locus-tag class description YS110_RS00005 PF13356 Arm DNA-binding domain YS110_RS00005 PF14659 Phage integrase, N-terminal SAM-like domain YS110_RS00005 PF00589 Phage integrase family YS110_RS00010 PF05973 Phage derived protein Gp49-like (DUF891) YS110_RS00020 PF01548 Transposase YS110_RS00020 PF02371 Transposase IS116/IS110/IS902 family YS110_RS00050 PF02384 N-6 DNA Methylase YS110_RS00055 PF09572 XamI restriction endonuclease YS110_RS00105 PF00669 Bacterial flagellin N-terminal helical region YS110_RS00105 PF00700 Bacterial flagellin C-terminal helical region YS110_RS00140 PF02885 Glycosyl transferase family, helical bundle domain YS110_RS00140 PF00591 Glycosyl transferase family, a/b domain YS110_RS00140 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain YS110_RS00145 PF14572 Phosphoribosyl synthetase-associated domain YS110_RS00145 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YS110_RS00160 PF01381 Helix-turn-helix YS110_RS00165 PF03186 CobD/Cbib protein YS110_RS00175 PF00144 Beta-lactamase YS110_RS00180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YS110_RS00180 PF07685 CobB/CobQ-like glutamine amidotransferase domain YS110_RS00185 PF08241 Methyltransferase domain YS110_RS00190 PF02277 Phosphoribosyltransferase YS110_RS00195 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS00200 PF10576 Iron-sulfur binding domain of endonuclease III YS110_RS00200 PF00633 Helix-hairpin-helix motif YS110_RS00200 PF00730 HhH-GPD superfamily base excision DNA repair protein YS110_RS00210 PF00155 Aminotransferase class I and II YS110_RS00215 PF04102 SlyX YS110_RS00225 PF12843 Putative quorum-sensing-regulated virulence factor YS110_RS00235 PF01814 Hemerythrin HHE cation binding domain YS110_RS00235 PF04405 Domain of Unknown function (DUF542) YS110_RS00240 PF02082 Transcriptional regulator YS110_RS00245 PF03466 LysR substrate binding domain YS110_RS00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS00250 PF01810 LysE type translocator YS110_RS00255 PF03180 NLPA lipoprotein YS110_RS00295 PF00072 Response regulator receiver domain YS110_RS00295 PF00196 Bacterial regulatory proteins, luxR family YS110_RS00300 PF03461 TRCF domain YS110_RS00300 PF00271 Helicase conserved C-terminal domain YS110_RS00300 PF00270 DEAD/DEAH box helicase YS110_RS00300 PF02559 CarD-like/TRCF domain YS110_RS00300 PF17757 UvrB interaction domain YS110_RS00305 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YS110_RS00305 PF02542 YgbB family YS110_RS00310 PF02542 YgbB family YS110_RS00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS00315 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS00315 PF00672 HAMP domain YS110_RS00320 PF00486 Transcriptional regulatory protein, C terminal YS110_RS00320 PF00072 Response regulator receiver domain YS110_RS00330 PF00106 short chain dehydrogenase YS110_RS00340 PF04607 Region found in RelA / SpoT proteins YS110_RS00340 PF02824 TGS domain YS110_RS00340 PF13291 ACT domain YS110_RS00355 PF05430 S-adenosyl-L-methionine-dependent methyltransferase YS110_RS00355 PF01266 FAD dependent oxidoreductase YS110_RS00360 PF03458 UPF0126 domain YS110_RS00365 PF04362 Bacterial Fe(2+) trafficking YS110_RS00375 PF03358 NADPH-dependent FMN reductase YS110_RS00380 PF09084 NMT1/THI5 like YS110_RS00390 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS00395 PF00005 ABC transporter YS110_RS00400 PF03459 TOBE domain YS110_RS00405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS00405 PF03466 LysR substrate binding domain YS110_RS00415 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_RS00425 PF00266 Aminotransferase class-V YS110_RS00440 PF02666 Phosphatidylserine decarboxylase YS110_RS00445 PF00571 CBS domain YS110_RS00445 PF00005 ABC transporter YS110_RS00450 PF01176 Translation initiation factor 1A / IF-1 YS110_RS00460 PF05958 tRNA (Uracil-5-)-methyltransferase YS110_RS00475 PF00529 HlyD membrane-fusion protein of T1SS YS110_RS00475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS00480 PF00873 AcrB/AcrD/AcrF family YS110_RS00485 PF02321 Outer membrane efflux protein YS110_RS00505 PF04279 Intracellular septation protein A YS110_RS00510 PF01641 SelR domain YS110_RS00515 PF02696 Uncharacterized ACR, YdiU/UPF0061 family YS110_RS00520 PF00027 Cyclic nucleotide-binding domain YS110_RS00520 PF13545 Crp-like helix-turn-helix domain YS110_RS00530 PF13193 AMP-binding enzyme C-terminal domain YS110_RS00530 PF00501 AMP-binding enzyme YS110_RS00540 PF02653 Branched-chain amino acid transport system / permease component YS110_RS00550 PF00005 ABC transporter YS110_RS00550 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS00555 PF00005 ABC transporter YS110_RS00560 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS00560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_RS00560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_RS00565 PF02803 Thiolase, C-terminal domain YS110_RS00565 PF00108 Thiolase, N-terminal domain YS110_RS00570 PF01841 Transglutaminase-like superfamily YS110_RS00570 PF08379 Bacterial transglutaminase-like N-terminal region YS110_RS00575 PF14403 Circularly permuted ATP-grasp type 2 YS110_RS00575 PF04168 A predicted alpha-helical domain with a conserved ER motif. YS110_RS00590 PF08379 Bacterial transglutaminase-like N-terminal region YS110_RS00590 PF01841 Transglutaminase-like superfamily YS110_RS00600 PF14403 Circularly permuted ATP-grasp type 2 YS110_RS00620 PF01027 Inhibitor of apoptosis-promoting Bax1 YS110_RS00625 PF03928 Haem-degrading YS110_RS00630 PF01132 Elongation factor P (EF-P) OB domain YS110_RS00630 PF08207 Elongation factor P (EF-P) KOW-like domain YS110_RS00630 PF09285 Elongation factor P, C-terminal YS110_RS00640 PF01541 GIY-YIG catalytic domain YS110_RS00640 PF08459 UvrC Helix-hairpin-helix N-terminal YS110_RS00645 PF01066 CDP-alcohol phosphatidyltransferase YS110_RS00650 PF00216 Bacterial DNA-binding protein YS110_RS00660 PF05698 Bacterial trigger factor protein (TF) C-terminus YS110_RS00690 PF07715 TonB-dependent Receptor Plug Domain YS110_RS00690 PF00593 TonB dependent receptor YS110_RS00715 PF00795 Carbon-nitrogen hydrolase YS110_RS00715 PF02540 NAD synthase YS110_RS00720 PF00543 Nitrogen regulatory protein P-II YS110_RS00725 PF03641 Possible lysine decarboxylase YS110_RS00730 PF01219 Prokaryotic diacylglycerol kinase YS110_RS00750 PF08281 Sigma-70, region 4 YS110_RS00750 PF04542 Sigma-70 region 2 YS110_RS00755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YS110_RS00755 PF00205 Thiamine pyrophosphate enzyme, central domain YS110_RS00755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YS110_RS00760 PF10369 Small subunit of acetolactate synthase YS110_RS00765 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain YS110_RS00765 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain YS110_RS00770 PF01066 CDP-alcohol phosphatidyltransferase YS110_RS00775 PF08502 LeuA allosteric (dimerisation) domain YS110_RS00775 PF00682 HMGL-like YS110_RS00780 PF00768 D-alanyl-D-alanine carboxypeptidase YS110_RS00785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) YS110_RS00790 PF03334 Na+/H+ antiporter subunit YS110_RS00795 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) YS110_RS00805 PF00361 Proton-conducting membrane transporter YS110_RS00810 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YS110_RS00815 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter YS110_RS00815 PF13244 Domain of unknown function (DUF4040) YS110_RS00815 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YS110_RS00815 PF00361 Proton-conducting membrane transporter YS110_RS00825 PF18073 Rubredoxin metal binding domain YS110_RS00835 PF00216 Bacterial DNA-binding protein YS110_RS00840 PF00575 S1 RNA binding domain YS110_RS00845 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YS110_RS00850 PF02153 Prephenate dehydrogenase YS110_RS00855 PF01817 Chorismate mutase type II YS110_RS00855 PF00800 Prephenate dehydratase YS110_RS00855 PF01842 ACT domain YS110_RS00860 PF00266 Aminotransferase class-V YS110_RS00865 PF00521 DNA gyrase/topoisomerase