A4S02_RS00040	SM00849	Metallo-beta-lactamase superfamily
A4S02_RS00050	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4S02_RS00120	SM00988	UreE urease accessory protein, N-terminal domain
A4S02_RS00145	SM00421	helix_turn_helix, Lux Regulon
A4S02_RS00145	SM00448	cheY-homologous receiver domain
A4S02_RS00150	SM00448	cheY-homologous receiver domain
A4S02_RS00165	SM00387	Histidine kinase-like ATPases
A4S02_RS00165	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS00185	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS00190	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS00220	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS00235	SM00829	Enoylreductase
A4S02_RS00280	SM01350	A4S02_RS00280
A4S02_RS00290	SM00861	Transketolase, pyrimidine binding domain
A4S02_RS00295	SM00248	ankyrin repeats
A4S02_RS00320	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS00440	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS00450	SM00903	Flavin reductase like domain
A4S02_RS00480	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4S02_RS00490	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A4S02_RS00505	SM00855	Phosphoglycerate mutase family
A4S02_RS00645	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS00685	SM00450	Rhodanese Homology Domain
A4S02_RS00850	SM00822	A4S02_RS00850
A4S02_RS00980	SM00320	WD40 repeats
A4S02_RS00985	SM00833	Cobalamin synthesis protein cobW C-terminal domain
A4S02_RS01120	SM01329	A4S02_RS01120
A4S02_RS01140	SM00938	Nitrogen regulatory protein P-II
A4S02_RS01145	SM01230	A4S02_RS01145
A4S02_RS01170	SM00564	beta-propeller repeat
A4S02_RS01180	SM00564	beta-propeller repeat
A4S02_RS01195	SM00838	Elongation factor G C-terminus
A4S02_RS01210	SM00487	DEAD-like helicases superfamily
A4S02_RS01210	SM00490	helicase superfamily c-terminal domain
A4S02_RS01220	SM00947	Carbonic anhydrase
A4S02_RS01235	SM01409	A4S02_RS01235
A4S02_RS01240	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4S02_RS01240	SM00954	Region found in RelA / SpoT proteins
A4S02_RS01255	SM00358	Double-stranded RNA binding motif
A4S02_RS01255	SM00535	Ribonuclease III family
A4S02_RS01290	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4S02_RS01300	SM00935	Outer membrane protein (OmpH-like)
A4S02_RS01415	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS01430	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4S02_RS01435	SM00474	3'-5' exonuclease
A4S02_RS01440	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A4S02_RS01455	SM00072	Guanylate kinase homologues.
A4S02_RS01505	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS01520	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS01535	SM00857	Resolvase, N terminal domain
A4S02_RS01570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4S02_RS01570	SM00895	A4S02_RS01570
A4S02_RS01665	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4S02_RS01670	SM00487	DEAD-like helicases superfamily
A4S02_RS01670	SM00490	helicase superfamily c-terminal domain
A4S02_RS01670	SM00847	Helicase associated domain (HA2)  Add an annotation
A4S02_RS01715	SM01007	Class II Aldolase and Adducin N-terminal domain
A4S02_RS01730	SM00904	Riboflavin kinase
A4S02_RS01750	SM00853	MutL C terminal dimerisation domain
A4S02_RS01750	SM01340	A4S02_RS01750
A4S02_RS01765	SM00387	Histidine kinase-like ATPases
A4S02_RS01765	SM00433	TopoisomeraseII
A4S02_RS01800	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4S02_RS01800	SM00245	tail specific protease
A4S02_RS01805	SM00955	A4S02_RS01805
A4S02_RS01810	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A4S02_RS01810	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A4S02_RS01810	SM00493	A4S02_RS01810
A4S02_RS01820	SM01207	A4S02_RS01820
A4S02_RS01870	SM00861	Transketolase, pyrimidine binding domain
A4S02_RS01895	SM00996	S-adenosyl-L-homocysteine hydrolase
