locus-tag class description NYR34_RS00005 PF00308 Bacterial dnaA protein NYR34_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix NYR34_RS00005 PF11638 DnaA N-terminal domain NYR34_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NYR34_RS00010 PF02767 DNA polymerase III beta subunit, central domain NYR34_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NYR34_RS00020 PF02463 RecF/RecN/SMC N terminal domain NYR34_RS00025 PF00204 DNA gyrase B NYR34_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus NYR34_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR34_RS00025 PF01751 Toprim domain NYR34_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A NYR34_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller NYR34_RS00040 PF00392 Bacterial regulatory proteins, gntR family NYR34_RS00045 PF00005 ABC transporter NYR34_RS00055 PF00005 ABC transporter NYR34_RS00055 PF02687 FtsX-like permease family NYR34_RS00055 PF12704 MacB-like periplasmic core domain NYR34_RS00060 PF02403 Seryl-tRNA synthetase N-terminal domain NYR34_RS00060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR34_RS00065 PF00486 Transcriptional regulatory protein, C terminal NYR34_RS00065 PF00072 Response regulator receiver domain NYR34_RS00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR34_RS00070 PF00672 HAMP domain NYR34_RS00070 PF00512 His Kinase A (phospho-acceptor) domain NYR34_RS00075 PF01230 HIT domain NYR34_RS00080 PF06130 Phosphate propanoyltransferase NYR34_RS00085 PF01966 HD domain NYR34_RS00090 PF13331 Domain of unknown function (DUF4093) NYR34_RS00090 PF13662 Toprim domain NYR34_RS00095 PF00398 Ribosomal RNA adenine dimethylase NYR34_RS00100 PF04026 SpoVG NYR34_RS00105 PF14572 Phosphoribosyl synthetase-associated domain NYR34_RS00105 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NYR34_RS00110 PF01195 Peptidyl-tRNA hydrolase NYR34_RS00115 PF17757 UvrB interaction domain NYR34_RS00115 PF03461 TRCF domain NYR34_RS00115 PF00271 Helicase conserved C-terminal domain NYR34_RS00115 PF00270 DEAD/DEAH box helicase NYR34_RS00115 PF02559 CarD-like/TRCF domain NYR34_RS00130 PF14602 Hexapeptide repeat of succinyl-transferase NYR34_RS00130 PF12464 Maltose acetyltransferase NYR34_RS00140 PF13091 PLD-like domain NYR34_RS00150 PF17841 BID domain of Bartonella effector protein (Bep) NYR34_RS00150 PF02661 Fic/DOC family NYR34_RS00165 PF02901 Pyruvate formate lyase-like NYR34_RS00165 PF01228 Glycine radical NYR34_RS00170 PF04055 Radical SAM superfamily NYR34_RS00175 PF00027 Cyclic nucleotide-binding domain NYR34_RS00175 PF13545 Crp-like helix-turn-helix domain NYR34_RS00180 PF03883 Peroxide stress protein YaaA NYR34_RS00195 PF01268 Formate--tetrahydrofolate ligase NYR34_RS00200 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NYR34_RS00200 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NYR34_RS00205 PF03009 Glycerophosphoryl diester phosphodiesterase family NYR34_RS00210 PF01797 Transposase IS200 like NYR34_RS00225 PF12733 Cadherin-like beta sandwich domain NYR34_RS00225 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) NYR34_RS00230 PF00719 Inorganic pyrophosphatase NYR34_RS00235 PF01709 Transcriptional regulator NYR34_RS00250 PF00464 Serine hydroxymethyltransferase NYR34_RS00260 PF03116 NQR2, RnfD, RnfE family NYR34_RS00275 PF02508 Rnf-Nqr subunit, membrane protein NYR34_RS00300 PF01197 Ribosomal protein L31 NYR34_RS00310 PF14319 Transposase zinc-binding domain NYR34_RS00310 PF04986 Putative transposase NYR34_RS00315 PF00265 Thymidine kinase NYR34_RS00320 PF14437 MafB19-like deaminase NYR34_RS00335 PF02780 Transketolase, C-terminal domain NYR34_RS00335 PF00456 Transketolase, thiamine diphosphate binding domain NYR34_RS00335 PF02779 Transketolase, pyrimidine binding domain NYR34_RS00340 PF01134 Glucose inhibited division protein A NYR34_RS00340 PF13932 GidA associated domain NYR34_RS00345 PF02527 rRNA small subunit methyltransferase G NYR34_RS00445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NYR34_RS00445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NYR34_RS00450 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS00465 PF00338 Ribosomal protein S10p/S20e NYR34_RS00470 PF00297 Ribosomal protein L3 NYR34_RS00475 PF00573 Ribosomal protein L4/L1 family NYR34_RS00480 PF00276 Ribosomal protein L23 NYR34_RS00485 PF03947 Ribosomal Proteins L2, C-terminal domain NYR34_RS00485 PF00181 Ribosomal Proteins L2, RNA binding domain NYR34_RS00490 PF00203 Ribosomal protein S19 NYR34_RS00495 PF00237 Ribosomal protein L22p/L17e NYR34_RS00500 PF07650 KH domain NYR34_RS00500 PF00189 Ribosomal protein S3, C-terminal domain NYR34_RS00505 PF00252 Ribosomal protein L16p/L10e NYR34_RS00510 PF00831 Ribosomal L29 protein NYR34_RS00515 PF00366 Ribosomal protein S17 NYR34_RS00520 PF00238 Ribosomal protein L14p/L23e NYR34_RS00530 PF00281 Ribosomal protein L5 NYR34_RS00530 PF00673 ribosomal L5P family C-terminus NYR34_RS00535 PF00253 Ribosomal protein S14p/S29e NYR34_RS00540 PF00410 Ribosomal protein S8 NYR34_RS00545 PF00347 Ribosomal protein L6 NYR34_RS00550 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NYR34_RS00555 PF00333 Ribosomal protein S5, N-terminal domain NYR34_RS00555 PF03719 Ribosomal protein S5, C-terminal domain NYR34_RS00560 PF00327 Ribosomal protein L30p/L7e NYR34_RS00565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NYR34_RS00570 PF00344 SecY translocase NYR34_RS00575 PF05191 Adenylate kinase, active site lid NYR34_RS00580 PF00557 Metallopeptidase family M24 NYR34_RS00585 PF01176 Translation initiation factor 1A / IF-1 NYR34_RS00590 PF00444 Ribosomal protein L36 NYR34_RS00595 PF00416 Ribosomal protein S13/S18 NYR34_RS00600 PF00411 Ribosomal protein S11 NYR34_RS00605 PF01000 RNA polymerase Rpb3/RpoA insert domain NYR34_RS00605 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NYR34_RS00605 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NYR34_RS00610 PF01196 Ribosomal protein L17 NYR34_RS00625 PF13673 Acetyltransferase (GNAT) domain NYR34_RS00625 PF13302 Acetyltransferase (GNAT) domain NYR34_RS00625 PF03352 Methyladenine glycosylase NYR34_RS00625 PF00117 Glutamine amidotransferase class-I NYR34_RS00625 PF00958 GMP synthase C terminal domain NYR34_RS00640 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS00645 PF00085 Thioredoxin NYR34_RS00650 PF00005 ABC transporter NYR34_RS00655 PF00005 ABC transporter NYR34_RS00660 PF02361 Cobalt transport protein NYR34_RS00665 PF01416 tRNA pseudouridine synthase NYR34_RS00670 PF02223 Thymidylate kinase NYR34_RS00675 PF09115 DNA polymerase III, delta subunit, C terminal NYR34_RS00680 PF05175 Methyltransferase small domain NYR34_RS00685 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NYR34_RS00695 PF01588 Putative tRNA binding domain NYR34_RS00695 PF08264 Anticodon-binding domain of tRNA NYR34_RS00695 PF09334 tRNA synthetases class I (M) NYR34_RS00700 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR34_RS00700 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR34_RS00705 PF01906 Putative heavy-metal-binding NYR34_RS00715 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS00720 PF00572 Ribosomal protein L13 NYR34_RS00725 PF00380 Ribosomal protein S9/S16 NYR34_RS00730 PF00749 tRNA synthetases class I (E and Q), catalytic domain NYR34_RS00740 PF02040 Arsenical pump membrane protein NYR34_RS00750 PF01406 tRNA synthetases class I (C) catalytic domain NYR34_RS00755 PF00636 Ribonuclease III domain NYR34_RS00765 PF00588 SpoU rRNA Methylase family NYR34_RS00765 PF08032 RNA 2'-O ribose methyltransferase substrate binding NYR34_RS00780 PF00471 Ribosomal protein L33 NYR34_RS00790 PF02357 Transcription termination factor nusG NYR34_RS00790 PF00467 KOW motif NYR34_RS00800 PF13333 Integrase core domain NYR34_RS00800 PF00665 Integrase core domain NYR34_RS00800 PF13276 HTH-like domain NYR34_RS00810 PF04231 Endonuclease I NYR34_RS00855 PF04231 Endonuclease I NYR34_RS00875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR34_RS00885 PF00298 Ribosomal protein L11, RNA binding domain NYR34_RS00885 PF03946 Ribosomal protein L11, N-terminal domain NYR34_RS00890 PF00687 Ribosomal protein L1p/L10e family NYR34_RS00895 PF00466 Ribosomal protein L10 NYR34_RS00900 PF00542 Ribosomal protein L7/L12 C-terminal domain NYR34_RS00900 PF16320 Ribosomal protein L7/L12 dimerisation domain NYR34_RS00905 PF05175 Methyltransferase small domain NYR34_RS00910 PF04563 RNA polymerase beta subunit NYR34_RS00910 PF04560 RNA polymerase Rpb2, domain 7 NYR34_RS00910 PF04565 RNA polymerase Rpb2, domain 3 NYR34_RS00910 PF04561 RNA polymerase Rpb2, domain 2 NYR34_RS00910 PF00562 RNA polymerase Rpb2, domain 6 NYR34_RS00910 PF10385 RNA polymerase beta subunit external 1 domain NYR34_RS00915 PF04997 RNA polymerase Rpb1, domain 1 NYR34_RS00915 PF00623 RNA polymerase Rpb1, domain 2 NYR34_RS00915 PF04983 RNA polymerase Rpb1, domain 3 NYR34_RS00915 PF05000 RNA polymerase Rpb1, domain 4 NYR34_RS00915 PF04998 RNA polymerase Rpb1, domain 5 NYR34_RS00930 PF00563 EAL domain NYR34_RS00930 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS00930 