AFE_RS00105	PWY-6825	phosphatidylcholine biosynthesis V
AFE_RS00210	PWY-5303	thiosulfate oxidation II (via tetrathionate)
AFE_RS00230	PWY-5303	thiosulfate oxidation II (via tetrathionate)
AFE_RS00275	PWY-5316	nicotine biosynthesis
AFE_RS00275	PWY-7342	superpathway of nicotine biosynthesis
AFE_RS00330	PWY-6703	preQ<sub>0</sub> biosynthesis
AFE_RS00335	PWY-6703	preQ<sub>0</sub> biosynthesis
AFE_RS00465	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFE_RS00465	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_RS00580	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
AFE_RS00580	PWY-5368	dimorphecolate biosynthesis
AFE_RS00580	PWY-5995	linoleate biosynthesis I (plants)
AFE_RS00580	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
AFE_RS00580	PWY-6803	phosphatidylcholine acyl editing
AFE_RS00580	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
AFE_RS00580	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AFE_RS00580	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AFE_RS00580	PWY-7470	phosphatidylcholine biosynthesis VII
AFE_RS00580	PWY-7618	ricinoleate biosynthesis
AFE_RS00595	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFE_RS00595	PWY-6148	tetrahydromethanopterin biosynthesis
AFE_RS00595	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AFE_RS00595	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFE_RS00655	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
AFE_RS00670	PWY-2201	folate transformations I
AFE_RS00725	PWY-6834	spermidine biosynthesis III
AFE_RS00765	PWY-7294	xylose degradation IV
AFE_RS00765	PWY-7295	L-arabinose degradation IV
AFE_RS00850	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_RS00885	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS00925	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_RS00925	PWY-6416	quinate degradation II
AFE_RS00925	PWY-6707	gallate biosynthesis
AFE_RS00955	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_RS00955	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_RS00960	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_RS00960	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_RS00965	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_RS00965	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_RS00970	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_RS00970	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_RS00970	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_RS00970	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_RS00980	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_RS00980	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_RS00985	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_RS00985	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_RS00985	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_RS00990	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_RS00990	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_RS01010	PWY-2201	folate transformations I
AFE_RS01035	PWY-2201	folate transformations I
AFE_RS01035	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_RS01050	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS01055	PWY-6502	oxidized GTP and dGTP detoxification
AFE_RS01055	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFE_RS01055	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFE_RS01055	PWY-6897	thiamin salvage II
AFE_RS01055	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AFE_RS01055	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AFE_RS01055	PWY-7356	thiamin salvage IV (yeast)
AFE_RS01055	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AFE_RS01105	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AFE_RS01115	PWY-6936	seleno-amino acid biosynthesis
AFE_RS01125	PWY-6004	glycine betaine biosynthesis V (from glycine)
AFE_RS01135	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_RS01135	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AFE_RS01135	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AFE_RS01140	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_RS01145	PWY-2201	folate transformations I
AFE_RS01145	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_RS01150	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFE_RS01205	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS01205	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS01220	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFE_RS01235	PWY-3341	L-proline biosynthesis III
AFE_RS01235	PWY-4981	L-proline biosynthesis II (from arginine)
AFE_RS01235	PWY-6344	L-ornithine degradation II (Stickland reaction)
AFE_RS01240	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_RS01285	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_RS01285	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_RS01335	PWY-3341	L-proline biosynthesis III
AFE_RS01335	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_RS01360	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFE_RS01360	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS01360	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFE_RS01360	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFE_RS01365	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFE_RS01365	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AFE_RS01365	PWY-6936	seleno-amino acid biosynthesis
AFE_RS01365	PWY-702	L-methionine biosynthesis II
AFE_RS01370	PWY-5839	menaquinol-7 biosynthesis
AFE_RS01370	PWY-5844	menaquinol-9 biosynthesis
AFE_RS01370	PWY-5849	menaquinol-6 biosynthesis
AFE_RS01370	PWY-5890	menaquinol-10 biosynthesis
AFE_RS01370	PWY-5891	menaquinol-11 biosynthesis
AFE_RS01370	PWY-5892	menaquinol-12 biosynthesis
AFE_RS01370	PWY-5895	menaquinol-13 biosynthesis
AFE_RS01385	PWY-5344	L-homocysteine biosynthesis
AFE_RS01395	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_RS01395	PWY-181	photorespiration
AFE_RS01395	PWY-2161	folate polyglutamylation
AFE_RS01395	PWY-2201	folate transformations I
AFE_RS01395	PWY-3661	glycine betaine degradation I
AFE_RS01395	PWY-3661-1	glycine betaine degradation II (mammalian)
AFE_RS01395	PWY-3841	folate transformations II
AFE_RS01395	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_RS01405	PWY-5525	D-glucuronate degradation I
AFE_RS01410	PWY-6167	flavin biosynthesis II (archaea)
AFE_RS01410	PWY-6168	flavin biosynthesis III (fungi)
AFE_RS01410	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS01415	PWY-6167	flavin biosynthesis II (archaea)
AFE_RS01415	PWY-6168	flavin biosynthesis III (fungi)
AFE_RS01415	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AFE_RS01420	PWY-6167	flavin biosynthesis II (archaea)
AFE_RS01420	PWY-6168	flavin biosynthesis III (fungi)
AFE_RS01645	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS01680	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_RS01680	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS01680	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS01680	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AFE_RS01695	PWY-7039	phosphatidate metabolism, as a signaling molecule
AFE_RS01730	PWY-4081	glutathione redox reactions I
AFE_RS01750	PWY-7560	methylerythritol phosphate pathway II
AFE_RS01755	PWY-7560	methylerythritol phosphate pathway II
