locus-tag class description ACL_RS00010 PF11638 DnaA N-terminal domain ACL_RS00010 PF00308 Bacterial dnaA protein ACL_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix ACL_RS00020 PF00712 DNA polymerase III beta subunit, N-terminal domain ACL_RS00020 PF02767 DNA polymerase III beta subunit, central domain ACL_RS00020 PF02768 DNA polymerase III beta subunit, C-terminal domain ACL_RS00030 PF02463 RecF/RecN/SMC N terminal domain ACL_RS00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_RS00035 PF00986 DNA gyrase B subunit, carboxyl terminus ACL_RS00035 PF00204 DNA gyrase B ACL_RS00035 PF01751 Toprim domain ACL_RS00040 PF03989 DNA gyrase C-terminal domain, beta-propeller ACL_RS00040 PF00521 DNA gyrase/topoisomerase IV, subunit A ACL_RS00045 PF02687 FtsX-like permease family ACL_RS00045 PF12704 MacB-like periplasmic core domain ACL_RS00045 PF00005 ABC transporter ACL_RS00050 PF02403 Seryl-tRNA synthetase N-terminal domain ACL_RS00050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_RS00055 PF00486 Transcriptional regulatory protein, C terminal ACL_RS00055 PF00072 Response regulator receiver domain ACL_RS00060 PF00672 HAMP domain ACL_RS00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_RS00060 PF00512 His Kinase A (phospho-acceptor) domain ACL_RS00065 PF01230 HIT domain ACL_RS00070 PF06130 Phosphate propanoyltransferase ACL_RS00075 PF01966 HD domain ACL_RS00080 PF13662 Toprim domain ACL_RS00080 PF13331 Domain of unknown function (DUF4093) ACL_RS00085 PF00398 Ribosomal RNA adenine dimethylase ACL_RS00090 PF04026 SpoVG ACL_RS00095 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACL_RS00095 PF14572 Phosphoribosyl synthetase-associated domain ACL_RS00100 PF01195 Peptidyl-tRNA hydrolase ACL_RS00105 PF00270 DEAD/DEAH box helicase ACL_RS00105 PF02559 CarD-like/TRCF domain ACL_RS00105 PF03461 TRCF domain ACL_RS00105 PF17757 UvrB interaction domain ACL_RS00105 PF00271 Helicase conserved C-terminal domain ACL_RS00120 PF12464 Maltose acetyltransferase ACL_RS00120 PF14602 Hexapeptide repeat of succinyl-transferase ACL_RS00130 PF13091 PLD-like domain ACL_RS00145 PF02901 Pyruvate formate lyase-like ACL_RS00145 PF01228 Glycine radical ACL_RS00150 PF04055 Radical SAM superfamily ACL_RS00155 PF13545 Crp-like helix-turn-helix domain ACL_RS00155 PF00027 Cyclic nucleotide-binding domain ACL_RS00160 PF03883 Peroxide stress protein YaaA ACL_RS00165 PF01268 Formate--tetrahydrofolate ligase ACL_RS00170 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACL_RS00170 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACL_RS00175 PF03009 Glycerophosphoryl diester phosphodiesterase family ACL_RS00185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ACL_RS00185 PF00356 Bacterial regulatory proteins, lacI family ACL_RS00195 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS00200 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS00205 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ACL_RS00205 PF06165 Glycosyltransferase family 36 ACL_RS00220 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_RS00220 PF12733 Cadherin-like beta sandwich domain ACL_RS00225 PF00719 Inorganic pyrophosphatase ACL_RS00230 PF01709 Transcriptional regulator ACL_RS00240 PF00464 Serine hydroxymethyltransferase ACL_RS00250 PF03116 NQR2, RnfD, RnfE family ACL_RS00290 PF01197 Ribosomal protein L31 ACL_RS00295 PF00265 Thymidine kinase ACL_RS00310 PF00456 Transketolase, thiamine diphosphate binding domain ACL_RS00310 PF02780 Transketolase, C-terminal domain ACL_RS00310 PF02779 Transketolase, pyrimidine binding domain ACL_RS00315 PF13932 GidA associated domain ACL_RS00315 PF01134 Glucose inhibited division protein A ACL_RS00320 PF02527 rRNA small subunit methyltransferase G ACL_RS00405 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACL_RS00405 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACL_RS00410 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS00425 PF00338 Ribosomal protein S10p/S20e ACL_RS00430 PF00297 Ribosomal protein L3 ACL_RS00435 PF00573 Ribosomal protein L4/L1 family ACL_RS00440 PF00276 Ribosomal protein L23 ACL_RS00445 PF03947 Ribosomal Proteins L2, C-terminal domain ACL_RS00445 PF00181 Ribosomal Proteins L2, RNA binding domain ACL_RS00450 PF00203 Ribosomal protein S19 ACL_RS00455 PF00237 Ribosomal protein L22p/L17e ACL_RS00460 PF00189 Ribosomal protein S3, C-terminal domain ACL_RS00460 PF07650 KH domain ACL_RS00465 PF00252 Ribosomal protein L16p/L10e ACL_RS00470 PF00831 Ribosomal L29 protein ACL_RS00475 PF00366 Ribosomal protein S17 ACL_RS00480 PF00238 Ribosomal protein L14p/L23e ACL_RS00485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACL_RS00490 PF00281 Ribosomal protein L5 ACL_RS00490 PF00673 ribosomal L5P family C-terminus ACL_RS00495 PF00253 Ribosomal protein S14p/S29e ACL_RS00500 PF00410 Ribosomal protein S8 ACL_RS00505 PF00347 Ribosomal protein L6 ACL_RS00510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACL_RS00515 PF00333 Ribosomal protein S5, N-terminal domain ACL_RS00515 PF03719 Ribosomal protein S5, C-terminal domain ACL_RS00520 PF00327 Ribosomal protein L30p/L7e ACL_RS00525 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACL_RS00530 PF00344 SecY translocase ACL_RS00535 PF05191 Adenylate kinase, active site lid ACL_RS00540 PF00557 Metallopeptidase family M24 ACL_RS00545 PF01176 Translation initiation factor 1A / IF-1 ACL_RS00550 PF00444 Ribosomal protein L36 ACL_RS00555 PF00416 Ribosomal protein S13/S18 ACL_RS00560 PF00411 Ribosomal protein S11 ACL_RS00565 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACL_RS00565 PF01000 RNA polymerase Rpb3/RpoA insert domain ACL_RS00565 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACL_RS00570 PF01196 Ribosomal protein L17 ACL_RS00585 PF00117 Glutamine amidotransferase class-I ACL_RS00585 PF13302 Acetyltransferase (GNAT) domain ACL_RS00585 PF03352 Methyladenine glycosylase ACL_RS00585 PF00958 GMP synthase C terminal domain ACL_RS00585 PF13673 Acetyltransferase (GNAT) domain ACL_RS00600 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS00605 PF00085 Thioredoxin ACL_RS00610 PF00005 ABC transporter ACL_RS00615 PF00005 ABC transporter ACL_RS00625 PF01416 tRNA pseudouridine synthase ACL_RS00630 PF02223 Thymidylate kinase ACL_RS00640 PF05175 Methyltransferase small domain ACL_RS00645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACL_RS00655 PF08264 Anticodon-binding domain of tRNA ACL_RS00655 PF09334 tRNA synthetases class I (M) ACL_RS00655 PF01588 Putative tRNA binding domain ACL_RS00660 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACL_RS00660 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ACL_RS00665 PF01906 Putative heavy-metal-binding ACL_RS00680 PF00572 Ribosomal protein L13 ACL_RS00685 PF00380 Ribosomal protein S9/S16 ACL_RS00690 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACL_RS00700 PF02040 Arsenical pump membrane protein ACL_RS00710 PF01406 tRNA synthetases class I (C) catalytic domain ACL_RS00715 PF00636 Ribonuclease III domain ACL_RS00725 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACL_RS00725 PF00588 SpoU rRNA Methylase family ACL_RS00740 PF00471 Ribosomal protein L33 ACL_RS00750 PF00467 KOW motif ACL_RS00750 PF02357 Transcription termination factor nusG ACL_RS00785 PF04231 Endonuclease I ACL_RS00805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACL_RS00815 PF03946 Ribosomal protein L11, N-terminal domain ACL_RS00815 PF00298 Ribosomal protein L11, RNA binding domain ACL_RS00820 PF00687 Ribosomal protein L1p/L10e family ACL_RS00825 PF00466 Ribosomal protein L10 ACL_RS00830 PF00542 Ribosomal protein L7/L12 C-terminal domain ACL_RS00830 PF16320 Ribosomal protein L7/L12 dimerisation domain ACL_RS00835 PF05175 Methyltransferase small domain ACL_RS00840 PF10385 RNA polymerase beta subunit external 1 domain ACL_RS00840 PF00562 RNA polymerase Rpb2, domain 6 ACL_RS00840 PF04560 RNA polymerase Rpb2, domain 7 ACL_RS00840 PF04563 RNA polymerase beta subunit ACL_RS00840 PF04565 RNA polymerase Rpb2, domain 3 ACL_RS00840 PF04561 RNA polymerase Rpb2, domain 2 ACL_RS00845 PF05000 RNA polymerase Rpb1, domain 4 ACL_RS00845 PF04983 RNA polymerase Rpb1, domain 3 ACL_RS00845 PF00623 RNA polymerase Rpb1, domain 2 ACL_RS00845 PF04997 RNA polymerase Rpb1, domain 1 ACL_RS00845 PF04998 RNA polymerase Rpb1, domain 5 ACL_RS00855 PF03707 Bacterial signalling protein N terminal repeat ACL_RS00855 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS00855 PF00563 EAL domain ACL_RS00870 PF00171 Aldehyde