PF03707 Bacterial signalling protein N terminal repeat NYR34_RS00945 PF00465 Iron-containing alcohol dehydrogenase NYR34_RS00945 PF00171 Aldehyde dehydrogenase family NYR34_RS00965 PF02638 Glycosyl hydrolase-like 10 NYR34_RS00980 PF01797 Transposase IS200 like NYR34_RS00985 PF00164 Ribosomal protein S12/S23 NYR34_RS00990 PF00177 Ribosomal protein S7p/S5e NYR34_RS00995 PF00009 Elongation factor Tu GTP binding domain NYR34_RS00995 PF03144 Elongation factor Tu domain 2 NYR34_RS00995 PF14492 Elongation Factor G, domain II NYR34_RS00995 PF00679 Elongation factor G C-terminus NYR34_RS00995 PF03764 Elongation factor G, domain IV NYR34_RS01000 PF00009 Elongation factor Tu GTP binding domain NYR34_RS01000 PF03143 Elongation factor Tu C-terminal domain NYR34_RS01000 PF03144 Elongation factor Tu domain 2 NYR34_RS01005 PF01026 TatD related DNase NYR34_RS01015 PF00595 PDZ domain NYR34_RS01020 PF02464 Competence-damaged protein NYR34_RS01020 PF18146 Damage-inducible protein CinA KH domain NYR34_RS01020 PF00994 Probable molybdopterin binding domain NYR34_RS01025 PF01250 Ribosomal protein S6 NYR34_RS01030 PF00436 Single-strand binding protein family NYR34_RS01035 PF01084 Ribosomal protein S18 NYR34_RS01040 PF02272 DHHA1 domain NYR34_RS01040 PF03948 Ribosomal protein L9, C-terminal domain NYR34_RS01040 PF01281 Ribosomal protein L9, N-terminal domain NYR34_RS01040 PF01368 DHH family NYR34_RS01045 PF00772 DnaB-like helicase N terminal domain NYR34_RS01045 PF03796 DnaB-like helicase C terminal domain NYR34_RS01050 PF00210 Ferritin-like domain NYR34_RS01065 PF00472 RF-1 domain NYR34_RS01065 PF03462 PCRF domain NYR34_RS01070 PF17827 PrmC N-terminal domain NYR34_RS01070 PF13847 Methyltransferase domain NYR34_RS01075 PF01300 Telomere recombination NYR34_RS01080 PF00679 Elongation factor G C-terminus NYR34_RS01080 PF14492 Elongation Factor G, domain II NYR34_RS01080 PF00009 Elongation factor Tu GTP binding domain NYR34_RS01080 PF03144 Elongation factor Tu domain 2 NYR34_RS01085 PF02502 Ribose/Galactose Isomerase NYR34_RS01100 PF09186 Domain of unknown function (DUF1949) NYR34_RS01100 PF01205 Uncharacterized protein family UPF0029 NYR34_RS01105 PF01743 Poly A polymerase head domain NYR34_RS01105 PF12627 Probable RNA and SrmB- binding site of polymerase A NYR34_RS01105 PF13735 tRNA nucleotidyltransferase domain 2 putative NYR34_RS01110 PF01966 HD domain NYR34_RS01125 PF02590 Predicted SPOUT methyltransferase NYR34_RS01130 PF01797 Transposase IS200 like NYR34_RS01135 PF01741 Large-conductance mechanosensitive channel, MscL NYR34_RS01140 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS01145 PF18152 DAHP synthase ferredoxin-like domain NYR34_RS01145 PF00793 DAHP synthetase I family NYR34_RS01150 PF02153 Prephenate dehydrogenase NYR34_RS01155 PF01761 3-dehydroquinate synthase NYR34_RS01160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NYR34_RS01165 PF01842 ACT domain NYR34_RS01165 PF01817 Chorismate mutase type II NYR34_RS01165 PF00800 Prephenate dehydratase NYR34_RS01170 PF08501 Shikimate dehydrogenase substrate binding domain NYR34_RS01175 PF01264 Chorismate synthase NYR34_RS01180 PF06081 Aromatic acid exporter family member 1 NYR34_RS01180 PF11728 Putative aromatic acid exporter C-terminal domain NYR34_RS01185 PF00368 Hydroxymethylglutaryl-coenzyme A reductase NYR34_RS01190 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal NYR34_RS01190 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal NYR34_RS01200 PF00270 DEAD/DEAH box helicase NYR34_RS01200 PF00271 Helicase conserved C-terminal domain NYR34_RS01200 PF17191 RecG wedge domain NYR34_RS01205 PF02504 Fatty acid synthesis protein NYR34_RS01210 PF14622 Ribonuclease-III-like NYR34_RS01210 PF00035 Double-stranded RNA binding motif NYR34_RS01220 PF00730 HhH-GPD superfamily base excision DNA repair protein NYR34_RS01220 PF10576 Iron-sulfur binding domain of endonuclease III NYR34_RS01220 PF00633 Helix-hairpin-helix motif NYR34_RS01230 PF00664 ABC transporter transmembrane region NYR34_RS01230 PF00005 ABC transporter NYR34_RS01235 PF00664 ABC transporter transmembrane region NYR34_RS01235 PF00005 ABC transporter NYR34_RS01245 PF00258 Flavodoxin NYR34_RS01250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NYR34_RS01250 PF14579 Helix-hairpin-helix motif NYR34_RS01250 PF02811 PHP domain NYR34_RS01250 PF01336 OB-fold nucleic acid binding domain NYR34_RS01250 PF07733 Bacterial DNA polymerase III alpha NTPase domain NYR34_RS01255 PF02073 Thermophilic metalloprotease (M29) NYR34_RS01270 PF10282 Lactonase, 7-bladed beta-propeller NYR34_RS01275 PF00550 Phosphopantetheine attachment site NYR34_RS01280 PF13603 Leucyl-tRNA synthetase, Domain 2 NYR34_RS01280 PF08264 Anticodon-binding domain of tRNA NYR34_RS01280 PF09334 tRNA synthetases class I (M) NYR34_RS01290 PF06962 Putative rRNA methylase NYR34_RS01295 PF16199 Radical_SAM C-terminal domain NYR34_RS01295 PF04055 Radical SAM superfamily NYR34_RS01305 PF00929 Exonuclease NYR34_RS01305 PF14579 Helix-hairpin-helix motif NYR34_RS01305 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NYR34_RS01305 PF07733 Bacterial DNA polymerase III alpha NTPase domain NYR34_RS01305 PF11490 DNA polymerase III polC-type N-terminus II NYR34_RS01305 PF14480 DNA polymerase III polC-type N-terminus I NYR34_RS01305 PF02811 PHP domain NYR34_RS01315 PF01409 tRNA synthetases class II core domain (F) NYR34_RS01315 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NYR34_RS01320 PF03484 tRNA synthetase B5 domain NYR34_RS01320 PF03483 B3/4 domain NYR34_RS01320 PF01588 Putative tRNA binding domain NYR34_RS01320 PF03147 Ferredoxin-fold anticodon binding domain NYR34_RS01320 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NYR34_RS01325 PF04055 Radical SAM superfamily NYR34_RS01330 PF03193 RsgA GTPase NYR34_RS01335 PF00834 Ribulose-phosphate 3 epimerase family NYR34_RS01345 PF00830 Ribosomal L28 family NYR34_RS01350 PF13684 Dihydroxyacetone kinase family NYR34_RS01350 PF02734 DAK2 domain NYR34_RS01375 PF00933 Glycosyl hydrolase family 3 N terminal domain NYR34_RS01375 PF01915 Glycosyl hydrolase family 3 C-terminal domain NYR34_RS01380 PF13580 SIS domain NYR34_RS01390 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NYR34_RS01405 PF00480 ROK family NYR34_RS01410 PF00392 Bacterial regulatory proteins, gntR family NYR34_RS01415 PF00392 Bacterial regulatory proteins, gntR family NYR34_RS01415 PF07702 UTRA domain NYR34_RS01450 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS01455 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS01475 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS01480 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS01515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NYR34_RS01525 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase NYR34_RS01530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NYR34_RS01545 PF04167 Protein of unknown function (DUF402) NYR34_RS01550 PF04608 Phosphatidylglycerophosphatase A NYR34_RS01555 PF02146 Sir2 family NYR34_RS01575 PF08241 Methyltransferase domain NYR34_RS01585 PF00313 'Cold-shock' DNA-binding domain NYR34_RS01590 PF05860 haemagglutination activity domain NYR34_RS01590 PF02661 Fic/DOC family NYR34_RS01590 PF03543 Yersinia/Haemophilus virulence surface antigen NYR34_RS01590 PF13332 Hemagglutinin repeat NYR34_RS01590 PF13018 Extended Signal Peptide of Type V secretion system NYR34_RS01595 PF13509 S1 domain NYR34_RS01595 PF17783 CvfB-like winged helix domain NYR34_RS01600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR34_RS01600 PF09180 Prolyl-tRNA synthetase, C-terminal NYR34_RS01600 PF03129 Anticodon binding domain NYR34_RS01610 PF14492 Elongation Factor G, domain II NYR34_RS01610 PF03144 Elongation factor Tu domain 2 NYR34_RS01610 PF00679 Elongation factor G C-terminus NYR34_RS01610 PF03764 Elongation factor G, domain IV NYR34_RS01610 PF00009 Elongation factor Tu GTP binding domain NYR34_RS01620 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NYR34_RS01620 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus NYR34_RS01630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NYR34_RS01630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NYR34_RS01640 PF00625 Guanylate kinase NYR34_RS01645 PF01192 RNA polymerase Rpb6 NYR34_RS01650 PF08459 UvrC Helix-hairpin-helix N-terminal NYR34_RS01650 PF01541 GIY-YIG catalytic domain NYR34_RS01660 PF07690 Major Facilitator Superfamily NYR34_RS01670 PF12323 Helix-turn-helix domain NYR34_RS01670 PF01385 Probable transposase NYR34_RS01670 PF07282 Putative transposase DNA-binding domain NYR34_RS01675 PF17770 Ribonuclease J C-terminal domain NYR34_RS01675 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NYR34_RS01675 PF00753 Metallo-beta-lactamase superfamily NYR34_RS01685 PF01263 Aldose 1-epimerase NYR34_RS01710 PF01467 Cytidylyltransferase-like NYR34_RS01715 PF02576 RimP N-terminal domain NYR34_RS01715 PF17384 RimP C-terminal SH3 domain NYR34_RS01720 PF08529 NusA N-terminal domain NYR34_RS01720 PF00575 S1 RNA binding domain NYR34_RS01720 