AFE_RS00005 SM00480 DNA polymerase III beta subunit AFE_RS00015 SM00387 Histidine kinase-like ATPases AFE_RS00015 SM00433 TopoisomeraseII AFE_RS00025 SM00972 Spore Coat Protein U domain AFE_RS00040 SM00972 Spore Coat Protein U domain AFE_RS00075 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_RS00075 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFE_RS00075 SM00493 AFE_RS00075 AFE_RS00090 SM00257 Lysin motif AFE_RS00115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_RS00115 SM00387 Histidine kinase-like ATPases AFE_RS00115 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS00120 SM00448 cheY-homologous receiver domain AFE_RS00125 SM00387 Histidine kinase-like ATPases AFE_RS00125 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS00130 SM00382 ATPases associated with a variety of cellular activities AFE_RS00130 SM00448 cheY-homologous receiver domain AFE_RS00135 SM00564 beta-propeller repeat AFE_RS00155 SM01234 AFE_RS00155 AFE_RS00170 SM00382 ATPases associated with a variety of cellular activities AFE_RS00215 SM00450 Rhodanese Homology Domain AFE_RS00220 SM00450 Rhodanese Homology Domain AFE_RS00265 SM00834 Putative regulatory protein AFE_RS00280 SM00563 Phosphate acyltransferases AFE_RS00295 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_RS00300 SM00382 ATPases associated with a variety of cellular activities AFE_RS00495 SM00382 ATPases associated with a variety of cellular activities AFE_RS00515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_RS00515 SM00387 Histidine kinase-like ATPases AFE_RS00515 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS00520 SM00448 cheY-homologous receiver domain AFE_RS00520 SM00862 Transcriptional regulatory protein, C terminal AFE_RS00560 SM00671 Sel1-like repeats. AFE_RS00570 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_RS00585 SM00028 Tetratricopeptide repeats AFE_RS00590 SM01207 AFE_RS00590 AFE_RS00595 SM00905 Dihydroneopterin aldolase AFE_RS00600 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS00625 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS00695 SM00450 Rhodanese Homology Domain AFE_RS00715 SM00855 Phosphoglycerate mutase family AFE_RS00730 SM00382 ATPases associated with a variety of cellular activities AFE_RS00755 SM00382 ATPases associated with a variety of cellular activities AFE_RS00770 SM00507 HNH nucleases AFE_RS00775 SM00650 Ribosomal RNA adenine dimethylases AFE_RS00790 SM00836 DALR anticodon binding domain AFE_RS00790 SM01016 Arginyl tRNA synthetase N terminal dom AFE_RS00855 SM00382 ATPases associated with a variety of cellular activities AFE_RS00860 SM00387 Histidine kinase-like ATPases AFE_RS00860 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS00865 SM00382 ATPases associated with a variety of cellular activities AFE_RS00865 SM00448 cheY-homologous receiver domain AFE_RS00915 SM00878 Biotin carboxylase C-terminal domain AFE_RS00940 SM00864 Tubulin/FtsZ family, GTPase domain AFE_RS00940 SM00865 Tubulin/FtsZ family, C-terminal domain AFE_RS00945 SM00842 Cell division protein FtsA AFE_RS01045 SM00957 SecA DEAD-like domain AFE_RS01045 SM00958 SecA preprotein cross-linking domain AFE_RS01175 SM00479 AFE_RS01175 AFE_RS01220 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS01220 SM00876 Biotin and Thiamin Synthesis associated domain AFE_RS01225 SM01152 AFE_RS01225 AFE_RS01245 SM00382 ATPases associated with a variety of cellular activities AFE_RS01270 SM00849 Metallo-beta-lactamase superfamily AFE_RS01275 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_RS01275 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_RS01285 SM01001 AIR carboxylase AFE_RS01315 SM00155 Phospholipase D. Active site motifs. AFE_RS01335 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFE_RS01360 SM00947 Carbonic anhydrase AFE_RS01435 SM00671 Sel1-like repeats. AFE_RS01485 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFE_RS01485 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFE_RS01490 SM00649 Ribosomal protein L11/L12 AFE_RS01515 SM00663 RNA polymerase I subunit A N-terminus AFE_RS01530 SM00838 Elongation factor G C-terminus AFE_RS01530 SM00889 Elongation factor G, domain IV AFE_RS01540 SM01403 AFE_RS01540 