AFE_RS01800	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AFE_RS01885	PWY-5386	methylglyoxal degradation I
AFE_RS01910	PWY-5386	methylglyoxal degradation I
AFE_RS01920	PWY-4983	L-citrulline-nitric oxide cycle
AFE_RS01920	PWY-4984	urea cycle
AFE_RS01920	PWY-5	canavanine biosynthesis
AFE_RS01920	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS01920	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS01925	PWY-4981	L-proline biosynthesis II (from arginine)
AFE_RS01925	PWY-4984	urea cycle
AFE_RS01925	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS01935	PWY-2941	L-lysine biosynthesis II
AFE_RS01935	PWY-2942	L-lysine biosynthesis III
AFE_RS01935	PWY-5097	L-lysine biosynthesis VI
AFE_RS01935	PWY-6559	spermidine biosynthesis II
AFE_RS01935	PWY-6562	norspermidine biosynthesis
AFE_RS01935	PWY-7153	grixazone biosynthesis
AFE_RS01975	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_RS01975	PWY-5723	Rubisco shunt
AFE_RS01980	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFE_RS01980	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFE_RS01980	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFE_RS01980	PWY-6113	superpathway of mycolate biosynthesis
AFE_RS01980	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFE_RS01980	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_RS01980	PWY-7663	gondoate biosynthesis (anaerobic)
AFE_RS01980	PWY-7664	oleate biosynthesis IV (anaerobic)
AFE_RS01980	PWYG-321	mycolate biosynthesis
AFE_RS01990	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_RS02000	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_RS02000	PWY-6549	L-glutamine biosynthesis III
AFE_RS02000	PWY-6728	methylaspartate cycle
AFE_RS02000	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_RS02000	PWY-7124	ethylene biosynthesis V (engineered)
AFE_RS02000	PWY-7254	TCA cycle VII (acetate-producers)
AFE_RS02000	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFE_RS02005	PWY-5392	reductive TCA cycle II
AFE_RS02005	PWY-5537	pyruvate fermentation to acetate V
AFE_RS02005	PWY-5538	pyruvate fermentation to acetate VI
AFE_RS02005	PWY-5690	TCA cycle II (plants and fungi)
AFE_RS02005	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_RS02005	PWY-6728	methylaspartate cycle
AFE_RS02005	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_RS02005	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFE_RS02015	PWY-5392	reductive TCA cycle II
AFE_RS02015	PWY-5537	pyruvate fermentation to acetate V
AFE_RS02015	PWY-5538	pyruvate fermentation to acetate VI
AFE_RS02015	PWY-5690	TCA cycle II (plants and fungi)
AFE_RS02015	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_RS02015	PWY-6728	methylaspartate cycle
AFE_RS02015	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_RS02015	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFE_RS02020	PWY-5381	pyridine nucleotide cycling (plants)
AFE_RS02020	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFE_RS02045	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AFE_RS02045	PWY-5389	3-methylthiopropanoate biosynthesis
AFE_RS02050	PWY-5532	adenosine nucleotides degradation IV
AFE_RS02050	PWY-5723	Rubisco shunt
AFE_RS02060	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AFE_RS02060	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_RS02060	PWY-6416	quinate degradation II
AFE_RS02060	PWY-6707	gallate biosynthesis
AFE_RS02080	PWY-3221	dTDP-L-rhamnose biosynthesis II
AFE_RS02080	PWY-6808	dTDP-D-forosamine biosynthesis
AFE_RS02080	PWY-6942	dTDP-D-desosamine biosynthesis
AFE_RS02080	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AFE_RS02080	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AFE_RS02080	PWY-6974	dTDP-L-olivose biosynthesis
AFE_RS02080	PWY-6976	dTDP-L-mycarose biosynthesis
AFE_RS02080	PWY-7104	dTDP-L-megosamine biosynthesis
AFE_RS02080	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AFE_RS02080	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AFE_RS02080	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AFE_RS02080	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AFE_RS02080	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AFE_RS02080	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AFE_RS02080	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AFE_RS02080	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AFE_RS02080	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AFE_RS02080	PWY-7688	AFE_RS02080
AFE_RS02100	PWY-3801	sucrose degradation II (sucrose synthase)
AFE_RS02100	PWY-6527	stachyose degradation
AFE_RS02100	PWY-7238	sucrose biosynthesis II
AFE_RS02100	PWY-7343	UDP-glucose biosynthesis
AFE_RS02130	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AFE_RS02130	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFE_RS02130	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AFE_RS02135	PWY-3961	phosphopantothenate biosynthesis II
AFE_RS02145	PWY-3341	L-proline biosynthesis III
AFE_RS02145	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_RS02170	PWY-7731	AFE_RS02170
AFE_RS02180	PWY-6454	vancomycin resistance I
AFE_RS02180	PWY-6455	vancomycin resistance II
AFE_RS02200	PWY-381	nitrate reduction II (assimilatory)
AFE_RS02200	PWY-5675	nitrate reduction V (assimilatory)
AFE_RS02200	PWY-6549	L-glutamine biosynthesis III
AFE_RS02200	PWY-6963	ammonia assimilation cycle I
AFE_RS02200	PWY-6964	ammonia assimilation cycle II
AFE_RS02210	PWY-5381	pyridine nucleotide cycling (plants)
AFE_RS02210	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFE_RS02210	PWY-6596	adenosine nucleotides degradation I
AFE_RS02210	PWY-6606	guanosine nucleotides degradation II
AFE_RS02210	PWY-6607	guanosine nucleotides degradation I
AFE_RS02210	PWY-6608	guanosine nucleotides degradation III
AFE_RS02210	PWY-7185	UTP and CTP dephosphorylation I
AFE_RS02310	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AFE_RS02325	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_RS02475	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS02475	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_RS02475	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS02475	PWY-5723	Rubisco shunt
AFE_RS02475	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS02475	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS02475	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS02475	PWY-7003	glycerol degradation to butanol
AFE_RS02475	PWY-7124	ethylene biosynthesis V (engineered)
AFE_RS02475	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_RS02480	PWY-5941	glycogen degradation II (eukaryotic)
AFE_RS02480	PWY-6731	starch degradation III
AFE_RS02480	PWY-6737	starch degradation V
AFE_RS02480	PWY-7238	sucrose biosynthesis II
AFE_RS02490	PWY-5350	thiosulfate disproportionation III (rhodanese)
AFE_RS02505	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFE_RS02505	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AFE_RS02510	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFE_RS02515	PWY-2201	folate transformations I
AFE_RS02515	PWY-3841	folate transformations II
AFE_RS02520	PWY-5723	Rubisco shunt
AFE_RS02535	PWY-5278	sulfite oxidation III
AFE_RS02535	PWY-5340	sulfate activation for sulfonation
AFE_RS02535	PWY-6683	sulfate reduction III (assimilatory)
AFE_RS02535	PWY-6932	selenate reduction