PF13184 NusA-like KH domain NYR34_RS01725 PF04296 Protein of unknown function (DUF448) NYR34_RS01730 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NYR34_RS01735 PF04760 Translation initiation factor IF-2, N-terminal region NYR34_RS01735 PF00009 Elongation factor Tu GTP binding domain NYR34_RS01735 PF11987 Translation-initiation factor 2 NYR34_RS01740 PF02033 Ribosome-binding factor A NYR34_RS01750 PF04397 LytTr DNA-binding domain NYR34_RS01750 PF00072 Response regulator receiver domain NYR34_RS01755 PF00271 Helicase conserved C-terminal domain NYR34_RS01755 PF17764 3′ DNA-binding domain (3′BD) NYR34_RS01755 PF18074 Primosomal protein N C-terminal domain NYR34_RS01755 PF04851 Type III restriction enzyme, res subunit NYR34_RS01755 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NYR34_RS01760 PF02911 Formyl transferase, C-terminal domain NYR34_RS01760 PF00551 Formyl transferase NYR34_RS01765 PF04608 Phosphatidylglycerophosphatase A NYR34_RS01775 PF02773 S-adenosylmethionine synthetase, C-terminal domain NYR34_RS01775 PF00438 S-adenosylmethionine synthetase, N-terminal domain NYR34_RS01775 PF02772 S-adenosylmethionine synthetase, central domain NYR34_RS01785 PF07517 SecA DEAD-like domain NYR34_RS01785 PF07516 SecA Wing and Scaffold domain NYR34_RS01785 PF01043 SecA preprotein cross-linking domain NYR34_RS01790 PF00472 RF-1 domain NYR34_RS01790 PF03462 PCRF domain NYR34_RS01795 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NYR34_RS01795 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR34_RS01800 PF02631 RecX family NYR34_RS01815 PF17854 FtsK alpha domain NYR34_RS01815 PF01580 FtsK/SpoIIIE family NYR34_RS01815 PF09397 Ftsk gamma domain NYR34_RS01820 PF01926 50S ribosome-binding GTPase NYR34_RS01825 PF01351 Ribonuclease HII NYR34_RS01830 PF01131 DNA topoisomerase NYR34_RS01830 PF01751 Toprim domain NYR34_RS01830 PF01396 Topoisomerase DNA binding C4 zinc finger NYR34_RS01835 PF12733 Cadherin-like beta sandwich domain NYR34_RS01835 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) NYR34_RS01840 PF00005 ABC transporter NYR34_RS01850 PF00005 ABC transporter NYR34_RS01860 PF01136 Peptidase family U32 NYR34_RS01860 PF16325 Peptidase family U32 C-terminal domain NYR34_RS01865 PF08534 Redoxin NYR34_RS01870 PF02881 SRP54-type protein, helical bundle domain NYR34_RS01870 PF00448 SRP54-type protein, GTPase domain NYR34_RS01875 PF04297 Putative helix-turn-helix protein, YlxM / p13 like NYR34_RS01880 PF00448 SRP54-type protein, GTPase domain NYR34_RS01880 PF02978 Signal peptide binding domain NYR34_RS01880 PF02881 SRP54-type protein, helical bundle domain NYR34_RS01885 PF01367 5'-3' exonuclease, C-terminal SAM fold NYR34_RS01885 PF00476 DNA polymerase family A NYR34_RS01885 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NYR34_RS01890 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NYR34_RS01890 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NYR34_RS01890 PF06827 Zinc finger found in FPG and IleRS NYR34_RS01900 PF07319 Primosomal protein DnaI N-terminus NYR34_RS01900 PF01695 IstB-like ATP binding protein NYR34_RS01905 PF02824 TGS domain NYR34_RS01905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR34_RS01905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NYR34_RS01905 PF03129 Anticodon binding domain NYR34_RS01910 PF00005 ABC transporter NYR34_RS01910 PF13732 Domain of unknown function (DUF4162) NYR34_RS01920 PF10609 NUBPL iron-transfer P-loop NTPase NYR34_RS01935 PF04002 RadC-like JAB domain NYR34_RS01935 PF12826 Helix-hairpin-helix motif NYR34_RS01945 PF00829 Ribosomal prokaryotic L21 protein NYR34_RS01955 PF01016 Ribosomal L27 protein NYR34_RS01960 PF09269 Domain of unknown function (DUF1967) NYR34_RS01960 PF01018 GTP1/OBG NYR34_RS01960 PF01926 50S ribosome-binding GTPase NYR34_RS01965 PF01797 Transposase IS200 like NYR34_RS01970 PF01797 Transposase IS200 like NYR34_RS02015 PF07499 RuvA, C-terminal domain NYR34_RS02015 PF01330 RuvA N terminal domain NYR34_RS02020 PF05491 RuvB C-terminal winged helix domain NYR34_RS02020 PF17864 RuvB AAA lid domain NYR34_RS02020 PF05496 Holliday junction DNA helicase RuvB P-loop domain NYR34_RS02025 PF02547 Queuosine biosynthesis protein NYR34_RS02030 PF02673 Bacitracin resistance protein BacA NYR34_RS02040 PF00381 PTS HPr component phosphorylation site NYR34_RS02050 PF02390 Putative methyltransferase NYR34_RS02055 PF05343 M42 glutamyl aminopeptidase NYR34_RS02060 PF00248 Aldo/keto reductase family NYR34_RS02065 PF00204 DNA gyrase B NYR34_RS02065 PF01751 Toprim domain NYR34_RS02065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR34_RS02065 PF00986 DNA gyrase B subunit, carboxyl terminus NYR34_RS02070 PF00521 DNA gyrase/topoisomerase IV, subunit A NYR34_RS02070 PF03989 DNA gyrase C-terminal domain, beta-propeller NYR34_RS02085 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS02105 PF02608 ABC transporter substrate-binding protein PnrA-like NYR34_RS02110 PF00005 ABC transporter NYR34_RS02115 PF02653 Branched-chain amino acid transport system / permease component NYR34_RS02120 PF02653 Branched-chain amino acid transport system / permease component NYR34_RS02125 PF01712 Deoxynucleoside kinase NYR34_RS02130 PF02347 Glycine cleavage system P-protein NYR34_RS02135 PF02347 Glycine cleavage system P-protein NYR34_RS02140 PF01597 Glycine cleavage H-protein NYR34_RS02145 PF01571 Aminomethyltransferase folate-binding domain NYR34_RS02145 PF08669 Glycine cleavage T-protein C-terminal barrel domain NYR34_RS02155 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NYR34_RS02155 PF01676 Metalloenzyme superfamily NYR34_RS02165 PF00113 Enolase, C-terminal TIM barrel domain NYR34_RS02165 PF03952 Enolase, N-terminal domain NYR34_RS02170 PF02142 MGS-like domain NYR34_RS02180 PF17876 Cold shock domain NYR34_RS02180 PF08206 Ribonuclease B OB domain NYR34_RS02180 PF00773 RNB domain NYR34_RS02180 PF00575 S1 RNA binding domain NYR34_RS02185 PF01668 SmpB protein NYR34_RS02190 PF01734 Patatin-like phospholipase NYR34_RS02195 PF01569 PAP2 superfamily NYR34_RS02235 PF00294 pfkB family carbohydrate kinase NYR34_RS02240 PF11798 IMS family HHH motif NYR34_RS02240 PF00817 impB/mucB/samB family NYR34_RS02240 PF11799 impB/mucB/samB family C-terminal domain NYR34_RS02255 PF00664 ABC transporter transmembrane region NYR34_RS02255 PF00005 ABC transporter NYR34_RS02260 PF00664 ABC transporter transmembrane region NYR34_RS02260 PF00005 ABC transporter NYR34_RS02270 PF07055 Enoyl reductase FAD binding domain NYR34_RS02270 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NYR34_RS02270 PF12241 Trans-2-enoyl-CoA reductase catalytic region NYR34_RS02275 PF02371 Transposase IS116/IS110/IS902 family NYR34_RS02275 PF01548 Transposase NYR34_RS02280 PF00011 Hsp20/alpha crystallin family NYR34_RS02285 PF01565 FAD binding domain NYR34_RS02285 PF02913 FAD linked oxidases, C-terminal domain NYR34_RS02350 PF03764 Elongation factor G, domain IV NYR34_RS02350 PF00679 Elongation factor G C-terminus NYR34_RS02350 PF14492 Elongation Factor G, domain II NYR34_RS02350 PF00009 Elongation factor Tu GTP binding domain NYR34_RS02355 PF04439 Streptomycin adenylyltransferase NYR34_RS02360 PF12161 HsdM N-terminal domain NYR34_RS02360 PF02384 N-6 DNA Methylase NYR34_RS02365 PF08274 PhnA Zinc-Ribbon NYR34_RS02365 PF03831 PhnA domain NYR34_RS02390 PF00403 Heavy-metal-associated domain NYR34_RS02395 PF00403 Heavy-metal-associated domain NYR34_RS02400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NYR34_RS02400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NYR34_RS02410 PF00270 DEAD/DEAH box helicase NYR34_RS02410 PF00271 Helicase conserved C-terminal domain NYR34_RS02430 PF05524 PEP-utilising enzyme, N-terminal NYR34_RS02430 PF00391 PEP-utilising enzyme, mobile domain NYR34_RS02430 PF02896 PEP-utilising enzyme, TIM barrel domain NYR34_RS02455 PF00271 Helicase conserved C-terminal domain NYR34_RS02455 PF00271 Helicase conserved C-terminal domain NYR34_RS02455 PF00176 SNF2 family N-terminal domain NYR34_RS02455 PF00176 SNF2 family N-terminal domain NYR34_RS02510 PF08244 Glycosyl hydrolases family 32 C terminal NYR34_RS02510 PF00251 Glycosyl hydrolases family 32 N-terminal domain NYR34_RS02520 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS02525 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS02530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR34_RS02530 PF00005 ABC transporter NYR34_RS02540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NYR34_RS02540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NYR34_RS02545 PF00356 Bacterial regulatory proteins, lacI family NYR34_RS02590 PF01938 TRAM domain NYR34_RS02590 PF05958 tRNA (Uracil-5-)-methyltransferase NYR34_RS02620 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS02630 PF12323 Helix-turn-helix domain NYR34_RS02630 PF07282 Putative transposase DNA-binding domain NYR34_RS02630 PF01385 Probable transposase NYR34_RS02645 PF00563 EAL domain NYR34_RS02645 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS02645 PF13426 PAS domain NYR34_RS02670 PF00364 