AJS_RS00025 SM00052 Putative diguanylate phosphodiesterase AJS_RS00025 SM00091 PAS domain AJS_RS00025 SM00267 diguanylate cyclase AJS_RS00030 SM00346 helix_turn_helix isocitrate lyase regulation AJS_RS00060 SM00387 Histidine kinase-like ATPases AJS_RS00060 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS00060 SM00448 cheY-homologous receiver domain AJS_RS00065 SM00421 helix_turn_helix, Lux Regulon AJS_RS00065 SM00448 cheY-homologous receiver domain AJS_RS00095 SM00422 helix_turn_helix, mercury resistance AJS_RS00110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS00110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS00140 SM01228 AJS_RS00140 AJS_RS00165 SM00470 ParB-like nuclease domain AJS_RS00200 SM00342 helix_turn_helix, arabinose operon control protein AJS_RS00255 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS00255 SM00091 PAS domain AJS_RS00255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS00260 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS00350 SM00903 Flavin reductase like domain AJS_RS00425 SM00341 Helicase and RNase D C-terminal AJS_RS00425 SM00487 DEAD-like helicases superfamily AJS_RS00425 SM00490 helicase superfamily c-terminal domain AJS_RS00425 SM00956 AJS_RS00425 AJS_RS00445 SM00052 Putative diguanylate phosphodiesterase AJS_RS00445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AJS_RS00445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS00445 SM00091 PAS domain AJS_RS00445 SM00267 diguanylate cyclase AJS_RS00470 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AJS_RS00470 SM00382 ATPases associated with a variety of cellular activities AJS_RS00560 SM00346 helix_turn_helix isocitrate lyase regulation AJS_RS00605 SM00822 AJS_RS00605 AJS_RS00680 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AJS_RS00705 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AJS_RS00735 SM00382 ATPases associated with a variety of cellular activities AJS_RS00740 SM01018 B12 binding domain AJS_RS00785 SM00382 ATPases associated with a variety of cellular activities AJS_RS00790 SM00382 ATPases associated with a variety of cellular activities AJS_RS00800 SM00822 AJS_RS00800 AJS_RS00805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS00805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS00810 SM00382 ATPases associated with a variety of cellular activities AJS_RS00820 SM00938 Nitrogen regulatory protein P-II AJS_RS00850 SM00945 ProQ/FINO family AJS_RS00860 SM00871 Bacterial transcription activator, effector binding domain AJS_RS00885 SM01005 Alanine racemase, C-terminal domain AJS_RS00905 SM00382 ATPases associated with a variety of cellular activities AJS_RS00970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS00970 SM00387 Histidine kinase-like ATPases AJS_RS00970 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS00975 SM00448 cheY-homologous receiver domain AJS_RS00975 SM00862 Transcriptional regulatory protein, C terminal AJS_RS00995 SM00974 AJS_RS00995 AJS_RS01005 SM00342 helix_turn_helix, arabinose operon control protein AJS_RS01025 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS01025 SM00895 AJS_RS01025 AJS_RS01030 SM00382 ATPases associated with a variety of cellular activities AJS_RS01030 SM00989 AJS_RS01030 AJS_RS01120 SM00859 Semialdehyde dehydrogenase, NAD binding domain AJS_RS01145 SM00849 Metallo-beta-lactamase superfamily AJS_RS01150 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS01150 SM00895 AJS_RS01150 AJS_RS01160 SM00822 AJS_RS01160 AJS_RS01185 SM00845 GatB domain AJS_RS01225 SM00382 ATPases associated with a variety of cellular activities AJS_RS01235 SM00062 Bacterial periplasmic substrate-binding proteins AJS_RS01260 SM00382 ATPases associated with a variety of cellular activities AJS_RS01290 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS01290 SM00091 PAS domain AJS_RS01290 SM00267 diguanylate cyclase AJS_RS01325 SM00347 helix_turn_helix multiple antibiotic resistance protein AJS_RS01335 SM01004 Delta-aminolevulinic acid dehydratase AJS_RS01365 SM00936 Penicillin-binding protein 5, C-terminal domain AJS_RS01380 SM00838 Elongation factor G C-terminus AJS_RS01380 SM00889 Elongation factor G, domain IV AJS_RS01390 SM01403 AJS_RS01390 AJS_RS01410 SM01382 AJS_RS01410 AJS_RS01410 SM01383 AJS_RS01410 AJS_RS01425 SM00322 K homology RNA-binding domain AJS_RS01495 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS01545 SM00382 ATPases associated with a variety of cellular activities AJS_RS01565 SM00487 DEAD-like helicases superfamily AJS_RS01565 SM00490 helicase superfamily c-terminal domain AJS_RS01635 SM00346 helix_turn_helix isocitrate lyase regulation AJS_RS01725 SM00836 DALR anticodon binding domain AJS_RS01725 SM01016 Arginyl tRNA synthetase N terminal dom AJS_RS01745 SM00382 ATPases associated with a variety of cellular activities AJS_RS01760 SM00981 AJS_RS01760 AJS_RS01830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS01830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS01845 SM00830 Chorismate mutase type II AJS_RS01865 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS01865 SM00091 PAS domain AJS_RS01865 SM00267 diguanylate cyclase AJS_RS01870 SM00986 Uracil DNA glycosylase superfamily AJS_RS01870 SM00987 UreE urease accessory protein, C-terminal domain AJS_RS01890 SM00487 DEAD-like helicases superfamily AJS_RS01890 SM00490 helicase superfamily c-terminal domain AJS_RS01905 SM00880 AJS_RS01905 AJS_RS01905 SM01118 AJS_RS01905 AJS_RS01925 SM00420 helix_turn_helix, Deoxyribose operon repressor AJS_RS01925 SM01134 AJS_RS01925 AJS_RS01930 SM00382 ATPases associated with a variety of cellular activities AJS_RS01935 SM00382 ATPases associated with a variety of cellular activities AJS_RS01965 SM01374 AJS_RS01965 AJS_RS01970 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AJS_RS02030 SM00363 S4 RNA-binding domain AJS_RS02030 SM01390 AJS_RS02030 AJS_RS02035 SM00662 RNA polymerases D AJS_RS02050 SM00984 UDP binding domain AJS_RS02090 SM00749 bacterial OsmY and nodulation domain AJS_RS02105 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS02110 SM00382 ATPases associated with a variety of cellular activities AJS_RS02170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS02170 SM00387 Histidine kinase-like ATPases AJS_RS02175 SM00421 helix_turn_helix, Lux Regulon AJS_RS02175 SM00448 cheY-homologous receiver domain AJS_RS02190 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AJS_RS02215 SM00947 Carbonic anhydrase AJS_RS02250 SM00346 helix_turn_helix isocitrate lyase regulation AJS_RS02265 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AJS_RS02330 