locus-tag class description CPF11_RS00005 PF03466 LysR substrate binding domain CPF11_RS00005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS00010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_RS00030 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPF11_RS00035 PF01850 PIN domain CPF11_RS00040 PF02069 Prokaryotic metallothionein CPF11_RS00045 PF01022 Bacterial regulatory protein, arsR family CPF11_RS00050 PF06472 ABC transporter transmembrane region 2 CPF11_RS00050 PF00005 ABC transporter CPF11_RS00055 PF03129 Anticodon binding domain CPF11_RS00055 PF02824 TGS domain CPF11_RS00055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_RS00055 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPF11_RS00060 PF01475 Ferric uptake regulator family CPF11_RS00070 PF01227 GTP cyclohydrolase I CPF11_RS00075 PF01502 Phosphoribosyl-AMP cyclohydrolase CPF11_RS00080 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_RS00080 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPF11_RS00145 PF12833 Helix-turn-helix domain CPF11_RS00145 PF02311 AraC-like ligand binding domain CPF11_RS00170 PF02534 Type IV secretory system Conjugative DNA transfer CPF11_RS00180 PF00437 Type II/IV secretion system protein CPF11_RS00185 PF04956 TrbC/VIRB2 family CPF11_RS00195 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CPF11_RS00205 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CPF11_RS00220 PF03743 Bacterial conjugation TrbI-like protein CPF11_RS00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS00230 PF03466 LysR substrate binding domain CPF11_RS00235 PF04542 Sigma-70 region 2 CPF11_RS00235 PF08281 Sigma-70, region 4 CPF11_RS00235 PF12680 SnoaL-like domain CPF11_RS00245 PF00593 TonB dependent receptor CPF11_RS00245 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS00260 PF01618 MotA/TolQ/ExbB proton channel family CPF11_RS00265 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS00280 PF00873 AcrB/AcrD/AcrF family CPF11_RS00290 PF00145 C-5 cytosine-specific DNA methylase CPF11_RS00305 PF03852 DNA mismatch endonuclease Vsr CPF11_RS00310 PF00589 Phage integrase family CPF11_RS00315 PF00155 Aminotransferase class I and II CPF11_RS00315 PF00392 Bacterial regulatory proteins, gntR family CPF11_RS00335 PF04073 Aminoacyl-tRNA editing domain CPF11_RS00375 PF09299 Mu transposase, C-terminal CPF11_RS00375 PF02914 Bacteriophage Mu transposase CPF11_RS00375 PF02316 Mu DNA-binding domain CPF11_RS00375 PF09039 Mu DNA binding, I gamma subdomain CPF11_RS00380 PF09077 Mu B transposition protein, C terminal CPF11_RS00380 PF13401 AAA domain CPF11_RS00450 PF03237 Terminase-like family CPF11_RS00490 PF10124 Mu-like prophage major head subunit gpT CPF11_RS00605 PF01618 MotA/TolQ/ExbB proton channel family CPF11_RS00610 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS00625 PF01566 Natural resistance-associated macrophage protein CPF11_RS00630 PF01325 Iron dependent repressor, N-terminal DNA binding domain CPF11_RS00630 PF02742 Iron dependent repressor, metal binding and dimerisation domain CPF11_RS00640 PF01497 Periplasmic binding protein CPF11_RS00645 PF01032 FecCD transport family CPF11_RS00650 PF00005 ABC transporter CPF11_RS00660 PF01126 Heme oxygenase CPF11_RS00665 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS00665 PF00593 TonB dependent receptor CPF11_RS00670 PF00881 Nitroreductase family CPF11_RS00675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CPF11_RS00675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CPF11_RS00675 PF02770 Acyl-CoA dehydrogenase, middle domain CPF11_RS00685 PF00296 Luciferase-like monooxygenase CPF11_RS00690 PF13195 Protein of unknown function (DUF4011) CPF11_RS00690 PF13087 AAA domain CPF11_RS00690 PF13086 AAA domain CPF11_RS00690 PF13195 Protein of unknown function (DUF4011) CPF11_RS00690 PF13087 AAA domain CPF11_RS00690 PF13086 AAA domain CPF11_RS00695 PF07859 alpha/beta hydrolase fold CPF11_RS00700 PF01425 Amidase CPF11_RS00705 PF00289 Biotin carboxylase, N-terminal domain CPF11_RS00705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPF11_RS00705 PF02785 Biotin carboxylase C-terminal domain CPF11_RS00705 PF00364 Biotin-requiring enzyme CPF11_RS00710 PF09347 Domain of unknown function (DUF1989) CPF11_RS00715 PF09347 Domain of unknown function (DUF1989) CPF11_RS00720 PF08753 NikR C terminal nickel binding domain CPF11_RS00720 PF01402 Ribbon-helix-helix protein, copG family CPF11_RS00725 PF00005 ABC transporter CPF11_RS00730 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS00740 PF13382 Adenine deaminase C-terminal domain CPF11_RS00740 PF01979 Amidohydrolase family CPF11_RS00745 PF07690 Major Facilitator Superfamily CPF11_RS00790 PF00873 AcrB/AcrD/AcrF family CPF11_RS00795 PF02321 Outer membrane efflux protein CPF11_RS00800 PF00012 Hsp70 protein CPF11_RS00815 PF06472 ABC transporter transmembrane region 2 CPF11_RS00815 PF00005 ABC transporter CPF11_RS00820 PF00593 TonB dependent receptor CPF11_RS00820 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS00835 PF08543 Phosphomethylpyrimidine kinase CPF11_RS00840 PF00583 Acetyltransferase (GNAT) family CPF11_RS00845 PF13382 Adenine deaminase C-terminal domain CPF11_RS00845 PF01979 Amidohydrolase family CPF11_RS00850 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CPF11_RS00850 PF06165 Glycosyltransferase family 36 CPF11_RS00850 PF10091 Putative glucoamylase CPF11_RS00860 PF00472 RF-1 domain CPF11_RS00865 PF18011 C-terminal domain found in long catalases CPF11_RS00865 PF06628 Catalase-related immune-responsive CPF11_RS00865 PF00199 Catalase CPF11_RS00870 PF06965 Na+/H+ antiporter 1 CPF11_RS00885 PF17754 MftR C-terminal domain CPF11_RS00885 PF00440 Bacterial regulatory proteins, tetR family CPF11_RS00890 PF13243 Squalene-hopene cyclase C-terminal domain CPF11_RS00890 PF13249 Squalene-hopene cyclase N-terminal domain CPF11_RS00910 PF00005 ABC transporter CPF11_RS00915 PF13533 Biotin-lipoyl like CPF11_RS00930 PF01618 MotA/TolQ/ExbB proton channel family CPF11_RS00935 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS00940 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS00950 PF01979 Amidohydrolase family CPF11_RS00960 PF13454 FAD-NAD(P)-binding CPF11_RS00975 PF00576 HIUase/Transthyretin family CPF11_RS00980 PF00860 Permease family CPF11_RS00985 PF01799 [2Fe-2S] binding domain CPF11_RS00985 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_RS00990 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CPF11_RS00990 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_RS01000 PF01425 Amidase CPF11_RS01015 PF00266 Aminotransferase class-V CPF11_RS01020 PF07687 Peptidase dimerisation domain CPF11_RS01020 PF01546 Peptidase family M20/M25/M40 CPF11_RS01025 PF00593 TonB dependent receptor CPF11_RS01025 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS01030 PF01979 Amidohydrolase family CPF11_RS01045 PF00005 ABC transporter CPF11_RS01060 PF01979 Amidohydrolase family CPF11_RS01065 PF02567 Phenazine biosynthesis-like protein CPF11_RS01080 PF03831 PhnA domain CPF11_RS01080 PF08274 PhnA Zinc-Ribbon CPF11_RS01085 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS01085 PF00107 Zinc-binding dehydrogenase CPF11_RS01090 PF01204 Trehalase CPF11_RS01095 PF00005 ABC transporter CPF11_RS01095 PF16326 ABC transporter C-terminal domain CPF11_RS01100 PF00072 Response regulator receiver domain CPF11_RS01105 PF08281 Sigma-70, region 4 CPF11_RS01105 PF04542 Sigma-70 region 2 CPF11_RS01110 PF08281 Sigma-70, region 4 CPF11_RS01110 PF04542 Sigma-70 region 2 CPF11_RS01120 PF07568 Histidine kinase CPF11_RS01120 PF12282 Signal transduction histidine kinase CPF11_RS01120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS01125 PF00664 ABC transporter transmembrane region CPF11_RS01125 PF00005 ABC transporter CPF11_RS01130 PF00664 ABC transporter transmembrane region CPF11_RS01130 PF00005 ABC transporter CPF11_RS01140 PF00270 DEAD/DEAH box helicase CPF11_RS01140 PF16124 RecQ zinc-binding CPF11_RS01140 PF09382 RQC domain CPF11_RS01140 PF00271 Helicase conserved C-terminal domain CPF11_RS01140 PF00570 HRDC domain CPF11_RS01145 PF08220 DeoR-like helix-turn-helix domain CPF11_RS01145 PF00455 DeoR C terminal sensor domain CPF11_RS01150 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CPF11_RS01150 PF01266 FAD dependent oxidoreductase CPF11_RS01155 PF00230 Major intrinsic protein CPF11_RS01160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CPF11_RS01160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CPF11_RS01170 PF03477 ATP cone domain CPF11_RS01175 PF01029 NusB family CPF11_RS01180 PF00586 AIR synthase related protein, N-terminal domain CPF11_RS01180 PF02769 AIR synthase related protein, C-terminal domain CPF11_RS01220 PF02321 Outer membrane efflux protein CPF11_RS01230 PF00133 tRNA synthetases class I (I, L, M and V) CPF11_RS01230 PF08264 Anticodon-binding domain of tRNA CPF11_RS01230 PF10458 Valyl tRNA synthetase tRNA binding arm CPF11_RS01235 PF01625 Peptide methionine sulfoxide reductase CPF11_RS01240 PF00005 ABC transporter CPF11_RS01245 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS01250 PF00692 dUTPase CPF11_RS01255 PF02441 Flavoprotein CPF11_RS01255 PF04127 DNA / pantothenate metabolism flavoprotein CPF11_RS01260 PF01209 ubiE/COQ5 methyltransferase family CPF11_RS01265 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CPF11_RS01265 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CPF11_RS01265 PF06827 Zinc finger found in FPG and IleRS CPF11_RS01270 PF01649 Ribosomal protein S20 CPF11_RS01275 PF08299 Bacterial dnaA protein helix-turn-helix CPF11_RS01275 PF11638 DnaA N-terminal domain CPF11_RS01275 PF00308 Bacterial dnaA protein CPF11_RS01280 PF02767 DNA polymerase III beta subunit, central domain CPF11_RS01280 PF02768 DNA polymerase III beta subunit, C-terminal domain CPF11_RS01280 PF00712 DNA polymerase III beta subunit, N-terminal domain CPF11_RS01285 PF02463 RecF/RecN/SMC N terminal domain CPF11_RS01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS01290 PF00986 DNA gyrase B subunit, carboxyl terminus CPF11_RS01290 PF00204 DNA gyrase B CPF11_RS01290 PF01751 Toprim domain CPF11_RS01295 PF00793 DAHP synthetase I family CPF11_RS01300 PF06418 CTP synthase N-terminus CPF11_RS01300 PF00117 Glutamine amidotransferase class-I CPF11_RS01310 PF00121 Triosephosphate isomerase CPF11_RS01320 PF04715 Anthranilate synthase component I, N terminal region CPF11_RS01320 PF00425 chorismate binding enzyme CPF11_RS01325 PF00117 Glutamine amidotransferase class-I CPF11_RS01330 PF00591 Glycosyl transferase family, a/b domain CPF11_RS01330 PF02885 Glycosyl transferase family, helical bundle domain CPF11_RS01335 PF00218 Indole-3-glycerol phosphate synthase CPF11_RS01340 PF01967 MoaC family CPF11_RS01345 PF00676 Dehydrogenase E1 component CPF11_RS01350 PF00364 Biotin-requiring enzyme CPF11_RS01350 PF02779 Transketolase, pyrimidine binding domain CPF11_RS01350 PF02780 Transketolase, C-terminal domain CPF11_RS01355 PF02817 e3 binding domain CPF11_RS01355 PF00364 Biotin-requiring enzyme CPF11_RS01355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPF11_RS01360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPF11_RS01360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS01365 PF04055 Radical SAM superfamily CPF11_RS01380 PF02464 Competence-damaged protein CPF11_RS01390 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CPF11_RS01390 PF01464 Transglycosylase SLT domain CPF11_RS01395 PF03741 Integral membrane protein TerC family CPF11_RS01400 PF10397 Adenylosuccinate lyase C-terminus CPF11_RS01400 PF00206 Lyase CPF11_RS01405 PF01259 SAICAR synthetase CPF11_RS01410 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CPF11_RS01425 PF00586 AIR synthase related protein, N-terminal domain CPF11_RS01425 PF02769 AIR synthase related protein, C-terminal domain CPF11_RS01425 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CPF11_RS01430 PF01722 BolA-like protein CPF11_RS01435 PF00462 Glutaredoxin CPF11_RS01445 PF02021 Uncharacterised protein family UPF0102 CPF11_RS01450 PF13091 PLD-like domain CPF11_RS01450 PF13396 Phospholipase_D-nuclease N-terminal CPF11_RS01460 PF01594 AI-2E family transporter CPF11_RS01465 PF00581 Rhodanese-like domain CPF11_RS01470 PF01053 Cys/Met metabolism PLP-dependent enzyme CPF11_RS01475 PF01078 Magnesium chelatase, subunit ChlI CPF11_RS01475 PF13335 Magnesium chelatase, subunit ChlI C-terminal CPF11_RS01480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPF11_RS01480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPF11_RS01485 PF00459 Inositol monophosphatase family CPF11_RS01490 PF00034 Cytochrome c CPF11_RS01495 PF02348 Cytidylyltransferase CPF11_RS01500 PF01842 ACT domain CPF11_RS01500 PF00800 Prephenate dehydratase CPF11_RS01500 PF01817 Chorismate mutase type II CPF11_RS01505 PF00701 Dihydrodipicolinate synthetase family CPF11_RS01510 PF01668 SmpB protein CPF11_RS01515 PF00313 'Cold-shock' DNA-binding domain CPF11_RS01545 PF00698 Acyl transferase domain CPF11_RS01555 PF00550 Phosphopantetheine attachment site CPF11_RS01560 PF02801 Beta-ketoacyl synthase, C-terminal domain CPF11_RS01560 PF00109 Beta-ketoacyl synthase, N-terminal domain CPF11_RS01565 PF02618 YceG-like family CPF11_RS01575 PF00459 Inositol monophosphatase family CPF11_RS01585 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CPF11_RS01590 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CPF11_RS01600 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CPF11_RS01600 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CPF11_RS01610 PF00009 Elongation factor Tu GTP binding domain CPF11_RS01615 PF01507 Phosphoadenosine phosphosulfate reductase family CPF11_RS01620 PF01507 Phosphoadenosine phosphosulfate reductase family CPF11_RS01630 PF04055 Radical SAM superfamily CPF11_RS01630 PF06968 Biotin and Thiamin Synthesis associated domain CPF11_RS01640 PF06508 Queuosine biosynthesis protein QueC CPF11_RS01650 PF06039 Malate:quinone oxidoreductase (Mqo) CPF11_RS01655 PF02566 OsmC-like protein CPF11_RS01660 PF01264 Chorismate synthase CPF11_RS01670 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CPF11_RS01670 PF01243 Pyridoxamine 5'-phosphate oxidase CPF11_RS01685 PF01026 TatD related DNase CPF11_RS01690 PF08264 Anticodon-binding domain of tRNA CPF11_RS01690 PF09334 tRNA synthetases class I (M) CPF11_RS01700 PF02223 Thymidylate kinase CPF11_RS01705 PF00768 D-alanyl-D-alanine carboxypeptidase CPF11_RS01705 PF07943 Penicillin-binding protein 5, C-terminal domain CPF11_RS01710 PF03330 Lytic transglycolase CPF11_RS01710 PF05036 Sporulation related domain CPF11_RS01715 PF13406 Transglycosylase SLT domain CPF11_RS01730 PF13520 Amino acid permease CPF11_RS01735 PF02673 Bacitracin resistance protein BacA CPF11_RS01760 PF17827 PrmC N-terminal domain CPF11_RS01760 PF13847 Methyltransferase domain CPF11_RS01770 PF03462 PCRF domain CPF11_RS01770 PF00472 RF-1 domain CPF11_RS01775 PF03129 Anticodon binding domain CPF11_RS01775 PF13393 Histidyl-tRNA synthetase CPF11_RS01780 PF04551 GcpE protein CPF11_RS01790 PF03060 Nitronate monooxygenase CPF11_RS01795 PF01842 ACT domain CPF11_RS01795 PF13840 ACT domain CPF11_RS01795 PF00696 Amino acid kinase family CPF11_RS01805 PF10282 Lactonase, 7-bladed beta-propeller CPF11_RS01820 PF00462 Glutaredoxin CPF11_RS01830 PF08241 Methyltransferase domain CPF11_RS01835 PF06463 Molybdenum Cofactor Synthesis C CPF11_RS01835 PF04055 Radical SAM superfamily CPF11_RS01840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPF11_RS01840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPF11_RS01840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPF11_RS01840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPF11_RS01845 PF00483 Nucleotidyl transferase CPF11_RS01855 