locus-tag class description ACIFE_RS00015 PF00308 Bacterial dnaA protein ACIFE_RS00015 PF08299 Bacterial dnaA protein helix-turn-helix ACIFE_RS00015 PF11638 DnaA N-terminal domain ACIFE_RS00020 PF00712 DNA polymerase III beta subunit, N-terminal domain ACIFE_RS00020 PF02768 DNA polymerase III beta subunit, C-terminal domain ACIFE_RS00020 PF02767 DNA polymerase III beta subunit, central domain ACIFE_RS00025 PF02463 RecF/RecN/SMC N terminal domain ACIFE_RS00030 PF00204 DNA gyrase B ACIFE_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus ACIFE_RS00030 PF18053 DNA gyrase B subunit insert domain ACIFE_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS00030 PF01751 Toprim domain ACIFE_RS00040 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS00045 PF03776 Septum formation topological specificity factor MinE ACIFE_RS00050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ACIFE_RS00055 PF03775 Septum formation inhibitor MinC, C-terminal domain ACIFE_RS00055 PF05209 Septum formation inhibitor MinC, N-terminal domain ACIFE_RS00060 PF11953 Domain of unknown function (DUF3470) ACIFE_RS00060 PF00037 4Fe-4S binding domain ACIFE_RS00065 PF13368 Topoisomerase C-terminal repeat ACIFE_RS00065 PF01751 Toprim domain ACIFE_RS00065 PF01131 DNA topoisomerase ACIFE_RS00070 PF04361 Protein of unknown function (DUF494) ACIFE_RS00075 PF17782 DprA winged helix domain ACIFE_RS00075 PF02481 DNA recombination-mediator protein A ACIFE_RS00080 PF01476 LysM domain ACIFE_RS00080 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ACIFE_RS00085 PF01327 Polypeptide deformylase ACIFE_RS00090 PF02911 Formyl transferase, C-terminal domain ACIFE_RS00090 PF00551 Formyl transferase ACIFE_RS00095 PF01029 NusB family ACIFE_RS00095 PF01189 16S rRNA methyltransferase RsmB/F ACIFE_RS00105 PF00672 HAMP domain ACIFE_RS00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS00105 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS00105 PF00989 PAS fold ACIFE_RS00110 PF00158 Sigma-54 interaction domain ACIFE_RS00110 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS00110 PF00072 Response regulator receiver domain ACIFE_RS00120 PF00672 HAMP domain ACIFE_RS00120 PF02743 Cache domain ACIFE_RS00120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ACIFE_RS00125 PF10091 Putative glucoamylase ACIFE_RS00125 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain ACIFE_RS00125 PF06165 Glycosyltransferase family 36 ACIFE_RS00135 PF00563 EAL domain ACIFE_RS00135 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS00135 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS00140 PF03960 ArsC family ACIFE_RS00155 PF01106 NifU-like domain ACIFE_RS00155 PF04324 BFD-like [2Fe-2S] binding domain ACIFE_RS00155 PF01592 NifU-like N terminal domain ACIFE_RS00160 PF00919 Uncharacterized protein family UPF0004 ACIFE_RS00160 PF04055 Radical SAM superfamily ACIFE_RS00160 PF18693 TRAM domain ACIFE_RS00165 PF02152 Dihydroneopterin aldolase ACIFE_RS00170 PF02660 Glycerol-3-phosphate acyltransferase ACIFE_RS00175 PF00814 Glycoprotease family ACIFE_RS00180 PF04305 Protein of unknown function (DUF455) ACIFE_RS00185 PF13570 PQQ-like domain ACIFE_RS00185 PF13360 PQQ-like domain ACIFE_RS00185 PF01011 PQQ enzyme repeat ACIFE_RS00190 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ACIFE_RS00195 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system ACIFE_RS00245 PF00293 NUDIX domain ACIFE_RS00245 PF09297 NADH pyrophosphatase zinc ribbon domain ACIFE_RS00250 PF00873 AcrB/AcrD/AcrF family ACIFE_RS00270 PF00486 Transcriptional regulatory protein, C terminal ACIFE_RS00270 PF00072 Response regulator receiver domain ACIFE_RS00275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS00275 PF00672 HAMP domain ACIFE_RS00275 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS00280 PF01566 Natural resistance-associated macrophage protein ACIFE_RS00285 PF04012 PspA/IM30 family ACIFE_RS00290 PF01906 Putative heavy-metal-binding ACIFE_RS00310 PF00528 Binding-protein-dependent transport system inner membrane component ACIFE_RS00315 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ACIFE_RS00320 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS00325 PF11953 Domain of unknown function (DUF3470) ACIFE_RS00325 PF00037 4Fe-4S binding domain ACIFE_RS00335 PF00890 FAD binding domain ACIFE_RS00335 PF02910 Fumarate reductase flavoprotein C-term ACIFE_RS00340 PF00392 Bacterial regulatory proteins, gntR family ACIFE_RS00340 PF07702 UTRA domain ACIFE_RS00350 PF06969 HemN C-terminal domain ACIFE_RS00350 PF04055 Radical SAM superfamily ACIFE_RS00355 PF03466 LysR substrate binding domain ACIFE_RS00355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS00365 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACIFE_RS00375 PF02913 FAD linked oxidases, C-terminal domain ACIFE_RS00375 PF01565 FAD binding domain ACIFE_RS00380 PF13580 SIS domain ACIFE_RS00385 PF02021 Uncharacterised protein family UPF0102 ACIFE_RS00390 PF04348 LppC putative lipoprotein ACIFE_RS00395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIFE_RS00405 PF00034 Cytochrome c ACIFE_RS00405 PF03150 Di-haem cytochrome c peroxidase ACIFE_RS00410 PF05140 ResB-like family ACIFE_RS00415 PF01578 Cytochrome C assembly protein ACIFE_RS00420 PF00313 'Cold-shock' DNA-binding domain ACIFE_RS00435 PF10150 Ribonuclease E/G family ACIFE_RS00435 PF00575 S1 RNA binding domain ACIFE_RS00440 PF02545 Maf-like protein ACIFE_RS00455 PF02590 Predicted SPOUT methyltransferase ACIFE_RS00465 PF01467 Cytidylyltransferase-like ACIFE_RS00475 PF01625 Peptide methionine sulfoxide reductase ACIFE_RS00480 PF01641 SelR domain ACIFE_RS00490 PF04349 Periplasmic glucan biosynthesis protein, MdoG ACIFE_RS00505 PF01618 MotA/TolQ/ExbB proton channel family ACIFE_RS00510 PF02472 Biopolymer transport protein ExbD/TolR ACIFE_RS00530 PF00690 Cation transporter/ATPase, N-terminus ACIFE_RS00530 PF00689 Cation transporting ATPase, C-terminus ACIFE_RS00535 PF13538 UvrD-like helicase C-terminal domain ACIFE_RS00540 PF00580 UvrD/REP helicase N-terminal domain ACIFE_RS00540 PF13361 UvrD-like helicase C-terminal domain ACIFE_RS00540 PF12705 PD-(D/E)XK nuclease superfamily ACIFE_RS00545 PF17946 RecC C-terminal domain ACIFE_RS00555 PF05114 Protein of unknown function (DUF692) ACIFE_RS00565 PF03279 Bacterial lipid A biosynthesis acyltransferase ACIFE_RS00590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACIFE_RS00625 PF14667 Polysaccharide biosynthesis C-terminal domain ACIFE_RS00625 PF01943 Polysaccharide biosynthesis protein ACIFE_RS00635 PF00691 OmpA family ACIFE_RS00645 PF04055 Radical SAM superfamily ACIFE_RS00650 PF06508 Queuosine biosynthesis protein QueC ACIFE_RS00655 PF04052 TolB amino-terminal domain ACIFE_RS00655 PF07676 WD40-like Beta Propeller Repeat ACIFE_RS00665 PF02472 Biopolymer transport protein ExbD/TolR ACIFE_RS00670 PF01618 MotA/TolQ/ExbB proton channel family ACIFE_RS00675 PF03061 Thioesterase superfamily ACIFE_RS00680 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACIFE_RS00680 PF17864 RuvB AAA lid domain ACIFE_RS00680 PF05491 RuvB C-terminal winged helix domain ACIFE_RS00685 PF07499 RuvA, C-terminal domain ACIFE_RS00685 PF01330 RuvA N terminal domain ACIFE_RS00690 PF02075 Crossover junction endodeoxyribonuclease RuvC ACIFE_RS00695 PF01709 Transcriptional regulator ACIFE_RS00705 PF02445 Quinolinate synthetase A protein ACIFE_RS00710 PF00152 tRNA synthetases class II (D, K and N) ACIFE_RS00710 PF02938 GAD domain ACIFE_RS00710 PF01336 OB-fold nucleic acid binding domain ACIFE_RS00720 PF01914 MarC family integral membrane protein ACIFE_RS00730 PF12848 ABC transporter ACIFE_RS00730 PF00005 ABC transporter ACIFE_RS00735 PF00468 Ribosomal protein L34 ACIFE_RS00740 PF00825 Ribonuclease P ACIFE_RS00745 PF01809 Putative membrane protein insertion efficiency factor ACIFE_RS00750 PF02096 60Kd inner membrane protein ACIFE_RS00750 PF14849 YidC periplasmic domain ACIFE_RS00755 PF10396 GTP-binding protein TrmE N-terminus ACIFE_RS00755 PF01926 50S ribosome-binding GTPase ACIFE_RS00755 PF12631 MnmE helical domain ACIFE_RS00780 PF11867 Domain of unknown function (DUF3387) ACIFE_RS00780 PF18766 SWI2/SNF2 ATPase ACIFE_RS00780 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACIFE_RS00800 PF02384 N-6 DNA Methylase ACIFE_RS00800 PF12161 HsdM N-terminal domain ACIFE_RS00815 PF01061 ABC-2 type transporter ACIFE_RS00820 PF00005 ABC transporter ACIFE_RS00825 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ACIFE_RS00835 PF03232 Ubiquinone biosynthesis protein COQ7 ACIFE_RS00840 PF02082 Transcriptional regulator ACIFE_RS00850 PF00218 Indole-3-glycerol phosphate synthase ACIFE_RS00855 PF02885 Glycosyl transferase family, helical bundle domain ACIFE_RS00855 PF00591 Glycosyl transferase family, a/b domain ACIFE_RS00860 PF00117 Glutamine amidotransferase class-I ACIFE_RS00880 PF00425 chorismate binding enzyme ACIFE_RS00880 PF04715 Anthranilate synthase component I, N terminal region ACIFE_RS00885 PF13419 Haloacid dehalogenase-like hydrolase ACIFE_RS00890 PF00834 Ribulose-phosphate 3 epimerase family ACIFE_RS00895 PF01116 Fructose-bisphosphate aldolase class-II ACIFE_RS00900 PF02887 Pyruvate kinase, alpha/beta domain ACIFE_RS00900 PF00224 Pyruvate kinase, barrel domain ACIFE_RS00905 PF00162 Phosphoglycerate kinase ACIFE_RS00910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACIFE_RS00910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIFE_RS00915 PF02779 Transketolase, pyrimidine binding domain ACIFE_RS00915 PF00456 Transketolase, thiamine diphosphate binding domain ACIFE_RS00915 PF02780 Transketolase, C-terminal domain ACIFE_RS00920 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ACIFE_RS00925 PF00459 Inositol monophosphatase family ACIFE_RS00935 PF04452 RNA methyltransferase ACIFE_RS00940 PF01544 CorA-like Mg2+ transporter protein ACIFE_RS00945 PF02401 LytB protein ACIFE_RS00950 PF02646 RmuC family ACIFE_RS00955 PF01741 Large-conductance mechanosensitive channel, MscL ACIFE_RS00965 PF00873 AcrB/AcrD/AcrF family ACIFE_RS00970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS00985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACIFE_RS01000 PF00583 Acetyltransferase (GNAT) family ACIFE_RS01010 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ACIFE_RS01045 PF00892 EamA-like transporter family ACIFE_RS01055 PF00072 Response regulator receiver domain ACIFE_RS01055 PF00486 Transcriptional regulatory protein, C terminal ACIFE_RS01060 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS01060 PF00672 HAMP domain ACIFE_RS01060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS01070 PF14698 Argininosuccinate lyase C-terminal ACIFE_RS01070 PF00206 Lyase ACIFE_RS01080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACIFE_RS01080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACIFE_RS01085 PF00342 Phosphoglucose isomerase ACIFE_RS01090 PF07943 Penicillin-binding protein 5, C-terminal domain ACIFE_RS01090 PF00768 D-alanyl-D-alanine carboxypeptidase ACIFE_RS01095 PF00043 Glutathione S-transferase, C-terminal domain ACIFE_RS01095 PF02798 Glutathione S-transferase, N-terminal domain ACIFE_RS01100 PF03358 NADPH-dependent FMN reductase ACIFE_RS01105 PF01638 HxlR-like helix-turn-helix ACIFE_RS01110 PF04264 YceI-like domain ACIFE_RS01120 PF00403 Heavy-metal-associated domain ACIFE_RS01130 PF00403 Heavy-metal-associated domain ACIFE_RS01135 PF02254 TrkA-N domain ACIFE_RS01135 PF07885 Ion channel ACIFE_RS01145 PF03330 Lytic transglycolase ACIFE_RS01145 PF05036 Sporulation related domain ACIFE_RS01160 PF00117 Glutamine amidotransferase class-I ACIFE_RS01160 PF00958 GMP synthase C terminal domain ACIFE_RS01165 PF00563 EAL domain ACIFE_RS01165 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS01165 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS01170 PF00909 Ammonium Transporter Family ACIFE_RS01185 PF00909 Ammonium Transporter Family ACIFE_RS01190 PF00543 Nitrogen regulatory protein P-II ACIFE_RS01200 PF04293 SpoVR like protein ACIFE_RS01205 PF04285 Protein of unknown function (DUF444) ACIFE_RS01210 PF00909 Ammonium Transporter Family ACIFE_RS01215 PF08298 PrkA AAA domain ACIFE_RS01215 PF06798 PrkA serine protein kinase C-terminal domain ACIFE_RS01230 PF14403 Circularly permuted ATP-grasp type 2 ACIFE_RS01230 PF04168 A predicted alpha-helical domain with a conserved ER motif. ACIFE_RS01235 PF14403 Circularly permuted ATP-grasp type 2 ACIFE_RS01245 PF00989 PAS fold ACIFE_RS01245 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS01250 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS01250 PF00158 Sigma-54 interaction domain ACIFE_RS01250 PF00072 Response regulator receiver domain ACIFE_RS01260 PF00348 Polyprenyl synthetase ACIFE_RS01280 PF03717 Penicillin-binding Protein dimerisation domain ACIFE_RS01280 PF00905 Penicillin binding protein transpeptidase domain ACIFE_RS01295 PF00005 ABC transporter ACIFE_RS01295 PF16326 ABC transporter C-terminal domain ACIFE_RS01295 PF12848 ABC transporter ACIFE_RS01305 PF03167 Uracil DNA glycosylase superfamily ACIFE_RS01325 PF00437 Type II/IV secretion system protein ACIFE_RS01330 PF00263 Bacterial type II and III secretion system protein ACIFE_RS01330 PF03958 Bacterial type II/III secretion system short domain ACIFE_RS01360 PF00691 OmpA family ACIFE_RS01360 PF05736 OprF membrane domain ACIFE_RS01395 PF00448 SRP54-type protein, GTPase domain ACIFE_RS01395 PF02881 SRP54-type protein, helical bundle domain ACIFE_RS01395 PF02978 Signal peptide binding domain ACIFE_RS01400 PF00886 Ribosomal protein S16 ACIFE_RS01405 PF05239 PRC-barrel domain ACIFE_RS01405 PF01782 RimM N-terminal domain ACIFE_RS01410 PF01746 tRNA (Guanine-1)-methyltransferase ACIFE_RS01415 PF01245 Ribosomal protein L19 ACIFE_RS01425 PF02899 Phage integrase, N-terminal SAM-like domain ACIFE_RS01425 PF00589 Phage integrase family ACIFE_RS01430 PF13180 PDZ domain ACIFE_RS01435 PF00085 Thioredoxin ACIFE_RS01445 PF17755 UvrA DNA-binding domain ACIFE_RS01445 PF17760 UvrA interaction domain ACIFE_RS01450 PF00436 Single-strand binding protein family ACIFE_RS01455 PF02384 N-6 DNA Methylase ACIFE_RS01480 PF11867 Domain of unknown function (DUF3387) ACIFE_RS01480 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACIFE_RS01480 PF18766 SWI2/SNF2 ATPase ACIFE_RS01490 PF04286 Protein of unknown function (DUF445) ACIFE_RS01495 PF01177 Asp/Glu/Hydantoin racemase ACIFE_RS01500 PF00480 ROK family ACIFE_RS01505 PF03065 Glycosyl hydrolase family 57 ACIFE_RS01505 PF09095 Domain of unknown function (DUF1926) ACIFE_RS01505 PF09094 Domain of unknown function (DUF1925) ACIFE_RS01515 PF00483 Nucleotidyl transferase ACIFE_RS01520 PF02806 Alpha amylase, C-terminal all-beta domain ACIFE_RS01520 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACIFE_RS01520 PF00128 Alpha amylase, catalytic domain ACIFE_RS01530 PF01145 SPFH domain / Band 7 family ACIFE_RS01535 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ACIFE_RS01540 PF00291 Pyridoxal-phosphate dependent enzyme ACIFE_RS01560 PF01938 TRAM domain ACIFE_RS01560 PF05958 tRNA (Uracil-5-)-methyltransferase ACIFE_RS01570 PF13520 Amino acid permease ACIFE_RS01575 PF00933 Glycosyl hydrolase family 3 N terminal domain ACIFE_RS01580 PF01250 Ribosomal protein S6 ACIFE_RS01585 PF01084 Ribosomal protein S18 ACIFE_RS01595 PF01281 Ribosomal protein L9, N-terminal domain ACIFE_RS01595 PF03948 Ribosomal protein L9, C-terminal domain ACIFE_RS01600 PF00772 DnaB-like helicase N terminal domain ACIFE_RS01600 PF03796 DnaB-like helicase C terminal domain ACIFE_RS01605 PF01168 Alanine racemase, N-terminal domain ACIFE_RS01605 PF00842 Alanine racemase, C-terminal domain ACIFE_RS01610 PF18073 Rubredoxin metal binding domain ACIFE_RS01620 PF00557 Metallopeptidase family M24 ACIFE_RS01620 PF05195 Aminopeptidase P, N-terminal domain ACIFE_RS01635 PF09363 XFP C-terminal domain ACIFE_RS01635 PF09364 XFP N-terminal domain ACIFE_RS01635 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase ACIFE_RS01660 PF02899 Phage integrase, N-terminal SAM-like domain ACIFE_RS01660 PF00589 Phage integrase family ACIFE_RS01695 PF13495 Phage integrase, N-terminal SAM-like domain ACIFE_RS01695 PF00589 Phage integrase family ACIFE_RS01720 PF00106 short chain dehydrogenase ACIFE_RS01730 PF00216 Bacterial DNA-binding protein ACIFE_RS01755 PF00270 DEAD/DEAH box helicase ACIFE_RS01755 PF09369 Domain of unknown function (DUF1998) ACIFE_RS01755 PF00271 Helicase conserved C-terminal domain ACIFE_RS01760 PF00176 SNF2 family N-terminal domain ACIFE_RS01760 PF00271 Helicase conserved C-terminal domain ACIFE_RS01845 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIFE_RS01845 PF12833 Helix-turn-helix domain ACIFE_RS01845 PF06029 AlkA N-terminal domain ACIFE_RS01845 PF02805 Metal binding domain of Ada ACIFE_RS01900 PF00589 Phage integrase family ACIFE_RS01955 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA ACIFE_RS01960 PF15723 Motility quorum-sensing regulator, toxin of MqsA ACIFE_RS01990 PF01695 IstB-like ATP binding protein ACIFE_RS02100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS02100 PF03466 LysR substrate binding domain ACIFE_RS02105 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIFE_RS02105 PF00361 Proton-conducting membrane transporter ACIFE_RS02110 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) ACIFE_RS02125 PF01979 Amidohydrolase family ACIFE_RS02135 PF01047 MarR family ACIFE_RS02145 PF04264 YceI-like domain ACIFE_RS02165 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS02165 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS02165 