APT56_RS00080	PWY-381	nitrate reduction II (assimilatory)
APT56_RS00080	PWY-5675	nitrate reduction V (assimilatory)
APT56_RS00080	PWY-6549	L-glutamine biosynthesis III
APT56_RS00080	PWY-6963	ammonia assimilation cycle I
APT56_RS00080	PWY-6964	ammonia assimilation cycle II
APT56_RS00120	PWY-6936	seleno-amino acid biosynthesis
APT56_RS00560	PWY-6654	phosphopantothenate biosynthesis III
APT56_RS00595	PWY-6167	flavin biosynthesis II (archaea)
APT56_RS00595	PWY-6168	flavin biosynthesis III (fungi)
APT56_RS00615	PWY-5101	L-isoleucine biosynthesis II
APT56_RS00615	PWY-5103	L-isoleucine biosynthesis III
APT56_RS00615	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS00615	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT56_RS00615	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT56_RS00615	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT56_RS00615	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS00670	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS00820	PWY-4381	fatty acid biosynthesis initiation I
APT56_RS00820	PWY-5743	3-hydroxypropanoate cycle
APT56_RS00820	PWY-5744	glyoxylate assimilation
APT56_RS00820	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS00820	PWY-6679	jadomycin biosynthesis
APT56_RS00820	PWY-6722	candicidin biosynthesis
APT56_RS00820	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT56_RS00880	PWY-6936	seleno-amino acid biosynthesis
APT56_RS00950	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS00955	PWY-6871	3-methylbutanol biosynthesis
APT56_RS01145	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS01145	PWY-6692	Fe(II) oxidation
APT56_RS01145	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
APT56_RS01145	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS01235	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS01235	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS01280	PWY-723	alkylnitronates degradation
APT56_RS01365	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT56_RS01400	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS01400	PWY-4521	arsenite oxidation I (respiratory)
APT56_RS01400	PWY-6692	Fe(II) oxidation
APT56_RS01400	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS01460	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT56_RS01460	PWY-5667	CDP-diacylglycerol biosynthesis I
APT56_RS01460	PWY-6453	stigma estolide biosynthesis
APT56_RS01460	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
APT56_RS01460	PWY-7587	oleate biosynthesis III (cyanobacteria)
APT56_RS01470	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
APT56_RS01485	PWY-6749	CMP-legionaminate biosynthesis I
APT56_RS01505	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT56_RS01505	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT56_RS01505	PWY-6936	seleno-amino acid biosynthesis
APT56_RS01505	PWY-702	L-methionine biosynthesis II
APT56_RS01515	PWY-2201	folate transformations I
APT56_RS01515	PWY-3841	folate transformations II
APT56_RS01540	PWY-5316	nicotine biosynthesis
APT56_RS01540	PWY-7342	superpathway of nicotine biosynthesis
APT56_RS01545	PWY-5316	nicotine biosynthesis
APT56_RS01545	PWY-7342	superpathway of nicotine biosynthesis
APT56_RS01575	PWY-6654	phosphopantothenate biosynthesis III
APT56_RS01590	PWY-40	putrescine biosynthesis I
APT56_RS01590	PWY-6305	putrescine biosynthesis IV
APT56_RS01645	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT56_RS01645	PWY-3162	L-tryptophan degradation V (side chain pathway)
APT56_RS01645	PWY-5057	L-valine degradation II
APT56_RS01645	PWY-5076	L-leucine degradation III
APT56_RS01645	PWY-5078	L-isoleucine degradation II
APT56_RS01645	PWY-5079	L-phenylalanine degradation III
APT56_RS01645	PWY-5082	L-methionine degradation III
APT56_RS01645	PWY-5480	pyruvate fermentation to ethanol I
APT56_RS01645	PWY-5486	pyruvate fermentation to ethanol II
APT56_RS01645	PWY-5751	phenylethanol biosynthesis
APT56_RS01645	PWY-6313	serotonin degradation
APT56_RS01645	PWY-6333	acetaldehyde biosynthesis I
APT56_RS01645	PWY-6342	noradrenaline and adrenaline degradation
APT56_RS01645	PWY-6454	vancomycin resistance I
APT56_RS01645	PWY-6587	pyruvate fermentation to ethanol III
APT56_RS01645	PWY-6802	salidroside biosynthesis
APT56_RS01645	PWY-6871	3-methylbutanol biosynthesis
APT56_RS01645	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS01645	PWY-7013	L-1,2-propanediol degradation
APT56_RS01645	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS01645	PWY-7118	chitin degradation to ethanol
APT56_RS01645	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT56_RS01665	PWY-5028	L-histidine degradation II
APT56_RS01665	PWY-5030	L-histidine degradation III
APT56_RS01675	PWY-5028	L-histidine degradation II
APT56_RS01675	PWY-5030	L-histidine degradation III
APT56_RS01685	PWY-5028	L-histidine degradation II
APT56_RS01685	PWY-5030	L-histidine degradation III
APT56_RS01850	PWY-7723	APT56_RS01850
APT56_RS01980	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APT56_RS02030	PWY-5958	acridone alkaloid biosynthesis
APT56_RS02030	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT56_RS02030	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT56_RS02035	PWY-5958	acridone alkaloid biosynthesis
APT56_RS02035	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT56_RS02035	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT56_RS02040	PWY-181	photorespiration
APT56_RS02045	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT56_RS02045	PWY-5723	Rubisco shunt
APT56_RS02080	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT56_RS02080	PWY-6148	tetrahydromethanopterin biosynthesis
APT56_RS02080	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT56_RS02080	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT56_RS02090	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APT56_RS02100	PWY-5033	nicotinate degradation II
APT56_RS02100	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS02100	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS02100	PWY-6993	nicotine degradation II (pyrrolidine pathway)
APT56_RS02100	PWY-7128	nicotine degradation III (VPP pathway)
APT56_RS02100	PWY-722	nicotinate degradation I
APT56_RS02170	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS02180	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS02195	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT56_RS02195	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT56_RS02320	PWY-723	alkylnitronates degradation
APT56_RS02340	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS02340	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS02340	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS02340	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS02340	PWY-5177	glutaryl-CoA degradation
APT56_RS02340	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS02340	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS02340	PWY-6583	pyruvate fermentation to butanol I
APT56_RS02340	PWY-6863	pyruvate fermentation to hexanol
APT56_RS02340	PWY-6883	pyruvate fermentation to butanol II
APT56_RS02340	PWY-6944	androstenedione degradation
APT56_RS02340	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS02340	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS02340	PWY-7007	methyl ketone biosynthesis
APT56_RS02340	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS02340	PWY-7094	fatty acid salvage
APT56_RS02340	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS02340	PWY-735	jasmonic acid biosynthesis
APT56_RS02340	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS02340	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS02340	PWY-7726	APT56_RS02340
APT56_RS02450	PWY-6840	homoglutathione biosynthesis
APT56_RS02450	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT56_RS02515	PWY-5344	L-homocysteine biosynthesis
APT56_RS02635	PWY-5839	menaquinol-7 biosynthesis
APT56_RS02635	PWY-5844	menaquinol-9 biosynthesis
APT56_RS02635	PWY-5849	menaquinol-6 biosynthesis
APT56_RS02635	PWY-5890	menaquinol-10 biosynthesis
APT56_RS02635	PWY-5891	menaquinol-11 biosynthesis
APT56_RS02635	PWY-5892	menaquinol-12 biosynthesis
APT56_RS02635	PWY-5895	menaquinol-13 biosynthesis
APT56_RS02675	PWY-6910	hydroxymethylpyrimidine salvage
APT56_RS02675	PWY-7356	thiamin salvage IV (yeast)
APT56_RS02675	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT56_RS02680	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS02680	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS02695	PWY-2201	folate transformations I
APT56_RS02695	PWY-3841	folate transformations II
APT56_RS02735	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS02735	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS02735	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS02735	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS02735	PWY-5723	Rubisco shunt
APT56_RS02735	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS02735	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS02735	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS02735	PWY-7003	glycerol degradation to butanol
APT56_RS02735	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS02735	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS02740	PWY-6531	mannitol cycle
APT56_RS02745	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS02840	PWY-3461	L-tyrosine biosynthesis II
APT56_RS02840	PWY-3462	L-phenylalanine biosynthesis II
APT56_RS02840	PWY-6120	L-tyrosine biosynthesis III
APT56_RS02840	PWY-6627	salinosporamide A biosynthesis
APT56_RS02840	PWY-7626	bacilysin biosynthesis
APT56_RS02870	PWY-4261	glycerol degradation I
APT56_RS02985	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT56_RS02985	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT56_RS02985	PWY-6897	thiamin salvage II
APT56_RS02985	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APT56_RS02985	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APT56_RS02985	PWY-7356	thiamin salvage IV (yeast)
APT56_RS02985	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT56_RS02995	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS03140	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT56_RS03145	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT56_RS03145	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT56_RS03145	PWY-6897	thiamin salvage II
APT56_RS03145	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
APT56_RS03145	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
APT56_RS03145	PWY-7356	thiamin salvage IV (yeast)
APT56_RS03145	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT56_RS03235	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS03290	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS03290	PWY-6416	quinate degradation II
APT56_RS03290	PWY-6707	gallate biosynthesis
APT56_RS03360	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT56_RS03360	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS03360	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT56_RS03360	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT56_RS03360	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS03360	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS03360	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS03360	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT56_RS03365	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT56_RS03365	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS03365	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT56_RS03365	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT56_RS03365	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS03365	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS03365	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS03365	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT56_RS03405	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT56_RS03410	PWY-5392	reductive TCA cycle II
APT56_RS03410	PWY-5537	pyruvate fermentation to acetate V
APT56_RS03410	PWY-5538	pyruvate fermentation to acetate VI
