 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_RS06895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_RS06900 PF00106 short chain dehydrogenase APT_RS06905 PF12833 Helix-turn-helix domain APT_RS06905 PF02311 AraC-like ligand binding domain APT_RS06910 PF00149 Calcineurin-like phosphoesterase APT_RS06910 PF10518 TAT (twin-arginine translocation) pathway signal sequence APT_RS06920 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_RS06920 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APT_RS06925 PF01799 [2Fe-2S] binding domain APT_RS06925 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS06940 PF00664 ABC transporter transmembrane region APT_RS06940 PF00005 ABC transporter APT_RS06940 PF03412 Peptidase C39 family APT_RS06975 PF01613 Flavin reductase like domain APT_RS06990 PF00296 Luciferase-like monooxygenase APT_RS06995 PF00296 Luciferase-like monooxygenase APT_RS07010 PF00881 Nitroreductase family APT_RS07015 PF07715 TonB-dependent Receptor Plug Domain APT_RS07015 PF00593 TonB dependent receptor APT_RS07025 PF02384 N-6 DNA Methylase APT_RS07025 PF12161 HsdM N-terminal domain APT_RS07030 PF01420 Type I restriction modification DNA specificity domain APT_RS07035 PF18766 SWI2/SNF2 ATPase APT_RS07035 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APT_RS07035 PF11867 Domain of unknown function (DUF3387) APT_RS07050 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APT_RS07055 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_RS07055 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_RS07055 PF16197 Ketoacyl-synthetase C-terminal extension APT_RS07055 PF00668 Condensation domain APT_RS07055 PF13193 AMP-binding enzyme C-terminal domain APT_RS07055 PF00501 AMP-binding enzyme APT_RS07055 PF00202 Aminotransferase class-III APT_RS07055 PF00550 Phosphopantetheine attachment site APT_RS07060 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_RS07060 PF14765 Polyketide synthase dehydratase APT_RS07060 PF08659 KR domain APT_RS07060 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_RS07060 PF00550 Phosphopantetheine attachment site APT_RS07060 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS07060 PF00698 Acyl transferase domain APT_RS07060 PF16197 Ketoacyl-synthetase C-terminal extension APT_RS07065 PF13193 AMP-binding enzyme C-terminal domain APT_RS07065 PF00501 AMP-binding enzyme APT_RS07080 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_RS07100 PF00069 Protein kinase domain APT_RS07100 PF03793 PASTA domain APT_RS07115 PF02384 N-6 DNA Methylase APT_RS07115 PF12161 HsdM N-terminal domain APT_RS07135 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_RS07150 PF01464 Transglycosylase SLT domain APT_RS07170 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_RS07210 PF17755 UvrA DNA-binding domain APT_RS07215 PF00375 Sodium:dicarboxylate symporter family APT_RS07220 PF05724 Thiopurine S-methyltransferase (TPMT) APT_RS07225 PF13417 Glutathione S-transferase, N-terminal domain APT_RS07225 PF04399 Glutaredoxin 2, C terminal domain APT_RS07230 PF07690 Major Facilitator Superfamily APT_RS07235 PF01888 CbiD APT_RS07240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_RS07250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_RS07255 PF02571 Precorrin-6x reductase CbiJ/CobK APT_RS07260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_RS07265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_RS07270 PF02570 Precorrin-8X methylmutase APT_RS07275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APT_RS07285 PF10415 Fumarase C C-terminus APT_RS07285 PF00206 Lyase APT_RS07295 PF00158 Sigma-54 interaction domain APT_RS07295 PF02954 Bacterial regulatory protein, Fis family APT_RS07295 PF02830 V4R domain APT_RS07295 PF06505 Activator of aromatic catabolism APT_RS07305 PF01011 PQQ enzyme repeat APT_RS07335 PF01594 AI-2E family transporter APT_RS07345 PF00871 Acetokinase family APT_RS07350 PF01515 Phosphate acetyl/butaryl transferase APT_RS07355 PF01070 FMN-dependent dehydrogenase APT_RS07360 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APT_RS07360 PF10371 Domain of unknown function APT_RS07360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_RS07360 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APT_RS07360 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APT_RS07365 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT_RS07365 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS07380 PF02659 Putative manganese efflux pump APT_RS07385 PF14497 Glutathione S-transferase, C-terminal domain APT_RS07385 PF02798 Glutathione S-transferase, N-terminal domain APT_RS07390 PF02634 FdhD/NarQ family APT_RS07395 PF12804 MobA-like NTP transferase domain APT_RS07400 PF03205 Molybdopterin guanine dinucleotide synthesis protein B APT_RS07405 PF00994 Probable molybdopterin binding domain APT_RS07405 PF03453 MoeA N-terminal region (domain I and II) APT_RS07405 PF03454 MoeA C-terminal region (domain IV) APT_RS07410 PF04216 Protein involved in formate dehydrogenase formation APT_RS07415 PF01292 Prokaryotic cytochrome b561 APT_RS07420 PF13247 4Fe-4S dicluster domain APT_RS07420 PF09163 Formate dehydrogenase N, transmembrane APT_RS07425 PF00384 Molybdopterin oxidoreductase APT_RS07425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APT_RS07425 PF01568 Molydopterin dinucleotide binding domain APT_RS07435 PF02541 Ppx/GppA phosphatase family APT_RS07440 PF01728 FtsJ-like methyltransferase APT_RS07445 PF00480 ROK family APT_RS07450 PF01206 Sulfurtransferase TusA APT_RS07455 PF02609 Exonuclease VII small subunit APT_RS07460 PF00348 Polyprenyl synthetase APT_RS07465 PF02780 Transketolase, C-terminal domain APT_RS07465 PF02779 Transketolase, pyrimidine binding domain APT_RS07465 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APT_RS07470 PF01728 FtsJ-like methyltransferase APT_RS07470 PF01479 S4 domain APT_RS07480 PF04055 Radical SAM superfamily APT_RS07485 PF00764 Arginosuccinate synthase APT_RS07490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT_RS07490 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APT_RS07500 PF00579 tRNA synthetases class I (W and Y) APT_RS07515 PF00072 Response regulator receiver domain APT_RS07515 PF00486 Transcriptional regulatory protein, C terminal APT_RS07530 PF01029 NusB family APT_RS07530 PF01189 16S rRNA methyltransferase RsmB/F APT_RS07535 PF00478 IMP dehydrogenase / GMP reductase domain APT_RS07535 PF00571 CBS domain APT_RS07540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APT_RS07545 PF12911 N-terminal TM domain of oligopeptide transport permease C APT_RS07545 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS07550 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS07555 PF00005 ABC transporter APT_RS07555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT_RS07560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APT_RS07560 PF00005 ABC transporter APT_RS07565 PF03060 Nitronate monooxygenase APT_RS07570 PF01569 PAP2 superfamily APT_RS07585 PF04185 Phosphoesterase family APT_RS07585 PF05506 Domain of unknown function (DUF756) APT_RS07610 PF07690 Major Facilitator Superfamily APT_RS07625 PF03551 Transcriptional regulator PadR-like family APT_RS07635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APT_RS07635 PF00529 HlyD membrane-fusion protein of T1SS APT_RS07640 PF04632 Fusaric acid resistance protein family APT_RS07650 PF04055 Radical SAM superfamily APT_RS07650 PF02310 B12 binding domain APT_RS07650 PF13282 Domain of unknown function (DUF4070) APT_RS07665 PF07715 TonB-dependent Receptor Plug Domain APT_RS07665 PF00593 TonB dependent receptor APT_RS07670 PF05552 Conserved TM helix APT_RS07670 PF00924 Mechanosensitive ion channel APT_RS07675 PF07995 Glucose / Sorbosone dehydrogenase APT_RS07685 PF02322 Cytochrome bd terminal oxidase subunit II APT_RS07690 PF01654 Cytochrome bd terminal oxidase subunit I APT_RS07695 PF00664 ABC transporter transmembrane region APT_RS07695 PF00005 ABC transporter APT_RS07700 PF00664 ABC transporter transmembrane region APT_RS07700 