AFE_RS01560 SM01382 AFE_RS01560 AFE_RS01560 SM01383 AFE_RS01560 AFE_RS01575 SM00322 K homology RNA-binding domain AFE_RS01595 SM01374 AFE_RS01595 AFE_RS01600 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFE_RS01650 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_RS01665 SM00363 S4 RNA-binding domain AFE_RS01665 SM01390 AFE_RS01665 AFE_RS01670 SM00662 RNA polymerases D AFE_RS01700 SM00014 Acid phosphatase homologues AFE_RS01745 SM00487 DEAD-like helicases superfamily AFE_RS01745 SM00490 helicase superfamily c-terminal domain AFE_RS01745 SM00982 AFE_RS01745 AFE_RS01745 SM01058 CarD-like/TRCF domain AFE_RS01765 SM00422 helix_turn_helix, mercury resistance AFE_RS01770 SM00463 Small MutS-related domain AFE_RS01795 SM00382 ATPases associated with a variety of cellular activities AFE_RS01850 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_RS01870 SM01387 AFE_RS01870 AFE_RS01875 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_RS01875 SM00322 K homology RNA-binding domain AFE_RS01885 SM00849 Metallo-beta-lactamase superfamily AFE_RS01900 SM00479 AFE_RS01900 AFE_RS01905 SM00960 Roadblock/LC7 domain AFE_RS01945 SM00671 Sel1-like repeats. AFE_RS01985 SM00257 Lysin motif AFE_RS02000 SM01329 AFE_RS02000 AFE_RS02015 SM00881 CoA binding domain AFE_RS02025 SM00938 Nitrogen regulatory protein P-II AFE_RS02035 SM00363 S4 RNA-binding domain AFE_RS02060 SM01007 Class II Aldolase and Adducin N-terminal domain AFE_RS02110 SM00382 ATPases associated with a variety of cellular activities AFE_RS02110 SM00448 cheY-homologous receiver domain AFE_RS02120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_RS02120 SM00387 Histidine kinase-like ATPases AFE_RS02120 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS02175 SM00867 YceI-like domain AFE_RS02185 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFE_RS02185 SM01232 AFE_RS02185 AFE_RS02190 SM00450 Rhodanese Homology Domain AFE_RS02200 SM01230 AFE_RS02200 AFE_RS02255 SM00966 SpoVT / AbrB like domain AFE_RS02265 SM00937 AFE_RS02265 AFE_RS02280 SM00382 ATPases associated with a variety of cellular activities AFE_RS02410 SM00382 ATPases associated with a variety of cellular activities AFE_RS02435 SM00986 Uracil DNA glycosylase superfamily AFE_RS02435 SM00987 UreE urease accessory protein, C-terminal domain AFE_RS02445 SM00382 ATPases associated with a variety of cellular activities AFE_RS02445 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_RS02465 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_RS02465 SM00245 tail specific protease AFE_RS02490 SM00450 Rhodanese Homology Domain AFE_RS02510 SM00996 S-adenosyl-L-homocysteine hydrolase AFE_RS02510 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFE_RS02525 SM00014 Acid phosphatase homologues AFE_RS02550 SM00883 Chaperonin 10 Kd subunit AFE_RS02595 SM00382 ATPases associated with a variety of cellular activities AFE_RS02620 SM00904 Riboflavin kinase AFE_RS02645 SM00072 Guanylate kinase homologues. AFE_RS02650 SM01409 AFE_RS02650 AFE_RS02655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_RS02655 SM00954 Region found in RelA / SpoT proteins AFE_RS02670 SM00487 DEAD-like helicases superfamily AFE_RS02670 SM00490 helicase superfamily c-terminal domain AFE_RS02765 SM00487 DEAD-like helicases superfamily AFE_RS02765 SM00490 helicase superfamily c-terminal domain AFE_RS02770 SM00357 Cold shock protein domain AFE_RS02775 SM00487 DEAD-like helicases superfamily AFE_RS02775 SM00490 helicase superfamily c-terminal domain AFE_RS02800 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS02815 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_RS02815 SM01091 Transporter associated domain AFE_RS02835 SM00382 ATPases associated with a variety of cellular activities AFE_RS02900 SM00382 ATPases associated with a variety of cellular activities AFE_RS02905 SM00984 UDP binding domain AFE_RS02915 SM00855 Phosphoglycerate mutase family AFE_RS02925 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS03010 SM00851 MGS-like domain AFE_RS03010 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFE_RS03015 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFE_RS03050 SM00382 ATPases associated with a variety of cellular activities