dehydrogenase family ACL_RS00870 PF00465 Iron-containing alcohol dehydrogenase ACL_RS00885 PF02638 Glycosyl hydrolase-like 10 ACL_RS00895 PF02638 Glycosyl hydrolase-like 10 ACL_RS00905 PF00164 Ribosomal protein S12/S23 ACL_RS00910 PF00177 Ribosomal protein S7p/S5e ACL_RS00915 PF03144 Elongation factor Tu domain 2 ACL_RS00915 PF00679 Elongation factor G C-terminus ACL_RS00915 PF00009 Elongation factor Tu GTP binding domain ACL_RS00915 PF03764 Elongation factor G, domain IV ACL_RS00915 PF14492 Elongation Factor G, domain II ACL_RS00920 PF00009 Elongation factor Tu GTP binding domain ACL_RS00920 PF03144 Elongation factor Tu domain 2 ACL_RS00920 PF03143 Elongation factor Tu C-terminal domain ACL_RS00925 PF01026 TatD related DNase ACL_RS00935 PF00595 PDZ domain ACL_RS00945 PF01250 Ribosomal protein S6 ACL_RS00950 PF00436 Single-strand binding protein family ACL_RS00955 PF01084 Ribosomal protein S18 ACL_RS00960 PF01281 Ribosomal protein L9, N-terminal domain ACL_RS00960 PF01368 DHH family ACL_RS00960 PF02272 DHHA1 domain ACL_RS00960 PF03948 Ribosomal protein L9, C-terminal domain ACL_RS00965 PF00772 DnaB-like helicase N terminal domain ACL_RS00965 PF03796 DnaB-like helicase C terminal domain ACL_RS00970 PF00210 Ferritin-like domain ACL_RS00985 PF00472 RF-1 domain ACL_RS00985 PF03462 PCRF domain ACL_RS00990 PF13847 Methyltransferase domain ACL_RS00990 PF17827 PrmC N-terminal domain ACL_RS00995 PF01300 Telomere recombination ACL_RS01000 PF03144 Elongation factor Tu domain 2 ACL_RS01000 PF00679 Elongation factor G C-terminus ACL_RS01000 PF14492 Elongation Factor G, domain II ACL_RS01000 PF00009 Elongation factor Tu GTP binding domain ACL_RS01005 PF02502 Ribose/Galactose Isomerase ACL_RS01020 PF09186 Domain of unknown function (DUF1949) ACL_RS01020 PF01205 Uncharacterized protein family UPF0029 ACL_RS01030 PF01966 HD domain ACL_RS01045 PF02590 Predicted SPOUT methyltransferase ACL_RS01050 PF01741 Large-conductance mechanosensitive channel, MscL ACL_RS01055 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS01060 PF18152 DAHP synthase ferredoxin-like domain ACL_RS01060 PF00793 DAHP synthetase I family ACL_RS01065 PF02153 Prephenate dehydrogenase ACL_RS01070 PF01761 3-dehydroquinate synthase ACL_RS01075 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACL_RS01080 PF00800 Prephenate dehydratase ACL_RS01080 PF01842 ACT domain ACL_RS01080 PF01817 Chorismate mutase type II ACL_RS01085 PF08501 Shikimate dehydrogenase substrate binding domain ACL_RS01090 PF01264 Chorismate synthase ACL_RS01095 PF06081 Aromatic acid exporter family member 1 ACL_RS01095 PF11728 Putative aromatic acid exporter C-terminal domain ACL_RS01100 PF00368 Hydroxymethylglutaryl-coenzyme A reductase ACL_RS01105 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACL_RS01105 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACL_RS01110 PF17191 RecG wedge domain ACL_RS01110 PF00271 Helicase conserved C-terminal domain ACL_RS01110 PF00270 DEAD/DEAH box helicase ACL_RS01115 PF02504 Fatty acid synthesis protein ACL_RS01120 PF00035 Double-stranded RNA binding motif ACL_RS01120 PF14622 Ribonuclease-III-like ACL_RS01130 PF00730 HhH-GPD superfamily base excision DNA repair protein ACL_RS01130 PF10576 Iron-sulfur binding domain of endonuclease III ACL_RS01130 PF00633 Helix-hairpin-helix motif ACL_RS01140 PF00005 ABC transporter ACL_RS01140 PF00664 ABC transporter transmembrane region ACL_RS01145 PF00005 ABC transporter ACL_RS01145 PF00664 ABC transporter transmembrane region ACL_RS01155 PF00258 Flavodoxin ACL_RS01160 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACL_RS01160 PF14579 Helix-hairpin-helix motif ACL_RS01160 PF02811 PHP domain ACL_RS01160 PF01336 OB-fold nucleic acid binding domain ACL_RS01160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACL_RS01165 PF02073 Thermophilic metalloprotease (M29) ACL_RS01180 PF10282 Lactonase, 7-bladed beta-propeller ACL_RS01185 PF00550 Phosphopantetheine attachment site ACL_RS01190 PF08264 Anticodon-binding domain of tRNA ACL_RS01190 PF09334 tRNA synthetases class I (M) ACL_RS01190 PF13603 Leucyl-tRNA synthetase, Domain 2 ACL_RS01200 PF06962 Putative rRNA methylase ACL_RS01205 PF04055 Radical SAM superfamily ACL_RS01205 PF16199 Radical_SAM C-terminal domain ACL_RS01215 PF02811 PHP domain ACL_RS01215 PF00929 Exonuclease ACL_RS01215 PF14579 Helix-hairpin-helix motif ACL_RS01215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACL_RS01215 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACL_RS01215 PF14480 DNA polymerase III polC-type N-terminus I ACL_RS01215 PF11490 DNA polymerase III polC-type N-terminus II ACL_RS01225 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACL_RS01225 PF01409 tRNA synthetases class II core domain (F) ACL_RS01230 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACL_RS01230 PF01588 Putative tRNA binding domain ACL_RS01230 PF03147 Ferredoxin-fold anticodon binding domain ACL_RS01230 PF03484 tRNA synthetase B5 domain ACL_RS01230 PF03483 B3/4 domain ACL_RS01235 PF04055 Radical SAM superfamily ACL_RS01240 PF03193 RsgA GTPase ACL_RS01245 PF00834 Ribulose-phosphate 3 epimerase family ACL_RS01255 PF00830 Ribosomal L28 family ACL_RS01260 PF02734 DAK2 domain ACL_RS01260 PF13684 Dihydroxyacetone kinase family ACL_RS01285 PF09992 Phosphodiester glycosidase ACL_RS01285 PF12708 Pectate lyase superfamily protein ACL_RS01290 PF01380 SIS domain ACL_RS01290 PF01418 Helix-turn-helix domain, rpiR family ACL_RS01295 PF03702 Anhydro-N-acetylmuramic acid kinase ACL_RS01300 PF11975 Family 4 glycosyl hydrolase C-terminal domain ACL_RS01300 PF02056 Family 4 glycosyl hydrolase ACL_RS01305 PF02638 Glycosyl hydrolase-like 10 ACL_RS01315 PF00144 Beta-lactamase ACL_RS01340 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS01345 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS01365 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS01370 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS01380 PF07075 Protein of unknown function (DUF1343) ACL_RS01385 PF00933 Glycosyl hydrolase family 3 N terminal domain ACL_RS01385 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACL_RS01395 PF01380 SIS domain ACL_RS01405 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ACL_RS01420 PF04167 Protein of unknown function (DUF402) ACL_RS01425 PF04608 Phosphatidylglycerophosphatase A ACL_RS01430 PF02146 Sir2 family ACL_RS01445 PF08241 Methyltransferase domain ACL_RS01455 PF00313 'Cold-shock' DNA-binding domain ACL_RS01465 PF13018 Extended Signal Peptide of Type V secretion system ACL_RS01465 PF05860 haemagglutination activity domain ACL_RS01465 PF03543 Yersinia/Haemophilus virulence surface antigen ACL_RS01465 PF02661 Fic/DOC family ACL_RS01465 PF13332 Hemagglutinin repeat ACL_RS01470 PF17783 CvfB-like winged helix domain ACL_RS01470 PF13509 S1 domain ACL_RS01475 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_RS01475 PF09180 Prolyl-tRNA synthetase, C-terminal ACL_RS01475 PF03129 Anticodon binding domain ACL_RS01485 PF01809 Putative membrane protein insertion efficiency factor ACL_RS01490 PF03764 Elongation factor G, domain IV ACL_RS01490 PF03144 Elongation factor Tu domain 2 ACL_RS01490 PF14492 Elongation Factor G, domain II ACL_RS01490 PF00679 Elongation factor G C-terminus ACL_RS01490 PF00009 Elongation factor Tu GTP binding domain ACL_RS01500 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ACL_RS01500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACL_RS01510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACL_RS01510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACL_RS01520 PF00625 Guanylate kinase ACL_RS01525 PF01192 RNA polymerase Rpb6 ACL_RS01530 PF01541 GIY-YIG catalytic domain ACL_RS01530 PF08459 UvrC Helix-hairpin-helix N-terminal ACL_RS01540 PF07690 Major Facilitator Superfamily ACL_RS01545 PF17770 Ribonuclease J C-terminal domain ACL_RS01545 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACL_RS01545 PF00753 Metallo-beta-lactamase superfamily ACL_RS01560 PF01244 Membrane dipeptidase (Peptidase family M19) ACL_RS01575 PF01467 Cytidylyltransferase-like ACL_RS01580 PF02576 RimP N-terminal domain ACL_RS01580 PF17384 RimP C-terminal SH3 domain ACL_RS01585 PF13184 NusA-like KH domain ACL_RS01585 PF00575 S1 RNA binding domain ACL_RS01585 PF08529 NusA N-terminal domain ACL_RS01590 PF04296 Protein of unknown function (DUF448) ACL_RS01595 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family ACL_RS01600 PF11987 Translation-initiation factor 2 ACL_RS01600 