PF00563 EAL domain ACIFE_RS02185 PF02371 Transposase IS116/IS110/IS902 family ACIFE_RS02185 PF01548 Transposase ACIFE_RS02220 PF00127 Copper binding proteins, plastocyanin/azurin family ACIFE_RS02290 PF02308 MgtC family ACIFE_RS02295 PF00550 Phosphopantetheine attachment site ACIFE_RS02300 PF13411 MerR HTH family regulatory protein ACIFE_RS02305 PF01545 Cation efflux family ACIFE_RS02315 PF00266 Aminotransferase class-V ACIFE_RS02345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS02350 PF00873 AcrB/AcrD/AcrF family ACIFE_RS02435 PF17841 BID domain of Bartonella effector protein (Bep) ACIFE_RS02435 PF03389 MobA/MobL family ACIFE_RS02435 PF01443 Viral (Superfamily 1) RNA helicase ACIFE_RS02445 PF13514 AAA domain ACIFE_RS02450 PF00149 Calcineurin-like phosphoesterase ACIFE_RS02460 PF00271 Helicase conserved C-terminal domain ACIFE_RS02460 PF00176 SNF2 family N-terminal domain ACIFE_RS02470 PF01555 DNA methylase ACIFE_RS02470 PF18273 Type III R-M EcoP15I C-terminal domain ACIFE_RS02480 PF08774 VRR-NUC domain ACIFE_RS02480 PF04851 Type III restriction enzyme, res subunit ACIFE_RS02490 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS02575 PF14572 Phosphoribosyl synthetase-associated domain ACIFE_RS02575 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACIFE_RS02585 PF08544 GHMP kinases C terminal ACIFE_RS02585 PF00288 GHMP kinases N terminal domain ACIFE_RS02590 PF03550 Outer membrane lipoprotein LolB ACIFE_RS02600 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACIFE_RS02600 PF01488 Shikimate / quinate 5-dehydrogenase ACIFE_RS02600 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACIFE_RS02605 PF03462 PCRF domain ACIFE_RS02605 PF00472 RF-1 domain ACIFE_RS02610 PF05175 Methyltransferase small domain ACIFE_RS02610 PF17827 PrmC N-terminal domain ACIFE_RS02615 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACIFE_RS02615 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACIFE_RS02615 PF06827 Zinc finger found in FPG and IleRS ACIFE_RS02620 PF00350 Dynamin family ACIFE_RS02625 PF00037 4Fe-4S binding domain ACIFE_RS02630 PF01467 Cytidylyltransferase-like ACIFE_RS02640 PF00448 SRP54-type protein, GTPase domain ACIFE_RS02640 PF02881 SRP54-type protein, helical bundle domain ACIFE_RS02645 PF00005 ABC transporter ACIFE_RS02650 PF18075 FtsX extracellular domain ACIFE_RS02655 PF04545 Sigma-70, region 4 ACIFE_RS02655 PF04542 Sigma-70 region 2 ACIFE_RS02655 PF00140 Sigma-70 factor, region 1.2 ACIFE_RS02665 PF07724 AAA domain (Cdc48 subfamily) ACIFE_RS02665 PF00004 ATPase family associated with various cellular activities (AAA) ACIFE_RS02670 PF00227 Proteasome subunit ACIFE_RS02675 PF02899 Phage integrase, N-terminal SAM-like domain ACIFE_RS02675 PF00589 Phage integrase family ACIFE_RS02685 PF01678 Diaminopimelate epimerase ACIFE_RS02700 PF03144 Elongation factor Tu domain 2 ACIFE_RS02700 PF00679 Elongation factor G C-terminus ACIFE_RS02700 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS02705 PF01209 ubiE/COQ5 methyltransferase family ACIFE_RS02710 PF04379 ApaG domain ACIFE_RS02715 PF01985 CRS1 / YhbY (CRM) domain ACIFE_RS02720 PF01728 FtsJ-like methyltransferase ACIFE_RS02735 PF03063 Prismane/CO dehydrogenase family ACIFE_RS02740 PF00970 Oxidoreductase FAD-binding domain ACIFE_RS02740 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIFE_RS02740 PF00175 Oxidoreductase NAD-binding domain ACIFE_RS02750 PF00633 Helix-hairpin-helix motif ACIFE_RS02750 PF10576 Iron-sulfur binding domain of endonuclease III ACIFE_RS02750 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIFE_RS02760 PF10996 Beta-Casp domain ACIFE_RS02760 PF00753 Metallo-beta-lactamase superfamily ACIFE_RS02760 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ACIFE_RS02765 PF08323 Starch synthase catalytic domain ACIFE_RS02765 PF00534 Glycosyl transferases group 1 ACIFE_RS02785 PF01432 Peptidase family M3 ACIFE_RS02785 PF08439 Oligopeptidase F ACIFE_RS02790 PF00206 Lyase ACIFE_RS02790 PF10415 Fumarase C C-terminus ACIFE_RS02795 PF18152 DAHP synthase ferredoxin-like domain ACIFE_RS02795 PF00793 DAHP synthetase I family ACIFE_RS02800 PF09334 tRNA synthetases class I (M) ACIFE_RS02800 PF01588 Putative tRNA binding domain ACIFE_RS02805 PF00830 Ribosomal L28 family ACIFE_RS02810 PF00471 Ribosomal protein L33 ACIFE_RS02815 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ACIFE_RS02815 PF01628 HrcA protein C terminal domain ACIFE_RS02820 PF01025 GrpE ACIFE_RS02825 PF00012 Hsp70 protein ACIFE_RS02830 PF01556 DnaJ C terminal domain ACIFE_RS02830 PF00226 DnaJ domain ACIFE_RS02830 PF00684 DnaJ central domain ACIFE_RS02835 PF01113 Dihydrodipicolinate reductase, N-terminus ACIFE_RS02835 PF05173 Dihydrodipicolinate reductase, C-terminus ACIFE_RS02845 PF10609 NUBPL iron-transfer P-loop NTPase ACIFE_RS02850 PF00692 dUTPase ACIFE_RS02855 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS02855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIFE_RS02870 PF00230 Major intrinsic protein ACIFE_RS02890 PF00128 Alpha amylase, catalytic domain ACIFE_RS02890 PF16657 Maltogenic Amylase, C-terminal domain ACIFE_RS02895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACIFE_RS02895 PF00128 Alpha amylase, catalytic domain ACIFE_RS02900 PF11941 Domain of unknown function (DUF3459) ACIFE_RS02900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACIFE_RS02900 PF00128 Alpha amylase, catalytic domain ACIFE_RS02905 PF02446 4-alpha-glucanotransferase ACIFE_RS02925 PF00032 Cytochrome b(C-terminal)/b6/petD ACIFE_RS02925 PF00033 Cytochrome b/b6/petB ACIFE_RS02930 PF00106 short chain dehydrogenase ACIFE_RS02935 PF00034 Cytochrome c ACIFE_RS02950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS02950 PF03466 LysR substrate binding domain ACIFE_RS02955 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACIFE_RS02965 PF01476 LysM domain ACIFE_RS02965 PF01464 Transglycosylase SLT domain ACIFE_RS02970 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIFE_RS02975 PF00330 Aconitase family (aconitate hydratase) ACIFE_RS02980 PF00180 Isocitrate/isopropylmalate dehydrogenase ACIFE_RS02985 PF08442 ATP-grasp domain ACIFE_RS02985 PF00549 CoA-ligase ACIFE_RS02995 PF00549 CoA-ligase ACIFE_RS02995 PF02629 CoA binding domain ACIFE_RS03000 PF02540 NAD synthase ACIFE_RS03000 PF00795 Carbon-nitrogen hydrolase ACIFE_RS03005 PF00543 Nitrogen regulatory protein P-II ACIFE_RS03010 PF13525 Outer membrane lipoprotein ACIFE_RS03015 PF01479 S4 domain ACIFE_RS03015 PF00849 RNA pseudouridylate synthase ACIFE_RS03020 PF02578 Multi-copper polyphenol oxidoreductase laccase ACIFE_RS03025 PF03079 ARD/ARD' family ACIFE_RS03030 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ACIFE_RS03030 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ACIFE_RS03040 PF00596 Class II Aldolase and Adducin N-terminal domain ACIFE_RS03050 PF01327 Polypeptide deformylase ACIFE_RS03055 PF01618 MotA/TolQ/ExbB proton channel family ACIFE_RS03060 PF02472 Biopolymer transport protein ExbD/TolR ACIFE_RS03075 PF01979 Amidohydrolase family ACIFE_RS03080 PF00962 Adenosine/AMP deaminase ACIFE_RS03090 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ACIFE_RS03090 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ACIFE_RS03095 PF01799 [2Fe-2S] binding domain ACIFE_RS03095 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIFE_RS03100 PF03450 CO dehydrogenase flavoprotein C-terminal domain ACIFE_RS03100 PF00941 FAD binding domain in molybdopterin dehydrogenase ACIFE_RS03110 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) ACIFE_RS03115 PF02625 XdhC and CoxI family ACIFE_RS03115 PF13478 XdhC Rossmann domain ACIFE_RS03125 PF01425 Amidase ACIFE_RS03135 PF12804 MobA-like NTP transferase domain ACIFE_RS03145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS03145 PF03466 LysR substrate binding domain ACIFE_RS03160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACIFE_RS03190 PF01420 Type I restriction modification DNA specificity domain ACIFE_RS03215 PF11867 Domain of unknown function (DUF3387) ACIFE_RS03215 PF18766 SWI2/SNF2 ATPase ACIFE_RS03215 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACIFE_RS03225 PF11455 Protein of unknown function (DUF3018) ACIFE_RS03240 PF00483 Nucleotidyl transferase ACIFE_RS03250 PF00158 Sigma-54 interaction domain ACIFE_RS03250 PF00072 Response regulator receiver domain ACIFE_RS03260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS03260 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS03265 PF02463 RecF/RecN/SMC N terminal domain ACIFE_RS03270 PF01513 ATP-NAD kinase ACIFE_RS03275 PF03309 Type III pantothenate kinase ACIFE_RS03280 PF03099 Biotin/lipoate A/B protein ligase family ACIFE_RS03280 PF02237 Biotin protein ligase C terminal domain ACIFE_RS03285 PF00171 Aldehyde dehydrogenase family ACIFE_RS03290 PF08721 TnsA endonuclease C terminal ACIFE_RS03290 PF08722 TnsA endonuclease N terminal ACIFE_RS03295 PF00665 Integrase core domain ACIFE_RS03300 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACIFE_RS03300 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACIFE_RS03305 PF00403 Heavy-metal-associated domain ACIFE_RS03315 PF00403 Heavy-metal-associated domain ACIFE_RS03320 PF00462 Glutaredoxin ACIFE_RS03340 PF02796 Helix-turn-helix domain of resolvase ACIFE_RS03340 PF00239 Resolvase, N terminal domain ACIFE_RS03355 PF00756 Putative esterase ACIFE_RS03360 PF00107 Zinc-binding dehydrogenase ACIFE_RS03360 PF08240 Alcohol dehydrogenase GroES-like domain ACIFE_RS03365 PF04828 Glutathione-dependent formaldehyde-activating enzyme ACIFE_RS03370 PF00158 Sigma-54 interaction domain ACIFE_RS03370 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS03370 PF01590 GAF domain ACIFE_RS03395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ACIFE_RS03415 PF02534 Type IV secretory system Conjugative DNA transfer ACIFE_RS03420 PF07804 HipA-like C-terminal domain ACIFE_RS03440 PF11798 IMS family HHH motif ACIFE_RS03440 PF11799 impB/mucB/samB family C-terminal domain ACIFE_RS03440 PF00817 impB/mucB/samB family ACIFE_RS03440 PF13438 Domain of unknown function (DUF4113) ACIFE_RS03445 PF00717 Peptidase S24-like ACIFE_RS03460 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ACIFE_RS03460 PF13538 UvrD-like helicase C-terminal domain ACIFE_RS03460 PF14490 Helix-hairpin-helix containing domain ACIFE_RS03485 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS03485 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS03485 PF00563 EAL domain ACIFE_RS03490 PF00543 Nitrogen regulatory protein P-II ACIFE_RS03535 PF07693 KAP family P-loop domain ACIFE_RS03560 PF00216 Bacterial DNA-binding protein ACIFE_RS03570 PF02796 Helix-turn-helix domain of resolvase ACIFE_RS03570 PF00239 Resolvase, N terminal domain ACIFE_RS03585 PF11412 Disulphide bond corrector protein DsbC ACIFE_RS03585 PF02683 Cytochrome C biogenesis protein transmembrane region ACIFE_RS03595 PF04542 Sigma-70 region 2 ACIFE_RS03595 PF08281 Sigma-70, region 4 ACIFE_RS03630 PF05114 Protein of unknown function (DUF692) ACIFE_RS03690 PF08406 CbbQ/NirQ/NorQ C-terminal ACIFE_RS03690 PF07728 AAA domain (dynein-related subfamily) ACIFE_RS03695 PF08534 Redoxin ACIFE_RS03700 PF00300 Histidine phosphatase superfamily (branch 1) ACIFE_RS03705 PF00342 Phosphoglucose isomerase ACIFE_RS03710 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACIFE_RS03715 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACIFE_RS03715 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACIFE_RS03720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS03720 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS03720 PF00403 Heavy-metal-associated domain ACIFE_RS03730 PF00343 Carbohydrate phosphorylase ACIFE_RS03730 PF11897 Protein of unknown function (DUF3417) ACIFE_RS03735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACIFE_RS03735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACIFE_RS03740 PF03952 Enolase, N-terminal domain ACIFE_RS03740 PF00113 Enolase, C-terminal TIM barrel domain ACIFE_RS03745 PF02887 Pyruvate kinase, alpha/beta domain ACIFE_RS03745 PF00391 PEP-utilising enzyme, mobile domain ACIFE_RS03745 PF00224 Pyruvate kinase, barrel domain ACIFE_RS03755 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS03755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS03760 PF00689 Cation transporting ATPase, C-terminus ACIFE_RS03760 PF00690 Cation transporter/ATPase, N-terminus ACIFE_RS03765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIFE_RS03765 PF02817 e3 binding domain ACIFE_RS03765 PF00364 Biotin-requiring enzyme ACIFE_RS03770 PF02779 Transketolase, pyrimidine binding domain ACIFE_RS03770 PF00364 Biotin-requiring enzyme ACIFE_RS03770 PF02780 Transketolase, C-terminal domain ACIFE_RS03775 PF00676 Dehydrogenase E1 component ACIFE_RS03785 PF03976 Polyphosphate kinase 2 (PPK2) ACIFE_RS03790 PF00162 Phosphoglycerate kinase ACIFE_RS03795 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACIFE_RS03795 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACIFE_RS03800 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase ACIFE_RS03800 PF09363 XFP C-terminal domain ACIFE_RS03800 PF09364 XFP N-terminal domain ACIFE_RS03820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS03825 PF00873 AcrB/AcrD/AcrF family ACIFE_RS03860 PF01695 IstB-like ATP binding protein ACIFE_RS03865 PF00873 AcrB/AcrD/AcrF family ACIFE_RS03880 PF00403 Heavy-metal-associated domain ACIFE_RS03885 PF01022 Bacterial regulatory protein, arsR family ACIFE_RS03890 PF00872 Transposase, Mutator family ACIFE_RS03895 PF11426 Tn7 transposition regulator TnsC ACIFE_RS03895 PF13401 AAA domain ACIFE_RS03915 PF02384 N-6 DNA Methylase ACIFE_RS03915 PF12161 HsdM N-terminal domain ACIFE_RS03930 PF01420 Type I restriction modification DNA specificity domain ACIFE_RS03935 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ACIFE_RS03940 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ACIFE_RS03945 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACIFE_RS03945 PF04851 Type III restriction enzyme, res subunit ACIFE_RS03945 PF00271 Helicase conserved C-terminal domain ACIFE_RS03945 PF08463 EcoEI R protein C-terminal ACIFE_RS03965 PF06144 DNA polymerase III, delta subunit ACIFE_RS03965 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ACIFE_RS03975 PF13603 Leucyl-tRNA synthetase, Domain 2 ACIFE_RS03975 PF00133 tRNA synthetases class I (I, L, M and V) ACIFE_RS03975 PF08264 Anticodon-binding domain of tRNA ACIFE_RS03985 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system ACIFE_RS04005 PF01427 D-ala-D-ala dipeptidase ACIFE_RS04010 PF01740 STAS domain ACIFE_RS04010 PF00916 Sulfate permease family ACIFE_RS04015 PF06827 Zinc finger found in FPG and IleRS ACIFE_RS04015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACIFE_RS04015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACIFE_RS04025 PF16916 Dimerisation domain of Zinc Transporter ACIFE_RS04025 PF01545 Cation efflux family ACIFE_RS04030 PF00120 Glutamine synthetase, catalytic domain ACIFE_RS04030 PF03951 Glutamine synthetase, beta-Grasp domain ACIFE_RS04040 PF01975 Survival protein SurE ACIFE_RS04055 PF01975 Survival protein SurE ACIFE_RS04065 PF04539 Sigma-70 region 3 ACIFE_RS04065 PF04542 Sigma-70 region 2 ACIFE_RS04065 PF00140 Sigma-70 factor, region 1.2 ACIFE_RS04065 PF04545 Sigma-70, region 4 ACIFE_RS04070 PF04430 Protein of unknown function (DUF498/DUF598) ACIFE_RS04075 PF00155 Aminotransferase class I and II ACIFE_RS04080 PF03447 Homoserine dehydrogenase, NAD binding domain ACIFE_RS04080 PF01842 ACT domain ACIFE_RS04080 PF00742 Homoserine dehydrogenase ACIFE_RS04085 PF00291 Pyridoxal-phosphate dependent enzyme ACIFE_RS04120 PF17768 RecJ OB domain ACIFE_RS04120 PF02272 DHHA1 domain ACIFE_RS04120 PF01368 DHH family ACIFE_RS04135 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ACIFE_RS04150 PF06250 YhcG PDDEXK nuclease domain ACIFE_RS04150 PF17761 DUF1016 N-terminal domain ACIFE_RS04160 PF10544 T5orf172 domain ACIFE_RS04170 PF00266 Aminotransferase class-V ACIFE_RS04205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS04210 PF00873 AcrB/AcrD/AcrF family ACIFE_RS04250 PF00158 Sigma-54 interaction domain ACIFE_RS04250 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS04250 PF00072 Response regulator receiver domain ACIFE_RS04300 PF07238 PilZ domain ACIFE_RS04300 PF00535 Glycosyl transferase family 2 ACIFE_RS04305 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS04305 PF00563 EAL domain ACIFE_RS04305 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS04320 PF01548 Transposase ACIFE_RS04320 PF02371 Transposase IS116/IS110/IS902 family ACIFE_RS04340 PF17768 RecJ OB domain ACIFE_RS04340 PF02272 DHHA1 domain ACIFE_RS04340 PF01368 DHH family ACIFE_RS04350 PF03462 PCRF domain ACIFE_RS04350 PF00472 RF-1 domain ACIFE_RS04355 PF01336 OB-fold nucleic acid binding domain ACIFE_RS04355 PF00152 tRNA synthetases class II (D, K and N) ACIFE_RS04360 PF02687 FtsX-like permease family ACIFE_RS04360 PF12704 MacB-like periplasmic core domain ACIFE_RS04365 PF00005 ABC transporter ACIFE_RS04375 PF03772 Competence protein ACIFE_RS04375 PF00753 Metallo-beta-lactamase superfamily ACIFE_RS04380 PF01618 MotA/TolQ/ExbB proton channel family ACIFE_RS04385 PF02472 Biopolymer transport protein ExbD/TolR ACIFE_RS04400 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACIFE_RS04405 PF03966 Trm112p-like protein ACIFE_RS04410 PF02348 Cytidylyltransferase ACIFE_RS04415 PF00719 Inorganic pyrophosphatase ACIFE_RS04470 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACIFE_RS04490 