AFE_RS02570	PWY-5057	L-valine degradation II
AFE_RS02570	PWY-5076	L-leucine degradation III
AFE_RS02570	PWY-5078	L-isoleucine degradation II
AFE_RS02570	PWY-5101	L-isoleucine biosynthesis II
AFE_RS02570	PWY-5103	L-isoleucine biosynthesis III
AFE_RS02570	PWY-5104	L-isoleucine biosynthesis IV
AFE_RS02570	PWY-5108	L-isoleucine biosynthesis V
AFE_RS02620	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AFE_RS02620	PWY-6167	flavin biosynthesis II (archaea)
AFE_RS02620	PWY-6168	flavin biosynthesis III (fungi)
AFE_RS02645	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS02680	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_RS02710	PWY-5958	acridone alkaloid biosynthesis
AFE_RS02710	PWY-6543	4-aminobenzoate biosynthesis
AFE_RS02710	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFE_RS02710	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFE_RS02785	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
AFE_RS02785	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AFE_RS02785	PWY-6148	tetrahydromethanopterin biosynthesis
AFE_RS02885	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_RS02885	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AFE_RS02885	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AFE_RS02885	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_RS02905	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AFE_RS02950	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AFE_RS02950	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFE_RS02955	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_RS02955	PWY-5723	Rubisco shunt
AFE_RS02975	PWY-3781	aerobic respiration I (cytochrome c)
AFE_RS02975	PWY-4521	arsenite oxidation I (respiratory)
AFE_RS02975	PWY-6692	Fe(II) oxidation
AFE_RS02975	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFE_RS03000	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AFE_RS03010	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS03010	PWY-5686	UMP biosynthesis
AFE_RS03010	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS03015	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS03015	PWY-5686	UMP biosynthesis
AFE_RS03015	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS03030	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_RS03030	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_RS03105	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS03125	PWY-5101	L-isoleucine biosynthesis II
AFE_RS03125	PWY-5103	L-isoleucine biosynthesis III
AFE_RS03125	PWY-5104	L-isoleucine biosynthesis IV
AFE_RS03125	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_RS03135	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS03160	PWY-2301	<i>myo</i>-inositol biosynthesis
AFE_RS03160	PWY-4702	phytate degradation I
AFE_RS03160	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AFE_RS03165	PWY-6004	glycine betaine biosynthesis V (from glycine)
AFE_RS03170	PWY-6936	seleno-amino acid biosynthesis
AFE_RS03170	PWY-7274	D-cycloserine biosynthesis
AFE_RS03180	PWY-6823	molybdenum cofactor biosynthesis
AFE_RS03180	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_RS03180	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_RS03180	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFE_RS03290	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFE_RS03295	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFE_RS03295	PWY-3162	L-tryptophan degradation V (side chain pathway)
AFE_RS03295	PWY-5057	L-valine degradation II
AFE_RS03295	PWY-5076	L-leucine degradation III
AFE_RS03295	PWY-5078	L-isoleucine degradation II
AFE_RS03295	PWY-5079	L-phenylalanine degradation III
AFE_RS03295	PWY-5082	L-methionine degradation III
AFE_RS03295	PWY-5480	pyruvate fermentation to ethanol I
AFE_RS03295	PWY-5486	pyruvate fermentation to ethanol II
AFE_RS03295	PWY-5751	phenylethanol biosynthesis
AFE_RS03295	PWY-6313	serotonin degradation
AFE_RS03295	PWY-6333	acetaldehyde biosynthesis I
AFE_RS03295	PWY-6342	noradrenaline and adrenaline degradation
AFE_RS03295	PWY-6454	vancomycin resistance I
AFE_RS03295	PWY-6587	pyruvate fermentation to ethanol III
AFE_RS03295	PWY-6802	salidroside biosynthesis
AFE_RS03295	PWY-6871	3-methylbutanol biosynthesis
AFE_RS03295	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS03295	PWY-7013	L-1,2-propanediol degradation
AFE_RS03295	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_RS03295	PWY-7118	chitin degradation to ethanol
AFE_RS03295	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFE_RS03300	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AFE_RS03445	PWY-5667	CDP-diacylglycerol biosynthesis I
AFE_RS03445	PWY-5981	CDP-diacylglycerol biosynthesis III
AFE_RS03445	PWY-6453	stigma estolide biosynthesis
AFE_RS03445	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AFE_RS03445	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AFE_RS03445	PWY-7587	oleate biosynthesis III (cyanobacteria)
AFE_RS03445	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
AFE_RS03450	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFE_RS03450	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_RS03470	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AFE_RS03470	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AFE_RS03470	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_RS03470	PWY-6936	seleno-amino acid biosynthesis
AFE_RS03470	PWY-702	L-methionine biosynthesis II
AFE_RS03475	PWY-6164	3-dehydroquinate biosynthesis I
AFE_RS03480	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_RS03530	PWY-5101	L-isoleucine biosynthesis II
AFE_RS03530	PWY-5103	L-isoleucine biosynthesis III
AFE_RS03530	PWY-5104	L-isoleucine biosynthesis IV
AFE_RS03530	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AFE_RS03530	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AFE_RS03530	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AFE_RS03530	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_RS03535	PWY-5101	L-isoleucine biosynthesis II
AFE_RS03535	PWY-5103	L-isoleucine biosynthesis III
AFE_RS03535	PWY-5104	L-isoleucine biosynthesis IV
AFE_RS03535	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AFE_RS03535	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AFE_RS03535	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AFE_RS03535	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_RS03540	PWY-5103	L-isoleucine biosynthesis III
AFE_RS03540	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_RS03545	PWY-5669	phosphatidylethanolamine biosynthesis I
AFE_RS03550	PWY-5669	phosphatidylethanolamine biosynthesis I
AFE_RS03555	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS03555	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_RS03555	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS03555	PWY-5723	Rubisco shunt
AFE_RS03555	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS03555	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS03555	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS03555	PWY-7003	glycerol degradation to butanol
AFE_RS03555	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_RS03555	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_RS03565	PWY-6700	queuosine biosynthesis