PF00009 Elongation factor Tu GTP binding domain ACL_RS01600 PF04760 Translation initiation factor IF-2, N-terminal region ACL_RS01605 PF02033 Ribosome-binding factor A ACL_RS01620 PF04851 Type III restriction enzyme, res subunit ACL_RS01620 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACL_RS01620 PF18074 Primosomal protein N C-terminal domain ACL_RS01620 PF17764 3′ DNA-binding domain (3′BD) ACL_RS01620 PF00271 Helicase conserved C-terminal domain ACL_RS01625 PF02911 Formyl transferase, C-terminal domain ACL_RS01625 PF00551 Formyl transferase ACL_RS01630 PF04608 Phosphatidylglycerophosphatase A ACL_RS01640 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACL_RS01640 PF02772 S-adenosylmethionine synthetase, central domain ACL_RS01640 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACL_RS01650 PF07516 SecA Wing and Scaffold domain ACL_RS01650 PF01043 SecA preprotein cross-linking domain ACL_RS01650 PF07517 SecA DEAD-like domain ACL_RS01655 PF03462 PCRF domain ACL_RS01655 PF00472 RF-1 domain ACL_RS01660 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACL_RS01660 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ACL_RS01665 PF02631 RecX family ACL_RS01680 PF17854 FtsK alpha domain ACL_RS01680 PF09397 Ftsk gamma domain ACL_RS01680 PF01580 FtsK/SpoIIIE family ACL_RS01685 PF01926 50S ribosome-binding GTPase ACL_RS01690 PF01351 Ribonuclease HII ACL_RS01695 PF01131 DNA topoisomerase ACL_RS01695 PF01751 Toprim domain ACL_RS01695 PF01396 Topoisomerase DNA binding C4 zinc finger ACL_RS01700 PF12733 Cadherin-like beta sandwich domain ACL_RS01700 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_RS01705 PF00005 ABC transporter ACL_RS01725 PF16325 Peptidase family U32 C-terminal domain ACL_RS01725 PF01136 Peptidase family U32 ACL_RS01730 PF08534 Redoxin ACL_RS01735 PF02881 SRP54-type protein, helical bundle domain ACL_RS01735 PF00448 SRP54-type protein, GTPase domain ACL_RS01740 PF04297 Putative helix-turn-helix protein, YlxM / p13 like ACL_RS01745 PF00448 SRP54-type protein, GTPase domain ACL_RS01745 PF02881 SRP54-type protein, helical bundle domain ACL_RS01745 PF02978 Signal peptide binding domain ACL_RS01750 PF01367 5'-3' exonuclease, C-terminal SAM fold ACL_RS01750 PF00476 DNA polymerase family A ACL_RS01750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACL_RS01770 PF03129 Anticodon binding domain ACL_RS01770 PF02824 TGS domain ACL_RS01770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_RS01770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACL_RS01775 PF00005 ABC transporter ACL_RS01775 PF13732 Domain of unknown function (DUF4162) ACL_RS01785 PF10609 NUBPL iron-transfer P-loop NTPase ACL_RS01800 PF12826 Helix-hairpin-helix motif ACL_RS01800 PF04002 RadC-like JAB domain ACL_RS01810 PF00829 Ribosomal prokaryotic L21 protein ACL_RS01820 PF01016 Ribosomal L27 protein ACL_RS01825 PF09269 Domain of unknown function (DUF1967) ACL_RS01825 PF01018 GTP1/OBG ACL_RS01825 PF01926 50S ribosome-binding GTPase ACL_RS01845 PF07499 RuvA, C-terminal domain ACL_RS01845 PF01330 RuvA N terminal domain ACL_RS01850 PF17864 RuvB AAA lid domain ACL_RS01850 PF05491 RuvB C-terminal winged helix domain ACL_RS01850 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACL_RS01855 PF02547 Queuosine biosynthesis protein ACL_RS01860 PF02673 Bacitracin resistance protein BacA ACL_RS01870 PF00381 PTS HPr component phosphorylation site ACL_RS01880 PF02390 Putative methyltransferase ACL_RS01885 PF05343 M42 glutamyl aminopeptidase ACL_RS01890 PF00248 Aldo/keto reductase family ACL_RS01895 PF00986 DNA gyrase B subunit, carboxyl terminus ACL_RS01895 PF00204 DNA gyrase B ACL_RS01895 PF01751 Toprim domain ACL_RS01895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_RS01900 PF00521 DNA gyrase/topoisomerase IV, subunit A ACL_RS01900 PF03989 DNA gyrase C-terminal domain, beta-propeller ACL_RS01915 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS01935 PF02608 ABC transporter substrate-binding protein PnrA-like ACL_RS01945 PF02653 Branched-chain amino acid transport system / permease component ACL_RS01950 PF02653 Branched-chain amino acid transport system / permease component ACL_RS01955 PF01712 Deoxynucleoside kinase ACL_RS01960 PF04542 Sigma-70 region 2 ACL_RS01960 PF08281 Sigma-70, region 4 ACL_RS01970 PF12791 Anti-sigma factor N-terminus ACL_RS01975 PF02347 Glycine cleavage system P-protein ACL_RS01980 PF02347 Glycine cleavage system P-protein ACL_RS01985 PF01597 Glycine cleavage H-protein ACL_RS01990 PF01571 Aminomethyltransferase folate-binding domain ACL_RS01990 PF08669 Glycine cleavage T-protein C-terminal barrel domain ACL_RS02000 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACL_RS02000 PF01676 Metalloenzyme superfamily ACL_RS02010 PF00113 Enolase, C-terminal TIM barrel domain ACL_RS02010 PF03952 Enolase, N-terminal domain ACL_RS02015 PF02142 MGS-like domain ACL_RS02025 PF08206 Ribonuclease B OB domain ACL_RS02025 PF00773 RNB domain ACL_RS02025 PF00575 S1 RNA binding domain ACL_RS02025 PF17876 Cold shock domain ACL_RS02030 PF01668 SmpB protein ACL_RS02035 PF01734 Patatin-like phospholipase ACL_RS02040 PF01569 PAP2 superfamily ACL_RS02070 PF00294 pfkB family carbohydrate kinase ACL_RS02075 PF00817 impB/mucB/samB family ACL_RS02075 PF11798 IMS family HHH motif ACL_RS02075 PF11799 impB/mucB/samB family C-terminal domain ACL_RS02090 PF00005 ABC transporter ACL_RS02090 PF00664 ABC transporter transmembrane region ACL_RS02095 PF00664 ABC transporter transmembrane region ACL_RS02095 PF00005 ABC transporter ACL_RS02105 PF07055 Enoyl reductase FAD binding domain ACL_RS02105 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ACL_RS02105 PF12241 Trans-2-enoyl-CoA reductase catalytic region ACL_RS02110 PF00011 Hsp20/alpha crystallin family ACL_RS02115 PF02913 FAD linked oxidases, C-terminal domain ACL_RS02115 PF01565 FAD binding domain ACL_RS02120 PF08274 PhnA Zinc-Ribbon ACL_RS02120 PF03831 PhnA domain ACL_RS02145 PF00403 Heavy-metal-associated domain ACL_RS02155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACL_RS02155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ACL_RS02165 PF00270 DEAD/DEAH box helicase ACL_RS02165 PF00271 Helicase conserved C-terminal domain ACL_RS02185 PF00391 PEP-utilising enzyme, mobile domain ACL_RS02185 PF05524 PEP-utilising enzyme, N-terminal ACL_RS02185 PF02896 PEP-utilising enzyme, TIM barrel domain ACL_RS02195 PF13784 Fic/DOC family N-terminal ACL_RS02195 PF02661 Fic/DOC family ACL_RS02205 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_RS02205 PF01938 TRAM domain ACL_RS02240 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS02245 PF00128 Alpha amylase, catalytic domain ACL_RS02250 PF12034 Domain of unknown function (DUF3520) ACL_RS02250 PF00092 von Willebrand factor type A domain ACL_RS02250 PF12450 von Willebrand factor ACL_RS02260 PF00563 EAL domain ACL_RS02260 PF13426 PAS domain ACL_RS02260 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS02285 PF00364 Biotin-requiring enzyme ACL_RS02290 PF02785 Biotin carboxylase C-terminal domain ACL_RS02290 PF00289 Biotin carboxylase, N-terminal domain ACL_RS02290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACL_RS02295 PF17848 Acetyl-coA carboxylase zinc finger domain ACL_RS02295 PF01039 Carboxyl transferase domain ACL_RS02300 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACL_RS02305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACL_RS02305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACL_RS02310 PF00698 Acyl transferase domain ACL_RS02320 PF02801 Beta-ketoacyl synthase, C-terminal domain ACL_RS02320 PF00109 Beta-ketoacyl synthase, N-terminal domain ACL_RS02325 PF07977 FabA-like domain ACL_RS02335 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS02340 PF03551 Transcriptional regulator PadR-like family ACL_RS02355 PF08402 TOBE domain ACL_RS02355 PF00005 ABC transporter ACL_RS02360 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS02365 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS02375 PF01029 NusB family ACL_RS02380 PF02601 Exonuclease VII, large subunit ACL_RS02380 PF13742 OB-fold nucleic acid binding domain ACL_RS02385 PF02609 Exonuclease VII small subunit ACL_RS02390 PF01728 FtsJ-like methyltransferase ACL_RS02390 PF01479 S4 domain ACL_RS02395 PF13476 AAA domain ACL_RS02405 PF00817 impB/mucB/samB family ACL_RS02405 PF11799 impB/mucB/samB family C-terminal domain ACL_RS02405 PF11798 IMS family HHH motif ACL_RS02410 PF00270 DEAD/DEAH box helicase ACL_RS02410 PF00271 