locus-tag class description AFER_RS00005 PF11638 DnaA N-terminal domain AFER_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AFER_RS00005 PF00308 Bacterial dnaA protein AFER_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFER_RS00010 PF02767 DNA polymerase III beta subunit, central domain AFER_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFER_RS00015 PF02463 RecF/RecN/SMC N terminal domain AFER_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus AFER_RS00020 PF00204 DNA gyrase B AFER_RS00020 PF01751 Toprim domain AFER_RS00025 PF03989 DNA gyrase C-terminal domain, beta-propeller AFER_RS00025 PF00521 DNA gyrase/topoisomerase IV, subunit A AFER_RS00035 PF00437 Type II/IV secretion system protein AFER_RS00110 PF01743 Poly A polymerase head domain AFER_RS00110 PF13735 tRNA nucleotidyltransferase domain 2 putative AFER_RS00110 PF12627 Probable RNA and SrmB- binding site of polymerase A AFER_RS00115 PF00850 Histone deacetylase domain AFER_RS00130 PF03023 Lipid II flippase MurJ AFER_RS00135 PF02645 Uncharacterised protein, DegV family COG1307 AFER_RS00145 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS00150 PF00085 Thioredoxin AFER_RS00175 PF00561 alpha/beta hydrolase fold AFER_RS00185 PF01658 Myo-inositol-1-phosphate synthase AFER_RS00205 PF02548 Ketopantoate hydroxymethyltransferase AFER_RS00210 PF03796 DnaB-like helicase C terminal domain AFER_RS00210 PF14528 LAGLIDADG-like domain AFER_RS00210 PF00772 DnaB-like helicase N terminal domain AFER_RS00210 PF00772 DnaB-like helicase N terminal domain AFER_RS00210 PF03796 DnaB-like helicase C terminal domain AFER_RS00210 PF14528 LAGLIDADG-like domain AFER_RS00215 PF01281 Ribosomal protein L9, N-terminal domain AFER_RS00215 PF03948 Ribosomal protein L9, C-terminal domain AFER_RS00220 PF01084 Ribosomal protein S18 AFER_RS00225 PF00436 Single-strand binding protein family AFER_RS00230 PF01250 Ribosomal protein S6 AFER_RS00260 PF02754 Cysteine-rich domain AFER_RS00260 PF13183 4Fe-4S dicluster domain AFER_RS00260 PF02665 Nitrate reductase gamma subunit AFER_RS00265 PF00692 dUTPase AFER_RS00275 PF14659 Phage integrase, N-terminal SAM-like domain AFER_RS00275 PF00589 Phage integrase family AFER_RS00320 PF00150 Cellulase (glycosyl hydrolase family 5) AFER_RS00320 PF14600 Cellulose-binding domain AFER_RS00325 PF01527 Transposase AFER_RS00330 PF13276 HTH-like domain AFER_RS00330 PF00665 Integrase core domain AFER_RS00375 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFER_RS00380 PF01230 HIT domain AFER_RS00385 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS00385 PF14759 Reductase C-terminal AFER_RS00390 PF13380 CoA binding domain AFER_RS00395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFER_RS00405 PF13393 Histidyl-tRNA synthetase AFER_RS00415 PF01979 Amidohydrolase family AFER_RS00415 PF13382 Adenine deaminase C-terminal domain AFER_RS00420 PF02803 Thiolase, C-terminal domain AFER_RS00420 PF00108 Thiolase, N-terminal domain AFER_RS00425 PF00591 Glycosyl transferase family, a/b domain AFER_RS00425 PF00117 Glutamine amidotransferase class-I AFER_RS00425 PF02885 Glycosyl transferase family, helical bundle domain AFER_RS00430 PF00069 Protein kinase domain AFER_RS00430 PF03793 PASTA domain AFER_RS00435 PF00069 Protein kinase domain AFER_RS00435 PF03793 PASTA domain AFER_RS00440 PF00905 Penicillin binding protein transpeptidase domain AFER_RS00470 PF00171 Aldehyde dehydrogenase family AFER_RS00470 PF01575 MaoC like domain AFER_RS00495 PF00800 Prephenate dehydratase AFER_RS00500 PF00731 AIR carboxylase AFER_RS00505 PF01969 Protein of unknown function DUF111 AFER_RS00510 PF07859 alpha/beta hydrolase fold AFER_RS00530 PF13662 Toprim domain AFER_RS00530 PF02132 RecR protein AFER_RS00540 PF00107 Zinc-binding dehydrogenase AFER_RS00540 PF08240 Alcohol dehydrogenase GroES-like domain AFER_RS00545 PF00108 Thiolase, N-terminal domain AFER_RS00545 PF02803 Thiolase, C-terminal domain AFER_RS00550 PF00534 Glycosyl transferases group 1 AFER_RS00550 PF08323 Starch synthase catalytic domain AFER_RS00555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFER_RS00560 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFER_RS00570 PF13840 ACT domain AFER_RS00570 PF00696 Amino acid kinase family AFER_RS00570 PF01842 ACT domain AFER_RS00575 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFER_RS00575 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFER_RS00580 PF00669 Bacterial flagellin N-terminal helical region AFER_RS00580 PF00700 Bacterial flagellin C-terminal helical region AFER_RS00580 PF07196 Flagellin hook IN motif AFER_RS00585 PF07195 Flagellar hook-associated protein 2 C-terminus AFER_RS00585 PF07196 Flagellin hook IN motif AFER_RS00585 PF02465 Flagellar hook-associated protein 2 N-terminus AFER_RS00610 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AFER_RS00610 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AFER_RS00615 PF00101 Ribulose bisphosphate carboxylase, small chain AFER_RS00635 PF00936 BMC domain AFER_RS00640 PF00936 BMC domain AFER_RS00645 PF00936 BMC domain AFER_RS00660 PF00376 MerR family regulatory protein AFER_RS00660 PF13614 AAA domain AFER_RS00670 PF07728 AAA domain (dynein-related subfamily) AFER_RS00670 PF08406 CbbQ/NirQ/NorQ C-terminal AFER_RS00680 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AFER_RS00685 PF00460 Flagella basal body rod protein AFER_RS00700 PF08345 Flagellar M-ring protein C-terminal AFER_RS00700 PF01514 Secretory protein of YscJ/FliF family AFER_RS00705 PF14842 FliG N-terminal domain AFER_RS00705 PF14841 FliG middle domain AFER_RS00705 PF01706 FliG C-terminal domain AFER_RS00715 PF18269 T3SS EscN ATPase C-terminal domain AFER_RS00715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFER_RS00715 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFER_RS00725 PF01551 Peptidase family M23 AFER_RS00725 PF01464 Transglycosylase SLT domain AFER_RS00725 PF10145 Phage-related minor tail protein AFER_RS00740 PF07559 Flagellar basal body protein FlaE AFER_RS00740 PF00460 Flagella basal body rod protein AFER_RS00740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFER_RS00750 PF01618 MotA/TolQ/ExbB proton channel family AFER_RS00755 PF13677 Membrane MotB of proton-channel complex MotA/MotB AFER_RS00755 PF00691 OmpA family AFER_RS00775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFER_RS00785 PF01527 Transposase AFER_RS00790 PF00665 Integrase core domain AFER_RS00790 PF13333 Integrase core domain AFER_RS00790 PF13276 HTH-like domain AFER_RS00795 PF00813 FliP family AFER_RS00800 PF01313 Bacterial export proteins, family 3 AFER_RS00810 PF01312 FlhB HrpN YscU SpaS Family AFER_RS00815 PF00771 FHIPEP family AFER_RS00830 PF00581 Rhodanese-like domain AFER_RS00835 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS00840 PF04055 Radical SAM superfamily AFER_RS00845 PF00834 Ribulose-phosphate 3 epimerase family AFER_RS00850 PF02779 Transketolase, pyrimidine binding domain AFER_RS00850 PF02780 Transketolase, C-terminal domain AFER_RS00850 PF00456 Transketolase, thiamine diphosphate binding domain AFER_RS00855 PF00485 Phosphoribulokinase / Uridine kinase family AFER_RS00860 PF02308 MgtC family AFER_RS00865 PF00356 Bacterial regulatory proteins, lacI family AFER_RS00870 PF01229 Glycosyl hydrolases family 39 AFER_RS00875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFER_RS00880 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS00885 PF12911 N-terminal TM domain of oligopeptide transport permease C AFER_RS00885 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS00900 PF03466 LysR substrate binding domain AFER_RS00900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFER_RS00905 PF00274 Fructose-bisphosphate aldolase class-I AFER_RS00920 PF00196 Bacterial regulatory proteins, luxR family AFER_RS00920 PF00072 Response regulator receiver domain AFER_RS00925 PF07730 Histidine kinase AFER_RS00925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS00945 PF01738 Dienelactone hydrolase family AFER_RS00960 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFER_RS00965 PF02403 Seryl-tRNA synthetase N-terminal domain AFER_RS00965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFER_RS00970 PF13732 Domain of unknown function (DUF4162) AFER_RS00970 PF00005 ABC transporter AFER_RS00985 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFER_RS01005 PF08240 Alcohol dehydrogenase GroES-like domain AFER_RS01005 PF00107 Zinc-binding dehydrogenase AFER_RS01010 PF01266 FAD dependent oxidoreductase AFER_RS01020 PF00486 Transcriptional regulatory protein, C terminal AFER_RS01020 PF00072 Response regulator receiver domain AFER_RS01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS01025 PF00512 His Kinase A (phospho-acceptor) domain AFER_RS01075 PF02623 FliW protein AFER_RS01085 PF02599 Global regulator protein family AFER_RS01090 PF07194 P2 response regulator binding domain AFER_RS01090 PF01584 CheW-like domain AFER_RS01090 PF02895 Signal transducing histidine kinase, homodimeric domain AFER_RS01090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS01090 PF01627 Hpt domain AFER_RS01095 PF01584 CheW-like domain AFER_RS01100 PF01339 CheB methylesterase AFER_RS01100 PF00072 Response regulator receiver domain AFER_RS01105 PF03705 CheR methyltransferase, all-alpha domain AFER_RS01105 PF01739 CheR methyltransferase, SAM binding domain AFER_RS01110 PF07729 FCD domain AFER_RS01110 PF00392 Bacterial regulatory proteins, gntR family AFER_RS01115 PF00072 Response regulator receiver domain AFER_RS01130 PF00535 Glycosyl transferase family 2 AFER_RS01140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFER_RS01140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFER_RS01145 PF01642 Methylmalonyl-CoA mutase AFER_RS01145 PF02310 B12 binding domain AFER_RS01155 PF01202 Shikimate kinase AFER_RS01180 PF02632 BioY family AFER_RS01185 PF01039 Carboxyl transferase domain AFER_RS01195 PF01425 Amidase AFER_RS01205 PF10609 NUBPL iron-transfer P-loop NTPase AFER_RS01205 PF01883 Iron-sulfur cluster assembly protein AFER_RS01230 PF02374 Anion-transporting ATPase AFER_RS01245 PF01521 Iron-sulphur cluster biosynthesis AFER_RS01250 PF00486 Transcriptional regulatory protein, C terminal AFER_RS01255 PF03951 Glutamine synthetase, beta-Grasp domain AFER_RS01255 PF00120 Glutamine synthetase, catalytic domain AFER_RS01260 PF03951 Glutamine synthetase, beta-Grasp domain AFER_RS01260 PF00120 Glutamine synthetase, catalytic domain AFER_RS01275 PF02540 NAD synthase AFER_RS01275 PF00795 Carbon-nitrogen hydrolase AFER_RS01285 PF00140 Sigma-70 factor, region 1.2 AFER_RS01285 PF03979 Sigma-70 factor, region 1.1 AFER_RS01285 PF04545 Sigma-70, region 4 AFER_RS01285 PF04542 Sigma-70 region 2 AFER_RS01285 PF04539 Sigma-70 region 3 AFER_RS01290 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFER_RS01290 PF01488 Shikimate / quinate 5-dehydrogenase AFER_RS01290 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFER_RS01295 PF03900 Porphobilinogen deaminase, C-terminal domain AFER_RS01295 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFER_RS01300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFER_RS01300 PF02602 Uroporphyrinogen-III synthase HemD AFER_RS01305 PF00490 Delta-aminolevulinic acid dehydratase AFER_RS01310 PF00202 Aminotransferase class-III AFER_RS01315 PF00654 Voltage gated chloride channel AFER_RS01320 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS01350 PF02803 Thiolase, C-terminal domain AFER_RS01350 PF00108 Thiolase, N-terminal domain AFER_RS01355 PF00578 AhpC/TSA family AFER_RS01365 PF02585 GlcNAc-PI de-N-acetylase AFER_RS01370 PF08240 Alcohol dehydrogenase GroES-like domain AFER_RS01370 PF00107 Zinc-binding dehydrogenase AFER_RS01375 PF00248 Aldo/keto reductase family AFER_RS01390 PF00291 Pyridoxal-phosphate dependent enzyme AFER_RS01395 PF00005 ABC transporter AFER_RS01395 PF00664 ABC transporter transmembrane region AFER_RS01400 PF00881 Nitroreductase family AFER_RS01410 PF00491 Arginase family AFER_RS01430 PF13276 HTH-like domain AFER_RS01430 PF00665 Integrase core domain AFER_RS01435 PF01527 Transposase AFER_RS01475 PF12805 FUSC-like inner membrane protein yccS AFER_RS01480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFER_RS01480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFER_RS01485 PF00271 Helicase conserved C-terminal domain AFER_RS01485 PF00270 DEAD/DEAH box helicase AFER_RS01500 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS01510 PF00690 Cation transporter/ATPase, N-terminus AFER_RS01510 PF00689 Cation transporting ATPase, C-terminus AFER_RS01515 PF00582 Universal stress protein family AFER_RS01520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFER_RS01520 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS01525 PF01475 Ferric uptake regulator family