Biotin-requiring enzyme NYR34_RS02675 PF00289 Biotin carboxylase, N-terminal domain NYR34_RS02675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NYR34_RS02675 PF02785 Biotin carboxylase C-terminal domain NYR34_RS02680 PF01039 Carboxyl transferase domain NYR34_RS02680 PF17848 Acetyl-coA carboxylase zinc finger domain NYR34_RS02685 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NYR34_RS02690 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NYR34_RS02690 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NYR34_RS02695 PF00698 Acyl transferase domain NYR34_RS02705 PF02801 Beta-ketoacyl synthase, C-terminal domain NYR34_RS02705 PF00109 Beta-ketoacyl synthase, N-terminal domain NYR34_RS02710 PF07977 FabA-like domain NYR34_RS02735 PF00924 Mechanosensitive ion channel NYR34_RS02745 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS02765 PF04986 Putative transposase NYR34_RS02765 PF14319 Transposase zinc-binding domain NYR34_RS02780 PF00005 ABC transporter NYR34_RS02780 PF08402 TOBE domain NYR34_RS02785 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS02790 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS02800 PF01029 NusB family NYR34_RS02805 PF13742 OB-fold nucleic acid binding domain NYR34_RS02805 PF02601 Exonuclease VII, large subunit NYR34_RS02810 PF02609 Exonuclease VII small subunit NYR34_RS02815 PF01479 S4 domain NYR34_RS02815 PF01728 FtsJ-like methyltransferase NYR34_RS02820 PF13476 AAA domain NYR34_RS02830 PF00817 impB/mucB/samB family NYR34_RS02830 PF11798 IMS family HHH motif NYR34_RS02830 PF11799 impB/mucB/samB family C-terminal domain NYR34_RS02835 PF00271 Helicase conserved C-terminal domain NYR34_RS02835 PF00270 DEAD/DEAH box helicase NYR34_RS02840 PF01261 Xylose isomerase-like TIM barrel NYR34_RS02855 PF13276 HTH-like domain NYR34_RS02855 PF00665 Integrase core domain NYR34_RS02855 PF13333 Integrase core domain NYR34_RS02860 PF02583 Metal-sensitive transcriptional repressor NYR34_RS02865 PF03485 Arginyl tRNA synthetase N terminal domain NYR34_RS02865 PF00750 tRNA synthetases class I (R) NYR34_RS02865 PF05746 DALR anticodon binding domain NYR34_RS02875 PF00534 Glycosyl transferases group 1 NYR34_RS02875 PF13439 Glycosyltransferase Family 4 NYR34_RS02890 PF01451 Low molecular weight phosphotyrosine protein phosphatase NYR34_RS02900 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NYR34_RS02900 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NYR34_RS02900 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain NYR34_RS02910 PF00588 SpoU rRNA Methylase family NYR34_RS02915 PF03006 Haemolysin-III related NYR34_RS02920 PF00871 Acetokinase family NYR34_RS02935 PF00005 ABC transporter NYR34_RS02935 PF12399 Branched-chain amino acid ATP-binding cassette transporter NYR34_RS02940 PF00005 ABC transporter NYR34_RS02950 PF00440 Bacterial regulatory proteins, tetR family NYR34_RS02955 PF02803 Thiolase, C-terminal domain NYR34_RS02955 PF00108 Thiolase, N-terminal domain NYR34_RS02965 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NYR34_RS02965 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NYR34_RS02970 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NYR34_RS02970 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NYR34_RS02975 PF00561 alpha/beta hydrolase fold NYR34_RS02980 PF12697 Alpha/beta hydrolase family NYR34_RS02985 PF01938 TRAM domain NYR34_RS02985 PF05958 tRNA (Uracil-5-)-methyltransferase NYR34_RS03005 PF13333 Integrase core domain NYR34_RS03005 PF00665 Integrase core domain NYR34_RS03005 PF13276 HTH-like domain NYR34_RS03020 PF01022 Bacterial regulatory protein, arsR family NYR34_RS03040 PF00271 Helicase conserved C-terminal domain NYR34_RS03040 PF00270 DEAD/DEAH box helicase NYR34_RS03045 PF01938 TRAM domain NYR34_RS03045 PF05958 tRNA (Uracil-5-)-methyltransferase NYR34_RS03060 PF14319 Transposase zinc-binding domain NYR34_RS03060 PF04986 Putative transposase NYR34_RS03070 PF08323 Starch synthase catalytic domain NYR34_RS03070 PF00534 Glycosyl transferases group 1 NYR34_RS03075 PF00483 Nucleotidyl transferase NYR34_RS03085 PF13195 Protein of unknown function (DUF4011) NYR34_RS03085 PF13086 AAA domain NYR34_RS03085 PF13087 AAA domain NYR34_RS03100 PF02586 SOS response associated peptidase (SRAP) NYR34_RS03115 PF00343 Carbohydrate phosphorylase NYR34_RS03120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NYR34_RS03120 PF02806 Alpha amylase, C-terminal all-beta domain NYR34_RS03120 PF00128 Alpha amylase, catalytic domain NYR34_RS03125 PF00356 Bacterial regulatory proteins, lacI family NYR34_RS03130 PF00128 Alpha amylase, catalytic domain NYR34_RS03130 PF17999 Pullulanase N1-terminal domain NYR34_RS03130 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NYR34_RS03140 PF13439 Glycosyltransferase Family 4 NYR34_RS03140 PF00534 Glycosyl transferases group 1 NYR34_RS03145 PF00248 Aldo/keto reductase family NYR34_RS03150 PF05697 Bacterial trigger factor protein (TF) NYR34_RS03150 PF05698 Bacterial trigger factor protein (TF) C-terminus NYR34_RS03150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NYR34_RS03155 PF00004 ATPase family associated with various cellular activities (AAA) NYR34_RS03155 PF05362 Lon protease (S16) C-terminal proteolytic domain NYR34_RS03155 PF02190 ATP-dependent protease La (LON) substrate-binding domain NYR34_RS03160 PF01926 50S ribosome-binding GTPase NYR34_RS03165 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS03180 PF10458 Valyl tRNA synthetase tRNA binding arm NYR34_RS03180 PF08264 Anticodon-binding domain of tRNA NYR34_RS03180 PF00133 tRNA synthetases class I (I, L, M and V) NYR34_RS03185 PF08245 Mur ligase middle domain NYR34_RS03185 PF02875 Mur ligase family, glutamate ligase domain NYR34_RS03190 PF12146 Serine aminopeptidase, S33 NYR34_RS03195 PF07690 Major Facilitator Superfamily NYR34_RS03210 PF02660 Glycerol-3-phosphate acyltransferase NYR34_RS03215 PF01628 HrcA protein C terminal domain NYR34_RS03220 PF01025 GrpE NYR34_RS03225 PF00012 Hsp70 protein NYR34_RS03230 PF01556 DnaJ C terminal domain NYR34_RS03230 PF00226 DnaJ domain NYR34_RS03230 PF00684 DnaJ central domain NYR34_RS03235 PF03099 Biotin/lipoate A/B protein ligase family NYR34_RS03235 PF10437 Bacterial lipoate protein ligase C-terminus NYR34_RS03240 PF02620 Large ribosomal RNA subunit accumulation protein YceD NYR34_RS03245 PF01783 Ribosomal L32p protein family NYR34_RS03250 PF01795 MraW methylase family NYR34_RS03265 PF01467 Cytidylyltransferase-like NYR34_RS03270 PF00795 Carbon-nitrogen hydrolase NYR34_RS03270 PF02540 NAD synthase NYR34_RS03280 PF14490 Helix-hairpin-helix containing domain NYR34_RS03280 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain NYR34_RS03280 PF13538 UvrD-like helicase C-terminal domain NYR34_RS03295 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR34_RS03300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NYR34_RS03305 PF01047 MarR family NYR34_RS03310 PF01738 Dienelactone hydrolase family NYR34_RS03330 PF02475 Met-10+ like-protein NYR34_RS03330 PF01938 TRAM domain NYR34_RS03330 PF05958 tRNA (Uracil-5-)-methyltransferase NYR34_RS03350 PF01751 Toprim domain NYR34_RS03350 PF01131 DNA topoisomerase NYR34_RS03350 PF01396 Topoisomerase DNA binding C4 zinc finger NYR34_RS03405 PF12161 HsdM N-terminal domain NYR34_RS03405 PF02384 N-6 DNA Methylase NYR34_RS03410 PF01420 Type I restriction modification DNA specificity domain NYR34_RS03415 PF18766 SWI2/SNF2 ATPase NYR34_RS03415 PF12008 Type I restriction and modification enzyme - subunit R C terminal NYR34_RS03415 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NYR34_RS03475 PF01553 Acyltransferase NYR34_RS03490 PF00005 ABC transporter NYR34_RS03500 PF07859 alpha/beta hydrolase fold NYR34_RS03505 PF00849 RNA pseudouridylate synthase NYR34_RS03505 PF01479 S4 domain NYR34_RS03510 PF00849 RNA pseudouridylate synthase NYR34_RS03510 PF01479 S4 domain NYR34_RS03515 PF01184 GPR1/FUN34/yaaH family NYR34_RS03520 PF00497 Bacterial extracellular solute-binding proteins, family 3 NYR34_RS03525 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS03530 PF00005 ABC transporter NYR34_RS03540 PF00106 short chain dehydrogenase NYR34_RS03545 PF01641 SelR domain NYR34_RS03550 PF02446 4-alpha-glucanotransferase NYR34_RS03555 PF00128 Alpha amylase, catalytic domain NYR34_RS03555 PF16657 Maltogenic Amylase, C-terminal domain NYR34_RS03560 PF16657 Maltogenic Amylase, C-terminal domain NYR34_RS03560 PF00128 Alpha amylase, catalytic domain NYR34_RS03560 PF02903 Alpha amylase, N-terminal ig-like domain NYR34_RS03565 PF00128 Alpha amylase, catalytic domain NYR34_RS03570 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS03575 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS03580 PF13416 Bacterial extracellular solute-binding protein NYR34_RS03600 PF00756 Putative esterase NYR34_RS03605 PF00128 Alpha amylase, catalytic domain NYR34_RS03605 PF03714 Bacterial pullanase-associated domain NYR34_RS03605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NYR34_RS03625 PF00128 Alpha amylase, catalytic domain NYR34_RS03640 