A4S02_RS01895	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A4S02_RS01900	SM00563	Phosphate acyltransferases
A4S02_RS01910	SM00849	Metallo-beta-lactamase superfamily
A4S02_RS01960	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4S02_RS01995	SM00852	Probable molybdopterin binding domain
A4S02_RS02045	SM00978	A4S02_RS02045
A4S02_RS02055	SM01235	A4S02_RS02055
A4S02_RS02060	SM00463	Small MutS-related domain
A4S02_RS02240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A4S02_RS02245	SM00829	Enoylreductase
A4S02_RS02295	SM00479	A4S02_RS02295
A4S02_RS02350	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A4S02_RS02525	SM00448	cheY-homologous receiver domain
A4S02_RS02525	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS02530	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4S02_RS02530	SM00387	Histidine kinase-like ATPases
A4S02_RS02530	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS02550	SM00649	Ribosomal protein L11/L12
A4S02_RS02575	SM00663	RNA polymerase I subunit A N-terminus
A4S02_RS02595	SM01403	A4S02_RS02595
A4S02_RS02615	SM01382	A4S02_RS02615
A4S02_RS02615	SM01383	A4S02_RS02615
A4S02_RS02630	SM00322	K homology RNA-binding domain
A4S02_RS02650	SM01374	A4S02_RS02650
A4S02_RS02655	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A4S02_RS02720	SM00662	RNA polymerases D
A4S02_RS02740	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS02820	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS02835	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS02860	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4S02_RS02860	SM00245	tail specific protease
A4S02_RS02890	SM00851	MGS-like domain
A4S02_RS02890	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A4S02_RS02895	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A4S02_RS02905	SM00400	zinc finger
A4S02_RS02905	SM00493	A4S02_RS02905
A4S02_RS02940	SM00650	Ribosomal RNA adenine dimethylases
A4S02_RS02970	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS02975	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A4S02_RS02975	SM00895	A4S02_RS02975
A4S02_RS03015	SM00028	Tetratricopeptide repeats
A4S02_RS03020	SM01058	CarD-like/TRCF domain
A4S02_RS03045	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS03060	SM00387	Histidine kinase-like ATPases
A4S02_RS03060	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS03065	SM00091	PAS domain
A4S02_RS03065	SM00387	Histidine kinase-like ATPases
A4S02_RS03065	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS03065	SM00448	cheY-homologous receiver domain
A4S02_RS03075	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS03075	SM01086	C-terminal, D2-small domain, of ClpB protein
A4S02_RS03085	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A4S02_RS03120	SM00873	B3/4 domain
A4S02_RS03120	SM00874	tRNA synthetase B5 domain
A4S02_RS03120	SM00896	Ferredoxin-fold anticodon binding domain
A4S02_RS03145	SM00100	Cyclic nucleotide-monophosphate binding domain
A4S02_RS03155	SM00363	S4 RNA-binding domain
A4S02_RS03155	SM01390	A4S02_RS03155
A4S02_RS03170	SM01329	A4S02_RS03170
A4S02_RS03205	SM01001	AIR carboxylase
A4S02_RS03300	SM00855	Phosphoglycerate mutase family
A4S02_RS03305	SM00830	Chorismate mutase type II
A4S02_RS03325	SM00968	SMC proteins Flexible Hinge Domain
A4S02_RS03335	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4S02_RS03335	SM01091	Transporter associated domain
A4S02_RS03350	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS03355	SM00563	Phosphate acyltransferases
A4S02_RS03380	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4S02_RS03380	SM00465	GIY-YIG type nucleases (URI domain)
A4S02_RS03430	SM00852	Probable molybdopterin binding domain
A4S02_RS03445	SM01192	A4S02_RS03445
A4S02_RS03445	SM01193	A4S02_RS03445
A4S02_RS03475	SM00487	DEAD-like helicases superfamily
A4S02_RS03475	SM00490	helicase superfamily c-terminal domain