SM00382 ATPases associated with a variety of cellular activities AJS_RS02350 SM00382 ATPases associated with a variety of cellular activities AJS_RS02360 SM00382 ATPases associated with a variety of cellular activities AJS_RS02370 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS02370 SM00419 helix_turn_helix, cAMP Regulatory protein AJS_RS02375 SM00363 S4 RNA-binding domain AJS_RS02380 SM00387 Histidine kinase-like ATPases AJS_RS02405 SM00220 Serine/Threonine protein kinases, catalytic domain AJS_RS02420 SM00347 helix_turn_helix multiple antibiotic resistance protein AJS_RS02455 SM01119 AJS_RS02455 AJS_RS02460 SM00855 Phosphoglycerate mutase family AJS_RS02480 SM00905 Dihydroneopterin aldolase AJS_RS02570 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AJS_RS02585 SM00849 Metallo-beta-lactamase superfamily AJS_RS02615 SM00344 helix_turn_helix ASNC type AJS_RS02625 SM01091 Transporter associated domain AJS_RS02640 SM00825 Beta-ketoacyl synthase AJS_RS02660 SM00563 Phosphate acyltransferases AJS_RS02670 SM00450 Rhodanese Homology Domain AJS_RS02675 SM00257 Lysin motif AJS_RS02780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS02780 SM00387 Histidine kinase-like ATPases AJS_RS02780 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS02780 SM00448 cheY-homologous receiver domain AJS_RS02785 SM00421 helix_turn_helix, Lux Regulon AJS_RS02785 SM00448 cheY-homologous receiver domain AJS_RS02820 SM01321 AJS_RS02820 AJS_RS02840 SM00953 AJS_RS02840 AJS_RS02915 SM00382 ATPases associated with a variety of cellular activities AJS_RS02920 SM00382 ATPases associated with a variety of cellular activities AJS_RS03015 SM00382 ATPases associated with a variety of cellular activities AJS_RS03045 SM00062 Bacterial periplasmic substrate-binding proteins AJS_RS03050 SM00062 Bacterial periplasmic substrate-binding proteins AJS_RS03065 SM00382 ATPases associated with a variety of cellular activities AJS_RS03075 SM00344 helix_turn_helix ASNC type AJS_RS03095 SM00996 S-adenosyl-L-homocysteine hydrolase AJS_RS03095 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AJS_RS03165 SM00363 S4 RNA-binding domain AJS_RS03190 SM00387 Histidine kinase-like ATPases AJS_RS03190 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS03200 SM00271 DnaJ molecular chaperone homology domain AJS_RS03205 SM00344 helix_turn_helix ASNC type AJS_RS03230 SM00829 Enoylreductase AJS_RS03240 SM00387 Histidine kinase-like ATPases AJS_RS03240 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS03240 SM00448 cheY-homologous receiver domain AJS_RS03245 SM00138 Methyltransferase, chemotaxis proteins AJS_RS03255 SM00387 Histidine kinase-like ATPases AJS_RS03255 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS03255 SM00448 cheY-homologous receiver domain AJS_RS03260 SM00448 cheY-homologous receiver domain AJS_RS03285 SM01209 AJS_RS03285 AJS_RS03295 SM00382 ATPases associated with a variety of cellular activities AJS_RS03335 SM00382 ATPases associated with a variety of cellular activities AJS_RS03390 SM00855 Phosphoglycerate mutase family AJS_RS03455 SM00382 ATPases associated with a variety of cellular activities AJS_RS03460 SM00382 ATPases associated with a variety of cellular activities AJS_RS03495 SM00267 diguanylate cyclase AJS_RS03505 SM00883 Chaperonin 10 Kd subunit AJS_RS03575 SM00849 Metallo-beta-lactamase superfamily AJS_RS03635 SM01219 AJS_RS03635 AJS_RS03645 SM00842 Cell division protein FtsA AJS_RS03665 SM00965 Secretin and TonB N terminus short domain AJS_RS03675 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AJS_RS03685 SM00382 ATPases associated with a variety of cellular activities AJS_RS03695 SM01321 AJS_RS03695 AJS_RS03710 SM00062 Bacterial periplasmic substrate-binding proteins AJS_RS03710 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AJS_RS03720 SM00382 ATPases associated with a variety of cellular activities AJS_RS03735 SM00382 ATPases associated with a variety of cellular activities AJS_RS03770 SM00382 ATPases associated with a variety of cellular activities AJS_RS03915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AJS_RS03980 SM00957 SecA DEAD-like domain AJS_RS03980 SM00958 SecA preprotein cross-linking domain AJS_RS04025 SM00382 ATPases associated with a variety of cellular activities AJS_RS04135 SM00382 ATPases associated with a variety of cellular activities AJS_RS04145 SM00487 DEAD-like helicases superfamily AJS_RS04150 SM00487 DEAD-like helicases superfamily AJS_RS04150 SM00490 helicase superfamily c-terminal domain AJS_RS04160 SM00382 ATPases associated with a variety of cellular activities AJS_RS04205 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AJS_RS04225 SM01091 Transporter associated domain AJS_RS04240 SM00937 AJS_RS04240 AJS_RS04280 SM00382 ATPases associated with a variety of cellular activities AJS_RS04325 SM00978 AJS_RS04325 AJS_RS04385 SM01034 Sensors of blue-light using FAD AJS_RS04430 SM00382 ATPases associated with a variety of cellular activities AJS_RS04435 SM00382 ATPases associated with a variety of cellular activities AJS_RS04465 SM01400 AJS_RS04465 AJS_RS04485 SM00028 Tetratricopeptide repeats AJS_RS04490 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AJS_RS04490 SM01232 AJS_RS04490 AJS_RS04500 SM00478 endonuclease III AJS_RS04500 SM00525 AJS_RS04500 AJS_RS04600 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS04615 SM00331 Sigma factor PP2C-like phosphatases AJS_RS04615 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AJS_RS04620 SM00220 Serine/Threonine protein kinases, catalytic domain AJS_RS04655 SM00382 ATPases associated with a variety of cellular activities AJS_RS04660 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS04745 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS04750 SM00072 Guanylate kinase homologues. AJS_RS04755 SM01409 AJS_RS04755 AJS_RS04760 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AJS_RS04760 SM00954 Region found in RelA / SpoT proteins AJS_RS04780 SM01387 AJS_RS04780 AJS_RS04785 SM00316 Ribosomal protein S1-like RNA-binding domain AJS_RS04785 SM00322 K homology RNA-binding domain AJS_RS04790 SM00829 Enoylreductase AJS_RS04835 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AJS_RS04840 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AJS_RS04890 SM00382 ATPases associated with a variety of cellular activities AJS_RS04910 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AJS_RS04915 SM00853 MutL C terminal dimerisation domain AJS_RS04915 SM01340 AJS_RS04915 AJS_RS04940 SM00646 AJS_RS04940 AJS_RS04975 SM00052 Putative diguanylate phosphodiesterase