PF00005 ABC transporter APT_RS07710 PF13640 2OG-Fe(II) oxygenase superfamily APT_RS07710 PF18331 PKHD-type hydroxylase C-terminal domain APT_RS07715 PF07715 TonB-dependent Receptor Plug Domain APT_RS07715 PF00593 TonB dependent receptor APT_RS07730 PF00710 Asparaginase, N-terminal APT_RS07730 PF17763 Glutaminase/Asparaginase C-terminal domain APT_RS07735 PF00155 Aminotransferase class I and II APT_RS07740 PF06826 Predicted Permease Membrane Region APT_RS07740 PF02080 TrkA-C domain APT_RS07770 PF00005 ABC transporter APT_RS07770 PF12848 ABC transporter APT_RS07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS07775 PF03466 LysR substrate binding domain APT_RS07785 PF00593 TonB dependent receptor APT_RS07785 PF07715 TonB-dependent Receptor Plug Domain APT_RS07790 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS07790 PF00107 Zinc-binding dehydrogenase APT_RS07800 PF05974 Domain of unknown function (DUF892) APT_RS07810 PF02308 MgtC family APT_RS07825 PF02515 CoA-transferase family III APT_RS07830 PF00205 Thiamine pyrophosphate enzyme, central domain APT_RS07830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_RS07830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_RS07835 PF02515 CoA-transferase family III APT_RS07870 PF07690 Major Facilitator Superfamily APT_RS07875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT_RS07875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT_RS07875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT_RS07875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT_RS07880 PF12464 Maltose acetyltransferase APT_RS07880 PF14602 Hexapeptide repeat of succinyl-transferase APT_RS07900 PF07660 Secretin and TonB N terminus short domain APT_RS07900 PF07715 TonB-dependent Receptor Plug Domain APT_RS07900 PF00593 TonB dependent receptor APT_RS07915 PF03929 PepSY-associated TM region APT_RS07925 PF00593 TonB dependent receptor APT_RS07925 PF07715 TonB-dependent Receptor Plug Domain APT_RS07950 PF00512 His Kinase A (phospho-acceptor) domain APT_RS07950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS07950 PF08521 Two-component sensor kinase N-terminal APT_RS07955 PF00072 Response regulator receiver domain APT_RS07955 PF00486 Transcriptional regulatory protein, C terminal APT_RS07960 PF00873 AcrB/AcrD/AcrF family APT_RS07980 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_RS08055 PF01850 PIN domain APT_RS08060 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APT_RS08075 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_RS08085 PF00271 Helicase conserved C-terminal domain APT_RS08145 PF01527 Transposase APT_RS08150 PF13276 HTH-like domain APT_RS08150 PF00665 Integrase core domain APT_RS08150 PF13333 Integrase core domain APT_RS08155 PF00899 ThiF family APT_RS08175 PF00665 Integrase core domain APT_RS08175 PF13333 Integrase core domain APT_RS08175 PF13276 HTH-like domain APT_RS08180 PF01527 Transposase APT_RS08215 PF12833 Helix-turn-helix domain APT_RS08215 PF01965 DJ-1/PfpI family APT_RS08220 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain APT_RS08220 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain APT_RS08235 PF07690 Major Facilitator Superfamily APT_RS08265 PF01527 Transposase APT_RS08270 PF00665 Integrase core domain APT_RS08270 PF13276 HTH-like domain APT_RS08270 PF13333 Integrase core domain APT_RS08295 PF01527 Transposase APT_RS08300 PF00665 Integrase core domain APT_RS08300 PF13936 Helix-turn-helix domain APT_RS08350 PF13742 OB-fold nucleic acid binding domain APT_RS08350 PF02601 Exonuclease VII, large subunit APT_RS08370 PF12833 Helix-turn-helix domain APT_RS08370 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term APT_RS08385 PF01757 Acyltransferase family APT_RS08465 PF00501 AMP-binding enzyme APT_RS08475 PF00155 Aminotransferase class I and II APT_RS08490 PF00149 Calcineurin-like phosphoesterase APT_RS08515 PF13419 Haloacid dehalogenase-like hydrolase APT_RS08520 PF12804 MobA-like NTP transferase domain APT_RS08520 PF00132 Bacterial transferase hexapeptide (six repeats) APT_RS08520 PF14602 Hexapeptide repeat of succinyl-transferase APT_RS08525 PF01380 SIS domain APT_RS08540 PF00255 Glutathione peroxidase APT_RS08545 PF00005 ABC transporter APT_RS08550 PF02687 FtsX-like permease family APT_RS08550 PF12704 MacB-like periplasmic core domain APT_RS08555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_RS08555 PF03129 Anticodon binding domain APT_RS08560 PF17770 Ribonuclease J C-terminal domain APT_RS08560 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APT_RS08560 PF12706 Beta-lactamase superfamily domain APT_RS08565 PF03309 Type III pantothenate kinase APT_RS08570 PF03099 Biotin/lipoate A/B protein ligase family APT_RS08570 PF02237 Biotin protein ligase C terminal domain APT_RS08575 PF00361 Proton-conducting membrane transporter APT_RS08580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APT_RS08580 PF00361 Proton-conducting membrane transporter APT_RS08585 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L APT_RS08590 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 APT_RS08595 PF12838 4Fe-4S dicluster domain APT_RS08600 PF00146 NADH dehydrogenase APT_RS08605 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region APT_RS08605 PF00384 Molybdopterin oxidoreductase APT_RS08605 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal APT_RS08610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APT_RS08610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region APT_RS08610 PF10531 SLBB domain APT_RS08620 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APT_RS08625 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APT_RS08630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APT_RS08635 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 APT_RS08650 PF00216 Bacterial DNA-binding protein APT_RS08655 PF02190 ATP-dependent protease La (LON) substrate-binding domain APT_RS08655 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS08655 PF05362 Lon protease (S16) C-terminal proteolytic domain APT_RS08660 PF07724 AAA domain (Cdc48 subfamily) APT_RS08660 PF06689 ClpX C4-type zinc finger APT_RS08660 PF10431 C-terminal, D2-small domain, of ClpB protein APT_RS08665 PF00574 Clp protease APT_RS08670 PF05697 Bacterial trigger factor protein (TF) APT_RS08670 PF05698 Bacterial trigger factor protein (TF) C-terminus APT_RS08670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APT_RS08680 PF01256 Carbohydrate kinase APT_RS08680 PF03853 YjeF-related protein N-terminus APT_RS08695 PF00271 Helicase conserved C-terminal domain APT_RS08695 PF00270 DEAD/DEAH box helicase APT_RS08700 PF05958 tRNA (Uracil-5-)-methyltransferase APT_RS08705 PF01521 Iron-sulphur cluster biosynthesis APT_RS08710 PF01883 Iron-sulfur cluster assembly protein APT_RS08720 PF00266 Aminotransferase class-V APT_RS08725 PF01458 Uncharacterized protein family (UPF0051) APT_RS08730 PF00005 ABC transporter APT_RS08735 PF01458 Uncharacterized protein family (UPF0051) APT_RS08740 PF02082 Transcriptional regulator APT_RS08745 PF04286 Protein of unknown function (DUF445) APT_RS08750 PF00311 Phosphoenolpyruvate carboxylase APT_RS08760 PF00009 Elongation factor Tu GTP binding domain APT_RS08760 PF03764 Elongation factor G, domain IV APT_RS08760 PF14492 Elongation Factor G, domain II APT_RS08760 PF00679 Elongation factor G C-terminus APT_RS08760 PF03144 Elongation factor Tu domain 2 APT_RS08765 PF00830 Ribosomal L28 family APT_RS08775 PF00005 ABC transporter APT_RS08775 PF00664 ABC transporter transmembrane region APT_RS08785 PF01966 HD domain APT_RS08785 PF08335 GlnD PII-uridylyltransferase APT_RS08790 PF00488 MutS domain V APT_RS08790 PF05190 MutS family domain IV APT_RS08790 PF05192 MutS domain III APT_RS08790 PF05188 MutS domain II APT_RS08790 PF01624 MutS domain I APT_RS08800 PF02074 Carboxypeptidase Taq (M32) metallopeptidase APT_RS08810 PF14821 Threonine synthase N terminus APT_RS08810 PF00291 Pyridoxal-phosphate dependent enzyme APT_RS08815 PF00675 Insulinase (Peptidase family M16) APT_RS08815 PF05193 Peptidase