Helicase conserved C-terminal domain ACL_RS02415 PF01261 Xylose isomerase-like TIM barrel ACL_RS02425 PF02583 Metal-sensitive transcriptional repressor ACL_RS02430 PF05746 DALR anticodon binding domain ACL_RS02430 PF00750 tRNA synthetases class I (R) ACL_RS02430 PF03485 Arginyl tRNA synthetase N terminal domain ACL_RS02440 PF13439 Glycosyltransferase Family 4 ACL_RS02440 PF00534 Glycosyl transferases group 1 ACL_RS02455 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACL_RS02465 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ACL_RS02465 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain ACL_RS02465 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ACL_RS02475 PF00588 SpoU rRNA Methylase family ACL_RS02480 PF03006 Haemolysin-III related ACL_RS02485 PF00871 Acetokinase family ACL_RS02500 PF00005 ABC transporter ACL_RS02500 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACL_RS02505 PF00005 ABC transporter ACL_RS02515 PF00440 Bacterial regulatory proteins, tetR family ACL_RS02520 PF00108 Thiolase, N-terminal domain ACL_RS02520 PF02803 Thiolase, C-terminal domain ACL_RS02530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACL_RS02530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACL_RS02535 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ACL_RS02535 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ACL_RS02540 PF00561 alpha/beta hydrolase fold ACL_RS02545 PF12697 Alpha/beta hydrolase family ACL_RS02550 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_RS02550 PF01938 TRAM domain ACL_RS02565 PF00271 Helicase conserved C-terminal domain ACL_RS02565 PF00270 DEAD/DEAH box helicase ACL_RS02570 PF01938 TRAM domain ACL_RS02570 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_RS02600 PF08323 Starch synthase catalytic domain ACL_RS02600 PF00534 Glycosyl transferases group 1 ACL_RS02605 PF00483 Nucleotidyl transferase ACL_RS02620 PF13086 AAA domain ACL_RS02620 PF13087 AAA domain ACL_RS02620 PF13195 Protein of unknown function (DUF4011) ACL_RS02635 PF02586 SOS response associated peptidase (SRAP) ACL_RS02650 PF00343 Carbohydrate phosphorylase ACL_RS02655 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACL_RS02655 PF00128 Alpha amylase, catalytic domain ACL_RS02655 PF02806 Alpha amylase, C-terminal all-beta domain ACL_RS02660 PF00356 Bacterial regulatory proteins, lacI family ACL_RS02665 PF00128 Alpha amylase, catalytic domain ACL_RS02665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACL_RS02665 PF17999 Pullulanase N1-terminal domain ACL_RS02675 PF13439 Glycosyltransferase Family 4 ACL_RS02675 PF00534 Glycosyl transferases group 1 ACL_RS02680 PF00248 Aldo/keto reductase family ACL_RS02685 PF05698 Bacterial trigger factor protein (TF) C-terminus ACL_RS02685 PF05697 Bacterial trigger factor protein (TF) ACL_RS02685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACL_RS02690 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACL_RS02690 PF05362 Lon protease (S16) C-terminal proteolytic domain ACL_RS02690 PF00004 ATPase family associated with various cellular activities (AAA) ACL_RS02695 PF01926 50S ribosome-binding GTPase ACL_RS02700 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS02710 PF13302 Acetyltransferase (GNAT) domain ACL_RS02715 PF08264 Anticodon-binding domain of tRNA ACL_RS02715 PF00133 tRNA synthetases class I (I, L, M and V) ACL_RS02715 PF10458 Valyl tRNA synthetase tRNA binding arm ACL_RS02720 PF08245 Mur ligase middle domain ACL_RS02720 PF02875 Mur ligase family, glutamate ligase domain ACL_RS02725 PF12146 Serine aminopeptidase, S33 ACL_RS02730 PF07690 Major Facilitator Superfamily ACL_RS02745 PF02660 Glycerol-3-phosphate acyltransferase ACL_RS02750 PF01628 HrcA protein C terminal domain ACL_RS02755 PF01025 GrpE ACL_RS02760 PF00012 Hsp70 protein ACL_RS02765 PF01556 DnaJ C terminal domain ACL_RS02765 PF00226 DnaJ domain ACL_RS02765 PF00684 DnaJ central domain ACL_RS02770 PF03099 Biotin/lipoate A/B protein ligase family ACL_RS02770 PF10437 Bacterial lipoate protein ligase C-terminus ACL_RS02775 PF02620 Large ribosomal RNA subunit accumulation protein YceD ACL_RS02780 PF01783 Ribosomal L32p protein family ACL_RS02785 PF01795 MraW methylase family ACL_RS02795 PF01467 Cytidylyltransferase-like ACL_RS02800 PF00795 Carbon-nitrogen hydrolase ACL_RS02800 PF02540 NAD synthase ACL_RS02810 PF14490 Helix-hairpin-helix containing domain ACL_RS02810 PF13538 UvrD-like helicase C-terminal domain ACL_RS02810 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ACL_RS02825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACL_RS02830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACL_RS02835 PF01047 MarR family ACL_RS02840 PF01738 Dienelactone hydrolase family ACL_RS02855 PF02475 Met-10+ like-protein ACL_RS02855 PF01938 TRAM domain ACL_RS02855 PF05958 tRNA (Uracil-5-)-methyltransferase ACL_RS02940 PF02384 N-6 DNA Methylase ACL_RS02945 PF01420 Type I restriction modification DNA specificity domain ACL_RS02950 PF11867 Domain of unknown function (DUF3387) ACL_RS02950 PF18766 SWI2/SNF2 ATPase ACL_RS02950 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACL_RS02990 PF02772 S-adenosylmethionine synthetase, central domain ACL_RS02990 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACL_RS02990 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACL_RS03135 PF05105 Bacteriophage holin family ACL_RS03155 PF13180 PDZ domain ACL_RS03180 PF14622 Ribonuclease-III-like ACL_RS03180 PF00035 Double-stranded RNA binding motif ACL_RS03195 PF01553 Acyltransferase ACL_RS03210 PF00005 ABC transporter ACL_RS03220 PF07859 alpha/beta hydrolase fold ACL_RS03225 PF00849 RNA pseudouridylate synthase ACL_RS03225 PF01479 S4 domain ACL_RS03230 PF01479 S4 domain ACL_RS03230 PF00849 RNA pseudouridylate synthase ACL_RS03235 PF01184 GPR1/FUN34/yaaH family ACL_RS03240 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACL_RS03245 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS03250 PF00005 ABC transporter ACL_RS03260 PF00106 short chain dehydrogenase ACL_RS03265 PF01641 SelR domain ACL_RS03270 PF02446 4-alpha-glucanotransferase ACL_RS03275 PF00128 Alpha amylase, catalytic domain ACL_RS03275 PF16657 Maltogenic Amylase, C-terminal domain ACL_RS03280 PF02903 Alpha amylase, N-terminal ig-like domain ACL_RS03280 PF16657 Maltogenic Amylase, C-terminal domain ACL_RS03280 PF00128 Alpha amylase, catalytic domain ACL_RS03285 PF00128 Alpha amylase, catalytic domain ACL_RS03300 PF13416 Bacterial extracellular solute-binding protein ACL_RS03320 PF03714 Bacterial pullanase-associated domain ACL_RS03320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACL_RS03320 PF00128 Alpha amylase, catalytic domain ACL_RS03330 PF00128 Alpha amylase, catalytic domain ACL_RS03335 PF03459 TOBE domain ACL_RS03335 PF17912 MalK OB fold domain ACL_RS03335 PF00005 ABC transporter ACL_RS03340 PF00255 Glutathione peroxidase ACL_RS03345 PF03471 Transporter associated domain ACL_RS03345 PF01595 Cyclin M transmembrane N-terminal domain ACL_RS03345 PF00571 CBS domain ACL_RS03370 PF00009 Elongation factor Tu GTP binding domain ACL_RS03370 PF03144 Elongation factor Tu domain 2 ACL_RS03370 PF06421 GTP-binding protein LepA C-terminus ACL_RS03370 PF00679 Elongation factor G C-terminus ACL_RS03375 PF06969 HemN C-terminal domain ACL_RS03375 PF04055 Radical SAM superfamily ACL_RS03380 PF02899 Phage integrase, N-terminal SAM-like domain ACL_RS03380 PF00589 Phage integrase family ACL_RS03385 PF01676 Metalloenzyme superfamily ACL_RS03390 PF03672 Uncharacterised protein family (UPF0154) ACL_RS03400 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain ACL_RS03400 PF02885 Glycosyl transferase family, helical bundle domain ACL_RS03400 PF00591 Glycosyl transferase family, a/b domain ACL_RS03410 PF00300 Histidine phosphatase superfamily (branch 1) ACL_RS03415 PF00999 Sodium/hydrogen exchanger family ACL_RS03435 PF00186 Dihydrofolate reductase ACL_RS03440 PF00303 Thymidylate synthase ACL_RS03445 PF01546 Peptidase family M20/M25/M40 ACL_RS03475 PF01048 Phosphorylase superfamily ACL_RS03480 PF01791 DeoC/LacD family aldolase ACL_RS03490 PF01975 Survival protein SurE ACL_RS03495 PF08264 Anticodon-binding domain of tRNA ACL_RS03495 PF00133 tRNA synthetases class I (I, L, M and V) ACL_RS03500 PF04472 Cell division protein SepF ACL_RS03505 PF01168 Alanine racemase, N-terminal domain ACL_RS03510 PF06071 Protein of unknown function (DUF933) ACL_RS03510 PF01926 50S ribosome-binding GTPase ACL_RS03515 PF12327 FtsZ family, C-terminal