PF00255 Glutathione peroxidase NYR34_RS03645 PF03471 Transporter associated domain NYR34_RS03645 PF01595 Cyclin M transmembrane N-terminal domain NYR34_RS03645 PF00571 CBS domain NYR34_RS03650 PF13333 Integrase core domain NYR34_RS03650 PF00665 Integrase core domain NYR34_RS03650 PF13276 HTH-like domain NYR34_RS03665 PF01966 HD domain NYR34_RS03665 PF00072 Response regulator receiver domain NYR34_RS03680 PF03144 Elongation factor Tu domain 2 NYR34_RS03680 PF06421 GTP-binding protein LepA C-terminus NYR34_RS03680 PF00679 Elongation factor G C-terminus NYR34_RS03680 PF00009 Elongation factor Tu GTP binding domain NYR34_RS03690 PF04055 Radical SAM superfamily NYR34_RS03690 PF06969 HemN C-terminal domain NYR34_RS03695 PF02899 Phage integrase, N-terminal SAM-like domain NYR34_RS03695 PF00589 Phage integrase family NYR34_RS03700 PF01676 Metalloenzyme superfamily NYR34_RS03705 PF03672 Uncharacterised protein family (UPF0154) NYR34_RS03715 PF02885 Glycosyl transferase family, helical bundle domain NYR34_RS03715 PF00591 Glycosyl transferase family, a/b domain NYR34_RS03715 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NYR34_RS03725 PF00300 Histidine phosphatase superfamily (branch 1) NYR34_RS03755 PF00186 Dihydrofolate reductase NYR34_RS03760 PF00303 Thymidylate synthase NYR34_RS03765 PF01546 Peptidase family M20/M25/M40 NYR34_RS03790 PF01048 Phosphorylase superfamily NYR34_RS03795 PF01791 DeoC/LacD family aldolase NYR34_RS03805 PF01975 Survival protein SurE NYR34_RS03810 PF00133 tRNA synthetases class I (I, L, M and V) NYR34_RS03810 PF08264 Anticodon-binding domain of tRNA NYR34_RS03815 PF04472 Cell division protein SepF NYR34_RS03820 PF01168 Alanine racemase, N-terminal domain NYR34_RS03825 PF01926 50S ribosome-binding GTPase NYR34_RS03825 PF06071 Protein of unknown function (DUF933) NYR34_RS03830 PF12327 FtsZ family, C-terminal domain NYR34_RS03830 PF00091 Tubulin/FtsZ family, GTPase domain NYR34_RS03835 PF01702 Queuine tRNA-ribosyltransferase NYR34_RS03845 PF14815 NUDIX domain NYR34_RS03845 PF00633 Helix-hairpin-helix motif NYR34_RS03845 PF00730 HhH-GPD superfamily base excision DNA repair protein NYR34_RS03850 PF00881 Nitroreductase family NYR34_RS03855 PF02687 FtsX-like permease family NYR34_RS03855 PF12704 MacB-like periplasmic core domain NYR34_RS03855 PF00005 ABC transporter NYR34_RS03860 PF00005 ABC transporter NYR34_RS03860 PF02687 FtsX-like permease family NYR34_RS03860 PF12704 MacB-like periplasmic core domain NYR34_RS03865 PF13419 Haloacid dehalogenase-like hydrolase NYR34_RS03870 PF01323 DSBA-like thioredoxin domain NYR34_RS03880 PF01432 Peptidase family M3 NYR34_RS03880 PF08439 Oligopeptidase F NYR34_RS03890 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS03905 PF01545 Cation efflux family NYR34_RS03910 PF03060 Nitronate monooxygenase NYR34_RS03915 PF01575 MaoC like domain NYR34_RS03920 PF02535 ZIP Zinc transporter NYR34_RS03930 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NYR34_RS03955 PF02583 Metal-sensitive transcriptional repressor NYR34_RS03965 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS03965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NYR34_RS03970 PF00581 Rhodanese-like domain NYR34_RS03985 PF01022 Bacterial regulatory protein, arsR family NYR34_RS03995 PF00005 ABC transporter NYR34_RS03995 PF13732 Domain of unknown function (DUF4162) NYR34_RS04010 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain NYR34_RS04020 PF00248 Aldo/keto reductase family NYR34_RS04025 PF05343 M42 glutamyl aminopeptidase NYR34_RS04045 PF00291 Pyridoxal-phosphate dependent enzyme NYR34_RS04095 PF05525 Branched-chain amino acid transport protein NYR34_RS04100 PF13276 HTH-like domain NYR34_RS04100 PF00665 Integrase core domain NYR34_RS04100 PF13333 Integrase core domain NYR34_RS04125 PF01546 Peptidase family M20/M25/M40 NYR34_RS04125 PF07687 Peptidase dimerisation domain NYR34_RS04130 PF01113 Dihydrodipicolinate reductase, N-terminus NYR34_RS04130 PF05173 Dihydrodipicolinate reductase, C-terminus NYR34_RS04135 PF00701 Dihydrodipicolinate synthetase family NYR34_RS04140 PF01118 Semialdehyde dehydrogenase, NAD binding domain NYR34_RS04140 PF02774 Semialdehyde dehydrogenase, dimerisation domain NYR34_RS04145 PF00696 Amino acid kinase family NYR34_RS04145 PF01842 ACT domain NYR34_RS04145 PF13840 ACT domain NYR34_RS04150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NYR34_RS04150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NYR34_RS04155 PF17936 Bacterial Ig domain NYR34_RS04155 PF00149 Calcineurin-like phosphoesterase NYR34_RS04155 PF02872 5'-nucleotidase, C-terminal domain NYR34_RS04160 PF00563 EAL domain NYR34_RS04160 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS04160 PF03707 Bacterial signalling protein N terminal repeat NYR34_RS04165 PF00478 IMP dehydrogenase / GMP reductase domain NYR34_RS04185 PF01070 FMN-dependent dehydrogenase NYR34_RS04190 PF08544 GHMP kinases C terminal NYR34_RS04190 PF00288 GHMP kinases N terminal domain NYR34_RS04200 PF10509 Galactokinase galactose-binding signature NYR34_RS04200 PF08544 GHMP kinases C terminal NYR34_RS04200 PF00288 GHMP kinases N terminal domain NYR34_RS04205 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NYR34_RS04210 PF04227 Indigoidine synthase A like protein NYR34_RS04215 PF00689 Cation transporting ATPase, C-terminus NYR34_RS04215 PF00690 Cation transporter/ATPase, N-terminus NYR34_RS04230 PF12323 Helix-turn-helix domain NYR34_RS04230 PF01385 Probable transposase NYR34_RS04230 PF07282 Putative transposase DNA-binding domain NYR34_RS04250 PF00575 S1 RNA binding domain NYR34_RS04250 PF03725 3' exoribonuclease family, domain 2 NYR34_RS04250 PF01138 3' exoribonuclease family, domain 1 NYR34_RS04250 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NYR34_RS04255 PF00312 Ribosomal protein S15 NYR34_RS04260 PF06153 Cyclic-di-AMP receptor NYR34_RS04265 PF01687 Riboflavin kinase NYR34_RS04265 PF06574 FAD synthetase NYR34_RS04270 PF01509 TruB family pseudouridylate synthase (N terminal domain) NYR34_RS04275 PF00085 Thioredoxin NYR34_RS04280 PF00488 MutS domain V NYR34_RS04280 PF01713 Smr domain NYR34_RS04285 PF01351 Ribonuclease HII NYR34_RS04290 PF01479 S4 domain NYR34_RS04290 PF00849 RNA pseudouridylate synthase NYR34_RS04295 PF01252 Signal peptidase (SPase) II NYR34_RS04305 PF00004 ATPase family associated with various cellular activities (AAA) NYR34_RS04305 PF05362 Lon protease (S16) C-terminal proteolytic domain NYR34_RS04305 PF02190 ATP-dependent protease La (LON) substrate-binding domain NYR34_RS04310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NYR34_RS04315 PF08534 Redoxin NYR34_RS04315 PF01625 Peptide methionine sulfoxide reductase NYR34_RS04315 PF01641 SelR domain NYR34_RS04320 PF01336 OB-fold nucleic acid binding domain NYR34_RS04320 PF00152 tRNA synthetases class II (D, K and N) NYR34_RS04325 PF13393 Histidyl-tRNA synthetase NYR34_RS04325 PF03129 Anticodon binding domain NYR34_RS04335 PF01594 AI-2E family transporter NYR34_RS04340 PF02580 D-Tyr-tRNA(Tyr) deacylase NYR34_RS04345 PF13291 ACT domain NYR34_RS04345 PF04607 Region found in RelA / SpoT proteins NYR34_RS04345 PF02824 TGS domain NYR34_RS04350 PF00156 Phosphoribosyl transferase domain NYR34_RS04355 PF16193 AAA C-terminal domain NYR34_RS04355 PF05496 Holliday junction DNA helicase RuvB P-loop domain NYR34_RS04355 PF12002 MgsA AAA+ ATPase C terminal NYR34_RS04365 PF00753 Metallo-beta-lactamase superfamily NYR34_RS04365 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NYR34_RS04365 PF17770 Ribonuclease J C-terminal domain NYR34_RS04370 PF03838 Recombination protein U NYR34_RS04390 PF01145 SPFH domain / Band 7 family NYR34_RS04400 PF00483 Nucleotidyl transferase NYR34_RS04410 PF00453 Ribosomal protein L20 NYR34_RS04415 PF01632 Ribosomal protein L35 NYR34_RS04420 PF05198 Translation initiation factor IF-3, N-terminal domain NYR34_RS04420 PF00707 Translation initiation factor IF-3, C-terminal domain NYR34_RS04425 PF00664 ABC transporter transmembrane region NYR34_RS04425 PF00005 ABC transporter NYR34_RS04430 PF00664 ABC transporter transmembrane region NYR34_RS04430 PF00005 ABC transporter NYR34_RS04445 PF00557 Metallopeptidase family M24 NYR34_RS04445 PF05195 Aminopeptidase P, N-terminal domain NYR34_RS04450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NYR34_RS04450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NYR34_RS04450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NYR34_RS04450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NYR34_RS04455 PF03309 Type III pantothenate kinase NYR34_RS04460 PF16123 Hydroxyacylglutathione hydrolase C-terminus NYR34_RS04460 PF00753 Metallo-beta-lactamase superfamily NYR34_RS04465 PF00471 Ribosomal protein L33 NYR34_RS04470 PF12848 ABC transporter NYR34_RS04470 PF00005 ABC transporter NYR34_RS04480 PF00293 NUDIX domain NYR34_RS04480 PF09297 NADH pyrophosphatase zinc ribbon domain NYR34_RS04480 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain NYR34_RS04545 PF01725 Ham1 family NYR34_RS04550 PF02517 CPBP intramembrane