AJS_RS04980 SM00052 Putative diguanylate phosphodiesterase AJS_RS05010 SM01192 AJS_RS05010 AJS_RS05010 SM01193 AJS_RS05010 AJS_RS05050 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AJS_RS05065 SM00849 Metallo-beta-lactamase superfamily AJS_RS05075 SM01130 AJS_RS05075 AJS_RS05090 SM00387 Histidine kinase-like ATPases AJS_RS05090 SM00433 TopoisomeraseII AJS_RS05100 SM00434 DNA Topoisomerase IV AJS_RS05105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS05105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS05185 SM00450 Rhodanese Homology Domain AJS_RS05210 SM00861 Transketolase, pyrimidine binding domain AJS_RS05240 SM00448 cheY-homologous receiver domain AJS_RS05240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AJS_RS05265 SM00829 Enoylreductase AJS_RS05275 SM00852 Probable molybdopterin binding domain AJS_RS05310 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS05310 SM00419 helix_turn_helix, cAMP Regulatory protein AJS_RS05315 SM00448 cheY-homologous receiver domain AJS_RS05315 SM00862 Transcriptional regulatory protein, C terminal AJS_RS05320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS05320 SM00387 Histidine kinase-like ATPases AJS_RS05320 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS05345 SM00382 ATPases associated with a variety of cellular activities AJS_RS05400 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS05400 SM00895 AJS_RS05400 AJS_RS05475 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS05475 SM00419 helix_turn_helix, cAMP Regulatory protein AJS_RS05480 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS05525 SM00382 ATPases associated with a variety of cellular activities AJS_RS05580 SM00347 helix_turn_helix multiple antibiotic resistance protein AJS_RS05585 SM00919 Malic enzyme, NAD binding domain AJS_RS05585 SM01274 AJS_RS05585 AJS_RS05615 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS05615 SM00895 AJS_RS05615 AJS_RS05625 SM01329 AJS_RS05625 AJS_RS05660 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS05660 SM00895 AJS_RS05660 AJS_RS05685 SM00487 DEAD-like helicases superfamily AJS_RS05685 SM00490 helicase superfamily c-terminal domain AJS_RS05705 SM00382 ATPases associated with a variety of cellular activities AJS_RS05710 SM00710 Parallel beta-helix repeats AJS_RS05710 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AJS_RS05715 SM00900 AJS_RS05715 AJS_RS05745 SM00528 Domain in histone-like proteins of HNS family AJS_RS05765 SM00448 cheY-homologous receiver domain AJS_RS05765 SM00850 LytTr DNA-binding domain AJS_RS05790 SM00267 diguanylate cyclase AJS_RS05815 SM00267 diguanylate cyclase AJS_RS05820 SM00829 Enoylreductase AJS_RS05835 SM00257 Lysin motif AJS_RS05840 SM00363 S4 RNA-binding domain AJS_RS05850 SM00363 S4 RNA-binding domain AJS_RS05855 SM00562 AJS_RS05855 AJS_RS05865 SM00028 Tetratricopeptide repeats AJS_RS05890 SM00564 beta-propeller repeat AJS_RS05910 SM00244 prohibitin homologues AJS_RS05915 SM00244 prohibitin homologues AJS_RS05930 SM00788 Adenylosuccinate synthetase AJS_RS05990 SM00852 Probable molybdopterin binding domain AJS_RS05995 SM01230 AJS_RS05995 AJS_RS06005 SM00387 Histidine kinase-like ATPases AJS_RS06005 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS06010 SM00382 ATPases associated with a variety of cellular activities AJS_RS06010 SM00448 cheY-homologous receiver domain AJS_RS06100 SM00382 ATPases associated with a variety of cellular activities AJS_RS06100 SM00994 ClpX C4-type zinc finger AJS_RS06100 SM01086 C-terminal, D2-small domain, of ClpB protein AJS_RS06105 SM00382 ATPases associated with a variety of cellular activities AJS_RS06105 SM00464 Found in ATP-dependent protease La (LON) AJS_RS06125 SM00382 ATPases associated with a variety of cellular activities AJS_RS06130 SM00382 ATPases associated with a variety of cellular activities AJS_RS06145 SM00342 helix_turn_helix, arabinose operon control protein AJS_RS06220 SM00448 cheY-homologous receiver domain AJS_RS06220 SM00862 Transcriptional regulatory protein, C terminal AJS_RS06250 SM00014 Acid phosphatase homologues AJS_RS06265 SM00966 SpoVT / AbrB like domain AJS_RS06370 SM00382 ATPases associated with a variety of cellular activities AJS_RS06435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS06440 SM00226 Low molecular weight phosphatase family AJS_RS06460 SM00487 DEAD-like helicases superfamily AJS_RS06545 SM00422 helix_turn_helix, mercury resistance AJS_RS06590 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AJS_RS06590 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AJS_RS06590 SM00493 AJS_RS06590 AJS_RS06715 SM00422 helix_turn_helix, mercury resistance AJS_RS06745 SM00382 ATPases associated with a variety of cellular activities AJS_RS06785 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS06830 SM00448 cheY-homologous receiver domain AJS_RS06830 SM00862 Transcriptional regulatory protein, C terminal AJS_RS06835 SM00387 Histidine kinase-like ATPases AJS_RS06835 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS06855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS06855 SM00450 Rhodanese Homology Domain AJS_RS06895 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS06905 SM00422 helix_turn_helix, mercury resistance AJS_RS06915 SM00829 Enoylreductase AJS_RS06960 SM00822 AJS_RS06960 AJS_RS06985 SM00953 AJS_RS06985 AJS_RS07125 SM00487 DEAD-like helicases superfamily AJS_RS07175 SM00507 HNH nucleases AJS_RS07250 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AJS_RS07250 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AJS_RS07250 SM00493 AJS_RS07250 AJS_RS07325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS07325 SM00387 Histidine kinase-like ATPases AJS_RS07325 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS07330 SM00448 cheY-homologous receiver domain AJS_RS07330 SM00862 Transcriptional regulatory protein, C terminal AJS_RS07355 SM00746 metallochaperone-like domain AJS_RS07380 SM00422 helix_turn_helix, mercury resistance AJS_RS07470 SM00382 ATPases associated with a variety of cellular activities AJS_RS07515 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AJS_RS07520 SM01400 AJS_RS07520 AJS_RS07525 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AJS_RS07530 SM00849 Metallo-beta-lactamase superfamily AJS_RS07530 SM01027 Beta-Casp domain AJS_RS07720 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS07765 SM00778 Zinc-binding domain of primase-helicase AJS_RS07880 SM00490 helicase superfamily c-terminal domain AJS_RS07905 SM00953 AJS_RS07905 AJS_RS07935 SM00411 bacterial (prokaryotic) histone like domain