AFER_RS01530 PF00141 Peroxidase AFER_RS01535 PF01906 Putative heavy-metal-binding AFER_RS01540 PF05977 Transmembrane secretion effector AFER_RS01560 PF00665 Integrase core domain AFER_RS01560 PF13276 HTH-like domain AFER_RS01560 PF13333 Integrase core domain AFER_RS01565 PF01527 Transposase AFER_RS01575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFER_RS01575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFER_RS01575 PF02770 Acyl-CoA dehydrogenase, middle domain AFER_RS01580 PF01406 tRNA synthetases class I (C) catalytic domain AFER_RS01580 PF09190 DALR domain AFER_RS01585 PF00133 tRNA synthetases class I (I, L, M and V) AFER_RS01585 PF08264 Anticodon-binding domain of tRNA AFER_RS01590 PF01566 Natural resistance-associated macrophage protein AFER_RS01595 PF01022 Bacterial regulatory protein, arsR family AFER_RS01605 PF17863 AAA lid domain AFER_RS01605 PF01078 Magnesium chelatase, subunit ChlI AFER_RS01610 PF02910 Fumarate reductase flavoprotein C-term AFER_RS01610 PF00890 FAD binding domain AFER_RS01615 PF13085 2Fe-2S iron-sulfur cluster binding domain AFER_RS01635 PF02467 Transcription factor WhiB AFER_RS01640 PF02310 B12 binding domain AFER_RS01645 PF08442 ATP-grasp domain AFER_RS01645 PF00549 CoA-ligase AFER_RS01650 PF02629 CoA binding domain AFER_RS01650 PF00549 CoA-ligase AFER_RS01655 PF00551 Formyl transferase AFER_RS01660 PF02142 MGS-like domain AFER_RS01660 PF01808 AICARFT/IMPCHase bienzyme AFER_RS01665 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFER_RS01665 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFER_RS01670 PF02219 Methylenetetrahydrofolate reductase AFER_RS01675 PF00083 Sugar (and other) transporter AFER_RS01695 PF02467 Transcription factor WhiB AFER_RS01700 PF02971 Formiminotransferase domain AFER_RS01700 PF07837 Formiminotransferase domain, N-terminal subdomain AFER_RS01710 PF16363 GDP-mannose 4,6 dehydratase AFER_RS01715 PF00005 ABC transporter AFER_RS01715 PF13732 Domain of unknown function (DUF4162) AFER_RS01725 PF01578 Cytochrome C assembly protein AFER_RS01730 PF03100 CcmE AFER_RS01735 PF01578 Cytochrome C assembly protein AFER_RS01735 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AFER_RS01740 PF08534 Redoxin AFER_RS01750 PF00174 Oxidoreductase molybdopterin binding domain AFER_RS01755 PF00083 Sugar (and other) transporter AFER_RS01760 PF00196 Bacterial regulatory proteins, luxR family AFER_RS01775 PF00005 ABC transporter AFER_RS01790 PF10609 NUBPL iron-transfer P-loop NTPase AFER_RS01790 PF01883 Iron-sulfur cluster assembly protein AFER_RS01800 PF02374 Anion-transporting ATPase AFER_RS01815 PF12282 Signal transduction histidine kinase AFER_RS01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS01815 PF07568 Histidine kinase AFER_RS01820 PF01012 Electron transfer flavoprotein domain AFER_RS01825 PF00766 Electron transfer flavoprotein FAD-binding domain AFER_RS01825 PF01012 Electron transfer flavoprotein domain AFER_RS01830 PF09055 Nickel-containing superoxide dismutase AFER_RS01835 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFER_RS01835 PF03807 NADP oxidoreductase coenzyme F420-dependent AFER_RS01840 PF00534 Glycosyl transferases group 1 AFER_RS01840 PF13439 Glycosyltransferase Family 4 AFER_RS01855 PF13439 Glycosyltransferase Family 4 AFER_RS01860 PF01494 FAD binding domain AFER_RS01865 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFER_RS01870 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFER_RS01875 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFER_RS01880 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFER_RS01890 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFER_RS01890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFER_RS01890 PF10531 SLBB domain AFER_RS01895 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFER_RS01895 PF00384 Molybdopterin oxidoreductase AFER_RS01895 PF01568 Molydopterin dinucleotide binding domain AFER_RS01900 PF00146 NADH dehydrogenase AFER_RS01905 PF12838 4Fe-4S dicluster domain AFER_RS01910 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFER_RS01915 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFER_RS01920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFER_RS01920 PF00361 Proton-conducting membrane transporter AFER_RS01925 PF00361 Proton-conducting membrane transporter AFER_RS01930 PF00361 Proton-conducting membrane transporter AFER_RS01940 PF01336 OB-fold nucleic acid binding domain AFER_RS01940 PF09924 Uncharacterised conserved protein (DUF2156) AFER_RS01940 PF16995 Transmembrane region of lysyl-tRNA synthetase AFER_RS01940 PF00152 tRNA synthetases class II (D, K and N) AFER_RS01945 PF04461 Protein of unknown function (DUF520) AFER_RS01965 PF00583 Acetyltransferase (GNAT) family AFER_RS01980 PF00471 Ribosomal protein L33 AFER_RS02000 PF00467 KOW motif AFER_RS02000 PF02357 Transcription termination factor nusG AFER_RS02005 PF00298 Ribosomal protein L11, RNA binding domain AFER_RS02005 PF03946 Ribosomal protein L11, N-terminal domain AFER_RS02010 PF00687 Ribosomal protein L1p/L10e family AFER_RS02015 PF00466 Ribosomal protein L10 AFER_RS02020 PF16320 Ribosomal protein L7/L12 dimerisation domain AFER_RS02020 PF00542 Ribosomal protein L7/L12 C-terminal domain AFER_RS02025 PF10385 RNA polymerase beta subunit external 1 domain AFER_RS02025 PF04560 RNA polymerase Rpb2, domain 7 AFER_RS02025 PF00562 RNA polymerase Rpb2, domain 6 AFER_RS02025 PF04565 RNA polymerase Rpb2, domain 3 AFER_RS02025 PF04561 RNA polymerase Rpb2, domain 2 AFER_RS02025 PF04563 RNA polymerase beta subunit AFER_RS02030 PF04998 RNA polymerase Rpb1, domain 5 AFER_RS02030 PF05000 RNA polymerase Rpb1, domain 4 AFER_RS02030 PF04983 RNA polymerase Rpb1, domain 3 AFER_RS02030 PF04997 RNA polymerase Rpb1, domain 1 AFER_RS02030 PF00623 RNA polymerase Rpb1, domain 2 AFER_RS02035 PF00164 Ribosomal protein S12/S23 AFER_RS02040 PF00177 Ribosomal protein S7p/S5e AFER_RS02045 PF00679 Elongation factor G C-terminus AFER_RS02045 PF14492 Elongation Factor G, domain II AFER_RS02045 PF03764 Elongation factor G, domain IV AFER_RS02045 PF03144 Elongation factor Tu domain 2 AFER_RS02045 PF00009 Elongation factor Tu GTP binding domain AFER_RS02050 PF03143 Elongation factor Tu C-terminal domain AFER_RS02050 PF03144 Elongation factor Tu domain 2 AFER_RS02050 PF00009 Elongation factor Tu GTP binding domain AFER_RS02055 PF00338 Ribosomal protein S10p/S20e AFER_RS02060 PF00297 Ribosomal protein L3 AFER_RS02065 PF00573 Ribosomal protein L4/L1 family AFER_RS02070 PF00276 Ribosomal protein L23 AFER_RS02075 PF03947 Ribosomal Proteins L2, C-terminal domain AFER_RS02075 PF00181 Ribosomal Proteins L2, RNA binding domain AFER_RS02080 PF00203 Ribosomal protein S19 AFER_RS02085 PF00237 Ribosomal protein L22p/L17e AFER_RS02090 PF07650 KH domain AFER_RS02090 PF00189 Ribosomal protein S3, C-terminal domain AFER_RS02095 PF00252 Ribosomal protein L16p/L10e AFER_RS02100 PF00831 Ribosomal L29 protein AFER_RS02105 PF00366 Ribosomal protein S17 AFER_RS02110 PF00238 Ribosomal protein L14p/L23e AFER_RS02115 PF00467 KOW motif AFER_RS02115 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFER_RS02120 PF00281 Ribosomal protein L5 AFER_RS02120 PF00673 ribosomal L5P family C-terminus AFER_RS02125 PF00253 Ribosomal protein S14p/S29e AFER_RS02130 PF00410 Ribosomal protein S8 AFER_RS02135 PF00347 Ribosomal protein L6 AFER_RS02140 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFER_RS02145 PF03719 Ribosomal protein S5, C-terminal domain AFER_RS02145 PF00333 Ribosomal protein S5, N-terminal domain AFER_RS02150 PF00327 Ribosomal protein L30p/L7e AFER_RS02155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFER_RS02160 PF00344 SecY translocase AFER_RS02165 PF05191 Adenylate kinase, active site lid AFER_RS02170 PF00557 Metallopeptidase family M24 AFER_RS02175 PF01176 Translation initiation factor 1A / IF-1 AFER_RS02180 PF00416 Ribosomal protein S13/S18 AFER_RS02185 PF00411 Ribosomal protein S11 AFER_RS02190 PF01479 S4 domain AFER_RS02190 PF00163 Ribosomal protein S4/S9 N-terminal domain AFER_RS02195 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFER_RS02195 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFER_RS02195 PF01000 RNA polymerase Rpb3/RpoA insert domain AFER_RS02200 PF01196 Ribosomal protein L17 AFER_RS02210 PF00572 Ribosomal protein L13 AFER_RS02215 PF00380 Ribosomal protein S9/S16 AFER_RS02220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFER_RS02220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFER_RS02220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFER_RS02220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFER_RS02225 PF01380 SIS domain AFER_RS02235 PF03466 LysR substrate binding domain AFER_RS02235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFER_RS02240 PF01648 4'-phosphopantetheinyl transferase superfamily AFER_RS02245 PF01256 Carbohydrate kinase AFER_RS02245 PF03853 YjeF-related protein N-terminus AFER_RS02250 PF00842 Alanine racemase, C-terminal domain AFER_RS02250 PF01168 Alanine racemase, N-terminal domain AFER_RS02255 PF03167 Uracil DNA glycosylase superfamily AFER_RS02260 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFER_RS02270 PF00583 Acetyltransferase (GNAT) family AFER_RS02275 PF00814 Glycoprotease family AFER_RS02280 PF00166 Chaperonin 10 Kd subunit AFER_RS02285 PF00118 TCP-1/cpn60 chaperonin family AFER_RS02295 PF01527 Transposase AFER_RS02300 PF00665 Integrase core domain AFER_RS02300 PF13276 HTH-like domain AFER_RS02340 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFER_RS02350 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFER_RS02360 PF00478 IMP dehydrogenase / GMP reductase domain AFER_RS02365 PF02540 NAD synthase AFER_RS02365 PF00117 Glutamine amidotransferase class-I AFER_RS02365 PF00958 GMP synthase C terminal domain AFER_RS02370 PF00580 UvrD/REP helicase N-terminal domain AFER_RS02370 PF13361 UvrD-like helicase C-terminal domain AFER_RS02385 PF00535 Glycosyl transferase family 2 AFER_RS02415 PF01593 Flavin containing amine oxidoreductase AFER_RS02425 PF01523 Putative modulator of DNA gyrase AFER_RS02435 PF01769 Divalent cation transporter AFER_RS02435 PF00571 CBS domain AFER_RS02435 PF03448 MgtE intracellular N domain AFER_RS02440 PF01566 Natural resistance-associated macrophage protein AFER_RS02455 PF02779 Transketolase, pyrimidine binding domain AFER_RS02455 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFER_RS02455 PF02780 Transketolase, C-terminal domain AFER_RS02495 PF00994 Probable molybdopterin binding domain AFER_RS02495 PF03454 MoeA C-terminal region (domain IV) AFER_RS02495 PF03453 MoeA N-terminal region (domain I and II) AFER_RS02500 PF00483 Nucleotidyl transferase AFER_RS02510 PF13439 Glycosyltransferase Family 4 AFER_RS02510 PF00534 Glycosyl transferases group 1 AFER_RS02530 PF01433 Peptidase family M1 domain AFER_RS02530 PF11838 ERAP1-like C-terminal domain AFER_RS02535 PF00294 pfkB family carbohydrate kinase AFER_RS02545 PF00723 Glycosyl hydrolases family 15 AFER_RS02550 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFER_RS02550 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFER_RS02555 PF00480 ROK family AFER_RS02560 PF07690 Major Facilitator Superfamily AFER_RS02585 PF00005 ABC transporter AFER_RS02590 PF00005 ABC transporter AFER_RS02590 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFER_RS02600 PF02653 Branched-chain amino acid transport system / permease component AFER_RS02605 PF00072 Response regulator receiver domain AFER_RS02605 PF12431 Transcriptional regulator AFER_RS02610 PF01527 Transposase AFER_RS02615 PF13276 HTH-like domain AFER_RS02615 PF00665 Integrase core domain AFER_RS02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS02620 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFER_RS02620 PF00989 PAS fold AFER_RS02620 PF17203 Single cache domain 3 AFER_RS02630 PF13333 Integrase core domain AFER_RS02630 PF00665 Integrase core domain AFER_RS02630 PF13276 HTH-like domain AFER_RS02650 PF13333 Integrase core domain AFER_RS02650 PF13276 HTH-like domain AFER_RS02650 PF00665 Integrase core domain AFER_RS02655 PF01527 Transposase AFER_RS02660 PF04185 Phosphoesterase family AFER_RS02665 PF00664 ABC transporter transmembrane region AFER_RS02665 PF00005 ABC transporter AFER_RS02670 PF00005 ABC transporter AFER_RS02670 PF00664 ABC transporter transmembrane region AFER_RS02675 PF02322 Cytochrome bd terminal oxidase subunit II AFER_RS02680 PF01654 Cytochrome bd terminal oxidase subunit I AFER_RS02685 PF00288 GHMP kinases N terminal domain AFER_RS02685 PF08544 GHMP kinases C terminal AFER_RS02690 PF00398 Ribosomal RNA adenine dimethylase AFER_RS02695 PF01026 TatD related DNase AFER_RS02700 PF08264 Anticodon-binding domain of tRNA AFER_RS02700 PF09334 tRNA synthetases class I (M) AFER_RS02705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFER_RS02715 PF06071 Protein of unknown function (DUF933) AFER_RS02715 PF01926 50S ribosome-binding GTPase AFER_RS02720 PF12002 MgsA AAA+ ATPase C terminal AFER_RS02720 PF16193 AAA C-terminal domain AFER_RS02720 PF00004 ATPase family associated with various cellular activities (AAA) AFER_RS02725 PF00152 tRNA synthetases class II (D, K and N) AFER_RS02725 PF01336 OB-fold nucleic acid binding domain AFER_RS02725 PF02938 GAD domain AFER_RS02730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFER_RS02740 PF02654 Cobalamin-5-phosphate synthase AFER_RS02745 PF03186 CobD/Cbib protein AFER_RS02750 PF01894 Uncharacterised protein family UPF0047 AFER_RS02755 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFER_RS02765 PF00326 Prolyl oligopeptidase family AFER_RS02765 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFER_RS02770 PF01458 Uncharacterized protein family (UPF0051) AFER_RS02800 PF01527 Transposase AFER_RS02810 PF00665 Integrase core domain AFER_RS02820 PF13333 Integrase core domain AFER_RS02820 PF13276 HTH-like domain AFER_RS02820 PF00665 Integrase core domain AFER_RS02840 PF00512 His Kinase A (phospho-acceptor) domain AFER_RS02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS02840 PF00672 HAMP domain AFER_RS02845 PF00486 Transcriptional regulatory protein, C terminal AFER_RS02845 PF00072 Response regulator receiver domain AFER_RS02850 PF13180 PDZ domain AFER_RS02855 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS02865 PF00355 Rieske [2Fe-2S] domain AFER_RS02870 PF00005 ABC transporter AFER_RS02875 PF14759 Reductase C-terminal AFER_RS02875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS02885 PF00005 ABC transporter AFER_RS02890 PF00266 Aminotransferase class-V AFER_RS02895 PF01592 NifU-like N terminal domain AFER_RS02920 PF02595 Glycerate kinase family AFER_RS02925 PF00171 Aldehyde dehydrogenase family AFER_RS02935 PF00202 Aminotransferase class-III AFER_RS02950 PF03144 Elongation factor Tu domain 2 AFER_RS02950 PF14492 Elongation Factor G, domain II AFER_RS02950 PF00679 Elongation factor G C-terminus AFER_RS02950 PF00009 Elongation factor Tu GTP binding domain AFER_RS02970 PF01593 Flavin containing amine oxidoreductase AFER_RS02975 PF01039 Carboxyl transferase domain AFER_RS02995 PF03176 MMPL family AFER_RS03000 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS03005 PF00501 AMP-binding enzyme AFER_RS03005 PF13193 AMP-binding enzyme C-terminal domain AFER_RS03020 PF01351 Ribonuclease HII AFER_RS03050 PF00561 alpha/beta hydrolase fold AFER_RS03050 PF00364 Biotin-requiring enzyme AFER_RS03055 PF01225 Mur ligase family, catalytic domain AFER_RS03055 PF02875 Mur ligase family, glutamate ligase domain AFER_RS03055 PF08245 Mur ligase middle domain AFER_RS03060 PF01820 D-ala D-ala ligase N-terminus AFER_RS03060 PF07478 D-ala D-ala ligase C-terminus AFER_RS03085 PF02515 CoA-transferase family III AFER_RS03095 PF02254 TrkA-N domain AFER_RS03095 PF07885 Ion channel AFER_RS03110 PF07722 Peptidase C26 AFER_RS03115 PF13419 Haloacid dehalogenase-like hydrolase AFER_RS03185 PF00892 EamA-like transporter family AFER_RS03190 PF00390 Malic enzyme, N-terminal domain AFER_RS03190 PF03949 Malic enzyme, NAD binding domain AFER_RS03200 PF02899 Phage integrase, N-terminal SAM-like domain AFER_RS03200 PF00589 Phage integrase family AFER_RS03205 PF04545 Sigma-70, region 4 AFER_RS03205 PF04542 Sigma-70 region 2 AFER_RS03205 PF04539 Sigma-70 region 3 AFER_RS03215 PF00318 Ribosomal protein S2 AFER_RS03220 PF00889 Elongation factor TS AFER_RS03225 PF00696 Amino acid kinase family AFER_RS03230 PF01765 Ribosome recycling factor AFER_RS03245 PF13288 DXP reductoisomerase C-terminal domain AFER_RS03245 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFER_RS03245 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFER_RS03250 PF02163 Peptidase family M50 AFER_RS03250 PF17820 PDZ domain AFER_RS03255 PF04551 GcpE protein AFER_RS03260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFER_RS03260 PF04073 Aminoacyl-tRNA editing domain AFER_RS03260 PF03129 Anticodon binding domain AFER_RS03265 PF17384 RimP C-terminal SH3 domain AFER_RS03265 PF02576 RimP N-terminal domain AFER_RS03270 PF00575 S1 RNA binding domain AFER_RS03270 PF13184 NusA-like KH domain AFER_RS03270 PF08529 NusA N-terminal domain AFER_RS03280 PF11987 Translation-initiation factor 2 AFER_RS03280 PF00009 Elongation factor Tu GTP binding domain AFER_RS03280 PF04760 Translation initiation factor IF-2, N-terminal region AFER_RS03285 PF02033 Ribosome-binding factor A AFER_RS03290 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFER_RS03290 PF09142 tRNA Pseudouridine synthase II, C terminal AFER_RS03290 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFER_RS03295 PF06574 FAD synthetase AFER_RS03295 PF01687 Riboflavin kinase AFER_RS03300 PF00312 Ribosomal protein S15 AFER_RS03305 PF01138 3' exoribonuclease family, domain 1 AFER_RS03305 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFER_RS03305 PF00013 KH domain AFER_RS03305 PF00575 S1 RNA binding domain AFER_RS03310 PF00459 Inositol monophosphatase family AFER_RS03315 PF05173 Dihydrodipicolinate reductase, C-terminus AFER_RS03315 PF01113 Dihydrodipicolinate reductase, N-terminus AFER_RS03320 PF00701 Dihydrodipicolinate synthetase family AFER_RS03325 PF17770 Ribonuclease J C-terminal domain AFER_RS03325 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFER_RS03325 PF12706 Beta-lactamase superfamily domain AFER_RS03330 PF17854 FtsK alpha domain AFER_RS03330 PF09397 Ftsk gamma domain AFER_RS03330 PF01580 FtsK/SpoIIIE family AFER_RS03335 PF00768 D-alanyl-D-alanine carboxypeptidase AFER_RS03340 PF00288 GHMP kinases N terminal domain AFER_RS03340 PF08544 GHMP kinases C terminal AFER_RS03345 PF01066 CDP-alcohol phosphatidyltransferase AFER_RS03350 PF02464 Competence-damaged protein AFER_RS03350 PF00994 Probable molybdopterin binding domain AFER_RS03350 PF18146 Damage-inducible protein CinA KH domain AFER_RS03355 PF00154 recA bacterial DNA recombination protein AFER_RS03360 PF00919 Uncharacterized protein family UPF0004 AFER_RS03360 PF04055 Radical SAM superfamily AFER_RS03375 PF01678 Diaminopimelate epimerase AFER_RS03380 PF01926 50S ribosome-binding GTPase AFER_RS03380 PF13167 GTP-binding GTPase N-terminal AFER_RS03380 PF16360 GTP-binding GTPase Middle Region AFER_RS03385 PF00155 Aminotransferase class I and II AFER_RS03390 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AFER_RS03390 PF14602 Hexapeptide repeat of succinyl-transferase AFER_RS03390 PF00132 Bacterial transferase hexapeptide (six repeats) AFER_RS03395 PF07687 Peptidase dimerisation domain AFER_RS03395 PF01546 Peptidase family M20/M25/M40 AFER_RS03400 PF13276 HTH-like domain AFER_RS03400 PF00665 Integrase core domain AFER_RS03405 PF01527 Transposase AFER_RS03415 PF00665 Integrase core domain AFER_RS03430 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS03435 PF00005 ABC transporter AFER_RS03440 PF01726 LexA DNA binding domain AFER_RS03440 PF00717 Peptidase S24-like AFER_RS03445 PF03477 ATP cone domain AFER_RS03470 PF13276 HTH-like domain AFER_RS03470 PF00665 Integrase core domain AFER_RS03475 PF01527 Transposase AFER_RS03480 PF01850 PIN domain AFER_RS03495 PF01212 Beta-eliminating lyase AFER_RS03500 PF02585 GlcNAc-PI de-N-acetylase AFER_RS03530 PF04191 Phospholipid methyltransferase AFER_RS03535 PF09529 Integral membrane protein (intg_mem_TP0381) AFER_RS03540 PF13333 Integrase core domain AFER_RS03540 PF00665 Integrase core domain AFER_RS03540 PF13276 HTH-like domain AFER_RS03555 PF01527 Transposase AFER_RS03560 PF00665 Integrase core domain AFER_RS03560 PF13276 HTH-like domain AFER_RS03565 PF02769 AIR synthase related protein, C-terminal domain AFER_RS03565 PF00586 AIR synthase related protein, N-terminal domain AFER_RS03570 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AFER_RS03570 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AFER_RS03595 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFER_RS03595 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFER_RS03600 PF01266 FAD dependent oxidoreductase AFER_RS03605 PF00202 Aminotransferase class-III AFER_RS03615 PF00672 HAMP domain AFER_RS03615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS03615 PF00512 His Kinase A (phospho-acceptor) domain AFER_RS03620 PF00072 Response regulator receiver domain AFER_RS03620 PF00486 Transcriptional regulatory protein, C terminal AFER_RS03630 PF00753 Metallo-beta-lactamase superfamily AFER_RS03630 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFER_RS03640 PF02627 Carboxymuconolactone decarboxylase family AFER_RS03650 PF18030 RimK PreATP-grasp domain AFER_RS03650 PF08443 RimK-like ATP-grasp domain AFER_RS03660 PF02581 Thiamine monophosphate synthase AFER_RS03670 PF00456 Transketolase, thiamine diphosphate binding domain AFER_RS03670 PF17831 Pyruvate dehydrogenase E1 component middle domain AFER_RS03675 PF00075 RNase H AFER_RS03680 PF00106 short chain dehydrogenase AFER_RS03685 PF00248 Aldo/keto reductase family AFER_RS03690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS03690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFER_RS03695 PF02817 e3 binding domain AFER_RS03695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFER_RS03695 PF00364 Biotin-requiring enzyme AFER_RS03700 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFER_RS03700 PF04055 Radical SAM superfamily AFER_RS03705 PF00557 Metallopeptidase family M24 AFER_RS03705 PF01321 Creatinase/Prolidase N-terminal domain AFER_RS03710 PF00595 PDZ domain AFER_RS03715 PF01923 Cobalamin adenosyltransferase AFER_RS03720 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFER_RS03720 PF00809 Pterin binding enzyme AFER_RS03720 PF02607 B12 binding domain AFER_RS03720 PF02574 Homocysteine S-methyltransferase AFER_RS03720 PF02310 B12 binding domain AFER_RS03725 PF00883 Cytosol aminopeptidase family, catalytic domain AFER_RS03725 PF02789 Cytosol aminopeptidase family, N-terminal domain AFER_RS03735 PF01642 Methylmalonyl-CoA mutase AFER_RS03735 PF02310 B12 binding domain AFER_RS03740 PF01329 Pterin 4 alpha carbinolamine dehydratase AFER_RS03745 PF00899 ThiF family AFER_RS03755 PF02785 Biotin carboxylase C-terminal domain AFER_RS03755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFER_RS03755 PF00364 Biotin-requiring enzyme AFER_RS03755 PF00289 Biotin carboxylase, N-terminal domain AFER_RS03765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFER_RS03765 PF02770 Acyl-CoA dehydrogenase, middle domain AFER_RS03765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFER_RS03770 PF00483 Nucleotidyl transferase AFER_RS03775 PF16363 GDP-mannose 4,6 dehydratase AFER_RS03780 PF04321 RmlD substrate binding domain AFER_RS03790 PF00483 Nucleotidyl transferase AFER_RS03795 PF16363 GDP-mannose 4,6 dehydratase AFER_RS03800 PF00881 Nitroreductase family AFER_RS03800 PF01996 F420-0:Gamma-glutamyl ligase AFER_RS03805 PF01933 Uncharacterised protein family UPF0052 AFER_RS03810 PF00534 Glycosyl transferases group 1 AFER_RS03810 PF13439 Glycosyltransferase Family 4 AFER_RS03820 PF13439 Glycosyltransferase Family 4 AFER_RS03820 PF00534 Glycosyl transferases group 1 AFER_RS03825 PF16363 GDP-mannose 4,6 dehydratase AFER_RS03830 PF00535 Glycosyl transferase family 2 AFER_RS03830 PF00534 Glycosyl transferases group 1 AFER_RS03875 PF00300 Histidine phosphatase superfamily (branch 1) AFER_RS03875 PF00293 NUDIX domain AFER_RS03895 PF09335 SNARE associated Golgi protein AFER_RS03915 PF05697 Bacterial trigger factor protein (TF) AFER_RS03915 PF05698 Bacterial trigger factor protein (TF) C-terminus AFER_RS03915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFER_RS03920 PF00574 Clp protease AFER_RS03925 PF10431 C-terminal, D2-small domain, of ClpB protein AFER_RS03925 PF07724 AAA domain (Cdc48 subfamily) AFER_RS03925 PF06689 ClpX C4-type zinc finger AFER_RS03935 PF00334 Nucleoside diphosphate kinase AFER_RS03955 PF00905 Penicillin binding protein transpeptidase domain AFER_RS03955 PF03717 Penicillin-binding Protein dimerisation domain AFER_RS03965 PF10150 Ribonuclease E/G family AFER_RS03970 PF00829 Ribosomal prokaryotic L21 protein AFER_RS03975 PF01016 Ribosomal L27 protein AFER_RS03980 PF09269 Domain of unknown function (DUF1967) AFER_RS03980 PF01018 GTP1/OBG AFER_RS03980 PF01926 50S ribosome-binding GTPase AFER_RS03985 PF00696 Amino acid kinase family AFER_RS03985 PF01472 PUA domain AFER_RS03995 PF04978 Protein of unknown function (DUF664) AFER_RS04000 PF00005 ABC transporter AFER_RS04005 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFER_RS04005 PF00005 ABC transporter AFER_RS04015 PF02653 Branched-chain amino acid transport system / permease component AFER_RS04025 PF00171 Aldehyde dehydrogenase family AFER_RS04045 