M16 inactive domain APT_RS08820 PF01523 Putative modulator of DNA gyrase APT_RS08835 PF01040 UbiA prenyltransferase family APT_RS08840 PF00115 Cytochrome C and Quinol oxidase polypeptide I APT_RS08845 PF01209 ubiE/COQ5 methyltransferase family APT_RS08850 PF02951 Prokaryotic glutathione synthetase, N-terminal domain APT_RS08850 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain APT_RS08865 PF01037 Lrp/AsnC ligand binding domain APT_RS08870 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS08875 PF03466 LysR substrate binding domain APT_RS08880 PF05443 ROS/MUCR transcriptional regulator protein APT_RS08885 PF00216 Bacterial DNA-binding protein APT_RS08895 PF03023 Lipid II flippase MurJ APT_RS08910 PF13411 MerR HTH family regulatory protein APT_RS08915 PF00216 Bacterial DNA-binding protein APT_RS08920 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APT_RS08920 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APT_RS08925 PF02504 Fatty acid synthesis protein APT_RS08930 PF01783 Ribosomal L32p protein family APT_RS08945 PF00672 HAMP domain APT_RS08945 PF00512 His Kinase A (phospho-acceptor) domain APT_RS08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS08950 PF00072 Response regulator receiver domain APT_RS08950 PF00486 Transcriptional regulatory protein, C terminal APT_RS08955 PF12802 MarR family APT_RS08965 PF01327 Polypeptide deformylase APT_RS08970 PF01165 Ribosomal protein S21 APT_RS08975 PF00180 Isocitrate/isopropylmalate dehydrogenase APT_RS08980 PF00694 Aconitase C-terminal domain APT_RS08985 PF00330 Aconitase family (aconitate hydratase) APT_RS08990 PF01245 Ribosomal protein L19 APT_RS08995 PF01746 tRNA (Guanine-1)-methyltransferase APT_RS09000 PF01782 RimM N-terminal domain APT_RS09005 PF00886 Ribosomal protein S16 APT_RS09010 PF00448 SRP54-type protein, GTPase domain APT_RS09010 PF02881 SRP54-type protein, helical bundle domain APT_RS09010 PF02978 Signal peptide binding domain APT_RS09030 PF00849 RNA pseudouridylate synthase APT_RS09030 PF01479 S4 domain APT_RS09035 PF16193 AAA C-terminal domain APT_RS09035 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS09035 PF12002 MgsA AAA+ ATPase C terminal APT_RS09045 PF01040 UbiA prenyltransferase family APT_RS09050 PF04452 RNA methyltransferase APT_RS09055 PF04107 Glutamate-cysteine ligase family 2(GCS2) APT_RS09060 PF07690 Major Facilitator Superfamily APT_RS09065 PF01926 50S ribosome-binding GTPase APT_RS09065 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APT_RS09070 PF13360 PQQ-like domain APT_RS09090 PF00534 Glycosyl transferases group 1 APT_RS09090 PF13439 Glycosyltransferase Family 4 APT_RS09095 PF00733 Asparagine synthase APT_RS09095 PF13537 Glutamine amidotransferase domain APT_RS09100 PF01571 Aminomethyltransferase folate-binding domain APT_RS09105 PF01502 Phosphoribosyl-AMP cyclohydrolase APT_RS09110 PF02684 Lipid-A-disaccharide synthetase APT_RS09115 PF01740 STAS domain APT_RS09115 PF00916 Sulfate permease family APT_RS09120 PF01794 Ferric reductase like transmembrane component APT_RS09135 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APT_RS09135 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APT_RS09140 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS09140 PF17871 AAA lid domain APT_RS09140 PF02861 Clp amino terminal domain, pathogenicity island component APT_RS09140 PF10431 C-terminal, D2-small domain, of ClpB protein APT_RS09140 PF07724 AAA domain (Cdc48 subfamily) APT_RS09145 PF00293 NUDIX domain APT_RS09150 PF16360 GTP-binding GTPase Middle Region APT_RS09150 PF01926 50S ribosome-binding GTPase APT_RS09150 PF13167 GTP-binding GTPase N-terminal APT_RS09155 PF17209 Hfq protein APT_RS09160 PF02954 Bacterial regulatory protein, Fis family APT_RS09160 PF00158 Sigma-54 interaction domain APT_RS09160 PF00072 Response regulator receiver domain APT_RS09165 PF00672 HAMP domain APT_RS09165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS09170 PF02954 Bacterial regulatory protein, Fis family APT_RS09170 PF00072 Response regulator receiver domain APT_RS09170 PF00158 Sigma-54 interaction domain APT_RS09175 PF00512 His Kinase A (phospho-acceptor) domain APT_RS09175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS09175 PF00989 PAS fold APT_RS09180 PF01207 Dihydrouridine synthase (Dus) APT_RS09185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APT_RS09185 PF02542 YgbB family APT_RS09190 PF00535 Glycosyl transferase family 2 APT_RS09205 PF03275 UDP-galactopyranose mutase APT_RS09215 PF16363 GDP-mannose 4,6 dehydratase APT_RS09235 PF00156 Phosphoribosyl transferase domain APT_RS09260 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APT_RS09260 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APT_RS09260 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APT_RS09270 PF00543 Nitrogen regulatory protein P-II APT_RS09275 PF00132 Bacterial transferase hexapeptide (six repeats) APT_RS09275 PF06426 Serine acetyltransferase, N-terminal APT_RS09280 PF01494 FAD binding domain APT_RS09285 PF09335 SNARE associated Golgi protein APT_RS09320 PF13358 DDE superfamily endonuclease APT_RS09325 PF02371 Transposase IS116/IS110/IS902 family APT_RS09325 PF01548 Transposase APT_RS09335 PF01132 Elongation factor P (EF-P) OB domain APT_RS09335 PF09285 Elongation factor P, C-terminal APT_RS09335 PF08207 Elongation factor P (EF-P) KOW-like domain APT_RS09340 PF00459 Inositol monophosphatase family APT_RS09345 PF04851 Type III restriction enzyme, res subunit APT_RS09345 PF13307 Helicase C-terminal domain APT_RS09350 PF00313 'Cold-shock' DNA-binding domain APT_RS09355 PF01738 Dienelactone hydrolase family APT_RS09360 PF00166 Chaperonin 10 Kd subunit APT_RS09365 PF00118 TCP-1/cpn60 chaperonin family APT_RS09415 PF00909 Ammonium Transporter Family APT_RS09430 PF00561 alpha/beta hydrolase fold APT_RS09435 PF02899 Phage integrase, N-terminal SAM-like domain APT_RS09435 PF00589 Phage integrase family APT_RS09440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APT_RS09440 PF17764 3′ DNA-binding domain (3′BD) APT_RS09440 PF00270 DEAD/DEAH box helicase APT_RS09440 PF18074 Primosomal protein N C-terminal domain APT_RS09445 PF02699 Preprotein translocase subunit APT_RS09455 PF00355 Rieske [2Fe-2S] domain APT_RS09460 PF00293 NUDIX domain APT_RS09465 PF01050 Mannose-6-phosphate isomerase APT_RS09465 PF00483 Nucleotidyl transferase APT_RS09470 PF01053 Cys/Met metabolism PLP-dependent enzyme APT_RS09475 PF04379 ApaG domain APT_RS09480 PF01227 GTP cyclohydrolase I APT_RS09490 PF00994 Probable molybdopterin binding domain APT_RS09520 PF13533 Biotin-lipoyl like APT_RS09550 PF00885 6,7-dimethyl-8-ribityllumazine synthase APT_RS09555 PF00925 GTP cyclohydrolase II APT_RS09555 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APT_RS09560 PF00677 Lumazine binding domain APT_RS09565 PF01872 RibD C-terminal domain APT_RS09565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APT_RS09570 PF00033 Cytochrome b/b6/petB APT_RS09570 PF02167 Cytochrome C1 family APT_RS09570 PF00032 Cytochrome b(C-terminal)/b6/petD APT_RS09575 PF00033 Cytochrome b/b6/petB APT_RS09575 PF02167 Cytochrome C1 family APT_RS09575 PF00032 Cytochrome b(C-terminal)/b6/petD APT_RS09580 PF00355 Rieske [2Fe-2S] domain APT_RS09580 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal APT_RS09585 PF03358 NADPH-dependent FMN reductase APT_RS09600 PF00860 Permease family APT_RS09615 PF07859 alpha/beta hydrolase fold APT_RS09630 PF00829 Ribosomal prokaryotic L21 protein APT_RS09635 PF01016 Ribosomal L27 protein APT_RS09640 PF01018 GTP1/OBG APT_RS09640 PF01926 50S ribosome-binding GTPase APT_RS09645 PF00696 Amino acid kinase family APT_RS09645 PF01472 PUA domain APT_RS09655 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) APT_RS09660 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APT_RS09660 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APT_RS09670 PF07859 alpha/beta hydrolase fold APT_RS09680 PF02381 MraZ protein, putative antitoxin-like APT_RS09685 PF01795 MraW methylase family APT_RS09695 PF00905 Penicillin binding protein