A4S02_RS03485	SM00487	DEAD-like helicases superfamily
A4S02_RS03485	SM00490	helicase superfamily c-terminal domain
A4S02_RS03485	SM00982	A4S02_RS03485
A4S02_RS03485	SM01058	CarD-like/TRCF domain
A4S02_RS03505	SM00327	von Willebrand factor (vWF) type A domain
A4S02_RS03515	SM00271	DnaJ molecular chaperone homology domain
A4S02_RS03550	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS03600	SM00530	Helix-turn-helix XRE-family like proteins 
A4S02_RS03615	SM00937	A4S02_RS03615
A4S02_RS03675	SM00936	Penicillin-binding protein 5, C-terminal domain 
A4S02_RS03700	SM00849	Metallo-beta-lactamase superfamily
A4S02_RS03750	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS03750	SM00876	Biotin and Thiamin Synthesis associated domain
A4S02_RS03820	SM00825	Beta-ketoacyl synthase
A4S02_RS03830	SM00822	A4S02_RS03830
A4S02_RS03835	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A4S02_RS03865	SM00357	Cold shock protein domain
A4S02_RS03875	SM01130	A4S02_RS03875
A4S02_RS03940	SM00450	Rhodanese Homology Domain
A4S02_RS03955	SM00155	Phospholipase D. Active site motifs.
A4S02_RS03985	SM01211	A4S02_RS03985
A4S02_RS04005	SM00998	Adenylosuccinate lyase C-terminus
A4S02_RS04040	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS04055	SM00861	Transketolase, pyrimidine binding domain
A4S02_RS04115	SM00387	Histidine kinase-like ATPases
A4S02_RS04115	SM00433	TopoisomeraseII
A4S02_RS04125	SM00480	DNA polymerase III beta subunit
A4S02_RS04130	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04130	SM00760	Bacterial dnaA protein helix-turn-helix domain
A4S02_RS04140	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A4S02_RS04140	SM01232	A4S02_RS04140
A4S02_RS04165	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04220	SM00822	A4S02_RS04220
A4S02_RS04265	SM00420	helix_turn_helix, Deoxyribose operon repressor
A4S02_RS04265	SM01134	A4S02_RS04265
A4S02_RS04270	SM00341	Helicase and RNase D C-terminal
A4S02_RS04270	SM00487	DEAD-like helicases superfamily
A4S02_RS04270	SM00490	helicase superfamily c-terminal domain
A4S02_RS04270	SM00956	A4S02_RS04270
A4S02_RS04280	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04285	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04290	SM00387	Histidine kinase-like ATPases
A4S02_RS04310	SM00448	cheY-homologous receiver domain
A4S02_RS04315	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04325	SM00829	Enoylreductase
A4S02_RS04385	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04455	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A4S02_RS04460	SM01092	CO dehydrogenase flavoprotein C-terminal domain
A4S02_RS04550	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04605	SM01060	A4S02_RS04605
A4S02_RS04690	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04755	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04790	SM00796	Allophanate hydrolase subunit 1
A4S02_RS04790	SM00797	Allophanate hydrolase subunit 2
A4S02_RS04790	SM00878	Biotin carboxylase C-terminal domain
A4S02_RS04965	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS04995	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4S02_RS04995	SM00529	Helix-turn-helix diphteria tox regulatory element
A4S02_RS05165	SM00746	metallochaperone-like domain
A4S02_RS05180	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4S02_RS05180	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS05185	SM00857	Resolvase, N terminal domain
A4S02_RS05355	SM00564	beta-propeller repeat
A4S02_RS05465	SM00890	Domain of unknown function
A4S02_RS05525	SM00852	Probable molybdopterin binding domain
A4S02_RS05585	SM00861	Transketolase, pyrimidine binding domain
A4S02_RS05590	SM00363	S4 RNA-binding domain
A4S02_RS05635	SM00448	cheY-homologous receiver domain
A4S02_RS05635	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS05655	SM00116	Domain in cystathionine beta-synthase and other proteins.