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFER_RS04070 PF01467 Cytidylyltransferase-like AFER_RS04080 PF01474 Class-II DAHP synthetase family AFER_RS04110 PF00221 Aromatic amino acid lyase AFER_RS04120 PF00501 AMP-binding enzyme AFER_RS04120 PF13193 AMP-binding enzyme C-terminal domain AFER_RS04125 PF01903 CbiX AFER_RS04130 PF02570 Precorrin-8X methylmutase AFER_RS04135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFER_RS04135 PF14824 Sirohaem biosynthesis protein central AFER_RS04135 PF10414 Sirohaem synthase dimerisation region AFER_RS04145 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AFER_RS04145 PF12557 Cob(I)alamin adenosyltransferase N terminal AFER_RS04150 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFER_RS04150 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFER_RS04155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFER_RS04160 PF01888 CbiD AFER_RS04185 PF05649 Peptidase family M13 AFER_RS04185 PF01431 Peptidase family M13 AFER_RS04200 PF01494 FAD binding domain AFER_RS04205 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFER_RS04205 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFER_RS04210 PF02514 CobN/Magnesium Chelatase AFER_RS04215 PF13519 von Willebrand factor type A domain AFER_RS04215 PF17863 AAA lid domain AFER_RS04215 PF07728 AAA domain (dynein-related subfamily) AFER_RS04220 PF03167 Uracil DNA glycosylase superfamily AFER_RS04230 PF03707 Bacterial signalling protein N terminal repeat AFER_RS04230 PF00563 EAL domain AFER_RS04230 PF13188 PAS domain AFER_RS04230 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS04240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFER_RS04240 PF12838 4Fe-4S dicluster domain AFER_RS04240 PF00384 Molybdopterin oxidoreductase AFER_RS04240 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFER_RS04240 PF01568 Molydopterin dinucleotide binding domain AFER_RS04250 PF00676 Dehydrogenase E1 component AFER_RS04255 PF02779 Transketolase, pyrimidine binding domain AFER_RS04255 PF02780 Transketolase, C-terminal domain AFER_RS04260 PF00364 Biotin-requiring enzyme AFER_RS04260 PF02817 e3 binding domain AFER_RS04260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFER_RS04265 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS04265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFER_RS04270 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AFER_RS04270 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AFER_RS04280 PF01594 AI-2E family transporter AFER_RS04295 PF12697 Alpha/beta hydrolase family AFER_RS04300 PF02467 Transcription factor WhiB AFER_RS04305 PF02634 FdhD/NarQ family AFER_RS04330 PF01575 MaoC like domain AFER_RS04335 PF03976 Polyphosphate kinase 2 (PPK2) AFER_RS04345 PF01209 ubiE/COQ5 methyltransferase family AFER_RS04355 PF00005 ABC transporter AFER_RS04355 PF17755 UvrA DNA-binding domain AFER_RS04355 PF17760 UvrA interaction domain AFER_RS04360 PF01541 GIY-YIG catalytic domain AFER_RS04360 PF08459 UvrC Helix-hairpin-helix N-terminal AFER_RS04360 PF02151 UvrB/uvrC motif AFER_RS04365 PF01209 ubiE/COQ5 methyltransferase family AFER_RS04370 PF03668 P-loop ATPase protein family AFER_RS04375 PF01933 Uncharacterised protein family UPF0052 AFER_RS04380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFER_RS04380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFER_RS04385 PF00162 Phosphoglycerate kinase AFER_RS04390 PF00121 Triosephosphate isomerase AFER_RS04395 PF03840 Preprotein translocase SecG subunit AFER_RS04415 PF01914 MarC family integral membrane protein AFER_RS04435 PF00578 AhpC/TSA family AFER_RS04435 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFER_RS04440 PF00296 Luciferase-like monooxygenase AFER_RS04455 PF00929 Exonuclease AFER_RS04460 PF00535 Glycosyl transferase family 2 AFER_RS04465 PF00692 dUTPase AFER_RS04490 PF03793 PASTA domain AFER_RS04490 PF00069 Protein kinase domain AFER_RS04495 PF00120 Glutamine synthetase, catalytic domain AFER_RS04495 PF03951 Glutamine synthetase, beta-Grasp domain AFER_RS04510 PF05524 PEP-utilising enzyme, N-terminal AFER_RS04510 PF02896 PEP-utilising enzyme, TIM barrel domain AFER_RS04510 PF00391 PEP-utilising enzyme, mobile domain AFER_RS04515 PF00230 Major intrinsic protein AFER_RS04520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFER_RS04520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFER_RS04525 PF02733 Dak1 domain AFER_RS04530 PF02734 DAK2 domain AFER_RS04535 PF03610 PTS system fructose IIA component AFER_RS04535 PF00381 PTS HPr component phosphorylation site AFER_RS04535 PF00391 PEP-utilising enzyme, mobile domain AFER_RS04535 PF05524 PEP-utilising enzyme, N-terminal AFER_RS04540 PF04324 BFD-like [2Fe-2S] binding domain AFER_RS04540 PF01266 FAD dependent oxidoreductase AFER_RS04555 PF04309 Glycerol-3-phosphate responsive antiterminator AFER_RS04565 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS04565 PF12911 N-terminal TM domain of oligopeptide transport permease C AFER_RS04575 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS04580 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS04580 PF12911 N-terminal TM domain of oligopeptide transport permease C AFER_RS04590 PF00005 ABC transporter AFER_RS04590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFER_RS04595 PF01757 Acyltransferase family AFER_RS04600 PF00588 SpoU rRNA Methylase family AFER_RS04610 PF13344 Haloacid dehalogenase-like hydrolase AFER_RS04610 PF18407 GCN5-related N-acetyltransferase like domain AFER_RS04615 PF01791 DeoC/LacD family aldolase AFER_RS04635 PF03641 Possible lysine decarboxylase AFER_RS04640 PF04055 Radical SAM superfamily AFER_RS04665 PF08704 tRNA methyltransferase complex GCD14 subunit AFER_RS04675 PF00004 ATPase family associated with various cellular activities (AAA) AFER_RS04675 PF17758 Proteasomal ATPase OB N-terminal domain AFER_RS04675 PF16450 Proteasomal ATPase OB C-terminal domain AFER_RS04680 PF03136 Pup-ligase protein AFER_RS04690 PF00227 Proteasome subunit AFER_RS04695 PF00227 Proteasome subunit AFER_RS04700 PF03136 Pup-ligase protein AFER_RS04705 PF10502 Signal peptidase, peptidase S26 AFER_RS04715 PF00579 tRNA synthetases class I (W and Y) AFER_RS04720 PF02416 mttA/Hcf106 family AFER_RS04725 PF00902 Sec-independent protein translocase protein (TatC) AFER_RS04730 PF00271 Helicase conserved C-terminal domain AFER_RS04730 PF08148 DSHCT (NUC185) domain AFER_RS04730 PF00270 DEAD/DEAH box helicase AFER_RS04735 PF02511 Thymidylate synthase complementing protein AFER_RS04750 PF00293 NUDIX domain AFER_RS04815 PF00970 Oxidoreductase FAD-binding domain AFER_RS04815 PF00175 Oxidoreductase NAD-binding domain AFER_RS04815 PF00111 2Fe-2S iron-sulfur cluster binding domain AFER_RS04830 PF03364 Polyketide cyclase / dehydrase and lipid transport AFER_RS04835 PF00155 Aminotransferase class I and II AFER_RS04840 PF00155 Aminotransferase class I and II AFER_RS04840 PF00392 Bacterial regulatory proteins, gntR family AFER_RS04845 PF00202 Aminotransferase class-III AFER_RS04850 PF00171 Aldehyde dehydrogenase family AFER_RS04855 PF02547 Queuosine biosynthesis protein AFER_RS04860 PF01702 Queuine tRNA-ribosyltransferase AFER_RS04865 PF02355 Protein export membrane protein AFER_RS04865 PF07549 SecD/SecF GG Motif AFER_RS04870 PF02355 Protein export membrane protein AFER_RS04870 PF07549 SecD/SecF GG Motif AFER_RS04875 PF04607 Region found in RelA / SpoT proteins AFER_RS04875 PF02824 TGS domain AFER_RS04875 PF13291 ACT domain AFER_RS04880 PF13520 Amino acid permease AFER_RS04895 PF02272 DHHA1 domain AFER_RS04895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFER_RS04895 PF01411 tRNA synthetases class II (A) AFER_RS04900 PF03652 Holliday junction resolvase AFER_RS04910 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFER_RS04910 PF08501 Shikimate dehydrogenase substrate binding domain AFER_RS04920 PF01098 Cell cycle protein AFER_RS04930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFER_RS04930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFER_RS04935 PF00890 FAD binding domain AFER_RS04935 PF02910 Fumarate reductase flavoprotein C-term AFER_RS04940 PF02445 Quinolinate synthetase A protein AFER_RS04950 PF01206 Sulfurtransferase TusA AFER_RS04970 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS04970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFER_RS04980 PF13183 4Fe-4S dicluster domain AFER_RS04980 PF02754 Cysteine-rich domain AFER_RS04985 PF01012 Electron transfer flavoprotein domain AFER_RS04990 PF01012 Electron transfer flavoprotein domain AFER_RS04990 PF00766 Electron transfer flavoprotein FAD-binding domain AFER_RS04995 PF02665 Nitrate reductase gamma subunit AFER_RS04995 PF13183 4Fe-4S dicluster domain AFER_RS04995 PF02754 Cysteine-rich domain AFER_RS05005 PF01597 Glycine cleavage H-protein AFER_RS05010 PF01597 Glycine cleavage H-protein AFER_RS05015 PF13686 DsrE/DsrF/DrsH-like family AFER_RS05025 PF13333 Integrase core domain AFER_RS05025 PF00665 Integrase core domain AFER_RS05025 PF13276 HTH-like domain AFER_RS05030 PF13333 Integrase core domain AFER_RS05030 PF00665 Integrase core domain AFER_RS05030 PF13276 HTH-like domain AFER_RS05035 PF01527 Transposase AFER_RS05040 PF01527 Transposase AFER_RS05045 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) AFER_RS05050 PF01867 CRISPR associated protein Cas1 AFER_RS05060 PF09704 CRISPR-associated protein (Cas_Cas5) AFER_RS05065 PF09344 CT1975-like protein AFER_RS05080 PF00270 DEAD/DEAH box helicase AFER_RS05080 PF18395 Cas3 C-terminal domain AFER_RS05080 PF18019 HD domain AFER_RS05090 PF00005 ABC transporter AFER_RS05095 PF02653 Branched-chain amino acid transport system / permease component AFER_RS05105 PF00356 Bacterial regulatory proteins, lacI family AFER_RS05110 PF00294 pfkB family carbohydrate kinase AFER_RS05115 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFER_RS05115 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFER_RS05115 PF10531 SLBB domain AFER_RS05135 PF03099 Biotin/lipoate A/B protein ligase family AFER_RS05140 PF01098 Cell cycle protein AFER_RS05145 PF13089 Polyphosphate kinase N-terminal domain AFER_RS05145 PF17941 Polyphosphate kinase C-terminal domain 1 AFER_RS05145 PF13090 Polyphosphate kinase C-terminal domain 2 AFER_RS05145 PF02503 Polyphosphate kinase middle domain AFER_RS05155 PF02541 Ppx/GppA phosphatase family AFER_RS05165 PF00342 Phosphoglucose isomerase AFER_RS05170 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFER_RS05175 PF00107 Zinc-binding dehydrogenase AFER_RS05180 PF01121 Dephospho-CoA kinase AFER_RS05190 PF17757 UvrB interaction domain AFER_RS05190 PF12344 Ultra-violet resistance protein B AFER_RS05190 PF02151 UvrB/uvrC motif AFER_RS05190 PF04851 Type III restriction enzyme, res subunit AFER_RS05190 PF00271 Helicase conserved C-terminal domain AFER_RS05195 PF00753 Metallo-beta-lactamase superfamily AFER_RS05215 PF16363 GDP-mannose 4,6 dehydratase AFER_RS05235 PF13247 4Fe-4S dicluster domain AFER_RS05235 PF12800 4Fe-4S binding domain AFER_RS05250 PF00535 Glycosyl transferase family 2 AFER_RS05255 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AFER_RS05255 PF02867 Ribonucleotide reductase, barrel domain AFER_RS05260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFER_RS05260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS05265 PF13193 AMP-binding enzyme C-terminal domain AFER_RS05265 PF00501 AMP-binding enzyme AFER_RS05270 PF00440 Bacterial regulatory proteins, tetR family AFER_RS05275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFER_RS05275 PF02770 Acyl-CoA dehydrogenase, middle domain AFER_RS05275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFER_RS05280 PF08608 Wyosine base formation AFER_RS05280 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFER_RS05285 PF01039 Carboxyl transferase domain AFER_RS05290 PF02785 Biotin carboxylase C-terminal domain AFER_RS05290 PF00289 Biotin carboxylase, N-terminal domain AFER_RS05290 PF00364 Biotin-requiring enzyme AFER_RS05290 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFER_RS05300 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS05305 PF00324 Amino acid permease AFER_RS05310 PF07690 Major Facilitator Superfamily AFER_RS05320 PF01161 Phosphatidylethanolamine-binding protein AFER_RS05335 PF01070 FMN-dependent dehydrogenase AFER_RS05350 PF00005 ABC transporter AFER_RS05360 PF01695 IstB-like ATP binding protein AFER_RS05380 PF10437 Bacterial lipoate protein ligase C-terminus AFER_RS05380 PF03099 Biotin/lipoate A/B protein ligase family AFER_RS05410 PF00005 ABC transporter AFER_RS05415 PF00005 ABC transporter AFER_RS05420 PF07690 Major Facilitator Superfamily AFER_RS05470 PF01112 Asparaginase AFER_RS05510 PF00132 Bacterial transferase hexapeptide (six repeats) AFER_RS05515 PF00005 ABC transporter AFER_RS05530 PF00575 S1 RNA