IV, subunit A YS110_RS00865 PF03989 DNA gyrase C-terminal domain, beta-propeller YS110_RS00870 PF00691 OmpA family YS110_RS00875 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS00885 PF01668 SmpB protein YS110_RS00890 PF03364 Polyketide cyclase / dehydrase and lipid transport YS110_RS00895 PF03658 RnfH family Ubiquitin YS110_RS00905 PF00478 IMP dehydrogenase / GMP reductase domain YS110_RS00905 PF00571 CBS domain YS110_RS00910 PF02540 NAD synthase YS110_RS00910 PF00958 GMP synthase C terminal domain YS110_RS00910 PF00117 Glutamine amidotransferase class-I YS110_RS00915 PF00589 Phage integrase family YS110_RS00915 PF13356 Arm DNA-binding domain YS110_RS00970 PF04002 RadC-like JAB domain YS110_RS00985 PF06067 Domain of unknown function (DUF932) YS110_RS00990 PF02195 ParB-like nuclease domain YS110_RS01005 PF05284 Protein of unknown function (DUF736) YS110_RS01035 PF13614 AAA domain YS110_RS01050 PF10502 Signal peptidase, peptidase S26 YS110_RS01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS01060 PF03466 LysR substrate binding domain YS110_RS01070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YS110_RS01075 PF00857 Isochorismatase family YS110_RS01095 PF00155 Aminotransferase class I and II YS110_RS01110 PF13537 Glutamine amidotransferase domain YS110_RS01110 PF00733 Asparagine synthase YS110_RS01115 PF07690 Major Facilitator Superfamily YS110_RS01120 PF03466 LysR substrate binding domain YS110_RS01120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS01130 PF02534 Type IV secretory system Conjugative DNA transfer YS110_RS01140 PF00437 Type II/IV secretion system protein YS110_RS01145 PF04956 TrbC/VIRB2 family YS110_RS01155 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_RS01170 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YS110_RS01180 PF03524 Conjugal transfer protein YS110_RS01185 PF03743 Bacterial conjugation TrbI-like protein YS110_RS01235 PF00106 short chain dehydrogenase YS110_RS01240 PF13416 Bacterial extracellular solute-binding protein YS110_RS01255 PF04304 Protein of unknown function (DUF454) YS110_RS01260 PF01327 Polypeptide deformylase YS110_RS01275 PF01966 HD domain YS110_RS01275 PF01909 Nucleotidyltransferase domain YS110_RS01275 PF08335 GlnD PII-uridylyltransferase YS110_RS01280 PF00557 Metallopeptidase family M24 YS110_RS01285 PF02769 AIR synthase related protein, C-terminal domain YS110_RS01285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain YS110_RS01285 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal YS110_RS01290 PF05661 Protein of unknown function (DUF808) YS110_RS01295 PF03922 OmpW family YS110_RS01300 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_RS01310 PF12392 Collagenase YS110_RS01310 PF01136 Peptidase family U32 YS110_RS01315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YS110_RS01325 PF14437 MafB19-like deaminase YS110_RS01330 PF02016 LD-carboxypeptidase N-terminal domain YS110_RS01330 PF17676 LD-carboxypeptidase C-terminal domain YS110_RS01335 PF01734 Patatin-like phospholipase YS110_RS01340 PF00171 Aldehyde dehydrogenase family YS110_RS01340 PF14850 DNA-binding domain of Proline dehydrogenase YS110_RS01340 PF18327 Proline utilization A proline dehydrogenase N-terminal domain YS110_RS01340 PF01619 Proline dehydrogenase YS110_RS01345 PF00211 Adenylate and Guanylate cyclase catalytic domain YS110_RS01345 PF16701 Adenylate cyclase regulatory domain YS110_RS01350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS01350 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS01350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS01360 PF00027 Cyclic nucleotide-binding domain YS110_RS01360 PF13545 Crp-like helix-turn-helix domain YS110_RS01370 PF02581 Thiamine monophosphate synthase YS110_RS01375 PF05690 Thiazole biosynthesis protein ThiG YS110_RS01385 PF01266 FAD dependent oxidoreductase YS110_RS01390 PF08543 Phosphomethylpyrimidine kinase YS110_RS01395 PF01757 Acyltransferase family YS110_RS01400 PF00939 Sodium:sulfate symporter transmembrane region YS110_RS01410 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS01410 PF00563 EAL domain YS110_RS01410 PF03707 Bacterial signalling protein N terminal repeat YS110_RS01415 PF00672 HAMP domain YS110_RS01415 PF02743 Cache domain YS110_RS01415 PF00211 Adenylate and Guanylate cyclase catalytic domain YS110_RS01425 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS01430 PF00037 4Fe-4S binding domain YS110_RS01430 PF11953 Domain of unknown function (DUF3470) YS110_RS01435 PF00009 Elongation factor Tu GTP binding domain YS110_RS01440 PF01507 Phosphoadenosine phosphosulfate reductase family YS110_RS01445 PF01507 Phosphoadenosine phosphosulfate reductase family YS110_RS01460 PF01925 Sulfite exporter TauE/SafE YS110_RS01465 PF01554 MatE YS110_RS01480 PF01197 Ribosomal protein L31 YS110_RS01500 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS01505 PF07660 Secretin and TonB N terminus short domain YS110_RS01505 PF07715 TonB-dependent Receptor Plug Domain YS110_RS01505 PF00593 TonB dependent receptor YS110_RS01510 PF04773 FecR protein YS110_RS01510 PF16220 Domain of unknown function (DUF4880) YS110_RS01515 PF08281 Sigma-70, region 4 YS110_RS01515 PF04542 Sigma-70 region 2 YS110_RS01525 PF07497 Rho termination factor, RNA-binding domain YS110_RS01525 PF07498 Rho termination factor, N-terminal domain YS110_RS01525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_RS01530 PF00085 Thioredoxin YS110_RS01545 PF12705 PD-(D/E)XK nuclease superfamily YS110_RS01545 PF00580 UvrD/REP helicase N-terminal domain YS110_RS01545 PF13361 UvrD-like helicase C-terminal domain YS110_RS01555 PF04542 Sigma-70 region 2 YS110_RS01555 PF08281 Sigma-70, region 4 YS110_RS01555 PF12680 SnoaL-like domain YS110_RS01570 PF07715 TonB-dependent Receptor Plug Domain YS110_RS01570 PF00593 TonB dependent receptor YS110_RS01580 PF01497 Periplasmic binding protein YS110_RS01585 PF01032 FecCD transport family YS110_RS01590 PF00005 ABC transporter YS110_RS01595 PF13649 Methyltransferase domain YS110_RS01605 PF01032 FecCD transport family YS110_RS01610 PF00005 ABC transporter YS110_RS01630 PF01032 FecCD transport family YS110_RS01635 PF00005 ABC transporter YS110_RS01645 PF01209 ubiE/COQ5 methyltransferase family YS110_RS01650 PF01497 Periplasmic binding protein YS110_RS01660 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS01665 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YS110_RS01665 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YS110_RS01685 PF02080 TrkA-C domain YS110_RS01685 PF03600 Citrate transporter YS110_RS01705 PF00535 Glycosyl transferase family 2 YS110_RS01735 PF00005 ABC transporter YS110_RS01740 PF01061 ABC-2 type transporter YS110_RS01745 PF07715 TonB-dependent Receptor Plug Domain YS110_RS01745 PF00593 TonB dependent receptor YS110_RS01825 PF10124 Mu-like prophage major head subunit gpT YS110_RS01835 PF10123 Mu-like prophage I protein YS110_RS01855 PF04381 Putative exonuclease, RdgC YS110_RS02000 PF03237 Terminase-like family YS110_RS02005 PF06074 Protein of unknown function (DUF935) YS110_RS02010 PF04233 Phage Mu protein F like protein YS110_RS02055 PF03030 Inorganic H+ pyrophosphatase YS110_RS02060 PF00719 Inorganic pyrophosphatase YS110_RS02070 PF01584 CheW-like domain YS110_RS02075 PF00672 HAMP domain YS110_RS02075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS02075 PF02203 Tar ligand binding domain homologue YS110_RS02080 PF13609 Gram-negative porin YS110_RS02105 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS02105 PF03707 Bacterial signalling protein N terminal repeat YS110_RS02105 PF00563 EAL domain YS110_RS02115 PF17941 Polyphosphate kinase C-terminal domain 1 YS110_RS02115 PF02503 Polyphosphate kinase middle domain YS110_RS02115 PF13090 Polyphosphate kinase C-terminal domain 2 YS110_RS02115 PF13089 Polyphosphate kinase N-terminal domain YS110_RS02125 PF05233 PHB accumulation regulatory domain YS110_RS02125 PF07879 PHB/PHA accumulation regulator DNA-binding domain YS110_RS02130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS02130 