PF08681 Protein of unknown function (DUF1778) ACIFE_RS04500 PF03167 Uracil DNA glycosylase superfamily ACIFE_RS04505 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ACIFE_RS04510 PF17871 AAA lid domain ACIFE_RS04510 PF00004 ATPase family associated with various cellular activities (AAA) ACIFE_RS04510 PF07724 AAA domain (Cdc48 subfamily) ACIFE_RS04510 PF02861 Clp amino terminal domain, pathogenicity island component ACIFE_RS04510 PF10431 C-terminal, D2-small domain, of ClpB protein ACIFE_RS04515 PF02617 ATP-dependent Clp protease adaptor protein ClpS ACIFE_RS04530 PF03572 Peptidase family S41 ACIFE_RS04530 PF13180 PDZ domain ACIFE_RS04540 PF01676 Metalloenzyme superfamily ACIFE_RS04540 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACIFE_RS04545 PF00343 Carbohydrate phosphorylase ACIFE_RS04555 PF00581 Rhodanese-like domain ACIFE_RS04560 PF00294 pfkB family carbohydrate kinase ACIFE_RS04570 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACIFE_RS04570 PF02772 S-adenosylmethionine synthetase, central domain ACIFE_RS04570 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACIFE_RS04580 PF05221 S-adenosyl-L-homocysteine hydrolase ACIFE_RS04580 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ACIFE_RS04585 PF02219 Methylenetetrahydrofolate reductase ACIFE_RS04590 PF00485 Phosphoribulokinase / Uridine kinase family ACIFE_RS04605 PF00271 Helicase conserved C-terminal domain ACIFE_RS04605 PF00270 DEAD/DEAH box helicase ACIFE_RS04605 PF03880 DbpA RNA binding domain ACIFE_RS04605 PF12343 Cold shock protein DEAD box A ACIFE_RS04610 PF00313 'Cold-shock' DNA-binding domain ACIFE_RS04615 PF00271 Helicase conserved C-terminal domain ACIFE_RS04615 PF00270 DEAD/DEAH box helicase ACIFE_RS04615 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACIFE_RS04615 PF18074 Primosomal protein N C-terminal domain ACIFE_RS04615 PF17764 3′ DNA-binding domain (3′BD) ACIFE_RS04620 PF01040 UbiA prenyltransferase family ACIFE_RS04630 PF00398 Ribosomal RNA adenine dimethylase ACIFE_RS04640 PF04055 Radical SAM superfamily ACIFE_RS04640 PF00919 Uncharacterized protein family UPF0004 ACIFE_RS04640 PF01938 TRAM domain ACIFE_RS04645 PF02562 PhoH-like protein ACIFE_RS04650 PF02130 Uncharacterized protein family UPF0054 ACIFE_RS04655 PF03471 Transporter associated domain ACIFE_RS04655 PF00571 CBS domain ACIFE_RS04660 PF00795 Carbon-nitrogen hydrolase ACIFE_RS04665 PF01523 Putative modulator of DNA gyrase ACIFE_RS04675 PF00005 ABC transporter ACIFE_RS04685 PF00950 ABC 3 transport family ACIFE_RS04700 PF01370 NAD dependent epimerase/dehydratase family ACIFE_RS04725 PF04101 Glycosyltransferase family 28 C-terminal domain ACIFE_RS04725 PF03033 Glycosyltransferase family 28 N-terminal domain ACIFE_RS04730 PF13439 Glycosyltransferase Family 4 ACIFE_RS04730 PF00534 Glycosyl transferases group 1 ACIFE_RS04735 PF13439 Glycosyltransferase Family 4 ACIFE_RS04735 PF00534 Glycosyl transferases group 1 ACIFE_RS04740 PF00664 ABC transporter transmembrane region ACIFE_RS04740 PF00005 ABC transporter ACIFE_RS04745 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACIFE_RS04745 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACIFE_RS04745 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACIFE_RS04770 PF08241 Methyltransferase domain ACIFE_RS04775 PF00330 Aconitase family (aconitate hydratase) ACIFE_RS04780 PF00694 Aconitase C-terminal domain ACIFE_RS04790 PF01243 Pyridoxamine 5'-phosphate oxidase ACIFE_RS04790 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACIFE_RS04795 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ACIFE_RS04810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACIFE_RS04810 PF06481 COX Aromatic Rich Motif ACIFE_RS04820 PF00510 Cytochrome c oxidase subunit III ACIFE_RS04830 PF01040 UbiA prenyltransferase family ACIFE_RS04840 PF02673 Bacitracin resistance protein BacA ACIFE_RS04845 PF01272 Transcription elongation factor, GreA/GreB, C-term ACIFE_RS04845 PF03449 Transcription elongation factor, N-terminal ACIFE_RS04850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIFE_RS04850 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACIFE_RS04850 PF02142 MGS-like domain ACIFE_RS04855 PF00117 Glutamine amidotransferase class-I ACIFE_RS04855 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ACIFE_RS04870 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACIFE_RS04870 PF06481 COX Aromatic Rich Motif ACIFE_RS04875 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACIFE_RS04880 PF00510 Cytochrome c oxidase subunit III ACIFE_RS04945 PF00005 ABC transporter ACIFE_RS04955 PF00239 Resolvase, N terminal domain ACIFE_RS04955 PF02796 Helix-turn-helix domain of resolvase ACIFE_RS05000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIFE_RS05000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIFE_RS05000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIFE_RS05000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIFE_RS05020 PF00296 Luciferase-like monooxygenase ACIFE_RS05025 PF00929 Exonuclease ACIFE_RS05030 PF00072 Response regulator receiver domain ACIFE_RS05030 PF00486 Transcriptional regulatory protein, C terminal ACIFE_RS05035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS05035 PF00672 HAMP domain ACIFE_RS05035 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS05055 PF01618 MotA/TolQ/ExbB proton channel family ACIFE_RS05060 PF02472 Biopolymer transport protein ExbD/TolR ACIFE_RS05070 PF04185 Phosphoesterase family ACIFE_RS05080 PF01180 Dihydroorotate dehydrogenase ACIFE_RS05085 PF01218 Coproporphyrinogen III oxidase ACIFE_RS05090 PF01300 Telomere recombination ACIFE_RS05095 PF02843 Phosphoribosylglycinamide synthetase, C domain ACIFE_RS05095 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACIFE_RS05095 PF02844 Phosphoribosylglycinamide synthetase, N domain ACIFE_RS05100 PF02142 MGS-like domain ACIFE_RS05100 PF01808 AICARFT/IMPCHase bienzyme ACIFE_RS05115 PF02669 K+-transporting ATPase, c chain ACIFE_RS05125 PF03814 Potassium-transporting ATPase A subunit ACIFE_RS05135 PF13493 Domain of unknown function (DUF4118) ACIFE_RS05135 PF13492 GAF domain ACIFE_RS05135 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS05135 PF02702 Osmosensitive K+ channel His kinase sensor domain ACIFE_RS05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS05140 PF00072 Response regulator receiver domain ACIFE_RS05140 PF00486 Transcriptional regulatory protein, C terminal ACIFE_RS05160 PF13520 Amino acid permease ACIFE_RS05170 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS05170 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS05170 PF00563 EAL domain ACIFE_RS05175 PF00912 Transglycosylase ACIFE_RS05175 PF17092 Penicillin-binding protein OB-like domain ACIFE_RS05175 PF00905 Penicillin binding protein transpeptidase domain ACIFE_RS05180 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIFE_RS05185 PF01406 tRNA synthetases class I (C) catalytic domain ACIFE_RS05185 PF09190 DALR domain ACIFE_RS05190 PF00575 S1 RNA binding domain ACIFE_RS05190 PF10150 Ribonuclease E/G family ACIFE_RS05190 PF12111 Polyribonucleotide phosphorylase C terminal ACIFE_RS05195 PF01479 S4 domain ACIFE_RS05195 PF00849 RNA pseudouridylate synthase ACIFE_RS05200 PF00563 EAL domain ACIFE_RS05200 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS05200 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS05210 PF00459 Inositol monophosphatase family ACIFE_RS05215 PF00588 SpoU rRNA Methylase family ACIFE_RS05220 PF00132 Bacterial transferase hexapeptide (six repeats) ACIFE_RS05225 PF02082 Transcriptional regulator ACIFE_RS05230 PF00266 Aminotransferase class-V ACIFE_RS05235 PF01592 NifU-like N terminal domain ACIFE_RS05240 PF01521 Iron-sulphur cluster biosynthesis ACIFE_RS05245 PF07743 HSCB C-terminal oligomerisation domain ACIFE_RS05250 PF00012 Hsp70 protein ACIFE_RS05255 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIFE_RS05260 PF04384 Iron-sulphur cluster assembly ACIFE_RS05270 PF01734 Patatin-like phospholipase ACIFE_RS05285 PF00756 Putative esterase ACIFE_RS05290 PF05690 Thiazole biosynthesis protein ThiG ACIFE_RS05290 PF02597 ThiS family ACIFE_RS05295 PF05690 Thiazole biosynthesis protein ThiG ACIFE_RS05305 PF01225 Mur ligase family, catalytic domain ACIFE_RS05305 PF08245 Mur ligase middle domain ACIFE_RS05305 PF02875 Mur ligase family, glutamate ligase domain ACIFE_RS05310 PF02441 Flavoprotein ACIFE_RS05315 PF00005 ABC transporter ACIFE_RS05320 PF02405 Permease MlaE ACIFE_RS05340 PF00899 ThiF family ACIFE_RS05355 PF12704 MacB-like periplasmic core domain ACIFE_RS05355 PF02687 FtsX-like permease family ACIFE_RS05360 PF00005 ABC transporter ACIFE_RS05370 PF00085 Thioredoxin ACIFE_RS05375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIFE_RS05375 PF07498 Rho termination factor, N-terminal domain ACIFE_RS05375 PF07497 Rho termination factor, RNA-binding domain ACIFE_RS05380 PF01197 Ribosomal protein L31 ACIFE_RS05385 PF00390 Malic enzyme, N-terminal domain ACIFE_RS05385 PF03949 Malic enzyme, NAD binding domain ACIFE_RS05390 PF01594 AI-2E family transporter ACIFE_RS05395 PF00920 Dehydratase family ACIFE_RS05405 PF00583 Acetyltransferase (GNAT) family ACIFE_RS05405 PF00696 Amino acid kinase family ACIFE_RS05410 PF01722 BolA-like protein ACIFE_RS05415 PF03795 YCII-related domain ACIFE_RS05420 PF04279 Intracellular septation protein A ACIFE_RS05435 PF01381 Helix-turn-helix ACIFE_RS05440 PF01909 Nucleotidyltransferase domain ACIFE_RS05480 PF01850 PIN domain ACIFE_RS05485 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ACIFE_RS05495 PF00483 Nucleotidyl transferase ACIFE_RS05495 PF01050 Mannose-6-phosphate isomerase ACIFE_RS05510 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS05515 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS05550 PF02397 Bacterial sugar transferase ACIFE_RS05555 PF00535 Glycosyl transferase family 2 ACIFE_RS05560 PF13439 Glycosyltransferase Family 4 ACIFE_RS05560 PF00534 Glycosyl transferases group 1 ACIFE_RS05570 PF13439 Glycosyltransferase Family 4 ACIFE_RS05570 PF00534 Glycosyl transferases group 1 ACIFE_RS05585 PF01370 NAD dependent epimerase/dehydratase family ACIFE_RS05590 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACIFE_RS05595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIFE_RS05600 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS05605 PF00483 Nucleotidyl transferase ACIFE_RS05610 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS05620 PF13807 G-rich domain on putative tyrosine kinase ACIFE_RS05620 PF02706 Chain length determinant protein ACIFE_RS05620 PF13614 AAA domain ACIFE_RS05625 PF10531 SLBB domain ACIFE_RS05625 PF02563 Polysaccharide biosynthesis/export protein ACIFE_RS05645 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACIFE_RS05675 PF02397 Bacterial sugar transferase ACIFE_RS05710 PF13542 Helix-turn-helix domain of transposase family ISL3 ACIFE_RS05710 PF01610 Transposase ACIFE_RS05710 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ACIFE_RS05715 PF04221 RelB antitoxin ACIFE_RS05735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACIFE_RS05740 PF01738 Dienelactone hydrolase family ACIFE_RS05745 PF00440 Bacterial regulatory proteins, tetR family ACIFE_RS05745 PF16925 Tetracyclin repressor-like, C-terminal domain ACIFE_RS05755 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACIFE_RS05755 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACIFE_RS05760 PF06965 Na+/H+ antiporter 1 ACIFE_RS05765 PF10458 Valyl tRNA synthetase tRNA binding arm ACIFE_RS05765 PF00133 tRNA synthetases class I (I, L, M and V) ACIFE_RS05765 PF08264 Anticodon-binding domain of tRNA ACIFE_RS05775 PF04364 DNA polymerase III chi subunit, HolC ACIFE_RS05780 PF00883 Cytosol aminopeptidase family, catalytic domain ACIFE_RS05780 PF02789 Cytosol aminopeptidase family, N-terminal domain ACIFE_RS05785 PF03739 Lipopolysaccharide export system permease LptF/LptG ACIFE_RS05810 PF01491 Frataxin-like domain ACIFE_RS05815 PF00270 DEAD/DEAH box helicase ACIFE_RS05815 PF09382 RQC domain ACIFE_RS05815 PF16124 RecQ zinc-binding ACIFE_RS05815 PF00570 HRDC domain ACIFE_RS05815 PF00271 Helicase conserved C-terminal domain ACIFE_RS05820 PF00149 Calcineurin-like phosphoesterase ACIFE_RS05830 PF00528 Binding-protein-dependent transport system inner membrane component ACIFE_RS05835 PF00005 ABC transporter ACIFE_RS05835 PF08402 TOBE domain ACIFE_RS05840 PF01649 Ribosomal protein S20 ACIFE_RS05845 PF13361 UvrD-like helicase C-terminal domain ACIFE_RS05845 PF00580 UvrD/REP helicase N-terminal domain ACIFE_RS05850 PF01790 Prolipoprotein diacylglyceryl transferase ACIFE_RS05855 PF04371 Porphyromonas-type peptidyl-arginine deiminase ACIFE_RS05860 PF00849 RNA pseudouridylate synthase ACIFE_RS05860 PF01479 S4 domain ACIFE_RS05865 PF00293 NUDIX domain ACIFE_RS05870 PF00293 NUDIX domain ACIFE_RS05880 PF14883 Hypothetical glycosyl hydrolase family 13 ACIFE_RS05880 PF01522 Polysaccharide deacetylase ACIFE_RS05890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS05890 PF03466 LysR substrate binding domain ACIFE_RS05895 PF00092 von Willebrand factor type A domain ACIFE_RS05900 PF07728 AAA domain (dynein-related subfamily) ACIFE_RS05900 PF08406 CbbQ/NirQ/NorQ C-terminal ACIFE_RS05905 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ACIFE_RS05905 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ACIFE_RS05910 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACIFE_RS05915 PF00374 Nickel-dependent hydrogenase ACIFE_RS05915 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACIFE_RS05915 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACIFE_RS05920 PF00361 Proton-conducting membrane transporter ACIFE_RS05930 PF00146 NADH dehydrogenase ACIFE_RS05935 PF00361 Proton-conducting membrane transporter ACIFE_RS05940 PF01381 Helix-turn-helix ACIFE_RS05940 PF07883 Cupin domain ACIFE_RS05945 PF06071 Protein of unknown function (DUF933) ACIFE_RS05945 PF01926 50S ribosome-binding GTPase ACIFE_RS05950 PF01195 Peptidyl-tRNA hydrolase ACIFE_RS05955 PF14693 Ribosomal protein TL5, C-terminal domain ACIFE_RS05955 PF01386 Ribosomal L25p family ACIFE_RS05960 PF03717 Penicillin-binding Protein dimerisation domain ACIFE_RS05960 PF00905 Penicillin binding protein transpeptidase domain ACIFE_RS05975 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACIFE_RS06005 PF00582 Universal stress protein family ACIFE_RS06010 PF03129 Anticodon binding domain ACIFE_RS06010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIFE_RS06010 PF04073 Aminoacyl-tRNA editing domain ACIFE_RS06030 PF02556 Preprotein translocase subunit SecB ACIFE_RS06035 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACIFE_RS06035 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACIFE_RS06045 PF13249 Squalene-hopene cyclase N-terminal domain ACIFE_RS06045 PF13243 Squalene-hopene cyclase C-terminal domain ACIFE_RS06055 PF01370 NAD dependent epimerase/dehydratase family ACIFE_RS06065 PF04055 Radical SAM superfamily ACIFE_RS06065 PF01938 TRAM domain ACIFE_RS06065 PF00919 Uncharacterized protein family UPF0004 ACIFE_RS06070 PF04794 YdjC-like protein ACIFE_RS06085 PF04055 Radical SAM superfamily ACIFE_RS06085 PF13186 Iron-sulfur cluster-binding domain ACIFE_RS06090 PF05494 MlaC protein ACIFE_RS06100 PF02686 Glu-tRNAGln amidotransferase C subunit ACIFE_RS06105 PF01425 Amidase ACIFE_RS06110 PF02637 GatB domain ACIFE_RS06110 PF02934 GatB/GatE catalytic domain ACIFE_RS06120 PF00270 DEAD/DEAH box helicase ACIFE_RS06120 PF00271 Helicase conserved C-terminal domain ACIFE_RS06125 PF00072 Response regulator receiver domain ACIFE_RS06125 PF00486 Transcriptional regulatory protein, C terminal ACIFE_RS06130 PF11808 Phosphate regulon sensor protein PhoR ACIFE_RS06130 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS06130 PF00989 PAS fold ACIFE_RS06135 PF12849 PBP superfamily domain ACIFE_RS06140 PF00528 Binding-protein-dependent transport system inner membrane component ACIFE_RS06145 PF00528 Binding-protein-dependent transport system inner membrane component ACIFE_RS06150 PF00005 ABC transporter ACIFE_RS06155 PF01895 PhoU domain ACIFE_RS06160 PF02541 Ppx/GppA phosphatase family ACIFE_RS06165 PF00534 Glycosyl transferases group 1 ACIFE_RS06165 PF13439 Glycosyltransferase Family 4 ACIFE_RS06175 PF00318 Ribosomal protein S2 ACIFE_RS06180 PF00889 Elongation factor TS ACIFE_RS06185 PF00696 Amino acid kinase family ACIFE_RS06190 PF01765 Ribosome recycling factor ACIFE_RS06195 PF01255 Putative undecaprenyl diphosphate synthase ACIFE_RS06205 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACIFE_RS06205 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACIFE_RS06205 PF13288 DXP reductoisomerase C-terminal domain ACIFE_RS06210 PF17820 PDZ domain ACIFE_RS06210 PF02163 Peptidase family M50 ACIFE_RS06215 PF07244 Surface antigen variable number repeat ACIFE_RS06215 PF01103 Surface antigen ACIFE_RS06225 PF00132 Bacterial transferase hexapeptide (six repeats) ACIFE_RS06225 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACIFE_RS06230 PF07977 FabA-like domain ACIFE_RS06235 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACIFE_RS06235 PF00132 Bacterial transferase hexapeptide (six repeats) ACIFE_RS06240 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACIFE_RS06240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACIFE_RS06245 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIFE_RS06250 PF02684 Lipid-A-disaccharide synthetase ACIFE_RS06255 PF01351 Ribonuclease HII ACIFE_RS06260 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACIFE_RS06260 