binding domain AFER_RS05535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFER_RS05535 PF01367 5'-3' exonuclease, C-terminal SAM fold AFER_RS05535 PF00476 DNA polymerase family A AFER_RS05540 PF00072 Response regulator receiver domain AFER_RS05540 PF03861 ANTAR domain AFER_RS05545 PF00753 Metallo-beta-lactamase superfamily AFER_RS05560 PF01565 FAD binding domain AFER_RS05560 PF02913 FAD linked oxidases, C-terminal domain AFER_RS05565 PF00698 Acyl transferase domain AFER_RS05570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFER_RS05570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFER_RS05580 PF00550 Phosphopantetheine attachment site AFER_RS05585 PF00109 Beta-ketoacyl synthase, N-terminal domain AFER_RS05585 PF02801 Beta-ketoacyl synthase, C-terminal domain AFER_RS05590 PF00732 GMC oxidoreductase AFER_RS05590 PF05199 GMC oxidoreductase AFER_RS05595 PF03109 ABC1 family AFER_RS05600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFER_RS05600 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFER_RS05605 PF00290 Tryptophan synthase alpha chain AFER_RS05610 PF00291 Pyridoxal-phosphate dependent enzyme AFER_RS05615 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFER_RS05620 PF00218 Indole-3-glycerol phosphate synthase AFER_RS05625 PF07690 Major Facilitator Superfamily AFER_RS05630 PF00072 Response regulator receiver domain AFER_RS05630 PF00486 Transcriptional regulatory protein, C terminal AFER_RS05635 PF16736 Single Cache-like AFER_RS05635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS05635 PF00989 PAS fold AFER_RS05635 PF00512 His Kinase A (phospho-acceptor) domain AFER_RS05640 PF13188 PAS domain AFER_RS05640 PF00563 EAL domain AFER_RS05640 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS05640 PF03707 Bacterial signalling protein N terminal repeat AFER_RS05645 PF01571 Aminomethyltransferase folate-binding domain AFER_RS05650 PF04715 Anthranilate synthase component I, N terminal region AFER_RS05650 PF00425 chorismate binding enzyme AFER_RS05655 PF01502 Phosphoribosyl-AMP cyclohydrolase AFER_RS05665 PF00977 Histidine biosynthesis protein AFER_RS05670 PF00977 Histidine biosynthesis protein AFER_RS05675 PF00117 Glutamine amidotransferase class-I AFER_RS05680 PF00475 Imidazoleglycerol-phosphate dehydratase AFER_RS05685 PF00155 Aminotransferase class I and II AFER_RS05690 PF00815 Histidinol dehydrogenase AFER_RS05705 PF02887 Pyruvate kinase, alpha/beta domain AFER_RS05705 PF00391 PEP-utilising enzyme, mobile domain AFER_RS05705 PF00224 Pyruvate kinase, barrel domain AFER_RS05725 PF02347 Glycine cleavage system P-protein AFER_RS05730 PF02347 Glycine cleavage system P-protein AFER_RS05735 PF01571 Aminomethyltransferase folate-binding domain AFER_RS05735 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFER_RS05750 PF00483 Nucleotidyl transferase AFER_RS05755 PF01597 Glycine cleavage H-protein AFER_RS05760 PF16697 Inner membrane component of T3SS, cytoplasmic domain AFER_RS05765 PF00376 MerR family regulatory protein AFER_RS05775 PF02577 Bifunctional nuclease AFER_RS05780 PF02683 Cytochrome C biogenesis protein transmembrane region AFER_RS05785 PF07690 Major Facilitator Superfamily AFER_RS05795 PF02163 Peptidase family M50 AFER_RS05800 PF00589 Phage integrase family AFER_RS05800 PF02899 Phage integrase, N-terminal SAM-like domain AFER_RS05805 PF00293 NUDIX domain AFER_RS05810 PF00117 Glutamine amidotransferase class-I AFER_RS05810 PF06418 CTP synthase N-terminus AFER_RS05815 PF02463 RecF/RecN/SMC N terminal domain AFER_RS05820 PF01513 ATP-NAD kinase AFER_RS05825 PF01728 FtsJ-like methyltransferase AFER_RS05825 PF01479 S4 domain AFER_RS05845 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS05850 PF12911 N-terminal TM domain of oligopeptide transport permease C AFER_RS05850 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS05860 PF03816 Cell envelope-related transcriptional attenuator domain AFER_RS05865 PF00682 HMGL-like AFER_RS05870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFER_RS05870 PF00005 ABC transporter AFER_RS05880 PF13186 Iron-sulfur cluster-binding domain AFER_RS05880 PF04055 Radical SAM superfamily AFER_RS05885 PF13193 AMP-binding enzyme C-terminal domain AFER_RS05885 PF00501 AMP-binding enzyme AFER_RS05895 PF13193 AMP-binding enzyme C-terminal domain AFER_RS05895 PF00501 AMP-binding enzyme AFER_RS05900 PF01266 FAD dependent oxidoreductase AFER_RS05900 PF05690 Thiazole biosynthesis protein ThiG AFER_RS05905 PF05690 Thiazole biosynthesis protein ThiG AFER_RS05905 PF02597 ThiS family AFER_RS05910 PF05690 Thiazole biosynthesis protein ThiG AFER_RS05915 PF08543 Phosphomethylpyrimidine kinase AFER_RS05920 PF13188 PAS domain AFER_RS05920 PF03707 Bacterial signalling protein N terminal repeat AFER_RS05920 PF00563 EAL domain AFER_RS05920 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS05935 PF03358 NADPH-dependent FMN reductase AFER_RS05945 PF01266 FAD dependent oxidoreductase AFER_RS05970 PF00403 Heavy-metal-associated domain AFER_RS06005 PF08241 Methyltransferase domain AFER_RS06035 PF00486 Transcriptional regulatory protein, C terminal AFER_RS06035 PF00072 Response regulator receiver domain AFER_RS06040 PF13493 Domain of unknown function (DUF4118) AFER_RS06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS06040 PF02702 Osmosensitive K+ channel His kinase sensor domain AFER_RS06040 PF00512 His Kinase A (phospho-acceptor) domain AFER_RS06045 PF00512 His Kinase A (phospho-acceptor) domain AFER_RS06045 PF13493 Domain of unknown function (DUF4118) AFER_RS06045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFER_RS06045 PF02702 Osmosensitive K+ channel His kinase sensor domain AFER_RS06045 PF00582 Universal stress protein family AFER_RS06050 PF02669 K+-transporting ATPase, c chain AFER_RS06060 PF03814 Potassium-transporting ATPase A subunit AFER_RS06080 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFER_RS06095 PF04542 Sigma-70 region 2 AFER_RS06095 PF04545 Sigma-70, region 4 AFER_RS06110 PF02601 Exonuclease VII, large subunit AFER_RS06110 PF13742 OB-fold nucleic acid binding domain AFER_RS06120 PF00202 Aminotransferase class-III AFER_RS06130 PF00877 NlpC/P60 family AFER_RS06135 PF02515 CoA-transferase family III AFER_RS06140 PF01425 Amidase AFER_RS06150 PF02502 Ribose/Galactose Isomerase AFER_RS06155 PF10759 Protein of unknown function (DUF2587) AFER_RS06170 PF02082 Transcriptional regulator AFER_RS06180 PF00255 Glutathione peroxidase AFER_RS06185 PF00171 Aldehyde dehydrogenase family AFER_RS06205 PF00005 ABC transporter AFER_RS06215 PF03979 Sigma-70 factor, region 1.1 AFER_RS06215 PF00140 Sigma-70 factor, region 1.2 AFER_RS06215 PF04542 Sigma-70 region 2 AFER_RS06215 PF04539 Sigma-70 region 3 AFER_RS06215 PF04545 Sigma-70, region 4 AFER_RS06220 PF00849 RNA pseudouridylate synthase AFER_RS06225 PF01252 Signal peptidase (SPase) II AFER_RS06235 PF00133 tRNA synthetases class I (I, L, M and V) AFER_RS06235 PF08264 Anticodon-binding domain of tRNA AFER_RS06240 PF13520 Amino acid permease AFER_RS06250 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFER_RS06250 PF05491 RuvB C-terminal winged helix domain AFER_RS06250 PF17864 RuvB AAA lid domain AFER_RS06255 PF01330 RuvA N terminal domain AFER_RS06255 PF07499 RuvA, C-terminal domain AFER_RS06260 PF02075 Crossover junction endodeoxyribonuclease RuvC AFER_RS06265 PF08534 Redoxin AFER_RS06270 PF01709 Transcriptional regulator AFER_RS06275 PF01174 SNO glutamine amidotransferase family AFER_RS06280 PF01680 SOR/SNZ family AFER_RS06290 PF13439 Glycosyltransferase Family 4 AFER_RS06300 PF01066 CDP-alcohol phosphatidyltransferase AFER_RS06310 PF00679 Elongation factor G C-terminus AFER_RS06310 PF14492 Elongation Factor G, domain II AFER_RS06310 PF00009 Elongation factor Tu GTP binding domain AFER_RS06310 PF03764 Elongation factor G, domain IV AFER_RS06310 PF03144 Elongation factor Tu domain 2 AFER_RS06325 PF01230 HIT domain AFER_RS06330 PF03129 Anticodon binding domain AFER_RS06330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFER_RS06330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFER_RS06335 PF01406 tRNA synthetases class I (C) catalytic domain AFER_RS06355 PF05726 Pirin C-terminal cupin domain AFER_RS06355 PF02678 Pirin AFER_RS06360 PF01261 Xylose isomerase-like TIM barrel AFER_RS06370 PF02325 YGGT family AFER_RS06380 PF01168 Alanine racemase, N-terminal domain AFER_RS06390 PF12327 FtsZ family, C-terminal domain AFER_RS06390 PF00091 Tubulin/FtsZ family, GTPase domain AFER_RS06400 PF01565 FAD binding domain AFER_RS06400 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFER_RS06405 PF08245 Mur ligase middle domain AFER_RS06405 PF01225 Mur ligase family, catalytic domain AFER_RS06405 PF02875 Mur ligase family, glutamate ligase domain AFER_RS06415 PF08245 Mur ligase middle domain AFER_RS06415 PF02875 Mur ligase family, glutamate ligase domain AFER_RS06420 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFER_RS06420 PF00953 Glycosyl transferase family 4 AFER_RS06425 PF02875 Mur ligase family, glutamate ligase domain AFER_RS06425 PF01225 Mur ligase family, catalytic domain AFER_RS06425 PF08245 Mur ligase middle domain AFER_RS06430 PF00905 Penicillin binding protein transpeptidase domain AFER_RS06430 PF03717 Penicillin-binding Protein dimerisation domain AFER_RS06440 PF01795 MraW methylase family AFER_RS06445 PF02381 MraZ protein, putative antitoxin-like AFER_RS06485 PF01569 PAP2 superfamily AFER_RS06490 PF04539 Sigma-70 region 3 AFER_RS06490 PF00140 Sigma-70 factor, region 1.2 AFER_RS06490 PF04545 Sigma-70, region 4 AFER_RS06490 PF04542 Sigma-70 region 2 AFER_RS06495 PF10410 DnaB-helicase binding domain of primase AFER_RS06495 PF08275 DNA primase catalytic core, N-terminal domain AFER_RS06495 PF13662 Toprim domain AFER_RS06495 PF01807 CHC2 zinc finger AFER_RS06495 PF08278 DNA primase DnaG DnaB-binding AFER_RS06500 PF02896 PEP-utilising enzyme, TIM barrel domain AFER_RS06500 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFER_RS06500 PF00391 PEP-utilising enzyme, mobile domain AFER_RS06505 PF03129 Anticodon binding domain AFER_RS06505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFER_RS06520 PF01255 Putative undecaprenyl diphosphate synthase AFER_RS06525 PF08768 Domain of unknown function (DUF1794) AFER_RS06530 PF07650 KH domain AFER_RS06530 PF01926 50S ribosome-binding GTPase AFER_RS06535 PF00571 CBS domain AFER_RS06535 PF03471 Transporter associated domain AFER_RS06535 PF01595 Cyclin M transmembrane N-terminal domain AFER_RS06540 PF02130 Uncharacterized protein family UPF0054 AFER_RS06545 PF02562 PhoH-like protein AFER_RS06575 PF00437 Type II/IV secretion system protein AFER_RS06615 PF13350 Tyrosine phosphatase family AFER_RS06620 PF00501 AMP-binding enzyme AFER_RS06620 PF16177 Acetyl-coenzyme A synthetase N-terminus AFER_RS06620 PF13193 AMP-binding enzyme C-terminal domain AFER_RS06625 PF01184 GPR1/FUN34/yaaH family AFER_RS06640 PF04055 Radical SAM superfamily AFER_RS06655 PF00684 DnaJ central domain AFER_RS06655 PF01556 DnaJ C terminal domain AFER_RS06655 PF00226 DnaJ domain AFER_RS06660 PF01628 HrcA protein C terminal domain AFER_RS06660 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AFER_RS06665 PF01649 Ribosomal protein S20 AFER_RS06670 PF06421 GTP-binding protein LepA C-terminus AFER_RS06670 PF00009 Elongation factor Tu GTP binding domain AFER_RS06670 PF00679 Elongation factor G C-terminus AFER_RS06685 PF02424 ApbE family AFER_RS06700 PF03441 FAD binding domain of DNA photolyase AFER_RS06700 PF00875 DNA photolyase AFER_RS06705 PF00809 Pterin binding enzyme AFER_RS06710 PF00085 Thioredoxin AFER_RS06715 PF00248 Aldo/keto reductase family AFER_RS06720 PF00561 alpha/beta hydrolase fold AFER_RS06725 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AFER_RS06735 PF12704 MacB-like periplasmic core domain AFER_RS06735 PF00005 ABC transporter AFER_RS06735 PF02687 FtsX-like permease family AFER_RS06760 PF01527 Transposase AFER_RS06765 PF13333 Integrase core domain AFER_RS06765 PF00665 Integrase core domain AFER_RS06765 PF13276 HTH-like domain AFER_RS06775 PF00665 Integrase core domain AFER_RS06775 PF13276 HTH-like domain AFER_RS06775 PF13333 Integrase core domain AFER_RS06780 PF01527 Transposase AFER_RS06785 PF11867 Domain of unknown function (DUF3387) AFER_RS06785 PF18766 SWI2/SNF2 ATPase AFER_RS06785 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFER_RS06795 PF13603 Leucyl-tRNA synthetase, Domain 2 AFER_RS06795 PF00133 tRNA synthetases class I (I, L, M and V) AFER_RS06795 PF08264 Anticodon-binding domain of tRNA AFER_RS06795 PF09334 tRNA synthetases class I (M) AFER_RS06820 PF07729 FCD domain AFER_RS06820 PF00392 Bacterial regulatory proteins, gntR family AFER_RS06825 PF17912 MalK OB fold domain AFER_RS06825 PF00005 ABC transporter AFER_RS06830 PF00128 Alpha