A4S02_RS05655	SM01240	A4S02_RS05655
A4S02_RS05675	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS05680	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS05690	SM00014	Acid phosphatase homologues
A4S02_RS05780	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS05845	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS05895	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06160	SM00062	Bacterial periplasmic substrate-binding proteins
A4S02_RS06165	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06185	SM01007	Class II Aldolase and Adducin N-terminal domain
A4S02_RS06310	SM00346	helix_turn_helix isocitrate lyase regulation
A4S02_RS06320	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06335	SM00849	Metallo-beta-lactamase superfamily
A4S02_RS06405	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A4S02_RS06440	SM00411	bacterial (prokaryotic) histone like domain
A4S02_RS06445	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06445	SM00464	Found in ATP-dependent protease La (LON)
A4S02_RS06450	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06450	SM00994	ClpX C4-type zinc finger
A4S02_RS06450	SM01086	C-terminal, D2-small domain, of ClpB protein
A4S02_RS06480	SM00487	DEAD-like helicases superfamily
A4S02_RS06480	SM00490	helicase superfamily c-terminal domain
A4S02_RS06515	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06545	SM00838	Elongation factor G C-terminus
A4S02_RS06545	SM00889	Elongation factor G, domain IV
A4S02_RS06560	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06570	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4S02_RS06575	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A4S02_RS06575	SM00534	ATPase domain of DNA mismatch repair MUTS family
A4S02_RS06580	SM00028	Tetratricopeptide repeats
A4S02_RS06610	SM00978	A4S02_RS06610
A4S02_RS06655	SM00344	helix_turn_helix ASNC type
A4S02_RS06675	SM00411	bacterial (prokaryotic) histone like domain
A4S02_RS06710	SM00422	helix_turn_helix, mercury resistance
A4S02_RS06715	SM00411	bacterial (prokaryotic) histone like domain
A4S02_RS06745	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4S02_RS06745	SM00387	Histidine kinase-like ATPases
A4S02_RS06745	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS06750	SM00448	cheY-homologous receiver domain
A4S02_RS06750	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS06755	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4S02_RS06775	SM01329	A4S02_RS06775
A4S02_RS06810	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06810	SM00962	SRP54-type protein, GTPase domain
A4S02_RS06810	SM00963	SRP54-type protein, helical bundle domain
A4S02_RS06830	SM00363	S4 RNA-binding domain
A4S02_RS06835	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06870	SM00564	beta-propeller repeat
A4S02_RS06940	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06940	SM01086	C-terminal, D2-small domain, of ClpB protein
A4S02_RS06960	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06960	SM00448	cheY-homologous receiver domain
A4S02_RS06965	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4S02_RS06965	SM00387	Histidine kinase-like ATPases
A4S02_RS06965	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS06970	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS06970	SM00448	cheY-homologous receiver domain
A4S02_RS06975	SM00091	PAS domain
A4S02_RS06975	SM00387	Histidine kinase-like ATPases
A4S02_RS06975	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS07060	SM00984	UDP binding domain
A4S02_RS07070	SM00938	Nitrogen regulatory protein P-II
A4S02_RS07075	SM00971	Serine acetyltransferase, N-terminal
A4S02_RS07135	SM00841	Elongation factor P, C-terminal
A4S02_RS07135	SM01185	A4S02_RS07135
A4S02_RS07145	SM00491	A4S02_RS07145
A4S02_RS07150	SM00357	Cold shock protein domain
A4S02_RS07160	SM00883	Chaperonin 10 Kd subunit