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACIFE_RS06260 PF02811 PHP domain ACIFE_RS06260 PF14579 Helix-hairpin-helix motif ACIFE_RS06260 PF01336 OB-fold nucleic acid binding domain ACIFE_RS06265 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACIFE_RS06270 PF01171 PP-loop family ACIFE_RS06270 PF11734 TilS substrate C-terminal domain ACIFE_RS06270 PF09179 TilS substrate binding domain ACIFE_RS06275 PF01979 Amidohydrolase family ACIFE_RS06280 PF01258 Prokaryotic dksA/traR C4-type zinc finger ACIFE_RS06285 PF13419 Haloacid dehalogenase-like hydrolase ACIFE_RS06290 PF01270 Glycosyl hydrolases family 8 ACIFE_RS06305 PF03170 Bacterial cellulose synthase subunit ACIFE_RS06310 PF07238 PilZ domain ACIFE_RS06310 PF00535 Glycosyl transferase family 2 ACIFE_RS06315 PF00483 Nucleotidyl transferase ACIFE_RS06325 PF06745 KaiC ACIFE_RS06330 PF00563 EAL domain ACIFE_RS06330 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS06330 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS06340 PF06745 KaiC ACIFE_RS06370 PF00563 EAL domain ACIFE_RS06370 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS06370 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS06375 PF00072 Response regulator receiver domain ACIFE_RS06375 PF01627 Hpt domain ACIFE_RS06375 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS06375 PF00672 HAMP domain ACIFE_RS06375 PF17149 Periplasmic sensor domain found in signal transduction proteins ACIFE_RS06380 PF08241 Methyltransferase domain ACIFE_RS06385 PF01545 Cation efflux family ACIFE_RS06390 PF00753 Metallo-beta-lactamase superfamily ACIFE_RS06390 PF00581 Rhodanese-like domain ACIFE_RS06400 PF07690 Major Facilitator Superfamily ACIFE_RS06445 PF17757 UvrB interaction domain ACIFE_RS06445 PF12344 Ultra-violet resistance protein B ACIFE_RS06445 PF02151 UvrB/uvrC motif ACIFE_RS06445 PF04851 Type III restriction enzyme, res subunit ACIFE_RS06445 PF00271 Helicase conserved C-terminal domain ACIFE_RS06450 PF00107 Zinc-binding dehydrogenase ACIFE_RS06450 PF08240 Alcohol dehydrogenase GroES-like domain ACIFE_RS06455 PF06418 CTP synthase N-terminus ACIFE_RS06455 PF00117 Glutamine amidotransferase class-I ACIFE_RS06460 PF00793 DAHP synthetase I family ACIFE_RS06465 PF00113 Enolase, C-terminal TIM barrel domain ACIFE_RS06465 PF03952 Enolase, N-terminal domain ACIFE_RS06470 PF04977 Septum formation initiator ACIFE_RS06475 PF09285 Elongation factor P, C-terminal ACIFE_RS06475 PF08207 Elongation factor P (EF-P) KOW-like domain ACIFE_RS06475 PF01132 Elongation factor P (EF-P) OB domain ACIFE_RS06485 PF08459 UvrC Helix-hairpin-helix N-terminal ACIFE_RS06485 PF01541 GIY-YIG catalytic domain ACIFE_RS06485 PF02151 UvrB/uvrC motif ACIFE_RS06490 PF01066 CDP-alcohol phosphatidyltransferase ACIFE_RS06505 PF01207 Dihydrouridine synthase (Dus) ACIFE_RS06510 PF01022 Bacterial regulatory protein, arsR family ACIFE_RS06515 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACIFE_RS06515 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACIFE_RS06520 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ACIFE_RS06520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACIFE_RS06525 PF02222 ATP-grasp domain ACIFE_RS06525 PF01370 NAD dependent epimerase/dehydratase family ACIFE_RS06530 PF00155 Aminotransferase class I and II ACIFE_RS06535 PF00664 ABC transporter transmembrane region ACIFE_RS06535 PF00005 ABC transporter ACIFE_RS06610 PF17785 PUA-like domain ACIFE_RS06610 PF10672 S-adenosylmethionine-dependent methyltransferase ACIFE_RS06615 PF01008 Initiation factor 2 subunit family ACIFE_RS06620 PF00521 DNA gyrase/topoisomerase IV, subunit A ACIFE_RS06620 PF03989 DNA gyrase C-terminal domain, beta-propeller ACIFE_RS06625 PF00266 Aminotransferase class-V ACIFE_RS06630 PF01817 Chorismate mutase type II ACIFE_RS06630 PF01842 ACT domain ACIFE_RS06630 PF00800 Prephenate dehydratase ACIFE_RS06635 PF00155 Aminotransferase class I and II ACIFE_RS06640 PF18152 DAHP synthase ferredoxin-like domain ACIFE_RS06640 PF00793 DAHP synthetase I family ACIFE_RS06650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIFE_RS06655 PF02224 Cytidylate kinase ACIFE_RS06660 PF00575 S1 RNA binding domain ACIFE_RS06665 PF00216 Bacterial DNA-binding protein ACIFE_RS06670 PF18073 Rubredoxin metal binding domain ACIFE_RS06675 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACIFE_RS06680 PF00156 Phosphoribosyl transferase domain ACIFE_RS06685 PF05697 Bacterial trigger factor protein (TF) ACIFE_RS06685 PF05698 Bacterial trigger factor protein (TF) C-terminus ACIFE_RS06685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIFE_RS06690 PF00574 Clp protease ACIFE_RS06695 PF06689 ClpX C4-type zinc finger ACIFE_RS06695 PF10431 C-terminal, D2-small domain, of ClpB protein ACIFE_RS06695 PF07724 AAA domain (Cdc48 subfamily) ACIFE_RS06700 PF05362 Lon protease (S16) C-terminal proteolytic domain ACIFE_RS06700 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACIFE_RS06700 PF00004 ATPase family associated with various cellular activities (AAA) ACIFE_RS06705 PF00216 Bacterial DNA-binding protein ACIFE_RS06720 PF13145 PPIC-type PPIASE domain ACIFE_RS06730 PF00717 Peptidase S24-like ACIFE_RS06730 PF01726 LexA DNA binding domain ACIFE_RS06740 PF01433 Peptidase family M1 domain ACIFE_RS06740 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ACIFE_RS06740 PF11940 Domain of unknown function (DUF3458) Ig-like fold ACIFE_RS06750 PF01928 CYTH domain ACIFE_RS06760 PF02503 Polyphosphate kinase middle domain ACIFE_RS06760 PF17941 Polyphosphate kinase C-terminal domain 1 ACIFE_RS06760 PF13089 Polyphosphate kinase N-terminal domain ACIFE_RS06760 PF13090 Polyphosphate kinase C-terminal domain 2 ACIFE_RS06765 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACIFE_RS06765 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACIFE_RS06770 PF00873 AcrB/AcrD/AcrF family ACIFE_RS06775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS06790 PF02545 Maf-like protein ACIFE_RS06795 PF00311 Phosphoenolpyruvate carboxylase ACIFE_RS06800 PF17209 Hfq protein ACIFE_RS06805 PF16360 GTP-binding GTPase Middle Region ACIFE_RS06805 PF13167 GTP-binding GTPase N-terminal ACIFE_RS06805 PF01926 50S ribosome-binding GTPase ACIFE_RS06810 PF01145 SPFH domain / Band 7 family ACIFE_RS06815 PF01145 SPFH domain / Band 7 family ACIFE_RS06820 PF13393 Histidyl-tRNA synthetase ACIFE_RS06825 PF00709 Adenylosuccinate synthetase ACIFE_RS06845 PF00773 RNB domain ACIFE_RS06845 PF08206 Ribonuclease B OB domain ACIFE_RS06845 PF17876 Cold shock domain ACIFE_RS06845 PF08461 Ribonuclease R winged-helix domain ACIFE_RS06850 PF03976 Polyphosphate kinase 2 (PPK2) ACIFE_RS06855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS06855 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS06860 PF18146 Damage-inducible protein CinA KH domain ACIFE_RS06860 PF00994 Probable molybdopterin binding domain ACIFE_RS06860 PF02464 Competence-damaged protein ACIFE_RS06865 PF00551 Formyl transferase ACIFE_RS06870 PF00586 AIR synthase related protein, N-terminal domain ACIFE_RS06870 PF02769 AIR synthase related protein, C-terminal domain ACIFE_RS06875 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACIFE_RS06875 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACIFE_RS06880 PF01066 CDP-alcohol phosphatidyltransferase ACIFE_RS06885 PF00308 Bacterial dnaA protein ACIFE_RS06885 PF08299 Bacterial dnaA protein helix-turn-helix ACIFE_RS06885 PF11638 DnaA N-terminal domain ACIFE_RS06890 PF03631 Virulence factor BrkB ACIFE_RS06900 PF02504 Fatty acid synthesis protein ACIFE_RS06905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACIFE_RS06905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACIFE_RS06910 PF00698 Acyl transferase domain ACIFE_RS06920 PF00550 Phosphopantetheine attachment site ACIFE_RS06925 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIFE_RS06925 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIFE_RS06935 PF02618 YceG-like family ACIFE_RS06940 PF02223 Thymidylate kinase ACIFE_RS06945 PF09115 DNA polymerase III, delta subunit, C terminal ACIFE_RS06985 PF02665 Nitrate reductase gamma subunit ACIFE_RS06990 PF02613 Nitrate reductase delta subunit ACIFE_RS06995 PF13247 4Fe-4S dicluster domain ACIFE_RS06995 PF14711 Respiratory nitrate reductase beta C-terminal ACIFE_RS07000 PF00384 Molybdopterin oxidoreductase ACIFE_RS07000 PF14710 Respiratory nitrate reductase alpha N-terminal ACIFE_RS07000 PF01568 Molydopterin dinucleotide binding domain ACIFE_RS07005 PF07690 Major Facilitator Superfamily ACIFE_RS07030 PF03595 Voltage-dependent anion channel ACIFE_RS07060 PF03472 Autoinducer binding domain ACIFE_RS07060 PF00196 Bacterial regulatory proteins, luxR family ACIFE_RS07075 PF00291 Pyridoxal-phosphate dependent enzyme ACIFE_RS07085 PF00892 EamA-like transporter family ACIFE_RS07090 PF01022 Bacterial regulatory protein, arsR family ACIFE_RS07095 PF13280 WYL domain ACIFE_RS07095 PF08279 HTH domain ACIFE_RS07105 PF01878 EVE domain ACIFE_RS07125 PF00155 Aminotransferase class I and II ACIFE_RS07130 PF03358 NADPH-dependent FMN reductase ACIFE_RS07150 PF01965 DJ-1/PfpI family ACIFE_RS07160 PF02567 Phenazine biosynthesis-like protein ACIFE_RS07165 PF01252 Signal peptidase (SPase) II ACIFE_RS07175 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ACIFE_RS07185 PF13657 HipA N-terminal domain ACIFE_RS07185 PF07804 HipA-like C-terminal domain ACIFE_RS07195 PF12170 DNA polymerase III tau subunit V interacting with alpha ACIFE_RS07195 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ACIFE_RS07195 PF12169 DNA polymerase III subunits gamma and tau domain III ACIFE_RS07200 PF02575 YbaB/EbfC DNA-binding family ACIFE_RS07205 PF13662 Toprim domain ACIFE_RS07205 PF02132 RecR protein ACIFE_RS07210 PF00909 Ammonium Transporter Family ACIFE_RS07215 PF03853 YjeF-related protein N-terminus ACIFE_RS07215 PF01256 Carbohydrate kinase ACIFE_RS07220 PF00202 Aminotransferase class-III ACIFE_RS07230 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACIFE_RS07235 PF01119 DNA mismatch repair protein, C-terminal domain ACIFE_RS07235 PF08676 MutL C terminal dimerisation domain ACIFE_RS07245 PF00334 Nucleoside diphosphate kinase ACIFE_RS07250 PF04055 Radical SAM superfamily ACIFE_RS07260 PF13464 Domain of unknown function (DUF4115) ACIFE_RS07265 PF04551 GcpE protein ACIFE_RS07270 PF13393 Histidyl-tRNA synthetase ACIFE_RS07270 PF03129 Anticodon binding domain ACIFE_RS07280 PF13360 PQQ-like domain ACIFE_RS07285 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACIFE_RS07285 PF01926 50S ribosome-binding GTPase ACIFE_RS07305 PF12849 PBP superfamily domain ACIFE_RS07310 PF00528 Binding-protein-dependent transport system inner membrane component ACIFE_RS07315 PF00528 Binding-protein-dependent transport system inner membrane component ACIFE_RS07335 PF00230 Major intrinsic protein ACIFE_RS07340 PF02374 Anion-transporting ATPase ACIFE_RS07345 PF06953 Arsenical resistance operon trans-acting repressor ArsD ACIFE_RS07350 PF01451 Low molecular weight phosphotyrosine protein phosphatase ACIFE_RS07390 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACIFE_RS07415 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ACIFE_RS07415 PF14850 DNA-binding domain of Proline dehydrogenase ACIFE_RS07415 PF01619 Proline dehydrogenase ACIFE_RS07415 PF00171 Aldehyde dehydrogenase family ACIFE_RS07430 PF05567 Neisseria PilC beta-propeller domain ACIFE_RS07450 PF00482 Type II secretion system (T2SS), protein F ACIFE_RS07470 PF07963 Prokaryotic N-terminal methylation motif ACIFE_RS07470 PF00114 Pilin (bacterial filament) ACIFE_RS07495 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ACIFE_RS07495 PF13542 Helix-turn-helix domain of transposase family ISL3 ACIFE_RS07495 PF01610 Transposase ACIFE_RS07510 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system ACIFE_RS07530 PF00183 Hsp90 protein ACIFE_RS07530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS07540 PF01381 Helix-turn-helix ACIFE_RS07560 PF13784 Fic/DOC family N-terminal ACIFE_RS07560 PF02661 Fic/DOC family ACIFE_RS07570 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS07570 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS07570 PF00563 EAL domain ACIFE_RS07590 PF07238 PilZ domain ACIFE_RS07590 PF00535 Glycosyl transferase family 2 ACIFE_RS07590 PF03552 Cellulose synthase ACIFE_RS07590 PF03170 Bacterial cellulose synthase subunit ACIFE_RS07595 PF01270 Glycosyl hydrolases family 8 ACIFE_RS07600 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ACIFE_RS07600 PF13181 Tetratricopeptide repeat ACIFE_RS07605 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) ACIFE_RS07610 PF00378 Enoyl-CoA hydratase/isomerase ACIFE_RS07615 PF01627 Hpt domain ACIFE_RS07615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS07615 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS07615 PF00072 Response regulator receiver domain ACIFE_RS07620 PF00072 Response regulator receiver domain ACIFE_RS07625 PF07238 PilZ domain ACIFE_RS07625 PF00535 Glycosyl transferase family 2 ACIFE_RS07630 PF03170 Bacterial cellulose synthase subunit ACIFE_RS07645 PF01270 Glycosyl hydrolases family 8 ACIFE_RS07650 PF00563 EAL domain ACIFE_RS07650 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS07650 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS07670 PF14489 QueF-like protein ACIFE_RS07675 PF02463 RecF/RecN/SMC N terminal domain ACIFE_RS07675 PF06470 SMC proteins Flexible Hinge Domain ACIFE_RS07685 PF01653 NAD-dependent DNA ligase adenylation domain ACIFE_RS07685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACIFE_RS07685 PF12826 Helix-hairpin-helix motif ACIFE_RS07685 PF00533 BRCA1 C Terminus (BRCT) domain ACIFE_RS07685 PF03120 NAD-dependent DNA ligase OB-fold domain ACIFE_RS07690 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ACIFE_RS07690 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACIFE_RS07710 PF00578 AhpC/TSA family ACIFE_RS07715 PF02562 PhoH-like protein ACIFE_RS07715 PF13638 PIN domain ACIFE_RS07720 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACIFE_RS07720 PF17944 Arginine decarboxylase C-terminal helical extension ACIFE_RS07720 PF17810 Arginine decarboxylase helical bundle domain ACIFE_RS07730 PF01557 Fumarylacetoacetate (FAA) hydrolase family ACIFE_RS07755 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS07760 PF00766 Electron transfer flavoprotein FAD-binding domain ACIFE_RS07760 PF01012 Electron transfer flavoprotein domain ACIFE_RS07765 PF01012 Electron transfer flavoprotein domain ACIFE_RS07770 PF01593 Flavin containing amine oxidoreductase ACIFE_RS07790 PF00355 Rieske [2Fe-2S] domain ACIFE_RS07805 PF00581 Rhodanese-like domain ACIFE_RS07815 PF03206 Nitrogen fixation protein NifW ACIFE_RS07820 PF00132 Bacterial transferase hexapeptide (six repeats) ACIFE_RS07825 PF00682 HMGL-like ACIFE_RS07830 PF00266 Aminotransferase class-V ACIFE_RS07835 PF01106 NifU-like domain ACIFE_RS07835 PF01592 NifU-like N terminal domain ACIFE_RS07835 PF04324 BFD-like [2Fe-2S] binding domain ACIFE_RS07840 PF01521 Iron-sulphur cluster biosynthesis ACIFE_RS07850 PF04891 NifQ ACIFE_RS07855 PF12838 4Fe-4S dicluster domain ACIFE_RS07860 PF05082 Rop-like ACIFE_RS07865 PF03270 Protein of unknown function, DUF269 ACIFE_RS07870 PF02579 Dinitrogenase iron-molybdenum cofactor ACIFE_RS07875 PF00148 Nitrogenase component 1 type Oxidoreductase ACIFE_RS07880 PF04324 BFD-like [2Fe-2S] binding domain ACIFE_RS07880 PF00148 Nitrogenase component 1 type Oxidoreductase ACIFE_RS07890 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIFE_RS07895 PF11844 Domain of unknown function (DUF3364) ACIFE_RS07895 PF00148 Nitrogenase component 1 type Oxidoreductase ACIFE_RS07900 PF00148 Nitrogenase component 1 type Oxidoreductase ACIFE_RS07905 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ACIFE_RS07915 PF07357 Dinitrogenase reductase ADP-ribosyltransferase (DRAT) ACIFE_RS07920 PF03747 ADP-ribosylglycohydrolase ACIFE_RS07925 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS07925 PF01590 GAF domain ACIFE_RS07925 PF00158 Sigma-54 interaction domain ACIFE_RS07930 PF02579 Dinitrogenase iron-molybdenum cofactor ACIFE_RS07930 PF04055 Radical SAM superfamily ACIFE_RS07935 PF00037 4Fe-4S binding domain ACIFE_RS07940 PF01521 Iron-sulphur cluster biosynthesis ACIFE_RS07955 PF01816 Leucine rich repeat variant ACIFE_RS07955 PF05484 LRV protein FeS4 cluster ACIFE_RS07960 PF04319 NifZ domain ACIFE_RS07970 PF00266 Aminotransferase class-V ACIFE_RS07975 PF06988 NifT/FixU protein ACIFE_RS07985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACIFE_RS07990 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIFE_RS08010 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ACIFE_RS08010 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ACIFE_RS08015 PF00171 Aldehyde dehydrogenase family ACIFE_RS08035 PF00294 pfkB family carbohydrate kinase ACIFE_RS08040 PF00534 Glycosyl transferases group 1 ACIFE_RS08040 PF00862 Sucrose synthase ACIFE_RS08045 PF00862 Sucrose synthase ACIFE_RS08045 PF00534 Glycosyl transferases group 1 ACIFE_RS08050 PF08808 RES domain ACIFE_RS08060 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIFE_RS08060 PF12833 Helix-turn-helix domain ACIFE_RS08060 PF06029 AlkA N-terminal domain ACIFE_RS08060 PF02805 Metal binding domain of Ada ACIFE_RS08065 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACIFE_RS08065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACIFE_RS08075 PF01850 PIN domain ACIFE_RS08085 PF01037 Lrp/AsnC ligand binding domain ACIFE_RS08090 PF08502 