APT56_RS03410	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS03410	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS03410	PWY-6728	methylaspartate cycle
APT56_RS03410	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS03410	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT56_RS03490	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS03490	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS03530	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS03530	PWY-181	photorespiration
APT56_RS03530	PWY-2161	folate polyglutamylation
APT56_RS03530	PWY-2201	folate transformations I
APT56_RS03530	PWY-3661	glycine betaine degradation I
APT56_RS03530	PWY-3661-1	glycine betaine degradation II (mammalian)
APT56_RS03530	PWY-3841	folate transformations II
APT56_RS03530	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS03550	PWY-5525	D-glucuronate degradation I
APT56_RS03630	PWY-6840	homoglutathione biosynthesis
APT56_RS03630	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT56_RS03755	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS03830	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS03855	PWY-5316	nicotine biosynthesis
APT56_RS03855	PWY-5381	pyridine nucleotide cycling (plants)
APT56_RS03855	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT56_RS03855	PWY-7342	superpathway of nicotine biosynthesis
APT56_RS03875	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT56_RS03875	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT56_RS03875	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT56_RS03875	PWY-6113	superpathway of mycolate biosynthesis
APT56_RS03875	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT56_RS03875	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT56_RS03875	PWY-7663	gondoate biosynthesis (anaerobic)
APT56_RS03875	PWY-7664	oleate biosynthesis IV (anaerobic)
APT56_RS03875	PWYG-321	mycolate biosynthesis
APT56_RS03885	PWY-5386	methylglyoxal degradation I
APT56_RS04175	PWY-4041	&gamma;-glutamyl cycle
APT56_RS04175	PWY-5826	hypoglycin biosynthesis
APT56_RS04215	PWY-5101	L-isoleucine biosynthesis II
APT56_RS04215	PWY-5103	L-isoleucine biosynthesis III
APT56_RS04215	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS04215	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS04285	PWY-5686	UMP biosynthesis
APT56_RS04305	PWY-2201	folate transformations I
APT56_RS04320	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS04320	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS04325	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT56_RS04325	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT56_RS04325	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT56_RS04330	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS04330	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS04340	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT56_RS04340	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
APT56_RS04340	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT56_RS04340	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT56_RS04345	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS04345	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS04350	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS04350	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS04370	PWY-2201	folate transformations I
APT56_RS04370	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS04410	PWY-5331	taurine biosynthesis
APT56_RS04465	PWY-2301	<i>myo</i>-inositol biosynthesis
APT56_RS04465	PWY-4702	phytate degradation I
APT56_RS04465	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APT56_RS04600	PWY-7158	L-phenylalanine degradation V
APT56_RS04655	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS04655	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS04655	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS04655	PWY-5723	Rubisco shunt
APT56_RS04655	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS04655	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS04655	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS04655	PWY-7003	glycerol degradation to butanol
APT56_RS04655	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS04655	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS04675	PWY-5386	methylglyoxal degradation I
APT56_RS04680	PWY-6832	2-aminoethylphosphonate degradation II
APT56_RS04715	PWY-5392	reductive TCA cycle II
APT56_RS04715	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT56_RS04715	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS04715	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS04715	PWY-6728	methylaspartate cycle
APT56_RS04715	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS04715	PWY-7254	TCA cycle VII (acetate-producers)
APT56_RS04715	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT56_RS04755	PWY-723	alkylnitronates degradation
APT56_RS04820	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT56_RS04820	PWY-6148	tetrahydromethanopterin biosynthesis
APT56_RS04820	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
APT56_RS04820	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT56_RS04840	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT56_RS04840	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT56_RS04840	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT56_RS04850	PWY-2781	<i>cis</i>-zeatin biosynthesis
APT56_RS04875	PWY-5392	reductive TCA cycle II
APT56_RS04875	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT56_RS04875	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS04875	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS04875	PWY-6728	methylaspartate cycle
APT56_RS04875	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS04875	PWY-7254	TCA cycle VII (acetate-producers)
APT56_RS04875	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT56_RS04895	PWY-4041	&gamma;-glutamyl cycle
APT56_RS04895	PWY-5826	hypoglycin biosynthesis
APT56_RS04925	PWY-2201	folate transformations I
APT56_RS04925	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS04940	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT56_RS04940	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT56_RS05030	PWY-5958	acridone alkaloid biosynthesis
APT56_RS05030	PWY-6543	4-aminobenzoate biosynthesis
APT56_RS05030	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
APT56_RS05030	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
APT56_RS05045	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS05045	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APT56_RS05045	PWY-7242	D-fructuronate degradation
APT56_RS05045	PWY-7310	D-glucosaminate degradation
APT56_RS05045	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APT56_RS05090	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS05090	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS05090	PWY-7717	APT56_RS05090
APT56_RS05090	PWY-7733	APT56_RS05090
APT56_RS05090	PWY-7734	APT56_RS05090
APT56_RS05240	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT56_RS05300	PWY-6123	inosine-5'-phosphate biosynthesis I
APT56_RS05300	PWY-6124	inosine-5'-phosphate biosynthesis II
APT56_RS05300	PWY-7234	inosine-5'-phosphate biosynthesis III
APT56_RS05355	PWY-3801	sucrose degradation II (sucrose synthase)
APT56_RS05355	PWY-6527	stachyose degradation
APT56_RS05355	PWY-7238	sucrose biosynthesis II
APT56_RS05355	PWY-7343	UDP-glucose biosynthesis
APT56_RS05380	PWY-5057	L-valine degradation II
APT56_RS05380	PWY-5076	L-leucine degradation III
APT56_RS05380	PWY-5078	L-isoleucine degradation II
APT56_RS05380	PWY-5101	L-isoleucine biosynthesis II
APT56_RS05380	PWY-5103	L-isoleucine biosynthesis III
APT56_RS05380	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS05380	PWY-5108	L-isoleucine biosynthesis V
APT56_RS05450	PWY-5686	UMP biosynthesis
APT56_RS05540	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS05540	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS05545	PWY-2941	L-lysine biosynthesis II
APT56_RS05545	PWY-2942	L-lysine biosynthesis III
APT56_RS05545	PWY-5097	L-lysine biosynthesis VI
APT56_RS05565	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT56_RS05565	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT56_RS05565	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT56_RS05655	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS05655	PWY-6549	L-glutamine biosynthesis III
APT56_RS05655	PWY-6728	methylaspartate cycle
APT56_RS05655	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS05655	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS05655	PWY-7254	TCA cycle VII (acetate-producers)
APT56_RS05655	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT56_RS05670	PWY-2941	L-lysine biosynthesis II
APT56_RS05670	PWY-2942	L-lysine biosynthesis III
APT56_RS05670	PWY-5097	L-lysine biosynthesis VI
APT56_RS05790	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS05805	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
APT56_RS05835	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS05835	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS05835	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS05835	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS05835	PWY-5723	Rubisco shunt
APT56_RS05835	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS05835	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS05835	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS05835	PWY-7003	glycerol degradation to butanol
APT56_RS05835	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS05835	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS05875	PWY-5101	L-isoleucine biosynthesis II
APT56_RS05875	PWY-5103	L-isoleucine biosynthesis III
APT56_RS05875	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS05875	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT56_RS05875	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT56_RS05875	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT56_RS05875	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS05880	PWY-5101	L-isoleucine biosynthesis II
APT56_RS05880	PWY-5103	L-isoleucine biosynthesis III
APT56_RS05880	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS05880	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
APT56_RS05880	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
APT56_RS05880	PWY-6389	(<i>S</i>)-acetoin biosynthesis
APT56_RS05880	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS05885	PWY-5103	L-isoleucine biosynthesis III
APT56_RS05885	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS05890	PWY-5669	phosphatidylethanolamine biosynthesis I
APT56_RS06020	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS06020	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS06020	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS06020	PWY-7003	glycerol degradation to butanol
APT56_RS06350	PWY-4041	&gamma;-glutamyl cycle
APT56_RS06350	PWY-5826	hypoglycin biosynthesis
APT56_RS06355	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT56_RS06355	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT56_RS06355	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
APT56_RS06450	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS06450	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT56_RS06450	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
APT56_RS06450	PWY-6692	Fe(II) oxidation
APT56_RS06480	PWY-7560	methylerythritol phosphate pathway II
APT56_RS06485	PWY-7560	methylerythritol phosphate pathway II
APT56_RS06515	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APT56_RS06515	PWY-5368	dimorphecolate biosynthesis
APT56_RS06515	PWY-5995	linoleate biosynthesis I (plants)
APT56_RS06515	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APT56_RS06515	PWY-6803	phosphatidylcholine acyl editing
APT56_RS06515	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APT56_RS06515	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APT56_RS06515	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APT56_RS06515	PWY-7470	phosphatidylcholine biosynthesis VII
APT56_RS06515	PWY-7618	ricinoleate biosynthesis
APT56_RS06670	PWY-5381	pyridine nucleotide cycling (plants)