AJS_RS07945 SM00470 ParB-like nuclease domain AJS_RS07985 SM00528 Domain in histone-like proteins of HNS family AJS_RS08090 SM00344 helix_turn_helix ASNC type AJS_RS08120 SM00028 Tetratricopeptide repeats AJS_RS08125 SM00840 AJS_RS08125 AJS_RS08130 SM00478 endonuclease III AJS_RS08200 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS08210 SM00363 S4 RNA-binding domain AJS_RS08215 SM00387 Histidine kinase-like ATPases AJS_RS08215 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS08220 SM00448 cheY-homologous receiver domain AJS_RS08220 SM00862 Transcriptional regulatory protein, C terminal AJS_RS08250 SM00450 Rhodanese Homology Domain AJS_RS08260 SM00450 Rhodanese Homology Domain AJS_RS08280 SM00831 Cation transporter/ATPase, N-terminus AJS_RS08295 SM00116 Domain in cystathionine beta-synthase and other proteins. AJS_RS08350 SM00116 Domain in cystathionine beta-synthase and other proteins. AJS_RS08415 SM00382 ATPases associated with a variety of cellular activities AJS_RS08420 SM00382 ATPases associated with a variety of cellular activities AJS_RS08435 SM00267 diguanylate cyclase AJS_RS08455 SM00382 ATPases associated with a variety of cellular activities AJS_RS08460 SM00062 Bacterial periplasmic substrate-binding proteins AJS_RS08490 SM00829 Enoylreductase AJS_RS08540 SM00316 Ribosomal protein S1-like RNA-binding domain AJS_RS08540 SM00732 Likely ribonuclease with RNase H fold. AJS_RS08555 SM00091 PAS domain AJS_RS08555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS08610 SM00248 ankyrin repeats AJS_RS08615 SM00382 ATPases associated with a variety of cellular activities AJS_RS08630 SM00028 Tetratricopeptide repeats AJS_RS08675 SM00382 ATPases associated with a variety of cellular activities AJS_RS08715 SM00849 Metallo-beta-lactamase superfamily AJS_RS08735 SM00852 Probable molybdopterin binding domain AJS_RS08745 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS08795 SM00260 Two component signalling adaptor domain AJS_RS08810 SM00938 Nitrogen regulatory protein P-II AJS_RS08865 SM00917 LeuA allosteric (dimerisation) domain AJS_RS08870 SM00917 LeuA allosteric (dimerisation) domain AJS_RS08880 SM00346 helix_turn_helix isocitrate lyase regulation AJS_RS08895 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS08895 SM00419 helix_turn_helix, cAMP Regulatory protein AJS_RS08940 SM00287 Bacterial SH3 domain homologues AJS_RS09020 SM00857 Resolvase, N terminal domain AJS_RS09030 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS09065 SM00382 ATPases associated with a variety of cellular activities AJS_RS09110 SM00861 Transketolase, pyrimidine binding domain AJS_RS09135 SM00331 Sigma factor PP2C-like phosphatases AJS_RS09135 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AJS_RS09140 SM00487 DEAD-like helicases superfamily AJS_RS09140 SM00491 AJS_RS09140 AJS_RS09150 SM00481 DNA polymerase alpha chain like domain AJS_RS09160 SM00382 ATPases associated with a variety of cellular activities AJS_RS09160 SM01086 C-terminal, D2-small domain, of ClpB protein AJS_RS09180 SM00382 ATPases associated with a variety of cellular activities AJS_RS09190 SM00479 AJS_RS09190 AJS_RS09200 SM00382 ATPases associated with a variety of cellular activities AJS_RS09250 SM00422 helix_turn_helix, mercury resistance AJS_RS09270 SM00382 ATPases associated with a variety of cellular activities AJS_RS09435 SM00829 Enoylreductase AJS_RS09450 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AJS_RS09470 SM00382 ATPases associated with a variety of cellular activities AJS_RS09485 SM01209 AJS_RS09485 AJS_RS09485 SM01210 AJS_RS09485 AJS_RS09510 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS09510 SM00419 helix_turn_helix, cAMP Regulatory protein AJS_RS09560 SM00316 Ribosomal protein S1-like RNA-binding domain AJS_RS09660 SM00091 PAS domain AJS_RS09660 SM00387 Histidine kinase-like ATPases AJS_RS09660 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS09660 SM00448 cheY-homologous receiver domain AJS_RS09700 SM00344 helix_turn_helix ASNC type AJS_RS09720 SM00342 helix_turn_helix, arabinose operon control protein AJS_RS09725 SM00382 ATPases associated with a variety of cellular activities AJS_RS09745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS09745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS09750 SM00387 Histidine kinase-like ATPases AJS_RS09750 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS09755 SM00448 cheY-homologous receiver domain AJS_RS09755 SM00862 Transcriptional regulatory protein, C terminal AJS_RS09775 SM01144 AJS_RS09775 AJS_RS09780 SM01060 AJS_RS09780 AJS_RS09790 SM00091 PAS domain AJS_RS09790 SM00421 helix_turn_helix, Lux Regulon AJS_RS09795 SM00882 Coenzyme A transferase AJS_RS09800 SM00882 Coenzyme A transferase AJS_RS09810 SM01126 AJS_RS09810 AJS_RS09825 SM00481 DNA polymerase alpha chain like domain AJS_RS09830 SM00671 Sel1-like repeats. AJS_RS09890 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AJS_RS09895 SM00267 diguanylate cyclase AJS_RS09945 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AJS_RS09960 SM01130 AJS_RS09960 AJS_RS09970 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS09970 SM00895 AJS_RS09970 AJS_RS09975 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AJS_RS09985 SM00858 AJS_RS09985 AJS_RS10050 SM00116 Domain in cystathionine beta-synthase and other proteins. AJS_RS10070 SM00052 Putative diguanylate phosphodiesterase AJS_RS10070 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS10070 SM00091 PAS domain AJS_RS10070 SM00267 diguanylate cyclase AJS_RS10085 SM00342 helix_turn_helix, arabinose operon control protein AJS_RS10085 SM00478 endonuclease III AJS_RS10085 SM01009 AlkA N-terminal domain AJS_RS10120 SM00450 Rhodanese Homology Domain AJS_RS10165 SM00344 helix_turn_helix ASNC type AJS_RS10180 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS10180 SM00895 AJS_RS10180 AJS_RS10190 SM00382 ATPases associated with a variety of cellular activities AJS_RS10200 SM00878 Biotin carboxylase C-terminal domain AJS_RS10210 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS10210 SM00876 Biotin and Thiamin Synthesis associated domain AJS_RS10215 SM00822 AJS_RS10215 AJS_RS10255 SM00354 helix_turn _helix lactose operon repressor AJS_RS10290 SM00052 Putative diguanylate phosphodiesterase AJS_RS10290 SM00091 PAS domain AJS_RS10290 SM00267 diguanylate cyclase AJS_RS10290 SM01079 AJS_RS10290 AJS_RS10295 SM00954 Region found in RelA / SpoT proteins AJS_RS10310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS10310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS10340 SM00382 ATPases associated