LeuA allosteric (dimerisation) domain ACIFE_RS08090 PF00682 HMGL-like ACIFE_RS08110 PF00689 Cation transporting ATPase, C-terminus ACIFE_RS08110 PF00690 Cation transporter/ATPase, N-terminus ACIFE_RS08115 PF00149 Calcineurin-like phosphoesterase ACIFE_RS08120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACIFE_RS08125 PF13520 Amino acid permease ACIFE_RS08135 PF13742 OB-fold nucleic acid binding domain ACIFE_RS08135 PF02601 Exonuclease VII, large subunit ACIFE_RS08140 PF00085 Thioredoxin ACIFE_RS08150 PF07690 Major Facilitator Superfamily ACIFE_RS08155 PF02609 Exonuclease VII small subunit ACIFE_RS08160 PF00348 Polyprenyl synthetase ACIFE_RS08165 PF02779 Transketolase, pyrimidine binding domain ACIFE_RS08165 PF02780 Transketolase, C-terminal domain ACIFE_RS08165 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACIFE_RS08170 PF02649 Type I GTP cyclohydrolase folE2 ACIFE_RS08175 PF01264 Chorismate synthase ACIFE_RS08185 PF07724 AAA domain (Cdc48 subfamily) ACIFE_RS08185 PF17871 AAA lid domain ACIFE_RS08185 PF02861 Clp amino terminal domain, pathogenicity island component ACIFE_RS08185 PF10431 C-terminal, D2-small domain, of ClpB protein ACIFE_RS08185 PF00004 ATPase family associated with various cellular activities (AAA) ACIFE_RS08190 PF13439 Glycosyltransferase Family 4 ACIFE_RS08190 PF00534 Glycosyl transferases group 1 ACIFE_RS08195 PF16177 Acetyl-coenzyme A synthetase N-terminus ACIFE_RS08195 PF00501 AMP-binding enzyme ACIFE_RS08195 PF13193 AMP-binding enzyme C-terminal domain ACIFE_RS08200 PF02254 TrkA-N domain ACIFE_RS08200 PF02080 TrkA-C domain ACIFE_RS08200 PF00999 Sodium/hydrogen exchanger family ACIFE_RS08205 PF01370 NAD dependent epimerase/dehydratase family ACIFE_RS08210 PF01370 NAD dependent epimerase/dehydratase family ACIFE_RS08245 PF00127 Copper binding proteins, plastocyanin/azurin family ACIFE_RS08255 PF00817 impB/mucB/samB family ACIFE_RS08255 PF11799 impB/mucB/samB family C-terminal domain ACIFE_RS08265 PF01850 PIN domain ACIFE_RS08290 PF03073 TspO/MBR family ACIFE_RS08310 PF01569 PAP2 superfamily ACIFE_RS08360 PF01266 FAD dependent oxidoreductase ACIFE_RS08365 PF04357 TamB, inner membrane protein subunit of TAM complex ACIFE_RS08370 PF17243 POTRA domain TamA domain 1 ACIFE_RS08370 PF07244 Surface antigen variable number repeat ACIFE_RS08370 PF01103 Surface antigen ACIFE_RS08400 PF07690 Major Facilitator Superfamily ACIFE_RS08405 PF01430 Hsp33 protein ACIFE_RS08410 PF01171 PP-loop family ACIFE_RS08415 PF00294 pfkB family carbohydrate kinase ACIFE_RS08415 PF01467 Cytidylyltransferase-like ACIFE_RS08420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACIFE_RS08420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACIFE_RS08420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACIFE_RS08425 PF01648 4'-phosphopantetheinyl transferase superfamily ACIFE_RS08430 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ACIFE_RS08435 PF11967 Recombination protein O N terminal ACIFE_RS08435 PF02565 Recombination protein O C terminal ACIFE_RS08440 PF07650 KH domain ACIFE_RS08440 PF01926 50S ribosome-binding GTPase ACIFE_RS08445 PF00035 Double-stranded RNA binding motif ACIFE_RS08445 PF14622 Ribonuclease-III-like ACIFE_RS08455 PF10502 Signal peptidase, peptidase S26 ACIFE_RS08460 PF00679 Elongation factor G C-terminus ACIFE_RS08460 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS08460 PF03144 Elongation factor Tu domain 2 ACIFE_RS08460 PF06421 GTP-binding protein LepA C-terminus ACIFE_RS08465 PF13180 PDZ domain ACIFE_RS08475 PF04542 Sigma-70 region 2 ACIFE_RS08475 PF08281 Sigma-70, region 4 ACIFE_RS08480 PF00890 FAD binding domain ACIFE_RS08480 PF02910 Fumarate reductase flavoprotein C-term ACIFE_RS08490 PF01571 Aminomethyltransferase folate-binding domain ACIFE_RS08510 PF12706 Beta-lactamase superfamily domain ACIFE_RS08510 PF03099 Biotin/lipoate A/B protein ligase family ACIFE_RS08515 PF01026 TatD related DNase ACIFE_RS08520 PF00588 SpoU rRNA Methylase family ACIFE_RS08520 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACIFE_RS08535 PF01594 AI-2E family transporter ACIFE_RS08540 PF02811 PHP domain ACIFE_RS08550 PF10417 C-terminal domain of 1-Cys peroxiredoxin ACIFE_RS08550 PF00578 AhpC/TSA family ACIFE_RS08555 PF11953 Domain of unknown function (DUF3470) ACIFE_RS08555 PF00037 4Fe-4S binding domain ACIFE_RS08560 PF00005 ABC transporter ACIFE_RS08560 PF00664 ABC transporter transmembrane region ACIFE_RS08565 PF01841 Transglutaminase-like superfamily ACIFE_RS08565 PF13559 Domain of unknown function (DUF4129) ACIFE_RS08565 PF11992 Domain of unknown function (DUF3488) ACIFE_RS08575 PF17863 AAA lid domain ACIFE_RS08575 PF07726 ATPase family associated with various cellular activities (AAA) ACIFE_RS08580 PF02347 Glycine cleavage system P-protein ACIFE_RS08585 PF02347 Glycine cleavage system P-protein ACIFE_RS08590 PF01597 Glycine cleavage H-protein ACIFE_RS08595 PF01571 Aminomethyltransferase folate-binding domain ACIFE_RS08595 PF08669 Glycine cleavage T-protein C-terminal barrel domain ACIFE_RS08600 PF04461 Protein of unknown function (DUF520) ACIFE_RS08605 PF02391 MoaE protein ACIFE_RS08610 PF02597 ThiS family ACIFE_RS08615 PF08496 Peptidase family S49 N-terminal ACIFE_RS08615 PF01343 Peptidase family S49 ACIFE_RS08625 PF04241 Protein of unknown function (DUF423) ACIFE_RS08640 PF00535 Glycosyl transferase family 2 ACIFE_RS08650 PF04349 Periplasmic glucan biosynthesis protein, MdoG ACIFE_RS08655 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS08655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS08665 PF02230 Phospholipase/Carboxylesterase ACIFE_RS08670 PF00158 Sigma-54 interaction domain ACIFE_RS08670 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS08670 PF00072 Response regulator receiver domain ACIFE_RS08675 PF13667 ThiC-associated domain ACIFE_RS08675 PF01964 Radical SAM ThiC family ACIFE_RS08705 PF00271 Helicase conserved C-terminal domain ACIFE_RS08705 PF04851 Type III restriction enzyme, res subunit ACIFE_RS08705 PF12137 RNA polymerase recycling family C-terminal ACIFE_RS08705 PF18337 RapA N-terminal Tudor like domain ACIFE_RS08705 PF18339 RapA N-terminal Tudor like domain 1 ACIFE_RS08710 PF12848 ABC transporter ACIFE_RS08710 PF00005 ABC transporter ACIFE_RS08720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIFE_RS08720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIFE_RS08720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIFE_RS08720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIFE_RS08725 PF12419 SNF2 Helicase protein ACIFE_RS08725 PF00271 Helicase conserved C-terminal domain ACIFE_RS08725 PF00176 SNF2 family N-terminal domain ACIFE_RS08745 PF00970 Oxidoreductase FAD-binding domain ACIFE_RS08745 PF00042 Globin ACIFE_RS08745 PF00175 Oxidoreductase NAD-binding domain ACIFE_RS08765 PF00586 AIR synthase related protein, N-terminal domain ACIFE_RS08765 PF02769 AIR synthase related protein, C-terminal domain ACIFE_RS08770 PF01924 Hydrogenase formation hypA family ACIFE_RS08775 PF01455 HupF/HypC family ACIFE_RS08780 PF07503 HypF finger ACIFE_RS08780 PF01300 Telomere recombination ACIFE_RS08780 PF00708 Acylphosphatase ACIFE_RS08780 PF17788 HypF Kae1-like domain ACIFE_RS08785 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACIFE_RS08790 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ACIFE_RS08800 PF01411 tRNA synthetases class II (A) ACIFE_RS08800 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIFE_RS08800 PF02272 DHHA1 domain ACIFE_RS08805 PF02631 RecX family ACIFE_RS08810 PF00154 recA bacterial DNA recombination protein ACIFE_RS08815 PF00994 Probable molybdopterin binding domain ACIFE_RS08815 PF18146 Damage-inducible protein CinA KH domain ACIFE_RS08815 PF02464 Competence-damaged protein ACIFE_RS08820 PF04608 Phosphatidylglycerophosphatase A ACIFE_RS08825 PF02769 AIR synthase related protein, C-terminal domain ACIFE_RS08825 PF00586 AIR synthase related protein, N-terminal domain ACIFE_RS08830 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACIFE_RS08835 PF17746 SfsA N-terminal OB domain ACIFE_RS08835 PF03749 Sugar fermentation stimulation protein RE domain ACIFE_RS08840 PF00557 Metallopeptidase family M24 ACIFE_RS08845 PF08335 GlnD PII-uridylyltransferase ACIFE_RS08845 PF01966 HD domain ACIFE_RS08845 PF01909 Nucleotidyltransferase domain ACIFE_RS08845 PF01842 ACT domain ACIFE_RS08850 PF04356 Protein of unknown function (DUF489) ACIFE_RS08890 PF01578 Cytochrome C assembly protein ACIFE_RS08895 PF05140 ResB-like family ACIFE_RS08920 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS08920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS08925 PF00072 Response regulator receiver domain ACIFE_RS08935 PF07690 Major Facilitator Superfamily ACIFE_RS08940 PF01040 UbiA prenyltransferase family ACIFE_RS08950 PF00127 Copper binding proteins, plastocyanin/azurin family ACIFE_RS08960 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACIFE_RS08965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACIFE_RS08975 PF00034 Cytochrome c ACIFE_RS08985 PF04241 Protein of unknown function (DUF423) ACIFE_RS08995 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) ACIFE_RS09000 PF00361 Proton-conducting membrane transporter ACIFE_RS09000 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIFE_RS09015 PF01979 Amidohydrolase family ACIFE_RS09020 PF00920 Dehydratase family ACIFE_RS09025 PF03729 Short repeat of unknown function (DUF308) ACIFE_RS09040 PF02627 Carboxymuconolactone decarboxylase family ACIFE_RS09045 PF01047 MarR family ACIFE_RS09060 PF00589 Phage integrase family ACIFE_RS09065 PF02195 ParB-like nuclease domain ACIFE_RS09065 PF17762 HTH domain found in ParB protein ACIFE_RS09070 PF13614 AAA domain ACIFE_RS09135 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ACIFE_RS09150 PF04956 TrbC/VIRB2 family ACIFE_RS09160 PF00437 Type II/IV secretion system protein ACIFE_RS09175 PF01131 DNA topoisomerase ACIFE_RS09175 PF01751 Toprim domain ACIFE_RS09190 PF07963 Prokaryotic N-terminal methylation motif ACIFE_RS09190 PF00114 Pilin (bacterial filament) ACIFE_RS09210 PF01367 5'-3' exonuclease, C-terminal SAM fold ACIFE_RS09210 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACIFE_RS09210 PF01612 3'-5' exonuclease ACIFE_RS09210 PF00476 DNA polymerase family A ACIFE_RS09260 PF02540 NAD synthase ACIFE_RS09260 PF00795 Carbon-nitrogen hydrolase ACIFE_RS09320 PF01464 Transglycosylase SLT domain ACIFE_RS09350 PF08774 VRR-NUC domain ACIFE_RS09350 PF04851 Type III restriction enzyme, res subunit ACIFE_RS09355 PF18273 Type III R-M EcoP15I C-terminal domain ACIFE_RS09355 PF01555 DNA methylase ACIFE_RS09375 PF00176 SNF2 family N-terminal domain ACIFE_RS09375 PF00271 Helicase conserved C-terminal domain ACIFE_RS09380 PF01926 50S ribosome-binding GTPase ACIFE_RS09390 PF00216 Bacterial DNA-binding protein ACIFE_RS09405 PF00216 Bacterial DNA-binding protein ACIFE_RS09410 PF00216 Bacterial DNA-binding protein ACIFE_RS09420 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ACIFE_RS09420 PF01619 Proline dehydrogenase ACIFE_RS09420 PF00171 Aldehyde dehydrogenase family ACIFE_RS09420 PF14850 DNA-binding domain of Proline dehydrogenase ACIFE_RS09435 PF07963 Prokaryotic N-terminal methylation motif ACIFE_RS09435 PF00114 Pilin (bacterial filament) ACIFE_RS09440 PF00482 Type II secretion system (T2SS), protein F ACIFE_RS09450 PF07282 Putative transposase DNA-binding domain ACIFE_RS09450 PF12323 Helix-turn-helix domain ACIFE_RS09450 PF01385 Probable transposase ACIFE_RS09470 PF00114 Pilin (bacterial filament) ACIFE_RS09470 PF07963 Prokaryotic N-terminal methylation motif ACIFE_RS09480 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ACIFE_RS09480 PF13542 Helix-turn-helix domain of transposase family ISL3 ACIFE_RS09480 PF01610 Transposase ACIFE_RS09535 PF02534 Type IV secretory system Conjugative DNA transfer ACIFE_RS09550 PF02195 ParB-like nuclease domain ACIFE_RS09560 PF01507 Phosphoadenosine phosphosulfate reductase family ACIFE_RS09560 PF11922 Domain of unknown function (DUF3440) ACIFE_RS09580 PF00877 NlpC/P60 family ACIFE_RS09590 PF01979 Amidohydrolase family ACIFE_RS09600 PF13419 Haloacid dehalogenase-like hydrolase ACIFE_RS09610 PF00155 Aminotransferase class I and II ACIFE_RS09615 PF00132 Bacterial transferase hexapeptide (six repeats) ACIFE_RS09615 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ACIFE_RS09615 PF14602 Hexapeptide repeat of succinyl-transferase ACIFE_RS09620 PF07687 Peptidase dimerisation domain ACIFE_RS09620 PF01546 Peptidase family M20/M25/M40 ACIFE_RS09625 PF05036 Sporulation related domain ACIFE_RS09625 PF03330 Lytic transglycolase ACIFE_RS09635 PF02896 PEP-utilising enzyme, TIM barrel domain ACIFE_RS09635 PF00391 PEP-utilising enzyme, mobile domain ACIFE_RS09635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ACIFE_RS09640 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ACIFE_RS09640 PF01676 Metalloenzyme superfamily ACIFE_RS09645 PF00364 Biotin-requiring enzyme ACIFE_RS09645 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACIFE_RS09645 PF02817 e3 binding domain ACIFE_RS09650 PF00871 Acetokinase family ACIFE_RS09655 PF00083 Sugar (and other) transporter ACIFE_RS09660 PF01515 Phosphate acetyl/butaryl transferase ACIFE_RS09665 PF00294 pfkB family carbohydrate kinase ACIFE_RS09675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS09675 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS09685 PF00391 PEP-utilising enzyme, mobile domain ACIFE_RS09685 PF02887 Pyruvate kinase, alpha/beta domain ACIFE_RS09685 PF00224 Pyruvate kinase, barrel domain ACIFE_RS09690 PF11897 Protein of unknown function (DUF3417) ACIFE_RS09690 PF00343 Carbohydrate phosphorylase ACIFE_RS09700 PF00156 Phosphoribosyl transferase domain ACIFE_RS09700 PF05139 Erythromycin esterase ACIFE_RS09710 PF01738 Dienelactone hydrolase family ACIFE_RS09710 PF00156 Phosphoribosyl transferase domain ACIFE_RS09725 PF00849 RNA pseudouridylate synthase ACIFE_RS09725 PF01479 S4 domain ACIFE_RS09730 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS09735 PF04079 Segregation and condensation complex subunit ScpB ACIFE_RS09740 PF02616 Segregation and condensation protein ScpA ACIFE_RS09745 PF00579 tRNA synthetases class I (W and Y) ACIFE_RS09750 PF02163 Peptidase family M50 ACIFE_RS09755 PF01300 Telomere recombination ACIFE_RS09775 PF12794 Mechanosensitive ion channel inner membrane domain 1 ACIFE_RS09775 PF12795 Mechanosensitive ion channel porin domain ACIFE_RS09775 PF00924 Mechanosensitive ion channel ACIFE_RS09780 PF00696 Amino acid kinase family ACIFE_RS09780 PF01472 PUA domain ACIFE_RS09785 PF00958 GMP synthase C terminal domain ACIFE_RS09785 PF00117 Glutamine amidotransferase class-I ACIFE_RS09785 PF02540 NAD synthase ACIFE_RS09790 PF00478 IMP dehydrogenase / GMP reductase domain ACIFE_RS09790 PF00571 CBS domain ACIFE_RS09795 PF00535 Glycosyl transferase family 2 ACIFE_RS09800 PF12627 Probable RNA and SrmB- binding site of polymerase A ACIFE_RS09800 PF12626 Polymerase A arginine-rich C-terminus ACIFE_RS09800 PF01743 Poly A polymerase head domain ACIFE_RS09805 PF12627 Probable RNA and SrmB- binding site of polymerase A ACIFE_RS09805 PF02272 DHHA1 domain ACIFE_RS09805 PF01368 DHH family ACIFE_RS09805 PF00571 CBS domain ACIFE_RS09805 PF01743 Poly A polymerase head domain ACIFE_RS09810 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACIFE_RS09815 PF01712 Deoxynucleoside kinase ACIFE_RS09820 PF02548 Ketopantoate hydroxymethyltransferase ACIFE_RS09825 PF02569 Pantoate-beta-alanine ligase ACIFE_RS09830 PF01565 FAD binding domain ACIFE_RS09830 PF02913 FAD linked oxidases, C-terminal domain ACIFE_RS09840 PF00488 MutS domain V ACIFE_RS09840 PF01713 Smr domain ACIFE_RS09855 PF01027 Inhibitor of apoptosis-promoting Bax1 ACIFE_RS09860 PF05192 MutS domain III ACIFE_RS09860 PF05190 MutS family domain IV ACIFE_RS09860 PF01624 MutS domain I ACIFE_RS09860 PF00488 MutS domain V ACIFE_RS09860 PF05188 MutS domain II ACIFE_RS09895 PF03466 LysR substrate binding domain ACIFE_RS09895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS09900 PF07690 Major Facilitator Superfamily ACIFE_RS09905 PF02321 Outer membrane efflux protein ACIFE_RS09910 PF00529 HlyD membrane-fusion protein of T1SS ACIFE_RS09910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS09915 PF00042 Globin ACIFE_RS09915 PF00970 Oxidoreductase FAD-binding domain ACIFE_RS09915 PF00175 Oxidoreductase NAD-binding domain ACIFE_RS09920 PF00175 Oxidoreductase NAD-binding domain ACIFE_RS09920 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIFE_RS09920 PF00970 Oxidoreductase FAD-binding domain ACIFE_RS09935 PF01597 Glycine cleavage H-protein ACIFE_RS09940 PF04343 Protein of unknown function, DUF488 ACIFE_RS09945 PF13545 Crp-like helix-turn-helix domain ACIFE_RS09945 PF00027 Cyclic nucleotide-binding domain ACIFE_RS09950 PF00005 ABC transporter ACIFE_RS09955 PF07690 Major Facilitator Superfamily ACIFE_RS09965 PF18267 Rubredoxin NAD+ reductase C-terminal domain ACIFE_RS09965 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS09965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACIFE_RS09965 PF04324 BFD-like [2Fe-2S] binding domain ACIFE_RS09965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACIFE_RS09970 PF00355 Rieske [2Fe-2S] domain ACIFE_RS09975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACIFE_RS09975 PF00384 Molybdopterin oxidoreductase ACIFE_RS09975 PF01568 Molydopterin dinucleotide binding domain ACIFE_RS09980 PF02885 Glycosyl transferase family, helical bundle domain ACIFE_RS09985 PF10414 