transpeptidase domain APT_RS09695 PF03717 Penicillin-binding Protein dimerisation domain APT_RS09700 PF01225 Mur ligase family, catalytic domain APT_RS09700 PF02875 Mur ligase family, glutamate ligase domain APT_RS09700 PF08245 Mur ligase middle domain APT_RS09705 PF01225 Mur ligase family, catalytic domain APT_RS09705 PF02875 Mur ligase family, glutamate ligase domain APT_RS09705 PF08245 Mur ligase middle domain APT_RS09710 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APT_RS09710 PF00953 Glycosyl transferase family 4 APT_RS09715 PF02875 Mur ligase family, glutamate ligase domain APT_RS09715 PF08245 Mur ligase middle domain APT_RS09720 PF01098 Cell cycle protein APT_RS09725 PF04101 Glycosyltransferase family 28 C-terminal domain APT_RS09725 PF03033 Glycosyltransferase family 28 N-terminal domain APT_RS09730 PF08245 Mur ligase middle domain APT_RS09730 PF01225 Mur ligase family, catalytic domain APT_RS09730 PF02875 Mur ligase family, glutamate ligase domain APT_RS09735 PF01565 FAD binding domain APT_RS09735 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APT_RS09740 PF01820 D-ala D-ala ligase N-terminus APT_RS09740 PF07478 D-ala D-ala ligase C-terminus APT_RS09745 PF03799 Cell division protein FtsQ APT_RS09745 PF08478 POTRA domain, FtsQ-type APT_RS09750 PF02491 SHS2 domain inserted in FTSA APT_RS09755 PF12327 FtsZ family, C-terminal domain APT_RS09755 PF00091 Tubulin/FtsZ family, GTPase domain APT_RS09760 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APT_RS09765 PF13525 Outer membrane lipoprotein APT_RS09770 PF02463 RecF/RecN/SMC N terminal domain APT_RS09775 PF12826 Helix-hairpin-helix motif APT_RS09775 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APT_RS09775 PF03120 NAD-dependent DNA ligase OB-fold domain APT_RS09775 PF01653 NAD-dependent DNA ligase adenylation domain APT_RS09775 PF00533 BRCA1 C Terminus (BRCT) domain APT_RS09780 PF00391 PEP-utilising enzyme, mobile domain APT_RS09780 PF02896 PEP-utilising enzyme, TIM barrel domain APT_RS09780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APT_RS09785 PF03618 Kinase/pyrophosphorylase APT_RS09795 PF01205 Uncharacterized protein family UPF0029 APT_RS09810 PF01474 Class-II DAHP synthetase family APT_RS09825 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT_RS09830 PF00857 Isochorismatase family APT_RS09840 PF00403 Heavy-metal-associated domain APT_RS09850 PF00394 Multicopper oxidase APT_RS09850 PF07731 Multicopper oxidase APT_RS09850 PF07732 Multicopper oxidase APT_RS09855 PF05275 Copper resistance protein B precursor (CopB) APT_RS09860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APT_RS09860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APT_RS09865 PF10369 Small subunit of acetolactate synthase APT_RS09870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_RS09870 PF00205 Thiamine pyrophosphate enzyme, central domain APT_RS09870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_RS09895 PF00270 DEAD/DEAH box helicase APT_RS09895 PF00271 Helicase conserved C-terminal domain APT_RS09915 PF00464 Serine hydroxymethyltransferase APT_RS09920 PF13520 Amino acid permease APT_RS09925 PF00490 Delta-aminolevulinic acid dehydratase APT_RS09930 PF04376 Arginine-tRNA-protein transferase, N terminus APT_RS09930 PF04377 Arginine-tRNA-protein transferase, C terminus APT_RS09935 PF00521 DNA gyrase/topoisomerase IV, subunit A APT_RS09935 PF03989 DNA gyrase C-terminal domain, beta-propeller APT_RS09940 PF02565 Recombination protein O C terminal APT_RS09940 PF11967 Recombination protein O N terminal APT_RS09945 PF00889 Elongation factor TS APT_RS09950 PF00318 Ribosomal protein S2 APT_RS09955 PF00355 Rieske [2Fe-2S] domain APT_RS09970 PF01063 Amino-transferase class IV APT_RS09975 PF00425 chorismate binding enzyme APT_RS09975 PF04715 Anthranilate synthase component I, N terminal region APT_RS09980 PF02811 PHP domain APT_RS09980 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT_RS09980 PF14579 Helix-hairpin-helix motif APT_RS09980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT_RS09985 PF02569 Pantoate-beta-alanine ligase APT_RS09990 PF01042 Endoribonuclease L-PSP APT_RS10005 PF00155 Aminotransferase class I and II APT_RS10010 PF00155 Aminotransferase class I and II APT_RS10015 PF00749 tRNA synthetases class I (E and Q), catalytic domain APT_RS10040 PF04055 Radical SAM superfamily APT_RS10040 PF02310 B12 binding domain APT_RS10045 PF00334 Nucleoside diphosphate kinase APT_RS10050 PF00005 ABC transporter APT_RS10050 PF12848 ABC transporter APT_RS10060 PF00072 Response regulator receiver domain APT_RS10060 PF00486 Transcriptional regulatory protein, C terminal APT_RS10065 PF00512 His Kinase A (phospho-acceptor) domain APT_RS10065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS10065 PF00672 HAMP domain APT_RS10075 PF00707 Translation initiation factor IF-3, C-terminal domain APT_RS10075 PF05198 Translation initiation factor IF-3, N-terminal domain APT_RS10080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT_RS10080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_RS10080 PF03129 Anticodon binding domain APT_RS10080 PF02824 TGS domain APT_RS10100 PF01513 ATP-NAD kinase APT_RS10115 PF00075 RNase H APT_RS10120 PF01636 Phosphotransferase enzyme family APT_RS10125 PF02401 LytB protein APT_RS10135 PF03109 ABC1 family APT_RS10145 PF01493 GXGXG motif APT_RS10145 PF01645 Conserved region in glutamate synthase APT_RS10145 PF04898 Glutamate synthase central domain APT_RS10145 PF00310 Glutamine amidotransferases class-II APT_RS10150 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS10150 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT_RS10170 PF01520 N-acetylmuramoyl-L-alanine amidase APT_RS10175 PF10150 Ribonuclease E/G family APT_RS10175 PF00575 S1 RNA binding domain APT_RS10175 PF12111 Polyribonucleotide phosphorylase C terminal APT_RS10180 PF01634 ATP phosphoribosyltransferase APT_RS10185 PF00815 Histidinol dehydrogenase APT_RS10190 PF01176 Translation initiation factor 1A / IF-1 APT_RS10195 PF02545 Maf-like protein APT_RS10205 PF03884 DNA gyrase inhibitor YacG APT_RS10330 PF00589 Phage integrase family APT_RS10330 PF02899 Phage integrase, N-terminal SAM-like domain APT_RS10415 PF01381 Helix-turn-helix APT_RS10425 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) APT_RS10440 PF00589 Phage integrase family APT_RS10460 PF00171 Aldehyde dehydrogenase family APT_RS10465 PF09330 D-lactate dehydrogenase, membrane binding APT_RS10465 PF01565 FAD binding domain APT_RS10470 PF10005 zinc-ribbon domain APT_RS10470 PF15887 Putative zinc-binding metallo-peptidase APT_RS10480 PF14403 Circularly permuted ATP-grasp type 2 APT_RS10490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain APT_RS10490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain APT_RS10495 PF02445 Quinolinate synthetase A protein APT_RS10505 PF16925 Tetracyclin repressor-like, C-terminal domain APT_RS10505 PF00440 Bacterial regulatory proteins, tetR family APT_RS10510 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS10515 PF00171 Aldehyde dehydrogenase family APT_RS10520 PF07690 Major Facilitator Superfamily APT_RS10530 PF03358 NADPH-dependent FMN reductase APT_RS10535 PF02678 Pirin APT_RS10535 PF05726 Pirin C-terminal cupin domain APT_RS10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS10540 PF03466 LysR substrate binding domain APT_RS10550 PF02472 Biopolymer transport protein ExbD/TolR APT_RS10555 PF02472 Biopolymer transport protein ExbD/TolR APT_RS10560 PF01618 MotA/TolQ/ExbB proton channel family APT_RS10580 PF00892 EamA-like transporter family APT_RS10585 PF03746 LamB/YcsF family APT_RS10590 PF02626 Carboxyltransferase domain, subdomain A and B APT_RS10600 PF00106 short chain dehydrogenase APT_RS10610 PF00289 Biotin carboxylase, N-terminal domain APT_RS10610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_RS10610 PF02785 Biotin carboxylase C-terminal domain APT_RS10620 PF00155 Aminotransferase class I and II APT_RS10625 PF03466 LysR substrate binding domain