metalloprotease NYR34_RS04560 PF00216 Bacterial DNA-binding protein NYR34_RS04565 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NYR34_RS04565 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NYR34_RS04570 PF01926 50S ribosome-binding GTPase NYR34_RS04570 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NYR34_RS04575 PF00575 S1 RNA binding domain NYR34_RS04580 PF02224 Cytidylate kinase NYR34_RS04585 PF00849 RNA pseudouridylate synthase NYR34_RS04585 PF01479 S4 domain NYR34_RS04590 PF01132 Elongation factor P (EF-P) OB domain NYR34_RS04590 PF08207 Elongation factor P (EF-P) KOW-like domain NYR34_RS04590 PF09285 Elongation factor P, C-terminal NYR34_RS04595 PF01220 Dehydroquinase class II NYR34_RS04600 PF01202 Shikimate kinase NYR34_RS04610 PF01119 DNA mismatch repair protein, C-terminal domain NYR34_RS04610 PF08676 MutL C terminal dimerisation domain NYR34_RS04615 PF01624 MutS domain I NYR34_RS04615 PF05192 MutS domain III NYR34_RS04615 PF05190 MutS family domain IV NYR34_RS04615 PF00488 MutS domain V NYR34_RS04625 PF13277 YmdB-like protein NYR34_RS04630 PF00013 KH domain NYR34_RS04630 PF12072 Domain of unknown function (DUF3552) NYR34_RS04630 PF01966 HD domain NYR34_RS04640 PF00005 ABC transporter NYR34_RS04640 PF00664 ABC transporter transmembrane region NYR34_RS04645 PF00005 ABC transporter NYR34_RS04645 PF00664 ABC transporter transmembrane region NYR34_RS04650 PF00154 recA bacterial DNA recombination protein NYR34_RS04655 PF01066 CDP-alcohol phosphatidyltransferase NYR34_RS04660 PF01649 Ribosomal protein S20 NYR34_RS04665 PF00929 Exonuclease NYR34_RS04665 PF02811 PHP domain NYR34_RS04665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NYR34_RS04665 PF14579 Helix-hairpin-helix motif NYR34_RS04665 PF11490 DNA polymerase III polC-type N-terminus II NYR34_RS04665 PF14480 DNA polymerase III polC-type N-terminus I NYR34_RS04665 PF07733 Bacterial DNA polymerase III alpha NTPase domain NYR34_RS04675 PF03772 Competence protein NYR34_RS04675 PF00753 Metallo-beta-lactamase superfamily NYR34_RS04690 PF01966 HD domain NYR34_RS04700 PF13344 Haloacid dehalogenase-like hydrolase NYR34_RS04705 PF03449 Transcription elongation factor, N-terminal NYR34_RS04705 PF01272 Transcription elongation factor, GreA/GreB, C-term NYR34_RS04715 PF01596 O-methyltransferase NYR34_RS04720 PF06949 Protein of unknown function (DUF1292) NYR34_RS04725 PF03652 Holliday junction resolvase NYR34_RS04730 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NYR34_RS04730 PF02272 DHHA1 domain NYR34_RS04730 PF01411 tRNA synthetases class II (A) NYR34_RS04735 PF00571 CBS domain NYR34_RS04735 PF03471 Transporter associated domain NYR34_RS04735 PF01595 Cyclin M transmembrane N-terminal domain NYR34_RS04745 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS04745 PF00563 EAL domain NYR34_RS04750 PF00999 Sodium/hydrogen exchanger family NYR34_RS04765 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS04770 PF01795 MraW methylase family NYR34_RS04785 PF00375 Sodium:dicarboxylate symporter family NYR34_RS04840 PF00072 Response regulator receiver domain NYR34_RS04840 PF04397 LytTr DNA-binding domain NYR34_RS04850 PF14319 Transposase zinc-binding domain NYR34_RS04850 PF04986 Putative transposase NYR34_RS04885 PF10706 Aminoglycoside-2''-adenylyltransferase NYR34_RS04915 PF01555 DNA methylase NYR34_RS04925 PF07261 Replication initiation and membrane attachment NYR34_RS04925 PF14297 Domain of unknown function (DUF4373) NYR34_RS04940 PF02899 Phage integrase, N-terminal SAM-like domain NYR34_RS04940 PF00589 Phage integrase family NYR34_RS04975 PF00005 ABC transporter NYR34_RS04975 PF00664 ABC transporter transmembrane region NYR34_RS04980 PF00005 ABC transporter NYR34_RS04980 PF00664 ABC transporter transmembrane region NYR34_RS04995 PF10410 DnaB-helicase binding domain of primase NYR34_RS04995 PF08275 DNA primase catalytic core, N-terminal domain NYR34_RS04995 PF01807 CHC2 zinc finger NYR34_RS05000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NYR34_RS05000 PF03129 Anticodon binding domain NYR34_RS05005 PF02565 Recombination protein O C terminal NYR34_RS05005 PF11967 Recombination protein O N terminal NYR34_RS05010 PF01926 50S ribosome-binding GTPase NYR34_RS05010 PF07650 KH domain NYR34_RS05015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NYR34_RS05020 PF02130 Uncharacterized protein family UPF0054 NYR34_RS05025 PF02562 PhoH-like protein NYR34_RS05030 PF01165 Ribosomal protein S21 NYR34_RS05040 PF03840 Preprotein translocase SecG subunit NYR34_RS05045 PF01497 Periplasmic binding protein NYR34_RS05050 PF00005 ABC transporter NYR34_RS05055 PF01032 FecCD transport family NYR34_RS05060 PF01032 FecCD transport family NYR34_RS05070 PF16123 Hydroxyacylglutathione hydrolase C-terminus NYR34_RS05070 PF00753 Metallo-beta-lactamase superfamily NYR34_RS05075 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NYR34_RS05080 PF01548 Transposase NYR34_RS05080 PF02371 Transposase IS116/IS110/IS902 family NYR34_RS05085 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NYR34_RS05085 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NYR34_RS05090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NYR34_RS05090 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NYR34_RS05095 PF03448 MgtE intracellular N domain NYR34_RS05095 PF00571 CBS domain NYR34_RS05095 PF01769 Divalent cation transporter NYR34_RS05100 PF03448 MgtE intracellular N domain NYR34_RS05100 PF00571 CBS domain NYR34_RS05100 PF01769 Divalent cation transporter NYR34_RS05105 PF03116 NQR2, RnfD, RnfE family NYR34_RS05115 PF02508 Rnf-Nqr subunit, membrane protein NYR34_RS05120 PF02508 Rnf-Nqr subunit, membrane protein NYR34_RS05125 PF00111 2Fe-2S iron-sulfur cluster binding domain NYR34_RS05125 PF00970 Oxidoreductase FAD-binding domain NYR34_RS05125 PF00175 Oxidoreductase NAD-binding domain NYR34_RS05130 PF01813 ATP synthase subunit D NYR34_RS05135 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR34_RS05135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR34_RS05140 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR34_RS05140 PF16886 ATPsynthase alpha/beta subunit N-term extension NYR34_RS05140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR34_RS05165 PF01496 V-type ATPase 116kDa subunit family NYR34_RS05180 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR34_RS05180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR34_RS05185 PF00231 ATP synthase NYR34_RS05190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR34_RS05190 PF00306 ATP synthase alpha/beta chain, C terminal domain NYR34_RS05190 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR34_RS05195 PF00213 ATP synthase delta (OSCP) subunit NYR34_RS05200 PF00430 ATP synthase B/B' CF(0) NYR34_RS05205 PF00137 ATP synthase subunit C NYR34_RS05210 PF00119 ATP synthase A chain NYR34_RS05225 PF01523 Putative modulator of DNA gyrase NYR34_RS05230 PF01523 Putative modulator of DNA gyrase NYR34_RS05235 PF00005 ABC transporter NYR34_RS05235 PF00664 ABC transporter transmembrane region NYR34_RS05240 PF00664 ABC transporter transmembrane region NYR34_RS05240 PF00005 ABC transporter NYR34_RS05260 PF01546 Peptidase family M20/M25/M40 NYR34_RS05260 PF07687 Peptidase dimerisation domain NYR34_RS05265 PF00248 Aldo/keto reductase family NYR34_RS05275 PF00005 ABC transporter NYR34_RS05275 PF09383 NIL domain NYR34_RS05280 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS05285 PF03180 NLPA lipoprotein NYR34_RS05290 PF00924 Mechanosensitive ion channel NYR34_RS05370 PF00563 EAL domain NYR34_RS05370 PF00498 FHA domain NYR34_RS05370 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS05375 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS05375 PF03707 Bacterial signalling protein N terminal repeat NYR34_RS05375 PF00563 EAL domain NYR34_RS05385 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS05395 PF13614 AAA domain NYR34_RS05415 PF17757 UvrB interaction domain NYR34_RS05415 PF04851 Type III restriction enzyme, res subunit NYR34_RS05415 PF00271 Helicase conserved C-terminal domain NYR34_RS05415 PF12344 Ultra-violet resistance protein B NYR34_RS05415 PF02151 UvrB/uvrC motif NYR34_RS05425 PF13361 UvrD-like helicase C-terminal domain NYR34_RS05425 PF00580 UvrD/REP helicase N-terminal domain NYR34_RS05485 PF02254 TrkA-N domain NYR34_RS05485 PF02080 TrkA-C domain NYR34_RS05490 PF02386 Cation transport protein NYR34_RS05500 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NYR34_RS05500 PF00056 lactate/malate dehydrogenase, NAD binding domain NYR34_RS05530 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS05530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NYR34_RS05535 PF00132 Bacterial transferase hexapeptide (six repeats) NYR34_RS05535 PF00483 Nucleotidyl transferase NYR34_RS05540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NYR34_RS05540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NYR34_RS05540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NYR34_RS05540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NYR34_RS05550 