domain ACL_RS03515 PF00091 Tubulin/FtsZ family, GTPase domain ACL_RS03520 PF01702 Queuine tRNA-ribosyltransferase ACL_RS03530 PF00633 Helix-hairpin-helix motif ACL_RS03530 PF14815 NUDIX domain ACL_RS03530 PF00730 HhH-GPD superfamily base excision DNA repair protein ACL_RS03535 PF00881 Nitroreductase family ACL_RS03550 PF13419 Haloacid dehalogenase-like hydrolase ACL_RS03555 PF00356 Bacterial regulatory proteins, lacI family ACL_RS03560 PF14310 Fibronectin type III-like domain ACL_RS03560 PF00933 Glycosyl hydrolase family 3 N terminal domain ACL_RS03560 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACL_RS03570 PF00722 Glycosyl hydrolases family 16 ACL_RS03575 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS03580 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS03595 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS03600 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS03615 PF17189 Glycosyl hydrolase family 30 beta sandwich domain ACL_RS03620 PF00722 Glycosyl hydrolases family 16 ACL_RS03635 PF01915 Glycosyl hydrolase family 3 C-terminal domain ACL_RS03635 PF00933 Glycosyl hydrolase family 3 N terminal domain ACL_RS03635 PF14310 Fibronectin type III-like domain ACL_RS03640 PF01323 DSBA-like thioredoxin domain ACL_RS03650 PF08439 Oligopeptidase F ACL_RS03650 PF01432 Peptidase family M3 ACL_RS03660 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS03675 PF01545 Cation efflux family ACL_RS03680 PF03060 Nitronate monooxygenase ACL_RS03685 PF01575 MaoC like domain ACL_RS03690 PF02535 ZIP Zinc transporter ACL_RS03710 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACL_RS03735 PF02583 Metal-sensitive transcriptional repressor ACL_RS03745 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS03745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACL_RS03765 PF01022 Bacterial regulatory protein, arsR family ACL_RS03775 PF00005 ABC transporter ACL_RS03775 PF13732 Domain of unknown function (DUF4162) ACL_RS03790 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ACL_RS03800 PF00248 Aldo/keto reductase family ACL_RS03810 PF05343 M42 glutamyl aminopeptidase ACL_RS03815 PF01554 MatE ACL_RS03850 PF00005 ABC transporter ACL_RS03855 PF00440 Bacterial regulatory proteins, tetR family ACL_RS03855 PF16925 Tetracyclin repressor-like, C-terminal domain ACL_RS03860 PF00291 Pyridoxal-phosphate dependent enzyme ACL_RS03870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACL_RS03870 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS03870 PF00403 Heavy-metal-associated domain ACL_RS03875 PF00403 Heavy-metal-associated domain ACL_RS03880 PF00665 Integrase core domain ACL_RS03880 PF13276 HTH-like domain ACL_RS03880 PF13333 Integrase core domain ACL_RS03900 PF05173 Dihydrodipicolinate reductase, C-terminus ACL_RS03900 PF01113 Dihydrodipicolinate reductase, N-terminus ACL_RS03905 PF00701 Dihydrodipicolinate synthetase family ACL_RS03910 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACL_RS03910 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACL_RS03915 PF13840 ACT domain ACL_RS03915 PF01842 ACT domain ACL_RS03915 PF00696 Amino acid kinase family ACL_RS03920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACL_RS03920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACL_RS03925 PF02872 5'-nucleotidase, C-terminal domain ACL_RS03925 PF17936 Bacterial Ig domain ACL_RS03925 PF00149 Calcineurin-like phosphoesterase ACL_RS03930 PF00563 EAL domain ACL_RS03930 PF03707 Bacterial signalling protein N terminal repeat ACL_RS03930 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS03935 PF00478 IMP dehydrogenase / GMP reductase domain ACL_RS03955 PF01070 FMN-dependent dehydrogenase ACL_RS03960 PF00288 GHMP kinases N terminal domain ACL_RS03960 PF08544 GHMP kinases C terminal ACL_RS03970 PF00288 GHMP kinases N terminal domain ACL_RS03970 PF08544 GHMP kinases C terminal ACL_RS03970 PF10509 Galactokinase galactose-binding signature ACL_RS03975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACL_RS03980 PF04227 Indigoidine synthase A like protein ACL_RS03985 PF00689 Cation transporting ATPase, C-terminus ACL_RS03985 PF00690 Cation transporter/ATPase, N-terminus ACL_RS04000 PF00575 S1 RNA binding domain ACL_RS04000 PF03725 3' exoribonuclease family, domain 2 ACL_RS04000 PF01138 3' exoribonuclease family, domain 1 ACL_RS04000 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACL_RS04005 PF00312 Ribosomal protein S15 ACL_RS04010 PF06153 Cyclic-di-AMP receptor ACL_RS04015 PF01687 Riboflavin kinase ACL_RS04015 PF06574 FAD synthetase ACL_RS04020 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACL_RS04025 PF00085 Thioredoxin ACL_RS04030 PF01713 Smr domain ACL_RS04030 PF00488 MutS domain V ACL_RS04035 PF01351 Ribonuclease HII ACL_RS04040 PF01479 S4 domain ACL_RS04040 PF00849 RNA pseudouridylate synthase ACL_RS04045 PF01252 Signal peptidase (SPase) II ACL_RS04055 PF00004 ATPase family associated with various cellular activities (AAA) ACL_RS04055 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACL_RS04055 PF05362 Lon protease (S16) C-terminal proteolytic domain ACL_RS04060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACL_RS04065 PF01641 SelR domain ACL_RS04065 PF01625 Peptide methionine sulfoxide reductase ACL_RS04065 PF08534 Redoxin ACL_RS04070 PF00152 tRNA synthetases class II (D, K and N) ACL_RS04070 PF01336 OB-fold nucleic acid binding domain ACL_RS04075 PF13393 Histidyl-tRNA synthetase ACL_RS04075 PF03129 Anticodon binding domain ACL_RS04085 PF01594 AI-2E family transporter ACL_RS04090 PF02580 D-Tyr-tRNA(Tyr) deacylase ACL_RS04095 PF02824 TGS domain ACL_RS04095 PF04607 Region found in RelA / SpoT proteins ACL_RS04095 PF13291 ACT domain ACL_RS04100 PF00156 Phosphoribosyl transferase domain ACL_RS04105 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACL_RS04105 PF12002 MgsA AAA+ ATPase C terminal ACL_RS04105 PF16193 AAA C-terminal domain ACL_RS04115 PF00753 Metallo-beta-lactamase superfamily ACL_RS04115 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACL_RS04115 PF17770 Ribonuclease J C-terminal domain ACL_RS04120 PF03838 Recombination protein U ACL_RS04140 PF01145 SPFH domain / Band 7 family ACL_RS04150 PF00483 Nucleotidyl transferase ACL_RS04160 PF00453 Ribosomal protein L20 ACL_RS04165 PF01632 Ribosomal protein L35 ACL_RS04170 PF05198 Translation initiation factor IF-3, N-terminal domain ACL_RS04170 PF00707 Translation initiation factor IF-3, C-terminal domain ACL_RS04175 PF00664 ABC transporter transmembrane region ACL_RS04175 PF00005 ABC transporter ACL_RS04180 PF00664 ABC transporter transmembrane region ACL_RS04180 PF00005 ABC transporter ACL_RS04195 PF00557 Metallopeptidase family M24 ACL_RS04195 PF05195 Aminopeptidase P, N-terminal domain ACL_RS04200 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACL_RS04200 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACL_RS04200 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACL_RS04200 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACL_RS04205 PF03309 Type III pantothenate kinase ACL_RS04210 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACL_RS04210 PF00753 Metallo-beta-lactamase superfamily ACL_RS04215 PF00471 Ribosomal protein L33 ACL_RS04220 PF12848 ABC transporter ACL_RS04220 PF00005 ABC transporter ACL_RS04230 PF00293 NUDIX domain ACL_RS04230 PF09297 NADH pyrophosphatase zinc ribbon domain ACL_RS04230 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ACL_RS04295 PF01725 Ham1 family ACL_RS04300 PF02517 CPBP intramembrane metalloprotease ACL_RS04310 PF00216 Bacterial DNA-binding protein ACL_RS04315 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACL_RS04315 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACL_RS04320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACL_RS04320 PF01926 50S ribosome-binding GTPase ACL_RS04325 PF00575 S1 RNA binding domain ACL_RS04330 PF02224 Cytidylate kinase ACL_RS04335 PF01479 S4 domain ACL_RS04335 PF00849 RNA pseudouridylate synthase ACL_RS04340 PF01132 Elongation factor P (EF-P) OB domain ACL_RS04340 PF09285 Elongation factor P, C-terminal ACL_RS04340 PF08207 Elongation factor P (EF-P) KOW-like domain ACL_RS04345 PF01220 Dehydroquinase class II ACL_RS04350 PF01202 Shikimate kinase ACL_RS04360 PF08676 MutL C terminal dimerisation domain ACL_RS04360 PF01119 DNA mismatch repair protein, C-terminal domain ACL_RS04365 PF05192 MutS domain III ACL_RS04365 PF05190 MutS family domain IV ACL_RS04365 PF01624 MutS domain I ACL_RS04365 PF00488 MutS