APT_RS10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS10630 PF01425 Amidase APT_RS10635 PF00106 short chain dehydrogenase APT_RS10640 PF00128 Alpha amylase, catalytic domain APT_RS10645 PF00128 Alpha amylase, catalytic domain APT_RS10645 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT_RS10645 PF11941 Domain of unknown function (DUF3459) APT_RS10650 PF00128 Alpha amylase, catalytic domain APT_RS10650 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT_RS10650 PF02806 Alpha amylase, C-terminal all-beta domain APT_RS10655 PF00534 Glycosyl transferases group 1 APT_RS10655 PF08323 Starch synthase catalytic domain APT_RS10660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APT_RS10660 PF00128 Alpha amylase, catalytic domain APT_RS10675 PF00205 Thiamine pyrophosphate enzyme, central domain APT_RS10675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_RS10675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_RS10680 PF01494 FAD binding domain APT_RS10685 PF02630 SCO1/SenC APT_RS10730 PF02384 N-6 DNA Methylase APT_RS10730 PF12161 HsdM N-terminal domain APT_RS10740 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APT_RS10740 PF11867 Domain of unknown function (DUF3387) APT_RS10740 PF18766 SWI2/SNF2 ATPase APT_RS10750 PF08659 KR domain APT_RS10750 PF00698 Acyl transferase domain APT_RS10750 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_RS10750 PF16197 Ketoacyl-synthetase C-terminal extension APT_RS10750 PF00550 Phosphopantetheine attachment site APT_RS10750 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_RS10755 PF00271 Helicase conserved C-terminal domain APT_RS10770 PF09386 Antitoxin ParD APT_RS10775 PF05016 ParE toxin of type II toxin-antitoxin system, parDE APT_RS10820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS10820 PF03466 LysR substrate binding domain APT_RS10825 PF04632 Fusaric acid resistance protein family APT_RS10850 PF02683 Cytochrome C biogenesis protein transmembrane region APT_RS10850 PF11412 Disulphide bond corrector protein DsbC APT_RS10855 PF00893 Small Multidrug Resistance protein APT_RS10860 PF02403 Seryl-tRNA synthetase N-terminal domain APT_RS10860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_RS10865 PF00902 Sec-independent protein translocase protein (TatC) APT_RS10870 PF02416 mttA/Hcf106 family APT_RS10875 PF04079 Segregation and condensation complex subunit ScpB APT_RS10880 PF02616 Segregation and condensation protein ScpA APT_RS10890 PF03485 Arginyl tRNA synthetase N terminal domain APT_RS10890 PF05746 DALR anticodon binding domain APT_RS10890 PF00750 tRNA synthetases class I (R) APT_RS10895 PF01966 HD domain APT_RS10895 PF13286 Phosphohydrolase-associated domain APT_RS10900 PF01521 Iron-sulphur cluster biosynthesis APT_RS10905 PF03372 Endonuclease/Exonuclease/phosphatase family APT_RS10925 PF12706 Beta-lactamase superfamily domain APT_RS10930 PF03070 TENA/THI-4/PQQC family APT_RS10935 PF05402 Coenzyme PQQ synthesis protein D (PqqD) APT_RS10940 PF04055 Radical SAM superfamily APT_RS10940 PF13186 Iron-sulfur cluster-binding domain APT_RS10950 PF00574 Clp protease APT_RS10960 PF00155 Aminotransferase class I and II APT_RS10965 PF01842 ACT domain APT_RS10965 PF03447 Homoserine dehydrogenase, NAD binding domain APT_RS10965 PF00742 Homoserine dehydrogenase APT_RS10970 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APT_RS10975 PF01368 DHH family APT_RS10975 PF17768 RecJ OB domain APT_RS10975 PF02272 DHHA1 domain APT_RS10980 PF04545 Sigma-70, region 4 APT_RS10980 PF00140 Sigma-70 factor, region 1.2 APT_RS10980 PF04542 Sigma-70 region 2 APT_RS10985 PF00849 RNA pseudouridylate synthase APT_RS10990 PF01032 FecCD transport family APT_RS10995 PF00005 ABC transporter APT_RS11000 PF02696 Uncharacterized ACR, YdiU/UPF0061 family APT_RS11010 PF01063 Amino-transferase class IV APT_RS11015 PF01367 5'-3' exonuclease, C-terminal SAM fold APT_RS11015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APT_RS11015 PF01612 3'-5' exonuclease APT_RS11015 PF00476 DNA polymerase family A APT_RS11030 PF00083 Sugar (and other) transporter APT_RS11030 PF08946 Osmosensory transporter coiled coil APT_RS11040 PF02322 Cytochrome bd terminal oxidase subunit II APT_RS11045 PF01654 Cytochrome bd terminal oxidase subunit I APT_RS11055 PF04454 Encapsulating protein for peroxidase APT_RS11060 PF00324 Amino acid permease APT_RS11070 PF13360 PQQ-like domain APT_RS11070 PF01011 PQQ enzyme repeat APT_RS11080 PF14552 Tautomerase enzyme APT_RS11085 PF00202 Aminotransferase class-III APT_RS11090 PF00392 Bacterial regulatory proteins, gntR family APT_RS11090 PF00155 Aminotransferase class I and II APT_RS11095 PF01546 Peptidase family M20/M25/M40 APT_RS11095 PF07687 Peptidase dimerisation domain APT_RS11100 PF01180 Dihydroorotate dehydrogenase APT_RS11105 PF07992 Pyridine nucleotide-disulphide oxidoreductase APT_RS11105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APT_RS11120 PF01979 Amidohydrolase family APT_RS11125 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin APT_RS11140 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APT_RS11145 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APT_RS11155 PF02556 Preprotein translocase subunit SecB APT_RS11165 PF04166 Pyridoxal phosphate biosynthetic protein PdxA APT_RS11170 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ APT_RS11180 PF03702 Anhydro-N-acetylmuramic acid kinase APT_RS11195 PF00474 Sodium:solute symporter family APT_RS11205 PF13532 2OG-Fe(II) oxygenase superfamily APT_RS11210 PF00144 Beta-lactamase APT_RS11215 PF01381 Helix-turn-helix APT_RS11220 PF00175 Oxidoreductase NAD-binding domain APT_RS11220 PF00970 Oxidoreductase FAD-binding domain APT_RS11220 PF00042 Globin APT_RS11225 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS11230 PF00005 ABC transporter APT_RS11230 PF09383 NIL domain APT_RS11235 PF03180 NLPA lipoprotein APT_RS11240 PF02913 FAD linked oxidases, C-terminal domain APT_RS11240 PF01565 FAD binding domain APT_RS11245 PF10414 Sirohaem synthase dimerisation region APT_RS11245 PF14824 Sirohaem biosynthesis protein central APT_RS11245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APT_RS11255 PF07859 alpha/beta hydrolase fold APT_RS11260 PF01047 MarR family APT_RS11265 PF01425 Amidase APT_RS11270 PF01613 Flavin reductase like domain APT_RS11275 PF00596 Class II Aldolase and Adducin N-terminal domain APT_RS11285 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS11300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) APT_RS11300 PF00355 Rieske [2Fe-2S] domain APT_RS11310 PF08028 Acyl-CoA dehydrogenase, C-terminal domain APT_RS11320 PF00171 Aldehyde dehydrogenase family APT_RS11325 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_RS11325 PF13360 PQQ-like domain APT_RS11330 PF07690 Major Facilitator Superfamily APT_RS11345 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS11350 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS11355 PF13416 Bacterial extracellular solute-binding protein APT_RS11360 PF00005 ABC transporter APT_RS11360 PF08402 TOBE domain APT_RS11365 PF00171 Aldehyde dehydrogenase family APT_RS11380 PF13640 2OG-Fe(II) oxygenase superfamily APT_RS11380 PF18331 PKHD-type hydroxylase C-terminal domain APT_RS11395 PF07715 TonB-dependent Receptor Plug Domain APT_RS11395 PF00593 TonB dependent receptor APT_RS11400 PF01618 MotA/TolQ/ExbB proton channel family APT_RS11405 PF02472 Biopolymer transport protein ExbD/TolR APT_RS11420 PF00355 Rieske [2Fe-2S] domain APT_RS11425 PF00375 Sodium:dicarboxylate symporter family APT_RS11445 PF05199 GMC oxidoreductase APT_RS11445 PF00732 GMC oxidoreductase APT_RS11450 PF00034 Cytochrome c APT_RS11450 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_RS11455 PF00171 Aldehyde dehydrogenase family APT_RS11460 PF07690 Major Facilitator Superfamily APT_RS11465 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase APT_RS11470 PF02277 Phosphoribosyltransferase APT_RS11475 PF02654 Cobalamin-5-phosphate synthase APT_RS11480 PF00155 Aminotransferase class I and II APT_RS11485 PF03186 CobD/Cbib protein APT_RS11490 PF00881 