amylase, catalytic domain AFER_RS06835 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS06840 PF00528 Binding-protein-dependent transport system inner membrane component AFER_RS06850 PF00356 Bacterial regulatory proteins, lacI family AFER_RS06870 PF00132 Bacterial transferase hexapeptide (six repeats) AFER_RS06875 PF00291 Pyridoxal-phosphate dependent enzyme AFER_RS06880 PF00730 HhH-GPD superfamily base excision DNA repair protein AFER_RS06880 PF00633 Helix-hairpin-helix motif AFER_RS06880 PF14815 NUDIX domain AFER_RS06890 PF07690 Major Facilitator Superfamily AFER_RS06935 PF01039 Carboxyl transferase domain AFER_RS06940 PF01926 50S ribosome-binding GTPase AFER_RS06940 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFER_RS06950 PF02401 LytB protein AFER_RS06960 PF02224 Cytidylate kinase AFER_RS06965 PF01435 Peptidase family M48 AFER_RS06975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFER_RS06980 PF07736 Chorismate mutase type I AFER_RS06985 PF00849 RNA pseudouridylate synthase AFER_RS06985 PF01479 S4 domain AFER_RS06990 PF04079 Segregation and condensation complex subunit ScpB AFER_RS07005 PF02754 Cysteine-rich domain AFER_RS07005 PF13183 4Fe-4S dicluster domain AFER_RS07015 PF01565 FAD binding domain AFER_RS07015 PF02913 FAD linked oxidases, C-terminal domain AFER_RS07020 PF00106 short chain dehydrogenase AFER_RS07025 PF01966 HD domain AFER_RS07025 PF13286 Phosphohydrolase-associated domain AFER_RS07040 PF13193 AMP-binding enzyme C-terminal domain AFER_RS07040 PF00501 AMP-binding enzyme AFER_RS07045 PF01906 Putative heavy-metal-binding AFER_RS07055 PF02803 Thiolase, C-terminal domain AFER_RS07055 PF00108 Thiolase, N-terminal domain AFER_RS07060 PF03061 Thioesterase superfamily AFER_RS07070 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS07075 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS07080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFER_RS07080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFER_RS07090 PF00111 2Fe-2S iron-sulfur cluster binding domain AFER_RS07090 PF00970 Oxidoreductase FAD-binding domain AFER_RS07090 PF00175 Oxidoreductase NAD-binding domain AFER_RS07095 PF01619 Proline dehydrogenase AFER_RS07095 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AFER_RS07095 PF14850 DNA-binding domain of Proline dehydrogenase AFER_RS07095 PF00171 Aldehyde dehydrogenase family AFER_RS07120 PF12857 TOBE-like domain AFER_RS07120 PF00005 ABC transporter AFER_RS07185 PF08774 VRR-NUC domain AFER_RS07185 PF04851 Type III restriction enzyme, res subunit AFER_RS07190 PF01555 DNA methylase AFER_RS07190 PF18273 Type III R-M EcoP15I C-terminal domain AFER_RS07210 PF00665 Integrase core domain AFER_RS07210 PF13936 Helix-turn-helix domain AFER_RS07270 PF04343 Protein of unknown function, DUF488 AFER_RS07275 PF00330 Aconitase family (aconitate hydratase) AFER_RS07275 PF00694 Aconitase C-terminal domain AFER_RS07290 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFER_RS07300 PF01546 Peptidase family M20/M25/M40 AFER_RS07310 PF01175 Urocanase Rossmann-like domain AFER_RS07310 PF17392 Urocanase C-terminal domain AFER_RS07310 PF17391 Urocanase N-terminal domain AFER_RS07315 PF01979 Amidohydrolase family AFER_RS07360 PF17482 Phage tail sheath C-terminal domain AFER_RS07360 PF04984 Phage tail sheath protein subtilisin-like domain AFER_RS07385 PF09861 Lactate racemase N-terminal domain AFER_RS07390 PF08240 Alcohol dehydrogenase GroES-like domain AFER_RS07390 PF00107 Zinc-binding dehydrogenase AFER_RS07405 PF00083 Sugar (and other) transporter AFER_RS07410 PF01965 DJ-1/PfpI family AFER_RS07420 PF07690 Major Facilitator Superfamily AFER_RS07425 PF08361 MAATS-type transcriptional repressor, C-terminal region AFER_RS07425 PF00440 Bacterial regulatory proteins, tetR family AFER_RS07435 PF00155 Aminotransferase class I and II AFER_RS07445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFER_RS07445 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFER_RS07450 PF08353 Domain of unknown function (DUF1727) AFER_RS07450 PF08245 Mur ligase middle domain AFER_RS07455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFER_RS07455 PF03466 LysR substrate binding domain AFER_RS07460 PF00106 short chain dehydrogenase AFER_RS07470 PF00072 Response regulator receiver domain AFER_RS07470 PF00196 Bacterial regulatory proteins, luxR family AFER_RS07475 PF00582 Universal stress protein family AFER_RS07480 PF07690 Major Facilitator Superfamily AFER_RS07490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS07490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFER_RS07490 PF13247 4Fe-4S dicluster domain AFER_RS07525 PF00248 Aldo/keto reductase family AFER_RS07540 PF01425 Amidase AFER_RS07550 PF00270 DEAD/DEAH box helicase AFER_RS07550 PF00271 Helicase conserved C-terminal domain AFER_RS07555 PF00730 HhH-GPD superfamily base excision DNA repair protein AFER_RS07555 PF00633 Helix-hairpin-helix motif AFER_RS07560 PF00583 Acetyltransferase (GNAT) family AFER_RS07565 PF00266 Aminotransferase class-V AFER_RS07595 PF00591 Glycosyl transferase family, a/b domain AFER_RS07595 PF02885 Glycosyl transferase family, helical bundle domain AFER_RS07600 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS07600 PF00563 EAL domain AFER_RS07600 PF13185 GAF domain AFER_RS07610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFER_RS07610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFER_RS07610 PF02770 Acyl-CoA dehydrogenase, middle domain AFER_RS07615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFER_RS07615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFER_RS07625 PF02222 ATP-grasp domain AFER_RS07625 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFER_RS07630 PF00731 AIR carboxylase AFER_RS07685 PF01527 Transposase AFER_RS07690 PF00665 Integrase core domain AFER_RS07690 PF13276 HTH-like domain AFER_RS07710 PF07690 Major Facilitator Superfamily AFER_RS07715 PF00719 Inorganic pyrophosphatase AFER_RS07720 PF01106 NifU-like domain AFER_RS07725 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS07735 PF01053 Cys/Met metabolism PLP-dependent enzyme AFER_RS07740 PF10611 Protein of unknown function (DUF2469) AFER_RS07745 PF01245 Ribosomal protein L19 AFER_RS07750 PF01746 tRNA (Guanine-1)-methyltransferase AFER_RS07755 PF01782 RimM N-terminal domain AFER_RS07755 PF05239 PRC-barrel domain AFER_RS07765 PF00886 Ribosomal protein S16 AFER_RS07770 PF02978 Signal peptide binding domain AFER_RS07770 PF02881 SRP54-type protein, helical bundle domain AFER_RS07770 PF00448 SRP54-type protein, GTPase domain AFER_RS07775 PF00448 SRP54-type protein, GTPase domain AFER_RS07775 PF02881 SRP54-type protein, helical bundle domain AFER_RS07800 PF06827 Zinc finger found in FPG and IleRS AFER_RS07800 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFER_RS07800 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFER_RS07805 PF14622 Ribonuclease-III-like AFER_RS07805 PF00035 Double-stranded RNA binding motif AFER_RS07810 PF00550 Phosphopantetheine attachment site AFER_RS07815 PF02504 Fatty acid synthesis protein AFER_RS07830 PF01467 Cytidylyltransferase-like AFER_RS07840 PF00271 Helicase conserved C-terminal domain AFER_RS07840 PF00270 DEAD/DEAH box helicase AFER_RS07840 PF17191 RecG wedge domain AFER_RS07845 PF13684 Dihydroxyacetone kinase family AFER_RS07845 PF02734 DAK2 domain AFER_RS07850 PF00830 Ribosomal L28 family AFER_RS07855 PF00762 Ferrochelatase AFER_RS07865 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFER_RS07865 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFER_RS07870 PF01263 Aldose 1-epimerase AFER_RS07885 PF00033 Cytochrome b/b6/petB AFER_RS07885 PF00032 Cytochrome b(C-terminal)/b6/petD AFER_RS07890 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS07890 PF00563 EAL domain AFER_RS07890 PF03707 Bacterial signalling protein N terminal repeat AFER_RS07895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFER_RS07895 PF02770 Acyl-CoA dehydrogenase, middle domain AFER_RS07895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFER_RS07900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFER_RS07900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFER_RS07905 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFER_RS07915 PF00682 HMGL-like AFER_RS07915 PF08502 LeuA allosteric (dimerisation) domain AFER_RS07920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFER_RS07920 PF01842 ACT domain AFER_RS07920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFER_RS07925 PF00155 Aminotransferase class I and II AFER_RS07930 PF00266 Aminotransferase class-V AFER_RS07935 PF00694 Aconitase C-terminal domain AFER_RS07940 PF00330 Aconitase family (aconitate hydratase) AFER_RS07945 PF01272 Transcription elongation factor, GreA/GreB, C-term AFER_RS07945 PF03449 Transcription elongation factor, N-terminal AFER_RS07950 PF00180 Isocitrate/isopropylmalate dehydrogenase AFER_RS07955 PF01063 Amino-transferase class IV AFER_RS07960 PF08502 LeuA allosteric (dimerisation) domain AFER_RS07960 PF00682 HMGL-like AFER_RS07995 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS08010 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFER_RS08010 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFER_RS08015 PF10369 Small subunit of acetolactate synthase AFER_RS08015 PF01842 ACT domain AFER_RS08020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFER_RS08020 PF00205 Thiamine pyrophosphate enzyme, central domain AFER_RS08020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFER_RS08025 PF00920 Dehydratase family AFER_RS08030 PF02934 GatB/GatE catalytic domain AFER_RS08030 PF02637 GatB domain AFER_RS08035 PF01425 Amidase AFER_RS08040 PF02686 Glu-tRNAGln amidotransferase C subunit AFER_RS08050 PF03793 PASTA domain AFER_RS08050 PF00069 Protein kinase domain AFER_RS08055 PF03120 NAD-dependent DNA ligase OB-fold domain AFER_RS08055 PF00533 BRCA1 C Terminus (BRCT) domain AFER_RS08055 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFER_RS08055 PF12826 Helix-hairpin-helix motif AFER_RS08055 PF01653 NAD-dependent DNA ligase adenylation domain AFER_RS08075 PF01790 Prolipoprotein diacylglyceryl transferase AFER_RS08080 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFER_RS08080 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AFER_RS08085 PF00144 Beta-lactamase AFER_RS08090 PF00085 Thioredoxin AFER_RS08115 PF02625 XdhC and CoxI family AFER_RS08115 PF13478 XdhC Rossmann domain AFER_RS08130 PF00941 FAD binding domain in molybdopterin dehydrogenase AFER_RS08130 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFER_RS08135 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFER_RS08135 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFER_RS08140 PF01799 [2Fe-2S] binding domain AFER_RS08140 PF00111 2Fe-2S iron-sulfur cluster binding domain AFER_RS08150 PF01145 SPFH domain / Band 7 family AFER_RS08160 PF02653 Branched-chain amino acid transport system / permease component AFER_RS08165 PF00005 ABC transporter AFER_RS08170 PF13407 Periplasmic binding protein domain AFER_RS08175 PF00486 Transcriptional regulatory protein, C terminal AFER_RS08175 PF00072 Response regulator receiver domain AFER_RS08190 PF13361 UvrD-like helicase C-terminal domain AFER_RS08190 PF12705 PD-(D/E)XK nuclease superfamily AFER_RS08190 PF00580 UvrD/REP helicase N-terminal domain AFER_RS08200 PF04542 Sigma-70 region 2 AFER_RS08200 PF04545 Sigma-70, region 4 AFER_RS08220 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFER_RS08220 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFER_RS08240 PF03952 Enolase, N-terminal domain AFER_RS08240 PF00113 Enolase, C-terminal TIM barrel domain AFER_RS08245 PF03819 MazG nucleotide pyrophosphohydrolase domain AFER_RS08245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFER_RS08260 PF00271 Helicase conserved C-terminal domain AFER_RS08260 PF00270 DEAD/DEAH box helicase AFER_RS08260 PF02559 CarD-like/TRCF domain AFER_RS08260 PF03461 TRCF domain AFER_RS08260 PF17757 UvrB interaction domain AFER_RS08265 PF01195 Peptidyl-tRNA hydrolase AFER_RS08270 PF14693 Ribosomal protein TL5, C-terminal domain AFER_RS08270 PF01386 Ribosomal L25p family AFER_RS08275 PF14572 Phosphoribosyl synthetase-associated domain AFER_RS08275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFER_RS08290 PF00132 Bacterial transferase hexapeptide (six repeats) AFER_RS08290 PF12804 MobA-like NTP transferase domain AFER_RS08300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFER_RS08300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFER_RS08305 PF00326 Prolyl oligopeptidase family AFER_RS08305 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AFER_RS08310 PF01575 MaoC like domain AFER_RS08325 PF17862 AAA+ lid domain AFER_RS08325 PF06480 FtsH Extracellular AFER_RS08325 PF01434 Peptidase