AFE_RS03640	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_RS03640	PWY-6606	guanosine nucleotides degradation II
AFE_RS03640	PWY-6608	guanosine nucleotides degradation III
AFE_RS03640	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AFE_RS03645	PWY-6610	adenine and adenosine salvage IV
AFE_RS03670	PWY-5694	allantoin degradation to glyoxylate I
AFE_RS03670	PWY-5705	allantoin degradation to glyoxylate III
AFE_RS03690	PWY-5169	cyanurate degradation
AFE_RS03690	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFE_RS03705	PWY-4041	&gamma;-glutamyl cycle
AFE_RS03705	PWY-5826	hypoglycin biosynthesis
AFE_RS03710	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AFE_RS03710	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFE_RS03965	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AFE_RS03965	PWY-7177	UTP and CTP dephosphorylation II
AFE_RS03965	PWY-7185	UTP and CTP dephosphorylation I
AFE_RS03970	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_RS03970	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_RS03975	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS03975	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_RS03975	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_RS03975	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS03975	PWY-5723	Rubisco shunt
AFE_RS03975	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS03975	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS03975	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS03975	PWY-7003	glycerol degradation to butanol
AFE_RS03975	PWY-7124	ethylene biosynthesis V (engineered)
AFE_RS03975	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_RS04000	PWY-5269	cardiolipin biosynthesis II
AFE_RS04000	PWY-5668	cardiolipin biosynthesis I
AFE_RS04190	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AFE_RS04190	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AFE_RS04210	PWY-3461	L-tyrosine biosynthesis II
AFE_RS04210	PWY-3462	L-phenylalanine biosynthesis II
AFE_RS04210	PWY-6120	L-tyrosine biosynthesis III
AFE_RS04210	PWY-6627	salinosporamide A biosynthesis
AFE_RS04210	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AFE_RS04210	PWY-7626	bacilysin biosynthesis
AFE_RS04220	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_RS04220	PWY-6164	3-dehydroquinate biosynthesis I
AFE_RS04220	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_RS04225	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AFE_RS04230	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_RS04235	PWY-7205	CMP phosphorylation
AFE_RS04255	PWY-5686	UMP biosynthesis
AFE_RS04260	PWY-5686	UMP biosynthesis
AFE_RS04355	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFE_RS04355	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFE_RS04355	PWY-6896	thiamin salvage I
AFE_RS04355	PWY-6897	thiamin salvage II
AFE_RS04360	PWY-5269	cardiolipin biosynthesis II
AFE_RS04360	PWY-5668	cardiolipin biosynthesis I
AFE_RS04425	PWY-6749	CMP-legionaminate biosynthesis I
AFE_RS04440	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AFE_RS04570	PWY-6823	molybdenum cofactor biosynthesis
AFE_RS06300	PWY-3821	galactose degradation III
AFE_RS06300	PWY-6317	galactose degradation I (Leloir pathway)
AFE_RS06300	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AFE_RS06300	PWY-6527	stachyose degradation
AFE_RS06300	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AFE_RS06300	PWY-7344	UDP-D-galactose biosynthesis
AFE_RS06305	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AFE_RS06410	PWY-5659	GDP-mannose biosynthesis
AFE_RS06410	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AFE_RS06535	PWY-5316	nicotine biosynthesis
AFE_RS06535	PWY-7342	superpathway of nicotine biosynthesis
AFE_RS06590	PWY-6012	acyl carrier protein metabolism I
AFE_RS06590	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AFE_RS06595	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AFE_RS06765	PWY-5667	CDP-diacylglycerol biosynthesis I
AFE_RS06765	PWY-5981	CDP-diacylglycerol biosynthesis III
AFE_RS06770	PWY-7294	xylose degradation IV
AFE_RS06770	PWY-7295	L-arabinose degradation IV
AFE_RS06770	PWY-7560	methylerythritol phosphate pathway II
AFE_RS06795	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFE_RS06795	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFE_RS06795	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFE_RS06795	PWY-5994	palmitate biosynthesis I (animals and fungi)
AFE_RS06795	PWY-6113	superpathway of mycolate biosynthesis
AFE_RS06795	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFE_RS06795	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_RS06795	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_RS06795	PWY-7663	gondoate biosynthesis (anaerobic)
AFE_RS06795	PWY-7664	oleate biosynthesis IV (anaerobic)
AFE_RS06795	PWYG-321	mycolate biosynthesis
AFE_RS06815	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AFE_RS06815	PWY-622	starch biosynthesis
AFE_RS06830	PWY-4381	fatty acid biosynthesis initiation I
AFE_RS06830	PWY-5743	3-hydroxypropanoate cycle
AFE_RS06830	PWY-5744	glyoxylate assimilation
AFE_RS06830	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFE_RS06830	PWY-6679	jadomycin biosynthesis
AFE_RS06830	PWY-6722	candicidin biosynthesis
AFE_RS06830	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_RS06840	PWY-5686	UMP biosynthesis
AFE_RS06870	PWY-40	putrescine biosynthesis I
AFE_RS06870	PWY-43	putrescine biosynthesis II
AFE_RS06870	PWY-6305	putrescine biosynthesis IV
AFE_RS06870	PWY-6834	spermidine biosynthesis III
AFE_RS07035	PWY-6936	seleno-amino acid biosynthesis
AFE_RS07035	PWY-7274	D-cycloserine biosynthesis
AFE_RS07040	PWY-3081	L-lysine biosynthesis V
AFE_RS07040	PWY-6871	3-methylbutanol biosynthesis
AFE_RS07040	PWY-7710	AFE_RS07040
AFE_RS07045	PWY-6823	molybdenum cofactor biosynthesis
AFE_RS07045	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_RS07045	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_RS07045	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFE_RS07145	PWY-6823	molybdenum cofactor biosynthesis
AFE_RS07185	PWY-6823	molybdenum cofactor biosynthesis
AFE_RS07185	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_RS07185	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_RS07185	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AFE_RS07220	PWY-5381	pyridine nucleotide cycling (plants)
AFE_RS07260	PWY-3801	sucrose degradation II (sucrose synthase)
AFE_RS07760	PWY-5686	UMP biosynthesis
AFE_RS07765	PWY-5101	L-isoleucine biosynthesis II
AFE_RS07765	PWY-5103	L-isoleucine biosynthesis III
AFE_RS07765	PWY-5104	L-isoleucine biosynthesis IV
AFE_RS07765	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_RS07780	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AFE_RS07805	PWY-7158	L-phenylalanine degradation V
AFE_RS07850	PWY-5532	adenosine nucleotides degradation IV
AFE_RS07850	PWY-5723	Rubisco shunt
AFE_RS07855	PWY-5532	adenosine nucleotides degradation IV
AFE_RS07855	PWY-5723	Rubisco shunt
AFE_RS08210	PWY-6654	phosphopantothenate biosynthesis III
AFE_RS08240	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AFE_RS08240	PWY-6596	adenosine nucleotides degradation I
AFE_RS08240	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS08245	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS08270	PWY-3341	L-proline biosynthesis III