domain V ACL_RS04375 PF13277 YmdB-like protein ACL_RS04380 PF01966 HD domain ACL_RS04380 PF00013 KH domain ACL_RS04380 PF12072 Domain of unknown function (DUF3552) ACL_RS04390 PF00005 ABC transporter ACL_RS04390 PF00664 ABC transporter transmembrane region ACL_RS04395 PF00005 ABC transporter ACL_RS04395 PF00664 ABC transporter transmembrane region ACL_RS04400 PF00154 recA bacterial DNA recombination protein ACL_RS04405 PF01066 CDP-alcohol phosphatidyltransferase ACL_RS04410 PF01649 Ribosomal protein S20 ACL_RS04415 PF14480 DNA polymerase III polC-type N-terminus I ACL_RS04415 PF00929 Exonuclease ACL_RS04415 PF02811 PHP domain ACL_RS04415 PF11490 DNA polymerase III polC-type N-terminus II ACL_RS04415 PF14579 Helix-hairpin-helix motif ACL_RS04415 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACL_RS04415 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACL_RS04425 PF03772 Competence protein ACL_RS04425 PF00753 Metallo-beta-lactamase superfamily ACL_RS04440 PF01966 HD domain ACL_RS04445 PF01926 50S ribosome-binding GTPase ACL_RS04450 PF13344 Haloacid dehalogenase-like hydrolase ACL_RS04455 PF01272 Transcription elongation factor, GreA/GreB, C-term ACL_RS04455 PF03449 Transcription elongation factor, N-terminal ACL_RS04465 PF01596 O-methyltransferase ACL_RS04470 PF06949 Protein of unknown function (DUF1292) ACL_RS04475 PF03652 Holliday junction resolvase ACL_RS04480 PF02272 DHHA1 domain ACL_RS04480 PF01411 tRNA synthetases class II (A) ACL_RS04480 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACL_RS04485 PF00571 CBS domain ACL_RS04485 PF03471 Transporter associated domain ACL_RS04485 PF01595 Cyclin M transmembrane N-terminal domain ACL_RS04495 PF00563 EAL domain ACL_RS04495 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS04500 PF00999 Sodium/hydrogen exchanger family ACL_RS04515 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS04520 PF01795 MraW methylase family ACL_RS04535 PF00375 Sodium:dicarboxylate symporter family ACL_RS04655 PF00664 ABC transporter transmembrane region ACL_RS04655 PF00005 ABC transporter ACL_RS04660 PF00664 ABC transporter transmembrane region ACL_RS04660 PF00005 ABC transporter ACL_RS04670 PF00140 Sigma-70 factor, region 1.2 ACL_RS04670 PF04539 Sigma-70 region 3 ACL_RS04670 PF03979 Sigma-70 factor, region 1.1 ACL_RS04670 PF04542 Sigma-70 region 2 ACL_RS04670 PF04545 Sigma-70, region 4 ACL_RS04680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACL_RS04680 PF03129 Anticodon binding domain ACL_RS04685 PF11967 Recombination protein O N terminal ACL_RS04685 PF02565 Recombination protein O C terminal ACL_RS04690 PF01926 50S ribosome-binding GTPase ACL_RS04690 PF07650 KH domain ACL_RS04695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACL_RS04700 PF02130 Uncharacterized protein family UPF0054 ACL_RS04705 PF02562 PhoH-like protein ACL_RS04710 PF01165 Ribosomal protein S21 ACL_RS04720 PF03840 Preprotein translocase SecG subunit ACL_RS04725 PF01497 Periplasmic binding protein ACL_RS04730 PF00005 ABC transporter ACL_RS04735 PF01032 FecCD transport family ACL_RS04740 PF01032 FecCD transport family ACL_RS04750 PF00753 Metallo-beta-lactamase superfamily ACL_RS04750 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACL_RS04755 PF02074 Carboxypeptidase Taq (M32) metallopeptidase ACL_RS04760 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACL_RS04760 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACL_RS04765 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ACL_RS04765 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACL_RS04770 PF00571 CBS domain ACL_RS04770 PF03448 MgtE intracellular N domain ACL_RS04770 PF01769 Divalent cation transporter ACL_RS04775 PF03448 MgtE intracellular N domain ACL_RS04775 PF01769 Divalent cation transporter ACL_RS04775 PF00571 CBS domain ACL_RS04780 PF03116 NQR2, RnfD, RnfE family ACL_RS04790 PF02508 Rnf-Nqr subunit, membrane protein ACL_RS04795 PF02508 Rnf-Nqr subunit, membrane protein ACL_RS04800 PF00111 2Fe-2S iron-sulfur cluster binding domain ACL_RS04800 PF00970 Oxidoreductase FAD-binding domain ACL_RS04800 PF00175 Oxidoreductase NAD-binding domain ACL_RS04805 PF01813 ATP synthase subunit D ACL_RS04810 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_RS04810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_RS04815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_RS04815 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_RS04815 PF16886 ATPsynthase alpha/beta subunit N-term extension ACL_RS04840 PF01496 V-type ATPase 116kDa subunit family ACL_RS04855 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_RS04855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_RS04860 PF00231 ATP synthase ACL_RS04865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_RS04865 PF00306 ATP synthase alpha/beta chain, C terminal domain ACL_RS04865 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_RS04870 PF00213 ATP synthase delta (OSCP) subunit ACL_RS04875 PF00430 ATP synthase B/B' CF(0) ACL_RS04880 PF00137 ATP synthase subunit C ACL_RS04885 PF00119 ATP synthase A chain ACL_RS04900 PF01523 Putative modulator of DNA gyrase ACL_RS04905 PF01523 Putative modulator of DNA gyrase ACL_RS04910 PF00664 ABC transporter transmembrane region ACL_RS04910 PF00005 ABC transporter ACL_RS04915 PF00005 ABC transporter ACL_RS04915 PF00664 ABC transporter transmembrane region ACL_RS04935 PF07687 Peptidase dimerisation domain ACL_RS04935 PF01546 Peptidase family M20/M25/M40 ACL_RS04940 PF00248 Aldo/keto reductase family ACL_RS04950 PF09383 NIL domain ACL_RS04950 PF00005 ABC transporter ACL_RS04955 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS04960 PF03180 NLPA lipoprotein ACL_RS04965 PF00924 Mechanosensitive ion channel ACL_RS05015 PF01590 GAF domain ACL_RS05015 PF00360 Phytochrome region ACL_RS05015 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS05015 PF00563 EAL domain ACL_RS05020 PF03707 Bacterial signalling protein N terminal repeat ACL_RS05020 PF00563 EAL domain ACL_RS05020 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS05030 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS05040 PF13614 AAA domain ACL_RS05060 PF02151 UvrB/uvrC motif ACL_RS05060 PF12344 Ultra-violet resistance protein B ACL_RS05060 PF00271 Helicase conserved C-terminal domain ACL_RS05060 PF04851 Type III restriction enzyme, res subunit ACL_RS05060 PF17757 UvrB interaction domain ACL_RS05070 PF02080 TrkA-C domain ACL_RS05070 PF02254 TrkA-N domain ACL_RS05075 PF02386 Cation transport protein ACL_RS05085 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACL_RS05085 PF00056 lactate/malate dehydrogenase, NAD binding domain ACL_RS05120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACL_RS05120 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS05125 PF00132 Bacterial transferase hexapeptide (six repeats) ACL_RS05125 PF00483 Nucleotidyl transferase ACL_RS05130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACL_RS05130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACL_RS05130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACL_RS05130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACL_RS05140 PF02350 UDP-N-acetylglucosamine 2-epimerase ACL_RS05150 PF00534 Glycosyl transferases group 1 ACL_RS05150 PF13439 Glycosyltransferase Family 4 ACL_RS05160 PF02350 UDP-N-acetylglucosamine 2-epimerase ACL_RS05165 PF01370 NAD dependent epimerase/dehydratase family ACL_RS05170 PF08485 Polysaccharide biosynthesis protein C-terminal ACL_RS05170 PF02719 Polysaccharide biosynthesis protein ACL_RS05180 PF13419 Haloacid dehalogenase-like hydrolase ACL_RS05190 PF02397 Bacterial sugar transferase ACL_RS05195 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACL_RS05205 PF16363 GDP-mannose 4,6 dehydratase ACL_RS05210 PF13619 KTSC domain ACL_RS05215 PF01935 Helicase HerA, central domain ACL_RS05215 PF09378 HAS barrel domain ACL_RS05255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACL_RS05255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACL_RS05255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACL_RS05255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACL_RS05275 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS05285 PF01547 Bacterial extracellular solute-binding protein ACL_RS05335 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_RS05335 PF07581 The GLUG motif ACL_RS05350 PF04556 DpnII restriction endonuclease ACL_RS05355 PF01555 DNA methylase ACL_RS05360 PF02086 D12 class N6 adenine-specific DNA