PF03466 LysR substrate binding domain YS110_RS02140 PF01256 Carbohydrate kinase YS110_RS02140 PF03853 YjeF-related protein N-terminus YS110_RS02145 PF01266 FAD dependent oxidoreductase YS110_RS02150 PF00318 Ribosomal protein S2 YS110_RS02155 PF00889 Elongation factor TS YS110_RS02160 PF00696 Amino acid kinase family YS110_RS02165 PF01765 Ribosome recycling factor YS110_RS02170 PF01255 Putative undecaprenyl diphosphate synthase YS110_RS02180 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase YS110_RS02180 PF13288 DXP reductoisomerase C-terminal domain YS110_RS02180 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain YS110_RS02185 PF17820 PDZ domain YS110_RS02185 PF02163 Peptidase family M50 YS110_RS02190 PF01103 Surface antigen YS110_RS02190 PF07244 Surface antigen variable number repeat YS110_RS02200 PF14602 Hexapeptide repeat of succinyl-transferase YS110_RS02200 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_RS02200 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD YS110_RS02205 PF07977 FabA-like domain YS110_RS02210 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_RS02210 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 YS110_RS02215 PF02684 Lipid-A-disaccharide synthetase YS110_RS02220 PF01351 Ribonuclease HII YS110_RS02225 PF00588 SpoU rRNA Methylase family YS110_RS02225 PF08032 RNA 2'-O ribose methyltransferase substrate binding YS110_RS02230 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YS110_RS02230 PF00117 Glutamine amidotransferase class-I YS110_RS02235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain YS110_RS02235 PF02142 MGS-like domain YS110_RS02235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS02240 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_RS02240 PF03449 Transcription elongation factor, N-terminal YS110_RS02260 PF01985 CRS1 / YhbY (CRM) domain YS110_RS02265 PF01728 FtsJ-like methyltransferase YS110_RS02270 PF17862 AAA+ lid domain YS110_RS02270 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS02270 PF06480 FtsH Extracellular YS110_RS02270 PF01434 Peptidase family M41 YS110_RS02275 PF00809 Pterin binding enzyme YS110_RS02280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YS110_RS02280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YS110_RS02280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YS110_RS02280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YS110_RS02295 PF02779 Transketolase, pyrimidine binding domain YS110_RS02295 PF16870 2-oxoglutarate dehydrogenase C-terminal YS110_RS02295 PF16078 2-oxoglutarate dehydrogenase N-terminus YS110_RS02295 PF00676 Dehydrogenase E1 component YS110_RS02300 PF00364 Biotin-requiring enzyme YS110_RS02300 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YS110_RS02300 PF02817 e3 binding domain YS110_RS02305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YS110_RS02305 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS02310 PF03969 AFG1-like ATPase YS110_RS02325 PF04851 Type III restriction enzyme, res subunit YS110_RS02325 PF13307 Helicase C-terminal domain YS110_RS02330 PF04542 Sigma-70 region 2 YS110_RS02330 PF08281 Sigma-70, region 4 YS110_RS02335 PF16220 Domain of unknown function (DUF4880) YS110_RS02335 PF04773 FecR protein YS110_RS02340 PF00593 TonB dependent receptor YS110_RS02340 PF07660 Secretin and TonB N terminus short domain YS110_RS02340 PF07715 TonB-dependent Receptor Plug Domain YS110_RS02350 PF01850 PIN domain YS110_RS02355 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system YS110_RS02375 PF01850 PIN domain YS110_RS02385 PF02690 Na+/Pi-cotransporter YS110_RS02395 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS02415 PF05872 Bacterial protein of unknown function (DUF853) YS110_RS02420 PF01709 Transcriptional regulator YS110_RS02425 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YS110_RS02425 PF02843 Phosphoribosylglycinamide synthetase, C domain YS110_RS02425 PF02844 Phosphoribosylglycinamide synthetase, N domain YS110_RS02430 PF01218 Coproporphyrinogen III oxidase YS110_RS02440 PF02590 Predicted SPOUT methyltransferase YS110_RS02445 PF02545 Maf-like protein YS110_RS02460 PF07728 AAA domain (dynein-related subfamily) YS110_RS02460 PF08406 CbbQ/NirQ/NorQ C-terminal YS110_RS02465 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_RS02470 PF00034 Cytochrome c YS110_RS02475 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YS110_RS02480 PF00510 Cytochrome c oxidase subunit III YS110_RS02485 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS02490 PF13186 Iron-sulfur cluster-binding domain YS110_RS02490 PF04055 Radical SAM superfamily YS110_RS02495 PF17805 AsnC-like ligand binding domain YS110_RS02500 PF17805 AsnC-like ligand binding domain YS110_RS02505 PF17805 AsnC-like ligand binding domain YS110_RS02515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS02520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS02525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_RS02525 PF14824 Sirohaem biosynthesis protein central YS110_RS02525 PF10414 Sirohaem synthase dimerisation region YS110_RS02530 PF00575 S1 RNA binding domain YS110_RS02530 PF10150 Ribonuclease E/G family YS110_RS02535 PF07238 PilZ domain YS110_RS02545 PF01548 Transposase YS110_RS02545 PF02371 Transposase IS116/IS110/IS902 family YS110_RS02560 PF01966 HD domain YS110_RS02565 PF00892 EamA-like transporter family YS110_RS02570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS02570 PF03466 LysR substrate binding domain YS110_RS02575 PF17827 PrmC N-terminal domain YS110_RS02575 PF05175 Methyltransferase small domain YS110_RS02590 PF00877 NlpC/P60 family YS110_RS02600 PF00365 Phosphofructokinase YS110_RS02605 PF16177 Acetyl-coenzyme A synthetase N-terminus YS110_RS02605 PF00501 AMP-binding enzyme YS110_RS02605 PF13193 AMP-binding enzyme C-terminal domain YS110_RS02610 PF03707 Bacterial signalling protein N terminal repeat YS110_RS02610 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS02610 PF00563 EAL domain YS110_RS02620 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YS110_RS02620 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YS110_RS02625 PF02805 Metal binding domain of Ada YS110_RS02625 PF12833 Helix-turn-helix domain YS110_RS02630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain YS110_RS02630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YS110_RS02630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III YS110_RS02630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YS110_RS02635 PF00534 Glycosyl transferases group 1 YS110_RS02635 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YS110_RS02640 PF03707 Bacterial signalling protein N terminal repeat YS110_RS02640 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS02640 PF00563 EAL domain YS110_RS02645 PF02321 Outer membrane efflux protein YS110_RS02665 PF13533 Biotin-lipoyl like YS110_RS02670 PF00440 Bacterial regulatory proteins, tetR family YS110_RS02675 PF00582 Universal stress protein family YS110_RS02680 PF01814 Hemerythrin HHE cation binding domain YS110_RS02685 PF02803 Thiolase, C-terminal domain YS110_RS02685 PF00108 Thiolase, N-terminal domain YS110_RS02695 PF00849 RNA pseudouridylate synthase YS110_RS02700 PF00072 Response regulator receiver domain YS110_RS02700 PF13188 PAS domain YS110_RS02700 PF08448 PAS fold YS110_RS02700 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS02700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS02710 PF00155 Aminotransferase class I and II YS110_RS02715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS02715 PF03466 LysR substrate binding domain YS110_RS02735 PF00883 Cytosol aminopeptidase family, catalytic domain YS110_RS02735 PF02789 Cytosol aminopeptidase family, N-terminal domain YS110_RS02750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YS110_RS02750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YS110_RS02760 PF01726 LexA DNA binding domain YS110_RS02760 PF00717 Peptidase S24-like YS110_RS02765 PF00710 Asparaginase, N-terminal YS110_RS02765 PF17763 Glutaminase/Asparaginase