APT56_RS06700	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS06715	PWY-4381	fatty acid biosynthesis initiation I
APT56_RS06715	PWY-5743	3-hydroxypropanoate cycle
APT56_RS06715	PWY-5744	glyoxylate assimilation
APT56_RS06715	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS06715	PWY-6679	jadomycin biosynthesis
APT56_RS06715	PWY-6722	candicidin biosynthesis
APT56_RS06715	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT56_RS06755	PWY-2201	folate transformations I
APT56_RS06780	PWY-4381	fatty acid biosynthesis initiation I
APT56_RS06785	PWY-4381	fatty acid biosynthesis initiation I
APT56_RS06785	PWY-6799	fatty acid biosynthesis (plant mitochondria)
APT56_RS06785	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT56_RS06790	PWY-5367	petroselinate biosynthesis
APT56_RS06790	PWY-5515	L-arabinose degradation II
APT56_RS06790	PWY-5525	D-glucuronate degradation I
APT56_RS06790	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT56_RS06790	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT56_RS06790	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT56_RS06790	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT56_RS06790	PWY-6113	superpathway of mycolate biosynthesis
APT56_RS06790	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT56_RS06790	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT56_RS06790	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT56_RS06790	PWY-7663	gondoate biosynthesis (anaerobic)
APT56_RS06790	PWY-7664	oleate biosynthesis IV (anaerobic)
APT56_RS06790	PWYG-321	mycolate biosynthesis
APT56_RS06920	PWY-5642	2,4-dinitrotoluene degradation
APT56_RS06920	PWY-6373	acrylate degradation
APT56_RS06940	PWY-3941	&beta;-alanine biosynthesis II
APT56_RS06940	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS06940	PWY-5747	2-methylcitrate cycle II
APT56_RS06940	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APT56_RS06940	PWY-7118	chitin degradation to ethanol
APT56_RS06955	PWY-6672	<i>cis</i>-genanyl-CoA degradation
APT56_RS06955	PWY-7118	chitin degradation to ethanol
APT56_RS07040	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS07060	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT56_RS07060	PWY-7177	UTP and CTP dephosphorylation II
APT56_RS07060	PWY-7185	UTP and CTP dephosphorylation I
APT56_RS07070	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS07070	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS07070	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS07070	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS07070	PWY-5723	Rubisco shunt
APT56_RS07070	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS07070	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS07070	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS07070	PWY-7003	glycerol degradation to butanol
APT56_RS07070	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS07070	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS07125	PWY-6825	phosphatidylcholine biosynthesis V
APT56_RS07145	PWY-5747	2-methylcitrate cycle II
APT56_RS07150	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS07150	PWY-5392	reductive TCA cycle II
APT56_RS07150	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT56_RS07150	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS07150	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS07150	PWY-6728	methylaspartate cycle
APT56_RS07150	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS07150	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT56_RS07150	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS07170	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS07170	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT56_RS07170	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT56_RS07170	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS07170	PWY-6728	methylaspartate cycle
APT56_RS07170	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS07170	PWY-7254	TCA cycle VII (acetate-producers)
APT56_RS07170	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS07175	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS07175	PWY-4302	aerobic respiration III (alternative oxidase pathway)
APT56_RS07175	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
APT56_RS07175	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS07175	PWY-6728	methylaspartate cycle
APT56_RS07175	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS07175	PWY-7254	TCA cycle VII (acetate-producers)
APT56_RS07175	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS07200	PWY-1281	sulfoacetaldehyde degradation I
APT56_RS07200	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT56_RS07200	PWY-5482	pyruvate fermentation to acetate II
APT56_RS07200	PWY-5485	pyruvate fermentation to acetate IV
APT56_RS07200	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS07200	PWY-6637	sulfolactate degradation II
APT56_RS07200	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS07205	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS07205	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS07205	PWY-7560	methylerythritol phosphate pathway II
APT56_RS07220	PWY-5691	urate degradation to allantoin I
APT56_RS07220	PWY-7394	urate degradation to allantoin II
APT56_RS07240	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT56_RS07245	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT56_RS07250	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT56_RS07250	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT56_RS07335	PWY-5676	acetyl-CoA fermentation to butanoate II
APT56_RS07335	PWY-5741	ethylmalonyl-CoA pathway
APT56_RS07335	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS07400	PWY-7052	cyanophycin metabolism
APT56_RS07405	PWY-7052	cyanophycin metabolism
APT56_RS07500	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
APT56_RS07520	PWY-181	photorespiration
APT56_RS07525	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APT56_RS07525	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APT56_RS07525	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APT56_RS07525	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APT56_RS07525	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
APT56_RS07525	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
APT56_RS07525	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
APT56_RS07525	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APT56_RS07525	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APT56_RS07525	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
APT56_RS07545	PWY-3461	L-tyrosine biosynthesis II
APT56_RS07545	PWY-3462	L-phenylalanine biosynthesis II
APT56_RS07545	PWY-6120	L-tyrosine biosynthesis III
APT56_RS07545	PWY-6627	salinosporamide A biosynthesis
APT56_RS07545	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
APT56_RS07545	PWY-7626	bacilysin biosynthesis
APT56_RS07555	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
APT56_RS07560	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS07565	PWY-7205	CMP phosphorylation
APT56_RS07605	PWY-6936	seleno-amino acid biosynthesis
APT56_RS07620	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS07620	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS07620	PWY-7717	APT56_RS07620
APT56_RS07620	PWY-7733	APT56_RS07620
APT56_RS07620	PWY-7734	APT56_RS07620
APT56_RS07650	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS07650	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APT56_RS07650	PWY-6638	sulfolactate degradation III
APT56_RS07650	PWY-6642	(<i>R</i>)-cysteate degradation
APT56_RS07650	PWY-6643	coenzyme M biosynthesis II
APT56_RS07650	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT56_RS07650	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS07650	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS07695	PWY-5278	sulfite oxidation III
APT56_RS07695	PWY-5340	sulfate activation for sulfonation
APT56_RS07695	PWY-6683	sulfate reduction III (assimilatory)
APT56_RS07695	PWY-6932	selenate reduction
APT56_RS07700	PWY-5278	sulfite oxidation III
APT56_RS07700	PWY-5340	sulfate activation for sulfonation
APT56_RS07700	PWY-6683	sulfate reduction III (assimilatory)
APT56_RS07700	PWY-6932	selenate reduction
APT56_RS07745	PWY-6938	NADH repair
APT56_RS07755	PWY-5176	coumarin biosynthesis (via 2-coumarate)
APT56_RS07795	PWY-1341	phenylacetate degradation II (anaerobic)
APT56_RS07795	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APT56_RS07795	PWY-7716	APT56_RS07795
APT56_RS07820	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS07820	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS07820	PWY-7717	APT56_RS07820
APT56_RS07820	PWY-7733	APT56_RS07820
APT56_RS07820	PWY-7734	APT56_RS07820
APT56_RS07995	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT56_RS08065	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS08065	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS08065	PWY-7560	methylerythritol phosphate pathway II
APT56_RS08070	PWY-5663	tetrahydrobiopterin biosynthesis I
APT56_RS08070	PWY-5664	tetrahydrobiopterin biosynthesis II
APT56_RS08070	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT56_RS08070	PWY-6703	preQ<sub>0</sub> biosynthesis
APT56_RS08070	PWY-6983	tetrahydrobiopterin biosynthesis III
APT56_RS08070	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT56_RS08115	PWY-7294	xylose degradation IV
APT56_RS08115	PWY-7295	L-arabinose degradation IV
APT56_RS08200	PWY-5686	UMP biosynthesis
APT56_RS08250	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT56_RS08250	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT56_RS08250	PWY-6936	seleno-amino acid biosynthesis
APT56_RS08250	PWY-702	L-methionine biosynthesis II
APT56_RS08265	PWY-5392	reductive TCA cycle II
APT56_RS08265	PWY-5537	pyruvate fermentation to acetate V
APT56_RS08265	PWY-5538	pyruvate fermentation to acetate VI
APT56_RS08265	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS08265	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS08265	PWY-6728	methylaspartate cycle
APT56_RS08265	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS08265	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT56_RS08270	PWY-5392	reductive TCA cycle II
APT56_RS08270	PWY-5537	pyruvate fermentation to acetate V
APT56_RS08270	PWY-5538	pyruvate fermentation to acetate VI
APT56_RS08270	PWY-5690	TCA cycle II (plants and fungi)
APT56_RS08270	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS08270	PWY-6728	methylaspartate cycle
APT56_RS08270	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS08270	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
APT56_RS08285	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT56_RS08285	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT56_RS08290	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT56_RS08290	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
APT56_RS08400	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS08425	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT56_RS08425	PWY-6164	3-dehydroquinate biosynthesis I
APT56_RS08425	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT56_RS08495	PWY-6123	inosine-5'-phosphate biosynthesis I
APT56_RS08495	PWY-6124	inosine-5'-phosphate biosynthesis II
APT56_RS08495	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS08495	PWY-7234	inosine-5'-phosphate biosynthesis III
APT56_RS08690	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT56_RS08820	PWY-4983	L-citrulline-nitric oxide cycle
APT56_RS08820	PWY-4984	urea cycle
APT56_RS08820	PWY-5	canavanine biosynthesis
APT56_RS08820	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS08820	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS08880	PWY-4981	L-proline biosynthesis II (from arginine)
APT56_RS08880	PWY-4984	urea cycle
APT56_RS08880	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS08900	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS08900	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS08965	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APT56_RS08965	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