AFE_RS03060 SM00769 Water Stress and Hypersensitive response AFE_RS03090 SM00382 ATPases associated with a variety of cellular activities AFE_RS03105 SM00357 Cold shock protein domain AFE_RS03105 SM00382 ATPases associated with a variety of cellular activities AFE_RS03105 SM00959 Rho termination factor, N-terminal domain AFE_RS03115 SM00919 Malic enzyme, NAD binding domain AFE_RS03115 SM01274 AFE_RS03115 AFE_RS03155 SM00382 ATPases associated with a variety of cellular activities AFE_RS03230 SM00487 DEAD-like helicases superfamily AFE_RS03280 SM00382 ATPases associated with a variety of cellular activities AFE_RS03310 SM00382 ATPases associated with a variety of cellular activities AFE_RS03445 SM00563 Phosphate acyltransferases AFE_RS03465 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_RS03485 SM00965 Secretin and TonB N terminus short domain AFE_RS03525 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFE_RS03525 SM00534 ATPase domain of DNA mismatch repair MUTS family AFE_RS03585 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_RS03585 SM00292 breast cancer carboxy-terminal domain AFE_RS03585 SM00532 Ligase N family AFE_RS03655 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFE_RS03665 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFE_RS03730 SM00563 Phosphate acyltransferases AFE_RS03745 SM00822 AFE_RS03745 AFE_RS03760 SM00825 Beta-ketoacyl synthase AFE_RS03815 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFE_RS03820 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFE_RS03855 SM00831 Cation transporter/ATPase, N-terminus AFE_RS03925 SM00382 ATPases associated with a variety of cellular activities AFE_RS03940 SM00487 DEAD-like helicases superfamily AFE_RS03955 SM00487 DEAD-like helicases superfamily AFE_RS03955 SM00490 helicase superfamily c-terminal domain AFE_RS03960 SM00829 Enoylreductase AFE_RS03975 SM01192 AFE_RS03975 AFE_RS03975 SM01193 AFE_RS03975 AFE_RS03985 SM00841 Elongation factor P, C-terminal AFE_RS03985 SM01185 AFE_RS03985 AFE_RS03995 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_RS03995 SM00465 GIY-YIG type nucleases (URI domain) AFE_RS04015 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_RS04015 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_RS04025 SM01353 AFE_RS04025 AFE_RS04095 SM00382 ATPases associated with a variety of cellular activities AFE_RS04095 SM00464 Found in ATP-dependent protease La (LON) AFE_RS04195 SM00434 DNA Topoisomerase IV AFE_RS04210 SM00830 Chorismate mutase type II AFE_RS04240 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_RS04245 SM00411 bacterial (prokaryotic) histone like domain AFE_RS04255 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFE_RS04275 SM00382 ATPases associated with a variety of cellular activities AFE_RS04275 SM00994 ClpX C4-type zinc finger AFE_RS04275 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_RS04280 SM00382 ATPases associated with a variety of cellular activities AFE_RS04280 SM00464 Found in ATP-dependent protease La (LON) AFE_RS04285 SM00411 bacterial (prokaryotic) histone like domain AFE_RS04305 SM00014 Acid phosphatase homologues AFE_RS04335 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_RS04370 SM00382 ATPases associated with a variety of cellular activities AFE_RS04380 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFE_RS04420 SM00487 DEAD-like helicases superfamily AFE_RS04420 SM00490 helicase superfamily c-terminal domain AFE_RS04435 SM00382 ATPases associated with a variety of cellular activities AFE_RS04475 SM00849 Metallo-beta-lactamase superfamily AFE_RS04480 SM00382 ATPases associated with a variety of cellular activities AFE_RS04580 SM00960 Roadblock/LC7 domain AFE_RS04605 SM00382 ATPases associated with a variety of cellular activities AFE_RS04625 SM00481 DNA polymerase alpha chain like domain AFE_RS04645 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFE_RS04655 SM00849 Metallo-beta-lactamase superfamily AFE_RS04745 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_RS04745 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFE_RS04745 SM00493 AFE_RS04745 AFE_RS04790 SM00507 HNH nucleases AFE_RS04835 SM00857 Resolvase, N terminal domain AFE_RS04905 