Nitroreductase family APT_RS11495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT_RS11495 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT_RS11500 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP APT_RS11500 PF12557 Cob(I)alamin adenosyltransferase N terminal APT_RS11510 PF07685 CobB/CobQ-like glutamine amidotransferase domain APT_RS11510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain APT_RS11515 PF02514 CobN/Magnesium Chelatase APT_RS11520 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_RS11520 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_RS11535 PF04632 Fusaric acid resistance protein family APT_RS11540 PF01184 GPR1/FUN34/yaaH family APT_RS11545 PF00378 Enoyl-CoA hydratase/isomerase APT_RS11550 PF01613 Flavin reductase like domain APT_RS11555 PF00950 ABC 3 transport family APT_RS11560 PF00005 ABC transporter APT_RS11570 PF01475 Ferric uptake regulator family APT_RS11585 PF01008 Initiation factor 2 subunit family APT_RS11600 PF00291 Pyridoxal-phosphate dependent enzyme APT_RS11605 PF00958 GMP synthase C terminal domain APT_RS11605 PF02540 NAD synthase APT_RS11605 PF00117 Glutamine amidotransferase class-I APT_RS11620 PF00083 Sugar (and other) transporter APT_RS11625 PF10145 Phage-related minor tail protein APT_RS11625 PF01551 Peptidase family M23 APT_RS11625 PF01464 Transglycosylase SLT domain APT_RS11630 PF02652 L-lactate permease APT_RS11640 PF01370 NAD dependent epimerase/dehydratase family APT_RS11645 PF01790 Prolipoprotein diacylglyceryl transferase APT_RS11655 PF02578 Multi-copper polyphenol oxidoreductase laccase APT_RS11680 PF00005 ABC transporter APT_RS11685 PF02694 Uncharacterised BCR, YnfA/UPF0060 family APT_RS11700 PF00155 Aminotransferase class I and II APT_RS11710 PF02780 Transketolase, C-terminal domain APT_RS11710 PF00456 Transketolase, thiamine diphosphate binding domain APT_RS11710 PF02779 Transketolase, pyrimidine binding domain APT_RS11715 PF00923 Transaldolase/Fructose-6-phosphate aldolase APT_RS11720 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APT_RS11720 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APT_RS11730 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APT_RS11735 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APT_RS11760 PF00654 Voltage gated chloride channel APT_RS11765 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS11765 PF00107 Zinc-binding dehydrogenase APT_RS11770 PF01168 Alanine racemase, N-terminal domain APT_RS11775 PF02705 K+ potassium transporter APT_RS11780 PF06969 HemN C-terminal domain APT_RS11780 PF04055 Radical SAM superfamily APT_RS11800 PF00005 ABC transporter APT_RS11805 PF00005 ABC transporter APT_RS11805 PF12399 Branched-chain amino acid ATP-binding cassette transporter APT_RS11815 PF02653 Branched-chain amino acid transport system / permease component APT_RS11825 PF01627 Hpt domain APT_RS11825 PF00512 His Kinase A (phospho-acceptor) domain APT_RS11825 PF00497 Bacterial extracellular solute-binding proteins, family 3 APT_RS11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APT_RS11825 PF00072 Response regulator receiver domain APT_RS11830 PF00072 Response regulator receiver domain APT_RS11830 PF00486 Transcriptional regulatory protein, C terminal APT_RS11845 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_RS11850 PF01730 UreF APT_RS11855 PF05194 UreE urease accessory protein, C-terminal domain APT_RS11855 PF02814 UreE urease accessory protein, N-terminal domain APT_RS11860 PF00449 Urease alpha-subunit, N-terminal domain APT_RS11860 PF01979 Amidohydrolase family APT_RS11865 PF00699 Urease beta subunit APT_RS11870 PF00547 Urease, gamma subunit APT_RS11875 PF01774 UreD urease accessory protein APT_RS11880 PF03824 High-affinity nickel-transport protein APT_RS11885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APT_RS11885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APT_RS11885 PF00205 Thiamine pyrophosphate enzyme, central domain APT_RS11905 PF00210 Ferritin-like domain APT_RS11910 PF03960 ArsC family APT_RS11920 PF03352 Methyladenine glycosylase APT_RS11930 PF10417 C-terminal domain of 1-Cys peroxiredoxin APT_RS11930 PF00578 AhpC/TSA family APT_RS11935 PF00753 Metallo-beta-lactamase superfamily APT_RS11940 PF01925 Sulfite exporter TauE/SafE APT_RS11950 PF03960 ArsC family APT_RS11960 PF02321 Outer membrane efflux protein APT_RS11965 PF13533 Biotin-lipoyl like APT_RS11975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS11975 PF03466 LysR substrate binding domain APT_RS11985 PF07690 Major Facilitator Superfamily APT_RS11990 PF17645 Arylmalonate decarboxylase APT_RS11995 PF00561 alpha/beta hydrolase fold APT_RS12000 PF00857 Isochorismatase family APT_RS12010 PF00034 Cytochrome c APT_RS12010 PF13442 Cytochrome C oxidase, cbb3-type, subunit III APT_RS12010 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APT_RS12015 PF01799 [2Fe-2S] binding domain APT_RS12015 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS12020 PF01494 FAD binding domain APT_RS12025 PF12802 MarR family APT_RS12060 PF01370 NAD dependent epimerase/dehydratase family APT_RS12070 PF00753 Metallo-beta-lactamase superfamily APT_RS12080 PF13478 XdhC Rossmann domain APT_RS12080 PF02625 XdhC and CoxI family APT_RS12100 PF02347 Glycine cleavage system P-protein APT_RS12105 PF01597 Glycine cleavage H-protein APT_RS12110 PF08669 Glycine cleavage T-protein C-terminal barrel domain APT_RS12110 PF01571 Aminomethyltransferase folate-binding domain APT_RS12115 PF17284 Spermidine synthase tetramerisation domain APT_RS12120 PF02675 S-adenosylmethionine decarboxylase APT_RS12130 PF03466 LysR substrate binding domain APT_RS12130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS12140 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APT_RS12145 PF01467 Cytidylyltransferase-like APT_RS12150 PF00521 DNA gyrase/topoisomerase IV, subunit A APT_RS12150 PF03989 DNA gyrase C-terminal domain, beta-propeller APT_RS12165 PF00575 S1 RNA binding domain APT_RS12165 PF03725 3' exoribonuclease family, domain 2 APT_RS12165 PF00013 KH domain APT_RS12165 PF01138 3' exoribonuclease family, domain 1 APT_RS12165 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APT_RS12170 PF00312 Ribosomal protein S15 APT_RS12175 PF01509 TruB family pseudouridylate synthase (N terminal domain) APT_RS12175 PF16198 tRNA pseudouridylate synthase B C-terminal domain APT_RS12180 PF02405 Permease MlaE APT_RS12185 PF00005 ABC transporter APT_RS12190 PF02470 MlaD protein APT_RS12225 PF00664 ABC transporter transmembrane region APT_RS12225 PF00005 ABC transporter APT_RS12225 PF03412 Peptidase C39 family APT_RS12235 PF02310 B12 binding domain APT_RS12235 PF02574 Homocysteine S-methyltransferase APT_RS12235 PF00809 Pterin binding enzyme APT_RS12235 PF02965 Vitamin B12 dependent methionine synthase, activation domain APT_RS12235 PF02607 B12 binding domain APT_RS12250 PF13537 Glutamine amidotransferase domain APT_RS12250 PF00156 Phosphoribosyl transferase domain APT_RS12260 PF02470 MlaD protein APT_RS12265 PF04403 Paraquat-inducible protein A APT_RS12275 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase APT_RS12280 PF00535 Glycosyl transferase family 2 APT_RS12285 PF00430 ATP synthase B/B' CF(0) APT_RS12290 PF00430 ATP synthase B/B' CF(0) APT_RS12295 PF00137 ATP synthase subunit C APT_RS12300 PF00119 ATP synthase A chain APT_RS12305 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter APT_RS12310 PF02881 SRP54-type protein, helical bundle domain APT_RS12310 PF00448 SRP54-type protein, GTPase domain APT_RS12315 PF00919 Uncharacterized protein family UPF0004 APT_RS12315 PF04055 Radical SAM superfamily APT_RS12320 PF01678 Diaminopimelate epimerase APT_RS12325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT_RS12335 PF00271 Helicase conserved C-terminal domain APT_RS12335 PF00270 DEAD/DEAH box helicase APT_RS12335 PF03880 DbpA RNA binding domain APT_RS12350 PF00380 Ribosomal protein S9/S16 APT_RS12355 PF00572 Ribosomal protein L13 APT_RS12370 PF01895 PhoU domain APT_RS12375 PF00005 ABC transporter APT_RS12380 