PF01380 SIS domain NYR34_RS05555 PF01380 SIS domain NYR34_RS05585 PF00665 Integrase core domain NYR34_RS05585 PF13333 Integrase core domain NYR34_RS05590 PF16363 GDP-mannose 4,6 dehydratase NYR34_RS05595 PF00483 Nucleotidyl transferase NYR34_RS05600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NYR34_RS05605 PF00132 Bacterial transferase hexapeptide (six repeats) NYR34_RS05610 PF02350 UDP-N-acetylglucosamine 2-epimerase NYR34_RS05615 PF01943 Polysaccharide biosynthesis protein NYR34_RS05640 PF01501 Glycosyl transferase family 8 NYR34_RS05640 PF00535 Glycosyl transferase family 2 NYR34_RS05645 PF01370 NAD dependent epimerase/dehydratase family NYR34_RS05650 PF08485 Polysaccharide biosynthesis protein C-terminal NYR34_RS05650 PF02719 Polysaccharide biosynthesis protein NYR34_RS05660 PF02397 Bacterial sugar transferase NYR34_RS05665 PF01370 NAD dependent epimerase/dehydratase family NYR34_RS05670 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NYR34_RS05670 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NYR34_RS05670 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NYR34_RS05685 PF13166 AAA domain NYR34_RS05700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NYR34_RS05700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NYR34_RS05700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NYR34_RS05700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NYR34_RS05720 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS05730 PF01547 Bacterial extracellular solute-binding protein NYR34_RS05760 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) NYR34_RS05760 PF07581 The GLUG motif NYR34_RS05775 PF04556 DpnII restriction endonuclease NYR34_RS05780 PF01555 DNA methylase NYR34_RS05785 PF02086 D12 class N6 adenine-specific DNA methyltransferase NYR34_RS05790 PF00239 Resolvase, N terminal domain NYR34_RS05790 PF02796 Helix-turn-helix domain of resolvase NYR34_RS05795 PF00293 NUDIX domain NYR34_RS05800 PF00271 Helicase conserved C-terminal domain NYR34_RS05800 PF04851 Type III restriction enzyme, res subunit NYR34_RS05810 PF02719 Polysaccharide biosynthesis protein NYR34_RS05815 PF14319 Transposase zinc-binding domain NYR34_RS05815 PF04986 Putative transposase NYR34_RS05825 PF02887 Pyruvate kinase, alpha/beta domain NYR34_RS05825 PF00224 Pyruvate kinase, barrel domain NYR34_RS05825 PF00391 PEP-utilising enzyme, mobile domain NYR34_RS05830 PF00365 Phosphofructokinase NYR34_RS05835 PF00365 Phosphofructokinase NYR34_RS05840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NYR34_RS05840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NYR34_RS05850 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NYR34_RS05850 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NYR34_RS05855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NYR34_RS05860 PF01475 Ferric uptake regulator family NYR34_RS05865 PF00950 ABC 3 transport family NYR34_RS05870 PF00005 ABC transporter NYR34_RS05880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NYR34_RS05880 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NYR34_RS05890 PF00005 ABC transporter NYR34_RS05890 PF12848 ABC transporter NYR34_RS05895 PF04172 LrgB-like family NYR34_RS05900 PF03788 LrgA family NYR34_RS05905 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NYR34_RS05905 PF01872 RibD C-terminal domain NYR34_RS05910 PF00766 Electron transfer flavoprotein FAD-binding domain NYR34_RS05910 PF01012 Electron transfer flavoprotein domain NYR34_RS05925 PF03601 Conserved hypothetical protein 698 NYR34_RS05955 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) NYR34_RS05955 PF07581 The GLUG motif NYR34_RS06005 PF02773 S-adenosylmethionine synthetase, C-terminal domain NYR34_RS06005 PF02772 S-adenosylmethionine synthetase, central domain NYR34_RS06005 PF00438 S-adenosylmethionine synthetase, N-terminal domain NYR34_RS06010 PF01555 DNA methylase NYR34_RS06030 PF01381 Helix-turn-helix NYR34_RS06060 PF00665 Integrase core domain NYR34_RS06060 PF13333 Integrase core domain NYR34_RS06060 PF13276 HTH-like domain NYR34_RS06070 PF00581 Rhodanese-like domain NYR34_RS06070 PF17773 UPF0176 acylphosphatase like domain NYR34_RS06070 PF12368 Rhodanase C-terminal NYR34_RS06080 PF07724 AAA domain (Cdc48 subfamily) NYR34_RS06080 PF00004 ATPase family associated with various cellular activities (AAA) NYR34_RS06080 PF10431 C-terminal, D2-small domain, of ClpB protein NYR34_RS06080 PF02861 Clp amino terminal domain, pathogenicity island component NYR34_RS06080 PF17871 AAA lid domain NYR34_RS06085 PF02541 Ppx/GppA phosphatase family NYR34_RS06095 PF13426 PAS domain NYR34_RS06095 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS06095 PF00563 EAL domain NYR34_RS06115 PF00403 Heavy-metal-associated domain NYR34_RS06120 PF00403 Heavy-metal-associated domain NYR34_RS06145 PF01965 DJ-1/PfpI family NYR34_RS06150 PF01048 Phosphorylase superfamily NYR34_RS06155 PF00485 Phosphoribulokinase / Uridine kinase family NYR34_RS06190 PF13180 PDZ domain NYR34_RS06190 PF02163 Peptidase family M50 NYR34_RS06200 PF01255 Putative undecaprenyl diphosphate synthase NYR34_RS06205 PF01063 Amino-transferase class IV NYR34_RS06220 PF01765 Ribosome recycling factor NYR34_RS06225 PF00696 Amino acid kinase family NYR34_RS06230 PF00889 Elongation factor TS NYR34_RS06235 PF07498 Rho termination factor, N-terminal domain NYR34_RS06235 PF00318 Ribosomal protein S2 NYR34_RS06245 PF00692 dUTPase NYR34_RS06250 PF02899 Phage integrase, N-terminal SAM-like domain NYR34_RS06250 PF00589 Phage integrase family NYR34_RS06255 PF01134 Glucose inhibited division protein A NYR34_RS06260 PF00230 Major intrinsic protein NYR34_RS06275 PF03167 Uracil DNA glycosylase superfamily NYR34_RS06285 PF01813 ATP synthase subunit D NYR34_RS06290 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR34_RS06290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR34_RS06295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NYR34_RS06295 PF02874 ATP synthase alpha/beta family, beta-barrel domain NYR34_RS06295 PF16886 ATPsynthase alpha/beta subunit N-term extension NYR34_RS06315 PF01496 V-type ATPase 116kDa subunit family NYR34_RS06330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NYR34_RS06330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NYR34_RS06340 PF03960 ArsC family NYR34_RS06345 PF01432 Peptidase family M3 NYR34_RS06345 PF08439 Oligopeptidase F NYR34_RS06350 PF00579 tRNA synthetases class I (W and Y) NYR34_RS06355 PF00563 EAL domain NYR34_RS06355 PF03707 Bacterial signalling protein N terminal repeat NYR34_RS06355 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS06360 PF00781 Diacylglycerol kinase catalytic domain NYR34_RS06365 PF01479 S4 domain NYR34_RS06365 PF00579 tRNA synthetases class I (W and Y) NYR34_RS06370 PF00356 Bacterial regulatory proteins, lacI family NYR34_RS06375 PF01245 Ribosomal protein L19 NYR34_RS06380 PF01746 tRNA (Guanine-1)-methyltransferase NYR34_RS06385 PF05239 PRC-barrel domain NYR34_RS06385 PF01782 RimM N-terminal domain NYR34_RS06395 PF00886 Ribosomal protein S16 NYR34_RS06405 PF00849 RNA pseudouridylate synthase NYR34_RS06405 PF01479 S4 domain NYR34_RS06410 PF01327 Polypeptide deformylase NYR34_RS06425 PF00588 SpoU rRNA Methylase family NYR34_RS06425 PF08032 RNA 2'-O ribose methyltransferase substrate binding NYR34_RS06430 PF02568 Thiamine biosynthesis protein (ThiI) NYR34_RS06430 PF02926 THUMP domain NYR34_RS06435 PF13185 GAF domain NYR34_RS06440 PF00163 Ribosomal protein S4/S9 N-terminal domain NYR34_RS06440 PF01479 S4 domain NYR34_RS06445 PF13333 Integrase core domain NYR34_RS06445 PF00665 Integrase core domain NYR34_RS06445 PF13276 HTH-like domain NYR34_RS06455 PF02585 GlcNAc-PI de-N-acetylase NYR34_RS06470 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS06470 PF13192 Thioredoxin domain NYR34_RS06485 PF00121 Triosephosphate isomerase NYR34_RS06490 PF00381 PTS HPr component phosphorylation site NYR34_RS06495 PF01381 Helix-turn-helix NYR34_RS06500 PF00162 Phosphoglycerate kinase NYR34_RS06520 PF01458 Uncharacterized protein family (UPF0051) NYR34_RS06525 PF01592 NifU-like N terminal domain NYR34_RS06530 PF00266 Aminotransferase class-V NYR34_RS06535 PF01458 Uncharacterized protein family (UPF0051) NYR34_RS06540 PF00005 ABC transporter NYR34_RS06560 PF00005 ABC transporter NYR34_RS06560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NYR34_RS06565 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS06565 PF12911 N-terminal TM domain of oligopeptide transport permease C NYR34_RS06570 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS06605 PF13276 HTH-like domain NYR34_RS06605 PF00665 Integrase core domain NYR34_RS06605 PF13333 Integrase core domain NYR34_RS06610 PF03590 Aspartate-ammonia ligase NYR34_RS06630 PF01385 Probable transposase NYR34_RS06630 PF07282 Putative transposase DNA-binding domain NYR34_RS06630 PF12323 Helix-turn-helix domain NYR34_RS06640 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NYR34_RS06655 PF00005 ABC transporter NYR34_RS06660 PF00664 ABC transporter transmembrane