SM00382 ATPases associated with a variety of cellular activities AFE_RS05010 SM00411 bacterial (prokaryotic) histone like domain AFE_RS05020 SM00953 AFE_RS05020 AFE_RS05155 SM00966 SpoVT / AbrB like domain AFE_RS05180 SM00857 Resolvase, N terminal domain AFE_RS05430 SM00507 HNH nucleases AFE_RS05710 SM01043 Bacterial transcriptional activator domain AFE_RS05720 SM00869 Autotransporter beta-domain AFE_RS05725 SM00869 Autotransporter beta-domain AFE_RS05730 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AFE_RS05735 SM00028 Tetratricopeptide repeats AFE_RS05820 SM00052 Putative diguanylate phosphodiesterase AFE_RS05825 SM00292 breast cancer carboxy-terminal domain AFE_RS05825 SM00532 Ligase N family AFE_RS05885 SM00411 bacterial (prokaryotic) histone like domain AFE_RS05945 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFE_RS05965 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_RS06170 SM00422 helix_turn_helix, mercury resistance AFE_RS06170 SM00857 Resolvase, N terminal domain AFE_RS06280 SM00014 Acid phosphatase homologues AFE_RS06305 SM00984 UDP binding domain AFE_RS06380 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AFE_RS06400 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AFE_RS06405 SM00507 HNH nucleases AFE_RS06440 SM00487 DEAD-like helicases superfamily AFE_RS06440 SM00490 helicase superfamily c-terminal domain AFE_RS06450 SM00382 ATPases associated with a variety of cellular activities AFE_RS06470 SM00857 Resolvase, N terminal domain AFE_RS06490 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS06505 SM00897 FIST N domain AFE_RS06505 SM01204 AFE_RS06505 AFE_RS06510 SM00382 ATPases associated with a variety of cellular activities AFE_RS06515 SM00382 ATPases associated with a variety of cellular activities AFE_RS06550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_RS06555 SM00838 Elongation factor G C-terminus AFE_RS06570 SM00358 Double-stranded RNA binding motif AFE_RS06570 SM00535 Ribonuclease III family AFE_RS06595 SM00984 UDP binding domain AFE_RS06685 SM00422 helix_turn_helix, mercury resistance AFE_RS06690 SM00487 DEAD-like helicases superfamily AFE_RS06690 SM00490 helicase superfamily c-terminal domain AFE_RS06695 SM00448 cheY-homologous receiver domain AFE_RS06695 SM00862 Transcriptional regulatory protein, C terminal AFE_RS06700 SM00387 Histidine kinase-like ATPases AFE_RS06700 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS06720 SM00382 ATPases associated with a variety of cellular activities AFE_RS06775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_RS06785 SM00935 Outer membrane protein (OmpH-like) AFE_RS06825 SM00481 DNA polymerase alpha chain like domain AFE_RS06835 SM00977 TilS substrate C-terminal domain AFE_RS06865 SM00670 Large family of predicted nucleotide-binding domains AFE_RS06915 SM00893 Electron transfer flavoprotein domain AFE_RS06920 SM00893 Electron transfer flavoprotein domain AFE_RS06965 SM00382 ATPases associated with a variety of cellular activities AFE_RS07005 SM00382 ATPases associated with a variety of cellular activities AFE_RS07015 SM00834 Putative regulatory protein AFE_RS07020 SM00248 ankyrin repeats AFE_RS07020 SM00450 Rhodanese Homology Domain AFE_RS07140 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFE_RS07140 SM00382 ATPases associated with a variety of cellular activities AFE_RS07315 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS07325 SM00382 ATPases associated with a variety of cellular activities AFE_RS07360 SM00487 DEAD-like helicases superfamily AFE_RS07385 SM00411 bacterial (prokaryotic) histone like domain AFE_RS07390 SM00411 bacterial (prokaryotic) histone like domain AFE_RS07415 SM00563 Phosphate acyltransferases AFE_RS07460 SM00382 ATPases associated with a variety of cellular activities AFE_RS07465 SM00382 ATPases associated with a variety of cellular activities AFE_RS07560 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS07600 SM00382 ATPases associated with a variety of cellular activities AFE_RS07640 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_RS07695 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_RS07695 SM00419 helix_turn_helix, cAMP Regulatory protein AFE_RS07735 SM00861 