APT56_RS09010	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS09020	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT56_RS09020	PWY-5723	Rubisco shunt
APT56_RS09040	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS09195	PWY-6825	phosphatidylcholine biosynthesis V
APT56_RS09205	PWY-5381	pyridine nucleotide cycling (plants)
APT56_RS09205	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT56_RS09210	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
APT56_RS09210	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
APT56_RS09215	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT56_RS09215	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT56_RS09215	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT56_RS09285	PWY-6967	methylamine degradation I
APT56_RS09300	PWY-6967	methylamine degradation I
APT56_RS09335	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS09390	PWY-6409	pyoverdine I biosynthesis
APT56_RS09390	PWY-6562	norspermidine biosynthesis
APT56_RS09390	PWY-761	rhizobactin 1021 biosynthesis
APT56_RS09395	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS09395	PWY-6416	quinate degradation II
APT56_RS09395	PWY-6707	gallate biosynthesis
APT56_RS09415	PWY-5155	&beta;-alanine biosynthesis III
APT56_RS09465	PWY-6829	tRNA methylation (yeast)
APT56_RS09465	PWY-7285	methylwyosine biosynthesis
APT56_RS09465	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
APT56_RS09500	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT56_RS09500	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
APT56_RS09500	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS09500	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS09500	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT56_RS09500	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT56_RS09500	PWY-7205	CMP phosphorylation
APT56_RS09500	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT56_RS09500	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS09500	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS09500	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS09500	PWY-7224	purine deoxyribonucleosides salvage
APT56_RS09500	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS09500	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT56_RS09505	PWY-2201	folate transformations I
APT56_RS09570	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS09675	PWY-702	L-methionine biosynthesis II
APT56_RS09725	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS09790	PWY-7396	butanol and isobutanol biosynthesis (engineered)
APT56_RS09795	PWY-2941	L-lysine biosynthesis II
APT56_RS09795	PWY-2942	L-lysine biosynthesis III
APT56_RS09795	PWY-5097	L-lysine biosynthesis VI
APT56_RS09795	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS09795	PWY-6559	spermidine biosynthesis II
APT56_RS09795	PWY-6562	norspermidine biosynthesis
APT56_RS09795	PWY-7153	grixazone biosynthesis
APT56_RS09795	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS09865	PWY-5101	L-isoleucine biosynthesis II
APT56_RS09865	PWY-5103	L-isoleucine biosynthesis III
APT56_RS09865	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS09865	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS10565	PWY-5367	petroselinate biosynthesis
APT56_RS10565	PWY-5515	L-arabinose degradation II
APT56_RS10565	PWY-5525	D-glucuronate degradation I
APT56_RS10565	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT56_RS10565	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT56_RS10565	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT56_RS10565	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT56_RS10565	PWY-6113	superpathway of mycolate biosynthesis
APT56_RS10565	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT56_RS10565	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT56_RS10565	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT56_RS10565	PWY-7663	gondoate biosynthesis (anaerobic)
APT56_RS10565	PWY-7664	oleate biosynthesis IV (anaerobic)
APT56_RS10565	PWYG-321	mycolate biosynthesis
APT56_RS10645	PWY-6012	acyl carrier protein metabolism I
APT56_RS10645	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APT56_RS10670	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APT56_RS10670	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT56_RS10715	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT56_RS10715	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT56_RS10765	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS10765	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS10775	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS10775	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS10775	PWY-7560	methylerythritol phosphate pathway II
APT56_RS10785	PWY-4081	glutathione redox reactions I
APT56_RS10855	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS11085	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS11085	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS11085	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS11085	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS11085	PWY-5177	glutaryl-CoA degradation
APT56_RS11085	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS11085	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS11085	PWY-6583	pyruvate fermentation to butanol I
APT56_RS11085	PWY-6863	pyruvate fermentation to hexanol
APT56_RS11085	PWY-6883	pyruvate fermentation to butanol II
APT56_RS11085	PWY-6944	androstenedione degradation
APT56_RS11085	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS11085	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS11085	PWY-7007	methyl ketone biosynthesis
APT56_RS11085	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS11085	PWY-7094	fatty acid salvage
APT56_RS11085	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS11085	PWY-735	jasmonic acid biosynthesis
APT56_RS11085	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS11085	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS11085	PWY-7726	APT56_RS11085
APT56_RS11100	PWY-5101	L-isoleucine biosynthesis II
APT56_RS11100	PWY-5103	L-isoleucine biosynthesis III
APT56_RS11100	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS11100	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS11240	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS11240	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS11240	PWY-7717	APT56_RS11240
APT56_RS11240	PWY-7733	APT56_RS11240
APT56_RS11240	PWY-7734	APT56_RS11240
APT56_RS11410	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS11460	PWY-723	alkylnitronates degradation
APT56_RS11475	PWY-6012	acyl carrier protein metabolism I
APT56_RS11475	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APT56_RS11505	PWY-6167	flavin biosynthesis II (archaea)
APT56_RS11505	PWY-6168	flavin biosynthesis III (fungi)
APT56_RS11505	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS11565	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT56_RS11580	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT56_RS11580	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT56_RS11590	PWY-4983	L-citrulline-nitric oxide cycle
APT56_RS11590	PWY-4984	urea cycle
APT56_RS11590	PWY-5	canavanine biosynthesis
APT56_RS11590	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS11590	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS11600	PWY-5381	pyridine nucleotide cycling (plants)
APT56_RS11600	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
APT56_RS11720	PWY-4041	&gamma;-glutamyl cycle
APT56_RS11720	PWY-5826	hypoglycin biosynthesis
APT56_RS11770	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
APT56_RS11770	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
APT56_RS11770	PWY-6148	tetrahydromethanopterin biosynthesis
APT56_RS11820	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
APT56_RS11820	PWY-2201	folate transformations I
APT56_RS11820	PWY-3841	folate transformations II
APT56_RS11820	PWY-5030	L-histidine degradation III
APT56_RS11820	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS11820	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT56_RS11835	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS11835	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS11835	PWY-7560	methylerythritol phosphate pathway II
APT56_RS11845	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT56_RS11845	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT56_RS12105	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS12190	PWY-2161	folate polyglutamylation
APT56_RS12205	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT56_RS12205	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT56_RS12205	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT56_RS12205	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT56_RS12265	PWY-5667	CDP-diacylglycerol biosynthesis I
APT56_RS12265	PWY-5981	CDP-diacylglycerol biosynthesis III
APT56_RS12270	PWY-7294	xylose degradation IV
APT56_RS12270	PWY-7295	L-arabinose degradation IV
APT56_RS12270	PWY-7560	methylerythritol phosphate pathway II
APT56_RS12295	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT56_RS12295	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT56_RS12295	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT56_RS12295	PWY-5994	palmitate biosynthesis I (animals and fungi)
APT56_RS12295	PWY-6113	superpathway of mycolate biosynthesis
APT56_RS12295	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT56_RS12295	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT56_RS12295	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT56_RS12295	PWY-7663	gondoate biosynthesis (anaerobic)
APT56_RS12295	PWY-7664	oleate biosynthesis IV (anaerobic)
APT56_RS12295	PWYG-321	mycolate biosynthesis
APT56_RS12305	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT56_RS12305	PWY-622	starch biosynthesis
APT56_RS12340	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS12435	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT56_RS12435	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS12435	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS12435	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
APT56_RS12435	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT56_RS12435	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT56_RS12560	PWY-7294	xylose degradation IV
APT56_RS12560	PWY-7295	L-arabinose degradation IV
APT56_RS12610	PWY-1281	sulfoacetaldehyde degradation I
APT56_RS12610	PWY-6637	sulfolactate degradation II
APT56_RS12615	PWY-1281	sulfoacetaldehyde degradation I
APT56_RS12615	PWY-5482	pyruvate fermentation to acetate II
APT56_RS12615	PWY-5485	pyruvate fermentation to acetate IV
APT56_RS12615	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS12615	PWY-6637	sulfolactate degradation II
APT56_RS12700	PWY-5663	tetrahydrobiopterin biosynthesis I
APT56_RS12700	PWY-5664	tetrahydrobiopterin biosynthesis II
APT56_RS12700	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
APT56_RS12700	PWY-6703	preQ<sub>0</sub> biosynthesis
APT56_RS12700	PWY-6983	tetrahydrobiopterin biosynthesis III
APT56_RS12700	PWY-7442	drosopterin and aurodrosopterin biosynthesis
APT56_RS12800	PWY-723	alkylnitronates degradation
APT56_RS12815	PWY-6174	mevalonate pathway II (archaea)
APT56_RS12815	PWY-7391	isoprene biosynthesis II (engineered)
APT56_RS12815	PWY-7524	mevalonate pathway III (archaea)
APT56_RS12815	PWY-922	mevalonate pathway I
APT56_RS12830	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS12830	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS12830	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS12835	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS12835	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS12835	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS12925	PWY-6823	molybdenum cofactor biosynthesis
APT56_RS12930	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT56_RS12930	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS12930	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT56_RS12930	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS12980	PWY-5344	L-homocysteine biosynthesis