PF03099 Biotin/lipoate A/B protein ligase family CPF11_RS01865 PF01722 BolA-like protein CPF11_RS01870 PF00226 DnaJ domain CPF11_RS01870 PF01556 DnaJ C terminal domain CPF11_RS01870 PF00684 DnaJ central domain CPF11_RS01875 PF12556 Cobaltochelatase CobS subunit N terminal CPF11_RS01875 PF08406 CbbQ/NirQ/NorQ C-terminal CPF11_RS01875 PF07728 AAA domain (dynein-related subfamily) CPF11_RS01880 PF06213 Cobalamin biosynthesis protein CobT CPF11_RS01880 PF11775 Cobalamin biosynthesis protein CobT VWA domain CPF11_RS01885 PF00282 Pyridoxal-dependent decarboxylase conserved domain CPF11_RS01890 PF13593 SBF-like CPA transporter family (DUF4137) CPF11_RS01900 PF02559 CarD-like/TRCF domain CPF11_RS01900 PF00271 Helicase conserved C-terminal domain CPF11_RS01900 PF17757 UvrB interaction domain CPF11_RS01900 PF00270 DEAD/DEAH box helicase CPF11_RS01900 PF03461 TRCF domain CPF11_RS01905 PF03937 Flavinator of succinate dehydrogenase CPF11_RS01910 PF00271 Helicase conserved C-terminal domain CPF11_RS01910 PF17191 RecG wedge domain CPF11_RS01910 PF00270 DEAD/DEAH box helicase CPF11_RS01915 PF02581 Thiamine monophosphate synthase CPF11_RS01920 PF05690 Thiazole biosynthesis protein ThiG CPF11_RS01930 PF01266 FAD dependent oxidoreductase CPF11_RS01940 PF03952 Enolase, N-terminal domain CPF11_RS01940 PF00113 Enolase, C-terminal TIM barrel domain CPF11_RS01950 PF00471 Ribosomal protein L33 CPF11_RS01955 PF00994 Probable molybdopterin binding domain CPF11_RS01955 PF03453 MoeA N-terminal region (domain I and II) CPF11_RS01955 PF03454 MoeA C-terminal region (domain IV) CPF11_RS01960 PF01726 LexA DNA binding domain CPF11_RS01960 PF00717 Peptidase S24-like CPF11_RS01965 PF13649 Methyltransferase domain CPF11_RS01975 PF00155 Aminotransferase class I and II CPF11_RS01980 PF00202 Aminotransferase class-III CPF11_RS01985 PF02391 MoaE protein CPF11_RS01990 PF02597 ThiS family CPF11_RS02000 PF01066 CDP-alcohol phosphatidyltransferase CPF11_RS02005 PF02151 UvrB/uvrC motif CPF11_RS02005 PF01541 GIY-YIG catalytic domain CPF11_RS02005 PF08459 UvrC Helix-hairpin-helix N-terminal CPF11_RS02005 PF12826 Helix-hairpin-helix motif CPF11_RS02025 PF17243 POTRA domain TamA domain 1 CPF11_RS02025 PF07244 Surface antigen variable number repeat CPF11_RS02025 PF01103 Surface antigen CPF11_RS02035 PF01938 TRAM domain CPF11_RS02035 PF04055 Radical SAM superfamily CPF11_RS02035 PF00919 Uncharacterized protein family UPF0004 CPF11_RS02040 PF02562 PhoH-like protein CPF11_RS02045 PF02130 Uncharacterized protein family UPF0054 CPF11_RS02050 PF03471 Transporter associated domain CPF11_RS02050 PF00571 CBS domain CPF11_RS02055 PF13462 Thioredoxin CPF11_RS02060 PF02463 RecF/RecN/SMC N terminal domain CPF11_RS02070 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CPF11_RS02070 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CPF11_RS02080 PF01817 Chorismate mutase type II CPF11_RS02080 PF02153 Prephenate dehydrogenase CPF11_RS02090 PF00285 Citrate synthase, C-terminal domain CPF11_RS02100 PF00156 Phosphoribosyl transferase domain CPF11_RS02105 PF01177 Asp/Glu/Hydantoin racemase CPF11_RS02110 PF00348 Polyprenyl synthetase CPF11_RS02120 PF00268 Ribonucleotide reductase, small chain CPF11_RS02125 PF00317 Ribonucleotide reductase, all-alpha domain CPF11_RS02125 PF02867 Ribonucleotide reductase, barrel domain CPF11_RS02125 PF03477 ATP cone domain CPF11_RS02130 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CPF11_RS02130 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CPF11_RS02135 PF02355 Protein export membrane protein CPF11_RS02135 PF07549 SecD/SecF GG Motif CPF11_RS02140 PF02355 Protein export membrane protein CPF11_RS02140 PF07549 SecD/SecF GG Motif CPF11_RS02150 PF01741 Large-conductance mechanosensitive channel, MscL CPF11_RS02155 PF01197 Ribosomal protein L31 CPF11_RS02160 PF00011 Hsp20/alpha crystallin family CPF11_RS02180 PF00731 AIR carboxylase CPF11_RS02185 PF02222 ATP-grasp domain CPF11_RS02185 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CPF11_RS02190 PF04002 RadC-like JAB domain CPF11_RS02195 PF04002 RadC-like JAB domain CPF11_RS02200 PF00580 UvrD/REP helicase N-terminal domain CPF11_RS02200 PF13361 UvrD-like helicase C-terminal domain CPF11_RS02210 PF01321 Creatinase/Prolidase N-terminal domain CPF11_RS02210 PF00557 Metallopeptidase family M24 CPF11_RS02215 PF18324 Hypothetical protein TT1725 CPF11_RS02215 PF00180 Isocitrate/isopropylmalate dehydrogenase CPF11_RS02225 PF03144 Elongation factor Tu domain 2 CPF11_RS02225 PF16658 Class II release factor RF3, C-terminal domain CPF11_RS02225 PF00009 Elongation factor Tu GTP binding domain CPF11_RS02230 PF01479 S4 domain CPF11_RS02230 PF00163 Ribosomal protein S4/S9 N-terminal domain CPF11_RS02240 PF00999 Sodium/hydrogen exchanger family CPF11_RS02255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPF11_RS02260 PF12849 PBP superfamily domain CPF11_RS02265 PF03483 B3/4 domain CPF11_RS02265 PF03484 tRNA synthetase B5 domain CPF11_RS02265 PF03147 Ferredoxin-fold anticodon binding domain CPF11_RS02265 PF01588 Putative tRNA binding domain CPF11_RS02265 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CPF11_RS02270 PF01409 tRNA synthetases class II core domain (F) CPF11_RS02270 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CPF11_RS02275 PF00453 Ribosomal protein L20 CPF11_RS02280 PF01632 Ribosomal protein L35 CPF11_RS02285 PF01232 Mannitol dehydrogenase Rossmann domain CPF11_RS02285 PF08125 Mannitol dehydrogenase C-terminal domain CPF11_RS02290 PF00034 Cytochrome c CPF11_RS02290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_RS02290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_RS02295 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_RS02295 PF01799 [2Fe-2S] binding domain CPF11_RS02300 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_RS02305 PF02657 Fe-S metabolism associated domain CPF11_RS02310 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS02310 PF07724 AAA domain (Cdc48 subfamily) CPF11_RS02310 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_RS02315 PF00227 Proteasome subunit CPF11_RS02320 PF08448 PAS fold CPF11_RS02320 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS02320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS02320 PF00072 Response regulator receiver domain CPF11_RS02320 PF13188 PAS domain CPF11_RS02325 PF13188 PAS domain CPF11_RS02325 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS02325 PF08448 PAS fold CPF11_RS02325 PF00072 Response regulator receiver domain CPF11_RS02325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS02340 PF00005 ABC transporter CPF11_RS02355 PF00756 Putative esterase CPF11_RS02360 PF01062 Bestrophin, RFP-TM, chloride channel CPF11_RS02365 PF02559 CarD-like/TRCF domain CPF11_RS02380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_RS02390 PF13417 Glutathione S-transferase, N-terminal domain CPF11_RS02390 PF00043 Glutathione S-transferase, C-terminal domain CPF11_RS02395 PF05209 Septum formation inhibitor MinC, N-terminal domain CPF11_RS02395 PF03775 Septum formation inhibitor MinC, C-terminal domain CPF11_RS02400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_RS02405 PF03776 Septum formation topological specificity factor MinE CPF11_RS02410 PF07729 FCD domain CPF11_RS02410 PF00392 Bacterial regulatory proteins, gntR family CPF11_RS02415 PF00005 ABC transporter CPF11_RS02415 PF00664 ABC transporter transmembrane region CPF11_RS02435 PF04453 LPS transport system D CPF11_RS02440 PF09312 SurA N-terminal domain CPF11_RS02440 PF00639 PPIC-type PPIASE domain CPF11_RS02445 PF00398 Ribosomal RNA adenine dimethylase CPF11_RS02455 PF03948 Ribosomal protein L9, C-terminal domain CPF11_RS02455 PF01281 Ribosomal protein L9, N-terminal domain CPF11_RS02460 PF01084 Ribosomal protein S18 CPF11_RS02465 PF01250 Ribosomal protein S6 CPF11_RS02475 PF04546 Sigma-70, non-essential region CPF11_RS02475 PF03979 Sigma-70 factor, region 1.1 CPF11_RS02475 PF04542 Sigma-70 region 2 CPF11_RS02475 PF04539 Sigma-70 region 3 CPF11_RS02475 PF04545 Sigma-70, region 4 CPF11_RS02475 PF00140 Sigma-70 factor, region 1.2 CPF11_RS02480 PF08278 DNA primase DnaG DnaB-binding CPF11_RS02480 PF13662 Toprim domain CPF11_RS02480 PF08275 DNA primase catalytic core, N-terminal domain CPF11_RS02480 PF01807 CHC2 zinc finger CPF11_RS02480 PF10410 DnaB-helicase binding domain of primase CPF11_RS02490 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CPF11_RS02490 PF00117 Glutamine amidotransferase class-I CPF11_RS02495 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPF11_RS02495 PF02142 MGS-like domain CPF11_RS02495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPF11_RS02500 PF03449 Transcription elongation factor, N-terminal CPF11_RS02500 PF01272 Transcription elongation factor, GreA/GreB, C-term CPF11_RS02505 PF13291 ACT domain CPF11_RS02505 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_RS02510 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CPF11_RS02510 PF01676 Metalloenzyme superfamily CPF11_RS02525 PF03572 Peptidase family S41 CPF11_RS02525 PF13180 PDZ domain CPF11_RS02535 PF00293 NUDIX domain CPF11_RS02540 PF07690 Major Facilitator Superfamily CPF11_RS02545 PF13533 Biotin-lipoyl like CPF11_RS02550 PF00005 ABC transporter CPF11_RS02550 PF00664 ABC transporter transmembrane region CPF11_RS02555 PF13735 tRNA nucleotidyltransferase domain 2 putative CPF11_RS02555 PF12627 Probable RNA and SrmB- binding site of polymerase A CPF11_RS02555 PF01743 Poly A polymerase head domain CPF11_RS02565 PF07726 ATPase family associated with various cellular activities (AAA) CPF11_RS02565 PF17863 AAA lid domain CPF11_RS02590 PF18755 Restriction Enzyme Adenine Methylase Associated CPF11_RS02590 PF01555 DNA methylase CPF11_RS02595 PF01351 Ribonuclease HII CPF11_RS02600 PF05532 CsbD-like CPF11_RS02605 PF07690 Major Facilitator Superfamily CPF11_RS02610 PF13533 Biotin-lipoyl like CPF11_RS02615 PF00873 AcrB/AcrD/AcrF family CPF11_RS02620 PF00873 AcrB/AcrD/AcrF family CPF11_RS02625 PF02321 Outer membrane efflux protein CPF11_RS02630 PF07043 Protein of unknown function (DUF1328) CPF11_RS02640 PF00005 ABC transporter CPF11_RS02645 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS02655 PF01196 Ribosomal protein L17 CPF11_RS02660 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CPF11_RS02660 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CPF11_RS02660 PF01000 RNA polymerase Rpb3/RpoA insert domain CPF11_RS02665 PF00411 Ribosomal protein S11 CPF11_RS02670 PF00416 Ribosomal protein S13/S18 CPF11_RS02675 PF05191 Adenylate kinase, active site lid CPF11_RS02680 PF00344 SecY translocase CPF11_RS02685 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CPF11_RS02690 PF00327 Ribosomal protein L30p/L7e CPF11_RS02695 PF00333 Ribosomal protein S5, N-terminal domain CPF11_RS02695 PF03719 Ribosomal protein S5, C-terminal domain CPF11_RS02700 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CPF11_RS02705 PF00347 Ribosomal protein L6 CPF11_RS02710 PF00410 Ribosomal protein S8 CPF11_RS02715 PF00253 Ribosomal protein S14p/S29e CPF11_RS02720 PF00281 Ribosomal protein L5 CPF11_RS02720 PF00673 ribosomal L5P family C-terminus CPF11_RS02725 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CPF11_RS02730 PF00238 Ribosomal protein L14p/L23e CPF11_RS02735 PF00366 Ribosomal protein S17 CPF11_RS02740 PF00831 Ribosomal L29 protein CPF11_RS02745 PF00252 Ribosomal protein L16p/L10e CPF11_RS02750 PF07650 KH domain CPF11_RS02750 PF00189 Ribosomal protein S3, C-terminal domain CPF11_RS02755 PF00237 Ribosomal protein L22p/L17e CPF11_RS02760 PF00203 Ribosomal protein S19 CPF11_RS02765 PF00181 Ribosomal Proteins L2, RNA binding domain CPF11_RS02765 PF03947 Ribosomal Proteins L2, C-terminal domain CPF11_RS02770 PF00276 Ribosomal protein L23 CPF11_RS02775 PF00573 Ribosomal protein L4/L1 family CPF11_RS02780 PF00297 Ribosomal protein L3 CPF11_RS02785 PF00338 Ribosomal protein S10p/S20e CPF11_RS02790 PF00009 Elongation factor Tu GTP binding domain CPF11_RS02790 PF03144 Elongation factor Tu domain 2 CPF11_RS02790 PF03143 Elongation factor Tu C-terminal domain CPF11_RS02795 PF00177 Ribosomal protein S7p/S5e CPF11_RS02800 PF00164 Ribosomal protein S12/S23 CPF11_RS02805 PF04997 RNA polymerase Rpb1, domain 1 CPF11_RS02805 PF00623 RNA polymerase Rpb1, domain 2 CPF11_RS02805 PF05000 RNA polymerase Rpb1, domain 4 CPF11_RS02805 PF04983 RNA polymerase Rpb1, domain 3 CPF11_RS02805 PF04998 RNA polymerase Rpb1, domain 5 CPF11_RS02810 PF00562 RNA polymerase Rpb2, domain 6 CPF11_RS02810 PF10385 RNA polymerase beta subunit external 1 domain CPF11_RS02810 PF04565 RNA polymerase Rpb2, domain 3 CPF11_RS02810 PF04563 RNA polymerase beta subunit CPF11_RS02810 PF04560 RNA polymerase Rpb2, domain 7 CPF11_RS02810 PF04561 RNA polymerase Rpb2, domain 2 CPF11_RS02820 PF00542 Ribosomal protein L7/L12 C-terminal domain CPF11_RS02820 PF16320 Ribosomal protein L7/L12 dimerisation domain CPF11_RS02825 PF00466 Ribosomal protein L10 CPF11_RS02830 PF00687 Ribosomal protein L1p/L10e family CPF11_RS02835 PF03946 Ribosomal protein L11, N-terminal domain CPF11_RS02835 PF00298 Ribosomal protein L11, RNA binding domain CPF11_RS02840 PF02321 Outer membrane efflux protein CPF11_RS02845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPF11_RS02850 PF00873 AcrB/AcrD/AcrF family CPF11_RS02855 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS02860 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS02860 PF00072 Response regulator receiver domain CPF11_RS02865 PF02646 RmuC family CPF11_RS02870 PF00083 Sugar (and other) transporter CPF11_RS02880 PF00578 AhpC/TSA family CPF11_RS02885 PF08335 GlnD PII-uridylyltransferase CPF11_RS02885 PF03710 Glutamate-ammonia ligase adenylyltransferase CPF11_RS02910 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CPF11_RS02915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPF11_RS02915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CPF11_RS02945 PF01578 Cytochrome C assembly protein CPF11_RS02950 PF03100 CcmE CPF11_RS02955 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CPF11_RS02955 PF01578 Cytochrome C assembly protein CPF11_RS02960 PF08534 Redoxin CPF11_RS02965 PF03918 Cytochrome C biogenesis protein CPF11_RS02985 PF04632 Fusaric acid resistance protein family CPF11_RS02990 PF04632 Fusaric acid resistance protein family CPF11_RS02995 PF07885 Ion channel CPF11_RS02995 PF17655 Inward rectifier potassium channel C-terminal domain CPF11_RS03015 PF00005 ABC transporter CPF11_RS03025 PF02743 Cache domain CPF11_RS03025 PF00672 HAMP domain CPF11_RS03025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CPF11_RS03030 PF02541 Ppx/GppA phosphatase family CPF11_RS03035 PF13090 Polyphosphate kinase C-terminal domain 2 CPF11_RS03035 PF02503 Polyphosphate kinase middle domain CPF11_RS03035 PF13089 Polyphosphate kinase N-terminal domain CPF11_RS03035 PF17941 Polyphosphate kinase C-terminal domain 1 CPF11_RS03045 PF02769 AIR synthase related protein, C-terminal domain CPF11_RS03045 PF00586 AIR synthase related protein, N-terminal domain CPF11_RS03050 PF00551 Formyl transferase CPF11_RS03055 PF01189 16S rRNA methyltransferase RsmB/F CPF11_RS03055 PF01029 NusB family CPF11_RS03060 PF00834 Ribulose-phosphate 3 epimerase family CPF11_RS03070 PF13579 Glycosyl transferase 4-like domain CPF11_RS03070 PF00534 Glycosyl transferases group 1 CPF11_RS03080 PF00929 Exonuclease CPF11_RS03085 PF01121 Dephospho-CoA kinase CPF11_RS03090 PF01488 Shikimate / quinate 5-dehydrogenase CPF11_RS03090 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CPF11_RS03090 PF08501 Shikimate dehydrogenase substrate binding domain CPF11_RS03110 PF00206 Lyase CPF11_RS03110 PF14698 Argininosuccinate lyase C-terminal CPF11_RS03115 