Sirohaem synthase dimerisation region ACIFE_RS09985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIFE_RS09995 PF08376 Nitrate and nitrite sensing ACIFE_RS09995 PF03861 ANTAR domain ACIFE_RS10020 PF13396 Phospholipase_D-nuclease N-terminal ACIFE_RS10020 PF13091 PLD-like domain ACIFE_RS10025 PF00563 EAL domain ACIFE_RS10025 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS10025 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS10030 PF06745 KaiC ACIFE_RS10055 PF00230 Major intrinsic protein ACIFE_RS10070 PF01255 Putative undecaprenyl diphosphate synthase ACIFE_RS10150 PF00654 Voltage gated chloride channel ACIFE_RS10155 PF01381 Helix-turn-helix ACIFE_RS10160 PF17954 Quercetinase C-terminal cupin domain ACIFE_RS10160 PF02678 Pirin ACIFE_RS10165 PF01464 Transglycosylase SLT domain ACIFE_RS10175 PF00521 DNA gyrase/topoisomerase IV, subunit A ACIFE_RS10180 PF01751 Toprim domain ACIFE_RS10180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS10180 PF00204 DNA gyrase B ACIFE_RS10180 PF00986 DNA gyrase B subunit, carboxyl terminus ACIFE_RS10190 PF00873 AcrB/AcrD/AcrF family ACIFE_RS10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS10205 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS10205 PF08521 Two-component sensor kinase N-terminal ACIFE_RS10210 PF00072 Response regulator receiver domain ACIFE_RS10210 PF00486 Transcriptional regulatory protein, C terminal ACIFE_RS10235 PF00486 Transcriptional regulatory protein, C terminal ACIFE_RS10235 PF00072 Response regulator receiver domain ACIFE_RS10240 PF00672 HAMP domain ACIFE_RS10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS10240 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS10255 PF00873 AcrB/AcrD/AcrF family ACIFE_RS10285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS10290 PF00873 AcrB/AcrD/AcrF family ACIFE_RS10295 PF02887 Pyruvate kinase, alpha/beta domain ACIFE_RS10295 PF00224 Pyruvate kinase, barrel domain ACIFE_RS10295 PF02887 Pyruvate kinase, alpha/beta domain ACIFE_RS10295 PF00224 Pyruvate kinase, barrel domain ACIFE_RS10305 PF02666 Phosphatidylserine decarboxylase ACIFE_RS10310 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACIFE_RS10310 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACIFE_RS10315 PF10369 Small subunit of acetolactate synthase ACIFE_RS10320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACIFE_RS10320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACIFE_RS10320 PF00205 Thiamine pyrophosphate enzyme, central domain ACIFE_RS10325 PF01713 Smr domain ACIFE_RS10325 PF00488 MutS domain V ACIFE_RS10335 PF01894 Uncharacterised protein family UPF0047 ACIFE_RS10340 PF14437 MafB19-like deaminase ACIFE_RS10345 PF11104 Type IV pilus assembly protein PilM; ACIFE_RS10365 PF07660 Secretin and TonB N terminus short domain ACIFE_RS10365 PF00263 Bacterial type II and III secretion system protein ACIFE_RS10365 PF03958 Bacterial type II/III secretion system short domain ACIFE_RS10365 PF11741 AMIN domain ACIFE_RS10370 PF01202 Shikimate kinase ACIFE_RS10375 PF01761 3-dehydroquinate synthase ACIFE_RS10380 PF02511 Thymidylate synthase complementing protein ACIFE_RS10385 PF13286 Phosphohydrolase-associated domain ACIFE_RS10385 PF01966 HD domain ACIFE_RS10390 PF01493 GXGXG motif ACIFE_RS10390 PF01645 Conserved region in glutamate synthase ACIFE_RS10390 PF04898 Glutamate synthase central domain ACIFE_RS10390 PF00310 Glutamine amidotransferases class-II ACIFE_RS10395 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS10395 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ACIFE_RS10400 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACIFE_RS10405 PF01553 Acyltransferase ACIFE_RS10430 PF00585 C-terminal regulatory domain of Threonine dehydratase ACIFE_RS10430 PF00291 Pyridoxal-phosphate dependent enzyme ACIFE_RS10435 PF01266 FAD dependent oxidoreductase ACIFE_RS10455 PF01555 DNA methylase ACIFE_RS10480 PF02355 Protein export membrane protein ACIFE_RS10480 PF07549 SecD/SecF GG Motif ACIFE_RS10485 PF07549 SecD/SecF GG Motif ACIFE_RS10485 PF13721 SecD export protein N-terminal TM region ACIFE_RS10485 PF02355 Protein export membrane protein ACIFE_RS10490 PF02699 Preprotein translocase subunit ACIFE_RS10495 PF01702 Queuine tRNA-ribosyltransferase ACIFE_RS10500 PF02547 Queuosine biosynthesis protein ACIFE_RS10505 PF00571 CBS domain ACIFE_RS10505 PF03471 Transporter associated domain ACIFE_RS10505 PF01595 Cyclin M transmembrane N-terminal domain ACIFE_RS10515 PF01053 Cys/Met metabolism PLP-dependent enzyme ACIFE_RS10520 PF13537 Glutamine amidotransferase domain ACIFE_RS10520 PF00156 Phosphoribosyl transferase domain ACIFE_RS10530 PF08245 Mur ligase middle domain ACIFE_RS10530 PF02875 Mur ligase family, glutamate ligase domain ACIFE_RS10535 PF01039 Carboxyl transferase domain ACIFE_RS10535 PF17848 Acetyl-coA carboxylase zinc finger domain ACIFE_RS10540 PF00290 Tryptophan synthase alpha chain ACIFE_RS10545 PF00291 Pyridoxal-phosphate dependent enzyme ACIFE_RS10550 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACIFE_RS10555 PF01416 tRNA pseudouridine synthase ACIFE_RS10565 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACIFE_RS10565 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACIFE_RS10570 PF00180 Isocitrate/isopropylmalate dehydrogenase ACIFE_RS10580 PF12804 MobA-like NTP transferase domain ACIFE_RS10585 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ACIFE_RS10590 PF03453 MoeA N-terminal region (domain I and II) ACIFE_RS10590 PF00994 Probable molybdopterin binding domain ACIFE_RS10590 PF03454 MoeA C-terminal region (domain IV) ACIFE_RS10595 PF13091 PLD-like domain ACIFE_RS10600 PF00753 Metallo-beta-lactamase superfamily ACIFE_RS10605 PF01871 AMMECR1 ACIFE_RS10610 PF01875 Memo-like protein ACIFE_RS10615 PF02040 Arsenical pump membrane protein ACIFE_RS10630 PF01594 AI-2E family transporter ACIFE_RS10635 PF01593 Flavin containing amine oxidoreductase ACIFE_RS10645 PF13749 Putative ATP-dependent DNA helicase recG C-terminal ACIFE_RS10645 PF17191 RecG wedge domain ACIFE_RS10645 PF00270 DEAD/DEAH box helicase ACIFE_RS10655 PF01042 Endoribonuclease L-PSP ACIFE_RS10660 PF13291 ACT domain ACIFE_RS10660 PF02824 TGS domain ACIFE_RS10660 PF04607 Region found in RelA / SpoT proteins ACIFE_RS10665 PF01192 RNA polymerase Rpb6 ACIFE_RS10670 PF00625 Guanylate kinase ACIFE_RS10675 PF03755 YicC-like family, N-terminal region ACIFE_RS10675 PF08340 Domain of unknown function (DUF1732) ACIFE_RS10695 PF07728 AAA domain (dynein-related subfamily) ACIFE_RS10695 PF08406 CbbQ/NirQ/NorQ C-terminal ACIFE_RS10700 PF00101 Ribulose bisphosphate carboxylase, small chain ACIFE_RS10705 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ACIFE_RS10705 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ACIFE_RS10710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACIFE_RS10715 PF00005 ABC transporter ACIFE_RS10730 PF00216 Bacterial DNA-binding protein ACIFE_RS10755 PF01850 PIN domain ACIFE_RS10760 PF04471 Restriction endonuclease ACIFE_RS10760 PF14338 Mrr N-terminal domain ACIFE_RS10770 PF02384 N-6 DNA Methylase ACIFE_RS10770 PF12161 HsdM N-terminal domain ACIFE_RS10795 PF05016 ParE toxin of type II toxin-antitoxin system, parDE ACIFE_RS10800 PF11867 Domain of unknown function (DUF3387) ACIFE_RS10800 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACIFE_RS10800 PF18766 SWI2/SNF2 ATPase ACIFE_RS10820 PF00425 chorismate binding enzyme ACIFE_RS10820 PF04715 Anthranilate synthase component I, N terminal region ACIFE_RS10825 PF02321 Outer membrane efflux protein ACIFE_RS10830 PF03023 Lipid II flippase MurJ ACIFE_RS10840 PF06574 FAD synthetase ACIFE_RS10840 PF01687 Riboflavin kinase ACIFE_RS10845 PF08264 Anticodon-binding domain of tRNA ACIFE_RS10845 PF06827 Zinc finger found in FPG and IleRS ACIFE_RS10845 PF00133 tRNA synthetases class I (I, L, M and V) ACIFE_RS10850 PF01252 Signal peptidase (SPase) II ACIFE_RS10860 PF00106 short chain dehydrogenase ACIFE_RS10870 PF00005 ABC transporter ACIFE_RS10870 PF06472 ABC transporter transmembrane region 2 ACIFE_RS10880 PF00795 Carbon-nitrogen hydrolase ACIFE_RS10890 PF08335 GlnD PII-uridylyltransferase ACIFE_RS10890 PF03710 Glutamate-ammonia ligase adenylyltransferase ACIFE_RS10895 PF01063 Amino-transferase class IV ACIFE_RS10905 PF02683 Cytochrome C biogenesis protein transmembrane region ACIFE_RS10905 PF11412 Disulphide bond corrector protein DsbC ACIFE_RS10915 PF00166 Chaperonin 10 Kd subunit ACIFE_RS10920 PF00118 TCP-1/cpn60 chaperonin family ACIFE_RS10935 PF00156 Phosphoribosyl transferase domain ACIFE_RS10940 PF01747 ATP-sulfurylase ACIFE_RS10940 PF14306 PUA-like domain ACIFE_RS10950 PF09278 MerR, DNA binding ACIFE_RS10950 PF00376 MerR family regulatory protein ACIFE_RS10955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS10955 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS10955 PF00403 Heavy-metal-associated domain ACIFE_RS10960 PF00384 Molybdopterin oxidoreductase ACIFE_RS10970 PF02634 FdhD/NarQ family ACIFE_RS10975 PF00107 Zinc-binding dehydrogenase ACIFE_RS10975 PF08240 Alcohol dehydrogenase GroES-like domain ACIFE_RS11000 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACIFE_RS11000 PF01348 Type II intron maturase ACIFE_RS11005 PF01527 Transposase ACIFE_RS11010 PF13333 Integrase core domain ACIFE_RS11010 PF00665 Integrase core domain ACIFE_RS11010 PF13276 HTH-like domain ACIFE_RS11035 PF02861 Clp amino terminal domain, pathogenicity island component ACIFE_RS11035 PF10431 C-terminal, D2-small domain, of ClpB protein ACIFE_RS11035 PF00004 ATPase family associated with various cellular activities (AAA) ACIFE_RS11035 PF07724 AAA domain (Cdc48 subfamily) ACIFE_RS11035 PF17871 AAA lid domain ACIFE_RS11040 PF04055 Radical SAM superfamily ACIFE_RS11060 PF00665 Integrase core domain ACIFE_RS11065 PF01695 IstB-like ATP binding protein ACIFE_RS11075 PF01610 Transposase ACIFE_RS11075 PF13542 Helix-turn-helix domain of transposase family ISL3 ACIFE_RS11075 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ACIFE_RS11100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACIFE_RS11150 PF00589 Phage integrase family ACIFE_RS11155 PF00589 Phage integrase family ACIFE_RS11155 PF02899 Phage integrase, N-terminal SAM-like domain ACIFE_RS11170 PF08240 Alcohol dehydrogenase GroES-like domain ACIFE_RS11170 PF00107 Zinc-binding dehydrogenase ACIFE_RS11180 PF02633 Creatinine amidohydrolase ACIFE_RS11185 PF00120 Glutamine synthetase, catalytic domain ACIFE_RS11190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACIFE_RS11195 PF01548 Transposase ACIFE_RS11195 PF02371 Transposase IS116/IS110/IS902 family ACIFE_RS11210 PF00355 Rieske [2Fe-2S] domain ACIFE_RS11210 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ACIFE_RS11215 PF01548 Transposase ACIFE_RS11215 PF02371 Transposase IS116/IS110/IS902 family ACIFE_RS11250 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS11260 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ACIFE_RS11270 PF02371 Transposase IS116/IS110/IS902 family ACIFE_RS11270 PF01548 Transposase ACIFE_RS11295 PF13476 AAA domain ACIFE_RS11300 PF00149 Calcineurin-like phosphoesterase ACIFE_RS11300 PF12320 Type 5 capsule protein repressor C-terminal domain ACIFE_RS11325 PF04326 Putative DNA-binding domain ACIFE_RS11335 PF02463 RecF/RecN/SMC N terminal domain ACIFE_RS11335 PF06470 SMC proteins Flexible Hinge Domain ACIFE_RS11365 PF13817 IS66 C-terminal element ACIFE_RS11365 PF03050 Transposase IS66 family ACIFE_RS11365 PF13007 Transposase C of IS166 homeodomain ACIFE_RS11365 PF13005 zinc-finger binding domain of transposase IS66 ACIFE_RS11370 PF00589 Phage integrase family ACIFE_RS11380 PF04546 Sigma-70, non-essential region ACIFE_RS11380 PF03979 Sigma-70 factor, region 1.1 ACIFE_RS11380 PF04545 Sigma-70, region 4 ACIFE_RS11380 PF04539 Sigma-70 region 3 ACIFE_RS11380 PF04542 Sigma-70 region 2 ACIFE_RS11380 PF00140 Sigma-70 factor, region 1.2 ACIFE_RS11385 PF08278 DNA primase DnaG DnaB-binding ACIFE_RS11385 PF10410 DnaB-helicase binding domain of primase ACIFE_RS11385 PF01807 CHC2 zinc finger ACIFE_RS11385 PF08275 DNA primase catalytic core, N-terminal domain ACIFE_RS11390 PF01713 Smr domain ACIFE_RS11390 PF00488 MutS domain V ACIFE_RS11400 PF01165 Ribosomal protein S21 ACIFE_RS11405 PF04542 Sigma-70 region 2 ACIFE_RS11405 PF04539 Sigma-70 region 3 ACIFE_RS11405 PF00140 Sigma-70 factor, region 1.2 ACIFE_RS11405 PF04545 Sigma-70, region 4 ACIFE_RS11410 PF01725 Ham1 family ACIFE_RS11415 PF03725 3' exoribonuclease family, domain 2 ACIFE_RS11415 PF01138 3' exoribonuclease family, domain 1 ACIFE_RS11430 PF04055 Radical SAM superfamily ACIFE_RS11430 PF06969 HemN C-terminal domain ACIFE_RS11440 PF01479 S4 domain ACIFE_RS11440 PF00849 RNA pseudouridylate synthase ACIFE_RS11445 PF07690 Major Facilitator Superfamily ACIFE_RS11450 PF00768 D-alanyl-D-alanine carboxypeptidase ACIFE_RS11450 PF07943 Penicillin-binding protein 5, C-terminal domain ACIFE_RS11460 PF08241 Methyltransferase domain ACIFE_RS11470 PF00589 Phage integrase family ACIFE_RS11475 PF01850 PIN domain ACIFE_RS11495 PF04851 Type III restriction enzyme, res subunit ACIFE_RS11495 PF00271 Helicase conserved C-terminal domain ACIFE_RS11495 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACIFE_RS11495 PF08463 EcoEI R protein C-terminal ACIFE_RS11505 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ACIFE_RS11505 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACIFE_RS11505 PF02769 AIR synthase related protein, C-terminal domain ACIFE_RS11510 PF01259 SAICAR synthetase ACIFE_RS11515 PF10397 Adenylosuccinate lyase C-terminus ACIFE_RS11515 PF00206 Lyase ACIFE_RS11525 PF00701 Dihydrodipicolinate synthetase family ACIFE_RS11535 PF03006 Haemolysin-III related ACIFE_RS11540 PF11741 AMIN domain ACIFE_RS11540 PF01520 N-acetylmuramoyl-L-alanine amidase ACIFE_RS11545 PF00085 Thioredoxin ACIFE_RS11550 PF00462 Glutaredoxin ACIFE_RS11555 PF00581 Rhodanese-like domain ACIFE_RS11565 PF00873 AcrB/AcrD/AcrF family ACIFE_RS11570 PF13533 Biotin-lipoyl like ACIFE_RS11580 PF01022 Bacterial regulatory protein, arsR family ACIFE_RS11590 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACIFE_RS11605 PF00899 ThiF family ACIFE_RS11610 PF01026 TatD related DNase ACIFE_RS11615 PF01494 FAD binding domain ACIFE_RS11620 PF01494 FAD binding domain ACIFE_RS11625 PF04380 Membrane fusogenic activity ACIFE_RS11630 PF01078 Magnesium chelatase, subunit ChlI ACIFE_RS11630 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACIFE_RS11635 PF06628 Catalase-related immune-responsive ACIFE_RS11635 PF00199 Catalase ACIFE_RS11645 PF16658 Class II release factor RF3, C-terminal domain ACIFE_RS11645 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS11645 PF03144 Elongation factor Tu domain 2 ACIFE_RS11655 PF00814 Glycoprotease family ACIFE_RS11660 PF13307 Helicase C-terminal domain ACIFE_RS11660 PF04851 Type III restriction enzyme, res subunit ACIFE_RS11680 PF00877 NlpC/P60 family ACIFE_RS11700 PF02421 Ferrous iron transport protein B ACIFE_RS11700 PF17910 FeoB cytosolic helical domain ACIFE_RS11700 PF07670 Nucleoside recognition ACIFE_RS11700 PF07664 Ferrous iron transport protein B C terminus ACIFE_RS11710 PF00795 Carbon-nitrogen hydrolase ACIFE_RS11715 PF07722 Peptidase C26 ACIFE_RS11720 PF09335 SNARE associated Golgi protein ACIFE_RS11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS11735 PF03466 LysR substrate binding domain ACIFE_RS11750 PF00850 Histone deacetylase domain ACIFE_RS11760 PF08406 CbbQ/NirQ/NorQ C-terminal ACIFE_RS11760 PF07728 AAA domain (dynein-related subfamily) ACIFE_RS11805 PF03099 Biotin/lipoate A/B protein ligase family ACIFE_RS11815 PF01597 Glycine cleavage H-protein ACIFE_RS11825 PF01597 Glycine cleavage H-protein ACIFE_RS11830 PF02754 Cysteine-rich domain ACIFE_RS11845 PF01593 Flavin containing amine oxidoreductase ACIFE_RS11860 PF13686 DsrE/DsrF/DrsH-like family ACIFE_RS11865 PF01206 Sulfurtransferase TusA ACIFE_RS11870 PF00581 Rhodanese-like domain ACIFE_RS11875 PF04055 Radical SAM superfamily ACIFE_RS11875 PF06463 Molybdenum Cofactor Synthesis C ACIFE_RS11885 PF13247 4Fe-4S dicluster domain ACIFE_RS11885 PF12800 4Fe-4S binding domain ACIFE_RS11890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACIFE_RS11890 PF00384 Molybdopterin oxidoreductase ACIFE_RS11890 PF01568 Molydopterin dinucleotide binding domain ACIFE_RS11900 PF01967 MoaC family ACIFE_RS11910 PF00989 PAS fold ACIFE_RS11910 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS11910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS11915 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS11915 PF00072 Response regulator receiver domain ACIFE_RS11915 PF00158 Sigma-54 interaction domain ACIFE_RS11935 PF03625 Domain of unknown function DUF302 ACIFE_RS11940 PF00149 Calcineurin-like phosphoesterase ACIFE_RS11940 PF02872 5'-nucleotidase, C-terminal domain ACIFE_RS11950 PF04085 rod shape-determining protein MreC ACIFE_RS11965 PF01098 Cell cycle protein ACIFE_RS11970 PF07943 Penicillin-binding protein 5, C-terminal domain ACIFE_RS11970 PF00768 D-alanyl-D-alanine carboxypeptidase ACIFE_RS11980 PF03099 Biotin/lipoate A/B protein ligase family ACIFE_RS11985 PF04055 Radical SAM superfamily ACIFE_RS11985 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ACIFE_RS11990 PF02698 DUF218 domain ACIFE_RS12030 PF02091 Glycyl-tRNA synthetase alpha subunit ACIFE_RS12035 PF02092 Glycyl-tRNA synthetase beta subunit ACIFE_RS12045 PF01553 Acyltransferase ACIFE_RS12050 PF08443 RimK-like ATP-grasp domain ACIFE_RS12050 PF18030 RimK PreATP-grasp domain ACIFE_RS12070 