APT56_RS12980	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
APT56_RS13035	PWY-5101	L-isoleucine biosynthesis II
APT56_RS13035	PWY-5103	L-isoleucine biosynthesis III
APT56_RS13035	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS13035	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS13185	PWY-6936	seleno-amino acid biosynthesis
APT56_RS13205	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT56_RS13285	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS13285	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS13330	PWY-723	alkylnitronates degradation
APT56_RS13425	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS13425	PWY-6549	L-glutamine biosynthesis III
APT56_RS13425	PWY-6728	methylaspartate cycle
APT56_RS13425	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS13425	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS13425	PWY-7254	TCA cycle VII (acetate-producers)
APT56_RS13425	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
APT56_RS13505	PWY-6486	D-galacturonate degradation II
APT56_RS13505	PWY-6497	D-galactarate degradation II
APT56_RS13505	PWY-6499	D-glucarate degradation II
APT56_RS13505	PWY-6501	D-glucuronate degradation II
APT56_RS13515	PWY-6486	D-galacturonate degradation II
APT56_RS13515	PWY-6497	D-galactarate degradation II
APT56_RS13515	PWY-6499	D-glucarate degradation II
APT56_RS13515	PWY-6501	D-glucuronate degradation II
APT56_RS13520	PWY-6497	D-galactarate degradation II
APT56_RS13655	PWY-2661	trehalose biosynthesis V
APT56_RS13660	PWY-5941	glycogen degradation II (eukaryotic)
APT56_RS13660	PWY-6724	starch degradation II
APT56_RS13660	PWY-6737	starch degradation V
APT56_RS13660	PWY-7238	sucrose biosynthesis II
APT56_RS13665	PWY-2661	trehalose biosynthesis V
APT56_RS13665	PWY-6902	chitin degradation II
APT56_RS13675	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
APT56_RS13675	PWY-622	starch biosynthesis
APT56_RS13680	PWY-2622	trehalose biosynthesis IV
APT56_RS13690	PWY-622	starch biosynthesis
APT56_RS13730	PWY-3801	sucrose degradation II (sucrose synthase)
APT56_RS13730	PWY-5054	sorbitol biosynthesis I
APT56_RS13730	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT56_RS13730	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT56_RS13730	PWY-5659	GDP-mannose biosynthesis
APT56_RS13730	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS13730	PWY-621	sucrose degradation III (sucrose invertase)
APT56_RS13730	PWY-622	starch biosynthesis
APT56_RS13730	PWY-6981	chitin biosynthesis
APT56_RS13730	PWY-6992	1,5-anhydrofructose degradation
APT56_RS13730	PWY-7238	sucrose biosynthesis II
APT56_RS13730	PWY-7347	sucrose biosynthesis III
APT56_RS13730	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT56_RS13760	PWY-3801	sucrose degradation II (sucrose synthase)
APT56_RS13760	PWY-6527	stachyose degradation
APT56_RS13760	PWY-7238	sucrose biosynthesis II
APT56_RS13760	PWY-7343	UDP-glucose biosynthesis
APT56_RS13850	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
APT56_RS13850	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS13850	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT56_RS13850	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT56_RS13850	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS13850	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS13850	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS13850	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
APT56_RS13910	PWY-7254	TCA cycle VII (acetate-producers)
APT56_RS14240	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
APT56_RS14415	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT56_RS14415	PWY-6164	3-dehydroquinate biosynthesis I
APT56_RS14415	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT56_RS14455	PWY-5669	phosphatidylethanolamine biosynthesis I
APT56_RS14510	PWY-31	canavanine degradation
APT56_RS14510	PWY-4984	urea cycle
APT56_RS14510	PWY-6305	putrescine biosynthesis IV
APT56_RS14510	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT56_RS14570	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS14570	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS14610	PWY-3341	L-proline biosynthesis III
APT56_RS14610	PWY-4981	L-proline biosynthesis II (from arginine)
APT56_RS14610	PWY-6344	L-ornithine degradation II (Stickland reaction)
APT56_RS14820	PWY-381	nitrate reduction II (assimilatory)
APT56_RS14820	PWY-5675	nitrate reduction V (assimilatory)
APT56_RS14820	PWY-6549	L-glutamine biosynthesis III
APT56_RS14820	PWY-6963	ammonia assimilation cycle I
APT56_RS14820	PWY-6964	ammonia assimilation cycle II
APT56_RS14830	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
APT56_RS14880	PWY-6617	adenosine nucleotides degradation III
APT56_RS14920	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS14965	PWY-5381	pyridine nucleotide cycling (plants)
APT56_RS15025	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS15060	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT56_RS15060	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT56_RS15060	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT56_RS15060	PWY-6113	superpathway of mycolate biosynthesis
APT56_RS15060	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT56_RS15060	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT56_RS15060	PWY-7663	gondoate biosynthesis (anaerobic)
APT56_RS15060	PWY-7664	oleate biosynthesis IV (anaerobic)
APT56_RS15060	PWYG-321	mycolate biosynthesis
APT56_RS15175	PWY-5381	pyridine nucleotide cycling (plants)
APT56_RS15175	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT56_RS15175	PWY-6596	adenosine nucleotides degradation I
APT56_RS15175	PWY-6606	guanosine nucleotides degradation II
APT56_RS15175	PWY-6607	guanosine nucleotides degradation I
APT56_RS15175	PWY-6608	guanosine nucleotides degradation III
APT56_RS15175	PWY-7185	UTP and CTP dephosphorylation I
APT56_RS15185	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
APT56_RS15185	PWY-5368	dimorphecolate biosynthesis
APT56_RS15185	PWY-5995	linoleate biosynthesis I (plants)
APT56_RS15185	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
APT56_RS15185	PWY-6803	phosphatidylcholine acyl editing
APT56_RS15185	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
APT56_RS15185	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APT56_RS15185	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APT56_RS15185	PWY-7470	phosphatidylcholine biosynthesis VII
APT56_RS15185	PWY-7618	ricinoleate biosynthesis
APT56_RS15450	PWY-4261	glycerol degradation I
APT56_RS15450	PWY-6118	glycerol-3-phosphate shuttle
APT56_RS15450	PWY-6952	glycerophosphodiester degradation
APT56_RS15545	PWY-6703	preQ<sub>0</sub> biosynthesis
APT56_RS15665	PWY-5381	pyridine nucleotide cycling (plants)
APT56_RS15865	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APT56_RS15865	PWY-7494	choline degradation IV
APT56_RS16270	PWY-6854	ethylene biosynthesis III (microbes)
APT56_RS16285	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS16285	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS16285	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS16285	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS16285	PWY-5723	Rubisco shunt
APT56_RS16285	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS16285	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS16285	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS16285	PWY-7003	glycerol degradation to butanol
APT56_RS16285	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS16285	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS16290	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APT56_RS16315	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS16315	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS16315	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS16315	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS16315	PWY-5177	glutaryl-CoA degradation
APT56_RS16315	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS16315	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS16315	PWY-6583	pyruvate fermentation to butanol I
APT56_RS16315	PWY-6863	pyruvate fermentation to hexanol
APT56_RS16315	PWY-6883	pyruvate fermentation to butanol II
APT56_RS16315	PWY-6944	androstenedione degradation
APT56_RS16315	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS16315	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS16315	PWY-7007	methyl ketone biosynthesis
APT56_RS16315	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS16315	PWY-7094	fatty acid salvage
APT56_RS16315	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS16315	PWY-735	jasmonic acid biosynthesis
APT56_RS16315	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS16315	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS16315	PWY-7726	APT56_RS16315
APT56_RS16490	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS16555	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
APT56_RS16715	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS16720	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
APT56_RS16720	PWY-6596	adenosine nucleotides degradation I
APT56_RS16720	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS16795	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS16970	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS16970	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS16970	PWY-7717	APT56_RS16970
APT56_RS16970	PWY-7733	APT56_RS16970
APT56_RS16970	PWY-7734	APT56_RS16970
APT56_RS16990	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
APT56_RS17285	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT56_RS17285	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
APT56_RS17285	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
APT56_RS17335	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APT56_RS17335	PWY-7494	choline degradation IV
APT56_RS17490	PWY-6897	thiamin salvage II
APT56_RS17490	PWY-7356	thiamin salvage IV (yeast)
APT56_RS17490	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
APT56_RS17600	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS17690	PWY-6823	molybdenum cofactor biosynthesis
APT56_RS17690	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS17690	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS17690	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
APT56_RS17710	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS17710	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
APT56_RS17710	PWY-6638	sulfolactate degradation III
APT56_RS17710	PWY-6642	(<i>R</i>)-cysteate degradation
APT56_RS17710	PWY-6643	coenzyme M biosynthesis II
APT56_RS17710	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT56_RS17710	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS17710	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS17790	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS17835	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT56_RS17835	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT56_RS17865	PWY-4261	glycerol degradation I
APT56_RS17865	PWY-6118	glycerol-3-phosphate shuttle
APT56_RS17865	PWY-6952	glycerophosphodiester degradation
APT56_RS17870	PWY-4261	glycerol degradation I
APT56_RS17955	PWY-3461	L-tyrosine biosynthesis II
APT56_RS17955	PWY-3462	L-phenylalanine biosynthesis II
APT56_RS17955	PWY-6120	L-tyrosine biosynthesis III
APT56_RS17955	PWY-6627	salinosporamide A biosynthesis
APT56_RS17955	PWY-7626	bacilysin biosynthesis
APT56_RS17975	PWY-6825	phosphatidylcholine biosynthesis V
APT56_RS17980	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
APT56_RS17980	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
APT56_RS17985	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
APT56_RS17985	PWY-6167	flavin biosynthesis II (archaea)
APT56_RS17985	PWY-6168	flavin biosynthesis III (fungi)
APT56_RS18165	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
APT56_RS18165	PWY-6853	ethylene biosynthesis II (microbes)