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS12385 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS12390 PF00920 Dehydratase family APT_RS12400 PF00107 Zinc-binding dehydrogenase APT_RS12400 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS12410 PF13180 PDZ domain APT_RS12425 PF10609 NUBPL iron-transfer P-loop NTPase APT_RS12440 PF02511 Thymidylate synthase complementing protein APT_RS12455 PF05681 Fumarate hydratase (Fumerase) APT_RS12455 PF05683 Fumarase C-terminus APT_RS12460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APT_RS12470 PF01266 FAD dependent oxidoreductase APT_RS12475 PF01168 Alanine racemase, N-terminal domain APT_RS12475 PF00842 Alanine racemase, C-terminal domain APT_RS12480 PF01037 Lrp/AsnC ligand binding domain APT_RS12485 PF02033 Ribosome-binding factor A APT_RS12490 PF04760 Translation initiation factor IF-2, N-terminal region APT_RS12490 PF08364 Bacterial translation initiation factor IF-2 associated region APT_RS12490 PF11987 Translation-initiation factor 2 APT_RS12490 PF00009 Elongation factor Tu GTP binding domain APT_RS12500 PF00575 S1 RNA binding domain APT_RS12500 PF08529 NusA N-terminal domain APT_RS12500 PF13184 NusA-like KH domain APT_RS12505 PF17384 RimP C-terminal SH3 domain APT_RS12505 PF02576 RimP N-terminal domain APT_RS12515 PF10431 C-terminal, D2-small domain, of ClpB protein APT_RS12515 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS12515 PF07724 AAA domain (Cdc48 subfamily) APT_RS12515 PF17871 AAA lid domain APT_RS12515 PF02861 Clp amino terminal domain, pathogenicity island component APT_RS12525 PF03466 LysR substrate binding domain APT_RS12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS12530 PF00528 Binding-protein-dependent transport system inner membrane component APT_RS12535 PF00005 ABC transporter APT_RS12540 PF00330 Aconitase family (aconitate hydratase) APT_RS12540 PF00694 Aconitase C-terminal domain APT_RS12550 PF00005 ABC transporter APT_RS12555 PF03379 CcmB protein APT_RS12565 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APT_RS12565 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APT_RS12570 PF03631 Virulence factor BrkB APT_RS12575 PF05036 Sporulation related domain APT_RS12575 PF03330 Lytic transglycolase APT_RS12580 PF01220 Dehydroquinase class II APT_RS12585 PF00364 Biotin-requiring enzyme APT_RS12590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APT_RS12590 PF02785 Biotin carboxylase C-terminal domain APT_RS12590 PF00289 Biotin carboxylase, N-terminal domain APT_RS12595 PF00083 Sugar (and other) transporter APT_RS12600 PF13667 ThiC-associated domain APT_RS12600 PF01964 Radical SAM ThiC family APT_RS12615 PF03239 Iron permease FTR1 family APT_RS12620 PF10634 Fe2+ transport protein APT_RS12625 PF04966 Carbohydrate-selective porin, OprB family APT_RS12640 PF04966 Carbohydrate-selective porin, OprB family APT_RS12650 PF00202 Aminotransferase class-III APT_RS12660 PF03652 Holliday junction resolvase APT_RS12665 PF02686 Glu-tRNAGln amidotransferase C subunit APT_RS12670 PF01425 Amidase APT_RS12675 PF02637 GatB domain APT_RS12675 PF02934 GatB/GatE catalytic domain APT_RS12685 PF00664 ABC transporter transmembrane region APT_RS12685 PF00005 ABC transporter APT_RS12690 PF10576 Iron-sulfur binding domain of endonuclease III APT_RS12690 PF00730 HhH-GPD superfamily base excision DNA repair protein APT_RS12690 PF00633 Helix-hairpin-helix motif APT_RS12695 PF00762 Ferrochelatase APT_RS12700 PF00730 HhH-GPD superfamily base excision DNA repair protein APT_RS12700 PF14815 NUDIX domain APT_RS12720 PF12100 Domain of unknown function (DUF3576) APT_RS12725 PF08264 Anticodon-binding domain of tRNA APT_RS12725 PF00133 tRNA synthetases class I (I, L, M and V) APT_RS12725 PF13603 Leucyl-tRNA synthetase, Domain 2 APT_RS12770 PF02321 Outer membrane efflux protein APT_RS12780 PF00766 Electron transfer flavoprotein FAD-binding domain APT_RS12780 PF01012 Electron transfer flavoprotein domain APT_RS12785 PF01012 Electron transfer flavoprotein domain APT_RS12800 PF04055 Radical SAM superfamily APT_RS12810 PF00027 Cyclic nucleotide-binding domain APT_RS12810 PF13545 Crp-like helix-turn-helix domain APT_RS12815 PF13180 PDZ domain APT_RS12820 PF14437 MafB19-like deaminase APT_RS12825 PF07722 Peptidase C26 APT_RS12830 PF00849 RNA pseudouridylate synthase APT_RS12830 PF01479 S4 domain APT_RS12840 PF00436 Single-strand binding protein family APT_RS12850 PF01258 Prokaryotic dksA/traR C4-type zinc finger APT_RS12870 PF00239 Resolvase, N terminal domain APT_RS12870 PF02796 Helix-turn-helix domain of resolvase APT_RS12880 PF00534 Glycosyl transferases group 1 APT_RS12880 PF13439 Glycosyltransferase Family 4 APT_RS12890 PF00579 tRNA synthetases class I (W and Y) APT_RS12895 PF01523 Putative modulator of DNA gyrase APT_RS12900 PF00300 Histidine phosphatase superfamily (branch 1) APT_RS12910 PF16363 GDP-mannose 4,6 dehydratase APT_RS12915 PF00483 Nucleotidyl transferase APT_RS12920 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APT_RS12925 PF04321 RmlD substrate binding domain APT_RS12930 PF00535 Glycosyl transferase family 2 APT_RS12935 PF01580 FtsK/SpoIIIE family APT_RS12935 PF09397 Ftsk gamma domain APT_RS12935 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APT_RS12935 PF17854 FtsK alpha domain APT_RS12940 PF00849 RNA pseudouridylate synthase APT_RS12940 PF01479 S4 domain APT_RS12945 PF13439 Glycosyltransferase Family 4 APT_RS12960 PF00111 2Fe-2S iron-sulfur cluster binding domain APT_RS12965 PF00266 Aminotransferase class-V APT_RS12970 PF00266 Aminotransferase class-V APT_RS12975 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APT_RS12985 PF09190 DALR domain APT_RS12985 PF01406 tRNA synthetases class I (C) catalytic domain APT_RS12995 PF02875 Mur ligase family, glutamate ligase domain APT_RS12995 PF08245 Mur ligase middle domain APT_RS13000 PF17848 Acetyl-coA carboxylase zinc finger domain APT_RS13000 PF01039 Carboxyl transferase domain APT_RS13005 PF00085 Thioredoxin APT_RS13010 PF00580 UvrD/REP helicase N-terminal domain APT_RS13010 PF12705 PD-(D/E)XK nuclease superfamily APT_RS13010 PF13361 UvrD-like helicase C-terminal domain APT_RS13015 PF12705 PD-(D/E)XK nuclease superfamily APT_RS13020 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APT_RS13025 PF00072 Response regulator receiver domain APT_RS13025 PF00486 Transcriptional regulatory protein, C terminal APT_RS13030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APT_RS13030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APT_RS13030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APT_RS13030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APT_RS13035 PF00809 Pterin binding enzyme APT_RS13040 PF00004 ATPase family associated with various cellular activities (AAA) APT_RS13040 PF06480 FtsH Extracellular APT_RS13040 PF17862 AAA+ lid domain APT_RS13040 PF01434 Peptidase family M41 APT_RS13045 PF01171 PP-loop family APT_RS13055 PF00691 OmpA family APT_RS13060 PF07676 WD40-like Beta Propeller Repeat APT_RS13060 PF04052 TolB amino-terminal domain APT_RS13070 PF02472 Biopolymer transport protein ExbD/TolR APT_RS13075 PF01618 MotA/TolQ/ExbB proton channel family APT_RS13080 PF03061 Thioesterase superfamily APT_RS13085 PF17864 RuvB AAA lid domain APT_RS13085 PF05491 RuvB C-terminal winged helix domain APT_RS13085 PF05496 Holliday junction DNA helicase RuvB P-loop domain APT_RS13090 PF07499 RuvA, C-terminal domain APT_RS13090 PF01330 RuvA N terminal domain APT_RS13095 PF02075 Crossover junction endodeoxyribonuclease RuvC APT_RS13100 PF01709 Transcriptional regulator APT_RS13105 PF07516 SecA Wing and Scaffold domain APT_RS13105 PF07517 SecA DEAD-like domain APT_RS13105 PF01043 SecA preprotein cross-linking domain APT_RS13105 PF02810 SEC-C motif APT_RS13115 PF01960 ArgJ family APT_RS13125 PF00924 Mechanosensitive ion channel APT_RS13140 PF00226 DnaJ domain APT_RS13140 PF01556 DnaJ C terminal domain APT_RS13140 PF00684 DnaJ central domain APT_RS13155 PF03807 NADP oxidoreductase coenzyme F420-dependent APT_RS13155 PF14748 Pyrroline-5-carboxylate