AFE_RS08270	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_RS08350	PWY-5941	glycogen degradation II (eukaryotic)
AFE_RS08350	PWY-6731	starch degradation III
AFE_RS08350	PWY-6737	starch degradation V
AFE_RS08350	PWY-7238	sucrose biosynthesis II
AFE_RS08355	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS08355	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_RS08355	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_RS08355	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS08355	PWY-5723	Rubisco shunt
AFE_RS08355	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS08355	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS08355	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS08355	PWY-7003	glycerol degradation to butanol
AFE_RS08355	PWY-7124	ethylene biosynthesis V (engineered)
AFE_RS08355	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_RS08360	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS08360	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_RS08360	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS08360	PWY-5723	Rubisco shunt
AFE_RS08360	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS08360	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS08360	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS08360	PWY-7003	glycerol degradation to butanol
AFE_RS08360	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_RS08360	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_RS08385	PWY-1281	sulfoacetaldehyde degradation I
AFE_RS08385	PWY-5482	pyruvate fermentation to acetate II
AFE_RS08385	PWY-5485	pyruvate fermentation to acetate IV
AFE_RS08385	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_RS08385	PWY-6637	sulfolactate degradation II
AFE_RS08395	PWY-5482	pyruvate fermentation to acetate II
AFE_RS08395	PWY-5485	pyruvate fermentation to acetate IV
AFE_RS08395	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_RS08420	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS08420	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_RS08420	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS08420	PWY-5723	Rubisco shunt
AFE_RS08420	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS08420	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS08420	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS08420	PWY-7003	glycerol degradation to butanol
AFE_RS08420	PWY-7124	ethylene biosynthesis V (engineered)
AFE_RS08420	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_RS08425	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS08460	PWY-181	photorespiration
AFE_RS08465	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AFE_RS08465	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AFE_RS08465	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AFE_RS08465	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AFE_RS08465	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AFE_RS08465	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AFE_RS08465	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AFE_RS08465	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AFE_RS08465	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AFE_RS08465	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AFE_RS08535	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_RS08535	PWY-5723	Rubisco shunt
AFE_RS08535	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_RS08535	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_RS08535	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS08535	PWY-7560	methylerythritol phosphate pathway II
AFE_RS08600	PWY-5941	glycogen degradation II (eukaryotic)
AFE_RS08605	PWY-7158	L-phenylalanine degradation V
AFE_RS08680	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AFE_RS08680	PWY-2201	folate transformations I
AFE_RS08680	PWY-3841	folate transformations II
AFE_RS08680	PWY-5030	L-histidine degradation III
AFE_RS08680	PWY-5497	purine nucleobases degradation II (anaerobic)
AFE_RS08680	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AFE_RS08710	PWY-1622	formaldehyde assimilation I (serine pathway)
AFE_RS08710	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AFE_RS08710	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_RS08710	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS08710	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AFE_RS08710	PWY-6549	L-glutamine biosynthesis III
AFE_RS08710	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AFE_RS08710	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AFE_RS08710	PWY-7124	ethylene biosynthesis V (engineered)
AFE_RS08740	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS08775	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_RS08775	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AFE_RS08780	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_RS08780	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_RS08780	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_RS08785	PWY-6854	ethylene biosynthesis III (microbes)
AFE_RS08790	PWY-5269	cardiolipin biosynthesis II
AFE_RS08790	PWY-5668	cardiolipin biosynthesis I
AFE_RS08820	PWY-4381	fatty acid biosynthesis initiation I
AFE_RS08825	PWY-4381	fatty acid biosynthesis initiation I
AFE_RS08825	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AFE_RS08825	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_RS08830	PWY-5367	petroselinate biosynthesis
AFE_RS08830	PWY-5515	L-arabinose degradation II
AFE_RS08830	PWY-5525	D-glucuronate degradation I
AFE_RS08830	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AFE_RS08830	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AFE_RS08830	PWY-5989	stearate biosynthesis II (bacteria and plants)
AFE_RS08830	PWY-5994	palmitate biosynthesis I (animals and fungi)
AFE_RS08830	PWY-6113	superpathway of mycolate biosynthesis
AFE_RS08830	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AFE_RS08830	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AFE_RS08830	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_RS08830	PWY-7663	gondoate biosynthesis (anaerobic)
AFE_RS08830	PWY-7664	oleate biosynthesis IV (anaerobic)
AFE_RS08830	PWYG-321	mycolate biosynthesis
AFE_RS08845	PWY-6543	4-aminobenzoate biosynthesis
AFE_RS08855	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_RS08855	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS08855	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS08855	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AFE_RS08855	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_RS08855	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_RS08920	PWY-2781	<i>cis</i>-zeatin biosynthesis
AFE_RS08925	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_RS08925	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AFE_RS08925	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS08925	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS08925	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AFE_RS08925	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_RS08925	PWY-7205	CMP phosphorylation