C-terminal domain YS110_RS02785 PF07715 TonB-dependent Receptor Plug Domain YS110_RS02785 PF07660 Secretin and TonB N terminus short domain YS110_RS02785 PF00593 TonB dependent receptor YS110_RS02790 PF16220 Domain of unknown function (DUF4880) YS110_RS02790 PF04773 FecR protein YS110_RS02795 PF04542 Sigma-70 region 2 YS110_RS02795 PF08281 Sigma-70, region 4 YS110_RS02800 PF05191 Adenylate kinase, active site lid YS110_RS02805 PF02348 Cytidylyltransferase YS110_RS02810 PF03966 Trm112p-like protein YS110_RS02815 PF02606 Tetraacyldisaccharide-1-P 4'-kinase YS110_RS02820 PF02472 Biopolymer transport protein ExbD/TolR YS110_RS02825 PF01618 MotA/TolQ/ExbB proton channel family YS110_RS02830 PF02601 Exonuclease VII, large subunit YS110_RS02830 PF13742 OB-fold nucleic acid binding domain YS110_RS02835 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YS110_RS02835 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YS110_RS02840 PF03971 Monomeric isocitrate dehydrogenase YS110_RS02855 PF00180 Isocitrate/isopropylmalate dehydrogenase YS110_RS02870 PF00593 TonB dependent receptor YS110_RS02870 PF07715 TonB-dependent Receptor Plug Domain YS110_RS02875 PF16220 Domain of unknown function (DUF4880) YS110_RS02875 PF04773 FecR protein YS110_RS02890 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS02900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YS110_RS02900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YS110_RS02910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS02910 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS02910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS02915 PF00171 Aldehyde dehydrogenase family YS110_RS02920 PF03466 LysR substrate binding domain YS110_RS02920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS02940 PF00324 Amino acid permease YS110_RS02945 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS02945 PF00563 EAL domain YS110_RS02945 PF03707 Bacterial signalling protein N terminal repeat YS110_RS02950 PF06470 SMC proteins Flexible Hinge Domain YS110_RS02950 PF02463 RecF/RecN/SMC N terminal domain YS110_RS02965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain YS110_RS02965 PF03120 NAD-dependent DNA ligase OB-fold domain YS110_RS02965 PF01653 NAD-dependent DNA ligase adenylation domain YS110_RS02965 PF00533 BRCA1 C Terminus (BRCT) domain YS110_RS02965 PF12826 Helix-hairpin-helix motif YS110_RS02985 PF01557 Fumarylacetoacetate (FAA) hydrolase family YS110_RS02995 PF13417 Glutathione S-transferase, N-terminal domain YS110_RS03000 PF02578 Multi-copper polyphenol oxidoreductase laccase YS110_RS03010 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus YS110_RS03015 PF02803 Thiolase, C-terminal domain YS110_RS03015 PF00108 Thiolase, N-terminal domain YS110_RS03020 PF00106 short chain dehydrogenase YS110_RS03030 PF17761 DUF1016 N-terminal domain YS110_RS03030 PF06250 YhcG PDDEXK nuclease domain YS110_RS03035 PF06965 Na+/H+ antiporter 1 YS110_RS03045 PF03358 NADPH-dependent FMN reductase YS110_RS03050 PF03960 ArsC family YS110_RS03055 PF01758 Sodium Bile acid symporter family YS110_RS03065 PF01022 Bacterial regulatory protein, arsR family YS110_RS03075 PF06067 Domain of unknown function (DUF932) YS110_RS03080 PF17762 HTH domain found in ParB protein YS110_RS03080 PF02195 ParB-like nuclease domain YS110_RS03090 PF05284 Protein of unknown function (DUF736) YS110_RS03095 PF01381 Helix-turn-helix YS110_RS03120 PF13614 AAA domain YS110_RS03135 PF10502 Signal peptidase, peptidase S26 YS110_RS03150 PF00486 Transcriptional regulatory protein, C terminal YS110_RS03150 PF00072 Response regulator receiver domain YS110_RS03155 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS03155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS03155 PF08521 Two-component sensor kinase N-terminal YS110_RS03165 PF01292 Prokaryotic cytochrome b561 YS110_RS03175 PF00873 AcrB/AcrD/AcrF family YS110_RS03195 PF08019 Phosphoethanolamine transferase EptA/EptB YS110_RS03195 PF00884 Sulfatase YS110_RS03200 PF01219 Prokaryotic diacylglycerol kinase YS110_RS03205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS03205 PF03466 LysR substrate binding domain YS110_RS03215 PF02534 Type IV secretory system Conjugative DNA transfer YS110_RS03225 PF00437 Type II/IV secretion system protein YS110_RS03230 PF04956 TrbC/VIRB2 family YS110_RS03240 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_RS03255 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YS110_RS03265 PF03524 Conjugal transfer protein YS110_RS03270 PF03743 Bacterial conjugation TrbI-like protein YS110_RS03280 PF00005 ABC transporter YS110_RS03280 PF12848 ABC transporter YS110_RS03285 PF05175 Methyltransferase small domain YS110_RS03290 PF07687 Peptidase dimerisation domain YS110_RS03290 PF01546 Peptidase family M20/M25/M40 YS110_RS03295 PF00437 Type II/IV secretion system protein YS110_RS03300 PF14602 Hexapeptide repeat of succinyl-transferase YS110_RS03300 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal YS110_RS03305 PF00155 Aminotransferase class I and II YS110_RS03310 PF00672 HAMP domain YS110_RS03310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS03315 PF04060 Putative Fe-S cluster YS110_RS03325 PF01207 Dihydrouridine synthase (Dus) YS110_RS03330 PF01262 Alanine dehydrogenase/PNT, C-terminal domain YS110_RS03330 PF05222 Alanine dehydrogenase/PNT, N-terminal domain YS110_RS03330 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch YS110_RS03335 PF02233 NAD(P) transhydrogenase beta subunit YS110_RS03340 PF09383 NIL domain YS110_RS03340 PF00005 ABC transporter YS110_RS03345 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS03350 PF03180 NLPA lipoprotein YS110_RS03355 PF03358 NADPH-dependent FMN reductase YS110_RS03370 PF01292 Prokaryotic cytochrome b561 YS110_RS03380 PF01625 Peptide methionine sulfoxide reductase YS110_RS03390 PF00593 TonB dependent receptor YS110_RS03390 PF07715 TonB-dependent Receptor Plug Domain YS110_RS03395 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_RS03410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region YS110_RS03410 PF01243 Pyridoxamine 5'-phosphate oxidase YS110_RS03425 PF17954 Quercetinase C-terminal cupin domain YS110_RS03425 PF02678 Pirin YS110_RS03430 PF04264 YceI-like domain YS110_RS03440 PF01292 Prokaryotic cytochrome b561 YS110_RS03445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS03445 PF03466 LysR substrate binding domain YS110_RS03450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_RS03455 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term YS110_RS03455 PF12833 Helix-turn-helix domain YS110_RS03460 PF01568 Molydopterin dinucleotide binding domain YS110_RS03460 PF00384 Molybdopterin oxidoreductase YS110_RS03465 PF13247 4Fe-4S dicluster domain YS110_RS03475 PF02613 Nitrate reductase delta subunit YS110_RS03480 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS03480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS03480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS03495 PF06314 Acetoacetate decarboxylase (ADC) YS110_RS03530 PF01062 Bestrophin, RFP-TM, chloride channel YS110_RS03540 PF01022 Bacterial regulatory protein, arsR family YS110_RS03550 PF00873 AcrB/AcrD/AcrF family YS110_RS03555 PF02627 Carboxymuconolactone decarboxylase family YS110_RS03560 PF02321 Outer membrane efflux protein YS110_RS03565 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS03580 PF00581 Rhodanese-like domain YS110_RS03600 PF06968 Biotin and Thiamin Synthesis associated domain YS110_RS03600 PF04055 Radical SAM superfamily YS110_RS03615 PF02785 Biotin carboxylase C-terminal domain YS110_RS03615 PF00289 Biotin carboxylase, N-terminal domain YS110_RS03615 PF00364 Biotin-requiring enzyme YS110_RS03615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS03615 PF18140 Propionyl-coenzyme A carboxylase BT domain YS110_RS03625 PF01039 Carboxyl transferase domain YS110_RS03640 PF02310 B12 binding domain YS110_RS03640 PF01642 Methylmalonyl-CoA mutase YS110_RS03645 PF07729 FCD domain YS110_RS03645 PF00392 Bacterial