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPF11_RS03115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPF11_RS03125 PF16363 GDP-mannose 4,6 dehydratase CPF11_RS03130 PF00089 Trypsin CPF11_RS03135 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS03140 PF01022 Bacterial regulatory protein, arsR family CPF11_RS03145 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_RS03150 PF02548 Ketopantoate hydroxymethyltransferase CPF11_RS03300 PF00589 Phage integrase family CPF11_RS03300 PF13356 Arm DNA-binding domain CPF11_RS03330 PF09827 CRISPR associated protein Cas2 CPF11_RS03335 PF01867 CRISPR associated protein Cas1 CPF11_RS03355 PF09704 CRISPR-associated protein (Cas_Cas5) CPF11_RS03380 PF12833 Helix-turn-helix domain CPF11_RS03380 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CPF11_RS03415 PF02423 Ornithine cyclodeaminase/mu-crystallin family CPF11_RS03420 PF00881 Nitroreductase family CPF11_RS03440 PF01048 Phosphorylase superfamily CPF11_RS03445 PF00033 Cytochrome b/b6/petB CPF11_RS03445 PF02167 Cytochrome C1 family CPF11_RS03445 PF00032 Cytochrome b(C-terminal)/b6/petD CPF11_RS03450 PF00032 Cytochrome b(C-terminal)/b6/petD CPF11_RS03450 PF02167 Cytochrome C1 family CPF11_RS03450 PF00033 Cytochrome b/b6/petB CPF11_RS03455 PF01218 Coproporphyrinogen III oxidase CPF11_RS03465 PF01713 Smr domain CPF11_RS03465 PF00488 MutS domain V CPF11_RS03470 PF03150 Di-haem cytochrome c peroxidase CPF11_RS03470 PF00034 Cytochrome c CPF11_RS03475 PF01555 DNA methylase CPF11_RS03485 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_RS03485 PF00934 PE family CPF11_RS03490 PF02556 Preprotein translocase subunit SecB CPF11_RS03500 PF03900 Porphobilinogen deaminase, C-terminal domain CPF11_RS03500 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CPF11_RS03505 PF00814 Glycoprotease family CPF11_RS03510 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CPF11_RS03525 PF01921 tRNA synthetases class I (K) CPF11_RS03530 PF02464 Competence-damaged protein CPF11_RS03530 PF00994 Probable molybdopterin binding domain CPF11_RS03530 PF18146 Damage-inducible protein CinA KH domain CPF11_RS03535 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CPF11_RS03540 PF02899 Phage integrase, N-terminal SAM-like domain CPF11_RS03540 PF00589 Phage integrase family CPF11_RS03550 PF01761 3-dehydroquinate synthase CPF11_RS03555 PF00691 OmpA family CPF11_RS03565 PF01411 tRNA synthetases class II (A) CPF11_RS03565 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPF11_RS03565 PF02272 DHHA1 domain CPF11_RS03570 PF02666 Phosphatidylserine decarboxylase CPF11_RS03575 PF01066 CDP-alcohol phosphatidyltransferase CPF11_RS03580 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CPF11_RS03585 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CPF11_RS03615 PF00753 Metallo-beta-lactamase superfamily CPF11_RS03615 PF16123 Hydroxyacylglutathione hydrolase C-terminus CPF11_RS03630 PF05221 S-adenosyl-L-homocysteine hydrolase CPF11_RS03630 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CPF11_RS03645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPF11_RS03645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS03650 PF02817 e3 binding domain CPF11_RS03650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CPF11_RS03650 PF00364 Biotin-requiring enzyme CPF11_RS03655 PF16870 2-oxoglutarate dehydrogenase C-terminal CPF11_RS03655 PF02779 Transketolase, pyrimidine binding domain CPF11_RS03655 PF16078 2-oxoglutarate dehydrogenase N-terminus CPF11_RS03655 PF00676 Dehydrogenase E1 component CPF11_RS03660 PF03969 AFG1-like ATPase CPF11_RS03665 PF02627 Carboxymuconolactone decarboxylase family CPF11_RS03670 PF00753 Metallo-beta-lactamase superfamily CPF11_RS03670 PF13567 Domain of unknown function (DUF4131) CPF11_RS03670 PF03772 Competence protein CPF11_RS03675 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPF11_RS03680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPF11_RS03680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPF11_RS03685 PF01979 Amidohydrolase family CPF11_RS03690 PF02660 Glycerol-3-phosphate acyltransferase CPF11_RS03695 PF17782 DprA winged helix domain CPF11_RS03695 PF02481 DNA recombination-mediator protein A CPF11_RS03700 PF13368 Topoisomerase C-terminal repeat CPF11_RS03700 PF01396 Topoisomerase DNA binding C4 zinc finger CPF11_RS03700 PF01751 Toprim domain CPF11_RS03700 PF01131 DNA topoisomerase CPF11_RS03705 PF17876 Cold shock domain CPF11_RS03705 PF08461 Ribonuclease R winged-helix domain CPF11_RS03705 PF08206 Ribonuclease B OB domain CPF11_RS03705 PF00773 RNB domain CPF11_RS03705 PF00575 S1 RNA binding domain CPF11_RS03710 PF03572 Peptidase family S41 CPF11_RS03710 PF13180 PDZ domain CPF11_RS03720 PF00691 OmpA family CPF11_RS03725 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_RS03730 PF02082 Transcriptional regulator CPF11_RS03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS03745 PF00986 DNA gyrase B subunit, carboxyl terminus CPF11_RS03745 PF01751 Toprim domain CPF11_RS03745 PF00204 DNA gyrase B CPF11_RS03750 PF00892 EamA-like transporter family CPF11_RS03755 PF00361 Proton-conducting membrane transporter CPF11_RS03755 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CPF11_RS03760 PF08676 MutL C terminal dimerisation domain CPF11_RS03760 PF01119 DNA mismatch repair protein, C-terminal domain CPF11_RS03770 PF01252 Signal peptidase (SPase) II CPF11_RS03775 PF08264 Anticodon-binding domain of tRNA CPF11_RS03775 PF00133 tRNA synthetases class I (I, L, M and V) CPF11_RS03775 PF06827 Zinc finger found in FPG and IleRS CPF11_RS03780 PF06574 FAD synthetase CPF11_RS03780 PF01687 Riboflavin kinase CPF11_RS03790 PF03079 ARD/ARD' family CPF11_RS03795 PF00596 Class II Aldolase and Adducin N-terminal domain CPF11_RS03800 PF02416 mttA/Hcf106 family CPF11_RS03815 PF00202 Aminotransferase class-III CPF11_RS03820 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CPF11_RS03820 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CPF11_RS03830 PF01430 Hsp33 protein CPF11_RS03840 PF08482 ATP-dependent helicase C-terminal CPF11_RS03840 PF04408 Helicase associated domain (HA2) CPF11_RS03840 PF00270 DEAD/DEAH box helicase CPF11_RS03840 PF00271 Helicase conserved C-terminal domain CPF11_RS03845 PF13180 PDZ domain CPF11_RS03850 PF00248 Aldo/keto reductase family CPF11_RS03860 PF02789 Cytosol aminopeptidase family, N-terminal domain CPF11_RS03860 PF00883 Cytosol aminopeptidase family, catalytic domain CPF11_RS03865 PF00459 Inositol monophosphatase family CPF11_RS03870 PF01300 Telomere recombination CPF11_RS03870 PF03481 Putative GTP-binding controlling metal-binding CPF11_RS03880 PF02913 FAD linked oxidases, C-terminal domain CPF11_RS03880 PF01565 FAD binding domain CPF11_RS03895 PF01923 Cobalamin adenosyltransferase CPF11_RS03925 PF00501 AMP-binding enzyme CPF11_RS03925 PF16177 Acetyl-coenzyme A synthetase N-terminus CPF11_RS03925 PF13193 AMP-binding enzyme C-terminal domain CPF11_RS03940 PF01619 Proline dehydrogenase CPF11_RS03940 PF14850 DNA-binding domain of Proline dehydrogenase CPF11_RS03940 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CPF11_RS03940 PF00171 Aldehyde dehydrogenase family CPF11_RS03950 PF00324 Amino acid permease CPF11_RS03970 PF18073 Rubredoxin metal binding domain CPF11_RS03970 PF06745 KaiC CPF11_RS03980 PF02405 Permease MlaE CPF11_RS03985 PF00005 ABC transporter CPF11_RS03990 PF12794 Mechanosensitive ion channel inner membrane domain 1 CPF11_RS03990 PF00924 Mechanosensitive ion channel CPF11_RS03990 PF12795 Mechanosensitive ion channel porin domain CPF11_RS03995 PF03796 DnaB-like helicase C terminal domain CPF11_RS03995 PF00772 DnaB-like helicase N terminal domain CPF11_RS04005 PF00294 pfkB family carbohydrate kinase CPF11_RS04005 PF01467 Cytidylyltransferase-like CPF11_RS04010 PF00625 Guanylate kinase CPF11_RS04015 PF00106 short chain dehydrogenase CPF11_RS04015 PF00561 alpha/beta hydrolase fold CPF11_RS04020 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CPF11_RS04025 PF08032 RNA 2'-O ribose methyltransferase substrate binding CPF11_RS04025 PF00588 SpoU rRNA Methylase family CPF11_RS04030 PF00570 HRDC domain CPF11_RS04030 PF01612 3'-5' exonuclease CPF11_RS04035 PF01380 SIS domain CPF11_RS04035 PF00571 CBS domain CPF11_RS04050 PF00005 ABC transporter CPF11_RS04055 PF03476 MOSC N-terminal beta barrel domain CPF11_RS04055 PF03473 MOSC domain CPF11_RS04055 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_RS04065 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CPF11_RS04065 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CPF11_RS04075 PF00011 Hsp20/alpha crystallin family CPF11_RS04085 PF01327 Polypeptide deformylase CPF11_RS04090 PF02911 Formyl transferase, C-terminal domain CPF11_RS04090 PF00551 Formyl transferase CPF11_RS04095 PF01416 tRNA pseudouridine synthase CPF11_RS04105 PF07687 Peptidase dimerisation domain CPF11_RS04105 PF01546 Peptidase family M20/M25/M40 CPF11_RS04110 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_RS04110 PF14602 Hexapeptide repeat of succinyl-transferase CPF11_RS04110 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CPF11_RS04115 PF00696 Amino acid kinase family CPF11_RS04120 PF01926 50S ribosome-binding GTPase CPF11_RS04125 PF14849 YidC periplasmic domain CPF11_RS04125 PF02096 60Kd inner membrane protein CPF11_RS04130 PF00825 Ribonuclease P CPF11_RS04135 PF00468 Ribosomal protein L34 CPF11_RS04145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPF11_RS04150 PF17930 LpxI N-terminal domain CPF11_RS04150 PF06230 LpxI C-terminal domain CPF11_RS04155 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CPF11_RS04155 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_RS04160 PF07977 FabA-like domain CPF11_RS04165 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_RS04165 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CPF11_RS04175 PF01103 Surface antigen CPF11_RS04175 PF07244 Surface antigen variable number repeat CPF11_RS04180 PF17820 PDZ domain CPF11_RS04180 PF02163 Peptidase family M50 CPF11_RS04185 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CPF11_RS04185 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CPF11_RS04185 PF13288 DXP reductoisomerase C-terminal domain CPF11_RS04195 PF01255 Putative undecaprenyl diphosphate synthase CPF11_RS04200 PF01765 Ribosome recycling factor CPF11_RS04205 PF00696 Amino acid kinase family CPF11_RS04210 PF01926 50S ribosome-binding GTPase CPF11_RS04210 PF07650 KH domain CPF11_RS04215 PF14622 Ribonuclease-III-like CPF11_RS04215 PF00035 Double-stranded RNA binding motif CPF11_RS04220 PF10502 Signal peptidase, peptidase S26 CPF11_RS04225 PF01648 4'-phosphopantetheinyl transferase superfamily CPF11_RS04230 PF02824 TGS domain CPF11_RS04230 PF04607 Region found in RelA / SpoT proteins CPF11_RS04230 PF13291 ACT domain CPF11_RS04235 PF01192 RNA polymerase Rpb6 CPF11_RS04240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CPF11_RS04250 PF00484 Carbonic anhydrase CPF11_RS04260 PF00271 Helicase conserved C-terminal domain CPF11_RS04260 PF00270 DEAD/DEAH box helicase CPF11_RS04265 PF00561 alpha/beta hydrolase fold CPF11_RS04265 PF07021 Methionine biosynthesis protein MetW CPF11_RS04270 PF00561 alpha/beta hydrolase fold CPF11_RS04275 PF00679 Elongation factor G C-terminus CPF11_RS04275 PF03144 Elongation factor Tu domain 2 CPF11_RS04275 PF06421 GTP-binding protein LepA C-terminus CPF11_RS04275 PF00009 Elongation factor Tu GTP binding domain CPF11_RS04290 PF01011 PQQ enzyme repeat CPF11_RS04300 PF03951 Glutamine synthetase, beta-Grasp domain CPF11_RS04300 PF00120 Glutamine synthetase, catalytic domain CPF11_RS04305 PF00543 Nitrogen regulatory protein P-II CPF11_RS04310 PF00155 Aminotransferase class I and II CPF11_RS04335 PF00180 Isocitrate/isopropylmalate dehydrogenase CPF11_RS04340 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS04345 PF01266 FAD dependent oxidoreductase CPF11_RS04355 PF03144 Elongation factor Tu domain 2 CPF11_RS04355 PF00009 Elongation factor Tu GTP binding domain CPF11_RS04355 PF00679 Elongation factor G C-terminus CPF11_RS04375 PF00224 Pyruvate kinase, barrel domain CPF11_RS04375 PF02887 Pyruvate kinase, alpha/beta domain CPF11_RS04385 PF00899 ThiF family CPF11_RS04420 PF03169 OPT oligopeptide transporter protein CPF11_RS04435 PF00561 alpha/beta hydrolase fold CPF11_RS04445 PF01545 Cation efflux family CPF11_RS04450 PF01545 Cation efflux family CPF11_RS04450 PF16916 Dimerisation domain of Zinc Transporter CPF11_RS04460 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPF11_RS04460 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_RS04470 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS04480 PF00011 Hsp20/alpha crystallin family CPF11_RS04485 PF00561 alpha/beta hydrolase fold CPF11_RS04485 PF00364 Biotin-requiring enzyme CPF11_RS04490 PF02780 Transketolase, C-terminal domain CPF11_RS04490 PF02779 Transketolase, pyrimidine binding domain CPF11_RS04495 PF00676 Dehydrogenase E1 component CPF11_RS04505 PF01384 Phosphate transporter family CPF11_RS04510 PF03976 Polyphosphate kinase 2 (PPK2) CPF11_RS04530 PF01431 Peptidase family M13 CPF11_RS04530 PF05649 Peptidase family M13 CPF11_RS04545 PF03061 Thioesterase superfamily CPF11_RS04570 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CPF11_RS04575 PF00106 short chain dehydrogenase CPF11_RS04580 PF02082 Transcriptional regulator CPF11_RS04585 PF04343 Protein of unknown function, DUF488 CPF11_RS04590 PF00551 Formyl transferase CPF11_RS04620 PF00999 Sodium/hydrogen exchanger family CPF11_RS04735 PF17773 UPF0176 acylphosphatase like domain CPF11_RS04735 PF00581 Rhodanese-like domain CPF11_RS04760 PF01757 Acyltransferase family CPF11_RS04850 PF00593 TonB dependent receptor CPF11_RS04850 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS04920 PF02325 YGGT family CPF11_RS04930 PF02796 Helix-turn-helix domain of resolvase CPF11_RS04930 PF00239 Resolvase, N terminal domain CPF11_RS04975 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_RS04975 PF01799 [2Fe-2S] binding domain CPF11_RS04980 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_RS04985 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_RS04985 PF00034 Cytochrome c CPF11_RS04990 PF00171 Aldehyde dehydrogenase family CPF11_RS04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS04995 PF03466 LysR substrate binding domain CPF11_RS05000 PF00248 Aldo/keto reductase family CPF11_RS05010 PF00578 AhpC/TSA family CPF11_RS05025 PF02975 Methylamine dehydrogenase, L chain CPF11_RS05030 PF00578 AhpC/TSA family CPF11_RS05035 PF07291 Methylamine utilisation protein MauE CPF11_RS05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS05045 PF03466 LysR substrate binding domain CPF11_RS05075 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CPF11_RS05075 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CPF11_RS05090 PF00155 Aminotransferase class I and II CPF11_RS05105 PF01641 SelR domain CPF11_RS05110 PF00875 DNA photolyase CPF11_RS05110 PF03441 FAD binding domain of DNA photolyase CPF11_RS05130 PF13580 SIS domain CPF11_RS05135 PF01869 BadF/BadG/BcrA/BcrD ATPase family CPF11_RS05140 PF07691 PA14 domain CPF11_RS05140 PF02838 Glycosyl hydrolase family 20, domain 2 CPF11_RS05140 PF00728 Glycosyl hydrolase family 20, catalytic domain CPF11_RS05145 PF00005 ABC transporter CPF11_RS05150 PF01032 FecCD transport family CPF11_RS05160 PF00593 TonB dependent receptor CPF11_RS05160 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS05165 PF00999 Sodium/hydrogen exchanger family CPF11_RS05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS05170 PF03466 LysR substrate binding domain CPF11_RS05215 PF14572 Phosphoribosyl synthetase-associated domain CPF11_RS05215 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CPF11_RS05225 PF00005 