APT56_RS18165	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT56_RS18215	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS18215	PWY-2361	3-oxoadipate degradation
APT56_RS18215	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APT56_RS18230	PWY-6854	ethylene biosynthesis III (microbes)
APT56_RS18270	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT56_RS18275	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
APT56_RS18305	PWY-2941	L-lysine biosynthesis II
APT56_RS18305	PWY-2942	L-lysine biosynthesis III
APT56_RS18305	PWY-5097	L-lysine biosynthesis VI
APT56_RS18410	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS18600	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT56_RS18635	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS18635	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS18635	PWY-7717	APT56_RS18635
APT56_RS18635	PWY-7733	APT56_RS18635
APT56_RS18635	PWY-7734	APT56_RS18635
APT56_RS18770	PWY-6610	adenine and adenosine salvage IV
APT56_RS19050	PWY-6012	acyl carrier protein metabolism I
APT56_RS19050	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APT56_RS19105	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS19105	PWY-6416	quinate degradation II
APT56_RS19105	PWY-6707	gallate biosynthesis
APT56_RS19110	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT56_RS19110	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT56_RS19210	PWY-5692	allantoin degradation to glyoxylate II
APT56_RS19210	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
APT56_RS19275	PWY-6654	phosphopantothenate biosynthesis III
APT56_RS19285	PWY-5350	thiosulfate disproportionation III (rhodanese)
APT56_RS19350	PWY-5532	adenosine nucleotides degradation IV
APT56_RS19350	PWY-5723	Rubisco shunt
APT56_RS19600	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS19600	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS19600	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS19600	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS19600	PWY-5723	Rubisco shunt
APT56_RS19600	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS19600	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS19600	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS19600	PWY-7003	glycerol degradation to butanol
APT56_RS19600	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS19600	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS19605	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
APT56_RS19605	PWY-7494	choline degradation IV
APT56_RS19610	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS19620	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS19620	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS19620	PWY-7560	methylerythritol phosphate pathway II
APT56_RS19640	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS19640	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS19640	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS19640	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS19640	PWY-5177	glutaryl-CoA degradation
APT56_RS19640	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS19640	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS19640	PWY-6583	pyruvate fermentation to butanol I
APT56_RS19640	PWY-6863	pyruvate fermentation to hexanol
APT56_RS19640	PWY-6883	pyruvate fermentation to butanol II
APT56_RS19640	PWY-6944	androstenedione degradation
APT56_RS19640	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS19640	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS19640	PWY-7007	methyl ketone biosynthesis
APT56_RS19640	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS19640	PWY-7094	fatty acid salvage
APT56_RS19640	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS19640	PWY-735	jasmonic acid biosynthesis
APT56_RS19640	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS19640	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS19640	PWY-7726	APT56_RS19640
APT56_RS19895	PWY-3821	galactose degradation III
APT56_RS19895	PWY-6317	galactose degradation I (Leloir pathway)
APT56_RS19895	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT56_RS19895	PWY-6527	stachyose degradation
APT56_RS19895	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT56_RS19895	PWY-7344	UDP-D-galactose biosynthesis
APT56_RS19900	PWY-3801	sucrose degradation II (sucrose synthase)
APT56_RS19900	PWY-5054	sorbitol biosynthesis I
APT56_RS19900	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT56_RS19900	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT56_RS19900	PWY-5659	GDP-mannose biosynthesis
APT56_RS19900	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS19900	PWY-621	sucrose degradation III (sucrose invertase)
APT56_RS19900	PWY-622	starch biosynthesis
APT56_RS19900	PWY-6981	chitin biosynthesis
APT56_RS19900	PWY-6992	1,5-anhydrofructose degradation
APT56_RS19900	PWY-7238	sucrose biosynthesis II
APT56_RS19900	PWY-7347	sucrose biosynthesis III
APT56_RS19900	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT56_RS19905	PWY-6749	CMP-legionaminate biosynthesis I
APT56_RS19920	PWY-6655	xanthan biosynthesis
APT56_RS19920	PWY-6658	acetan biosynthesis
APT56_RS19930	PWY-5659	GDP-mannose biosynthesis
APT56_RS19930	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
APT56_RS19940	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
APT56_RS19940	PWY-5739	GDP-D-perosamine biosynthesis
APT56_RS19940	PWY-5740	GDP-L-colitose biosynthesis
APT56_RS19940	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
APT56_RS19940	PWY-7573	GDP-mycosamine biosynthesis
APT56_RS19945	PWY-5481	pyruvate fermentation to lactate
APT56_RS19945	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
APT56_RS19945	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS20015	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS20015	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS20015	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS20015	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS20015	PWY-5177	glutaryl-CoA degradation
APT56_RS20015	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS20015	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS20015	PWY-6583	pyruvate fermentation to butanol I
APT56_RS20015	PWY-6863	pyruvate fermentation to hexanol
APT56_RS20015	PWY-6883	pyruvate fermentation to butanol II
APT56_RS20015	PWY-6944	androstenedione degradation
APT56_RS20015	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS20015	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS20015	PWY-7007	methyl ketone biosynthesis
APT56_RS20015	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS20015	PWY-7094	fatty acid salvage
APT56_RS20015	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS20015	PWY-735	jasmonic acid biosynthesis
APT56_RS20015	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS20015	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS20015	PWY-7726	APT56_RS20015
APT56_RS20025	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS20025	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS20025	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS20025	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS20025	PWY-5177	glutaryl-CoA degradation
APT56_RS20025	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS20025	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS20025	PWY-6583	pyruvate fermentation to butanol I
APT56_RS20025	PWY-6863	pyruvate fermentation to hexanol
APT56_RS20025	PWY-6883	pyruvate fermentation to butanol II
APT56_RS20025	PWY-6944	androstenedione degradation
APT56_RS20025	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS20025	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS20025	PWY-7007	methyl ketone biosynthesis
APT56_RS20025	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS20025	PWY-7094	fatty acid salvage
APT56_RS20025	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS20025	PWY-735	jasmonic acid biosynthesis
APT56_RS20025	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS20025	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS20025	PWY-7726	APT56_RS20025
APT56_RS20080	PWY-7294	xylose degradation IV
APT56_RS20080	PWY-7295	L-arabinose degradation IV
APT56_RS20115	PWY-5331	taurine biosynthesis
APT56_RS20235	PWY-2941	L-lysine biosynthesis II
APT56_RS20235	PWY-2942	L-lysine biosynthesis III
APT56_RS20235	PWY-5097	L-lysine biosynthesis VI
APT56_RS20235	PWY-6559	spermidine biosynthesis II
APT56_RS20235	PWY-6562	norspermidine biosynthesis
APT56_RS20235	PWY-7153	grixazone biosynthesis
APT56_RS20245	PWY-4381	fatty acid biosynthesis initiation I
APT56_RS20245	PWY-5743	3-hydroxypropanoate cycle
APT56_RS20245	PWY-5744	glyoxylate assimilation
APT56_RS20245	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS20245	PWY-6679	jadomycin biosynthesis
APT56_RS20245	PWY-6722	candicidin biosynthesis
APT56_RS20245	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
APT56_RS20275	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
APT56_RS20285	PWY-2301	<i>myo</i>-inositol biosynthesis
APT56_RS20285	PWY-4702	phytate degradation I
APT56_RS20285	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
APT56_RS20290	PWY-6004	glycine betaine biosynthesis V (from glycine)
APT56_RS20365	PWY-5169	cyanurate degradation
APT56_RS20365	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS20455	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
APT56_RS20455	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
APT56_RS20480	PWY-2941	L-lysine biosynthesis II
APT56_RS20480	PWY-2942	L-lysine biosynthesis III
APT56_RS20480	PWY-5097	L-lysine biosynthesis VI
APT56_RS20820	PWY-4041	&gamma;-glutamyl cycle
APT56_RS20820	PWY-5826	hypoglycin biosynthesis
APT56_RS21010	PWY-6803	phosphatidylcholine acyl editing
APT56_RS21010	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
APT56_RS21010	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
APT56_RS21010	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
APT56_RS21020	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS21020	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS21020	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS21020	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS21020	PWY-5723	Rubisco shunt
APT56_RS21020	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS21020	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS21020	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS21020	PWY-7003	glycerol degradation to butanol
APT56_RS21020	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS21020	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS21025	PWY-7294	xylose degradation IV
APT56_RS21025	PWY-7295	L-arabinose degradation IV
APT56_RS21065	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS21065	PWY-4521	arsenite oxidation I (respiratory)
APT56_RS21065	PWY-6692	Fe(II) oxidation
APT56_RS21065	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS21070	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS21070	PWY-4521	arsenite oxidation I (respiratory)
APT56_RS21070	PWY-6692	Fe(II) oxidation
APT56_RS21070	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS21090	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT56_RS21090	PWY-6578	8-amino-7-oxononanoate biosynthesis III
APT56_RS21090	PWY-7147	8-amino-7-oxononanoate biosynthesis II
APT56_RS21105	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APT56_RS21140	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS21145	PWY-6700	queuosine biosynthesis
APT56_RS21170	PWY-5269	cardiolipin biosynthesis II
APT56_RS21170	PWY-5668	cardiolipin biosynthesis I
APT56_RS21180	PWY-6902	chitin degradation II
APT56_RS21185	PWY-6012	acyl carrier protein metabolism I
APT56_RS21185	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
APT56_RS21245	PWY-6834	spermidine biosynthesis III
APT56_RS21475	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT56_RS21475	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT56_RS21510	PWY-3341	L-proline biosynthesis III