methyltransferase ACL_RS05365 PF00239 Resolvase, N terminal domain ACL_RS05365 PF02796 Helix-turn-helix domain of resolvase ACL_RS05370 PF00293 NUDIX domain ACL_RS05375 PF00271 Helicase conserved C-terminal domain ACL_RS05375 PF04851 Type III restriction enzyme, res subunit ACL_RS05385 PF02719 Polysaccharide biosynthesis protein ACL_RS05390 PF02887 Pyruvate kinase, alpha/beta domain ACL_RS05390 PF00224 Pyruvate kinase, barrel domain ACL_RS05390 PF00391 PEP-utilising enzyme, mobile domain ACL_RS05395 PF00365 Phosphofructokinase ACL_RS05400 PF00365 Phosphofructokinase ACL_RS05405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACL_RS05405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACL_RS05415 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ACL_RS05415 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ACL_RS05420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACL_RS05425 PF01475 Ferric uptake regulator family ACL_RS05430 PF00950 ABC 3 transport family ACL_RS05435 PF00005 ABC transporter ACL_RS05445 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACL_RS05445 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACL_RS05455 PF00005 ABC transporter ACL_RS05455 PF12848 ABC transporter ACL_RS05460 PF04172 LrgB-like family ACL_RS05465 PF03788 LrgA family ACL_RS05470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACL_RS05470 PF01872 RibD C-terminal domain ACL_RS05475 PF01012 Electron transfer flavoprotein domain ACL_RS05475 PF00766 Electron transfer flavoprotein FAD-binding domain ACL_RS05480 PF01012 Electron transfer flavoprotein domain ACL_RS05485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ACL_RS05485 PF02770 Acyl-CoA dehydrogenase, middle domain ACL_RS05485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ACL_RS05490 PF13545 Crp-like helix-turn-helix domain ACL_RS05490 PF00027 Cyclic nucleotide-binding domain ACL_RS05505 PF03601 Conserved hypothetical protein 698 ACL_RS05535 PF07581 The GLUG motif ACL_RS05535 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_RS05540 PF06445 GyrI-like small molecule binding domain ACL_RS05540 PF12833 Helix-turn-helix domain ACL_RS05555 PF17773 UPF0176 acylphosphatase like domain ACL_RS05555 PF12368 Rhodanase C-terminal ACL_RS05555 PF00581 Rhodanese-like domain ACL_RS05560 PF10431 C-terminal, D2-small domain, of ClpB protein ACL_RS05560 PF02861 Clp amino terminal domain, pathogenicity island component ACL_RS05560 PF17871 AAA lid domain ACL_RS05560 PF07724 AAA domain (Cdc48 subfamily) ACL_RS05560 PF00004 ATPase family associated with various cellular activities (AAA) ACL_RS05565 PF02541 Ppx/GppA phosphatase family ACL_RS05575 PF00563 EAL domain ACL_RS05575 PF13426 PAS domain ACL_RS05575 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS05595 PF00403 Heavy-metal-associated domain ACL_RS05600 PF00403 Heavy-metal-associated domain ACL_RS05625 PF01965 DJ-1/PfpI family ACL_RS05635 PF00485 Phosphoribulokinase / Uridine kinase family ACL_RS05690 PF01255 Putative undecaprenyl diphosphate synthase ACL_RS05695 PF01063 Amino-transferase class IV ACL_RS05710 PF01765 Ribosome recycling factor ACL_RS05715 PF00696 Amino acid kinase family ACL_RS05720 PF00889 Elongation factor TS ACL_RS05725 PF07498 Rho termination factor, N-terminal domain ACL_RS05725 PF00318 Ribosomal protein S2 ACL_RS05730 PF00692 dUTPase ACL_RS05735 PF00293 NUDIX domain ACL_RS05740 PF00589 Phage integrase family ACL_RS05740 PF02899 Phage integrase, N-terminal SAM-like domain ACL_RS05745 PF01134 Glucose inhibited division protein A ACL_RS05750 PF00230 Major intrinsic protein ACL_RS05765 PF03167 Uracil DNA glycosylase superfamily ACL_RS05775 PF01813 ATP synthase subunit D ACL_RS05780 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_RS05780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_RS05785 PF16886 ATPsynthase alpha/beta subunit N-term extension ACL_RS05785 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACL_RS05785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACL_RS05805 PF01496 V-type ATPase 116kDa subunit family ACL_RS05820 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACL_RS05820 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACL_RS05840 PF03960 ArsC family ACL_RS05845 PF01432 Peptidase family M3 ACL_RS05845 PF08439 Oligopeptidase F ACL_RS05850 PF00579 tRNA synthetases class I (W and Y) ACL_RS05855 PF00563 EAL domain ACL_RS05855 PF03707 Bacterial signalling protein N terminal repeat ACL_RS05855 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS05860 PF00781 Diacylglycerol kinase catalytic domain ACL_RS05865 PF00579 tRNA synthetases class I (W and Y) ACL_RS05865 PF01479 S4 domain ACL_RS05870 PF00356 Bacterial regulatory proteins, lacI family ACL_RS05875 PF01245 Ribosomal protein L19 ACL_RS05880 PF01746 tRNA (Guanine-1)-methyltransferase ACL_RS05885 PF05239 PRC-barrel domain ACL_RS05885 PF01782 RimM N-terminal domain ACL_RS05895 PF00886 Ribosomal protein S16 ACL_RS05905 PF00849 RNA pseudouridylate synthase ACL_RS05905 PF01479 S4 domain ACL_RS05910 PF01327 Polypeptide deformylase ACL_RS05925 PF00588 SpoU rRNA Methylase family ACL_RS05925 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACL_RS05930 PF02926 THUMP domain ACL_RS05930 PF02568 Thiamine biosynthesis protein (ThiI) ACL_RS05935 PF13185 GAF domain ACL_RS05940 PF01479 S4 domain ACL_RS05940 PF00163 Ribosomal protein S4/S9 N-terminal domain ACL_RS05945 PF02585 GlcNAc-PI de-N-acetylase ACL_RS05960 PF13192 Thioredoxin domain ACL_RS05960 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS05970 PF00121 Triosephosphate isomerase ACL_RS05975 PF00381 PTS HPr component phosphorylation site ACL_RS05980 PF01381 Helix-turn-helix ACL_RS05985 PF00162 Phosphoglycerate kinase ACL_RS06005 PF01458 Uncharacterized protein family (UPF0051) ACL_RS06010 PF01592 NifU-like N terminal domain ACL_RS06015 PF00266 Aminotransferase class-V ACL_RS06020 PF01458 Uncharacterized protein family (UPF0051) ACL_RS06025 PF00005 ABC transporter ACL_RS06035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACL_RS06035 PF00005 ABC transporter ACL_RS06040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACL_RS06040 PF00005 ABC transporter ACL_RS06050 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06080 PF03590 Aspartate-ammonia ligase ACL_RS06105 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ACL_RS06120 PF00005 ABC transporter ACL_RS06125 PF00664 ABC transporter transmembrane region ACL_RS06125 PF00005 ABC transporter ACL_RS06130 PF00005 ABC transporter ACL_RS06130 PF00664 ABC transporter transmembrane region ACL_RS06175 PF00118 TCP-1/cpn60 chaperonin family ACL_RS06180 PF00166 Chaperonin 10 Kd subunit ACL_RS06190 PF00005 ABC transporter ACL_RS06195 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06210 PF13087 AAA domain ACL_RS06210 PF13195 Protein of unknown function (DUF4011) ACL_RS06210 PF13086 AAA domain ACL_RS06230 PF00403 Heavy-metal-associated domain ACL_RS06235 PF01022 Bacterial regulatory protein, arsR family ACL_RS06260 PF00817 impB/mucB/samB family ACL_RS06260 PF11799 impB/mucB/samB family C-terminal domain ACL_RS06260 PF11798 IMS family HHH motif ACL_RS06295 PF02384 N-6 DNA Methylase ACL_RS06340 PF00690 Cation transporter/ATPase, N-terminus ACL_RS06340 PF00689 Cation transporting ATPase, C-terminus ACL_RS06345 PF00704 Glycosyl hydrolases family 18 ACL_RS06350 PF08402 TOBE domain ACL_RS06350 PF00005 ABC transporter ACL_RS06355 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06360 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06380 PF00268 Ribonucleotide reductase, small chain ACL_RS06385 PF00317 Ribonucleotide reductase, all-alpha domain ACL_RS06385 PF08343 Ribonucleotide reductase N-terminal ACL_RS06385 PF02867 Ribonucleotide reductase, barrel domain ACL_RS06390 PF07972 NrdI Flavodoxin like ACL_RS06395 PF04055 Radical SAM superfamily ACL_RS06400 PF13597 Anaerobic ribonucleoside-triphosphate reductase ACL_RS06400 PF03477 ATP cone domain ACL_RS06420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACL_RS06420 PF00512 His Kinase A (phospho-acceptor) domain ACL_RS06420 PF00989 PAS fold ACL_RS06420 PF16736 Single Cache-like ACL_RS06425 PF00072 Response regulator receiver domain ACL_RS06425 PF00486 Transcriptional regulatory protein, C terminal ACL_RS06430 PF01895 PhoU domain ACL_RS06435 PF00005 ABC transporter ACL_RS06440 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06445 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06460 PF00005 ABC transporter ACL_RS06465 PF00781 