ABC transporter CPF11_RS05230 PF01554 MatE CPF11_RS05245 PF00106 short chain dehydrogenase CPF11_RS05255 PF00288 GHMP kinases N terminal domain CPF11_RS05255 PF08544 GHMP kinases C terminal CPF11_RS05265 PF03167 Uracil DNA glycosylase superfamily CPF11_RS05270 PF01464 Transglycosylase SLT domain CPF11_RS05275 PF00571 CBS domain CPF11_RS05275 PF01595 Cyclin M transmembrane N-terminal domain CPF11_RS05275 PF03471 Transporter associated domain CPF11_RS05280 PF04055 Radical SAM superfamily CPF11_RS05280 PF06463 Molybdenum Cofactor Synthesis C CPF11_RS05295 PF02780 Transketolase, C-terminal domain CPF11_RS05295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPF11_RS05295 PF02779 Transketolase, pyrimidine binding domain CPF11_RS05315 PF04794 YdjC-like protein CPF11_RS05330 PF00692 dUTPase CPF11_RS05335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPF11_RS05340 PF13536 Putative multidrug resistance efflux transporter CPF11_RS05350 PF13183 4Fe-4S dicluster domain CPF11_RS05350 PF11870 Domain of unknown function (DUF3390) CPF11_RS05350 PF02589 LUD domain CPF11_RS05355 PF02754 Cysteine-rich domain CPF11_RS05360 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_RS05360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_RS05360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_RS05370 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_RS05370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_RS05370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_RS05375 PF03306 Alpha-acetolactate decarboxylase CPF11_RS05380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS05380 PF03466 LysR substrate binding domain CPF11_RS05390 PF02590 Predicted SPOUT methyltransferase CPF11_RS05400 PF01467 Cytidylyltransferase-like CPF11_RS05405 PF00171 Aldehyde dehydrogenase family CPF11_RS05410 PF06071 Protein of unknown function (DUF933) CPF11_RS05410 PF01926 50S ribosome-binding GTPase CPF11_RS05415 PF01195 Peptidyl-tRNA hydrolase CPF11_RS05420 PF14693 Ribosomal protein TL5, C-terminal domain CPF11_RS05420 PF01386 Ribosomal L25p family CPF11_RS05425 PF01212 Beta-eliminating lyase CPF11_RS05430 PF00152 tRNA synthetases class II (D, K and N) CPF11_RS05430 PF01336 OB-fold nucleic acid binding domain CPF11_RS05430 PF02938 GAD domain CPF11_RS05445 PF02073 Thermophilic metalloprotease (M29) CPF11_RS05460 PF07690 Major Facilitator Superfamily CPF11_RS05465 PF13193 AMP-binding enzyme C-terminal domain CPF11_RS05465 PF00501 AMP-binding enzyme CPF11_RS05465 PF16177 Acetyl-coenzyme A synthetase N-terminus CPF11_RS05475 PF00285 Citrate synthase, C-terminal domain CPF11_RS05480 PF03972 MmgE/PrpD family CPF11_RS05485 PF01381 Helix-turn-helix CPF11_RS05485 PF09856 Predicted transcriptional regulator (DUF2083) CPF11_RS05485 PF06114 IrrE N-terminal-like domain CPF11_RS05510 PF01757 Acyltransferase family CPF11_RS05570 PF07690 Major Facilitator Superfamily CPF11_RS05575 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_RS05580 PF00501 AMP-binding enzyme CPF11_RS05585 PF02801 Beta-ketoacyl synthase, C-terminal domain CPF11_RS05585 PF00109 Beta-ketoacyl synthase, N-terminal domain CPF11_RS05585 PF14765 Polyketide synthase dehydratase CPF11_RS05585 PF08659 KR domain CPF11_RS05585 PF00550 Phosphopantetheine attachment site CPF11_RS05585 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS05585 PF16197 Ketoacyl-synthetase C-terminal extension CPF11_RS05585 PF00698 Acyl transferase domain CPF11_RS05595 PF16197 Ketoacyl-synthetase C-terminal extension CPF11_RS05595 PF00975 Thioesterase domain CPF11_RS05595 PF08659 KR domain CPF11_RS05595 PF00550 Phosphopantetheine attachment site CPF11_RS05595 PF00698 Acyl transferase domain CPF11_RS05595 PF00109 Beta-ketoacyl synthase, N-terminal domain CPF11_RS05595 PF02801 Beta-ketoacyl synthase, C-terminal domain CPF11_RS05595 PF08990 Erythronolide synthase docking CPF11_RS05595 PF18369 Polyketide synthase dimerisation element domain CPF11_RS05600 PF13193 AMP-binding enzyme C-terminal domain CPF11_RS05600 PF00501 AMP-binding enzyme CPF11_RS05625 PF02384 N-6 DNA Methylase CPF11_RS05630 PF01420 Type I restriction modification DNA specificity domain CPF11_RS05655 PF00183 Hsp90 protein CPF11_RS05665 PF03819 MazG nucleotide pyrophosphohydrolase domain CPF11_RS05670 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPF11_RS05695 PF00005 ABC transporter CPF11_RS05695 PF03412 Peptidase C39 family CPF11_RS05695 PF00664 ABC transporter transmembrane region CPF11_RS05700 PF00107 Zinc-binding dehydrogenase CPF11_RS05700 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS05705 PF00571 CBS domain CPF11_RS05705 PF01595 Cyclin M transmembrane N-terminal domain CPF11_RS05705 PF03471 Transporter associated domain CPF11_RS05710 PF00328 Histidine phosphatase superfamily (branch 2) CPF11_RS05730 PF12849 PBP superfamily domain CPF11_RS05735 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS05735 PF00989 PAS fold CPF11_RS05735 PF11808 Phosphate regulon sensor protein PhoR CPF11_RS05735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS05740 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS05740 PF00072 Response regulator receiver domain CPF11_RS05745 PF00709 Adenylosuccinate synthetase CPF11_RS05750 PF13393 Histidyl-tRNA synthetase CPF11_RS05760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS05760 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPF11_RS05765 PF00290 Tryptophan synthase alpha chain CPF11_RS05770 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_RS05775 PF00589 Phage integrase family CPF11_RS05775 PF02920 DNA binding domain of tn916 integrase CPF11_RS05795 PF01544 CorA-like Mg2+ transporter protein CPF11_RS05805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPF11_RS05805 PF07497 Rho termination factor, RNA-binding domain CPF11_RS05805 PF07498 Rho termination factor, N-terminal domain CPF11_RS05815 PF01475 Ferric uptake regulator family CPF11_RS05825 PF00795 Carbon-nitrogen hydrolase CPF11_RS05830 PF01381 Helix-turn-helix CPF11_RS05840 PF02091 Glycyl-tRNA synthetase alpha subunit CPF11_RS05845 PF05746 DALR anticodon binding domain CPF11_RS05845 PF02092 Glycyl-tRNA synthetase beta subunit CPF11_RS05850 PF00892 EamA-like transporter family CPF11_RS05865 PF01808 AICARFT/IMPCHase bienzyme CPF11_RS05865 PF02142 MGS-like domain CPF11_RS05870 PF02390 Putative methyltransferase CPF11_RS05875 PF00438 S-adenosylmethionine synthetase, N-terminal domain CPF11_RS05875 PF02772 S-adenosylmethionine synthetase, central domain CPF11_RS05875 PF02773 S-adenosylmethionine synthetase, C-terminal domain CPF11_RS05885 PF01113 Dihydrodipicolinate reductase, N-terminus CPF11_RS05885 PF05173 Dihydrodipicolinate reductase, C-terminus CPF11_RS05890 PF01556 DnaJ C terminal domain CPF11_RS05890 PF00684 DnaJ central domain CPF11_RS05890 PF00226 DnaJ domain CPF11_RS05895 PF00012 Hsp70 protein CPF11_RS05900 PF01025 GrpE CPF11_RS05905 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS05905 PF00072 Response regulator receiver domain CPF11_RS05910 PF13756 Stimulus-sensing domain CPF11_RS05910 PF13755 Sensor N-terminal transmembrane domain CPF11_RS05910 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS05910 PF00672 HAMP domain CPF11_RS05920 PF03668 P-loop ATPase protein family CPF11_RS05925 PF02622 Uncharacterized ACR, COG1678 CPF11_RS05930 PF03976 Polyphosphate kinase 2 (PPK2) CPF11_RS05940 PF07724 AAA domain (Cdc48 subfamily) CPF11_RS05940 PF02861 Clp amino terminal domain, pathogenicity island component CPF11_RS05940 PF17871 AAA lid domain CPF11_RS05940 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS05940 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_RS05945 PF02617 ATP-dependent Clp protease adaptor protein ClpS CPF11_RS05950 PF07943 Penicillin-binding protein 5, C-terminal domain CPF11_RS05950 PF00768 D-alanyl-D-alanine carboxypeptidase CPF11_RS05955 PF00557 Metallopeptidase family M24 CPF11_RS05965 PF12544 Lysine-2,3-aminomutase CPF11_RS05965 PF04055 Radical SAM superfamily CPF11_RS05970 PF00152 tRNA synthetases class II (D, K and N) CPF11_RS05990 PF02581 Thiamine monophosphate synthase CPF11_RS05995 PF01791 DeoC/LacD family aldolase CPF11_RS06020 PF01812 5-formyltetrahydrofolate cyclo-ligase family CPF11_RS06025 PF13277 YmdB-like protein CPF11_RS06030 PF13344 Haloacid dehalogenase-like hydrolase CPF11_RS06030 PF00293 NUDIX domain CPF11_RS06040 PF01180 Dihydroorotate dehydrogenase CPF11_RS06050 PF00817 impB/mucB/samB family CPF11_RS06050 PF11799 impB/mucB/samB family C-terminal domain CPF11_RS06055 PF00324 Amino acid permease CPF11_RS06065 PF00535 Glycosyl transferase family 2 CPF11_RS06085 PF05193 Peptidase M16 inactive domain CPF11_RS06085 PF00675 Insulinase (Peptidase family M16) CPF11_RS06095 PF02151 UvrB/uvrC motif CPF11_RS06095 PF00271 Helicase conserved C-terminal domain CPF11_RS06095 PF04851 Type III restriction enzyme, res subunit CPF11_RS06095 PF12344 Ultra-violet resistance protein B CPF11_RS06095 PF17757 UvrB interaction domain CPF11_RS06105 PF00248 Aldo/keto reductase family CPF11_RS06120 PF02600 Disulfide bond formation protein DsbB CPF11_RS06125 PF00982 Glycosyltransferase family 20 CPF11_RS06130 PF02358 Trehalose-phosphatase CPF11_RS06155 PF02867 Ribonucleotide reductase, barrel domain CPF11_RS06155 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CPF11_RS06170 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CPF11_RS06170 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CPF11_RS06185 PF01161 Phosphatidylethanolamine-binding protein CPF11_RS06195 PF02547 Queuosine biosynthesis protein CPF11_RS06200 PF01702 Queuine tRNA-ribosyltransferase CPF11_RS06205 PF08331 Domain of unknown function (DUF1730) CPF11_RS06215 PF00226 DnaJ domain CPF11_RS06215 PF05099 Tellurite resistance protein TerB CPF11_RS06230 PF13302 Acetyltransferase (GNAT) domain CPF11_RS06235 PF00005 ABC transporter CPF11_RS06235 PF12848 ABC transporter CPF11_RS06245 PF00719 Inorganic pyrophosphatase CPF11_RS06255 PF04264 YceI-like domain CPF11_RS06265 PF02627 Carboxymuconolactone decarboxylase family CPF11_RS06270 PF00578 AhpC/TSA family CPF11_RS06275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS06275 PF03466 LysR substrate binding domain CPF11_RS06280 PF00444 Ribosomal protein L36 CPF11_RS06290 PF02153 Prephenate dehydrogenase CPF11_RS06300 PF01370 NAD dependent epimerase/dehydratase family CPF11_RS06320 PF01593 Flavin containing amine oxidoreductase CPF11_RS06325 PF13243 Squalene-hopene cyclase C-terminal domain CPF11_RS06325 PF13249 Squalene-hopene cyclase N-terminal domain CPF11_RS06340 PF02321 Outer membrane efflux protein CPF11_RS06345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPF11_RS06345 PF00529 HlyD membrane-fusion protein of T1SS CPF11_RS06370 PF08402 TOBE domain CPF11_RS06370 PF00005 ABC transporter CPF11_RS06385 PF03692 Putative zinc- or iron-chelating domain CPF11_RS06435 PF02796 Helix-turn-helix domain of resolvase CPF11_RS06435 PF00239 Resolvase, N terminal domain CPF11_RS06455 PF01048 Phosphorylase superfamily CPF11_RS06510 PF02796 Helix-turn-helix domain of resolvase CPF11_RS06510 PF00239 Resolvase, N terminal domain CPF11_RS06550 PF00005 ABC transporter CPF11_RS06550 PF08402 TOBE domain CPF11_RS06555 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPF11_RS06555 PF00005 ABC transporter CPF11_RS06575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS06575 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS06575 PF18415 Histidine kinase receptor ArcB trans-membrane domain CPF11_RS06575 PF01627 Hpt domain CPF11_RS06575 PF00989 PAS fold CPF11_RS06575 PF00072 Response regulator receiver domain CPF11_RS06580 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS06580 PF00072 Response regulator receiver domain CPF11_RS06585 PF00795 Carbon-nitrogen hydrolase CPF11_RS06605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_RS06615 PF07660 Secretin and TonB N terminus short domain CPF11_RS06615 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS06615 PF00593 TonB dependent receptor CPF11_RS06625 PF00313 'Cold-shock' DNA-binding domain CPF11_RS06630 PF02321 Outer membrane efflux protein CPF11_RS06635 PF00873 AcrB/AcrD/AcrF family CPF11_RS06645 PF00529 HlyD membrane-fusion protein of T1SS CPF11_RS06645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPF11_RS06650 PF00324 Amino acid permease CPF11_RS06655 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CPF11_RS06660 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CPF11_RS06665 PF02311 AraC-like ligand binding domain CPF11_RS06665 PF12833 Helix-turn-helix domain CPF11_RS06685 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS06690 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS06695 PF00005 ABC transporter CPF11_RS06695 PF12857 TOBE-like domain CPF11_RS06695 PF17850 CysA C-terminal regulatory domain CPF11_RS06700 PF00324 Amino acid permease CPF11_RS06715 PF00294 pfkB family carbohydrate kinase CPF11_RS06720 PF01612 3'-5' exonuclease CPF11_RS06720 PF00570 HRDC domain CPF11_RS06725 PF14489 QueF-like protein CPF11_RS06730 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CPF11_RS06735 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPF11_RS06735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPF11_RS06740 PF00231 ATP synthase CPF11_RS06745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CPF11_RS06745 PF02874 ATP synthase alpha/beta family, beta-barrel domain CPF11_RS06745 PF00306 ATP synthase alpha/beta chain, C terminal domain CPF11_RS06750 PF00213 ATP synthase delta (OSCP) subunit CPF11_RS06775 PF02357 Transcription termination factor nusG CPF11_RS06775 PF00467 KOW motif CPF11_RS06780 PF03949 Malic enzyme, NAD binding domain CPF11_RS06780 PF00390 Malic enzyme, N-terminal domain CPF11_RS06785 PF00326 Prolyl oligopeptidase family CPF11_RS06790 PF09335 SNARE associated Golgi protein CPF11_RS06810 PF00175 Oxidoreductase NAD-binding domain CPF11_RS06810 PF00970 Oxidoreductase FAD-binding domain CPF11_RS06815 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS06815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CPF11_RS06820 PF01979 Amidohydrolase family CPF11_RS06830 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CPF11_RS06835 PF02719 Polysaccharide biosynthesis protein CPF11_RS06840 PF00953 Glycosyl transferase family 4 CPF11_RS06855 PF00883 Cytosol aminopeptidase family, catalytic domain CPF11_RS06855 PF02789 Cytosol aminopeptidase family, N-terminal domain CPF11_RS06865 PF00037 4Fe-4S binding domain CPF11_RS06865 PF11953 Domain of unknown function (DUF3470) CPF11_RS06870 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CPF11_RS06875 PF00510 Cytochrome c oxidase subunit III CPF11_RS06880 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPF11_RS06885 PF06481 COX Aromatic Rich Motif CPF11_RS06885 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CPF11_RS06895 PF01027 Inhibitor of apoptosis-promoting Bax1 CPF11_RS06905 PF13360 PQQ-like domain CPF11_RS06905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_RS06910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_RS06910 PF00034 Cytochrome c CPF11_RS06915 PF03167 Uracil DNA glycosylase superfamily CPF11_RS06920 PF13660 Domain of unknown function (DUF4147) CPF11_RS06920 PF05161 MOFRL family CPF11_RS06925 PF04632 Fusaric acid resistance protein family CPF11_RS06930 PF00156 Phosphoribosyl transferase domain CPF11_RS06935 PF13188 PAS domain CPF11_RS06935 PF00072 Response regulator receiver domain CPF11_RS06935 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS06935 PF08448 PAS fold CPF11_RS06940 PF07690 Major Facilitator Superfamily CPF11_RS06950 PF02628 Cytochrome oxidase assembly protein CPF11_RS06955 PF00682 HMGL-like CPF11_RS06955 PF08502 LeuA allosteric (dimerisation) domain