Transketolase, pyrimidine binding domain AFE_RS07740 SM00346 helix_turn_helix isocitrate lyase regulation AFE_RS07790 SM00327 von Willebrand factor (vWF) type A domain AFE_RS07815 SM00877 AFE_RS07815 AFE_RS07820 SM00877 AFE_RS07820 AFE_RS07825 SM00877 AFE_RS07825 AFE_RS07850 SM00961 Ribulose bisphosphate carboxylase, small chain AFE_RS07965 SM00052 Putative diguanylate phosphodiesterase AFE_RS07965 SM00267 diguanylate cyclase AFE_RS07995 SM00470 ParB-like nuclease domain AFE_RS08020 SM00052 Putative diguanylate phosphodiesterase AFE_RS08020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFE_RS08020 SM00091 PAS domain AFE_RS08020 SM00267 diguanylate cyclase AFE_RS08065 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFE_RS08065 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFE_RS08065 SM00493 AFE_RS08065 AFE_RS08075 SM00155 Phospholipase D. Active site motifs. AFE_RS08080 SM00382 ATPases associated with a variety of cellular activities AFE_RS08135 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS08160 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFE_RS08160 SM00534 ATPase domain of DNA mismatch repair MUTS family AFE_RS08185 SM00479 AFE_RS08185 AFE_RS08195 SM00463 Small MutS-related domain AFE_RS08240 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_RS08240 SM01240 AFE_RS08240 AFE_RS08260 SM00966 SpoVT / AbrB like domain AFE_RS08270 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFE_RS08320 SM00363 S4 RNA-binding domain AFE_RS08325 SM00478 endonuclease III AFE_RS08355 SM01192 AFE_RS08355 AFE_RS08365 SM01133 AFE_RS08365 AFE_RS08405 SM00861 Transketolase, pyrimidine binding domain AFE_RS08535 SM00861 Transketolase, pyrimidine binding domain AFE_RS08560 SM00478 endonuclease III AFE_RS08665 SM00880 AFE_RS08665 AFE_RS08665 SM01118 AFE_RS08665 AFE_RS08725 SM00244 prohibitin homologues AFE_RS08730 SM00244 prohibitin homologues AFE_RS08740 SM00788 Adenylosuccinate synthetase AFE_RS08750 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_RS08750 SM00357 Cold shock protein domain AFE_RS08750 SM00955 AFE_RS08750 AFE_RS08765 SM00852 Probable molybdopterin binding domain AFE_RS08825 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFE_RS08830 SM00822 AFE_RS08830 AFE_RS08835 SM00823 Phosphopantetheine attachment site AFE_RS08840 SM00825 Beta-ketoacyl synthase AFE_RS08875 SM00382 ATPases associated with a variety of cellular activities AFE_RS08885 SM00493 AFE_RS08885 AFE_RS08905 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_RS08915 SM00853 MutL C terminal dimerisation domain AFE_RS08915 SM01340 AFE_RS08915 AFE_RS08925 SM00562 AFE_RS08925 AFE_RS08935 SM00028 Tetratricopeptide repeats AFE_RS08940 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS08960 SM00564 beta-propeller repeat AFE_RS09125 SM00382 ATPases associated with a variety of cellular activities AFE_RS09125 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_RS09145 SM00861 Transketolase, pyrimidine binding domain AFE_RS09180 SM00564 beta-propeller repeat AFE_RS09200 SM00831 Cation transporter/ATPase, N-terminus AFE_RS09205 SM00917 LeuA allosteric (dimerisation) domain AFE_RS09210 SM00344 helix_turn_helix ASNC type AFE_RS09235 SM00421 helix_turn_helix, Lux Regulon AFE_RS09300 SM00347 helix_turn_helix multiple antibiotic resistance protein AFE_RS09355 SM01350 AFE_RS09355 AFE_RS09365 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_RS09375 SM00434 DNA Topoisomerase IV AFE_RS09380 SM00387 Histidine kinase-like ATPases AFE_RS09380 SM00433 TopoisomeraseII AFE_RS09385 SM00387 Histidine kinase-like ATPases AFE_RS09385 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS09390 SM00448 cheY-homologous receiver domain AFE_RS09390 SM00862 Transcriptional regulatory protein, C terminal AFE_RS09495 SM01323 AFE_RS09495 AFE_RS09510 SM01091 Transporter associated domain AFE_RS09570 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFE_RS09575 SM01329 AFE_RS09575 AFE_RS09590 SM00852 Probable molybdopterin binding domain AFE_RS09605 SM00642 Alpha-amylase domain AFE_RS09610 SM00642 Alpha-amylase domain AFE_RS09700 SM00382 ATPases associated with a variety of cellular activities AFE_RS09720 SM00845 GatB domain AFE_RS09770 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS09860 