A4S02_RS07265	SM00487	DEAD-like helicases superfamily
A4S02_RS07265	SM00490	helicase superfamily c-terminal domain
A4S02_RS07270	SM01323	A4S02_RS07270
A4S02_RS07285	SM01321	A4S02_RS07285
A4S02_RS07325	SM00852	Probable molybdopterin binding domain
A4S02_RS07475	SM00387	Histidine kinase-like ATPases
A4S02_RS07475	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS07480	SM00448	cheY-homologous receiver domain
A4S02_RS07480	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS07550	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A4S02_RS07655	SM00842	Cell division protein FtsA
A4S02_RS07660	SM00864	Tubulin/FtsZ family, GTPase domain
A4S02_RS07660	SM00865	Tubulin/FtsZ family, C-terminal domain
A4S02_RS07680	SM00292	breast cancer carboxy-terminal domain
A4S02_RS07680	SM00532	Ligase N family
A4S02_RS07800	SM00487	DEAD-like helicases superfamily
A4S02_RS07800	SM00490	helicase superfamily c-terminal domain
A4S02_RS07830	SM01004	Delta-aminolevulinic acid dehydratase
A4S02_RS07855	SM00434	DNA Topoisomerase IV
A4S02_RS07900	SM00481	DNA polymerase alpha chain like domain
A4S02_RS07950	SM00507	HNH nucleases
A4S02_RS07970	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS07975	SM00562	A4S02_RS07975
A4S02_RS07980	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS07990	SM00448	cheY-homologous receiver domain
A4S02_RS07990	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS07995	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A4S02_RS07995	SM00387	Histidine kinase-like ATPases
A4S02_RS08010	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A4S02_RS08020	SM00028	Tetratricopeptide repeats
A4S02_RS08100	SM00646	A4S02_RS08100
A4S02_RS08105	SM00316	Ribosomal protein S1-like RNA-binding domain
A4S02_RS08120	SM00316	Ribosomal protein S1-like RNA-binding domain
A4S02_RS08175	SM00460	Transglutaminase/protease-like homologues
A4S02_RS08320	SM00796	Allophanate hydrolase subunit 1
A4S02_RS08400	SM00344	helix_turn_helix ASNC type
A4S02_RS08440	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A4S02_RS08480	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A4S02_RS08485	SM01012	A4S02_RS08485
A4S02_RS08505	SM00448	cheY-homologous receiver domain
A4S02_RS08795	SM00836	DALR anticodon binding domain
A4S02_RS08795	SM01016	Arginyl tRNA synthetase N terminal dom
A4S02_RS08800	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A4S02_RS08905	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS08920	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A4S02_RS08920	SM00474	3'-5' exonuclease
A4S02_RS08920	SM00475	5'-3' exonuclease
A4S02_RS08920	SM00482	DNA polymerase A domain
A4S02_RS08930	SM00563	Phosphate acyltransferases
A4S02_RS08995	SM00220	Serine/Threonine protein kinases, catalytic domain
A4S02_RS09050	SM00255	Toll - interleukin 1 - resistance
A4S02_RS09115	SM00487	DEAD-like helicases superfamily
A4S02_RS09115	SM00490	helicase superfamily c-terminal domain
A4S02_RS09205	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A4S02_RS09280	SM00530	Helix-turn-helix XRE-family like proteins 
A4S02_RS09295	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS09330	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4S02_RS09340	SM00903	Flavin reductase like domain
A4S02_RS09345	SM01007	Class II Aldolase and Adducin N-terminal domain
A4S02_RS09360	SM00822	A4S02_RS09360
A4S02_RS09415	SM00564	beta-propeller repeat
A4S02_RS09490	SM00530	Helix-turn-helix XRE-family like proteins 
A4S02_RS09580	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
A4S02_RS09685	SM00530	Helix-turn-helix XRE-family like proteins 
A4S02_RS09815	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A4S02_RS10040	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS10070	SM00822	A4S02_RS10070
A4S02_RS10105	SM00855	Phosphoglycerate mutase family
A4S02_RS10110	SM01400	A4S02_RS10110
A4S02_RS10120	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS10155	SM00028	Tetratricopeptide repeats