CPF11_RS06975 PF00905 Penicillin binding protein transpeptidase domain CPF11_RS06975 PF03717 Penicillin-binding Protein dimerisation domain CPF11_RS06980 PF01098 Cell cycle protein CPF11_RS06990 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS06995 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS07000 PF01618 MotA/TolQ/ExbB proton channel family CPF11_RS07015 PF00905 Penicillin binding protein transpeptidase domain CPF11_RS07015 PF00912 Transglycosylase CPF11_RS07015 PF17092 Penicillin-binding protein OB-like domain CPF11_RS07020 PF01628 HrcA protein C terminal domain CPF11_RS07025 PF03725 3' exoribonuclease family, domain 2 CPF11_RS07025 PF01138 3' exoribonuclease family, domain 1 CPF11_RS07030 PF01725 Ham1 family CPF11_RS07045 PF00575 S1 RNA binding domain CPF11_RS07050 PF02224 Cytidylate kinase CPF11_RS07055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CPF11_RS07065 PF02152 Dihydroneopterin aldolase CPF11_RS07075 PF13662 Toprim domain CPF11_RS07075 PF02132 RecR protein CPF11_RS07080 PF02575 YbaB/EbfC DNA-binding family CPF11_RS07085 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CPF11_RS07085 PF12170 DNA polymerase III tau subunit V interacting with alpha CPF11_RS07085 PF12169 DNA polymerase III subunits gamma and tau domain III CPF11_RS07100 PF07690 Major Facilitator Superfamily CPF11_RS07105 PF01979 Amidohydrolase family CPF11_RS07110 PF13632 Glycosyl transferase family group 2 CPF11_RS07115 PF04349 Periplasmic glucan biosynthesis protein, MdoG CPF11_RS07120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS07120 PF03459 TOBE domain CPF11_RS07130 PF00154 recA bacterial DNA recombination protein CPF11_RS07140 PF13462 Thioredoxin CPF11_RS07145 PF00155 Aminotransferase class I and II CPF11_RS07155 PF02779 Transketolase, pyrimidine binding domain CPF11_RS07155 PF02780 Transketolase, C-terminal domain CPF11_RS07155 PF00456 Transketolase, thiamine diphosphate binding domain CPF11_RS07160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CPF11_RS07160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPF11_RS07165 PF00162 Phosphoglycerate kinase CPF11_RS07170 PF00892 EamA-like transporter family CPF11_RS07180 PF13085 2Fe-2S iron-sulfur cluster binding domain CPF11_RS07185 PF00890 FAD binding domain CPF11_RS07185 PF02910 Fumarate reductase flavoprotein C-term CPF11_RS07190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CPF11_RS07195 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CPF11_RS07200 PF02774 Semialdehyde dehydrogenase, dimerisation domain CPF11_RS07200 PF01118 Semialdehyde dehydrogenase, NAD binding domain CPF11_RS07205 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CPF11_RS07205 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CPF11_RS07205 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CPF11_RS07210 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CPF11_RS07215 PF02233 NAD(P) transhydrogenase beta subunit CPF11_RS07220 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS07220 PF00107 Zinc-binding dehydrogenase CPF11_RS07225 PF00171 Aldehyde dehydrogenase family CPF11_RS07230 PF00266 Aminotransferase class-V CPF11_RS07245 PF13742 OB-fold nucleic acid binding domain CPF11_RS07245 PF02601 Exonuclease VII, large subunit CPF11_RS07250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPF11_RS07250 PF02843 Phosphoribosylglycinamide synthetase, C domain CPF11_RS07250 PF02844 Phosphoribosylglycinamide synthetase, N domain CPF11_RS07255 PF00583 Acetyltransferase (GNAT) family CPF11_RS07265 PF00881 Nitroreductase family CPF11_RS07290 PF17760 UvrA interaction domain CPF11_RS07290 PF17755 UvrA DNA-binding domain CPF11_RS07290 PF00005 ABC transporter CPF11_RS07295 PF00085 Thioredoxin CPF11_RS07300 PF05362 Lon protease (S16) C-terminal proteolytic domain CPF11_RS07300 PF02190 ATP-dependent protease La (LON) substrate-binding domain CPF11_RS07300 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS07305 PF03966 Trm112p-like protein CPF11_RS07315 PF07690 Major Facilitator Superfamily CPF11_RS07325 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CPF11_RS07330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPF11_RS07330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPF11_RS07330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPF11_RS07330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPF11_RS07340 PF02545 Maf-like protein CPF11_RS07345 PF01208 Uroporphyrinogen decarboxylase (URO-D) CPF11_RS07355 PF03653 Uncharacterised protein family (UPF0093) CPF11_RS07365 PF07690 Major Facilitator Superfamily CPF11_RS07370 PF03641 Possible lysine decarboxylase CPF11_RS07390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CPF11_RS07390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CPF11_RS07395 PF10396 GTP-binding protein TrmE N-terminus CPF11_RS07395 PF12631 MnmE helical domain CPF11_RS07395 PF01926 50S ribosome-binding GTPase CPF11_RS07400 PF13932 GidA associated domain CPF11_RS07400 PF01134 Glucose inhibited division protein A CPF11_RS07405 PF02527 rRNA small subunit methyltransferase G CPF11_RS07410 PF13614 AAA domain CPF11_RS07415 PF02195 ParB-like nuclease domain CPF11_RS07415 PF17762 HTH domain found in ParB protein CPF11_RS07425 PF00239 Resolvase, N terminal domain CPF11_RS07425 PF02796 Helix-turn-helix domain of resolvase CPF11_RS07505 PF13811 Domain of unknown function (DUF4186) CPF11_RS07510 PF01494 FAD binding domain CPF11_RS07515 PF00881 Nitroreductase family CPF11_RS07520 PF01230 HIT domain CPF11_RS07525 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CPF11_RS07530 PF00977 Histidine biosynthesis protein CPF11_RS07535 PF00977 Histidine biosynthesis protein CPF11_RS07540 PF00117 Glutamine amidotransferase class-I CPF11_RS07545 PF00475 Imidazoleglycerol-phosphate dehydratase CPF11_RS07550 PF02540 NAD synthase CPF11_RS07550 PF00795 Carbon-nitrogen hydrolase CPF11_RS07560 PF00535 Glycosyl transferase family 2 CPF11_RS07580 PF00216 Bacterial DNA-binding protein CPF11_RS07600 PF03807 NADP oxidoreductase coenzyme F420-dependent CPF11_RS07600 PF14748 Pyrroline-5-carboxylate reductase dimerisation CPF11_RS07615 PF00684 DnaJ central domain CPF11_RS07615 PF00226 DnaJ domain CPF11_RS07615 PF01556 DnaJ C terminal domain CPF11_RS07640 PF01960 ArgJ family CPF11_RS07650 PF07517 SecA DEAD-like domain CPF11_RS07650 PF02810 SEC-C motif CPF11_RS07650 PF01043 SecA preprotein cross-linking domain CPF11_RS07650 PF07516 SecA Wing and Scaffold domain CPF11_RS07655 PF01709 Transcriptional regulator CPF11_RS07660 PF02075 Crossover junction endodeoxyribonuclease RuvC CPF11_RS07665 PF07499 RuvA, C-terminal domain CPF11_RS07665 PF01330 RuvA N terminal domain CPF11_RS07670 PF05496 Holliday junction DNA helicase RuvB P-loop domain CPF11_RS07670 PF05491 RuvB C-terminal winged helix domain CPF11_RS07670 PF17864 RuvB AAA lid domain CPF11_RS07675 PF03061 Thioesterase superfamily CPF11_RS07680 PF01618 MotA/TolQ/ExbB proton channel family CPF11_RS07685 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS07695 PF07676 WD40-like Beta Propeller Repeat CPF11_RS07695 PF04052 TolB amino-terminal domain CPF11_RS07700 PF00691 OmpA family CPF11_RS07710 PF01171 PP-loop family CPF11_RS07715 PF01434 Peptidase family M41 CPF11_RS07715 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS07715 PF06480 FtsH Extracellular CPF11_RS07715 PF17862 AAA+ lid domain CPF11_RS07720 PF00809 Pterin binding enzyme CPF11_RS07725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CPF11_RS07725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CPF11_RS07725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CPF11_RS07725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CPF11_RS07730 PF00072 Response regulator receiver domain CPF11_RS07730 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS07735 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPF11_RS07740 PF12705 PD-(D/E)XK nuclease superfamily CPF11_RS07745 PF12705 PD-(D/E)XK nuclease superfamily CPF11_RS07745 PF13361 UvrD-like helicase C-terminal domain CPF11_RS07745 PF00580 UvrD/REP helicase N-terminal domain CPF11_RS07750 PF00085 Thioredoxin CPF11_RS07755 PF17848 Acetyl-coA carboxylase zinc finger domain CPF11_RS07755 PF01039 Carboxyl transferase domain CPF11_RS07760 PF02875 Mur ligase family, glutamate ligase domain CPF11_RS07760 PF08245 Mur ligase middle domain CPF11_RS07770 PF09190 DALR domain CPF11_RS07770 PF01406 tRNA synthetases class I (C) catalytic domain CPF11_RS07780 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CPF11_RS07785 PF00266 Aminotransferase class-V CPF11_RS07790 PF00266 Aminotransferase class-V CPF11_RS07795 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_RS07810 PF13439 Glycosyltransferase Family 4 CPF11_RS07810 PF00534 Glycosyl transferases group 1 CPF11_RS07815 PF00849 RNA pseudouridylate synthase CPF11_RS07815 PF01479 S4 domain CPF11_RS07820 PF17854 FtsK alpha domain CPF11_RS07820 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CPF11_RS07820 PF09397 Ftsk gamma domain CPF11_RS07820 PF01580 FtsK/SpoIIIE family CPF11_RS07825 PF00535 Glycosyl transferase family 2 CPF11_RS07830 PF04321 RmlD substrate binding domain CPF11_RS07835 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CPF11_RS07840 PF00483 Nucleotidyl transferase CPF11_RS07845 PF16363 GDP-mannose 4,6 dehydratase CPF11_RS07855 PF00300 Histidine phosphatase superfamily (branch 1) CPF11_RS07860 PF01523 Putative modulator of DNA gyrase CPF11_RS07865 PF00579 tRNA synthetases class I (W and Y) CPF11_RS07885 PF01258 Prokaryotic dksA/traR C4-type zinc finger CPF11_RS07895 PF00436 Single-strand binding protein family CPF11_RS07905 PF00849 RNA pseudouridylate synthase CPF11_RS07905 PF01479 S4 domain CPF11_RS07910 PF07722 Peptidase C26 CPF11_RS07915 PF14437 MafB19-like deaminase CPF11_RS07920 PF13180 PDZ domain CPF11_RS07925 PF13545 Crp-like helix-turn-helix domain CPF11_RS07925 PF00027 Cyclic nucleotide-binding domain CPF11_RS07935 PF04055 Radical SAM superfamily CPF11_RS07950 PF01012 Electron transfer flavoprotein domain CPF11_RS07955 PF01012 Electron transfer flavoprotein domain CPF11_RS07955 PF00766 Electron transfer flavoprotein FAD-binding domain CPF11_RS07965 PF02321 Outer membrane efflux protein CPF11_RS08010 PF00133 tRNA synthetases class I (I, L, M and V) CPF11_RS08010 PF08264 Anticodon-binding domain of tRNA CPF11_RS08010 PF13603 Leucyl-tRNA synthetase, Domain 2 CPF11_RS08015 PF12100 Domain of unknown function (DUF3576) CPF11_RS08035 PF14815 NUDIX domain CPF11_RS08035 PF00730 HhH-GPD superfamily base excision DNA repair protein CPF11_RS08040 PF00762 Ferrochelatase CPF11_RS08045 PF00730 HhH-GPD superfamily base excision DNA repair protein CPF11_RS08045 PF00633 Helix-hairpin-helix motif CPF11_RS08045 PF10576 Iron-sulfur binding domain of endonuclease III CPF11_RS08050 PF00005 ABC transporter CPF11_RS08050 PF00664 ABC transporter transmembrane region CPF11_RS08060 PF02934 GatB/GatE catalytic domain CPF11_RS08060 PF02637 GatB domain CPF11_RS08065 PF01425 Amidase CPF11_RS08070 PF02686 Glu-tRNAGln amidotransferase C subunit CPF11_RS08075 PF03652 Holliday junction resolvase CPF11_RS08085 PF00202 Aminotransferase class-III CPF11_RS08095 PF04966 Carbohydrate-selective porin, OprB family CPF11_RS08110 PF04966 Carbohydrate-selective porin, OprB family CPF11_RS08115 PF10634 Fe2+ transport protein CPF11_RS08120 PF03239 Iron permease FTR1 family CPF11_RS08135 PF01964 Radical SAM ThiC family CPF11_RS08135 PF13667 ThiC-associated domain CPF11_RS08140 PF00083 Sugar (and other) transporter CPF11_RS08145 PF02785 Biotin carboxylase C-terminal domain CPF11_RS08145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CPF11_RS08145 PF00289 Biotin carboxylase, N-terminal domain CPF11_RS08150 PF00364 Biotin-requiring enzyme CPF11_RS08155 PF01220 Dehydroquinase class II CPF11_RS08160 PF05036 Sporulation related domain CPF11_RS08160 PF03330 Lytic transglycolase CPF11_RS08165 PF03631 Virulence factor BrkB CPF11_RS08170 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CPF11_RS08170 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CPF11_RS08180 PF03379 CcmB protein CPF11_RS08185 PF00005 ABC transporter CPF11_RS08190 PF00694 Aconitase C-terminal domain CPF11_RS08190 PF00330 Aconitase family (aconitate hydratase) CPF11_RS08195 PF00005 ABC transporter CPF11_RS08200 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS08205 PF03466 LysR substrate binding domain CPF11_RS08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS08215 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS08215 PF07724 AAA domain (Cdc48 subfamily) CPF11_RS08215 PF17871 AAA lid domain CPF11_RS08215 PF02861 Clp amino terminal domain, pathogenicity island component CPF11_RS08215 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_RS08225 PF02576 RimP N-terminal domain CPF11_RS08225 PF17384 RimP C-terminal SH3 domain CPF11_RS08230 PF08529 NusA N-terminal domain CPF11_RS08230 PF00575 S1 RNA binding domain CPF11_RS08230 PF13184 NusA-like KH domain CPF11_RS08240 PF04760 Translation initiation factor IF-2, N-terminal region CPF11_RS08240 PF08364 Bacterial translation initiation factor IF-2 associated region CPF11_RS08240 PF11987 Translation-initiation factor 2 CPF11_RS08240 PF00009 Elongation factor Tu GTP binding domain CPF11_RS08245 PF02033 Ribosome-binding factor A CPF11_RS08250 PF01037 Lrp/AsnC ligand binding domain CPF11_RS08255 PF00842 Alanine racemase, C-terminal domain CPF11_RS08255 PF01168 Alanine racemase, N-terminal domain CPF11_RS08260 PF01266 FAD dependent oxidoreductase CPF11_RS08270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPF11_RS08275 PF05683 Fumarase C-terminus CPF11_RS08275 PF05681 Fumarate hydratase (Fumerase) CPF11_RS08290 PF02511 Thymidylate synthase complementing protein CPF11_RS08305 PF10609 NUBPL iron-transfer P-loop NTPase CPF11_RS08320 PF13180 PDZ domain CPF11_RS08330 PF00107 Zinc-binding dehydrogenase CPF11_RS08330 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS08340 PF00920 Dehydratase family CPF11_RS08345 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS08350 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS08355 PF00005 ABC transporter CPF11_RS08360 PF01895 PhoU domain CPF11_RS08375 PF00572 Ribosomal protein L13 CPF11_RS08380 PF00380 Ribosomal protein S9/S16 CPF11_RS08395 PF00271 Helicase conserved C-terminal domain CPF11_RS08395 PF03880 DbpA RNA binding domain CPF11_RS08395 PF00270 DEAD/DEAH box helicase CPF11_RS08405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CPF11_RS08410 PF01678 Diaminopimelate epimerase CPF11_RS08415 PF00919 Uncharacterized protein family UPF0004 CPF11_RS08415 PF04055 Radical SAM superfamily CPF11_RS08420 PF02881 SRP54-type protein, helical bundle domain CPF11_RS08420 PF00448 SRP54-type protein, GTPase domain CPF11_RS08430 PF00119 ATP synthase A chain CPF11_RS08435 PF00137 ATP synthase subunit C CPF11_RS08440 PF00430 ATP synthase B/B' CF(0) CPF11_RS08445 PF00430 ATP synthase B/B' CF(0) CPF11_RS08450 PF00535 Glycosyl transferase family 2 CPF11_RS08455 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CPF11_RS08465 PF04403 Paraquat-inducible protein A CPF11_RS08470 PF02470 MlaD protein CPF11_RS08480 PF13537 Glutamine amidotransferase domain CPF11_RS08480 PF00156 Phosphoribosyl transferase domain CPF11_RS08495 PF02965 Vitamin B12 dependent methionine synthase, activation domain CPF11_RS08495 PF02607 B12 binding domain CPF11_RS08495 PF02310 B12 binding domain CPF11_RS08495 PF02574 Homocysteine S-methyltransferase CPF11_RS08495 PF00809 Pterin binding enzyme CPF11_RS08505 PF00005 ABC transporter CPF11_RS08505 PF00664 ABC transporter transmembrane region CPF11_RS08505 PF03412 Peptidase C39 family CPF11_RS08540 PF02470 MlaD protein CPF11_RS08545 PF00005 ABC transporter CPF11_RS08550 