with a variety of cellular activities AJS_RS10345 SM00822 AJS_RS10345 AJS_RS10400 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AJS_RS10400 SM00292 breast cancer carboxy-terminal domain AJS_RS10400 SM00532 Ligase N family AJS_RS10410 SM00771 ZipA, C-terminal domain (FtsZ-binding) AJS_RS10425 SM00052 Putative diguanylate phosphodiesterase AJS_RS10425 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS10425 SM00091 PAS domain AJS_RS10425 SM00267 diguanylate cyclase AJS_RS10425 SM01079 AJS_RS10425 AJS_RS10430 SM00382 ATPases associated with a variety of cellular activities AJS_RS10470 SM00829 Enoylreductase AJS_RS10545 SM00062 Bacterial periplasmic substrate-binding proteins AJS_RS10610 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS10610 SM00091 PAS domain AJS_RS10610 SM00387 Histidine kinase-like ATPases AJS_RS10610 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS10615 SM00421 helix_turn_helix, Lux Regulon AJS_RS10615 SM00448 cheY-homologous receiver domain AJS_RS10680 SM00479 AJS_RS10680 AJS_RS10695 SM00271 DnaJ molecular chaperone homology domain AJS_RS10740 SM00487 DEAD-like helicases superfamily AJS_RS10740 SM00490 helicase superfamily c-terminal domain AJS_RS10750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS10750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS10815 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AJS_RS10855 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS10975 SM00487 DEAD-like helicases superfamily AJS_RS10975 SM00490 helicase superfamily c-terminal domain AJS_RS11000 SM00490 helicase superfamily c-terminal domain AJS_RS11010 SM00155 Phospholipase D. Active site motifs. AJS_RS11055 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS11075 SM00028 Tetratricopeptide repeats AJS_RS11085 SM00487 DEAD-like helicases superfamily AJS_RS11145 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AJS_RS11145 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AJS_RS11145 SM00493 AJS_RS11145 AJS_RS11195 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS11240 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS11260 SM00248 ankyrin repeats AJS_RS11320 SM00967 RNA 2'-O ribose methyltransferase substrate binding AJS_RS11330 SM00382 ATPases associated with a variety of cellular activities AJS_RS11350 SM00749 bacterial OsmY and nodulation domain AJS_RS11360 SM00267 diguanylate cyclase AJS_RS11440 SM01211 AJS_RS11440 AJS_RS11450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AJS_RS11475 SM01329 AJS_RS11475 AJS_RS11535 SM00870 AJS_RS11535 AJS_RS11555 SM00382 ATPases associated with a variety of cellular activities AJS_RS11555 SM00487 DEAD-like helicases superfamily AJS_RS11555 SM00490 helicase superfamily c-terminal domain AJS_RS11555 SM00847 Helicase associated domain (HA2) Add an annotation AJS_RS11560 SM00858 AJS_RS11560 AJS_RS11595 SM00382 ATPases associated with a variety of cellular activities AJS_RS11605 SM00248 ankyrin repeats AJS_RS11665 SM00382 ATPases associated with a variety of cellular activities AJS_RS11715 SM00382 ATPases associated with a variety of cellular activities AJS_RS11715 SM00930 AJS_RS11715 AJS_RS11730 SM00493 AJS_RS11730 AJS_RS11740 SM00382 ATPases associated with a variety of cellular activities AJS_RS11780 SM00357 Cold shock protein domain AJS_RS11780 SM00382 ATPases associated with a variety of cellular activities AJS_RS11780 SM00959 Rho termination factor, N-terminal domain AJS_RS11795 SM00382 ATPases associated with a variety of cellular activities AJS_RS11820 SM00091 PAS domain AJS_RS11820 SM00387 Histidine kinase-like ATPases AJS_RS11820 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS11825 SM00448 cheY-homologous receiver domain AJS_RS11825 SM00862 Transcriptional regulatory protein, C terminal AJS_RS11835 SM00382 ATPases associated with a variety of cellular activities AJS_RS11855 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AJS_RS11875 SM00855 Phosphoglycerate mutase family AJS_RS11890 SM00052 Putative diguanylate phosphodiesterase AJS_RS11890 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS11890 SM00091 PAS domain AJS_RS11890 SM00267 diguanylate cyclase AJS_RS11905 SM00382 ATPases associated with a variety of cellular activities AJS_RS11915 SM01103 AJS_RS11915 AJS_RS11940 SM00851 MGS-like domain AJS_RS11940 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AJS_RS11950 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AJS_RS11960 SM00422 helix_turn_helix, mercury resistance AJS_RS11965 SM00411 bacterial (prokaryotic) histone like domain AJS_RS11970 SM00873 B3/4 domain AJS_RS11970 SM00874 tRNA synthetase B5 domain AJS_RS11970 SM00896 Ferredoxin-fold anticodon binding domain AJS_RS11995 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AJS_RS12015 SM00151 SWI complex, BAF60b domains AJS_RS12090 SM00344 helix_turn_helix ASNC type AJS_RS12115 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AJS_RS12125 SM00488 AJS_RS12125 AJS_RS12125 SM00491 AJS_RS12125 AJS_RS12130 SM00990 AJS_RS12130 AJS_RS12135 SM01126 AJS_RS12135 AJS_RS12140 SM00448 cheY-homologous receiver domain AJS_RS12140 SM00862 Transcriptional regulatory protein, C terminal AJS_RS12145 SM00387 Histidine kinase-like ATPases AJS_RS12145 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS12155 SM00849 Metallo-beta-lactamase superfamily AJS_RS12160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS12195 SM00825 Beta-ketoacyl synthase AJS_RS12205 SM00382 ATPases associated with a variety of cellular activities AJS_RS12230 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS12280 SM00434 DNA Topoisomerase IV AJS_RS12290 SM00830 Chorismate mutase type II AJS_RS12305 SM00316 Ribosomal protein S1-like RNA-binding domain AJS_RS12310 SM00411 bacterial (prokaryotic) histone like domain AJS_RS12320 SM00028 Tetratricopeptide repeats AJS_RS12450 SM00671 Sel1-like repeats. AJS_RS12465 SM00318 Staphylococcal nuclease homologues AJS_RS12525 SM00382 ATPases associated with a variety of cellular activities AJS_RS12530 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS12540 SM00226 Low molecular weight phosphatase family AJS_RS12570 SM00822 AJS_RS12570 AJS_RS12580 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AJS_RS12600 SM00974 AJS_RS12600 AJS_RS12605 SM00487 DEAD-like helicases superfamily AJS_RS12700 SM00116 Domain in cystathionine beta-synthase and other proteins. AJS_RS12700 SM01240 AJS_RS12700 AJS_RS12770 SM00316 Ribosomal protein S1-like RNA-binding domain AJS_RS12770 SM00322 K homology RNA-binding domain AJS_RS12800 SM00316 Ribosomal protein S1-like RNA-binding domain