AFE_RS08925	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_RS08925	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS08925	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS08925	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS08925	PWY-7224	purine deoxyribonucleosides salvage
AFE_RS08925	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS08925	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFE_RS08930	PWY-2201	folate transformations I
AFE_RS09075	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_RS09075	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_RS09120	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AFE_RS09120	PWY-7118	chitin degradation to ethanol
AFE_RS09135	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_RS09140	PWY-5663	tetrahydrobiopterin biosynthesis I
AFE_RS09140	PWY-5664	tetrahydrobiopterin biosynthesis II
AFE_RS09140	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AFE_RS09140	PWY-6703	preQ<sub>0</sub> biosynthesis
AFE_RS09140	PWY-6983	tetrahydrobiopterin biosynthesis III
AFE_RS09140	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AFE_RS09145	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_RS09145	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_RS09145	PWY-7560	methylerythritol phosphate pathway II
AFE_RS09205	PWY-6871	3-methylbutanol biosynthesis
AFE_RS09230	PWY-6167	flavin biosynthesis II (archaea)
AFE_RS09230	PWY-6168	flavin biosynthesis III (fungi)
AFE_RS09245	PWY-6157	autoinducer AI-1 biosynthesis
AFE_RS09360	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AFE_RS09500	PWY-6700	queuosine biosynthesis
AFE_RS09505	PWY-6700	queuosine biosynthesis
AFE_RS09525	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_RS09525	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_RS09525	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_RS09525	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AFE_RS09535	PWY-2161	folate polyglutamylation
AFE_RS09540	PWY-4381	fatty acid biosynthesis initiation I
AFE_RS09540	PWY-5743	3-hydroxypropanoate cycle
AFE_RS09540	PWY-5744	glyoxylate assimilation
AFE_RS09540	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AFE_RS09540	PWY-6679	jadomycin biosynthesis
AFE_RS09540	PWY-6722	candicidin biosynthesis
AFE_RS09540	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AFE_RS09570	PWY-2941	L-lysine biosynthesis II
AFE_RS09570	PWY-2942	L-lysine biosynthesis III
AFE_RS09570	PWY-5097	L-lysine biosynthesis VI
AFE_RS09570	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS09570	PWY-6559	spermidine biosynthesis II
AFE_RS09570	PWY-6562	norspermidine biosynthesis
AFE_RS09570	PWY-7153	grixazone biosynthesis
AFE_RS09570	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS09575	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFE_RS09580	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AFE_RS09580	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AFE_RS09590	PWY-6823	molybdenum cofactor biosynthesis
AFE_RS09605	PWY-2661	trehalose biosynthesis V
AFE_RS09610	PWY-2661	trehalose biosynthesis V
AFE_RS09610	PWY-6902	chitin degradation II
AFE_RS09635	PWY-3162	L-tryptophan degradation V (side chain pathway)
AFE_RS09635	PWY-5057	L-valine degradation II
AFE_RS09635	PWY-5076	L-leucine degradation III
AFE_RS09635	PWY-5078	L-isoleucine degradation II
AFE_RS09635	PWY-5079	L-phenylalanine degradation III
AFE_RS09635	PWY-5082	L-methionine degradation III
AFE_RS09635	PWY-5480	pyruvate fermentation to ethanol I
AFE_RS09635	PWY-5486	pyruvate fermentation to ethanol II
AFE_RS09635	PWY-5751	phenylethanol biosynthesis
AFE_RS09635	PWY-6313	serotonin degradation
AFE_RS09635	PWY-6333	acetaldehyde biosynthesis I
AFE_RS09635	PWY-6342	noradrenaline and adrenaline degradation
AFE_RS09635	PWY-6587	pyruvate fermentation to ethanol III
AFE_RS09635	PWY-6802	salidroside biosynthesis
AFE_RS09635	PWY-6871	3-methylbutanol biosynthesis
AFE_RS09635	PWY-7013	L-1,2-propanediol degradation
AFE_RS09635	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AFE_RS09635	PWY-7118	chitin degradation to ethanol
AFE_RS09635	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AFE_RS09725	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AFE_RS09775	PWY-5129	sphingolipid biosynthesis (plants)
AFE_RS09780	PWY-5152	leucodelphinidin biosynthesis
AFE_RS09780	PWY-5515	L-arabinose degradation II
AFE_RS09780	PWY-6693	galactose degradation IV
AFE_RS09790	PWY-6098	diploterol and cycloartenol biosynthesis
AFE_RS09790	PWY-7072	hopanoid biosynthesis (bacteria)
AFE_RS09800	PWY-5667	CDP-diacylglycerol biosynthesis I
AFE_RS09800	PWY-5981	CDP-diacylglycerol biosynthesis III
AFE_RS09895	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AFE_RS09940	PWY-5532	adenosine nucleotides degradation IV
AFE_RS09940	PWY-5723	Rubisco shunt
AFE_RS10035	PWY-43	putrescine biosynthesis II
AFE_RS10175	PWY-5316	nicotine biosynthesis
AFE_RS10175	PWY-5381	pyridine nucleotide cycling (plants)
AFE_RS10175	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFE_RS10175	PWY-7342	superpathway of nicotine biosynthesis
AFE_RS10250	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_RS10260	PWY-5941	glycogen degradation II (eukaryotic)
AFE_RS10375	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AFE_RS10405	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_RS10405	PWY-6124	inosine-5'-phosphate biosynthesis II
AFE_RS10405	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_RS10410	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_RS10410	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_RS10410	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_RS10420	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AFE_RS10420	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AFE_RS10425	PWY-5686	UMP biosynthesis
AFE_RS10490	PWY-7399	methylphosphonate degradation II
AFE_RS10505	PWY-7399	methylphosphonate degradation II
AFE_RS10515	PWY-7399	methylphosphonate degradation II
AFE_RS10520	PWY-7399	methylphosphonate degradation II
AFE_RS10525	PWY-5532	adenosine nucleotides degradation IV
AFE_RS10685	PWY-6749	CMP-legionaminate biosynthesis I
AFE_RS10755	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AFE_RS10815	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AFE_RS10815	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AFE_RS10815	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AFE_RS10820	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_RS10820	PWY-6124	inosine-5'-phosphate biosynthesis II
AFE_RS10820	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_RS10825	PWY-6123	inosine-5'-phosphate biosynthesis I
AFE_RS10825	PWY-6124	inosine-5'-phosphate biosynthesis II
AFE_RS10825	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS10825	PWY-7234	inosine-5'-phosphate biosynthesis III
AFE_RS10835	PWY-2941	L-lysine biosynthesis II
AFE_RS10835	PWY-2942	L-lysine biosynthesis III
AFE_RS10835	PWY-5097	L-lysine biosynthesis VI
AFE_RS10945	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AFE_RS10945	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AFE_RS10945	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AFE_RS10945	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AFE_RS10945	PWY-6978	plastoquinol-9 biosynthesis II
AFE_RS11295	PWY-3341	L-proline biosynthesis III
AFE_RS11295	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AFE_RS11375	PWY-5941	glycogen degradation II (eukaryotic)