PF02405 Permease MlaE CPF11_RS08555 PF01509 TruB family pseudouridylate synthase (N terminal domain) CPF11_RS08555 PF16198 tRNA pseudouridylate synthase B C-terminal domain CPF11_RS08560 PF00312 Ribosomal protein S15 CPF11_RS08565 PF00013 KH domain CPF11_RS08565 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CPF11_RS08565 PF00575 S1 RNA binding domain CPF11_RS08565 PF01138 3' exoribonuclease family, domain 1 CPF11_RS08565 PF03725 3' exoribonuclease family, domain 2 CPF11_RS08580 PF03989 DNA gyrase C-terminal domain, beta-propeller CPF11_RS08580 PF00521 DNA gyrase/topoisomerase IV, subunit A CPF11_RS08585 PF01467 Cytidylyltransferase-like CPF11_RS08590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CPF11_RS08600 PF03466 LysR substrate binding domain CPF11_RS08600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS08610 PF02675 S-adenosylmethionine decarboxylase CPF11_RS08615 PF17284 Spermidine synthase tetramerisation domain CPF11_RS08620 PF08669 Glycine cleavage T-protein C-terminal barrel domain CPF11_RS08620 PF01571 Aminomethyltransferase folate-binding domain CPF11_RS08625 PF01597 Glycine cleavage H-protein CPF11_RS08630 PF02347 Glycine cleavage system P-protein CPF11_RS08650 PF02625 XdhC and CoxI family CPF11_RS08650 PF13478 XdhC Rossmann domain CPF11_RS08660 PF00753 Metallo-beta-lactamase superfamily CPF11_RS08670 PF01370 NAD dependent epimerase/dehydratase family CPF11_RS08715 PF00593 TonB dependent receptor CPF11_RS08715 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS08745 PF00589 Phage integrase family CPF11_RS08755 PF12802 MarR family CPF11_RS08760 PF01494 FAD binding domain CPF11_RS08765 PF00111 2Fe-2S iron-sulfur cluster binding domain CPF11_RS08765 PF01799 [2Fe-2S] binding domain CPF11_RS08770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_RS08770 PF00034 Cytochrome c CPF11_RS08770 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CPF11_RS08780 PF00857 Isochorismatase family CPF11_RS08785 PF00561 alpha/beta hydrolase fold CPF11_RS08790 PF17645 Arylmalonate decarboxylase CPF11_RS08795 PF07690 Major Facilitator Superfamily CPF11_RS08805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS08805 PF03466 LysR substrate binding domain CPF11_RS08815 PF13533 Biotin-lipoyl like CPF11_RS08820 PF02321 Outer membrane efflux protein CPF11_RS08830 PF03960 ArsC family CPF11_RS08840 PF01925 Sulfite exporter TauE/SafE CPF11_RS08845 PF00753 Metallo-beta-lactamase superfamily CPF11_RS08850 PF10417 C-terminal domain of 1-Cys peroxiredoxin CPF11_RS08850 PF00578 AhpC/TSA family CPF11_RS08860 PF03352 Methyladenine glycosylase CPF11_RS08870 PF03960 ArsC family CPF11_RS08875 PF00210 Ferritin-like domain CPF11_RS08895 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_RS08895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_RS08895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_RS08900 PF03824 High-affinity nickel-transport protein CPF11_RS08905 PF01774 UreD urease accessory protein CPF11_RS08910 PF00547 Urease, gamma subunit CPF11_RS08915 PF00699 Urease beta subunit CPF11_RS08920 PF00449 Urease alpha-subunit, N-terminal domain CPF11_RS08920 PF01979 Amidohydrolase family CPF11_RS08925 PF02814 UreE urease accessory protein, N-terminal domain CPF11_RS08925 PF05194 UreE urease accessory protein, C-terminal domain CPF11_RS08930 PF01730 UreF CPF11_RS08935 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_RS08950 PF00072 Response regulator receiver domain CPF11_RS08950 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS08955 PF18415 Histidine kinase receptor ArcB trans-membrane domain CPF11_RS08955 PF01627 Hpt domain CPF11_RS08955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS08955 PF00072 Response regulator receiver domain CPF11_RS08955 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS08955 PF00989 PAS fold CPF11_RS08965 PF02653 Branched-chain amino acid transport system / permease component CPF11_RS08975 PF00005 ABC transporter CPF11_RS08975 PF12399 Branched-chain amino acid ATP-binding cassette transporter CPF11_RS08980 PF00005 ABC transporter CPF11_RS08995 PF07690 Major Facilitator Superfamily CPF11_RS09005 PF03466 LysR substrate binding domain CPF11_RS09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS09030 PF06969 HemN C-terminal domain CPF11_RS09030 PF04055 Radical SAM superfamily CPF11_RS09035 PF02705 K+ potassium transporter CPF11_RS09040 PF01168 Alanine racemase, N-terminal domain CPF11_RS09045 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS09045 PF00107 Zinc-binding dehydrogenase CPF11_RS09050 PF00654 Voltage gated chloride channel CPF11_RS09075 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CPF11_RS09080 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CPF11_RS09090 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CPF11_RS09090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CPF11_RS09095 PF00923 Transaldolase/Fructose-6-phosphate aldolase CPF11_RS09100 PF00456 Transketolase, thiamine diphosphate binding domain CPF11_RS09100 PF02779 Transketolase, pyrimidine binding domain CPF11_RS09100 PF02780 Transketolase, C-terminal domain CPF11_RS09110 PF00155 Aminotransferase class I and II CPF11_RS09125 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CPF11_RS09130 PF00005 ABC transporter CPF11_RS09150 PF02578 Multi-copper polyphenol oxidoreductase laccase CPF11_RS09160 PF01790 Prolipoprotein diacylglyceryl transferase CPF11_RS09165 PF01370 NAD dependent epimerase/dehydratase family CPF11_RS09175 PF02652 L-lactate permease CPF11_RS09180 PF01464 Transglycosylase SLT domain CPF11_RS09180 PF01551 Peptidase family M23 CPF11_RS09180 PF10145 Phage-related minor tail protein CPF11_RS09185 PF00083 Sugar (and other) transporter CPF11_RS09255 PF00239 Resolvase, N terminal domain CPF11_RS09255 PF02796 Helix-turn-helix domain of resolvase CPF11_RS09270 PF00117 Glutamine amidotransferase class-I CPF11_RS09270 PF02540 NAD synthase CPF11_RS09270 PF00958 GMP synthase C terminal domain CPF11_RS09275 PF00571 CBS domain CPF11_RS09275 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_RS09290 PF01008 Initiation factor 2 subunit family CPF11_RS09305 PF01475 Ferric uptake regulator family CPF11_RS09315 PF00005 ABC transporter CPF11_RS09320 PF00950 ABC 3 transport family CPF11_RS09325 PF01613 Flavin reductase like domain CPF11_RS09330 PF00378 Enoyl-CoA hydratase/isomerase CPF11_RS09335 PF01184 GPR1/FUN34/yaaH family CPF11_RS09340 PF04632 Fusaric acid resistance protein family CPF11_RS09355 PF07683 Cobalamin synthesis protein cobW C-terminal domain CPF11_RS09355 PF02492 CobW/HypB/UreG, nucleotide-binding domain CPF11_RS09360 PF02514 CobN/Magnesium Chelatase CPF11_RS09365 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_RS09365 PF07685 CobB/CobQ-like glutamine amidotransferase domain CPF11_RS09375 PF12557 Cob(I)alamin adenosyltransferase N terminal CPF11_RS09375 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CPF11_RS09380 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_RS09380 PF07685 CobB/CobQ-like glutamine amidotransferase domain CPF11_RS09385 PF00881 Nitroreductase family CPF11_RS09390 PF03186 CobD/Cbib protein CPF11_RS09395 PF00155 Aminotransferase class I and II CPF11_RS09400 PF02654 Cobalamin-5-phosphate synthase CPF11_RS09405 PF02277 Phosphoribosyltransferase CPF11_RS09410 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CPF11_RS09415 PF07690 Major Facilitator Superfamily CPF11_RS09420 PF00171 Aldehyde dehydrogenase family CPF11_RS09425 PF00034 Cytochrome c CPF11_RS09425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CPF11_RS09430 PF00732 GMC oxidoreductase CPF11_RS09430 PF05199 GMC oxidoreductase CPF11_RS09450 PF00375 Sodium:dicarboxylate symporter family CPF11_RS09455 PF00355 Rieske [2Fe-2S] domain CPF11_RS09470 PF02472 Biopolymer transport protein ExbD/TolR CPF11_RS09475 PF01618 MotA/TolQ/ExbB proton channel family CPF11_RS09485 PF02796 Helix-turn-helix domain of resolvase CPF11_RS09485 PF00239 Resolvase, N terminal domain CPF11_RS09500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_RS09540 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPF11_RS09545 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CPF11_RS09580 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CPF11_RS09580 PF11867 Domain of unknown function (DUF3387) CPF11_RS09580 PF18766 SWI2/SNF2 ATPase CPF11_RS09585 PF01420 Type I restriction modification DNA specificity domain CPF11_RS09590 PF01909 Nucleotidyltransferase domain CPF11_RS09600 PF02384 N-6 DNA Methylase CPF11_RS09605 PF03432 Relaxase/Mobilisation nuclease domain CPF11_RS09620 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CPF11_RS09630 PF00583 Acetyltransferase (GNAT) family CPF11_RS09665 PF13286 Phosphohydrolase-associated domain CPF11_RS09665 PF01966 HD domain CPF11_RS09675 PF01367 5'-3' exonuclease, C-terminal SAM fold CPF11_RS09675 PF09281 Taq polymerase, exonuclease CPF11_RS09675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPF11_RS09675 PF00476 DNA polymerase family A CPF11_RS09695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_RS09695 PF14824 Sirohaem biosynthesis protein central CPF11_RS09695 PF10414 Sirohaem synthase dimerisation region CPF11_RS09700 PF01565 FAD binding domain CPF11_RS09700 PF02913 FAD linked oxidases, C-terminal domain CPF11_RS09705 PF03180 NLPA lipoprotein CPF11_RS09710 PF09383 NIL domain CPF11_RS09710 PF00005 ABC transporter CPF11_RS09715 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS09720 PF00042 Globin CPF11_RS09720 PF00175 Oxidoreductase NAD-binding domain CPF11_RS09720 PF00970 Oxidoreductase FAD-binding domain CPF11_RS09725 PF01381 Helix-turn-helix CPF11_RS09730 PF00144 Beta-lactamase CPF11_RS09735 PF13532 2OG-Fe(II) oxygenase superfamily CPF11_RS09745 PF00474 Sodium:solute symporter family CPF11_RS09760 PF03702 Anhydro-N-acetylmuramic acid kinase CPF11_RS09770 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CPF11_RS09775 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CPF11_RS09785 PF02556 Preprotein translocase subunit SecB CPF11_RS09795 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CPF11_RS09800 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CPF11_RS09825 PF00324 Amino acid permease CPF11_RS09830 PF04454 Encapsulating protein for peroxidase CPF11_RS09840 PF01654 Cytochrome bd terminal oxidase subunit I CPF11_RS09845 PF02322 Cytochrome bd terminal oxidase subunit II CPF11_RS09860 PF00083 Sugar (and other) transporter CPF11_RS09860 PF08946 Osmosensory transporter coiled coil CPF11_RS09875 PF01612 3'-5' exonuclease CPF11_RS09875 PF01367 5'-3' exonuclease, C-terminal SAM fold CPF11_RS09875 PF00476 DNA polymerase family A CPF11_RS09875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CPF11_RS09880 PF01063 Amino-transferase class IV CPF11_RS09885 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CPF11_RS09890 PF00005 ABC transporter CPF11_RS09895 PF01032 FecCD transport family CPF11_RS09900 PF00849 RNA pseudouridylate synthase CPF11_RS09905 PF00140 Sigma-70 factor, region 1.2 CPF11_RS09905 PF04542 Sigma-70 region 2 CPF11_RS09905 PF04545 Sigma-70, region 4 CPF11_RS09910 PF17768 RecJ OB domain CPF11_RS09910 PF02272 DHHA1 domain CPF11_RS09910 PF01368 DHH family CPF11_RS09915 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CPF11_RS09920 PF03447 Homoserine dehydrogenase, NAD binding domain CPF11_RS09920 PF01842 ACT domain CPF11_RS09920 PF00742 Homoserine dehydrogenase CPF11_RS09925 PF00155 Aminotransferase class I and II CPF11_RS09935 PF00574 Clp protease CPF11_RS09945 PF04055 Radical SAM superfamily CPF11_RS09945 PF13186 Iron-sulfur cluster-binding domain CPF11_RS09950 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CPF11_RS09955 PF03070 TENA/THI-4/PQQC family CPF11_RS09960 PF12706 Beta-lactamase superfamily domain CPF11_RS09965 PF08042 PqqA family CPF11_RS09985 PF03372 Endonuclease/Exonuclease/phosphatase family CPF11_RS09990 PF01521 Iron-sulphur cluster biosynthesis CPF11_RS09995 PF01966 HD domain CPF11_RS09995 PF13286 Phosphohydrolase-associated domain CPF11_RS10000 PF03485 Arginyl tRNA synthetase N terminal domain CPF11_RS10000 PF05746 DALR anticodon binding domain CPF11_RS10000 PF00750 tRNA synthetases class I (R) CPF11_RS10010 PF02616 Segregation and condensation protein ScpA CPF11_RS10015 PF04079 Segregation and condensation complex subunit ScpB CPF11_RS10020 PF02416 mttA/Hcf106 family CPF11_RS10025 PF00902 Sec-independent protein translocase protein (TatC) CPF11_RS10030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_RS10030 PF02403 Seryl-tRNA synthetase N-terminal domain CPF11_RS10035 PF00893 Small Multidrug Resistance protein CPF11_RS10040 PF11412 Disulphide bond corrector protein DsbC CPF11_RS10040 PF02683 Cytochrome C biogenesis protein transmembrane region CPF11_RS10040 PF13098 Thioredoxin-like domain CPF11_RS10065 PF04632 Fusaric acid resistance protein family CPF11_RS10070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS10070 PF03466 LysR substrate binding domain CPF11_RS10130 PF01425 Amidase CPF11_RS10140 PF03466 LysR substrate binding domain CPF11_RS10140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS10145 PF02678 Pirin CPF11_RS10145 PF05726 Pirin C-terminal cupin domain CPF11_RS10150 PF03358 NADPH-dependent FMN reductase CPF11_RS10160 PF07690 Major Facilitator Superfamily CPF11_RS10165 PF00171 Aldehyde dehydrogenase family CPF11_RS10175 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS10180 PF16925 Tetracyclin repressor-like, C-terminal domain CPF11_RS10180 PF00440 Bacterial regulatory proteins, tetR family CPF11_RS10190 PF02445 Quinolinate synthetase A protein CPF11_RS10195 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CPF11_RS10195 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CPF11_RS10205 PF14403 Circularly permuted ATP-grasp type 2 CPF11_RS10215 PF15887 Putative zinc-binding metallo-peptidase CPF11_RS10215 PF10005 zinc-ribbon domain CPF11_RS10220 PF09330 D-lactate dehydrogenase, membrane binding CPF11_RS10220 PF01565 FAD binding domain CPF11_RS10225 PF00171 Aldehyde dehydrogenase family CPF11_RS10250 PF03884 DNA gyrase inhibitor YacG CPF11_RS10260 PF02545 Maf-like protein CPF11_RS10265 PF01176 Translation initiation factor 1A / IF-1 CPF11_RS10270 PF00815 Histidinol dehydrogenase CPF11_RS10275 PF01634 ATP phosphoribosyltransferase CPF11_RS10280 PF00575 S1 RNA binding domain CPF11_RS10280 PF10150 Ribonuclease E/G family CPF11_RS10280 PF12111 Polyribonucleotide phosphorylase C terminal CPF11_RS10285 PF01520 N-acetylmuramoyl-L-alanine amidase CPF11_RS10305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS10305 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPF11_RS10310 PF01645 Conserved region in glutamate synthase CPF11_RS10310 PF00310 Glutamine amidotransferases class-II CPF11_RS10310 PF04898 Glutamate synthase central domain CPF11_RS10310 PF01493 GXGXG motif CPF11_RS10320 PF03109 ABC1 family CPF11_RS10330 PF02401 LytB protein CPF11_RS10335 PF01636 Phosphotransferase enzyme family CPF11_RS10340 PF00075 RNase H CPF11_RS10355 PF01513 ATP-NAD kinase CPF11_RS10375 PF02824 TGS domain CPF11_RS10375 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CPF11_RS10375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_RS10375 PF03129 Anticodon binding domain CPF11_RS10380 PF00707 Translation initiation factor IF-3, C-terminal domain CPF11_RS10380 PF05198 Translation initiation factor IF-3, N-terminal domain CPF11_RS10390 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS10395 PF00072 Response regulator receiver domain CPF11_RS10395 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS10405 PF00005 ABC transporter CPF11_RS10405 PF12848 ABC transporter CPF11_RS10410 PF00334 Nucleoside diphosphate kinase CPF11_RS10415 