regulatory proteins, gntR family YS110_RS03650 PF03707 Bacterial signalling protein N terminal repeat YS110_RS03650 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS03650 PF00563 EAL domain YS110_RS03655 PF00501 AMP-binding enzyme YS110_RS03665 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS03665 PF17866 AAA lid domain YS110_RS03670 PF00005 ABC transporter YS110_RS03670 PF12848 ABC transporter YS110_RS03675 PF00270 DEAD/DEAH box helicase YS110_RS03675 PF00271 Helicase conserved C-terminal domain YS110_RS03685 PF00501 AMP-binding enzyme YS110_RS03685 PF13193 AMP-binding enzyme C-terminal domain YS110_RS03690 PF00270 DEAD/DEAH box helicase YS110_RS03690 PF11898 Domain of unknown function (DUF3418) YS110_RS03690 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold YS110_RS03690 PF00271 Helicase conserved C-terminal domain YS110_RS03690 PF04408 Helicase associated domain (HA2) YS110_RS03700 PF01757 Acyltransferase family YS110_RS03705 PF00696 Amino acid kinase family YS110_RS03705 PF00583 Acetyltransferase (GNAT) family YS110_RS03725 PF01966 HD domain YS110_RS03730 PF02600 Disulfide bond formation protein DsbB YS110_RS03735 PF00005 ABC transporter YS110_RS03735 PF17850 CysA C-terminal regulatory domain YS110_RS03735 PF12857 TOBE-like domain YS110_RS03740 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS03745 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS03760 PF03466 LysR substrate binding domain YS110_RS03760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS03765 PF02525 Flavodoxin-like fold YS110_RS03775 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS03775 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YS110_RS03780 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YS110_RS03780 PF00364 Biotin-requiring enzyme YS110_RS03780 PF02817 e3 binding domain YS110_RS03785 PF17831 Pyruvate dehydrogenase E1 component middle domain YS110_RS03785 PF00456 Transketolase, thiamine diphosphate binding domain YS110_RS03790 PF00989 PAS fold YS110_RS03790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS03790 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS03795 PF00196 Bacterial regulatory proteins, luxR family YS110_RS03795 PF00072 Response regulator receiver domain YS110_RS03800 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YS110_RS03800 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YS110_RS03805 PF01432 Peptidase family M3 YS110_RS03815 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) YS110_RS03820 PF01180 Dihydroorotate dehydrogenase YS110_RS03840 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS03840 PF03707 Bacterial signalling protein N terminal repeat YS110_RS03840 PF00563 EAL domain YS110_RS03855 PF00929 Exonuclease YS110_RS03860 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS03865 PF00012 Hsp70 protein YS110_RS03870 PF07743 HSCB C-terminal oligomerisation domain YS110_RS03875 PF01521 Iron-sulphur cluster biosynthesis YS110_RS03880 PF01592 NifU-like N terminal domain YS110_RS03885 PF00266 Aminotransferase class-V YS110_RS03890 PF02082 Transcriptional regulator YS110_RS03895 PF00271 Helicase conserved C-terminal domain YS110_RS03895 PF04851 Type III restriction enzyme, res subunit YS110_RS03895 PF02151 UvrB/uvrC motif YS110_RS03895 PF12344 Ultra-violet resistance protein B YS110_RS03895 PF17757 UvrB interaction domain YS110_RS03905 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS03910 PF00155 Aminotransferase class I and II YS110_RS03920 PF02653 Branched-chain amino acid transport system / permease component YS110_RS03925 PF02653 Branched-chain amino acid transport system / permease component YS110_RS03925 PF11862 Domain of unknown function (DUF3382) YS110_RS03930 PF00005 ABC transporter YS110_RS03930 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS03935 PF00005 ABC transporter YS110_RS03950 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase YS110_RS03955 PF02515 CoA-transferase family III YS110_RS03960 PF00313 'Cold-shock' DNA-binding domain YS110_RS03970 PF08497 Radical SAM N-terminal YS110_RS03970 PF04055 Radical SAM superfamily YS110_RS03970 PF11842 Domain of unknown function (DUF3362) YS110_RS03975 PF13458 Periplasmic binding protein YS110_RS03980 PF02653 Branched-chain amino acid transport system / permease component YS110_RS03985 PF02653 Branched-chain amino acid transport system / permease component YS110_RS03985 PF11862 Domain of unknown function (DUF3382) YS110_RS03990 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS03990 PF00005 ABC transporter YS110_RS03995 PF00005 ABC transporter YS110_RS04000 PF01205 Uncharacterized protein family UPF0029 YS110_RS04000 PF09186 Domain of unknown function (DUF1949) YS110_RS04010 PF01435 Peptidase family M48 YS110_RS04020 PF00211 Adenylate and Guanylate cyclase catalytic domain YS110_RS04025 PF00893 Small Multidrug Resistance protein YS110_RS04030 PF02146 Sir2 family YS110_RS04035 PF00588 SpoU rRNA Methylase family YS110_RS04035 PF08032 RNA 2'-O ribose methyltransferase substrate binding YS110_RS04045 PF04454 Encapsulating protein for peroxidase YS110_RS04050 PF00756 Putative esterase YS110_RS04055 PF00107 Zinc-binding dehydrogenase YS110_RS04055 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS04060 PF02583 Metal-sensitive transcriptional repressor YS110_RS04065 PF00005 ABC transporter YS110_RS04070 PF13472 GDSL-like Lipase/Acylhydrolase family YS110_RS04085 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system YS110_RS04090 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_RS04100 PF01740 STAS domain YS110_RS04100 PF00916 Sulfate permease family YS110_RS04105 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS04110 PF10609 NUBPL iron-transfer P-loop NTPase YS110_RS04115 PF05726 Pirin C-terminal cupin domain YS110_RS04115 PF02678 Pirin YS110_RS04125 PF01593 Flavin containing amine oxidoreductase YS110_RS04130 PF00749 tRNA synthetases class I (E and Q), catalytic domain YS110_RS04135 PF02390 Putative methyltransferase YS110_RS04140 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS04145 PF02272 DHHA1 domain YS110_RS04145 PF01411 tRNA synthetases class II (A) YS110_RS04145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YS110_RS04150 PF00155 Aminotransferase class I and II YS110_RS04155 PF00202 Aminotransferase class-III YS110_RS04160 PF00005 ABC transporter YS110_RS04160 PF08402 TOBE domain YS110_RS04170 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS04175 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS04180 PF00171 Aldehyde dehydrogenase family YS110_RS04190 PF01557 Fumarylacetoacetate (FAA) hydrolase family YS110_RS04195 PF01494 FAD binding domain YS110_RS04205 PF01494 FAD binding domain YS110_RS04210 PF12697 Alpha/beta hydrolase family YS110_RS04225 PF02321 Outer membrane efflux protein YS110_RS04235 PF00005 ABC transporter YS110_RS04240 PF13533 Biotin-lipoyl like YS110_RS04260 PF01717 Cobalamin-independent synthase, Catalytic domain YS110_RS04260 PF08267 Cobalamin-independent synthase, N-terminal domain YS110_RS04265 PF03466 LysR substrate binding domain YS110_RS04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS04270 PF02436 Conserved carboxylase domain YS110_RS04270 PF00682 HMGL-like YS110_RS04270 PF02785 Biotin carboxylase C-terminal domain YS110_RS04270 PF00364 Biotin-requiring enzyme YS110_RS04270 PF00289 Biotin carboxylase, N-terminal domain YS110_RS04270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS04275 PF00330 Aconitase family (aconitate hydratase) YS110_RS04275 PF00694 Aconitase C-terminal domain YS110_RS04285 PF04303 PrpF protein YS110_RS04290 PF00694 Aconitase C-terminal domain YS110_RS04290 PF00330 Aconitase family (aconitate hydratase) YS110_RS04295 PF00285 Citrate synthase, C-terminal domain YS110_RS04305 PF01381 Helix-turn-helix YS110_RS04305 PF06114 IrrE N-terminal-like domain YS110_RS04305 PF09856 Predicted transcriptional regulator (DUF2083) YS110_RS04340 PF13005 zinc-finger binding domain of transposase IS66 YS110_RS04340 PF03050 Transposase IS66 family YS110_RS04340 