A4S02_RS10160	SM00986	Uracil DNA glycosylase superfamily
A4S02_RS10160	SM00987	UreE urease accessory protein, C-terminal domain 
A4S02_RS10170	SM01091	Transporter associated domain
A4S02_RS10180	SM00861	Transketolase, pyrimidine binding domain
A4S02_RS10195	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS10270	SM00450	Rhodanese Homology Domain
A4S02_RS10370	SM00530	Helix-turn-helix XRE-family like proteins 
A4S02_RS10790	SM00479	A4S02_RS10790
A4S02_RS10820	SM00477	DNA/RNA non-specific endonuclease
A4S02_RS10820	SM00892	DNA/RNA non-specific endonuclease
A4S02_RS10890	SM00387	Histidine kinase-like ATPases
A4S02_RS10930	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A4S02_RS10935	SM00822	A4S02_RS10935
A4S02_RS10955	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS10970	SM01091	Transporter associated domain
A4S02_RS11005	SM00387	Histidine kinase-like ATPases
A4S02_RS11005	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS11010	SM00448	cheY-homologous receiver domain
A4S02_RS11010	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS11015	SM00788	Adenylosuccinate synthetase
A4S02_RS11025	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS11055	SM00357	Cold shock protein domain
A4S02_RS11055	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS11055	SM00959	Rho termination factor, N-terminal domain
A4S02_RS11080	SM00530	Helix-turn-helix XRE-family like proteins 
A4S02_RS11110	SM00798	AICARFT/IMPCHase bienzyme
A4S02_RS11110	SM00851	MGS-like domain
A4S02_RS11130	SM00271	DnaJ molecular chaperone homology domain
A4S02_RS11145	SM00448	cheY-homologous receiver domain
A4S02_RS11145	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS11150	SM00387	Histidine kinase-like ATPases
A4S02_RS11150	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS11180	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS11180	SM01086	C-terminal, D2-small domain, of ClpB protein
A4S02_RS11235	SM01133	A4S02_RS11235
A4S02_RS11340	SM00487	DEAD-like helicases superfamily
A4S02_RS11340	SM00490	helicase superfamily c-terminal domain
A4S02_RS11460	SM00271	DnaJ molecular chaperone homology domain
A4S02_RS11480	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS11500	SM00867	YceI-like domain 
A4S02_RS11525	SM00028	Tetratricopeptide repeats
A4S02_RS11595	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4S02_RS11655	SM00487	DEAD-like helicases superfamily
A4S02_RS11750	SM00855	Phosphoglycerate mutase family
A4S02_RS11785	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS11785	SM00843	A4S02_RS11785
A4S02_RS11835	SM00840	A4S02_RS11835
A4S02_RS11875	SM00448	cheY-homologous receiver domain
A4S02_RS11875	SM00862	Transcriptional regulatory protein, C terminal
A4S02_RS11890	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS11935	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS11940	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A4S02_RS11955	SM00957	SecA DEAD-like domain
A4S02_RS11955	SM00958	SecA preprotein cross-linking domain
A4S02_RS11990	SM00271	DnaJ molecular chaperone homology domain
A4S02_RS12025	SM00411	bacterial (prokaryotic) histone like domain
A4S02_RS12135	SM00470	ParB-like nuclease domain
A4S02_RS12150	SM01228	A4S02_RS12150
A4S02_RS12245	SM00464	Found in ATP-dependent protease La (LON)
A4S02_RS12270	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS12275	SM00932	Scaffold protein Nfu/NifU N terminal
A4S02_RS12295	SM01209	A4S02_RS12295
A4S02_RS12295	SM01210	A4S02_RS12295
A4S02_RS12325	SM00829	Enoylreductase
A4S02_RS12340	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A4S02_RS12340	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A4S02_RS12345	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A4S02_RS12385	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A4S02_RS12390	SM00861	Transketolase, pyrimidine binding domain