AFE_RS11515	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
AFE_RS11515	PWY-5368	dimorphecolate biosynthesis
AFE_RS11515	PWY-5995	linoleate biosynthesis I (plants)
AFE_RS11515	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
AFE_RS11515	PWY-6803	phosphatidylcholine acyl editing
AFE_RS11515	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
AFE_RS11515	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AFE_RS11515	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AFE_RS11515	PWY-7470	phosphatidylcholine biosynthesis VII
AFE_RS11515	PWY-7618	ricinoleate biosynthesis
AFE_RS11555	PWY-43	putrescine biosynthesis II
AFE_RS11720	PWY-6823	molybdenum cofactor biosynthesis
AFE_RS11760	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_RS11760	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_RS11770	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFE_RS11770	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFE_RS11775	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AFE_RS11775	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AFE_RS11900	PWY-6871	3-methylbutanol biosynthesis
AFE_RS12080	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS12080	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS12080	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS12080	PWY-7003	glycerol degradation to butanol
AFE_RS12085	PWY-6749	CMP-legionaminate biosynthesis I
AFE_RS12090	PWY-6614	tetrahydrofolate biosynthesis
AFE_RS12105	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_RS12105	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS12105	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_RS12105	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_RS12105	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12105	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12105	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS12105	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFE_RS12110	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AFE_RS12110	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS12110	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AFE_RS12110	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AFE_RS12110	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12110	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12110	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AFE_RS12110	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AFE_RS12205	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12220	PWY-2941	L-lysine biosynthesis II
AFE_RS12220	PWY-2942	L-lysine biosynthesis III
AFE_RS12220	PWY-5097	L-lysine biosynthesis VI
AFE_RS12260	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_RS12260	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_RS12265	PWY-5392	reductive TCA cycle II
AFE_RS12265	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AFE_RS12265	PWY-5690	TCA cycle II (plants and fungi)
AFE_RS12265	PWY-5913	TCA cycle VI (obligate autotrophs)
AFE_RS12265	PWY-6728	methylaspartate cycle
AFE_RS12265	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AFE_RS12265	PWY-7254	TCA cycle VII (acetate-producers)
AFE_RS12265	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AFE_RS12290	PWY-622	starch biosynthesis
AFE_RS12470	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12470	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12470	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12475	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12475	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12475	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AFE_RS12525	PWY-3781	aerobic respiration I (cytochrome c)
AFE_RS12525	PWY-6692	Fe(II) oxidation
AFE_RS12525	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AFE_RS12525	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFE_RS12595	PWY-2941	L-lysine biosynthesis II
AFE_RS12595	PWY-5097	L-lysine biosynthesis VI
AFE_RS12645	PWY-6825	phosphatidylcholine biosynthesis V
AFE_RS12680	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_RS12695	PWY-7560	methylerythritol phosphate pathway II
AFE_RS12935	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_RS12965	PWY-6902	chitin degradation II
AFE_RS13000	PWY-6936	seleno-amino acid biosynthesis
AFE_RS13005	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFE_RS13005	PWY-6855	chitin degradation I (archaea)
AFE_RS13005	PWY-6906	chitin derivatives degradation
AFE_RS13020	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AFE_RS13020	PWY-622	starch biosynthesis
AFE_RS13030	PWY-622	starch biosynthesis
AFE_RS13050	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_RS13050	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_RS13105	PWY-6829	tRNA methylation (yeast)
AFE_RS13105	PWY-7285	methylwyosine biosynthesis
AFE_RS13105	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AFE_RS13405	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AFE_RS13405	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AFE_RS13410	PWY-3801	sucrose degradation II (sucrose synthase)
AFE_RS13410	PWY-5054	sorbitol biosynthesis I
AFE_RS13410	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AFE_RS13410	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFE_RS13410	PWY-5659	GDP-mannose biosynthesis
AFE_RS13410	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS13410	PWY-621	sucrose degradation III (sucrose invertase)
AFE_RS13410	PWY-622	starch biosynthesis
AFE_RS13410	PWY-6981	chitin biosynthesis
AFE_RS13410	PWY-6992	1,5-anhydrofructose degradation
AFE_RS13410	PWY-7238	sucrose biosynthesis II
AFE_RS13410	PWY-7347	sucrose biosynthesis III
AFE_RS13410	PWY-7385	1,3-propanediol biosynthesis (engineered)
AFE_RS13525	PWY-5381	pyridine nucleotide cycling (plants)
AFE_RS13525	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AFE_RS13535	PWY-6825	phosphatidylcholine biosynthesis V
AFE_RS13565	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AFE_RS13585	PWY-5659	GDP-mannose biosynthesis
AFE_RS13585	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AFE_RS13625	PWY-5278	sulfite oxidation III
AFE_RS13625	PWY-5340	sulfate activation for sulfonation
AFE_RS13625	PWY-6683	sulfate reduction III (assimilatory)
AFE_RS13625	PWY-6932	selenate reduction
AFE_RS13630	PWY-5278	sulfite oxidation III
AFE_RS13630	PWY-5340	sulfate activation for sulfonation
AFE_RS13630	PWY-6683	sulfate reduction III (assimilatory)
AFE_RS13630	PWY-6932	selenate reduction
AFE_RS13660	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AFE_RS13660	PWY-5739	GDP-D-perosamine biosynthesis
AFE_RS13660	PWY-5740	GDP-L-colitose biosynthesis
AFE_RS13660	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AFE_RS13660	PWY-7573	GDP-mycosamine biosynthesis
AFE_RS13880	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AFE_RS13880	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AFE_RS13935	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AFE_RS13935	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AFE_RS13995	PWY-5532	adenosine nucleotides degradation IV
AFE_RS13995	PWY-5723	Rubisco shunt
AFE_RS14000	PWY-5532	adenosine nucleotides degradation IV
AFE_RS14000	PWY-5723	Rubisco shunt