family M41 AFER_RS08325 PF00004 ATPase family associated with various cellular activities (AAA) AFER_RS08340 PF02585 GlcNAc-PI de-N-acetylase AFER_RS08350 PF14579 Helix-hairpin-helix motif AFER_RS08350 PF02811 PHP domain AFER_RS08350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFER_RS08350 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFER_RS08350 PF01336 OB-fold nucleic acid binding domain AFER_RS08365 PF00392 Bacterial regulatory proteins, gntR family AFER_RS08365 PF07702 UTRA domain AFER_RS08370 PF01612 3'-5' exonuclease AFER_RS08370 PF00570 HRDC domain AFER_RS08390 PF01850 PIN domain AFER_RS08395 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFER_RS08410 PF01479 S4 domain AFER_RS08410 PF00579 tRNA synthetases class I (W and Y) AFER_RS08415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFER_RS08415 PF16582 Middle domain of thiamine pyrophosphate AFER_RS08415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFER_RS08425 PF01040 UbiA prenyltransferase family AFER_RS08430 PF00501 AMP-binding enzyme AFER_RS08430 PF13193 AMP-binding enzyme C-terminal domain AFER_RS08465 PF00872 Transposase, Mutator family AFER_RS08470 PF12728 Helix-turn-helix domain AFER_RS08490 PF02811 PHP domain AFER_RS08490 PF14579 Helix-hairpin-helix motif AFER_RS08490 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFER_RS08490 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFER_RS08500 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFER_RS08505 PF16177 Acetyl-coenzyme A synthetase N-terminus AFER_RS08505 PF00501 AMP-binding enzyme AFER_RS08505 PF13193 AMP-binding enzyme C-terminal domain AFER_RS08520 PF14489 QueF-like protein AFER_RS08530 PF00892 EamA-like transporter family AFER_RS08540 PF02796 Helix-turn-helix domain of resolvase AFER_RS08540 PF00239 Resolvase, N terminal domain AFER_RS08585 PF02245 Methylpurine-DNA glycosylase (MPG) AFER_RS08590 PF00206 Lyase AFER_RS08590 PF14698 Argininosuccinate lyase C-terminal AFER_RS08595 PF00764 Arginosuccinate synthase AFER_RS08600 PF02863 Arginine repressor, C-terminal domain AFER_RS08600 PF01316 Arginine repressor, DNA binding domain AFER_RS08605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFER_RS08605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFER_RS08610 PF00202 Aminotransferase class-III AFER_RS08615 PF00696 Amino acid kinase family AFER_RS08620 PF01960 ArgJ family AFER_RS08625 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFER_RS08625 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFER_RS08640 PF04174 A circularly permuted ATPgrasp AFER_RS08650 PF08379 Bacterial transglutaminase-like N-terminal region AFER_RS08650 PF01841 Transglutaminase-like superfamily AFER_RS08665 PF01925 Sulfite exporter TauE/SafE AFER_RS08670 PF03147 Ferredoxin-fold anticodon binding domain AFER_RS08670 PF03484 tRNA synthetase B5 domain AFER_RS08670 PF03483 B3/4 domain AFER_RS08670 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFER_RS08670 PF01588 Putative tRNA binding domain AFER_RS08675 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFER_RS08675 PF01409 tRNA synthetases class II core domain (F) AFER_RS08680 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFER_RS08680 PF00588 SpoU rRNA Methylase family AFER_RS08685 PF00453 Ribosomal protein L20 AFER_RS08690 PF01632 Ribosomal protein L35 AFER_RS08695 PF05198 Translation initiation factor IF-3, N-terminal domain AFER_RS08695 PF00707 Translation initiation factor IF-3, C-terminal domain AFER_RS08710 PF08029 HisG, C-terminal domain AFER_RS08710 PF01634 ATP phosphoribosyltransferase AFER_RS08715 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFER_RS08720 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFER_RS08720 PF00925 GTP cyclohydrolase II AFER_RS08725 PF00677 Lumazine binding domain AFER_RS08730 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFER_RS08730 PF01872 RibD C-terminal domain AFER_RS08740 PF02911 Formyl transferase, C-terminal domain AFER_RS08740 PF00551 Formyl transferase AFER_RS08745 PF01327 Polypeptide deformylase AFER_RS08765 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFER_RS08765 PF02772 S-adenosylmethionine synthetase, central domain AFER_RS08765 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFER_RS08770 PF02441 Flavoprotein AFER_RS08770 PF04127 DNA / pantothenate metabolism flavoprotein AFER_RS08775 PF01192 RNA polymerase Rpb6 AFER_RS08780 PF00625 Guanylate kinase AFER_RS08790 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFER_RS08795 PF01180 Dihydroorotate dehydrogenase AFER_RS08800 PF02142 MGS-like domain AFER_RS08800 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFER_RS08800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFER_RS08805 PF00117 Glutamine amidotransferase class-I AFER_RS08805 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFER_RS08810 PF01979 Amidohydrolase family AFER_RS08815 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFER_RS08815 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFER_RS08820 PF00156 Phosphoribosyl transferase domain AFER_RS08835 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFER_RS08855 PF01040 UbiA prenyltransferase family AFER_RS08860 PF01321 Creatinase/Prolidase N-terminal domain AFER_RS08860 PF00557 Metallopeptidase family M24 AFER_RS08865 PF09285 Elongation factor P, C-terminal AFER_RS08865 PF08207 Elongation factor P (EF-P) KOW-like domain AFER_RS08865 PF01132 Elongation factor P (EF-P) OB domain AFER_RS08870 PF01029 NusB family AFER_RS08880 PF01220 Dehydroquinase class II AFER_RS08885 PF01761 3-dehydroquinate synthase AFER_RS08890 PF01264 Chorismate synthase AFER_RS08905 PF01047 MarR family AFER_RS08910 PF04264 YceI-like domain AFER_RS08920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFER_RS08920 PF18603 L-amino acid ligase C-terminal domain 2 AFER_RS08930 PF00580 UvrD/REP helicase N-terminal domain AFER_RS08930 PF13361 UvrD-like helicase C-terminal domain AFER_RS08935 PF03372 Endonuclease/Exonuclease/phosphatase family AFER_RS08940 PF07977 FabA-like domain AFER_RS08950 PF02779 Transketolase, pyrimidine binding domain AFER_RS08950 PF16078 2-oxoglutarate dehydrogenase N-terminus AFER_RS08950 PF00676 Dehydrogenase E1 component AFER_RS08950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFER_RS08950 PF16870 2-oxoglutarate dehydrogenase C-terminal AFER_RS08960 PF00781 Diacylglycerol kinase catalytic domain AFER_RS08965 PF08338 Domain of unknown function (DUF1731) AFER_RS08965 PF01370 NAD dependent epimerase/dehydratase family AFER_RS08970 PF00011 Hsp20/alpha crystallin family AFER_RS08975 PF03109 ABC1 family AFER_RS08985 PF01040 UbiA prenyltransferase family AFER_RS08990 PF01565 FAD binding domain AFER_RS08990 PF04030 D-arabinono-1,4-lactone oxidase AFER_RS08995 PF00106 short chain dehydrogenase AFER_RS09000 PF08486 Stage II sporulation protein AFER_RS09025 PF00005 ABC transporter AFER_RS09030 PF01061 ABC-2 type transporter AFER_RS09035 PF00574 Clp protease AFER_RS09045 PF01725 Ham1 family AFER_RS09050 PF01138 3' exoribonuclease family, domain 1 AFER_RS09050 PF03725 3' exoribonuclease family, domain 2 AFER_RS09055 PF01177 Asp/Glu/Hydantoin racemase AFER_RS09065 PF01668 SmpB protein AFER_RS09090 PF02687 FtsX-like permease family AFER_RS09090 PF18075 FtsX extracellular domain AFER_RS09095 PF00005 ABC transporter AFER_RS09100 PF03462 PCRF domain AFER_RS09100 PF00472 RF-1 domain AFER_RS09105 PF07516 SecA Wing and Scaffold domain AFER_RS09105 PF01043 SecA preprotein cross-linking domain AFER_RS09105 PF07517 SecA DEAD-like domain AFER_RS09105 PF02810 SEC-C motif AFER_RS09110 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AFER_RS09110 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFER_RS09115 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFER_RS09115 PF05221 S-adenosyl-L-homocysteine hydrolase AFER_RS09120 PF01380 SIS domain AFER_RS09120 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain AFER_RS09130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFER_RS09130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFER_RS09130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFER_RS09130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFER_RS09140 PF02770 Acyl-CoA dehydrogenase, middle domain AFER_RS09140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFER_RS09140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFER_RS09160 PF01527 Transposase AFER_RS09165 PF13276 HTH-like domain AFER_RS09165 PF00665 Integrase core domain AFER_RS09165 PF13333 Integrase core domain AFER_RS09175 PF03328 HpcH/HpaI aldolase/citrate lyase family AFER_RS09180 PF16657 Maltogenic Amylase, C-terminal domain AFER_RS09180 PF00128 Alpha amylase, catalytic domain AFER_RS09185 PF00378 Enoyl-CoA hydratase/isomerase AFER_RS09195 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFER_RS09210 PF01738 Dienelactone hydrolase family AFER_RS09225 PF00206 Lyase AFER_RS09225 PF10415 Fumarase C C-terminus AFER_RS09230 PF00698 Acyl transferase domain AFER_RS09230 PF00109 Beta-ketoacyl synthase, N-terminal domain AFER_RS09230 PF16197 Ketoacyl-synthetase C-terminal extension AFER_RS09230 PF02801 Beta-ketoacyl synthase, C-terminal domain AFER_RS09230 PF14765 Polyketide synthase dehydratase AFER_RS09230 PF08659 KR domain AFER_RS09230 PF08240 Alcohol dehydrogenase GroES-like domain AFER_RS09230 PF00550 Phosphopantetheine attachment site AFER_RS09230 PF00107 Zinc-binding dehydrogenase AFER_RS09245 PF12146 Serine aminopeptidase, S33 AFER_RS09250 PF02310 B12 binding domain AFER_RS09250 PF01642 Methylmalonyl-CoA mutase AFER_RS09255 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFER_RS09265 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFER_RS09270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFER_RS09270 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFER_RS09275 PF00231 ATP synthase AFER_RS09280 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFER_RS09280 PF00306 ATP synthase alpha/beta chain, C terminal domain AFER_RS09280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFER_RS09285 PF00213 ATP synthase delta (OSCP) subunit AFER_RS09290 PF00430 ATP synthase B/B' CF(0) AFER_RS09295 PF00137 ATP synthase subunit C AFER_RS09300 PF00119 ATP synthase A chain AFER_RS09315 PF00953 Glycosyl transferase family 4 AFER_RS09320 PF00464 Serine hydroxymethyltransferase AFER_RS09330 PF05175 Methyltransferase small domain AFER_RS09330 PF17827 PrmC N-terminal domain AFER_RS09335 PF00472 RF-1 domain AFER_RS09335 PF03462 PCRF domain AFER_RS09345 PF01197 Ribosomal protein L31 AFER_RS09350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFER_RS09350 PF07497 Rho termination factor, RNA-binding domain AFER_RS09350 PF07498 Rho termination factor, N-terminal domain AFER_RS09355 PF00291 Pyridoxal-phosphate dependent enzyme AFER_RS09360 PF00742 Homoserine dehydrogenase AFER_RS09360 PF03447 Homoserine dehydrogenase, NAD binding domain AFER_RS09360 PF01842 ACT domain AFER_RS09365 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFER_RS09365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFER_RS09370 PF00750 tRNA synthetases class I (R) AFER_RS09370 PF03485 Arginyl tRNA synthetase N terminal domain AFER_RS09370 PF05746 DALR anticodon binding domain AFER_RS09380 PF02875 Mur ligase family, glutamate ligase domain AFER_RS09380 PF08245 Mur ligase middle domain AFER_RS09380 PF01225 Mur ligase family, catalytic domain AFER_RS09385 PF00535 Glycosyl transferase family 2 AFER_RS09390 PF09335 SNARE associated Golgi protein AFER_RS09395 PF02416 mttA/Hcf106 family AFER_RS09400 PF00107 Zinc-binding dehydrogenase AFER_RS09400 PF08240 Alcohol dehydrogenase GroES-like domain AFER_RS09415 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFER_RS09420 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFER_RS09425 PF13631 Cytochrome b(N-terminal)/b6/petB AFER_RS09430 PF00355 Rieske [2Fe-2S] domain AFER_RS09440 PF00510 Cytochrome c oxidase subunit III AFER_RS09450 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFER_RS09455 PF01593 Flavin containing amine oxidoreductase AFER_RS09460 PF02277 Phosphoribosyltransferase AFER_RS09475 PF00285 Citrate synthase, C-terminal domain AFER_RS09490 PF00293 NUDIX domain AFER_RS09520 PF06778 Chlorite dismutase AFER_RS09525 PF01434 Peptidase family M41 AFER_RS09525 PF00004 ATPase family associated with various cellular activities (AAA) AFER_RS09525 PF17862 AAA+ lid domain AFER_RS09535 PF00118 TCP-1/cpn60 chaperonin family AFER_RS09540 PF02597 ThiS family AFER_RS09545 PF00291 Pyridoxal-phosphate dependent enzyme AFER_RS09550 PF00982 Glycosyltransferase family 20 AFER_RS09570 PF04055 Radical SAM superfamily AFER_RS09570 PF06463 Molybdenum Cofactor Synthesis C AFER_RS09575 PF01967 MoaC family AFER_RS09590 PF01022 Bacterial regulatory protein, arsR family