Diacylglycerol kinase catalytic domain ACL_RS06470 PF03099 Biotin/lipoate A/B protein ligase family ACL_RS06470 PF10437 Bacterial lipoate protein ligase C-terminus ACL_RS06480 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS06485 PF02817 e3 binding domain ACL_RS06485 PF00364 Biotin-requiring enzyme ACL_RS06485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACL_RS06490 PF02780 Transketolase, C-terminal domain ACL_RS06490 PF02779 Transketolase, pyrimidine binding domain ACL_RS06495 PF00676 Dehydrogenase E1 component ACL_RS06500 PF02661 Fic/DOC family ACL_RS06515 PF00491 Arginase family ACL_RS06520 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ACL_RS06520 PF01276 Orn/Lys/Arg decarboxylase, major domain ACL_RS06535 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) ACL_RS06535 PF07581 The GLUG motif ACL_RS06540 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACL_RS06540 PF00925 GTP cyclohydrolase II ACL_RS06555 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06560 PF00005 ABC transporter ACL_RS06570 PF00348 Polyprenyl synthetase ACL_RS06575 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS06575 PF08448 PAS fold ACL_RS06580 PF00171 Aldehyde dehydrogenase family ACL_RS06585 PF01699 Sodium/calcium exchanger protein ACL_RS06595 PF10397 Adenylosuccinate lyase C-terminus ACL_RS06595 PF00206 Lyase ACL_RS06600 PF00171 Aldehyde dehydrogenase family ACL_RS06625 PF16921 Tex protein YqgF-like domain ACL_RS06625 PF09371 Tex-like protein N-terminal domain ACL_RS06625 PF17674 HHH domain ACL_RS06625 PF00575 S1 RNA binding domain ACL_RS06635 PF01648 4'-phosphopantetheinyl transferase superfamily ACL_RS06640 PF10298 WhiA N-terminal LAGLIDADG-like domain ACL_RS06640 PF14527 WhiA LAGLIDADG-like domain ACL_RS06640 PF02650 WhiA C-terminal HTH domain ACL_RS06645 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACL_RS06655 PF07475 HPr Serine kinase C-terminal domain ACL_RS06655 PF02603 HPr Serine kinase N terminus ACL_RS06665 PF17760 UvrA interaction domain ACL_RS06665 PF00005 ABC transporter ACL_RS06665 PF17755 UvrA DNA-binding domain ACL_RS06670 PF12826 Helix-hairpin-helix motif ACL_RS06670 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACL_RS06670 PF03120 NAD-dependent DNA ligase OB-fold domain ACL_RS06670 PF00533 BRCA1 C Terminus (BRCT) domain ACL_RS06670 PF01653 NAD-dependent DNA ligase adenylation domain ACL_RS06675 PF13361 UvrD-like helicase C-terminal domain ACL_RS06675 PF00580 UvrD/REP helicase N-terminal domain ACL_RS06685 PF13361 UvrD-like helicase C-terminal domain ACL_RS06685 PF00580 UvrD/REP helicase N-terminal domain ACL_RS06690 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACL_RS06690 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ACL_RS06700 PF00814 Glycoprotease family ACL_RS06710 PF00814 Glycoprotease family ACL_RS06715 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACL_RS06720 PF00342 Phosphoglucose isomerase ACL_RS06725 PF00575 S1 RNA binding domain ACL_RS06740 PF02681 Divergent PAP2 family ACL_RS06745 PF01106 NifU-like domain ACL_RS06755 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACL_RS06765 PF02457 DisA bacterial checkpoint controller nucleotide-binding ACL_RS06770 PF01638 HxlR-like helix-turn-helix ACL_RS06775 PF13167 GTP-binding GTPase N-terminal ACL_RS06775 PF01926 50S ribosome-binding GTPase ACL_RS06775 PF16360 GTP-binding GTPase Middle Region ACL_RS06780 PF00860 Permease family ACL_RS06790 PF01156 Inosine-uridine preferring nucleoside hydrolase ACL_RS06795 PF00294 pfkB family carbohydrate kinase ACL_RS06805 PF00356 Bacterial regulatory proteins, lacI family ACL_RS06810 PF00860 Permease family ACL_RS06815 PF01207 Dihydrouridine synthase (Dus) ACL_RS06820 PF01430 Hsp33 protein ACL_RS06840 PF02545 Maf-like protein ACL_RS06845 PF11734 TilS substrate C-terminal domain ACL_RS06845 PF01171 PP-loop family ACL_RS06850 PF11734 TilS substrate C-terminal domain ACL_RS06850 PF01171 PP-loop family ACL_RS06850 PF00156 Phosphoribosyl transferase domain ACL_RS06855 PF17862 AAA+ lid domain ACL_RS06855 PF00004 ATPase family associated with various cellular activities (AAA) ACL_RS06855 PF01434 Peptidase family M41 ACL_RS06860 PF01479 S4 domain ACL_RS06865 PF01336 OB-fold nucleic acid binding domain ACL_RS06865 PF00152 tRNA synthetases class II (D, K and N) ACL_RS06885 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACL_RS06885 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACL_RS06890 PF08331 Domain of unknown function (DUF1730) ACL_RS06900 PF01116 Fructose-bisphosphate aldolase class-II ACL_RS06905 PF06418 CTP synthase N-terminus ACL_RS06905 PF00117 Glutamine amidotransferase class-I ACL_RS06925 PF02132 RecR protein ACL_RS06925 PF13662 Toprim domain ACL_RS06930 PF02575 YbaB/EbfC DNA-binding family ACL_RS06935 PF12169 DNA polymerase III subunits gamma and tau domain III ACL_RS06940 PF01926 50S ribosome-binding GTPase ACL_RS06940 PF12631 MnmE helical domain ACL_RS06940 PF10396 GTP-binding protein TrmE N-terminus ACL_RS06945 PF02308 MgtC family ACL_RS06950 PF02272 DHHA1 domain ACL_RS06950 PF01368 DHH family ACL_RS06955 PF02272 DHHA1 domain ACL_RS06955 PF01368 DHH family ACL_RS06980 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS06985 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS07005 PF01593 Flavin containing amine oxidoreductase ACL_RS07015 PF00005 ABC transporter ACL_RS07020 PF02687 FtsX-like permease family ACL_RS07025 PF00255 Glutathione peroxidase ACL_RS07030 PF00072 Response regulator receiver domain ACL_RS07030 PF04397 LytTr DNA-binding domain ACL_RS07045 PF02645 Uncharacterised protein, DegV family COG1307 ACL_RS07060 PF00152 tRNA synthetases class II (D, K and N) ACL_RS07060 PF01336 OB-fold nucleic acid binding domain ACL_RS07065 PF02646 RmuC family ACL_RS07075 PF14804 Jag N-terminus ACL_RS07075 PF01424 R3H domain ACL_RS07085 PF00825 Ribonuclease P ACL_RS07090 PF00468 Ribosomal protein L34 ACL_RS07105 PF02361 Cobalt transport protein ACL_RS07110 PF09115 DNA polymerase III, delta subunit, C terminal ACL_RS07115 PF00990 Diguanylate cyclase, GGDEF domain ACL_RS07125 PF04231 Endonuclease I ACL_RS07135 PF02464 Competence-damaged protein ACL_RS07135 PF18146 Damage-inducible protein CinA KH domain ACL_RS07135 PF00994 Probable molybdopterin binding domain ACL_RS07140 PF01743 Poly A polymerase head domain ACL_RS07140 PF12627 Probable RNA and SrmB- binding site of polymerase A ACL_RS07140 PF13735 tRNA nucleotidyltransferase domain 2 putative ACL_RS07150 PF02638 Glycosyl hydrolase-like 10 ACL_RS07170 PF07722 Peptidase C26 ACL_RS07175 PF04397 LytTr DNA-binding domain ACL_RS07175 PF00072 Response regulator receiver domain ACL_RS07180 PF00005 ABC transporter ACL_RS07185 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACL_RS07185 PF06827 Zinc finger found in FPG and IleRS ACL_RS07185 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACL_RS07190 PF01695 IstB-like ATP binding protein ACL_RS07190 PF07319 Primosomal protein DnaI N-terminus ACL_RS07205 PF02368 Bacterial Ig-like domain (group 2) ACL_RS07235 PF12102 Domain of unknown function (DUF3578) ACL_RS07235 PF07728 AAA domain (dynein-related subfamily) ACL_RS07240 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS07245 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS07250 PF00072 Response regulator receiver domain ACL_RS07250 PF01966 HD domain ACL_RS07260 PF12704 MacB-like periplasmic core domain ACL_RS07260 PF02687 FtsX-like permease family ACL_RS07260 PF00005 ABC transporter ACL_RS07265 PF12704 MacB-like periplasmic core domain ACL_RS07265 PF02687 FtsX-like permease family ACL_RS07265 PF00005 ABC transporter ACL_RS07280 PF13276 HTH-like domain ACL_RS07280 PF01527 Transposase ACL_RS07280 PF00665 Integrase core domain ACL_RS07280 PF13333 Integrase core domain ACL_RS07290 PF00005 ABC transporter ACL_RS07290 PF00664 ABC transporter transmembrane region ACL_RS07295 PF10410 DnaB-helicase binding domain of primase ACL_RS07295 PF08275 DNA primase catalytic core, N-terminal domain ACL_RS07295 PF01807 CHC2 zinc finger ACL_RS07315 PF01048 Phosphorylase superfamily ACL_RS07320 PF13180 PDZ domain ACL_RS07320 PF02163 Peptidase family M50 ACL_RS07330 PF12911 N-terminal TM domain of oligopeptide transport permease C ACL_RS07330 PF00528 Binding-protein-dependent transport system inner membrane component ACL_RS07345 PF01381 Helix-turn-helix ACL_RS07355 PF01790 Prolipoprotein diacylglyceryl transferase ACL_RS07360 PF00005 ABC transporter ACL_RS07365 PF02096 60Kd inner membrane protein