APT56_RS21510	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT56_RS21530	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS21550	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS21550	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS21550	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS21550	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS21550	PWY-5177	glutaryl-CoA degradation
APT56_RS21550	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS21550	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS21550	PWY-6583	pyruvate fermentation to butanol I
APT56_RS21550	PWY-6863	pyruvate fermentation to hexanol
APT56_RS21550	PWY-6883	pyruvate fermentation to butanol II
APT56_RS21550	PWY-6944	androstenedione degradation
APT56_RS21550	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS21550	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS21550	PWY-7007	methyl ketone biosynthesis
APT56_RS21550	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS21550	PWY-7094	fatty acid salvage
APT56_RS21550	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS21550	PWY-735	jasmonic acid biosynthesis
APT56_RS21550	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS21550	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS21550	PWY-7726	APT56_RS21550
APT56_RS21570	PWY-7425	2-chloroacrylate degradation I
APT56_RS21740	PWY-5747	2-methylcitrate cycle II
APT56_RS21875	PWY-6749	CMP-legionaminate biosynthesis I
APT56_RS21880	PWY-6614	tetrahydrofolate biosynthesis
APT56_RS21955	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS21955	PWY-5686	UMP biosynthesis
APT56_RS21955	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS21960	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS21960	PWY-5686	UMP biosynthesis
APT56_RS21960	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS21965	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT56_RS21965	PWY-5723	Rubisco shunt
APT56_RS22050	PWY-723	alkylnitronates degradation
APT56_RS22175	PWY-101	photosynthesis light reactions
APT56_RS22175	PWY-6085	2,4-dichlorophenoxyacetate  degradation
APT56_RS22175	PWY-6086	4-chloro-2-methylphenoxyacetate degradation
APT56_RS22175	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
APT56_RS22180	PWY-6085	2,4-dichlorophenoxyacetate  degradation
APT56_RS22180	PWY-6086	4-chloro-2-methylphenoxyacetate degradation
APT56_RS22185	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS22190	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS22300	PWY-6123	inosine-5'-phosphate biosynthesis I
APT56_RS22300	PWY-7234	inosine-5'-phosphate biosynthesis III
APT56_RS22310	PWY-6123	inosine-5'-phosphate biosynthesis I
APT56_RS22310	PWY-6124	inosine-5'-phosphate biosynthesis II
APT56_RS22310	PWY-7234	inosine-5'-phosphate biosynthesis III
APT56_RS22315	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT56_RS22320	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS22320	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT56_RS22320	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS22320	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS22320	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT56_RS22325	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS22385	PWY-7399	methylphosphonate degradation II
APT56_RS22390	PWY-7399	methylphosphonate degradation II
APT56_RS22400	PWY-7399	methylphosphonate degradation II
APT56_RS22415	PWY-7399	methylphosphonate degradation II
APT56_RS22425	PWY-7399	methylphosphonate degradation II
APT56_RS22430	PWY-5532	adenosine nucleotides degradation IV
APT56_RS22435	PWY-5532	adenosine nucleotides degradation IV
APT56_RS22445	PWY-4041	&gamma;-glutamyl cycle
APT56_RS22445	PWY-5826	hypoglycin biosynthesis
APT56_RS22475	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
APT56_RS22570	PWY-1281	sulfoacetaldehyde degradation I
APT56_RS22570	PWY-5482	pyruvate fermentation to acetate II
APT56_RS22570	PWY-5485	pyruvate fermentation to acetate IV
APT56_RS22570	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS22570	PWY-6637	sulfolactate degradation II
APT56_RS22575	PWY-5482	pyruvate fermentation to acetate II
APT56_RS22575	PWY-5485	pyruvate fermentation to acetate IV
APT56_RS22575	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS22580	PWY-5971	palmitate biosynthesis II (bacteria and plants)
APT56_RS22580	PWY-5973	<i>cis</i>-vaccenate biosynthesis
APT56_RS22580	PWY-5989	stearate biosynthesis II (bacteria and plants)
APT56_RS22580	PWY-6113	superpathway of mycolate biosynthesis
APT56_RS22580	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
APT56_RS22580	PWY-6519	8-amino-7-oxononanoate biosynthesis I
APT56_RS22580	PWY-7663	gondoate biosynthesis (anaerobic)
APT56_RS22580	PWY-7664	oleate biosynthesis IV (anaerobic)
APT56_RS22580	PWYG-321	mycolate biosynthesis
APT56_RS22595	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS22595	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS22595	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS22595	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS22595	PWY-7003	glycerol degradation to butanol
APT56_RS22600	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS22600	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS22600	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS22600	PWY-7003	glycerol degradation to butanol
APT56_RS22605	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
APT56_RS22605	PWY-5723	Rubisco shunt
APT56_RS22605	PWY-6891	thiazole biosynthesis II (Bacillus)
APT56_RS22605	PWY-6892	thiazole biosynthesis I (E. coli)
APT56_RS22605	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS22605	PWY-7560	methylerythritol phosphate pathway II
APT56_RS22615	PWY-2201	folate transformations I
APT56_RS22630	PWY-1281	sulfoacetaldehyde degradation I
APT56_RS22630	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT56_RS22630	PWY-5482	pyruvate fermentation to acetate II
APT56_RS22630	PWY-5485	pyruvate fermentation to acetate IV
APT56_RS22630	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS22630	PWY-6637	sulfolactate degradation II
APT56_RS22630	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS22650	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
APT56_RS22650	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
APT56_RS22650	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
APT56_RS22650	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
APT56_RS22650	PWY-6978	plastoquinol-9 biosynthesis II
APT56_RS22690	PWY-5194	siroheme biosynthesis
APT56_RS22690	PWY-5441	S-methyl-L-methionine cycle
APT56_RS22690	PWY-702	L-methionine biosynthesis II
APT56_RS22690	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
APT56_RS22695	PWY-7183	pyrimidine nucleobases salvage I
APT56_RS22700	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT56_RS22700	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT56_RS22725	PWY-6700	queuosine biosynthesis
APT56_RS22730	PWY-6700	queuosine biosynthesis
APT56_RS22830	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
APT56_RS22875	PWY-6823	molybdenum cofactor biosynthesis
APT56_RS22890	PWY-5964	guanylyl molybdenum cofactor biosynthesis
APT56_RS22890	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
APT56_RS22895	PWY-6823	molybdenum cofactor biosynthesis
APT56_RS22915	PWY-1881	formate oxidation to CO<sub>2</sub>
APT56_RS22915	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS22915	PWY-6696	oxalate degradation III
APT56_RS22960	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
APT56_RS22960	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
APT56_RS23070	PWY-5169	cyanurate degradation
APT56_RS23070	PWY-5703	urea degradation I
APT56_RS23075	PWY-5169	cyanurate degradation
APT56_RS23075	PWY-5703	urea degradation I
APT56_RS23075	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS23120	PWY-4202	arsenate detoxification I (glutaredoxin)
APT56_RS23120	PWY-4621	arsenate detoxification II (glutaredoxin)
APT56_RS23240	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS23240	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS23255	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS23325	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS23325	PWY-4521	arsenite oxidation I (respiratory)
APT56_RS23325	PWY-6692	Fe(II) oxidation
APT56_RS23325	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS23325	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
APT56_RS23375	PWY-1281	sulfoacetaldehyde degradation I
APT56_RS23375	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT56_RS23375	PWY-5482	pyruvate fermentation to acetate II
APT56_RS23375	PWY-5485	pyruvate fermentation to acetate IV
APT56_RS23375	PWY-5497	purine nucleobases degradation II (anaerobic)
APT56_RS23375	PWY-6637	sulfolactate degradation II
APT56_RS23375	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS23590	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT56_RS23590	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
APT56_RS23590	PWY-6936	seleno-amino acid biosynthesis
APT56_RS23590	PWY-702	L-methionine biosynthesis II
APT56_RS23655	PWY-3781	aerobic respiration I (cytochrome c)
APT56_RS23655	PWY-4521	arsenite oxidation I (respiratory)
APT56_RS23655	PWY-6692	Fe(II) oxidation
APT56_RS23655	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
APT56_RS23655	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
APT56_RS23760	PWY-6683	sulfate reduction III (assimilatory)
APT56_RS23990	PWY-4202	arsenate detoxification I (glutaredoxin)
APT56_RS23990	PWY-4621	arsenate detoxification II (glutaredoxin)
APT56_RS24295	PWY-5647	2-nitrobenzoate degradation I
APT56_RS24295	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS24295	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS24295	PWY-6505	L-tryptophan degradation XII (Geobacillus)
APT56_RS24300	PWY-5647	2-nitrobenzoate degradation I
APT56_RS24300	PWY-5652	2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA
APT56_RS24300	PWY-5654	2-amino-3-carboxymuconate semialdehyde degradation to 2-oxopentenoate
APT56_RS24330	PWY-6531	mannitol cycle
APT56_RS24335	PWY-7039	phosphatidate metabolism, as a signaling molecule
APT56_RS24345	PWY-5686	UMP biosynthesis
APT56_RS24355	PWY-5269	cardiolipin biosynthesis II
APT56_RS24355	PWY-5668	cardiolipin biosynthesis I
APT56_RS24360	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
APT56_RS24360	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
APT56_RS24360	PWY-6896	thiamin salvage I
APT56_RS24360	PWY-6897	thiamin salvage II
APT56_RS24370	PWY-6167	flavin biosynthesis II (archaea)
APT56_RS24370	PWY-6168	flavin biosynthesis III (fungi)
APT56_RS24375	PWY-6167	flavin biosynthesis II (archaea)
APT56_RS24375	PWY-6168	flavin biosynthesis III (fungi)
APT56_RS24375	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
APT56_RS24420	PWY-6825	phosphatidylcholine biosynthesis V
APT56_RS24485	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
APT56_RS24505	PWY-7560	methylerythritol phosphate pathway II
APT56_RS24625	PWY-6749	CMP-legionaminate biosynthesis I
APT56_RS24630	PWY-3801	sucrose degradation II (sucrose synthase)
APT56_RS24630	PWY-5054	sorbitol biosynthesis I
APT56_RS24630	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
APT56_RS24630	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
APT56_RS24630	PWY-5659	GDP-mannose biosynthesis
APT56_RS24630	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS24630	PWY-621	sucrose degradation III (sucrose invertase)
APT56_RS24630	PWY-622	starch biosynthesis
APT56_RS24630	PWY-6981	chitin biosynthesis
APT56_RS24630	PWY-6992	1,5-anhydrofructose degradation
APT56_RS24630	PWY-7238	sucrose biosynthesis II
APT56_RS24630	PWY-7347	sucrose biosynthesis III
APT56_RS24630	PWY-7385	1,3-propanediol biosynthesis (engineered)
APT56_RS24635	PWY-4041	&gamma;-glutamyl cycle
APT56_RS24635	PWY-5826	hypoglycin biosynthesis
APT56_RS24680	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT56_RS24680	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
APT56_RS24680	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT56_RS24695	PWY-3841	folate transformations II
APT56_RS24695	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
APT56_RS24695	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS24695	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