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_RS09905 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS09950 SM00327 von Willebrand factor (vWF) type A domain AFE_RS09995 SM00382 ATPases associated with a variety of cellular activities AFE_RS10030 SM00363 S4 RNA-binding domain AFE_RS10040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFE_RS10080 SM00347 helix_turn_helix multiple antibiotic resistance protein AFE_RS10100 SM00382 ATPases associated with a variety of cellular activities AFE_RS10120 SM00341 Helicase and RNase D C-terminal AFE_RS10120 SM00487 DEAD-like helicases superfamily AFE_RS10120 SM00490 helicase superfamily c-terminal domain AFE_RS10120 SM00956 AFE_RS10120 AFE_RS10125 SM01219 AFE_RS10125 AFE_RS10235 SM00363 S4 RNA-binding domain AFE_RS10240 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_RS10245 SM00840 AFE_RS10245 AFE_RS10285 SM00448 cheY-homologous receiver domain AFE_RS10285 SM00862 Transcriptional regulatory protein, C terminal AFE_RS10290 SM00387 Histidine kinase-like ATPases AFE_RS10290 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS10330 SM00938 Nitrogen regulatory protein P-II AFE_RS10365 SM00564 beta-propeller repeat AFE_RS10380 SM00960 Roadblock/LC7 domain AFE_RS10385 SM00849 Metallo-beta-lactamase superfamily AFE_RS10405 SM00798 AICARFT/IMPCHase bienzyme AFE_RS10405 SM00851 MGS-like domain AFE_RS10410 SM01209 AFE_RS10410 AFE_RS10410 SM01210 AFE_RS10410 AFE_RS10455 SM00862 Transcriptional regulatory protein, C terminal AFE_RS10510 SM00382 ATPases associated with a variety of cellular activities AFE_RS10515 SM00382 ATPases associated with a variety of cellular activities AFE_RS10535 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFE_RS10535 SM00866 AFE_RS10535 AFE_RS10610 SM00862 Transcriptional regulatory protein, C terminal AFE_RS10640 SM00855 Phosphoglycerate mutase family AFE_RS10655 SM00387 Histidine kinase-like ATPases AFE_RS10655 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS10660 SM00448 cheY-homologous receiver domain AFE_RS10660 SM00862 Transcriptional regulatory protein, C terminal AFE_RS10665 SM00479 AFE_RS10665 AFE_RS10700 SM00831 Cation transporter/ATPase, N-terminus AFE_RS10730 SM00400 zinc finger AFE_RS10730 SM00493 AFE_RS10730 AFE_RS10735 SM00463 Small MutS-related domain AFE_RS10735 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFE_RS10735 SM00534 ATPase domain of DNA mismatch repair MUTS family AFE_RS10765 SM00100 Cyclic nucleotide-monophosphate binding domain AFE_RS10770 SM00464 Found in ATP-dependent protease La (LON) AFE_RS10775 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS10815 SM01211 AFE_RS10815 AFE_RS10825 SM00998 Adenylosuccinate lyase C-terminus AFE_RS10835 SM01130 AFE_RS10835 AFE_RS10850 SM00646 AFE_RS10850 AFE_RS10865 SM00450 Rhodanese Homology Domain AFE_RS10890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_RS10915 SM00487 DEAD-like helicases superfamily AFE_RS10915 SM00490 helicase superfamily c-terminal domain AFE_RS10940 SM00487 DEAD-like helicases superfamily AFE_RS11065 SM00487 DEAD-like helicases superfamily AFE_RS11085 SM00382 ATPases associated with a variety of cellular activities AFE_RS11120 SM00422 helix_turn_helix, mercury resistance AFE_RS11250 SM01126 AFE_RS11250 AFE_RS11285 SM00938 Nitrogen regulatory protein P-II AFE_RS11380 SM00422 helix_turn_helix, mercury resistance AFE_RS11490 SM00422 helix_turn_helix, mercury resistance AFE_RS11500 SM00671 Sel1-like repeats. AFE_RS11520 SM00487 DEAD-like helicases superfamily AFE_RS11520 SM00491 AFE_RS11520 AFE_RS11540 SM00899 AFE_RS11540 AFE_RS11600 SM00327 von Willebrand factor (vWF) type A domain AFE_RS11640 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS11655 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS11715 SM00450 Rhodanese Homology Domain AFE_RS11720 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS11760 SM00936 Penicillin-binding protein 5, C-terminal domain AFE_RS11775 SM00729 Elongator protein 3, MiaB family, Radical SAM AFE_RS11815 SM00960 Roadblock/LC7 domain AFE_RS11835 SM00563 Phosphate acyltransferases AFE_RS11870 SM00644 AFE_RS11870 AFE_RS11900 SM00917 LeuA allosteric (dimerisation) domain