AJS_RS12800 SM00357 Cold shock protein domain AJS_RS12800 SM00955 AJS_RS12800 AJS_RS12850 SM00935 Outer membrane protein (OmpH-like) AJS_RS12930 SM00422 helix_turn_helix, mercury resistance AJS_RS13005 SM00382 ATPases associated with a variety of cellular activities AJS_RS13010 SM00487 DEAD-like helicases superfamily AJS_RS13010 SM00490 helicase superfamily c-terminal domain AJS_RS13015 SM00631 AJS_RS13015 AJS_RS13065 SM00487 DEAD-like helicases superfamily AJS_RS13095 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AJS_RS13095 SM00465 GIY-YIG type nucleases (URI domain) AJS_RS13160 SM00470 ParB-like nuclease domain AJS_RS13315 SM00422 helix_turn_helix, mercury resistance AJS_RS13340 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AJS_RS13380 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AJS_RS13385 SM01400 AJS_RS13385 AJS_RS13390 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AJS_RS13395 SM00849 Metallo-beta-lactamase superfamily AJS_RS13395 SM01027 Beta-Casp domain AJS_RS13435 SM00422 helix_turn_helix, mercury resistance AJS_RS13490 SM00746 metallochaperone-like domain AJS_RS13565 SM00448 cheY-homologous receiver domain AJS_RS13565 SM00862 Transcriptional regulatory protein, C terminal AJS_RS13570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS13570 SM00387 Histidine kinase-like ATPases AJS_RS13570 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS13715 SM01207 AJS_RS13715 AJS_RS13740 SM00937 AJS_RS13740 AJS_RS13775 SM00244 prohibitin homologues AJS_RS13855 SM00387 Histidine kinase-like ATPases AJS_RS13860 SM00448 cheY-homologous receiver domain AJS_RS13885 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS13915 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS13915 SM00866 AJS_RS13915 AJS_RS13955 SM00829 Enoylreductase AJS_RS13975 SM01126 AJS_RS13975 AJS_RS14000 SM00893 Electron transfer flavoprotein domain AJS_RS14005 SM00893 Electron transfer flavoprotein domain AJS_RS14025 SM00382 ATPases associated with a variety of cellular activities AJS_RS14035 SM00460 Transglutaminase/protease-like homologues AJS_RS14075 SM00382 ATPases associated with a variety of cellular activities AJS_RS14105 SM01012 AJS_RS14105 AJS_RS14120 SM00382 ATPases associated with a variety of cellular activities AJS_RS14125 SM00116 Domain in cystathionine beta-synthase and other proteins. AJS_RS14160 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AJS_RS14220 SM00382 ATPases associated with a variety of cellular activities AJS_RS14230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS14255 SM01329 AJS_RS14255 AJS_RS14330 SM00841 Elongation factor P, C-terminal AJS_RS14330 SM01185 AJS_RS14330 AJS_RS14495 SM00382 ATPases associated with a variety of cellular activities AJS_RS14655 SM00470 ParB-like nuclease domain AJS_RS14730 SM00360 RNA recognition motif AJS_RS14765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS14785 SM00422 helix_turn_helix, mercury resistance AJS_RS14835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS14975 SM00984 UDP binding domain AJS_RS15115 SM00421 helix_turn_helix, Lux Regulon AJS_RS15120 SM00974 AJS_RS15120 AJS_RS15135 SM00382 ATPases associated with a variety of cellular activities AJS_RS15150 SM00226 Low molecular weight phosphatase family AJS_RS15155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS15165 SM00382 ATPases associated with a variety of cellular activities AJS_RS15245 SM00823 Phosphopantetheine attachment site AJS_RS15280 SM00822 AJS_RS15280 AJS_RS15300 SM00382 ATPases associated with a variety of cellular activities AJS_RS15310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS15310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS15365 SM00382 ATPases associated with a variety of cellular activities AJS_RS15380 SM00382 ATPases associated with a variety of cellular activities AJS_RS15385 SM01092 CO dehydrogenase flavoprotein C-terminal domain AJS_RS15390 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AJS_RS15395 SM00091 PAS domain AJS_RS15395 SM00267 diguanylate cyclase AJS_RS15400 SM00419 helix_turn_helix, cAMP Regulatory protein AJS_RS15410 SM00052 Putative diguanylate phosphodiesterase AJS_RS15410 SM00267 diguanylate cyclase AJS_RS15435 SM00382 ATPases associated with a variety of cellular activities AJS_RS15480 SM00382 ATPases associated with a variety of cellular activities AJS_RS15485 SM00382 ATPases associated with a variety of cellular activities AJS_RS15505 SM00382 ATPases associated with a variety of cellular activities AJS_RS15515 SM00382 ATPases associated with a variety of cellular activities AJS_RS15560 SM00400 zinc finger AJS_RS15560 SM00493 AJS_RS15560 AJS_RS15610 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS15625 SM00954 Region found in RelA / SpoT proteins AJS_RS15645 SM00448 cheY-homologous receiver domain AJS_RS15645 SM00862 Transcriptional regulatory protein, C terminal AJS_RS15650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS15650 SM00387 Histidine kinase-like ATPases AJS_RS15650 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS15665 SM00487 DEAD-like helicases superfamily AJS_RS15665 SM00490 helicase superfamily c-terminal domain AJS_RS15665 SM00982 AJS_RS15665 AJS_RS15665 SM01058 CarD-like/TRCF domain AJS_RS15730 SM00478 endonuclease III AJS_RS15730 SM00525 AJS_RS15730 AJS_RS15835 SM00155 Phospholipase D. Active site motifs. AJS_RS15870 SM00382 ATPases associated with a variety of cellular activities AJS_RS15870 SM01086 C-terminal, D2-small domain, of ClpB protein AJS_RS15895 SM00852 Probable molybdopterin binding domain AJS_RS15930 SM00670 Large family of predicted nucleotide-binding domains AJS_RS15940 SM00382 ATPases associated with a variety of cellular activities AJS_RS15975 SM00271 DnaJ molecular chaperone homology domain AJS_RS16015 SM00849 Metallo-beta-lactamase superfamily AJS_RS16015 SM01027 Beta-Casp domain AJS_RS16045 SM01329 AJS_RS16045 AJS_RS16055 SM00859 Semialdehyde dehydrogenase, NAD binding domain AJS_RS16095 SM00464 Found in ATP-dependent protease La (LON) AJS_RS16135 SM00267 diguanylate cyclase AJS_RS16135 SM00448 cheY-homologous receiver domain AJS_RS16160 SM00382 ATPases associated with a variety of cellular activities AJS_RS16165 SM00382 ATPases associated with a variety of cellular activities AJS_RS16215 SM00358 Double-stranded RNA binding motif AJS_RS16215 SM00535 Ribonuclease III family AJS_RS16230 SM00838 Elongation factor G C-terminus AJS_RS16235 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AJS_RS16260 SM00825 Beta-ketoacyl synthase AJS_RS16265 SM00823 Phosphopantetheine attachment site AJS_RS16270 