PF02310 B12 binding domain CPF11_RS10415 PF04055 Radical SAM superfamily CPF11_RS10440 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPF11_RS10445 PF00155 Aminotransferase class I and II CPF11_RS10450 PF00155 Aminotransferase class I and II CPF11_RS10465 PF01042 Endoribonuclease L-PSP CPF11_RS10470 PF02569 Pantoate-beta-alanine ligase CPF11_RS10475 PF14579 Helix-hairpin-helix motif CPF11_RS10475 PF02811 PHP domain CPF11_RS10475 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPF11_RS10475 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPF11_RS10480 PF00425 chorismate binding enzyme CPF11_RS10480 PF04715 Anthranilate synthase component I, N terminal region CPF11_RS10485 PF01063 Amino-transferase class IV CPF11_RS10500 PF00355 Rieske [2Fe-2S] domain CPF11_RS10505 PF00318 Ribosomal protein S2 CPF11_RS10510 PF00889 Elongation factor TS CPF11_RS10515 PF11967 Recombination protein O N terminal CPF11_RS10515 PF02565 Recombination protein O C terminal CPF11_RS10520 PF00521 DNA gyrase/topoisomerase IV, subunit A CPF11_RS10520 PF03989 DNA gyrase C-terminal domain, beta-propeller CPF11_RS10525 PF04377 Arginine-tRNA-protein transferase, C terminus CPF11_RS10525 PF04376 Arginine-tRNA-protein transferase, N terminus CPF11_RS10530 PF00490 Delta-aminolevulinic acid dehydratase CPF11_RS10535 PF13520 Amino acid permease CPF11_RS10540 PF00464 Serine hydroxymethyltransferase CPF11_RS10560 PF00271 Helicase conserved C-terminal domain CPF11_RS10560 PF00270 DEAD/DEAH box helicase CPF11_RS10585 PF00205 Thiamine pyrophosphate enzyme, central domain CPF11_RS10585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CPF11_RS10585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_RS10590 PF10369 Small subunit of acetolactate synthase CPF11_RS10595 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CPF11_RS10595 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CPF11_RS10600 PF05275 Copper resistance protein B precursor (CopB) CPF11_RS10605 PF07732 Multicopper oxidase CPF11_RS10605 PF00394 Multicopper oxidase CPF11_RS10605 PF07731 Multicopper oxidase CPF11_RS10615 PF00403 Heavy-metal-associated domain CPF11_RS10625 PF00857 Isochorismatase family CPF11_RS10630 PF00749 tRNA synthetases class I (E and Q), catalytic domain CPF11_RS10645 PF01474 Class-II DAHP synthetase family CPF11_RS10655 PF01205 Uncharacterized protein family UPF0029 CPF11_RS10665 PF03618 Kinase/pyrophosphorylase CPF11_RS10670 PF00391 PEP-utilising enzyme, mobile domain CPF11_RS10670 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CPF11_RS10670 PF02896 PEP-utilising enzyme, TIM barrel domain CPF11_RS10675 PF12826 Helix-hairpin-helix motif CPF11_RS10675 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CPF11_RS10675 PF03120 NAD-dependent DNA ligase OB-fold domain CPF11_RS10675 PF00533 BRCA1 C Terminus (BRCT) domain CPF11_RS10675 PF01653 NAD-dependent DNA ligase adenylation domain CPF11_RS10680 PF02463 RecF/RecN/SMC N terminal domain CPF11_RS10685 PF13525 Outer membrane lipoprotein CPF11_RS10690 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CPF11_RS10695 PF00091 Tubulin/FtsZ family, GTPase domain CPF11_RS10695 PF12327 FtsZ family, C-terminal domain CPF11_RS10700 PF02491 SHS2 domain inserted in FTSA CPF11_RS10705 PF03799 Cell division protein FtsQ CPF11_RS10705 PF08478 POTRA domain, FtsQ-type CPF11_RS10710 PF07478 D-ala D-ala ligase C-terminus CPF11_RS10710 PF01820 D-ala D-ala ligase N-terminus CPF11_RS10715 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CPF11_RS10715 PF01565 FAD binding domain CPF11_RS10720 PF02875 Mur ligase family, glutamate ligase domain CPF11_RS10720 PF08245 Mur ligase middle domain CPF11_RS10720 PF01225 Mur ligase family, catalytic domain CPF11_RS10725 PF04101 Glycosyltransferase family 28 C-terminal domain CPF11_RS10725 PF03033 Glycosyltransferase family 28 N-terminal domain CPF11_RS10730 PF01098 Cell cycle protein CPF11_RS10735 PF08245 Mur ligase middle domain CPF11_RS10735 PF02875 Mur ligase family, glutamate ligase domain CPF11_RS10740 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CPF11_RS10740 PF00953 Glycosyl transferase family 4 CPF11_RS10745 PF02875 Mur ligase family, glutamate ligase domain CPF11_RS10745 PF01225 Mur ligase family, catalytic domain CPF11_RS10745 PF08245 Mur ligase middle domain CPF11_RS10750 PF08245 Mur ligase middle domain CPF11_RS10750 PF02875 Mur ligase family, glutamate ligase domain CPF11_RS10750 PF01225 Mur ligase family, catalytic domain CPF11_RS10755 PF03717 Penicillin-binding Protein dimerisation domain CPF11_RS10755 PF00905 Penicillin binding protein transpeptidase domain CPF11_RS10765 PF01795 MraW methylase family CPF11_RS10770 PF02381 MraZ protein, putative antitoxin-like CPF11_RS10780 PF07859 alpha/beta hydrolase fold CPF11_RS10790 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CPF11_RS10790 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CPF11_RS10795 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CPF11_RS10805 PF01472 PUA domain CPF11_RS10805 PF00696 Amino acid kinase family CPF11_RS10810 PF01926 50S ribosome-binding GTPase CPF11_RS10810 PF01018 GTP1/OBG CPF11_RS10815 PF01016 Ribosomal L27 protein CPF11_RS10820 PF00829 Ribosomal prokaryotic L21 protein CPF11_RS10850 PF00665 Integrase core domain CPF11_RS10850 PF13936 Helix-turn-helix domain CPF11_RS10925 PF01757 Acyltransferase family CPF11_RS10930 PF13005 zinc-finger binding domain of transposase IS66 CPF11_RS10930 PF13007 Transposase C of IS166 homeodomain CPF11_RS10930 PF13817 IS66 C-terminal element CPF11_RS10930 PF03050 Transposase IS66 family CPF11_RS10940 PF01527 Transposase CPF11_RS10975 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system CPF11_RS10990 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CPF11_RS11005 PF02371 Transposase IS116/IS110/IS902 family CPF11_RS11005 PF01548 Transposase CPF11_RS11010 PF01527 Transposase CPF11_RS11030 PF02796 Helix-turn-helix domain of resolvase CPF11_RS11030 PF00239 Resolvase, N terminal domain CPF11_RS11060 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CPF11_RS11070 PF07859 alpha/beta hydrolase fold CPF11_RS11085 PF00860 Permease family CPF11_RS11100 PF03358 NADPH-dependent FMN reductase CPF11_RS11105 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CPF11_RS11105 PF00355 Rieske [2Fe-2S] domain CPF11_RS11110 PF02167 Cytochrome C1 family CPF11_RS11110 PF00032 Cytochrome b(C-terminal)/b6/petD CPF11_RS11110 PF00033 Cytochrome b/b6/petB CPF11_RS11115 PF00033 Cytochrome b/b6/petB CPF11_RS11115 PF02167 Cytochrome C1 family CPF11_RS11115 PF00032 Cytochrome b(C-terminal)/b6/petD CPF11_RS11120 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CPF11_RS11120 PF01872 RibD C-terminal domain CPF11_RS11125 PF00677 Lumazine binding domain CPF11_RS11130 PF00925 GTP cyclohydrolase II CPF11_RS11130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CPF11_RS11135 PF00885 6,7-dimethyl-8-ribityllumazine synthase CPF11_RS11165 PF13533 Biotin-lipoyl like CPF11_RS11195 PF00994 Probable molybdopterin binding domain CPF11_RS11205 PF01227 GTP cyclohydrolase I CPF11_RS11210 PF04379 ApaG domain CPF11_RS11215 PF01053 Cys/Met metabolism PLP-dependent enzyme CPF11_RS11220 PF00483 Nucleotidyl transferase CPF11_RS11220 PF01050 Mannose-6-phosphate isomerase CPF11_RS11225 PF00293 NUDIX domain CPF11_RS11230 PF00355 Rieske [2Fe-2S] domain CPF11_RS11240 PF02699 Preprotein translocase subunit CPF11_RS11245 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CPF11_RS11245 PF18074 Primosomal protein N C-terminal domain CPF11_RS11245 PF00270 DEAD/DEAH box helicase CPF11_RS11245 PF17764 3′ DNA-binding domain (3′BD) CPF11_RS11250 PF02899 Phage integrase, N-terminal SAM-like domain CPF11_RS11250 PF00589 Phage integrase family CPF11_RS11255 PF00561 alpha/beta hydrolase fold CPF11_RS11270 PF00909 Ammonium Transporter Family CPF11_RS11330 PF00118 TCP-1/cpn60 chaperonin family CPF11_RS11335 PF00166 Chaperonin 10 Kd subunit CPF11_RS11340 PF01738 Dienelactone hydrolase family CPF11_RS11345 PF00313 'Cold-shock' DNA-binding domain CPF11_RS11350 PF13307 Helicase C-terminal domain CPF11_RS11350 PF04851 Type III restriction enzyme, res subunit CPF11_RS11355 PF00459 Inositol monophosphatase family CPF11_RS11360 PF01132 Elongation factor P (EF-P) OB domain CPF11_RS11360 PF08207 Elongation factor P (EF-P) KOW-like domain CPF11_RS11360 PF09285 Elongation factor P, C-terminal CPF11_RS11370 PF16363 GDP-mannose 4,6 dehydratase CPF11_RS11375 PF09335 SNARE associated Golgi protein CPF11_RS11380 PF01494 FAD binding domain CPF11_RS11385 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_RS11385 PF06426 Serine acetyltransferase, N-terminal CPF11_RS11390 PF00543 Nitrogen regulatory protein P-II CPF11_RS11395 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CPF11_RS11395 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CPF11_RS11395 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CPF11_RS11420 PF00156 Phosphoribosyl transferase domain CPF11_RS11500 PF03275 UDP-galactopyranose mutase CPF11_RS11520 PF00535 Glycosyl transferase family 2 CPF11_RS11525 PF02542 YgbB family CPF11_RS11525 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CPF11_RS11530 PF01207 Dihydrouridine synthase (Dus) CPF11_RS11535 PF00989 PAS fold CPF11_RS11535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS11535 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS11540 PF00072 Response regulator receiver domain CPF11_RS11540 PF00158 Sigma-54 interaction domain CPF11_RS11540 PF02954 Bacterial regulatory protein, Fis family CPF11_RS11545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS11545 PF00672 HAMP domain CPF11_RS11550 PF02954 Bacterial regulatory protein, Fis family CPF11_RS11550 PF00158 Sigma-54 interaction domain CPF11_RS11550 PF00072 Response regulator receiver domain CPF11_RS11555 PF17209 Hfq protein CPF11_RS11560 PF01926 50S ribosome-binding GTPase CPF11_RS11560 PF16360 GTP-binding GTPase Middle Region CPF11_RS11560 PF13167 GTP-binding GTPase N-terminal CPF11_RS11565 PF00293 NUDIX domain CPF11_RS11570 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS11570 PF07724 AAA domain (Cdc48 subfamily) CPF11_RS11570 PF17871 AAA lid domain CPF11_RS11570 PF02861 Clp amino terminal domain, pathogenicity island component CPF11_RS11570 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_RS11575 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CPF11_RS11575 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CPF11_RS11595 PF01794 Ferric reductase like transmembrane component CPF11_RS11600 PF00916 Sulfate permease family CPF11_RS11600 PF01740 STAS domain CPF11_RS11605 PF02684 Lipid-A-disaccharide synthetase CPF11_RS11610 PF01502 Phosphoribosyl-AMP cyclohydrolase CPF11_RS11620 PF00733 Asparagine synthase CPF11_RS11620 PF13537 Glutamine amidotransferase domain CPF11_RS11625 PF13439 Glycosyltransferase Family 4 CPF11_RS11625 PF00534 Glycosyl transferases group 1 CPF11_RS11645 PF13360 PQQ-like domain CPF11_RS11650 PF01926 50S ribosome-binding GTPase CPF11_RS11650 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CPF11_RS11655 PF07690 Major Facilitator Superfamily CPF11_RS11660 PF04107 Glutamate-cysteine ligase family 2(GCS2) CPF11_RS11665 PF04452 RNA methyltransferase CPF11_RS11670 PF01040 UbiA prenyltransferase family CPF11_RS11680 PF12002 MgsA AAA+ ATPase C terminal CPF11_RS11680 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS11680 PF16193 AAA C-terminal domain CPF11_RS11685 PF01479 S4 domain CPF11_RS11685 PF00849 RNA pseudouridylate synthase CPF11_RS11705 PF00448 SRP54-type protein, GTPase domain CPF11_RS11705 PF02881 SRP54-type protein, helical bundle domain CPF11_RS11705 PF02978 Signal peptide binding domain CPF11_RS11710 PF00886 Ribosomal protein S16 CPF11_RS11715 PF01782 RimM N-terminal domain CPF11_RS11720 PF01746 tRNA (Guanine-1)-methyltransferase CPF11_RS11725 PF01245 Ribosomal protein L19 CPF11_RS11730 PF00330 Aconitase family (aconitate hydratase) CPF11_RS11735 PF00694 Aconitase C-terminal domain CPF11_RS11740 PF00180 Isocitrate/isopropylmalate dehydrogenase CPF11_RS11745 PF01165 Ribosomal protein S21 CPF11_RS11750 PF01327 Polypeptide deformylase CPF11_RS11760 PF12802 MarR family CPF11_RS11765 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS11765 PF00072 Response regulator receiver domain CPF11_RS11770 PF00672 HAMP domain CPF11_RS11770 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS11785 PF01783 Ribosomal L32p protein family CPF11_RS11790 PF02504 Fatty acid synthesis protein CPF11_RS11795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CPF11_RS11795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CPF11_RS11800 PF00216 Bacterial DNA-binding protein CPF11_RS11805 PF13411 MerR HTH family regulatory protein CPF11_RS11820 PF03023 Lipid II flippase MurJ CPF11_RS11830 PF00216 Bacterial DNA-binding protein CPF11_RS11835 PF05443 ROS/MUCR transcriptional regulator protein CPF11_RS11840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS11840 PF03466 LysR substrate binding domain CPF11_RS11845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS11850 PF01037 Lrp/AsnC ligand binding domain CPF11_RS11855 PF00535 Glycosyl transferase family 2 CPF11_RS11865 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CPF11_RS11865 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CPF11_RS11875 PF01209 ubiE/COQ5 methyltransferase family CPF11_RS11880 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPF11_RS11885 PF01040 UbiA prenyltransferase family CPF11_RS11900 PF01523 Putative modulator of DNA gyrase CPF11_RS11905 PF05193 Peptidase M16 inactive domain CPF11_RS11905 PF00675 Insulinase (Peptidase family M16) CPF11_RS11910 PF14821 Threonine synthase N terminus CPF11_RS11910 PF00291 Pyridoxal-phosphate dependent enzyme CPF11_RS11920 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CPF11_RS11930 PF00488 MutS domain V CPF11_RS11930 PF05190 MutS family domain IV CPF11_RS11930 PF05192 MutS domain III CPF11_RS11930 PF05188 MutS domain II CPF11_RS11930 PF01624 MutS domain I CPF11_RS11935 PF08335 GlnD PII-uridylyltransferase CPF11_RS11935 PF01966 HD domain CPF11_RS11945 PF00005 ABC transporter CPF11_RS11945 PF00664 ABC transporter transmembrane region CPF11_RS11955 PF00830 Ribosomal L28 family CPF11_RS11960 PF03144 Elongation factor Tu domain 2 CPF11_RS11960 PF14492 Elongation Factor G, domain II CPF11_RS11960 PF00009 Elongation factor Tu GTP binding domain CPF11_RS11960 PF00679 Elongation factor G C-terminus CPF11_RS11960 PF03764 Elongation factor G, domain IV CPF11_RS11970 PF00311 Phosphoenolpyruvate carboxylase CPF11_RS11975 PF04286 Protein of unknown function (DUF445) CPF11_RS11985 PF01458 Uncharacterized protein family (UPF0051) CPF11_RS11990 PF00005 ABC transporter CPF11_RS11995 PF01458 Uncharacterized protein family (UPF0051) CPF11_RS12000 PF00266 Aminotransferase class-V CPF11_RS12010 PF01883 Iron-sulfur cluster assembly protein CPF11_RS12015 PF01521 Iron-sulphur cluster biosynthesis CPF11_RS12020 PF05958 tRNA (Uracil-5-)-methyltransferase CPF11_RS12025 PF00270 DEAD/DEAH box helicase CPF11_RS12025 PF00271 Helicase conserved C-terminal domain CPF11_RS12035 PF03853 YjeF-related protein N-terminus CPF11_RS12035 PF01256 Carbohydrate kinase CPF11_RS12045 PF05697 Bacterial trigger factor protein (TF) CPF11_RS12045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPF11_RS12045 PF05698 Bacterial trigger factor protein (TF) C-terminus CPF11_RS12050 PF00574 Clp protease CPF11_RS12055 PF07724 AAA domain (Cdc48 subfamily) CPF11_RS12055 PF10431 C-terminal, D2-small domain, of ClpB protein CPF11_RS12055 PF06689 ClpX C4-type zinc finger CPF11_RS12060 PF05362 Lon protease (S16) C-terminal proteolytic domain CPF11_RS12060 PF00004 ATPase family associated with various