PF01329 Pterin 4 alpha carbinolamine dehydratase ACIFE_RS12075 PF02677 Epoxyqueuosine reductase QueH ACIFE_RS12080 PF01510 N-acetylmuramoyl-L-alanine amidase ACIFE_RS12095 PF00682 HMGL-like ACIFE_RS12095 PF08502 LeuA allosteric (dimerisation) domain ACIFE_RS12110 PF02661 Fic/DOC family ACIFE_RS12130 PF00216 Bacterial DNA-binding protein ACIFE_RS12135 PF03484 tRNA synthetase B5 domain ACIFE_RS12135 PF03147 Ferredoxin-fold anticodon binding domain ACIFE_RS12135 PF01588 Putative tRNA binding domain ACIFE_RS12135 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACIFE_RS12135 PF03483 B3/4 domain ACIFE_RS12140 PF01409 tRNA synthetases class II core domain (F) ACIFE_RS12140 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACIFE_RS12145 PF00453 Ribosomal protein L20 ACIFE_RS12150 PF01632 Ribosomal protein L35 ACIFE_RS12155 PF05198 Translation initiation factor IF-3, N-terminal domain ACIFE_RS12155 PF00707 Translation initiation factor IF-3, C-terminal domain ACIFE_RS12160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACIFE_RS12160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIFE_RS12160 PF02824 TGS domain ACIFE_RS12160 PF03129 Anticodon binding domain ACIFE_RS12175 PF00361 Proton-conducting membrane transporter ACIFE_RS12180 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ACIFE_RS12180 PF00361 Proton-conducting membrane transporter ACIFE_RS12185 PF00361 Proton-conducting membrane transporter ACIFE_RS12185 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIFE_RS12190 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ACIFE_RS12195 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ACIFE_RS12200 PF12838 4Fe-4S dicluster domain ACIFE_RS12205 PF00146 NADH dehydrogenase ACIFE_RS12210 PF00384 Molybdopterin oxidoreductase ACIFE_RS12210 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ACIFE_RS12210 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ACIFE_RS12215 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ACIFE_RS12215 PF10531 SLBB domain ACIFE_RS12215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACIFE_RS12225 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ACIFE_RS12230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ACIFE_RS12235 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ACIFE_RS12240 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ACIFE_RS12250 PF03840 Preprotein translocase SecG subunit ACIFE_RS12255 PF00121 Triosephosphate isomerase ACIFE_RS12260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACIFE_RS12260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACIFE_RS12260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACIFE_RS12260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACIFE_RS12265 PF00809 Pterin binding enzyme ACIFE_RS12270 PF01434 Peptidase family M41 ACIFE_RS12270 PF00004 ATPase family associated with various cellular activities (AAA) ACIFE_RS12270 PF06480 FtsH Extracellular ACIFE_RS12270 PF17862 AAA+ lid domain ACIFE_RS12275 PF01523 Putative modulator of DNA gyrase ACIFE_RS12280 PF00317 Ribonucleotide reductase, all-alpha domain ACIFE_RS12280 PF02867 Ribonucleotide reductase, barrel domain ACIFE_RS12280 PF03477 ATP cone domain ACIFE_RS12285 PF00268 Ribonucleotide reductase, small chain ACIFE_RS12370 PF00892 EamA-like transporter family ACIFE_RS12405 PF00510 Cytochrome c oxidase subunit III ACIFE_RS12410 PF00115 Cytochrome C and Quinol oxidase polypeptide I ACIFE_RS12415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ACIFE_RS12415 PF06481 COX Aromatic Rich Motif ACIFE_RS12435 PF13360 PQQ-like domain ACIFE_RS12435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ACIFE_RS12435 PF01011 PQQ enzyme repeat ACIFE_RS12460 PF00216 Bacterial DNA-binding protein ACIFE_RS12490 PF00282 Pyridoxal-dependent decarboxylase conserved domain ACIFE_RS12500 PF13396 Phospholipase_D-nuclease N-terminal ACIFE_RS12500 PF13091 PLD-like domain ACIFE_RS12515 PF03050 Transposase IS66 family ACIFE_RS12515 PF13817 IS66 C-terminal element ACIFE_RS12515 PF13007 Transposase C of IS166 homeodomain ACIFE_RS12515 PF13005 zinc-finger binding domain of transposase IS66 ACIFE_RS12520 PF02371 Transposase IS116/IS110/IS902 family ACIFE_RS12520 PF01548 Transposase ACIFE_RS12525 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS12540 PF00175 Oxidoreductase NAD-binding domain ACIFE_RS12540 PF00258 Flavodoxin ACIFE_RS12540 PF00667 FAD binding domain ACIFE_RS12545 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACIFE_RS12545 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACIFE_RS12550 PF01507 Phosphoadenosine phosphosulfate reductase family ACIFE_RS12555 PF01507 Phosphoadenosine phosphosulfate reductase family ACIFE_RS12560 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS12565 PF14824 Sirohaem biosynthesis protein central ACIFE_RS12565 PF10414 Sirohaem synthase dimerisation region ACIFE_RS12565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACIFE_RS12590 PF13840 ACT domain ACIFE_RS12590 PF00696 Amino acid kinase family ACIFE_RS12590 PF01842 ACT domain ACIFE_RS12595 PF00202 Aminotransferase class-III ACIFE_RS12600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIFE_RS12600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIFE_RS12605 PF00764 Arginosuccinate synthase ACIFE_RS12615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACIFE_RS12620 PF00929 Exonuclease ACIFE_RS12625 PF00075 RNase H ACIFE_RS12630 PF01209 ubiE/COQ5 methyltransferase family ACIFE_RS12635 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACIFE_RS12635 PF00753 Metallo-beta-lactamase superfamily ACIFE_RS12640 PF00675 Insulinase (Peptidase family M16) ACIFE_RS12640 PF05193 Peptidase M16 inactive domain ACIFE_RS12645 PF00013 KH domain ACIFE_RS12645 PF00575 S1 RNA binding domain ACIFE_RS12645 PF03725 3' exoribonuclease family, domain 2 ACIFE_RS12645 PF01138 3' exoribonuclease family, domain 1 ACIFE_RS12645 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACIFE_RS12650 PF00312 Ribosomal protein S15 ACIFE_RS12655 PF09157 Pseudouridine synthase II TruB, C-terminal ACIFE_RS12655 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACIFE_RS12655 PF16198 tRNA pseudouridylate synthase B C-terminal domain ACIFE_RS12660 PF02033 Ribosome-binding factor A ACIFE_RS12665 PF08364 Bacterial translation initiation factor IF-2 associated region ACIFE_RS12665 PF04760 Translation initiation factor IF-2, N-terminal region ACIFE_RS12665 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS12665 PF11987 Translation-initiation factor 2 ACIFE_RS12670 PF08529 NusA N-terminal domain ACIFE_RS12670 PF13184 NusA-like KH domain ACIFE_RS12675 PF02576 RimP N-terminal domain ACIFE_RS12675 PF17384 RimP C-terminal SH3 domain ACIFE_RS12710 PF03734 L,D-transpeptidase catalytic domain ACIFE_RS12710 PF01476 LysM domain ACIFE_RS12710 PF17969 L,D-transpeptidase C-terminal domain ACIFE_RS12720 PF02403 Seryl-tRNA synthetase N-terminal domain ACIFE_RS12720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACIFE_RS12725 PF00004 ATPase family associated with various cellular activities (AAA) ACIFE_RS12725 PF12002 MgsA AAA+ ATPase C terminal ACIFE_RS12725 PF16193 AAA C-terminal domain ACIFE_RS12735 PF03548 Outer membrane lipoprotein carrier protein LolA ACIFE_RS12740 PF17854 FtsK alpha domain ACIFE_RS12740 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ACIFE_RS12740 PF01580 FtsK/SpoIIIE family ACIFE_RS12740 PF09397 Ftsk gamma domain ACIFE_RS12745 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS12755 PF13411 MerR HTH family regulatory protein ACIFE_RS12760 PF01142 tRNA pseudouridine synthase D (TruD) ACIFE_RS12765 PF02542 YgbB family ACIFE_RS12770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACIFE_RS12775 PF17757 UvrB interaction domain ACIFE_RS12775 PF02559 CarD-like/TRCF domain ACIFE_RS12775 PF00271 Helicase conserved C-terminal domain ACIFE_RS12775 PF03461 TRCF domain ACIFE_RS12775 PF00270 DEAD/DEAH box helicase ACIFE_RS12780 PF01610 Transposase ACIFE_RS12780 PF13542 Helix-turn-helix domain of transposase family ISL3 ACIFE_RS12780 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ACIFE_RS12785 PF18429 Domain of unknown function (DUF5609) ACIFE_RS12790 PF00462 Glutaredoxin ACIFE_RS12790 PF08534 Redoxin ACIFE_RS12795 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS12795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS12800 PF01048 Phosphorylase superfamily ACIFE_RS12805 PF00156 Phosphoribosyl transferase domain ACIFE_RS12825 PF01569 PAP2 superfamily ACIFE_RS12835 PF04002 RadC-like JAB domain ACIFE_RS12840 PF02441 Flavoprotein ACIFE_RS12840 PF04127 DNA / pantothenate metabolism flavoprotein ACIFE_RS12845 PF00692 dUTPase ACIFE_RS12850 PF01196 Ribosomal protein L17 ACIFE_RS12855 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACIFE_RS12855 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACIFE_RS12855 PF01000 RNA polymerase Rpb3/RpoA insert domain ACIFE_RS12860 PF01479 S4 domain ACIFE_RS12860 PF00163 Ribosomal protein S4/S9 N-terminal domain ACIFE_RS12865 PF00411 Ribosomal protein S11 ACIFE_RS12870 PF00416 Ribosomal protein S13/S18 ACIFE_RS12875 PF01176 Translation initiation factor 1A / IF-1 ACIFE_RS12880 PF05191 Adenylate kinase, active site lid ACIFE_RS12885 PF00344 SecY translocase ACIFE_RS12890 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACIFE_RS12895 PF00327 Ribosomal protein L30p/L7e ACIFE_RS12900 PF00333 Ribosomal protein S5, N-terminal domain ACIFE_RS12900 PF03719 Ribosomal protein S5, C-terminal domain ACIFE_RS12905 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACIFE_RS12910 PF00347 Ribosomal protein L6 ACIFE_RS12915 PF00410 Ribosomal protein S8 ACIFE_RS12920 PF00281 Ribosomal protein L5 ACIFE_RS12920 PF00673 ribosomal L5P family C-terminus ACIFE_RS12925 PF00467 KOW motif ACIFE_RS12925 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACIFE_RS12930 PF00238 Ribosomal protein L14p/L23e ACIFE_RS12935 PF00366 Ribosomal protein S17 ACIFE_RS12940 PF00831 Ribosomal L29 protein ACIFE_RS12945 PF00252 Ribosomal protein L16p/L10e ACIFE_RS12950 PF07650 KH domain ACIFE_RS12950 PF00189 Ribosomal protein S3, C-terminal domain ACIFE_RS12955 PF00237 Ribosomal protein L22p/L17e ACIFE_RS12960 PF00181 Ribosomal Proteins L2, RNA binding domain ACIFE_RS12960 PF03947 Ribosomal Proteins L2, C-terminal domain ACIFE_RS12965 PF00276 Ribosomal protein L23 ACIFE_RS12970 PF00573 Ribosomal protein L4/L1 family ACIFE_RS12975 PF00297 Ribosomal protein L3 ACIFE_RS12980 PF00338 Ribosomal protein S10p/S20e ACIFE_RS12985 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS12985 PF03144 Elongation factor Tu domain 2 ACIFE_RS12985 PF03143 Elongation factor Tu C-terminal domain ACIFE_RS12990 PF14492 Elongation Factor G, domain II ACIFE_RS12990 PF00679 Elongation factor G C-terminus ACIFE_RS12990 PF03764 Elongation factor G, domain IV ACIFE_RS12990 PF03144 Elongation factor Tu domain 2 ACIFE_RS12990 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS12995 PF00177 Ribosomal protein S7p/S5e ACIFE_RS13000 PF00164 Ribosomal protein S12/S23 ACIFE_RS13005 PF04997 RNA polymerase Rpb1, domain 1 ACIFE_RS13005 PF00623 RNA polymerase Rpb1, domain 2 ACIFE_RS13005 PF04983 RNA polymerase Rpb1, domain 3 ACIFE_RS13005 PF04998 RNA polymerase Rpb1, domain 5 ACIFE_RS13005 PF05000 RNA polymerase Rpb1, domain 4 ACIFE_RS13010 PF04561 RNA polymerase Rpb2, domain 2 ACIFE_RS13010 PF04563 RNA polymerase beta subunit ACIFE_RS13010 PF04560 RNA polymerase Rpb2, domain 7 ACIFE_RS13010 PF04565 RNA polymerase Rpb2, domain 3 ACIFE_RS13010 PF10385 RNA polymerase beta subunit external 1 domain ACIFE_RS13010 PF00562 RNA polymerase Rpb2, domain 6 ACIFE_RS13015 PF16320 Ribosomal protein L7/L12 dimerisation domain ACIFE_RS13015 PF00542 Ribosomal protein L7/L12 C-terminal domain ACIFE_RS13020 PF00466 Ribosomal protein L10 ACIFE_RS13025 PF00687 Ribosomal protein L1p/L10e family ACIFE_RS13030 PF03946 Ribosomal protein L11, N-terminal domain ACIFE_RS13030 PF00298 Ribosomal protein L11, RNA binding domain ACIFE_RS13035 PF02357 Transcription termination factor nusG ACIFE_RS13035 PF00467 KOW motif ACIFE_RS13050 PF03144 Elongation factor Tu domain 2 ACIFE_RS13050 PF03143 Elongation factor Tu C-terminal domain ACIFE_RS13050 PF00009 Elongation factor Tu GTP binding domain ACIFE_RS13070 PF04972 BON domain ACIFE_RS13070 PF00691 OmpA family ACIFE_RS13075 PF03109 ABC1 family ACIFE_RS13095 PF01029 NusB family ACIFE_RS13100 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACIFE_RS13105 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACIFE_RS13105 PF00925 GTP cyclohydrolase II ACIFE_RS13110 PF00677 Lumazine binding domain ACIFE_RS13115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACIFE_RS13115 PF01872 RibD C-terminal domain ACIFE_RS13120 PF03477 ATP cone domain ACIFE_RS13125 PF00464 Serine hydroxymethyltransferase ACIFE_RS13135 PF00561 alpha/beta hydrolase fold ACIFE_RS13140 PF07021 Methionine biosynthesis protein MetW ACIFE_RS13140 PF00561 alpha/beta hydrolase fold ACIFE_RS13150 PF01209 ubiE/COQ5 methyltransferase family ACIFE_RS13155 PF08267 Cobalamin-independent synthase, N-terminal domain ACIFE_RS13155 PF01717 Cobalamin-independent synthase, Catalytic domain ACIFE_RS13160 PF00484 Carbonic anhydrase ACIFE_RS13165 PF01740 STAS domain ACIFE_RS13165 PF00916 Sulfate permease family ACIFE_RS13170 PF00829 Ribosomal prokaryotic L21 protein ACIFE_RS13175 PF01016 Ribosomal L27 protein ACIFE_RS13180 PF01926 50S ribosome-binding GTPase ACIFE_RS13180 PF01018 GTP1/OBG ACIFE_RS13185 PF00696 Amino acid kinase family ACIFE_RS13185 PF01472 PUA domain ACIFE_RS13190 PF01475 Ferric uptake regulator family ACIFE_RS13195 PF04355 SmpA / OmlA family ACIFE_RS13200 PF03364 Polyketide cyclase / dehydrase and lipid transport ACIFE_RS13205 PF13091 PLD-like domain ACIFE_RS13210 PF01668 SmpB protein ACIFE_RS13215 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ACIFE_RS13230 PF02222 ATP-grasp domain ACIFE_RS13230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ACIFE_RS13235 PF00731 AIR carboxylase ACIFE_RS13240 PF02390 Putative methyltransferase ACIFE_RS13250 PF00437 Type II/IV secretion system protein ACIFE_RS13255 PF00437 Type II/IV secretion system protein ACIFE_RS13260 PF01168 Alanine racemase, N-terminal domain ACIFE_RS13265 PF03807 NADP oxidoreductase coenzyme F420-dependent ACIFE_RS13265 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACIFE_RS13270 PF02325 YGGT family ACIFE_RS13275 PF02594 Uncharacterised ACR, YggU family COG1872 ACIFE_RS13280 PF06968 Biotin and Thiamin Synthesis associated domain ACIFE_RS13280 PF04055 Radical SAM superfamily ACIFE_RS13290 PF13533 Biotin-lipoyl like ACIFE_RS13295 PF00696 Amino acid kinase family ACIFE_RS13300 PF00440 Bacterial regulatory proteins, tetR family ACIFE_RS13320 PF00175 Oxidoreductase NAD-binding domain ACIFE_RS13320 PF00970 Oxidoreductase FAD-binding domain ACIFE_RS13320 PF00111 2Fe-2S iron-sulfur cluster binding domain ACIFE_RS13325 PF00929 Exonuclease ACIFE_RS13330 PF03649 Uncharacterised protein family (UPF0014) ACIFE_RS13335 PF04377 Arginine-tRNA-protein transferase, C terminus ACIFE_RS13335 PF04376 Arginine-tRNA-protein transferase, N terminus ACIFE_RS13340 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ACIFE_RS13345 PF01435 Peptidase family M48 ACIFE_RS13355 PF08241 Methyltransferase domain ACIFE_RS13360 PF00561 alpha/beta hydrolase fold ACIFE_RS13365 PF00155 Aminotransferase class I and II ACIFE_RS13370 PF00156 Phosphoribosyl transferase domain ACIFE_RS13375 PF00588 SpoU rRNA Methylase family ACIFE_RS13380 PF03781 Sulfatase-modifying factor enzyme 1 ACIFE_RS13380 PF12867 DinB superfamily ACIFE_RS13385 PF00155 Aminotransferase class I and II ACIFE_RS13390 PF03279 Bacterial lipid A biosynthesis acyltransferase ACIFE_RS13395 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACIFE_RS13405 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACIFE_RS13410 PF00535 Glycosyl transferase family 2 ACIFE_RS13425 PF00534 Glycosyl transferases group 1 ACIFE_RS13425 PF13439 Glycosyltransferase Family 4 ACIFE_RS13430 PF01522 Polysaccharide deacetylase ACIFE_RS13435 PF00535 Glycosyl transferase family 2 ACIFE_RS13440 PF00293 NUDIX domain ACIFE_RS13445 PF01960 ArgJ family ACIFE_RS13450 PF01043 SecA preprotein cross-linking domain ACIFE_RS13450 PF07517 SecA DEAD-like domain ACIFE_RS13450 PF07516 SecA Wing and Scaffold domain ACIFE_RS13450 PF02810 SEC-C motif ACIFE_RS13460 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACIFE_RS13465 PF00043 Glutathione S-transferase, C-terminal domain ACIFE_RS13465 PF02798 Glutathione S-transferase, N-terminal domain ACIFE_RS13470 PF00501 AMP-binding enzyme ACIFE_RS13475 PF01743 Poly A polymerase head domain ACIFE_RS13475 PF12627 Probable RNA and SrmB- binding site of polymerase A ACIFE_RS13475 PF13735 tRNA nucleotidyltransferase domain 2 putative ACIFE_RS13480 PF02381 MraZ protein, putative antitoxin-like ACIFE_RS13485 PF01795 MraW methylase family ACIFE_RS13495 PF03717 Penicillin-binding Protein dimerisation domain ACIFE_RS13495 PF00905 Penicillin binding protein transpeptidase domain ACIFE_RS13500 PF01225 Mur ligase family, catalytic domain ACIFE_RS13500 PF08245 Mur ligase middle domain ACIFE_RS13500 PF02875 Mur ligase family, glutamate ligase domain ACIFE_RS13505 PF01225 Mur ligase family, catalytic domain ACIFE_RS13505 PF08245 Mur ligase middle domain ACIFE_RS13505 PF02875 Mur ligase family, glutamate ligase domain ACIFE_RS13510 PF00953 Glycosyl transferase family 4 ACIFE_RS13510 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACIFE_RS13515 