SM00822 AJS_RS16270 AJS_RS16275 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AJS_RS16325 SM00363 S4 RNA-binding domain AJS_RS16330 SM00316 Ribosomal protein S1-like RNA-binding domain AJS_RS16345 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AJS_RS16355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS16415 SM00382 ATPases associated with a variety of cellular activities AJS_RS16425 SM01359 AJS_RS16425 AJS_RS16425 SM01360 AJS_RS16425 AJS_RS16430 SM01060 AJS_RS16430 AJS_RS16450 SM00448 cheY-homologous receiver domain AJS_RS16450 SM00850 LytTr DNA-binding domain AJS_RS16465 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AJS_RS16465 SM00474 3'-5' exonuclease AJS_RS16465 SM00475 5'-3' exonuclease AJS_RS16465 SM00482 DNA polymerase A domain AJS_RS16510 SM01240 AJS_RS16510 AJS_RS16585 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS16585 SM00419 helix_turn_helix, cAMP Regulatory protein AJS_RS16605 SM00487 DEAD-like helicases superfamily AJS_RS16605 SM00490 helicase superfamily c-terminal domain AJS_RS16610 SM00479 AJS_RS16610 AJS_RS16685 SM00382 ATPases associated with a variety of cellular activities AJS_RS16690 SM00382 ATPases associated with a variety of cellular activities AJS_RS16705 SM00382 ATPases associated with a variety of cellular activities AJS_RS16755 SM00986 Uracil DNA glycosylase superfamily AJS_RS16755 SM00987 UreE urease accessory protein, C-terminal domain AJS_RS16765 SM00843 AJS_RS16765 AJS_RS16835 SM00028 Tetratricopeptide repeats AJS_RS16840 SM00507 HNH nucleases AJS_RS16845 SM00904 Riboflavin kinase AJS_RS16925 SM00382 ATPases associated with a variety of cellular activities AJS_RS16935 SM00986 Uracil DNA glycosylase superfamily AJS_RS16935 SM00987 UreE urease accessory protein, C-terminal domain AJS_RS16950 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AJS_RS16960 SM00382 ATPases associated with a variety of cellular activities AJS_RS17010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS17010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS17015 SM00481 DNA polymerase alpha chain like domain AJS_RS17025 SM00327 von Willebrand factor (vWF) type A domain AJS_RS17065 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS17075 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS17075 SM00267 diguanylate cyclase AJS_RS17080 SM00052 Putative diguanylate phosphodiesterase AJS_RS17090 SM00116 Domain in cystathionine beta-synthase and other proteins. AJS_RS17095 SM01091 Transporter associated domain AJS_RS17120 SM00463 Small MutS-related domain AJS_RS17180 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AJS_RS17210 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AJS_RS17215 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AJS_RS17255 SM00450 Rhodanese Homology Domain AJS_RS17280 SM00342 helix_turn_helix, arabinose operon control protein AJS_RS17375 SM00450 Rhodanese Homology Domain AJS_RS17380 SM00855 Phosphoglycerate mutase family AJS_RS17385 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AJS_RS17385 SM00245 tail specific protease AJS_RS17395 SM00448 cheY-homologous receiver domain AJS_RS17400 SM00421 helix_turn_helix, Lux Regulon AJS_RS17400 SM00448 cheY-homologous receiver domain AJS_RS17405 SM00387 Histidine kinase-like ATPases AJS_RS17425 SM00749 bacterial OsmY and nodulation domain AJS_RS17455 SM00382 ATPases associated with a variety of cellular activities AJS_RS17455 SM00962 SRP54-type protein, GTPase domain AJS_RS17455 SM00963 SRP54-type protein, helical bundle domain AJS_RS17475 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS17480 SM00052 Putative diguanylate phosphodiesterase AJS_RS17480 SM00091 PAS domain AJS_RS17480 SM00267 diguanylate cyclase AJS_RS17590 SM00882 Coenzyme A transferase AJS_RS17595 SM00882 Coenzyme A transferase AJS_RS17600 SM00346 helix_turn_helix isocitrate lyase regulation AJS_RS17625 SM00382 ATPases associated with a variety of cellular activities AJS_RS17665 SM00155 Phospholipase D. Active site motifs. AJS_RS17680 SM00382 ATPases associated with a variety of cellular activities AJS_RS17690 SM00563 Phosphate acyltransferases AJS_RS17710 SM00732 Likely ribonuclease with RNase H fold. AJS_RS17720 SM00073 Histidine Phosphotransfer domain AJS_RS17720 SM00260 Two component signalling adaptor domain AJS_RS17720 SM00387 Histidine kinase-like ATPases AJS_RS17720 SM00448 cheY-homologous receiver domain AJS_RS17720 SM01231 AJS_RS17720 AJS_RS17725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS17730 SM00260 Two component signalling adaptor domain AJS_RS17735 SM00448 cheY-homologous receiver domain AJS_RS17740 SM00448 cheY-homologous receiver domain AJS_RS17765 SM00798 AICARFT/IMPCHase bienzyme AJS_RS17765 SM00851 MGS-like domain AJS_RS17790 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS17795 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS17810 SM00382 ATPases associated with a variety of cellular activities AJS_RS17835 SM00382 ATPases associated with a variety of cellular activities AJS_RS17880 SM00487 DEAD-like helicases superfamily AJS_RS17975 SM00729 Elongator protein 3, MiaB family, Radical SAM AJS_RS17980 SM00382 ATPases associated with a variety of cellular activities AJS_RS17980 SM00962 SRP54-type protein, GTPase domain AJS_RS17980 SM00963 SRP54-type protein, helical bundle domain AJS_RS17995 SM00387 Histidine kinase-like ATPases AJS_RS17995 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS18000 SM00382 ATPases associated with a variety of cellular activities AJS_RS18000 SM00448 cheY-homologous receiver domain AJS_RS18005 SM00644 AJS_RS18005 AJS_RS18040 SM00878 Biotin carboxylase C-terminal domain AJS_RS18120 SM00955 AJS_RS18120 AJS_RS18145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS18145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS18150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS18150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS18165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS18165 SM01049 AJS_RS18165 AJS_RS18170 SM00864 Tubulin/FtsZ family, GTPase domain AJS_RS18170 SM00865 Tubulin/FtsZ family, C-terminal domain AJS_RS18175 SM00842 Cell division protein FtsA AJS_RS18245 SM00382 ATPases associated with a variety of cellular activities AJS_RS18245 SM01086 C-terminal, D2-small domain, of ClpB protein AJS_RS18265 SM00833 Cobalamin synthesis protein cobW C-terminal domain AJS_RS18300 SM00849 Metallo-beta-lactamase superfamily AJS_RS18305 SM00363 S4 RNA-binding domain AJS_RS18315 SM00382 ATPases associated with a variety of cellular activities AJS_RS18345 