AFE_RS11905 SM00382 ATPases associated with a variety of cellular activities AFE_RS11935 SM00382 ATPases associated with a variety of cellular activities AFE_RS11950 SM00422 helix_turn_helix, mercury resistance AFE_RS11955 SM00411 bacterial (prokaryotic) histone like domain AFE_RS11960 SM00873 B3/4 domain AFE_RS11960 SM00874 tRNA synthetase B5 domain AFE_RS11960 SM00896 Ferredoxin-fold anticodon binding domain AFE_RS11985 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFE_RS12035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFE_RS12035 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFE_RS12040 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFE_RS12095 SM00382 ATPases associated with a variety of cellular activities AFE_RS12120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_RS12135 SM00849 Metallo-beta-lactamase superfamily AFE_RS12225 SM00271 DnaJ molecular chaperone homology domain AFE_RS12295 SM00849 Metallo-beta-lactamase superfamily AFE_RS12295 SM01027 Beta-Casp domain AFE_RS12305 SM00478 endonuclease III AFE_RS12310 SM00028 Tetratricopeptide repeats AFE_RS12325 SM00671 Sel1-like repeats. AFE_RS12355 SM00382 ATPases associated with a variety of cellular activities AFE_RS12365 SM00382 ATPases associated with a variety of cellular activities AFE_RS12410 SM00858 AFE_RS12410 AFE_RS12460 SM00028 Tetratricopeptide repeats AFE_RS12565 SM01103 AFE_RS12565 AFE_RS12615 SM00382 ATPases associated with a variety of cellular activities AFE_RS12615 SM01086 C-terminal, D2-small domain, of ClpB protein AFE_RS12635 SM00382 ATPases associated with a variety of cellular activities AFE_RS12640 SM00382 ATPases associated with a variety of cellular activities AFE_RS12640 SM00962 SRP54-type protein, GTPase domain AFE_RS12640 SM00963 SRP54-type protein, helical bundle domain AFE_RS12665 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFE_RS12665 SM01232 AFE_RS12665 AFE_RS12675 SM00937 AFE_RS12675 AFE_RS12685 SM00028 Tetratricopeptide repeats AFE_RS12705 SM01400 AFE_RS12705 AFE_RS12730 SM00966 SpoVT / AbrB like domain AFE_RS12810 SM00487 DEAD-like helicases superfamily AFE_RS12840 SM00974 AFE_RS12840 AFE_RS12845 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_RS12860 SM00342 helix_turn_helix, arabinose operon control protein AFE_RS12860 SM00478 endonuclease III AFE_RS12860 SM01009 AlkA N-terminal domain AFE_RS12920 SM01011 Aminopeptidase P, N-terminal domain AFE_RS12930 SM00382 ATPases associated with a variety of cellular activities AFE_RS12935 SM01005 Alanine racemase, C-terminal domain AFE_RS12940 SM00382 ATPases associated with a variety of cellular activities AFE_RS13010 SM00244 prohibitin homologues AFE_RS13020 SM00642 Alpha-amylase domain AFE_RS13085 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFE_RS13120 SM00382 ATPases associated with a variety of cellular activities AFE_RS13120 SM00962 SRP54-type protein, GTPase domain AFE_RS13120 SM00963 SRP54-type protein, helical bundle domain AFE_RS13135 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFE_RS13140 SM00226 Low molecular weight phosphatase family AFE_RS13150 SM00382 ATPases associated with a variety of cellular activities AFE_RS13220 SM00327 von Willebrand factor (vWF) type A domain AFE_RS13230 SM00986 Uracil DNA glycosylase superfamily AFE_RS13230 SM00987 UreE urease accessory protein, C-terminal domain AFE_RS13240 SM00966 SpoVT / AbrB like domain AFE_RS13255 SM00966 SpoVT / AbrB like domain AFE_RS13270 SM00382 ATPases associated with a variety of cellular activities AFE_RS13310 SM00382 ATPases associated with a variety of cellular activities AFE_RS13310 SM00448 cheY-homologous receiver domain AFE_RS13315 SM00091 PAS domain AFE_RS13315 SM00387 Histidine kinase-like ATPases AFE_RS13315 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS13335 SM00460 Transglutaminase/protease-like homologues AFE_RS13340 SM00763 PrkA AAA domain AFE_RS13365 SM00938 Nitrogen regulatory protein P-II AFE_RS13405 SM00936 Penicillin-binding protein 5, C-terminal domain AFE_RS13455 SM00382 ATPases associated with a variety of cellular activities AFE_RS13460 SM00862 Transcriptional regulatory protein, C terminal AFE_RS13505 SM00831 Cation transporter/ATPase, N-terminus