A4S02_RS12415	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS12460	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS12470	SM00493	A4S02_RS12470
A4S02_RS12480	SM00905	Dihydroneopterin aldolase
A4S02_RS12500	SM00316	Ribosomal protein S1-like RNA-binding domain
A4S02_RS12535	SM00937	A4S02_RS12535
A4S02_RS12590	SM00917	LeuA allosteric (dimerisation) domain
A4S02_RS12610	SM00387	Histidine kinase-like ATPases
A4S02_RS12610	SM00388	His Kinase A (phosphoacceptor) domain
A4S02_RS12610	SM00448	cheY-homologous receiver domain
A4S02_RS12630	SM00986	Uracil DNA glycosylase superfamily
A4S02_RS12630	SM00987	UreE urease accessory protein, C-terminal domain 
A4S02_RS12640	SM00564	beta-propeller repeat
A4S02_RS12680	SM00490	helicase superfamily c-terminal domain
A4S02_RS12690	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4S02_RS12735	SM00490	helicase superfamily c-terminal domain
A4S02_RS12755	SM00919	Malic enzyme, NAD binding domain
A4S02_RS12755	SM01274	A4S02_RS12755
A4S02_RS12760	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A4S02_RS12760	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A4S02_RS12800	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS12815	SM00341	Helicase and RNase D C-terminal
A4S02_RS12815	SM00474	3'-5' exonuclease
A4S02_RS12840	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS12870	SM00342	helix_turn_helix, arabinose operon control protein
A4S02_RS12920	SM00357	Cold shock protein domain
A4S02_RS12995	SM00363	S4 RNA-binding domain
A4S02_RS13010	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4S02_RS13015	SM00100	Cyclic nucleotide-monophosphate binding domain
A4S02_RS13015	SM00419	helix_turn_helix, cAMP Regulatory protein
A4S02_RS13025	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS13040	SM00893	Electron transfer flavoprotein domain
A4S02_RS13045	SM00893	Electron transfer flavoprotein domain
A4S02_RS13125	SM00478	endonuclease III
A4S02_RS13135	SM00478	endonuclease III
A4S02_RS13140	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13150	SM00845	GatB domain
A4S02_RS13165	SM00732	Likely ribonuclease with RNase H fold.
A4S02_RS13250	SM00878	Biotin carboxylase C-terminal domain
A4S02_RS13290	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13300	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13305	SM00062	Bacterial periplasmic substrate-binding proteins
A4S02_RS13305	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
A4S02_RS13320	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13335	SM00316	Ribosomal protein S1-like RNA-binding domain
A4S02_RS13335	SM00322	K homology RNA-binding domain
A4S02_RS13355	SM00344	helix_turn_helix ASNC type
A4S02_RS13360	SM01005	Alanine racemase, C-terminal domain
A4S02_RS13425	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A4S02_RS13460	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13500	SM00487	DEAD-like helicases superfamily
A4S02_RS13500	SM00490	helicase superfamily c-terminal domain
A4S02_RS13520	SM00729	Elongator protein 3, MiaB family, Radical SAM
A4S02_RS13525	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13525	SM00962	SRP54-type protein, GTPase domain
A4S02_RS13525	SM00963	SRP54-type protein, helical bundle domain
A4S02_RS13600	SM01018	B12 binding domain
A4S02_RS13610	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13620	SM00671	Sel1-like repeats.
A4S02_RS13650	SM00382	ATPases associated with a variety of cellular activities
A4S02_RS13665	SM01387	A4S02_RS13665
A4S02_RS13670	SM00316	Ribosomal protein S1-like RNA-binding domain
A4S02_RS13670	SM00322	K homology RNA-binding domain
A4S02_RS13685	SM00434	DNA Topoisomerase IV
A4S02_RS13765	SM00849	Metallo-beta-lactamase superfamily
A4S02_RS13810	SM00347	helix_turn_helix multiple antibiotic resistance protein
A4S02_RS13825	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
A4S02_RS14410	SM00829	Enoylreductase