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AJS_RS18370 SM00487 DEAD-like helicases superfamily AJS_RS18370 SM00490 helicase superfamily c-terminal domain AJS_RS18385 SM00052 Putative diguanylate phosphodiesterase AJS_RS18385 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AJS_RS18385 SM00091 PAS domain AJS_RS18385 SM00267 diguanylate cyclase AJS_RS18400 SM00382 ATPases associated with a variety of cellular activities AJS_RS18415 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AJS_RS18465 SM00155 Phospholipase D. Active site motifs. AJS_RS18490 SM00893 Electron transfer flavoprotein domain AJS_RS18495 SM00893 Electron transfer flavoprotein domain AJS_RS18575 SM00382 ATPases associated with a variety of cellular activities AJS_RS18620 SM00267 diguanylate cyclase AJS_RS18635 SM00878 Biotin carboxylase C-terminal domain AJS_RS18665 SM00342 helix_turn_helix, arabinose operon control protein AJS_RS18705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS18735 SM00947 Carbonic anhydrase AJS_RS18745 SM00422 helix_turn_helix, mercury resistance AJS_RS18795 SM00382 ATPases associated with a variety of cellular activities AJS_RS18800 SM00448 cheY-homologous receiver domain AJS_RS18810 SM00138 Methyltransferase, chemotaxis proteins AJS_RS18815 SM00260 Two component signalling adaptor domain AJS_RS18820 SM00073 Histidine Phosphotransfer domain AJS_RS18820 SM00260 Two component signalling adaptor domain AJS_RS18820 SM00387 Histidine kinase-like ATPases AJS_RS18820 SM01231 AJS_RS18820 AJS_RS18825 SM00448 cheY-homologous receiver domain AJS_RS18835 SM00387 Histidine kinase-like ATPases AJS_RS18835 SM00448 cheY-homologous receiver domain AJS_RS18840 SM00421 helix_turn_helix, Lux Regulon AJS_RS18840 SM00448 cheY-homologous receiver domain AJS_RS18890 SM00382 ATPases associated with a variety of cellular activities AJS_RS18955 SM00448 cheY-homologous receiver domain AJS_RS18975 SM00382 ATPases associated with a variety of cellular activities AJS_RS18975 SM00962 SRP54-type protein, GTPase domain AJS_RS19000 SM00858 AJS_RS19000 AJS_RS19050 SM00047 Lysozyme subfamily 2 AJS_RS19080 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS19125 SM00855 Phosphoglycerate mutase family AJS_RS19135 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AJS_RS19155 SM00881 CoA binding domain AJS_RS19180 SM00487 DEAD-like helicases superfamily AJS_RS19180 SM00490 helicase superfamily c-terminal domain AJS_RS19185 SM00870 AJS_RS19185 AJS_RS19250 SM00344 helix_turn_helix ASNC type AJS_RS19260 SM00563 Phosphate acyltransferases AJS_RS19265 SM00530 Helix-turn-helix XRE-family like proteins AJS_RS19305 SM00897 FIST N domain AJS_RS19305 SM01204 AJS_RS19305 AJS_RS19315 SM00411 bacterial (prokaryotic) histone like domain AJS_RS19330 SM00448 cheY-homologous receiver domain AJS_RS19335 SM00091 PAS domain AJS_RS19335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS19335 SM00387 Histidine kinase-like ATPases AJS_RS19335 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS19355 SM00663 RNA polymerase I subunit A N-terminus AJS_RS19380 SM00649 Ribosomal protein L11/L12 AJS_RS19385 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AJS_RS19385 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AJS_RS19590 SM01001 AIR carboxylase AJS_RS19640 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain AJS_RS19690 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AJS_RS19690 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AJS_RS19705 SM01011 Aminopeptidase P, N-terminal domain AJS_RS19720 SM00861 Transketolase, pyrimidine binding domain AJS_RS19725 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AJS_RS19775 SM01144 AJS_RS19775 AJS_RS19780 SM00346 helix_turn_helix isocitrate lyase regulation AJS_RS19800 SM00881 CoA binding domain AJS_RS19840 SM00151 SWI complex, BAF60b domains AJS_RS19840 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AJS_RS19840 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AJS_RS19840 SM00493 AJS_RS19840 AJS_RS19845 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AJS_RS19880 SM00387 Histidine kinase-like ATPases AJS_RS19880 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS19885 SM00448 cheY-homologous receiver domain AJS_RS19885 SM00862 Transcriptional regulatory protein, C terminal AJS_RS19895 SM00382 ATPases associated with a variety of cellular activities AJS_RS19920 SM01323 AJS_RS19920 AJS_RS19935 SM00344 helix_turn_helix ASNC type AJS_RS19955 SM00925 MltA specific insert domain AJS_RS19965 SM00421 helix_turn_helix, Lux Regulon AJS_RS19965 SM00448 cheY-homologous receiver domain AJS_RS19970 SM00091 PAS domain AJS_RS19970 SM00387 Histidine kinase-like ATPases AJS_RS19970 SM00388 His Kinase A (phosphoacceptor) domain AJS_RS20025 SM01322 AJS_RS20025 AJS_RS20110 SM00240 Forkhead associated domain AJS_RS20115 SM00331 Sigma factor PP2C-like phosphatases AJS_RS20115 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AJS_RS20125 SM00881 CoA binding domain AJS_RS20135 SM00859 Semialdehyde dehydrogenase, NAD binding domain AJS_RS20145 SM00257 Lysin motif AJS_RS20185 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AJS_RS20205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS20205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS20310 SM00387 Histidine kinase-like ATPases AJS_RS20315 SM00448 cheY-homologous receiver domain AJS_RS20315 SM00862 Transcriptional regulatory protein, C terminal AJS_RS20430 SM00919 Malic enzyme, NAD binding domain AJS_RS20430 SM01274 AJS_RS20430 AJS_RS20445 SM00650 Ribosomal RNA adenine dimethylases AJS_RS20490 SM00267 diguanylate cyclase AJS_RS20505 SM00267 diguanylate cyclase AJS_RS20510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AJS_RS20510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AJS_RS20530 SM00360 RNA recognition motif AJS_RS20535 SM00360 RNA recognition motif AJS_RS20555 SM00116 Domain in cystathionine beta-synthase and other proteins. AJS_RS20580 SM00100 Cyclic nucleotide-monophosphate binding domain AJS_RS20600 SM01234 AJS_RS20600 AJS_RS20615 SM00382 ATPases associated with a variety of cellular activities AJS_RS20615 SM00760 Bacterial dnaA protein helix-turn-helix domain AJS_RS20620 SM00480 DNA polymerase III beta subunit AJS_RS20625 SM00387 Histidine kinase-like ATPases AJS_RS20625 SM00433 TopoisomeraseII AJS_RS20680 SM01126 AJS_RS20680 AJS_RS20685 SM00487 DEAD-like helicases superfamily AJS_RS20685 SM00491 AJS_RS20685 AJS_RS20695 SM00479 AJS_RS20695 AJS_RS20705 SM00345 helix_turn_helix gluconate operon transcriptional repressor AJS_RS21475 SM00382 ATPases associated with a variety of cellular activities