region NYR34_RS06660 PF00005 ABC transporter NYR34_RS06665 PF00005 ABC transporter NYR34_RS06665 PF00664 ABC transporter transmembrane region NYR34_RS06695 PF12323 Helix-turn-helix domain NYR34_RS06695 PF01385 Probable transposase NYR34_RS06695 PF07282 Putative transposase DNA-binding domain NYR34_RS06705 PF00118 TCP-1/cpn60 chaperonin family NYR34_RS06710 PF00166 Chaperonin 10 Kd subunit NYR34_RS06715 PF01593 Flavin containing amine oxidoreductase NYR34_RS06730 PF00005 ABC transporter NYR34_RS06735 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS06740 PF03180 NLPA lipoprotein NYR34_RS06745 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS06750 PF09383 NIL domain NYR34_RS06750 PF00005 ABC transporter NYR34_RS06765 PF00403 Heavy-metal-associated domain NYR34_RS06770 PF01022 Bacterial regulatory protein, arsR family NYR34_RS06785 PF13411 MerR HTH family regulatory protein NYR34_RS06815 PF01661 Macro domain NYR34_RS06845 PF06463 Molybdenum Cofactor Synthesis C NYR34_RS06845 PF04055 Radical SAM superfamily NYR34_RS06880 PF01555 DNA methylase NYR34_RS06885 PF00271 Helicase conserved C-terminal domain NYR34_RS06885 PF00176 SNF2 family N-terminal domain NYR34_RS06890 PF00145 C-5 cytosine-specific DNA methylase NYR34_RS06895 PF02899 Phage integrase, N-terminal SAM-like domain NYR34_RS06895 PF00589 Phage integrase family NYR34_RS06900 PF01381 Helix-turn-helix NYR34_RS06905 PF13333 Integrase core domain NYR34_RS06905 PF00665 Integrase core domain NYR34_RS06905 PF13276 HTH-like domain NYR34_RS06930 PF01381 Helix-turn-helix NYR34_RS06940 PF00690 Cation transporter/ATPase, N-terminus NYR34_RS06940 PF00689 Cation transporting ATPase, C-terminus NYR34_RS06945 PF00704 Glycosyl hydrolases family 18 NYR34_RS06950 PF08402 TOBE domain NYR34_RS06950 PF00005 ABC transporter NYR34_RS06955 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS06960 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS06980 PF00268 Ribonucleotide reductase, small chain NYR34_RS06985 PF08343 Ribonucleotide reductase N-terminal NYR34_RS06985 PF02867 Ribonucleotide reductase, barrel domain NYR34_RS06985 PF00317 Ribonucleotide reductase, all-alpha domain NYR34_RS06990 PF07972 NrdI Flavodoxin like NYR34_RS06995 PF04055 Radical SAM superfamily NYR34_RS07000 PF03477 ATP cone domain NYR34_RS07000 PF13597 Anaerobic ribonucleoside-triphosphate reductase NYR34_RS07020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NYR34_RS07020 PF16736 Single Cache-like NYR34_RS07020 PF00989 PAS fold NYR34_RS07020 PF00512 His Kinase A (phospho-acceptor) domain NYR34_RS07025 PF00486 Transcriptional regulatory protein, C terminal NYR34_RS07025 PF00072 Response regulator receiver domain NYR34_RS07030 PF01895 PhoU domain NYR34_RS07035 PF00005 ABC transporter NYR34_RS07040 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS07045 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS07060 PF00005 ABC transporter NYR34_RS07065 PF00781 Diacylglycerol kinase catalytic domain NYR34_RS07070 PF10437 Bacterial lipoate protein ligase C-terminus NYR34_RS07070 PF03099 Biotin/lipoate A/B protein ligase family NYR34_RS07080 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS07085 PF02817 e3 binding domain NYR34_RS07085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NYR34_RS07085 PF00364 Biotin-requiring enzyme NYR34_RS07090 PF02780 Transketolase, C-terminal domain NYR34_RS07090 PF02779 Transketolase, pyrimidine binding domain NYR34_RS07095 PF00676 Dehydrogenase E1 component NYR34_RS07100 PF02661 Fic/DOC family NYR34_RS07115 PF00491 Arginase family NYR34_RS07120 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NYR34_RS07120 PF01276 Orn/Lys/Arg decarboxylase, major domain NYR34_RS07140 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) NYR34_RS07140 PF07581 The GLUG motif NYR34_RS07145 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NYR34_RS07145 PF00925 GTP cyclohydrolase II NYR34_RS07155 PF00348 Polyprenyl synthetase NYR34_RS07160 PF00990 Diguanylate cyclase, GGDEF domain NYR34_RS07160 PF08448 PAS fold NYR34_RS07165 PF00171 Aldehyde dehydrogenase family NYR34_RS07185 PF01699 Sodium/calcium exchanger protein NYR34_RS07200 PF09371 Tex-like protein N-terminal domain NYR34_RS07200 PF00575 S1 RNA binding domain NYR34_RS07200 PF17674 HHH domain NYR34_RS07200 PF16921 Tex protein YqgF-like domain NYR34_RS07210 PF01648 4'-phosphopantetheinyl transferase superfamily NYR34_RS07215 PF14527 WhiA LAGLIDADG-like domain NYR34_RS07215 PF02650 WhiA C-terminal HTH domain NYR34_RS07215 PF10298 WhiA N-terminal LAGLIDADG-like domain NYR34_RS07220 PF07992 Pyridine nucleotide-disulphide oxidoreductase NYR34_RS07225 PF01790 Prolipoprotein diacylglyceryl transferase NYR34_RS07230 PF07475 HPr Serine kinase C-terminal domain NYR34_RS07230 PF02603 HPr Serine kinase N terminus NYR34_RS07240 PF17760 UvrA interaction domain NYR34_RS07240 PF17755 UvrA DNA-binding domain NYR34_RS07240 PF00005 ABC transporter NYR34_RS07245 PF12826 Helix-hairpin-helix motif NYR34_RS07245 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NYR34_RS07245 PF01653 NAD-dependent DNA ligase adenylation domain NYR34_RS07245 PF00533 BRCA1 C Terminus (BRCT) domain NYR34_RS07245 PF03120 NAD-dependent DNA ligase OB-fold domain NYR34_RS07250 PF13361 UvrD-like helicase C-terminal domain NYR34_RS07250 PF00580 UvrD/REP helicase N-terminal domain NYR34_RS07260 PF13361 UvrD-like helicase C-terminal domain NYR34_RS07260 PF00580 UvrD/REP helicase N-terminal domain NYR34_RS07265 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NYR34_RS07265 PF00749 tRNA synthetases class I (E and Q), catalytic domain NYR34_RS07275 PF00814 Glycoprotease family NYR34_RS07285 PF00814 Glycoprotease family NYR34_RS07290 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NYR34_RS07295 PF00342 Phosphoglucose isomerase NYR34_RS07300 PF00575 S1 RNA binding domain NYR34_RS07315 PF02681 Divergent PAP2 family NYR34_RS07320 PF01106 NifU-like domain NYR34_RS07330 PF01812 5-formyltetrahydrofolate cyclo-ligase family NYR34_RS07345 PF02457 DisA bacterial checkpoint controller nucleotide-binding NYR34_RS07350 PF01638 HxlR-like helix-turn-helix NYR34_RS07355 PF01926 50S ribosome-binding GTPase NYR34_RS07355 PF13167 GTP-binding GTPase N-terminal NYR34_RS07355 PF16360 GTP-binding GTPase Middle Region NYR34_RS07360 PF00860 Permease family NYR34_RS07365 PF00860 Permease family NYR34_RS07370 PF01207 Dihydrouridine synthase (Dus) NYR34_RS07375 PF01430 Hsp33 protein NYR34_RS07385 PF00665 Integrase core domain NYR34_RS07385 PF13333 Integrase core domain NYR34_RS07385 PF13276 HTH-like domain NYR34_RS07405 PF02545 Maf-like protein NYR34_RS07410 PF01171 PP-loop family NYR34_RS07410 PF11734 TilS substrate C-terminal domain NYR34_RS07415 PF11734 TilS substrate C-terminal domain NYR34_RS07415 PF01171 PP-loop family NYR34_RS07415 PF00156 Phosphoribosyl transferase domain NYR34_RS07420 PF01434 Peptidase family M41 NYR34_RS07420 PF00004 ATPase family associated with various cellular activities (AAA) NYR34_RS07420 PF17862 AAA+ lid domain NYR34_RS07425 PF01479 S4 domain NYR34_RS07430 PF00152 tRNA synthetases class II (D, K and N) NYR34_RS07430 PF01336 OB-fold nucleic acid binding domain NYR34_RS07455 PF01385 Probable transposase NYR34_RS07455 PF12323 Helix-turn-helix domain NYR34_RS07455 PF07282 Putative transposase DNA-binding domain NYR34_RS07465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NYR34_RS07465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NYR34_RS07470 PF08331 Domain of unknown function (DUF1730) NYR34_RS07480 PF01116 Fructose-bisphosphate aldolase class-II NYR34_RS07485 PF06418 CTP synthase N-terminus NYR34_RS07485 PF00117 Glutamine amidotransferase class-I NYR34_RS07505 PF02132 RecR protein NYR34_RS07505 PF13662 Toprim domain NYR34_RS07510 PF02575 YbaB/EbfC DNA-binding family NYR34_RS07515 PF12169 DNA polymerase III subunits gamma and tau domain III NYR34_RS07520 PF01926 50S ribosome-binding GTPase NYR34_RS07520 PF12631 MnmE helical domain NYR34_RS07520 PF10396 GTP-binding protein TrmE N-terminus NYR34_RS07525 PF02308 MgtC family NYR34_RS07530 PF01368 DHH family NYR34_RS07530 PF02272 DHHA1 domain NYR34_RS07535 PF01368 DHH family NYR34_RS07535 PF02272 DHHA1 domain NYR34_RS07560 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS07565 PF00528 Binding-protein-dependent transport system inner membrane component NYR34_RS07570 PF00005 ABC transporter NYR34_RS07600 PF00005 ABC transporter NYR34_RS07605 PF02687 FtsX-like permease family NYR34_RS07610 PF00255 Glutathione peroxidase NYR34_RS07615 PF04397 LytTr DNA-binding domain NYR34_RS07615 PF00072 Response regulator receiver domain NYR34_RS07630 PF02645 Uncharacterised protein, DegV family COG1307 NYR34_RS07645 PF00152 tRNA synthetases class II (D, K and N) NYR34_RS07645 PF01336 OB-fold nucleic acid binding domain NYR34_RS07650 PF02646 RmuC family NYR34_RS07660 PF14804 Jag N-terminus NYR34_RS07660 PF01424 R3H domain NYR34_RS07665 PF02096 60Kd inner membrane protein NYR34_RS07670 PF00825 Ribonuclease P NYR34_RS07675 PF00468 Ribosomal protein L34