PF13817 IS66 C-terminal element YS110_RS04340 PF13007 Transposase C of IS166 homeodomain YS110_RS04370 PF02371 Transposase IS116/IS110/IS902 family YS110_RS04370 PF01548 Transposase YS110_RS04375 PF09346 SMI1 / KNR4 family (SUKH-1) YS110_RS04395 PF03423 Carbohydrate binding domain (family 25) YS110_RS04395 PF00041 Fibronectin type III domain YS110_RS04395 PF03065 Glycosyl hydrolase family 57 YS110_RS04415 PF00849 RNA pseudouridylate synthase YS110_RS04425 PF00929 Exonuclease YS110_RS04425 PF08411 Exonuclease C-terminal YS110_RS04445 PF07715 TonB-dependent Receptor Plug Domain YS110_RS04445 PF00593 TonB dependent receptor YS110_RS04450 PF13406 Transglycosylase SLT domain YS110_RS04475 PF07724 AAA domain (Cdc48 subfamily) YS110_RS04475 PF17871 AAA lid domain YS110_RS04475 PF02861 Clp amino terminal domain, pathogenicity island component YS110_RS04475 PF10431 C-terminal, D2-small domain, of ClpB protein YS110_RS04475 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS04480 PF02617 ATP-dependent Clp protease adaptor protein ClpS YS110_RS04485 PF01336 OB-fold nucleic acid binding domain YS110_RS04485 PF14579 Helix-hairpin-helix motif YS110_RS04485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YS110_RS04485 PF07733 Bacterial DNA polymerase III alpha NTPase domain YS110_RS04485 PF02811 PHP domain YS110_RS04490 PF13525 Outer membrane lipoprotein YS110_RS04510 PF01144 Coenzyme A transferase YS110_RS04515 PF01144 Coenzyme A transferase YS110_RS04530 PF02646 RmuC family YS110_RS04535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YS110_RS04535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YS110_RS04545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family YS110_RS04545 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain YS110_RS04555 PF09361 Phasin protein YS110_RS04560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase YS110_RS04565 PF04376 Arginine-tRNA-protein transferase, N terminus YS110_RS04565 PF04377 Arginine-tRNA-protein transferase, C terminus YS110_RS04570 PF09339 IclR helix-turn-helix domain YS110_RS04570 PF01614 Bacterial transcriptional regulator YS110_RS04575 PF00296 Luciferase-like monooxygenase YS110_RS04580 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS04580 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS04580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS04585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS04585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS04590 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS04595 PF00005 ABC transporter YS110_RS04595 PF09383 NIL domain YS110_RS04600 PF03180 NLPA lipoprotein YS110_RS04605 PF03180 NLPA lipoprotein YS110_RS04610 PF03180 NLPA lipoprotein YS110_RS04615 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_RS04620 PF02780 Transketolase, C-terminal domain YS110_RS04620 PF13292 1-deoxy-D-xylulose-5-phosphate synthase YS110_RS04620 PF02779 Transketolase, pyrimidine binding domain YS110_RS04625 PF00348 Polyprenyl synthetase YS110_RS04630 PF02609 Exonuclease VII small subunit YS110_RS04635 PF00355 Rieske [2Fe-2S] domain YS110_RS04635 PF00848 Ring hydroxylating alpha subunit (catalytic domain) YS110_RS04650 PF00581 Rhodanese-like domain YS110_RS04655 PF05247 Flagellar transcriptional activator (FlhD) YS110_RS04660 PF05280 Flagellar transcriptional activator (FlhC) YS110_RS04675 PF00311 Phosphoenolpyruvate carboxylase YS110_RS04680 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain YS110_RS04680 PF03900 Porphobilinogen deaminase, C-terminal domain YS110_RS04690 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase YS110_RS04700 PF00206 Lyase YS110_RS04700 PF10415 Fumarase C C-terminus YS110_RS04705 PF00199 Catalase YS110_RS04705 PF06628 Catalase-related immune-responsive YS110_RS04735 PF01212 Beta-eliminating lyase YS110_RS04745 PF02653 Branched-chain amino acid transport system / permease component YS110_RS04750 PF00005 ABC transporter YS110_RS04755 PF00324 Amino acid permease YS110_RS04765 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin YS110_RS04770 PF01850 PIN domain YS110_RS04775 PF01037 Lrp/AsnC ligand binding domain YS110_RS04775 PF13404 AsnC-type helix-turn-helix domain YS110_RS04780 PF00501 AMP-binding enzyme YS110_RS04780 PF13193 AMP-binding enzyme C-terminal domain YS110_RS04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS04790 PF03466 LysR substrate binding domain YS110_RS04795 PF08669 Glycine cleavage T-protein C-terminal barrel domain YS110_RS04795 PF01571 Aminomethyltransferase folate-binding domain YS110_RS04800 PF01597 Glycine cleavage H-protein YS110_RS04805 PF02347 Glycine cleavage system P-protein YS110_RS04855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_RS04855 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YS110_RS04860 PF13411 MerR HTH family regulatory protein YS110_RS04865 PF01757 Acyltransferase family YS110_RS04875 PF07733 Bacterial DNA polymerase III alpha NTPase domain YS110_RS04875 PF17657 Bacterial DNA polymerase III alpha subunit finger domain YS110_RS04875 PF14579 Helix-hairpin-helix motif YS110_RS04875 PF02811 PHP domain YS110_RS04920 PF01381 Helix-turn-helix YS110_RS04995 PF00216 Bacterial DNA-binding protein YS110_RS05005 PF00271 Helicase conserved C-terminal domain YS110_RS05015 PF01844 HNH endonuclease YS110_RS05030 PF03743 Bacterial conjugation TrbI-like protein YS110_RS05035 PF03524 Conjugal transfer protein YS110_RS05045 PF04610 TrbL/VirB6 plasmid conjugal transfer protein YS110_RS05060 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_RS05075 PF00437 Type II/IV secretion system protein YS110_RS05085 PF02534 Type IV secretory system Conjugative DNA transfer YS110_RS05090 PF03466 LysR substrate binding domain YS110_RS05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS05100 PF02492 CobW/HypB/UreG, nucleotide-binding domain YS110_RS05100 PF07683 Cobalamin synthesis protein cobW C-terminal domain YS110_RS05120 PF05378 Hydantoinase/oxoprolinase N-terminal region YS110_RS05120 PF01968 Hydantoinase/oxoprolinase YS110_RS05125 PF08882 Acetone carboxylase gamma subunit YS110_RS05130 PF05378 Hydantoinase/oxoprolinase N-terminal region YS110_RS05130 PF01968 Hydantoinase/oxoprolinase YS110_RS05135 PF13426 PAS domain YS110_RS05135 PF02954 Bacterial regulatory protein, Fis family YS110_RS05135 PF00158 Sigma-54 interaction domain YS110_RS05140 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS05140 PF00107 Zinc-binding dehydrogenase YS110_RS05150 PF10502 Signal peptidase, peptidase S26 YS110_RS05165 PF13614 AAA domain YS110_RS05190 PF01381 Helix-turn-helix YS110_RS05200 PF05284 Protein of unknown function (DUF736) YS110_RS05210 PF17762 HTH domain found in ParB protein YS110_RS05210 PF02195 ParB-like nuclease domain YS110_RS05215 PF06067 Domain of unknown function (DUF932) YS110_RS05255 PF00270 DEAD/DEAH box helicase YS110_RS05255 PF00271 Helicase conserved C-terminal domain YS110_RS05260 PF13356 Arm DNA-binding domain YS110_RS05260 PF00589 Phage integrase family YS110_RS05270 PF13419 Haloacid dehalogenase-like hydrolase YS110_RS05285 PF00899 ThiF family YS110_RS05295 PF00691 OmpA family YS110_RS05300 PF04052 TolB amino-terminal domain YS110_RS05300 PF07676 WD40-like Beta Propeller Repeat YS110_RS05305 PF00005 ABC transporter YS110_RS05305 PF00664 ABC transporter transmembrane region YS110_RS05315 PF01026 TatD related DNase YS110_RS05325 PF09115 DNA polymerase III, delta subunit, C terminal YS110_RS05330 PF02223 Thymidylate kinase YS110_RS05335 PF02618 YceG-like family YS110_RS05340 PF01571 Aminomethyltransferase folate-binding domain YS110_RS05345 PF07715 TonB-dependent Receptor Plug Domain YS110_RS05345 PF07660 Secretin and TonB N terminus short domain YS110_RS05345 PF00593 TonB dependent receptor YS110_RS05360 PF00999 Sodium/hydrogen exchanger family YS110_RS05370 PF07859 alpha/beta hydrolase fold YS110_RS05380 PF00465 Iron-containing alcohol dehydrogenase YS110_RS05385 PF08668 HDOD domain YS110_RS05390 PF17674 HHH domain YS110_RS05390 PF00575 S1 RNA binding domain YS110_RS05390 PF09371 Tex-like