AFE_RS14020	PWY-5686	UMP biosynthesis
AFE_RS14025	PWY-5686	UMP biosynthesis
AFE_RS14090	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS14090	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS14160	PWY-5155	&beta;-alanine biosynthesis III
AFE_RS14195	PWY-702	L-methionine biosynthesis II
AFE_RS14310	PWY-6683	sulfate reduction III (assimilatory)
AFE_RS14315	PWY-6683	sulfate reduction III (assimilatory)
AFE_RS14325	PWY-5278	sulfite oxidation III
AFE_RS14325	PWY-5340	sulfate activation for sulfonation
AFE_RS14325	PWY-6683	sulfate reduction III (assimilatory)
AFE_RS14325	PWY-6932	selenate reduction
AFE_RS14330	PWY-5278	sulfite oxidation III
AFE_RS14330	PWY-5340	sulfate activation for sulfonation
AFE_RS14330	PWY-6683	sulfate reduction III (assimilatory)
AFE_RS14330	PWY-6932	selenate reduction
AFE_RS14335	PWY-5194	siroheme biosynthesis
AFE_RS14335	PWY-5441	S-methyl-L-methionine cycle
AFE_RS14335	PWY-702	L-methionine biosynthesis II
AFE_RS14335	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AFE_RS14340	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AFE_RS14425	PWY-3781	aerobic respiration I (cytochrome c)
AFE_RS14425	PWY-4521	arsenite oxidation I (respiratory)
AFE_RS14425	PWY-6692	Fe(II) oxidation
AFE_RS14425	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AFE_RS14480	PWY-3461	L-tyrosine biosynthesis II
AFE_RS14480	PWY-3462	L-phenylalanine biosynthesis II
AFE_RS14480	PWY-6120	L-tyrosine biosynthesis III
AFE_RS14480	PWY-6627	salinosporamide A biosynthesis
AFE_RS14480	PWY-7626	bacilysin biosynthesis
AFE_RS14525	PWY-5386	methylglyoxal degradation I
AFE_RS14665	PWY-6749	CMP-legionaminate biosynthesis I
AFE_RS14670	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AFE_RS14670	PWY-5667	CDP-diacylglycerol biosynthesis I
AFE_RS14670	PWY-6453	stigma estolide biosynthesis
AFE_RS14670	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AFE_RS14670	PWY-7587	oleate biosynthesis III (cyanobacteria)
AFE_RS14680	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS14690	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AFE_RS14780	PWY-7731	AFE_RS14780
AFE_RS14865	PWY-5958	acridone alkaloid biosynthesis
AFE_RS14865	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFE_RS14865	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFE_RS14870	PWY-5958	acridone alkaloid biosynthesis
AFE_RS14870	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AFE_RS14870	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AFE_RS14875	PWY-181	photorespiration
AFE_RS14880	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_RS14880	PWY-5723	Rubisco shunt
AFE_RS14885	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS14885	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_RS14885	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS14885	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS14885	PWY-7385	1,3-propanediol biosynthesis (engineered)
AFE_RS14890	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS14890	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AFE_RS14890	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS14890	PWY-5723	Rubisco shunt
AFE_RS14890	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AFE_RS14890	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS14890	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS14890	PWY-7003	glycerol degradation to butanol
AFE_RS14890	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AFE_RS14890	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AFE_RS14895	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS14895	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS14895	PWY-6886	1-butanol autotrophic biosynthesis
AFE_RS14895	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS14895	PWY-7003	glycerol degradation to butanol
AFE_RS14900	PWY-1042	glycolysis IV (plant cytosol)
AFE_RS14900	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS14900	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS14900	PWY-7003	glycerol degradation to butanol
AFE_RS14905	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AFE_RS14905	PWY-5723	Rubisco shunt
AFE_RS14905	PWY-6891	thiazole biosynthesis II (Bacillus)
AFE_RS14905	PWY-6892	thiazole biosynthesis I (E. coli)
AFE_RS14905	PWY-6901	superpathway of glucose and xylose degradation
AFE_RS14905	PWY-7560	methylerythritol phosphate pathway II
AFE_RS14910	PWY-5484	glycolysis II (from fructose 6-phosphate)
AFE_RS14925	PWY-2201	folate transformations I
AFE_RS15015	PWY-4983	L-citrulline-nitric oxide cycle
AFE_RS15015	PWY-4984	urea cycle
AFE_RS15015	PWY-5	canavanine biosynthesis
AFE_RS15015	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AFE_RS15015	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AFE_RS15025	PWY-2941	L-lysine biosynthesis II
AFE_RS15025	PWY-2942	L-lysine biosynthesis III
AFE_RS15025	PWY-5097	L-lysine biosynthesis VI
AFE_RS15090	PWY-5738	GDP-6-deoxy-D-talose biosynthesis
AFE_RS15090	PWY-5739	GDP-D-perosamine biosynthesis
AFE_RS15090	PWY-5740	GDP-L-colitose biosynthesis
AFE_RS15090	PWY-66	GDP-L-fucose biosynthesis I (from GDP-D-mannose)
AFE_RS15090	PWY-7573	GDP-mycosamine biosynthesis
AFE_RS15095	PWY-5659	GDP-mannose biosynthesis
AFE_RS15095	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AFE_RS15105	PWY-3221	dTDP-L-rhamnose biosynthesis II
AFE_RS15105	PWY-6808	dTDP-D-forosamine biosynthesis
AFE_RS15105	PWY-6942	dTDP-D-desosamine biosynthesis
AFE_RS15105	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AFE_RS15105	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AFE_RS15105	PWY-6974	dTDP-L-olivose biosynthesis
AFE_RS15105	PWY-6976	dTDP-L-mycarose biosynthesis
AFE_RS15105	PWY-7104	dTDP-L-megosamine biosynthesis
AFE_RS15105	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AFE_RS15105	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AFE_RS15105	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AFE_RS15105	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AFE_RS15105	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AFE_RS15105	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AFE_RS15105	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AFE_RS15105	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AFE_RS15105	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AFE_RS15105	PWY-7688	AFE_RS15105
AFE_RS15120	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_RS15120	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFE_RS15125	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_RS15125	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFE_RS15130	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_RS15130	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AFE_RS15145	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AFE_RS15150	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AFE_RS15150	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AFE_RS15150	PWY-6897	thiamin salvage II
AFE_RS15150	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AFE_RS15150	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AFE_RS15150	PWY-7356	thiamin salvage IV (yeast)
AFE_RS15150	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AFE_RS15340	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