cellular activities (AAA) CPF11_RS12060 PF02190 ATP-dependent protease La (LON) substrate-binding domain CPF11_RS12065 PF00216 Bacterial DNA-binding protein CPF11_RS12075 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CPF11_RS12080 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CPF11_RS12085 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CPF11_RS12090 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CPF11_RS12100 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CPF11_RS12100 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CPF11_RS12100 PF10531 SLBB domain CPF11_RS12105 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CPF11_RS12105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CPF11_RS12105 PF00384 Molybdopterin oxidoreductase CPF11_RS12110 PF00146 NADH dehydrogenase CPF11_RS12115 PF12838 4Fe-4S dicluster domain CPF11_RS12120 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CPF11_RS12125 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CPF11_RS12130 PF00361 Proton-conducting membrane transporter CPF11_RS12130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CPF11_RS12135 PF00361 Proton-conducting membrane transporter CPF11_RS12140 PF02237 Biotin protein ligase C terminal domain CPF11_RS12140 PF03099 Biotin/lipoate A/B protein ligase family CPF11_RS12145 PF03309 Type III pantothenate kinase CPF11_RS12150 PF17770 Ribonuclease J C-terminal domain CPF11_RS12150 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CPF11_RS12150 PF12706 Beta-lactamase superfamily domain CPF11_RS12155 PF03129 Anticodon binding domain CPF11_RS12155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CPF11_RS12160 PF12704 MacB-like periplasmic core domain CPF11_RS12160 PF02687 FtsX-like permease family CPF11_RS12165 PF00005 ABC transporter CPF11_RS12170 PF00255 Glutathione peroxidase CPF11_RS12185 PF01380 SIS domain CPF11_RS12190 PF12804 MobA-like NTP transferase domain CPF11_RS12190 PF14602 Hexapeptide repeat of succinyl-transferase CPF11_RS12190 PF00132 Bacterial transferase hexapeptide (six repeats) CPF11_RS12195 PF13419 Haloacid dehalogenase-like hydrolase CPF11_RS12220 PF00149 Calcineurin-like phosphoesterase CPF11_RS12235 PF00155 Aminotransferase class I and II CPF11_RS12245 PF00501 AMP-binding enzyme CPF11_RS12300 PF00106 short chain dehydrogenase CPF11_RS12305 PF04237 YjbR CPF11_RS12315 PF07690 Major Facilitator Superfamily CPF11_RS12320 PF03466 LysR substrate binding domain CPF11_RS12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS12325 PF09278 MerR, DNA binding CPF11_RS12325 PF00376 MerR family regulatory protein CPF11_RS12335 PF00873 AcrB/AcrD/AcrF family CPF11_RS12345 PF02321 Outer membrane efflux protein CPF11_RS12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS12360 PF03466 LysR substrate binding domain CPF11_RS12365 PF02219 Methylenetetrahydrofolate reductase CPF11_RS12370 PF02677 Epoxyqueuosine reductase QueH CPF11_RS12375 PF08267 Cobalamin-independent synthase, N-terminal domain CPF11_RS12375 PF01717 Cobalamin-independent synthase, Catalytic domain CPF11_RS12405 PF18395 Cas3 C-terminal domain CPF11_RS12405 PF18019 HD domain CPF11_RS12410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_RS12425 PF07690 Major Facilitator Superfamily CPF11_RS12440 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS12440 PF00107 Zinc-binding dehydrogenase CPF11_RS12445 PF00593 TonB dependent receptor CPF11_RS12445 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS12455 PF00005 ABC transporter CPF11_RS12455 PF12848 ABC transporter CPF11_RS12470 PF02080 TrkA-C domain CPF11_RS12470 PF06826 Predicted Permease Membrane Region CPF11_RS12475 PF00155 Aminotransferase class I and II CPF11_RS12480 PF00710 Asparaginase, N-terminal CPF11_RS12480 PF17763 Glutaminase/Asparaginase C-terminal domain CPF11_RS12495 PF00593 TonB dependent receptor CPF11_RS12495 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS12500 PF13640 2OG-Fe(II) oxygenase superfamily CPF11_RS12500 PF18331 PKHD-type hydroxylase C-terminal domain CPF11_RS12505 PF00005 ABC transporter CPF11_RS12505 PF00664 ABC transporter transmembrane region CPF11_RS12510 PF00005 ABC transporter CPF11_RS12510 PF00664 ABC transporter transmembrane region CPF11_RS12515 PF01654 Cytochrome bd terminal oxidase subunit I CPF11_RS12520 PF02322 Cytochrome bd terminal oxidase subunit II CPF11_RS12530 PF07995 Glucose / Sorbosone dehydrogenase CPF11_RS12535 PF05552 Conserved TM helix CPF11_RS12535 PF00924 Mechanosensitive ion channel CPF11_RS12540 PF07715 TonB-dependent Receptor Plug Domain CPF11_RS12540 PF00593 TonB dependent receptor CPF11_RS12550 PF13282 Domain of unknown function (DUF4070) CPF11_RS12550 PF02310 B12 binding domain CPF11_RS12550 PF04055 Radical SAM superfamily CPF11_RS12560 PF03551 Transcriptional regulator PadR-like family CPF11_RS12580 PF04185 Phosphoesterase family CPF11_RS12580 PF05506 Domain of unknown function (DUF756) CPF11_RS12590 PF01569 PAP2 superfamily CPF11_RS12595 PF03060 Nitronate monooxygenase CPF11_RS12600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPF11_RS12600 PF00005 ABC transporter CPF11_RS12605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CPF11_RS12605 PF00005 ABC transporter CPF11_RS12610 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS12615 PF12911 N-terminal TM domain of oligopeptide transport permease C CPF11_RS12615 PF00528 Binding-protein-dependent transport system inner membrane component CPF11_RS12620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CPF11_RS12625 PF00478 IMP dehydrogenase / GMP reductase domain CPF11_RS12625 PF00571 CBS domain CPF11_RS12630 PF01029 NusB family CPF11_RS12630 PF01189 16S rRNA methyltransferase RsmB/F CPF11_RS12645 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS12645 PF00072 Response regulator receiver domain CPF11_RS12660 PF00579 tRNA synthetases class I (W and Y) CPF11_RS12670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CPF11_RS12670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CPF11_RS12675 PF00764 Arginosuccinate synthase CPF11_RS12680 PF04055 Radical SAM superfamily CPF11_RS12690 PF01728 FtsJ-like methyltransferase CPF11_RS12690 PF01479 S4 domain CPF11_RS12695 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CPF11_RS12695 PF02780 Transketolase, C-terminal domain CPF11_RS12695 PF02779 Transketolase, pyrimidine binding domain CPF11_RS12700 PF00348 Polyprenyl synthetase CPF11_RS12705 PF02609 Exonuclease VII small subunit CPF11_RS12710 PF01206 Sulfurtransferase TusA CPF11_RS12715 PF00480 ROK family CPF11_RS12720 PF01728 FtsJ-like methyltransferase CPF11_RS12725 PF02541 Ppx/GppA phosphatase family CPF11_RS12735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CPF11_RS12735 PF00384 Molybdopterin oxidoreductase CPF11_RS12735 PF01568 Molydopterin dinucleotide binding domain CPF11_RS12740 PF09163 Formate dehydrogenase N, transmembrane CPF11_RS12740 PF13247 4Fe-4S dicluster domain CPF11_RS12745 PF01292 Prokaryotic cytochrome b561 CPF11_RS12750 PF04216 Protein involved in formate dehydrogenase formation CPF11_RS12755 PF03453 MoeA N-terminal region (domain I and II) CPF11_RS12755 PF03454 MoeA C-terminal region (domain IV) CPF11_RS12755 PF00994 Probable molybdopterin binding domain CPF11_RS12760 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CPF11_RS12765 PF12804 MobA-like NTP transferase domain CPF11_RS12770 PF02634 FdhD/NarQ family CPF11_RS12775 PF02798 Glutathione S-transferase, N-terminal domain CPF11_RS12775 PF14497 Glutathione S-transferase, C-terminal domain CPF11_RS12780 PF02659 Putative manganese efflux pump CPF11_RS12790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS12790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CPF11_RS12795 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CPF11_RS12795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CPF11_RS12795 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CPF11_RS12795 PF10371 Domain of unknown function CPF11_RS12795 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CPF11_RS12800 PF01180 Dihydroorotate dehydrogenase CPF11_RS12805 PF01515 Phosphate acetyl/butaryl transferase CPF11_RS12810 PF00871 Acetokinase family CPF11_RS12820 PF01594 AI-2E family transporter CPF11_RS12855 PF01011 PQQ enzyme repeat CPF11_RS12865 PF06505 Activator of aromatic catabolism CPF11_RS12865 PF02954 Bacterial regulatory protein, Fis family CPF11_RS12865 PF00158 Sigma-54 interaction domain CPF11_RS12865 PF02830 V4R domain CPF11_RS12875 PF10415 Fumarase C C-terminus CPF11_RS12875 PF00206 Lyase CPF11_RS12885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CPF11_RS12890 PF02570 Precorrin-8X methylmutase CPF11_RS12895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_RS12900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_RS12905 PF02571 Precorrin-6x reductase CbiJ/CobK CPF11_RS12910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_RS12920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CPF11_RS12925 PF01888 CbiD CPF11_RS12930 PF07690 Major Facilitator Superfamily CPF11_RS12935 PF04399 Glutaredoxin 2, C terminal domain CPF11_RS12935 PF13417 Glutathione S-transferase, N-terminal domain CPF11_RS12940 PF05724 Thiopurine S-methyltransferase (TPMT) CPF11_RS12945 PF00375 Sodium:dicarboxylate symporter family CPF11_RS12950 PF17755 UvrA DNA-binding domain CPF11_RS12995 PF16295 Tetracyclin repressor-like, C-terminal domain CPF11_RS12995 PF00440 Bacterial regulatory proteins, tetR family CPF11_RS13000 PF02534 Type IV secretory system Conjugative DNA transfer CPF11_RS13010 PF05443 ROS/MUCR transcriptional regulator protein CPF11_RS13030 PF02811 PHP domain CPF11_RS13030 PF01336 OB-fold nucleic acid binding domain CPF11_RS13030 PF07733 Bacterial DNA polymerase III alpha NTPase domain CPF11_RS13030 PF14579 Helix-hairpin-helix motif CPF11_RS13030 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CPF11_RS13035 PF02798 Glutathione S-transferase, N-terminal domain CPF11_RS13045 PF03466 LysR substrate binding domain CPF11_RS13045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS13100 PF13007 Transposase C of IS166 homeodomain CPF11_RS13100 PF13005 zinc-finger binding domain of transposase IS66 CPF11_RS13100 PF13817 IS66 C-terminal element CPF11_RS13100 PF03050 Transposase IS66 family CPF11_RS13130 PF00216 Bacterial DNA-binding protein CPF11_RS13160 PF05284 Protein of unknown function (DUF736) CPF11_RS13185 PF01555 DNA methylase CPF11_RS13215 PF01464 Transglycosylase SLT domain CPF11_RS13255 PF07519 Tannase and feruloyl esterase CPF11_RS13280 PF16925 Tetracyclin repressor-like, C-terminal domain CPF11_RS13280 PF00440 Bacterial regulatory proteins, tetR family CPF11_RS13290 PF00171 Aldehyde dehydrogenase family CPF11_RS13295 PF02566 OsmC-like protein CPF11_RS13300 PF00107 Zinc-binding dehydrogenase CPF11_RS13300 PF16884 N-terminal domain of oxidoreductase CPF11_RS13305 PF00440 Bacterial regulatory proteins, tetR family CPF11_RS13310 PF00171 Aldehyde dehydrogenase family CPF11_RS13335 PF03358 NADPH-dependent FMN reductase CPF11_RS13340 PF04264 YceI-like domain CPF11_RS13350 PF00529 HlyD membrane-fusion protein of T1SS CPF11_RS13350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CPF11_RS13355 PF00873 AcrB/AcrD/AcrF family CPF11_RS13360 PF02321 Outer membrane efflux protein CPF11_RS13365 PF08361 MAATS-type transcriptional repressor, C-terminal region CPF11_RS13365 PF00440 Bacterial regulatory proteins, tetR family CPF11_RS13370 PF03466 LysR substrate binding domain CPF11_RS13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CPF11_RS13375 PF01717 Cobalamin-independent synthase, Catalytic domain CPF11_RS13375 PF08267 Cobalamin-independent synthase, N-terminal domain CPF11_RS13380 PF02371 Transposase IS116/IS110/IS902 family CPF11_RS13380 PF01548 Transposase CPF11_RS13410 PF00589 Phage integrase family CPF11_RS13410 PF02899 Phage integrase, N-terminal SAM-like domain CPF11_RS13480 PF02082 Transcriptional regulator CPF11_RS13485 PF00175 Oxidoreductase NAD-binding domain CPF11_RS13485 PF00042 Globin CPF11_RS13485 PF00970 Oxidoreductase FAD-binding domain CPF11_RS13490 PF00115 Cytochrome C and Quinol oxidase polypeptide I CPF11_RS13495 PF04343 Protein of unknown function, DUF488 CPF11_RS13525 PF13007 Transposase C of IS166 homeodomain CPF11_RS13525 PF03050 Transposase IS66 family CPF11_RS13525 PF13005 zinc-finger binding domain of transposase IS66 CPF11_RS13525 PF13817 IS66 C-terminal element CPF11_RS13535 PF01527 Transposase CPF11_RS13545 PF00999 Sodium/hydrogen exchanger family CPF11_RS13550 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CPF11_RS13555 PF04221 RelB antitoxin CPF11_RS13560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CPF11_RS13605 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPF11_RS13610 PF01850 PIN domain CPF11_RS13650 PF00873 AcrB/AcrD/AcrF family CPF11_RS13655 PF00072 Response regulator receiver domain CPF11_RS13655 PF00486 Transcriptional regulatory protein, C terminal CPF11_RS13660 PF08521 Two-component sensor kinase N-terminal CPF11_RS13660 PF00512 His Kinase A (phospho-acceptor) domain CPF11_RS13660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CPF11_RS13670 PF07690 Major Facilitator Superfamily CPF11_RS13680 PF18267 Rubredoxin NAD+ reductase C-terminal domain CPF11_RS13680 PF04324 BFD-like [2Fe-2S] binding domain CPF11_RS13680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CPF11_RS13680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CPF11_RS13680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CPF11_RS13680 PF13806 Rieske-like [2Fe-2S] domain CPF11_RS13705 PF00171 Aldehyde dehydrogenase family CPF11_RS13715 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CPF11_RS13720 PF05199 GMC oxidoreductase CPF11_RS13720 PF00732 GMC oxidoreductase CPF11_RS13725 PF01546 Peptidase family M20/M25/M40 CPF11_RS13725 PF07687 Peptidase dimerisation domain CPF11_RS13755 PF01925 Sulfite exporter TauE/SafE CPF11_RS13765 PF01527 Transposase CPF11_RS13790 PF02322 Cytochrome bd terminal oxidase subunit II CPF11_RS13795 PF01654 Cytochrome bd terminal oxidase subunit I CPF11_RS13825 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CPF11_RS13830 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CPF11_RS13875 PF00216 Bacterial DNA-binding protein CPF11_RS13945 PF04343 Protein of unknown function, DUF488 CPF11_RS13955 PF13823 Alcohol dehydrogenase GroES-associated CPF11_RS13955 PF00107 Zinc-binding dehydrogenase CPF11_RS13955 PF08240 Alcohol dehydrogenase GroES-like domain CPF11_RS13960 PF01527 Transposase CPF11_RS14005 PF00440 Bacterial regulatory proteins, tetR family CPF11_RS14005 PF16925 Tetracyclin repressor-like, C-terminal domain CPF11_RS14010 PF00465 Iron-containing alcohol dehydrogenase CPF11_RS14015 PF00171 Aldehyde dehydrogenase family CPF11_RS14040 PF01909 Nucleotidyltransferase domain CPF11_RS14050 PF02384 N-6 DNA Methylase CPF11_RS14060 PF03960 ArsC family CPF11_RS14065 PF02040 Arsenical pump membrane protein CPF11_RS14070 PF03358 NADPH-dependent FMN reductase CPF11_RS14080 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system CPF11_RS14135 PF00239 Resolvase, N terminal domain CPF11_RS14135 PF02796 Helix-turn-helix domain of resolvase CPF11_RS14175 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CPF11_RS14180 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CPF11_RS14200 PF01850 PIN domain CPF11_RS14230 PF10134 Replication initiator protein A CPF11_RS14245 PF02796 Helix-turn-helix domain of resolvase CPF11_RS14245 PF00239 Resolvase, N terminal domain CPF11_RS14250 PF00239 Resolvase, N terminal domain CPF11_RS14250 PF02796 Helix-turn-helix domain of resolvase CPF11_RS14260 PF00239 Resolvase, N terminal domain CPF11_RS14260 PF02796 Helix-turn-helix domain of resolvase