protein N-terminal domain YS110_RS05390 PF16921 Tex protein YqgF-like domain YS110_RS05415 PF00106 short chain dehydrogenase YS110_RS05420 PF16884 N-terminal domain of oxidoreductase YS110_RS05420 PF00107 Zinc-binding dehydrogenase YS110_RS05435 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS05435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS05435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS05435 PF12806 Acetyl-CoA dehydrogenase C-terminal like YS110_RS05440 PF00892 EamA-like transporter family YS110_RS05445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YS110_RS05445 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS05495 PF11940 Domain of unknown function (DUF3458) Ig-like fold YS110_RS05495 PF17432 Domain of unknown function (DUF3458_C) ARM repeats YS110_RS05495 PF01433 Peptidase family M1 domain YS110_RS05500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain YS110_RS05505 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS05505 PF03707 Bacterial signalling protein N terminal repeat YS110_RS05505 PF00563 EAL domain YS110_RS05510 PF00919 Uncharacterized protein family UPF0004 YS110_RS05510 PF04055 Radical SAM superfamily YS110_RS05510 PF18693 TRAM domain YS110_RS05515 PF12169 DNA polymerase III subunits gamma and tau domain III YS110_RS05515 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding YS110_RS05515 PF12170 DNA polymerase III tau subunit V interacting with alpha YS110_RS05520 PF02575 YbaB/EbfC DNA-binding family YS110_RS05525 PF02132 RecR protein YS110_RS05525 PF13662 Toprim domain YS110_RS05535 PF01464 Transglycosylase SLT domain YS110_RS05535 PF01476 LysM domain YS110_RS05540 PF00753 Metallo-beta-lactamase superfamily YS110_RS05540 PF16123 Hydroxyacylglutathione hydrolase C-terminus YS110_RS05545 PF01209 ubiE/COQ5 methyltransferase family YS110_RS05550 PF00075 RNase H YS110_RS05555 PF00701 Dihydrodipicolinate synthetase family YS110_RS05560 PF06804 NlpB/DapX lipoprotein YS110_RS05575 PF08007 Cupin superfamily protein YS110_RS05580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_RS05590 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS05590 PF03707 Bacterial signalling protein N terminal repeat YS110_RS05590 PF00563 EAL domain YS110_RS05595 PF02321 Outer membrane efflux protein YS110_RS05600 PF00873 AcrB/AcrD/AcrF family YS110_RS05605 PF00873 AcrB/AcrD/AcrF family YS110_RS05610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS05615 PF03459 TOBE domain YS110_RS05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS05625 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS05630 PF03459 TOBE domain YS110_RS05630 PF00005 ABC transporter YS110_RS05640 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YS110_RS05645 PF00296 Luciferase-like monooxygenase YS110_RS05655 PF17876 Cold shock domain YS110_RS05655 PF08461 Ribonuclease R winged-helix domain YS110_RS05655 PF08206 Ribonuclease B OB domain YS110_RS05655 PF00773 RNB domain YS110_RS05655 PF00575 S1 RNA binding domain YS110_RS05680 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YS110_RS05680 PF01464 Transglycosylase SLT domain YS110_RS05685 PF00464 Serine hydroxymethyltransferase YS110_RS05690 PF03477 ATP cone domain YS110_RS05695 PF00149 Calcineurin-like phosphoesterase YS110_RS05700 PF01264 Chorismate synthase YS110_RS05710 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_RS05715 PF00561 alpha/beta hydrolase fold YS110_RS05720 PF03631 Virulence factor BrkB YS110_RS05730 PF02913 FAD linked oxidases, C-terminal domain YS110_RS05730 PF01565 FAD binding domain YS110_RS05735 PF07715 TonB-dependent Receptor Plug Domain YS110_RS05735 PF00593 TonB dependent receptor YS110_RS05745 PF01850 PIN domain YS110_RS05755 PF02371 Transposase IS116/IS110/IS902 family YS110_RS05755 PF01548 Transposase YS110_RS05760 PF04542 Sigma-70 region 2 YS110_RS05760 PF08281 Sigma-70, region 4 YS110_RS05765 PF00303 Thymidylate synthase YS110_RS05775 PF00186 Dihydrofolate reductase YS110_RS05800 PF00108 Thiolase, N-terminal domain YS110_RS05800 PF02803 Thiolase, C-terminal domain YS110_RS05835 PF00749 tRNA synthetases class I (E and Q), catalytic domain YS110_RS05840 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_RS05845 PF00156 Phosphoribosyl transferase domain YS110_RS05860 PF02875 Mur ligase family, glutamate ligase domain YS110_RS05860 PF08245 Mur ligase middle domain YS110_RS05865 PF03960 ArsC family YS110_RS05875 PF06865 Pyrimidine/purine nucleoside phosphorylase YS110_RS05880 PF00764 Arginosuccinate synthase YS110_RS05885 PF02592 Putative vitamin uptake transporter YS110_RS05895 PF12680 SnoaL-like domain YS110_RS05895 PF08281 Sigma-70, region 4 YS110_RS05895 PF04542 Sigma-70 region 2 YS110_RS05900 PF02627 Carboxymuconolactone decarboxylase family YS110_RS05905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS05905 PF03466 LysR substrate binding domain YS110_RS05930 PF07660 Secretin and TonB N terminus short domain YS110_RS05930 PF00593 TonB dependent receptor YS110_RS05930 PF07715 TonB-dependent Receptor Plug Domain YS110_RS05935 PF16220 Domain of unknown function (DUF4880) YS110_RS05935 PF04773 FecR protein YS110_RS05940 PF08281 Sigma-70, region 4 YS110_RS05940 PF04542 Sigma-70 region 2 YS110_RS05945 PF01565 FAD binding domain YS110_RS05945 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain YS110_RS05950 PF04461 Protein of unknown function (DUF520) YS110_RS05965 PF02660 Glycerol-3-phosphate acyltransferase YS110_RS05970 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS05985 PF13443 Cro/C1-type HTH DNA-binding domain YS110_RS05995 PF00248 Aldo/keto reductase family YS110_RS06000 PF00561 alpha/beta hydrolase fold YS110_RS06020 PF13614 AAA domain YS110_RS06075 PF01131 DNA topoisomerase YS110_RS06075 PF01751 Toprim domain YS110_RS06130 PF08267 Cobalamin-independent synthase, N-terminal domain YS110_RS06130 PF01717 Cobalamin-independent synthase, Catalytic domain YS110_RS06145 PF01048 Phosphorylase superfamily YS110_RS06185 PF02899 Phage integrase, N-terminal SAM-like domain YS110_RS06185 PF00589 Phage integrase family YS110_RS06365 PF02371 Transposase IS116/IS110/IS902 family YS110_RS06365 PF01548 Transposase YS110_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS06415 PF00005 ABC transporter YS110_RS06425 PF01464 Transglycosylase SLT domain YS110_RS06425 PF01551 Peptidase family M23 YS110_RS06425 PF10145 Phage-related minor tail protein YS110_RS06435 PF00482 Type II secretion system (T2SS), protein F YS110_RS06440 PF00437 Type II/IV secretion system protein YS110_RS06445 PF00263 Bacterial type II and III secretion system protein YS110_RS06445 PF03958 Bacterial type II/III secretion system short domain YS110_RS06475 PF11612 Type II secretion system (T2SS), protein J YS110_RS06475 PF07963 Prokaryotic N-terminal methylation motif YS110_RS06480 PF07963 Prokaryotic N-terminal methylation motif YS110_RS06480 PF02501 Type II secretion system (T2SS), protein I YS110_RS06485 PF12019 Type II transport protein GspH YS110_RS06485 PF07963 Prokaryotic N-terminal methylation motif YS110_RS06490 PF08334 Type II secretion system (T2SS), protein G YS110_RS06490 PF07963 Prokaryotic N-terminal methylation motif YS110_RS06580 PF13175 AAA ATPase domain YS110_RS06585 PF13361 UvrD-like helicase C-terminal domain YS110_RS06585 PF00580 UvrD/REP helicase N-terminal domain YS110_RS06585 PF00570 HRDC domain YS110_RS06590 PF01475 Ferric uptake regulator family YS110_RS06595 PF00216 Bacterial DNA-binding protein YS110_RS06610 PF13411 MerR HTH family regulatory protein YS110_RS06615 PF00216 Bacterial DNA-binding protein YS110_RS06620 PF01588 Putative tRNA binding domain YS110_RS06620 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain YS110_RS06620 PF03147 Ferredoxin-fold anticodon binding domain YS110_RS06620 PF03484 tRNA synthetase B5 domain YS110_RS06620 PF03483 B3/4 domain YS110_RS06625 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain YS110_RS06625 PF01409 tRNA synthetases class II core domain (F) YS110_RS06630 PF00453 Ribosomal protein L20 YS110_RS06635 PF01632 Ribosomal