APT56_RS24695	PWY-7199	pyrimidine deoxyribonucleosides salvage
APT56_RS24695	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
APT56_RS24705	PWY-3841	folate transformations II
APT56_RS24705	PWY-6614	tetrahydrofolate biosynthesis
APT56_RS24720	PWY-5642	2,4-dinitrotoluene degradation
APT56_RS24720	PWY-6373	acrylate degradation
APT56_RS24750	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS24785	PWY-6854	ethylene biosynthesis III (microbes)
APT56_RS24820	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
APT56_RS24945	PWY-5676	acetyl-CoA fermentation to butanoate II
APT56_RS24945	PWY-5741	ethylmalonyl-CoA pathway
APT56_RS24945	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS25095	PWY-6986	alginate degradation
APT56_RS25135	PWY-4983	L-citrulline-nitric oxide cycle
APT56_RS25135	PWY-4984	urea cycle
APT56_RS25135	PWY-5	canavanine biosynthesis
APT56_RS25135	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS25135	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS25170	PWY-2201	folate transformations I
APT56_RS25340	PWY-7130	L-glucose degradation
APT56_RS25345	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS25345	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
APT56_RS25345	PWY-7242	D-fructuronate degradation
APT56_RS25345	PWY-7310	D-glucosaminate degradation
APT56_RS25345	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
APT56_RS25350	PWY-1042	glycolysis IV (plant cytosol)
APT56_RS25350	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS25350	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
APT56_RS25350	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS25350	PWY-5723	Rubisco shunt
APT56_RS25350	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS25350	PWY-6886	1-butanol autotrophic biosynthesis
APT56_RS25350	PWY-6901	superpathway of glucose and xylose degradation
APT56_RS25350	PWY-7003	glycerol degradation to butanol
APT56_RS25350	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS25350	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
APT56_RS25520	PWY-4261	glycerol degradation I
APT56_RS25620	PWY-5694	allantoin degradation to glyoxylate I
APT56_RS25620	PWY-5705	allantoin degradation to glyoxylate III
APT56_RS25705	PWY-3341	L-proline biosynthesis III
APT56_RS25705	PWY-4981	L-proline biosynthesis II (from arginine)
APT56_RS25705	PWY-6344	L-ornithine degradation II (Stickland reaction)
APT56_RS25735	PWY-2941	L-lysine biosynthesis II
APT56_RS25735	PWY-2942	L-lysine biosynthesis III
APT56_RS25735	PWY-5097	L-lysine biosynthesis VI
APT56_RS25830	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS25880	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
APT56_RS25880	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
APT56_RS25890	PWY-5101	L-isoleucine biosynthesis II
APT56_RS25890	PWY-5103	L-isoleucine biosynthesis III
APT56_RS25890	PWY-5104	L-isoleucine biosynthesis IV
APT56_RS25890	PWY-7111	pyruvate fermentation to isobutanol (engineered)
APT56_RS25900	PWY-6871	3-methylbutanol biosynthesis
APT56_RS25925	PWY-6703	preQ<sub>0</sub> biosynthesis
APT56_RS25930	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS25930	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT56_RS25930	PWY-5913	TCA cycle VI (obligate autotrophs)
APT56_RS25930	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS25930	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
APT56_RS25930	PWY-6549	L-glutamine biosynthesis III
APT56_RS25930	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT56_RS25930	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS25930	PWY-7124	ethylene biosynthesis V (engineered)
APT56_RS25935	PWY-1361	benzoyl-CoA degradation I (aerobic)
APT56_RS25935	PWY-5109	2-methylbutanoate biosynthesis
APT56_RS25935	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
APT56_RS25935	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
APT56_RS25935	PWY-5177	glutaryl-CoA degradation
APT56_RS25935	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
APT56_RS25935	PWY-6435	4-hydroxybenzoate biosynthesis V
APT56_RS25935	PWY-6583	pyruvate fermentation to butanol I
APT56_RS25935	PWY-6863	pyruvate fermentation to hexanol
APT56_RS25935	PWY-6883	pyruvate fermentation to butanol II
APT56_RS25935	PWY-6944	androstenedione degradation
APT56_RS25935	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
APT56_RS25935	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
APT56_RS25935	PWY-7007	methyl ketone biosynthesis
APT56_RS25935	PWY-7046	4-coumarate degradation (anaerobic)
APT56_RS25935	PWY-7094	fatty acid salvage
APT56_RS25935	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
APT56_RS25935	PWY-735	jasmonic acid biosynthesis
APT56_RS25935	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
APT56_RS25935	PWY-7606	docosahexaenoate biosynthesis III (mammals)
APT56_RS25935	PWY-7726	APT56_RS25935
APT56_RS25965	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APT56_RS25975	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
APT56_RS25980	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
APT56_RS25980	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
APT56_RS25980	PWY-7717	APT56_RS25980
APT56_RS25980	PWY-7733	APT56_RS25980
APT56_RS25980	PWY-7734	APT56_RS25980
APT56_RS25995	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
APT56_RS25995	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
APT56_RS25995	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
APT56_RS25995	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
APT56_RS26085	PWY-6683	sulfate reduction III (assimilatory)
APT56_RS26120	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
APT56_RS26120	PWY-5389	3-methylthiopropanoate biosynthesis
APT56_RS26155	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT56_RS26335	PWY-3341	L-proline biosynthesis III
APT56_RS26335	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
APT56_RS26355	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
APT56_RS26390	PWY-1622	formaldehyde assimilation I (serine pathway)
APT56_RS26390	PWY-5484	glycolysis II (from fructose 6-phosphate)
APT56_RS26410	PWY-5667	CDP-diacylglycerol biosynthesis I
APT56_RS26410	PWY-5981	CDP-diacylglycerol biosynthesis III
APT56_RS26420	PWY-6004	glycine betaine biosynthesis V (from glycine)
APT56_RS26435	PWY-6840	homoglutathione biosynthesis
APT56_RS26435	PWY-7255	ergothioneine biosynthesis I (bacteria)
APT56_RS26465	PWY-6825	phosphatidylcholine biosynthesis V
APT56_RS26530	PWY-5074	mevalonate degradation
APT56_RS26550	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
APT56_RS26595	PWY-6605	adenine and adenosine salvage II
APT56_RS26595	PWY-6610	adenine and adenosine salvage IV
APT56_RS26610	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
APT56_RS26640	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
APT56_RS26640	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
APT56_RS26705	PWY-2201	folate transformations I
APT56_RS26715	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
APT56_RS26735	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
APT56_RS26735	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
APT56_RS26790	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS26805	PWY-5686	UMP biosynthesis
APT56_RS26990	PWY-6899	base-degraded thiamin salvage
APT56_RS26990	PWY-7356	thiamin salvage IV (yeast)
APT56_RS27070	PWY-2201	folate transformations I
APT56_RS27070	PWY-3841	folate transformations II
APT56_RS27080	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT56_RS27160	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
APT56_RS27165	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
APT56_RS27165	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
APT56_RS27180	PWY-2941	L-lysine biosynthesis II
APT56_RS27180	PWY-5097	L-lysine biosynthesis VI
APT56_RS27250	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
APT56_RS27250	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
APT56_RS27250	PWY-6268	adenosylcobalamin salvage from cobalamin
APT56_RS27250	PWY-6269	adenosylcobalamin salvage from cobinamide II
APT56_RS27255	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT56_RS27255	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT56_RS27270	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
APT56_RS27270	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
APT56_RS27285	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
APT56_RS27285	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
APT56_RS27320	PWY-3961	phosphopantothenate biosynthesis II
APT56_RS27325	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
APT56_RS27340	PWY-3821	galactose degradation III
APT56_RS27340	PWY-6317	galactose degradation I (Leloir pathway)
APT56_RS27340	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
APT56_RS27340	PWY-6527	stachyose degradation
APT56_RS27340	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
APT56_RS27340	PWY-7344	UDP-D-galactose biosynthesis
APT56_RS27415	PWY-3221	dTDP-L-rhamnose biosynthesis II
APT56_RS27415	PWY-6808	dTDP-D-forosamine biosynthesis
APT56_RS27415	PWY-6942	dTDP-D-desosamine biosynthesis
APT56_RS27415	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APT56_RS27415	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APT56_RS27415	PWY-6974	dTDP-L-olivose biosynthesis
APT56_RS27415	PWY-6976	dTDP-L-mycarose biosynthesis
APT56_RS27415	PWY-7104	dTDP-L-megosamine biosynthesis
APT56_RS27415	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APT56_RS27415	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APT56_RS27415	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APT56_RS27415	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APT56_RS27415	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APT56_RS27415	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APT56_RS27415	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APT56_RS27415	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APT56_RS27415	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APT56_RS27415	PWY-7688	APT56_RS27415
APT56_RS27420	PWY-3221	dTDP-L-rhamnose biosynthesis II
APT56_RS27420	PWY-6808	dTDP-D-forosamine biosynthesis
APT56_RS27420	PWY-6942	dTDP-D-desosamine biosynthesis
APT56_RS27420	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
APT56_RS27420	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
APT56_RS27420	PWY-6974	dTDP-L-olivose biosynthesis
APT56_RS27420	PWY-6976	dTDP-L-mycarose biosynthesis
APT56_RS27420	PWY-7104	dTDP-L-megosamine biosynthesis
APT56_RS27420	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
APT56_RS27420	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
APT56_RS27420	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
APT56_RS27420	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
APT56_RS27420	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
APT56_RS27420	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
APT56_RS27420	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
APT56_RS27420	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
APT56_RS27420	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
APT56_RS27420	PWY-7688	APT56_RS27420
APT56_RS27460	PWY-4381	fatty acid biosynthesis initiation I
APT56_RS27475	PWY-2941	L-lysine biosynthesis II
APT56_RS27475	PWY-2942	L-lysine biosynthesis III
APT56_RS27475	PWY-5097	L-lysine biosynthesis VI
APT56_RS27515	PWY-6728	methylaspartate cycle
APT56_RS27515	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
APT56_RS27515	PWY-7118	chitin degradation to ethanol
APT56_RS27515	PWY-7294	xylose degradation IV
APT56_RS27515	PWY-7295	L-arabinose degradation IV
APT56_RS27575	PWY-6164	3-dehydroquinate biosynthesis I
APT56_RS27580	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
APT56_RS27610	PWY-2941	L-lysine biosynthesis II
APT56_RS27610	PWY-2942	L-lysine biosynthesis III
APT56_RS27610	PWY-5097	L-lysine biosynthesis VI
APT56_RS27635	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
APT56_RS27635	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