AFER_RS09595 PF02040 Arsenical pump membrane protein AFER_RS09600 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS09600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFER_RS09605 PF01964 Radical SAM ThiC family AFER_RS09605 PF13667 ThiC-associated domain AFER_RS09630 PF01527 Transposase AFER_RS09635 PF01695 IstB-like ATP binding protein AFER_RS09640 PF00665 Integrase core domain AFER_RS09645 PF04555 Restriction endonuclease XhoI AFER_RS09665 PF00436 Single-strand binding protein family AFER_RS09675 PF03699 Uncharacterised protein family (UPF0182) AFER_RS09685 PF05362 Lon protease (S16) C-terminal proteolytic domain AFER_RS09685 PF00004 ATPase family associated with various cellular activities (AAA) AFER_RS09685 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFER_RS09690 PF00596 Class II Aldolase and Adducin N-terminal domain AFER_RS09700 PF01047 MarR family AFER_RS09710 PF01061 ABC-2 type transporter AFER_RS09715 PF00005 ABC transporter AFER_RS09715 PF13732 Domain of unknown function (DUF4162) AFER_RS09720 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFER_RS09720 PF00056 lactate/malate dehydrogenase, NAD binding domain AFER_RS09725 PF00180 Isocitrate/isopropylmalate dehydrogenase AFER_RS09740 PF02391 MoaE protein AFER_RS09770 PF13333 Integrase core domain AFER_RS09770 PF00665 Integrase core domain AFER_RS09770 PF13276 HTH-like domain AFER_RS09780 PF01527 Transposase AFER_RS09785 PF00872 Transposase, Mutator family AFER_RS09805 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFER_RS09815 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFER_RS09815 PF00588 SpoU rRNA Methylase family AFER_RS09820 PF02542 YgbB family AFER_RS09820 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFER_RS09825 PF02559 CarD-like/TRCF domain AFER_RS09830 PF12826 Helix-hairpin-helix motif AFER_RS09830 PF10635 DisA bacterial checkpoint controller linker region AFER_RS09830 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFER_RS09835 PF00004 ATPase family associated with various cellular activities (AAA) AFER_RS09835 PF02861 Clp amino terminal domain, pathogenicity island component AFER_RS09835 PF10431 C-terminal, D2-small domain, of ClpB protein AFER_RS09835 PF07724 AAA domain (Cdc48 subfamily) AFER_RS09835 PF17871 AAA lid domain AFER_RS09850 PF00348 Polyprenyl synthetase AFER_RS09855 PF01336 OB-fold nucleic acid binding domain AFER_RS09855 PF00152 tRNA synthetases class II (D, K and N) AFER_RS09860 PF03309 Type III pantothenate kinase AFER_RS09865 PF02569 Pantoate-beta-alanine ligase AFER_RS09870 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFER_RS09880 PF00809 Pterin binding enzyme AFER_RS09885 PF01227 GTP cyclohydrolase I AFER_RS09890 PF00156 Phosphoribosyl transferase domain AFER_RS09910 PF04542 Sigma-70 region 2 AFER_RS09910 PF08281 Sigma-70, region 4 AFER_RS09925 PF02223 Thymidylate kinase AFER_RS09930 PF13368 Topoisomerase C-terminal repeat AFER_RS09930 PF01751 Toprim domain AFER_RS09930 PF01131 DNA topoisomerase AFER_RS09935 PF13520 Amino acid permease AFER_RS09940 PF02254 TrkA-N domain AFER_RS09940 PF02080 TrkA-C domain AFER_RS09945 PF02254 TrkA-N domain AFER_RS09945 PF02080 TrkA-C domain AFER_RS09970 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFER_RS09990 PF03459 TOBE domain AFER_RS09990 PF00005 ABC transporter AFER_RS10005 PF00155 Aminotransferase class I and II AFER_RS10010 PF03848 Tellurite resistance protein TehB AFER_RS10020 PF13175 AAA ATPase domain AFER_RS10060 PF00156 Phosphoribosyl transferase domain AFER_RS10065 PF00586 AIR synthase related protein, N-terminal domain AFER_RS10065 PF02769 AIR synthase related protein, C-terminal domain AFER_RS10070 PF00156 Phosphoribosyl transferase domain AFER_RS10085 PF03949 Malic enzyme, NAD binding domain AFER_RS10085 PF00390 Malic enzyme, N-terminal domain AFER_RS10110 PF02769 AIR synthase related protein, C-terminal domain AFER_RS10110 PF00586 AIR synthase related protein, N-terminal domain AFER_RS10110 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFER_RS10125 PF01259 SAICAR synthetase AFER_RS10130 PF10397 Adenylosuccinate lyase C-terminus AFER_RS10130 PF00206 Lyase AFER_RS10135 PF02844 Phosphoribosylglycinamide synthetase, N domain AFER_RS10135 PF02843 Phosphoribosylglycinamide synthetase, C domain AFER_RS10135 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFER_RS10140 PF00709 Adenylosuccinate synthetase AFER_RS10145 PF00300 Histidine phosphatase superfamily (branch 1) AFER_RS10150 PF00012 Hsp70 protein AFER_RS10160 PF00226 DnaJ domain AFER_RS10160 PF01556 DnaJ C terminal domain AFER_RS10160 PF00684 DnaJ central domain AFER_RS10165 PF13411 MerR HTH family regulatory protein AFER_RS10170 PF10431 C-terminal, D2-small domain, of ClpB protein AFER_RS10170 PF07724 AAA domain (Cdc48 subfamily) AFER_RS10170 PF00004 ATPase family associated with various cellular activities (AAA) AFER_RS10170 PF17871 AAA lid domain AFER_RS10170 PF02861 Clp amino terminal domain, pathogenicity island component AFER_RS10185 PF00120 Glutamine synthetase, catalytic domain AFER_RS10185 PF03951 Glutamine synthetase, beta-Grasp domain AFER_RS10240 PF02233 NAD(P) transhydrogenase beta subunit AFER_RS10245 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AFER_RS10250 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFER_RS10250 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AFER_RS10250 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFER_RS10255 PF00072 Response regulator receiver domain AFER_RS10255 PF00196 Bacterial regulatory proteins, luxR family AFER_RS10265 PF00202 Aminotransferase class-III AFER_RS10270 PF18324 Hypothetical protein TT1725 AFER_RS10270 PF00180 Isocitrate/isopropylmalate dehydrogenase AFER_RS10285 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFER_RS10285 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS10290 PF01645 Conserved region in glutamate synthase AFER_RS10290 PF01493 GXGXG motif AFER_RS10290 PF04898 Glutamate synthase central domain AFER_RS10290 PF00310 Glutamine amidotransferases class-II AFER_RS10300 PF02674 Colicin V production protein AFER_RS10305 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFER_RS10305 PF00753 Metallo-beta-lactamase superfamily AFER_RS10310 PF07687 Peptidase dimerisation domain AFER_RS10310 PF01546 Peptidase family M20/M25/M40 AFER_RS10315 PF02646 RmuC family AFER_RS10320 PF00581 Rhodanese-like domain AFER_RS10325 PF00909 Ammonium Transporter Family AFER_RS10370 PF02913 FAD linked oxidases, C-terminal domain AFER_RS10370 PF01565 FAD binding domain AFER_RS10400 PF13411 MerR HTH family regulatory protein AFER_RS10405 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFER_RS10405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFER_RS10425 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AFER_RS10430 PF13683 Integrase core domain AFER_RS10430 PF13276 HTH-like domain AFER_RS10435 PF01527 Transposase AFER_RS10440 PF01850 PIN domain AFER_RS10445 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFER_RS10455 PF14437 MafB19-like deaminase AFER_RS10475 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AFER_RS10475 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFER_RS10485 PF02515 CoA-transferase family III AFER_RS10490 PF01614 Bacterial transcriptional regulator AFER_RS10490 PF09339 IclR helix-turn-helix domain AFER_RS10495 PF01979 Amidohydrolase family AFER_RS10505 PF07690 Major Facilitator Superfamily AFER_RS10515 PF00005 ABC transporter AFER_RS10515 PF00664 ABC transporter transmembrane region AFER_RS10520 PF02195 ParB-like nuclease domain AFER_RS10520 PF17762 HTH domain found in ParB protein AFER_RS10525 PF13614 AAA domain AFER_RS10555 PF02096 60Kd inner membrane protein AFER_RS10555 PF14849 YidC periplasmic domain AFER_RS10560 PF00825 Ribonuclease P AFER_RS10565 PF00468 Ribosomal protein L34 AFER_RS10605 PF01471 Putative peptidoglycan binding domain AFER_RS10605 PF01520 N-acetylmuramoyl-L-alanine amidase AFER_RS10630 PF00872 Transposase, Mutator family AFER_RS10650 PF12169 DNA polymerase III subunits gamma and tau domain III AFER_RS10665 PF03963 Flagellar hook capping protein - N-terminal region AFER_RS10690 PF06737 Transglycosylase-like domain AFER_RS10690 PF11574 Protein of unknown function (DUF3235) AFER_RS10695 PF00460 Flagella basal body rod protein AFER_RS10695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFER_RS10715 PF05088 Bacterial NAD-glutamate dehydrogenase AFER_RS10730 PF00877 NlpC/P60 family AFER_RS10735 PF00440 Bacterial regulatory proteins, tetR family AFER_RS10740 PF03918 Cytochrome C biogenesis protein AFER_RS10750 PF01416 tRNA pseudouridine synthase AFER_RS10760 PF00293 NUDIX domain AFER_RS10770 PF00398 Ribosomal RNA adenine dimethylase AFER_RS10775 PF02586 SOS response associated peptidase (SRAP) AFER_RS10795 PF01458 Uncharacterized protein family (UPF0051) AFER_RS10810 PF02585 GlcNAc-PI de-N-acetylase AFER_RS10820 PF00561 alpha/beta hydrolase fold AFER_RS10830 PF00459 Inositol monophosphatase family AFER_RS10835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFER_RS10835 PF13378 Enolase C-terminal domain-like AFER_RS10865 PF17200 Single Cache domain 2 AFER_RS10865 PF00672 HAMP domain AFER_RS10865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFER_RS10870 PF02583 Metal-sensitive transcriptional repressor AFER_RS10890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFER_RS10895 PF04101 Glycosyltransferase family 28 C-terminal domain AFER_RS10895 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AFER_RS10900 PF01323 DSBA-like thioredoxin domain AFER_RS10905 PF00425 chorismate binding enzyme AFER_RS10915 PF00535 Glycosyl transferase family 2 AFER_RS10925 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFER_RS10940 PF08331 Domain of unknown function (DUF1730) AFER_RS11030 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS11050 PF04472 Cell division protein SepF AFER_RS11055 PF02578 Multi-copper polyphenol oxidoreductase laccase AFER_RS11060 PF03033 Glycosyltransferase family 28 N-terminal domain AFER_RS11060 PF04101 Glycosyltransferase family 28 C-terminal domain AFER_RS11065 PF01098 Cell cycle protein AFER_RS11095 PF00672 HAMP domain AFER_RS11095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFER_RS11095 PF02743 Cache domain AFER_RS11100 PF01553 Acyltransferase AFER_RS11105 PF01565 FAD binding domain AFER_RS11110 PF03707 Bacterial signalling protein N terminal repeat AFER_RS11110 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS11110 PF00563 EAL domain AFER_RS11135 PF00665 Integrase core domain AFER_RS11135 PF13936 Helix-turn-helix domain AFER_RS11145 PF04940 Sensors of blue-light using FAD AFER_RS11145 PF00563 EAL domain AFER_RS11150 PF12792 CSS motif domain associated with EAL AFER_RS11150 PF00563 EAL domain AFER_RS11160 PF01475 Ferric uptake regulator family AFER_RS11165 PF00398 Ribosomal RNA adenine dimethylase AFER_RS11175 PF00929 Exonuclease AFER_RS11175 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFER_RS11175 PF11490 DNA polymerase III polC-type N-terminus II AFER_RS11175 PF02811 PHP domain AFER_RS11175 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFER_RS11175 PF14480 DNA polymerase III polC-type N-terminus I AFER_RS11175 PF14579 Helix-hairpin-helix motif AFER_RS11180 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS11180 PF08448 PAS fold AFER_RS11180 PF00563 EAL domain AFER_RS11195 PF06470 SMC proteins Flexible Hinge Domain AFER_RS11195 PF02463 RecF/RecN/SMC N terminal domain AFER_RS11215 PF00005 ABC transporter AFER_RS11240 PF13276 HTH-like domain AFER_RS11240 PF00665 Integrase core domain AFER_RS11240 PF13333 Integrase core domain AFER_RS11245 PF12697 Alpha/beta hydrolase family AFER_RS11265 PF00872 Transposase, Mutator family AFER_RS11275 PF00578 AhpC/TSA family AFER_RS11280 PF13350 Tyrosine phosphatase family AFER_RS11285 PF01106 NifU-like domain AFER_RS11285 PF01521 Iron-sulphur cluster biosynthesis AFER_RS11290 PF00563 EAL domain AFER_RS11290 PF13426 PAS domain AFER_RS11290 PF00990 Diguanylate cyclase, GGDEF domain AFER_RS11295 PF08386 TAP-like protein AFER_RS11295 PF00561 alpha/beta hydrolase fold AFER_RS11330 PF09179 TilS substrate binding domain AFER_RS11330 PF01171 PP-loop family AFER_RS11340 PF09190 DALR domain AFER_RS11340 PF01406 tRNA synthetases class I (C) catalytic domain AFER_RS11345 PF01025 GrpE AFER_RS11350 PF00535 Glycosyl transferase family 2 AFER_RS11355 PF00535 Glycosyl transferase family 2 AFER_RS11355 PF00534 Glycosyl transferases group 1 AFER_RS11365 PF00672 HAMP domain AFER_RS11365 PF02743 Cache domain AFER_RS11365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFER_RS11370 PF02839 Carbohydrate binding domain AFER_RS11375 PF02527 rRNA small subunit methyltransferase G AFER_RS11380 PF14804 Jag N-terminus AFER_RS11380 PF01424 R3H domain