AFE_RS13555 SM00316 Ribosomal protein S1-like RNA-binding domain AFE_RS13560 SM00382 ATPases associated with a variety of cellular activities AFE_RS13560 SM00448 cheY-homologous receiver domain AFE_RS13570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_RS13570 SM00387 Histidine kinase-like ATPases AFE_RS13570 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS13600 SM00382 ATPases associated with a variety of cellular activities AFE_RS13695 SM00382 ATPases associated with a variety of cellular activities AFE_RS13710 SM00382 ATPases associated with a variety of cellular activities AFE_RS13715 SM00382 ATPases associated with a variety of cellular activities AFE_RS13785 SM00822 AFE_RS13785 AFE_RS13785 SM00823 Phosphopantetheine attachment site AFE_RS13785 SM00825 Beta-ketoacyl synthase AFE_RS13785 SM00826 AFE_RS13785 AFE_RS13785 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFE_RS13785 SM00829 Enoylreductase AFE_RS13785 SM01294 AFE_RS13785 AFE_RS13815 SM00478 endonuclease III AFE_RS13865 SM00382 ATPases associated with a variety of cellular activities AFE_RS13885 SM00116 Domain in cystathionine beta-synthase and other proteins. AFE_RS14000 SM00961 Ribulose bisphosphate carboxylase, small chain AFE_RS14010 SM00327 von Willebrand factor (vWF) type A domain AFE_RS14015 SM00052 Putative diguanylate phosphodiesterase AFE_RS14015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFE_RS14015 SM00267 diguanylate cyclase AFE_RS14035 SM00732 Likely ribonuclease with RNase H fold. AFE_RS14070 SM00861 Transketolase, pyrimidine binding domain AFE_RS14090 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFE_RS14150 SM00363 S4 RNA-binding domain AFE_RS14155 SM00831 Cation transporter/ATPase, N-terminus AFE_RS14180 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFE_RS14180 SM00474 3'-5' exonuclease AFE_RS14180 SM00475 5'-3' exonuclease AFE_RS14180 SM00482 DNA polymerase A domain AFE_RS14210 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_RS14220 SM00271 DnaJ molecular chaperone homology domain AFE_RS14235 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFE_RS14235 SM00481 DNA polymerase alpha chain like domain AFE_RS14235 SM00483 DNA polymerase X family AFE_RS14375 SM00387 Histidine kinase-like ATPases AFE_RS14375 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS14380 SM00448 cheY-homologous receiver domain AFE_RS14385 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AFE_RS14460 SM00387 Histidine kinase-like ATPases AFE_RS14480 SM00830 Chorismate mutase type II AFE_RS14485 SM00382 ATPases associated with a variety of cellular activities AFE_RS14550 SM00382 ATPases associated with a variety of cellular activities AFE_RS14680 SM00382 ATPases associated with a variety of cellular activities AFE_RS14720 SM00470 ParB-like nuclease domain AFE_RS14735 SM01228 AFE_RS14735 AFE_RS14750 SM00852 Probable molybdopterin binding domain AFE_RS14825 SM00382 ATPases associated with a variety of cellular activities AFE_RS14900 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFE_RS14905 SM00861 Transketolase, pyrimidine binding domain AFE_RS15000 SM00448 cheY-homologous receiver domain AFE_RS15000 SM00862 Transcriptional regulatory protein, C terminal AFE_RS15005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFE_RS15005 SM00387 Histidine kinase-like ATPases AFE_RS15005 SM00388 His Kinase A (phosphoacceptor) domain AFE_RS15120 SM01004 Delta-aminolevulinic acid dehydratase AFE_RS15160 SM00822 AFE_RS15160 AFE_RS15165 SM00382 ATPases associated with a variety of cellular activities AFE_RS15165 SM00760 Bacterial dnaA protein helix-turn-helix domain AFE_RS15225 SM00530 Helix-turn-helix XRE-family like proteins AFE_RS15230 SM01040 BRO family, N-terminal domain AFE_RS15255 SM00028 Tetratricopeptide repeats AFE_RS15260 SM01040 BRO family, N-terminal domain AFE_RS15300 SM00986 Uracil DNA glycosylase superfamily AFE_RS15300 SM00987 UreE urease accessory protein, C-terminal domain AFE_RS15370 SM00052 Putative diguanylate phosphodiesterase AFE_RS15370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFE_RS15370 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFE_RS15370 SM00091 PAS domain AFE_RS15370 SM00267 diguanylate cyclase