reductase dimerisation APT_RS13175 PF00216 Bacterial DNA-binding protein APT_RS13195 PF00535 Glycosyl transferase family 2 APT_RS13205 PF00795 Carbon-nitrogen hydrolase APT_RS13205 PF02540 NAD synthase APT_RS13210 PF00475 Imidazoleglycerol-phosphate dehydratase APT_RS13215 PF00117 Glutamine amidotransferase class-I APT_RS13220 PF00977 Histidine biosynthesis protein APT_RS13225 PF00977 Histidine biosynthesis protein APT_RS13230 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APT_RS13235 PF01230 HIT domain APT_RS13240 PF00881 Nitroreductase family APT_RS13245 PF01494 FAD binding domain APT_RS13250 PF13811 Domain of unknown function (DUF4186) APT_RS13270 PF02195 ParB-like nuclease domain APT_RS13270 PF17762 HTH domain found in ParB protein APT_RS13275 PF13614 AAA domain APT_RS13280 PF02527 rRNA small subunit methyltransferase G APT_RS13285 PF13932 GidA associated domain APT_RS13285 PF01134 Glucose inhibited division protein A APT_RS13290 PF12631 MnmE helical domain APT_RS13290 PF01926 50S ribosome-binding GTPase APT_RS13290 PF10396 GTP-binding protein TrmE N-terminus APT_RS13295 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT_RS13295 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT_RS13320 PF03641 Possible lysine decarboxylase APT_RS13325 PF07690 Major Facilitator Superfamily APT_RS13335 PF03653 Uncharacterised protein family (UPF0093) APT_RS13340 PF13419 Haloacid dehalogenase-like hydrolase APT_RS13345 PF01208 Uroporphyrinogen decarboxylase (URO-D) APT_RS13350 PF02545 Maf-like protein APT_RS13375 PF02195 ParB-like nuclease domain APT_RS13375 PF17762 HTH domain found in ParB protein APT_RS13400 PF01609 Transposase DDE domain APT_RS13405 PF05443 ROS/MUCR transcriptional regulator protein APT_RS13450 PF01850 PIN domain APT_RS13495 PF00216 Bacterial DNA-binding protein APT_RS13500 PF00239 Resolvase, N terminal domain APT_RS13500 PF02796 Helix-turn-helix domain of resolvase APT_RS13530 PF01810 LysE type translocator APT_RS13545 PF05443 ROS/MUCR transcriptional regulator protein APT_RS13560 PF02796 Helix-turn-helix domain of resolvase APT_RS13560 PF00239 Resolvase, N terminal domain APT_RS13590 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system APT_RS13630 PF00291 Pyridoxal-phosphate dependent enzyme APT_RS13645 PF00665 Integrase core domain APT_RS13645 PF13333 Integrase core domain APT_RS13645 PF13276 HTH-like domain APT_RS13650 PF00665 Integrase core domain APT_RS13650 PF13333 Integrase core domain APT_RS13650 PF13276 HTH-like domain APT_RS13670 PF00005 ABC transporter APT_RS13670 PF06472 ABC transporter transmembrane region 2 APT_RS13675 PF03129 Anticodon binding domain APT_RS13675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APT_RS13675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APT_RS13675 PF02824 TGS domain APT_RS13685 PF01227 GTP cyclohydrolase I APT_RS13690 PF01502 Phosphoribosyl-AMP cyclohydrolase APT_RS13695 PF07683 Cobalamin synthesis protein cobW C-terminal domain APT_RS13695 PF02492 CobW/HypB/UreG, nucleotide-binding domain APT_RS13700 PF00107 Zinc-binding dehydrogenase APT_RS13700 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS13705 PF03428 Replication protein C N-terminal domain APT_RS13705 PF11800 Replication protein C C-terminal region APT_RS13715 PF02661 Fic/DOC family APT_RS13765 PF02082 Transcriptional regulator APT_RS13775 PF00239 Resolvase, N terminal domain APT_RS13780 PF03352 Methyladenine glycosylase APT_RS13785 PF13532 2OG-Fe(II) oxygenase superfamily APT_RS13790 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA APT_RS13800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APT_RS13800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APT_RS13800 PF02805 Metal binding domain of Ada APT_RS13800 PF12833 Helix-turn-helix domain APT_RS13815 PF03466 LysR substrate binding domain APT_RS13815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS13820 PF00248 Aldo/keto reductase family APT_RS13825 PF00248 Aldo/keto reductase family APT_RS13830 PF02583 Metal-sensitive transcriptional repressor APT_RS13835 PF08240 Alcohol dehydrogenase GroES-like domain APT_RS13835 PF00107 Zinc-binding dehydrogenase APT_RS13845 PF00756 Putative esterase APT_RS13880 PF13333 Integrase core domain APT_RS13880 PF13276 HTH-like domain APT_RS13880 PF00665 Integrase core domain APT_RS13890 PF13340 Putative transposase of IS4/5 family (DUF4096) APT_RS13900 PF02082 Transcriptional regulator APT_RS13910 PF01965 DJ-1/PfpI family APT_RS13910 PF12833 Helix-turn-helix domain APT_RS13915 PF00106 short chain dehydrogenase APT_RS13920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS13920 PF03466 LysR substrate binding domain APT_RS13930 PF00753 Metallo-beta-lactamase superfamily APT_RS13945 PF01527 Transposase APT_RS13950 PF04986 Putative transposase APT_RS13950 PF14319 Transposase zinc-binding domain APT_RS13955 PF03466 LysR substrate binding domain APT_RS13955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS13960 PF01717 Cobalamin-independent synthase, Catalytic domain APT_RS13960 PF08267 Cobalamin-independent synthase, N-terminal domain APT_RS13980 PF13737 Transposase DDE domain APT_RS13990 PF01609 Transposase DDE domain APT_RS14005 PF00239 Resolvase, N terminal domain APT_RS14005 PF02796 Helix-turn-helix domain of resolvase APT_RS14010 PF05443 ROS/MUCR transcriptional regulator protein APT_RS14030 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system APT_RS14040 PF01037 Lrp/AsnC ligand binding domain APT_RS14045 PF01810 LysE type translocator APT_RS14050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS14050 PF03466 LysR substrate binding domain APT_RS14055 PF03547 Membrane transport protein APT_RS14060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS14060 PF03466 LysR substrate binding domain APT_RS14070 PF16177 Acetyl-coenzyme A synthetase N-terminus APT_RS14070 PF13193 AMP-binding enzyme C-terminal domain APT_RS14070 PF00501 AMP-binding enzyme APT_RS14085 PF00534 Glycosyl transferases group 1 APT_RS14085 PF13439 Glycosyltransferase Family 4 APT_RS14090 PF02769 AIR synthase related protein, C-terminal domain APT_RS14090 PF00586 AIR synthase related protein, N-terminal domain APT_RS14105 PF00795 Carbon-nitrogen hydrolase APT_RS14115 PF00155 Aminotransferase class I and II APT_RS14115 PF00392 Bacterial regulatory proteins, gntR family APT_RS14125 PF03466 LysR substrate binding domain APT_RS14125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APT_RS14130 PF07690 Major Facilitator Superfamily APT_RS14140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APT_RS14145 PF00106 short chain dehydrogenase APT_RS14150 PF12833 Helix-turn-helix domain APT_RS14150 PF02311 AraC-like ligand binding domain APT_RS14155 PF00149 Calcineurin-like phosphoesterase APT_RS14155 PF10518 TAT (twin-arginine translocation) pathway signal sequence APT_RS14160 PF00106 short chain dehydrogenase APT_RS14180 PF00561 alpha/beta hydrolase fold APT_RS14210 PF01609 Transposase DDE domain APT_RS14215 PF00580 UvrD/REP helicase N-terminal domain APT_RS14215 PF13361 UvrD-like helicase C-terminal domain APT_RS14230 PF07733 Bacterial DNA polymerase III alpha NTPase domain APT_RS14230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APT_RS14230 PF14579 Helix-hairpin-helix motif APT_RS14230 PF01336 OB-fold nucleic acid binding domain APT_RS14230 PF02811 PHP domain APT_RS14235 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_RS14235 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_RS14240 PF00109 Beta-ketoacyl synthase, N-terminal domain APT_RS14240 PF02801 Beta-ketoacyl synthase, C-terminal domain APT_RS14245 PF00011 Hsp20/alpha crystallin family APT_RS14260 PF02899 Phage integrase, N-terminal SAM-like domain APT_RS14260 PF00589 Phage integrase family APT_RS14275 PF01527 Transposase APT_RS14280 PF13333 Integrase core domain APT_RS14280 PF13276 HTH-like domain APT_RS14280 PF00665 Integrase core domain APT_RS14285 PF00239 Resolvase, N terminal domain APT_RS14285 PF02796 Helix-turn-helix domain of resolvase APT_RS14320 PF03389 MobA/MobL family