PF02875 Mur ligase family, glutamate ligase domain ACIFE_RS13515 PF08245 Mur ligase middle domain ACIFE_RS13520 PF01098 Cell cycle protein ACIFE_RS13525 PF03033 Glycosyltransferase family 28 N-terminal domain ACIFE_RS13525 PF04101 Glycosyltransferase family 28 C-terminal domain ACIFE_RS13530 PF02875 Mur ligase family, glutamate ligase domain ACIFE_RS13530 PF08245 Mur ligase middle domain ACIFE_RS13530 PF01225 Mur ligase family, catalytic domain ACIFE_RS13535 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACIFE_RS13535 PF01565 FAD binding domain ACIFE_RS13540 PF01820 D-ala D-ala ligase N-terminus ACIFE_RS13540 PF07478 D-ala D-ala ligase C-terminus ACIFE_RS13545 PF03799 Cell division protein FtsQ ACIFE_RS13545 PF08478 POTRA domain, FtsQ-type ACIFE_RS13550 PF02491 SHS2 domain inserted in FTSA ACIFE_RS13555 PF12327 FtsZ family, C-terminal domain ACIFE_RS13555 PF00091 Tubulin/FtsZ family, GTPase domain ACIFE_RS13570 PF01220 Dehydroquinase class II ACIFE_RS13575 PF00364 Biotin-requiring enzyme ACIFE_RS13580 PF02785 Biotin carboxylase C-terminal domain ACIFE_RS13580 PF00289 Biotin carboxylase, N-terminal domain ACIFE_RS13580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACIFE_RS13595 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS13600 PF01464 Transglycosylase SLT domain ACIFE_RS13600 PF01551 Peptidase family M23 ACIFE_RS13600 PF10145 Phage-related minor tail protein ACIFE_RS13605 PF04386 Stringent starvation protein B ACIFE_RS13610 PF01522 Polysaccharide deacetylase ACIFE_RS13610 PF03422 Carbohydrate binding module (family 6) ACIFE_RS13610 PF00457 Glycosyl hydrolases family 11 ACIFE_RS13615 PF04820 Tryptophan halogenase ACIFE_RS13640 PF00999 Sodium/hydrogen exchanger family ACIFE_RS13660 PF02801 Beta-ketoacyl synthase, C-terminal domain ACIFE_RS13660 PF00109 Beta-ketoacyl synthase, N-terminal domain ACIFE_RS13690 PF13193 AMP-binding enzyme C-terminal domain ACIFE_RS13690 PF00501 AMP-binding enzyme ACIFE_RS13705 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACIFE_RS13710 PF07072 Cell division protein ACIFE_RS13715 PF01121 Dephospho-CoA kinase ACIFE_RS13720 PF01478 Type IV leader peptidase family ACIFE_RS13720 PF06750 Bacterial Peptidase A24 N-terminal domain ACIFE_RS13725 PF02954 Bacterial regulatory protein, Fis family ACIFE_RS13725 PF00158 Sigma-54 interaction domain ACIFE_RS13725 PF00072 Response regulator receiver domain ACIFE_RS13730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS13730 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS13735 PF00437 Type II/IV secretion system protein ACIFE_RS13735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACIFE_RS13740 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ACIFE_RS13740 PF08501 Shikimate dehydrogenase substrate binding domain ACIFE_RS13745 PF03702 Anhydro-N-acetylmuramic acid kinase ACIFE_RS13750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACIFE_RS13755 PF00762 Ferrochelatase ACIFE_RS13765 PF00043 Glutathione S-transferase, C-terminal domain ACIFE_RS13765 PF13417 Glutathione S-transferase, N-terminal domain ACIFE_RS13770 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ACIFE_RS13780 PF03372 Endonuclease/Exonuclease/phosphatase family ACIFE_RS13785 PF05175 Methyltransferase small domain ACIFE_RS13790 PF07690 Major Facilitator Superfamily ACIFE_RS13795 PF12794 Mechanosensitive ion channel inner membrane domain 1 ACIFE_RS13795 PF12795 Mechanosensitive ion channel porin domain ACIFE_RS13795 PF00924 Mechanosensitive ion channel ACIFE_RS13800 PF03485 Arginyl tRNA synthetase N terminal domain ACIFE_RS13800 PF05746 DALR anticodon binding domain ACIFE_RS13800 PF00750 tRNA synthetases class I (R) ACIFE_RS13815 PF00398 Ribosomal RNA adenine dimethylase ACIFE_RS13825 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ACIFE_RS13830 PF01479 S4 domain ACIFE_RS13835 PF00005 ABC transporter ACIFE_RS13850 PF02470 MlaD protein ACIFE_RS13855 PF02405 Permease MlaE ACIFE_RS13860 PF00005 ABC transporter ACIFE_RS13865 PF02675 S-adenosylmethionine decarboxylase ACIFE_RS13870 PF17284 Spermidine synthase tetramerisation domain ACIFE_RS13880 PF00158 Sigma-54 interaction domain ACIFE_RS13880 PF00072 Response regulator receiver domain ACIFE_RS13890 PF00512 His Kinase A (phospho-acceptor) domain ACIFE_RS13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACIFE_RS13895 PF04362 Bacterial Fe(2+) trafficking ACIFE_RS13900 PF00633 Helix-hairpin-helix motif ACIFE_RS13900 PF00730 HhH-GPD superfamily base excision DNA repair protein ACIFE_RS13900 PF14815 NUDIX domain ACIFE_RS13910 PF05524 PEP-utilising enzyme, N-terminal ACIFE_RS13910 PF00391 PEP-utilising enzyme, mobile domain ACIFE_RS13910 PF02896 PEP-utilising enzyme, TIM barrel domain ACIFE_RS13915 PF00381 PTS HPr component phosphorylation site ACIFE_RS13925 PF03668 P-loop ATPase protein family ACIFE_RS13930 PF07475 HPr Serine kinase C-terminal domain ACIFE_RS13930 PF02603 HPr Serine kinase N terminus ACIFE_RS13935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ACIFE_RS13935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACIFE_RS13940 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACIFE_RS13945 PF00309 Sigma-54 factor, Activator interacting domain (AID) ACIFE_RS13945 PF04963 Sigma-54 factor, core binding domain ACIFE_RS13945 PF04552 Sigma-54, DNA binding domain ACIFE_RS13950 PF00005 ABC transporter ACIFE_RS13955 PF03968 OstA-like protein ACIFE_RS13970 PF00571 CBS domain ACIFE_RS13970 PF01380 SIS domain ACIFE_RS13985 PF00483 Nucleotidyl transferase ACIFE_RS13990 PF01636 Phosphotransferase enzyme family ACIFE_RS13995 PF04453 LPS transport system D ACIFE_RS14000 PF00639 PPIC-type PPIASE domain ACIFE_RS14000 PF09312 SurA N-terminal domain ACIFE_RS14005 PF01061 ABC-2 type transporter ACIFE_RS14010 PF01722 BolA-like protein ACIFE_RS14015 PF00462 Glutaredoxin ACIFE_RS14020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACIFE_RS14025 PF01634 ATP phosphoribosyltransferase ACIFE_RS14030 PF00815 Histidinol dehydrogenase ACIFE_RS14035 PF00155 Aminotransferase class I and II ACIFE_RS14040 PF00475 Imidazoleglycerol-phosphate dehydratase ACIFE_RS14045 PF00117 Glutamine amidotransferase class-I ACIFE_RS14050 PF00977 Histidine biosynthesis protein ACIFE_RS14055 PF00977 Histidine biosynthesis protein ACIFE_RS14060 PF01502 Phosphoribosyl-AMP cyclohydrolase ACIFE_RS14060 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACIFE_RS14065 PF02416 mttA/Hcf106 family ACIFE_RS14070 PF02416 mttA/Hcf106 family ACIFE_RS14075 PF00902 Sec-independent protein translocase protein (TatC) ACIFE_RS14080 PF13439 Glycosyltransferase Family 4 ACIFE_RS14080 PF00534 Glycosyl transferases group 1 ACIFE_RS14090 PF00313 'Cold-shock' DNA-binding domain ACIFE_RS14105 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS14105 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS14105 PF00563 EAL domain ACIFE_RS14110 PF02705 K+ potassium transporter ACIFE_RS14125 PF01979 Amidohydrolase family ACIFE_RS14130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACIFE_RS14130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACIFE_RS14135 PF00156 Phosphoribosyl transferase domain ACIFE_RS14140 PF03652 Holliday junction resolvase ACIFE_RS14145 PF02622 Uncharacterized ACR, COG1678 ACIFE_RS14175 PF00665 Integrase core domain ACIFE_RS14210 PF01906 Putative heavy-metal-binding ACIFE_RS14220 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACIFE_RS14255 PF01850 PIN domain ACIFE_RS14280 PF06122 Conjugative relaxosome accessory transposon protein ACIFE_RS14345 PF00436 Single-strand binding protein family ACIFE_RS14355 PF01751 Toprim domain ACIFE_RS14355 PF01131 DNA topoisomerase ACIFE_RS14370 PF08406 CbbQ/NirQ/NorQ C-terminal ACIFE_RS14370 PF07728 AAA domain (dynein-related subfamily) ACIFE_RS14390 PF02163 Peptidase family M50 ACIFE_RS14410 PF13181 Tetratricopeptide repeat ACIFE_RS14415 PF01367 5'-3' exonuclease, C-terminal SAM fold ACIFE_RS14415 PF00476 DNA polymerase family A ACIFE_RS14415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACIFE_RS14430 PF00216 Bacterial DNA-binding protein ACIFE_RS14435 PF00216 Bacterial DNA-binding protein ACIFE_RS14445 PF00589 Phage integrase family ACIFE_RS14445 PF02899 Phage integrase, N-terminal SAM-like domain ACIFE_RS14465 PF01040 UbiA prenyltransferase family ACIFE_RS14470 PF04030 D-arabinono-1,4-lactone oxidase ACIFE_RS14470 PF01565 FAD binding domain ACIFE_RS14475 PF00106 short chain dehydrogenase ACIFE_RS14485 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS14490 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS14490 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ACIFE_RS14555 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system ACIFE_RS14560 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin ACIFE_RS14610 PF00437 Type II/IV secretion system protein ACIFE_RS14610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACIFE_RS14715 PF01396 Topoisomerase DNA binding C4 zinc finger ACIFE_RS14715 PF01751 Toprim domain ACIFE_RS14715 PF01131 DNA topoisomerase ACIFE_RS14755 PF00589 Phage integrase family ACIFE_RS14755 PF13356 Arm DNA-binding domain ACIFE_RS14760 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ACIFE_RS14760 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ACIFE_RS14770 PF00285 Citrate synthase, C-terminal domain ACIFE_RS14775 PF01521 Iron-sulphur cluster biosynthesis ACIFE_RS14780 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACIFE_RS14780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACIFE_RS14785 PF02779 Transketolase, pyrimidine binding domain ACIFE_RS14785 PF00364 Biotin-requiring enzyme ACIFE_RS14785 PF02780 Transketolase, C-terminal domain ACIFE_RS14790 PF00676 Dehydrogenase E1 component ACIFE_RS14800 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACIFE_RS14800 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACIFE_RS14805 PF00380 Ribosomal protein S9/S16 ACIFE_RS14810 PF00572 Ribosomal protein L13 ACIFE_RS14825 PF00881 Nitroreductase family ACIFE_RS14860 PF00579 tRNA synthetases class I (W and Y) ACIFE_RS14865 PF00690 Cation transporter/ATPase, N-terminus ACIFE_RS14865 PF00689 Cation transporting ATPase, C-terminus ACIFE_RS14870 PF02261 Aspartate decarboxylase ACIFE_RS14880 PF01926 50S ribosome-binding GTPase ACIFE_RS14885 PF02254 TrkA-N domain ACIFE_RS14885 PF07885 Ion channel ACIFE_RS14890 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACIFE_RS14890 PF01612 3'-5' exonuclease ACIFE_RS14890 PF01367 5'-3' exonuclease, C-terminal SAM fold ACIFE_RS14890 PF00476 DNA polymerase family A ACIFE_RS14895 PF03641 Possible lysine decarboxylase ACIFE_RS14905 PF01636 Phosphotransferase enzyme family ACIFE_RS14915 PF00580 UvrD/REP helicase N-terminal domain ACIFE_RS14915 PF13361 UvrD-like helicase C-terminal domain ACIFE_RS14920 PF01556 DnaJ C terminal domain ACIFE_RS14920 PF00226 DnaJ domain ACIFE_RS14930 PF00156 Phosphoribosyl transferase domain ACIFE_RS14930 PF01738 Dienelactone hydrolase family ACIFE_RS14935 PF14791 DNA polymerase beta thumb ACIFE_RS14935 PF14716 Helix-hairpin-helix domain ACIFE_RS14935 PF02811 PHP domain ACIFE_RS14940 PF00561 alpha/beta hydrolase fold ACIFE_RS14960 PF03358 NADPH-dependent FMN reductase ACIFE_RS14970 PF00893 Small Multidrug Resistance protein ACIFE_RS14975 PF01878 EVE domain ACIFE_RS14985 PF13280 WYL domain ACIFE_RS14985 PF08279 HTH domain ACIFE_RS14995 PF00583 Acetyltransferase (GNAT) family ACIFE_RS15010 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) ACIFE_RS15020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ACIFE_RS15020 PF00361 Proton-conducting membrane transporter ACIFE_RS15030 PF01116 Fructose-bisphosphate aldolase class-II ACIFE_RS15040 PF08406 CbbQ/NirQ/NorQ C-terminal ACIFE_RS15040 PF07728 AAA domain (dynein-related subfamily) ACIFE_RS15050 PF13614 AAA domain ACIFE_RS15060 PF00210 Ferritin-like domain ACIFE_RS15065 PF00936 BMC domain ACIFE_RS15070 PF00936 BMC domain ACIFE_RS15080 PF03319 Ethanolamine utilisation protein EutN/carboxysome ACIFE_RS15095 PF00101 Ribulose bisphosphate carboxylase, small chain ACIFE_RS15100 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ACIFE_RS15100 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ACIFE_RS15105 PF03466 LysR substrate binding domain ACIFE_RS15105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS15120 PF07690 Major Facilitator Superfamily ACIFE_RS15130 PF00654 Voltage gated chloride channel ACIFE_RS15135 PF03466 LysR substrate binding domain ACIFE_RS15135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACIFE_RS15150 PF00732 GMC oxidoreductase ACIFE_RS15150 PF05199 GMC oxidoreductase ACIFE_RS15165 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS15165 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS15165 PF00563 EAL domain ACIFE_RS15180 PF07690 Major Facilitator Superfamily ACIFE_RS15185 PF15887 Putative zinc-binding metallo-peptidase ACIFE_RS15185 PF10005 zinc-ribbon domain ACIFE_RS15240 PF00005 ABC transporter ACIFE_RS15245 PF01042 Endoribonuclease L-PSP ACIFE_RS15250 PF03069 Acetamidase/Formamidase family ACIFE_RS15270 PF13195 Protein of unknown function (DUF4011) ACIFE_RS15270 PF13087 AAA domain ACIFE_RS15270 PF13086 AAA domain ACIFE_RS15270 PF13087 AAA domain ACIFE_RS15270 PF13086 AAA domain ACIFE_RS15270 PF13195 Protein of unknown function (DUF4011) ACIFE_RS15285 PF01380 SIS domain ACIFE_RS15290 PF14602 Hexapeptide repeat of succinyl-transferase ACIFE_RS15290 PF00132 Bacterial transferase hexapeptide (six repeats) ACIFE_RS15290 PF12804 MobA-like NTP transferase domain ACIFE_RS15295 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACIFE_RS15295 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ACIFE_RS15300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIFE_RS15300 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIFE_RS15305 PF00231 ATP synthase ACIFE_RS15310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACIFE_RS15310 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACIFE_RS15310 PF00306 ATP synthase alpha/beta chain, C terminal domain ACIFE_RS15315 PF00213 ATP synthase delta (OSCP) subunit ACIFE_RS15320 PF00430 ATP synthase B/B' CF(0) ACIFE_RS15325 PF00137 ATP synthase subunit C ACIFE_RS15330 PF00119 ATP synthase A chain ACIFE_RS15340 PF02195 ParB-like nuclease domain ACIFE_RS15340 PF17762 HTH domain found in ParB protein ACIFE_RS15345 PF13614 AAA domain ACIFE_RS15350 PF02527 rRNA small subunit methyltransferase G ACIFE_RS15355 PF13932 GidA associated domain ACIFE_RS15355 PF01134 Glucose inhibited division protein A ACIFE_RS15370 PF00994 Probable molybdopterin binding domain ACIFE_RS15400 PF02754 Cysteine-rich domain ACIFE_RS15400 PF13183 4Fe-4S dicluster domain ACIFE_RS15405 PF01565 FAD binding domain ACIFE_RS15410 PF02913 FAD linked oxidases, C-terminal domain ACIFE_RS15410 PF01565 FAD binding domain ACIFE_RS15425 PF01614 Bacterial transcriptional regulator ACIFE_RS15425 PF09339 IclR helix-turn-helix domain ACIFE_RS15440 PF00534 Glycosyl transferases group 1 ACIFE_RS15440 PF13439 Glycosyltransferase Family 4 ACIFE_RS15460 PF13007 Transposase C of IS166 homeodomain ACIFE_RS15460 PF13817 IS66 C-terminal element ACIFE_RS15460 PF03050 Transposase IS66 family ACIFE_RS15460 PF13005 zinc-finger binding domain of transposase IS66 ACIFE_RS15470 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) ACIFE_RS15490 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS15500 PF01370 NAD dependent epimerase/dehydratase family ACIFE_RS15505 PF14307 Glycosyltransferase WbsX ACIFE_RS15505 PF05045 Rhamnan synthesis protein F ACIFE_RS15540 PF00005 ABC transporter ACIFE_RS15545 PF01061 ABC-2 type transporter ACIFE_RS15590 PF16363 GDP-mannose 4,6 dehydratase ACIFE_RS15595 PF04321 RmlD substrate binding domain ACIFE_RS15600 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ACIFE_RS15605 PF00483 Nucleotidyl transferase ACIFE_RS15610 PF00083 Sugar (and other) transporter ACIFE_RS15620 PF00490 Delta-aminolevulinic acid dehydratase ACIFE_RS15630 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACIFE_RS15630 PF03900 Porphobilinogen deaminase, C-terminal domain ACIFE_RS15640 PF01230 HIT domain ACIFE_RS15645 PF00202 Aminotransferase class-III ACIFE_RS15650 PF02581 Thiamine monophosphate synthase ACIFE_RS15655 PF08543 Phosphomethylpyrimidine kinase ACIFE_RS15675 PF02167 Cytochrome C1 family ACIFE_RS15680 PF00033 Cytochrome b/b6/petB ACIFE_RS15680 PF00032 Cytochrome b(C-terminal)/b6/petD ACIFE_RS15685 PF00355 Rieske [2Fe-2S] domain ACIFE_RS15685 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ACIFE_RS15695 PF00034 Cytochrome c ACIFE_RS15710 PF01136 Peptidase family U32 ACIFE_RS15750 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS15750 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS15750 PF00563 EAL domain ACIFE_RS15780 PF00589 Phage integrase family ACIFE_RS15790 PF00437 Type II/IV secretion system protein ACIFE_RS15800 PF10548 P22AR C-terminal domain ACIFE_RS15800 PF08346 AntA/AntB antirepressor ACIFE_RS15810 PF07929 Plasmid pRiA4b ORF-3-like protein ACIFE_RS15830 PF00563 EAL domain ACIFE_RS15830 PF00990 Diguanylate cyclase, GGDEF domain ACIFE_RS15830 PF13188 PAS domain ACIFE_RS15830 PF03707 Bacterial signalling protein N terminal repeat ACIFE_RS15835 PF00535 Glycosyl transferase family 2 ACIFE_RS15865 PF08401 Domain of unknown function (DUF1738) ACIFE_RS15865 PF18818 Metallopeptidase superfamily domain ACIFE_RS15885 PF01066 CDP-alcohol phosphatidyltransferase ACIFE_RS15960 PF00535 Glycosyl transferase family 2 ACIFE_RS15965 PF02036 SCP-2 sterol transfer family