protein L35 YS110_RS06640 PF00707 Translation initiation factor IF-3, C-terminal domain YS110_RS06640 PF05198 Translation initiation factor IF-3, N-terminal domain YS110_RS06645 PF03129 Anticodon binding domain YS110_RS06645 PF02824 TGS domain YS110_RS06645 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YS110_RS06645 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain YS110_RS06650 PF00463 Isocitrate lyase family YS110_RS06660 PF03737 Aldolase/RraA YS110_RS06680 PF01618 MotA/TolQ/ExbB proton channel family YS110_RS06685 PF02472 Biopolymer transport protein ExbD/TolR YS110_RS06695 PF03471 Transporter associated domain YS110_RS06695 PF03741 Integral membrane protein TerC family YS110_RS06700 PF00679 Elongation factor G C-terminus YS110_RS06700 PF00009 Elongation factor Tu GTP binding domain YS110_RS06700 PF03144 Elongation factor Tu domain 2 YS110_RS06705 PF01509 TruB family pseudouridylate synthase (N terminal domain) YS110_RS06705 PF16198 tRNA pseudouridylate synthase B C-terminal domain YS110_RS06710 PF02033 Ribosome-binding factor A YS110_RS06715 PF00009 Elongation factor Tu GTP binding domain YS110_RS06715 PF04760 Translation initiation factor IF-2, N-terminal region YS110_RS06715 PF08364 Bacterial translation initiation factor IF-2 associated region YS110_RS06715 PF11987 Translation-initiation factor 2 YS110_RS06720 PF00575 S1 RNA binding domain YS110_RS06720 PF13184 NusA-like KH domain YS110_RS06720 PF08529 NusA N-terminal domain YS110_RS06725 PF02576 RimP N-terminal domain YS110_RS06735 PF00593 TonB dependent receptor YS110_RS06735 PF07715 TonB-dependent Receptor Plug Domain YS110_RS06745 PF10415 Fumarase C C-terminus YS110_RS06745 PF00206 Lyase YS110_RS06750 PF04545 Sigma-70, region 4 YS110_RS06750 PF04542 Sigma-70 region 2 YS110_RS06755 PF00593 TonB dependent receptor YS110_RS06755 PF07660 Secretin and TonB N terminus short domain YS110_RS06755 PF07715 TonB-dependent Receptor Plug Domain YS110_RS06770 PF00005 ABC transporter YS110_RS06770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_RS06775 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_RS06775 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS06800 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS06810 PF03707 Bacterial signalling protein N terminal repeat YS110_RS06810 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS06810 PF00563 EAL domain YS110_RS06815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_RS06820 PF01774 UreD urease accessory protein YS110_RS06830 PF02653 Branched-chain amino acid transport system / permease component YS110_RS06840 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS06840 PF00005 ABC transporter YS110_RS06845 PF00005 ABC transporter YS110_RS06850 PF00072 Response regulator receiver domain YS110_RS06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS06855 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_RS06855 PF00072 Response regulator receiver domain YS110_RS06855 PF00989 PAS fold YS110_RS06855 PF01627 Hpt domain YS110_RS06855 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS06860 PF00547 Urease, gamma subunit YS110_RS06870 PF00699 Urease beta subunit YS110_RS06875 PF00449 Urease alpha-subunit, N-terminal domain YS110_RS06875 PF01979 Amidohydrolase family YS110_RS06885 PF01730 UreF YS110_RS06890 PF02492 CobW/HypB/UreG, nucleotide-binding domain YS110_RS06900 PF04325 Protein of unknown function (DUF465) YS110_RS06905 PF01068 ATP dependent DNA ligase domain YS110_RS06905 PF14743 DNA ligase OB-like domain YS110_RS06910 PF01276 Orn/Lys/Arg decarboxylase, major domain YS110_RS06910 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain YS110_RS06910 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain YS110_RS06920 PF01145 SPFH domain / Band 7 family YS110_RS06930 PF06463 Molybdenum Cofactor Synthesis C YS110_RS06930 PF04055 Radical SAM superfamily YS110_RS06935 PF12804 MobA-like NTP transferase domain YS110_RS06945 PF00994 Probable molybdopterin binding domain YS110_RS06945 PF03454 MoeA C-terminal region (domain IV) YS110_RS06945 PF03453 MoeA N-terminal region (domain I and II) YS110_RS06955 PF01037 Lrp/AsnC ligand binding domain YS110_RS06960 PF00892 EamA-like transporter family YS110_RS06965 PF02371 Transposase IS116/IS110/IS902 family YS110_RS06965 PF01548 Transposase YS110_RS06970 PF01609 Transposase DDE domain YS110_RS06970 PF05598 Transposase domain (DUF772) YS110_RS06975 PF02371 Transposase IS116/IS110/IS902 family YS110_RS06975 PF01548 Transposase YS110_RS06990 PF03788 LrgA family YS110_RS07000 PF00155 Aminotransferase class I and II YS110_RS07000 PF00392 Bacterial regulatory proteins, gntR family YS110_RS07005 PF01654 Cytochrome bd terminal oxidase subunit I YS110_RS07010 PF02322 Cytochrome bd terminal oxidase subunit II YS110_RS07020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain YS110_RS07020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain YS110_RS07025 PF12557 Cob(I)alamin adenosyltransferase N terminal YS110_RS07025 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YS110_RS07040 PF09345 Domain of unknown function (DUF1987) YS110_RS07045 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS07055 PF00005 ABC transporter YS110_RS07060 PF01032 FecCD transport family YS110_RS07065 PF01497 Periplasmic binding protein YS110_RS07070 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase YS110_RS07075 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YS110_RS07075 PF07685 CobB/CobQ-like glutamine amidotransferase domain YS110_RS07080 PF07715 TonB-dependent Receptor Plug Domain YS110_RS07080 PF00593 TonB dependent receptor YS110_RS07095 PF01925 Sulfite exporter TauE/SafE YS110_RS07100 PF03707 Bacterial signalling protein N terminal repeat YS110_RS07100 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS07100 PF00563 EAL domain YS110_RS07105 PF00072 Response regulator receiver domain YS110_RS07115 PF06969 HemN C-terminal domain YS110_RS07115 PF04055 Radical SAM superfamily YS110_RS07120 PF13545 Crp-like helix-turn-helix domain YS110_RS07120 PF00027 Cyclic nucleotide-binding domain YS110_RS07130 PF12801 4Fe-4S binding domain YS110_RS07130 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase YS110_RS07130 PF13746 4Fe-4S dicluster domain YS110_RS07135 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS07135 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP YS110_RS07150 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_RS07160 PF00403 Heavy-metal-associated domain YS110_RS07175 PF00749 tRNA synthetases class I (E and Q), catalytic domain YS110_RS07175 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain YS110_RS07195 PF00849 RNA pseudouridylate synthase YS110_RS07200 PF00565 Staphylococcal nuclease homologue YS110_RS07205 PF00849 RNA pseudouridylate synthase YS110_RS07210 PF01926 50S ribosome-binding GTPase YS110_RS07220 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS07220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS07220 PF00672 HAMP domain YS110_RS07225 PF12805 FUSC-like inner membrane protein yccS YS110_RS07230 PF04262 Glutamate-cysteine ligase YS110_RS07235 PF00106 short chain dehydrogenase YS110_RS07240 PF01063 Amino-transferase class IV YS110_RS07245 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS07245 PF00970 Oxidoreductase FAD-binding domain YS110_RS07250 PF01548 Transposase YS110_RS07250 PF02371 Transposase IS116/IS110/IS902 family YS110_RS07255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase YS110_RS07255 PF00925 GTP cyclohydrolase II YS110_RS07260 PF00885 6,7-dimethyl-8-ribityllumazine synthase YS110_RS07265 PF01029 NusB family YS110_RS07270 PF00155 Aminotransferase class I and II YS110_RS07275 PF03061 Thioesterase superfamily YS110_RS07280 PF01618 MotA/TolQ/ExbB proton channel family YS110_RS07285 PF02472 Biopolymer transport protein ExbD/TolR YS110_RS07295 PF00083 Sugar (and other) transporter YS110_RS07295 PF07690 Major Facilitator Superfamily YS110_RS07300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YS110_RS07300 PF06481 COX Aromatic Rich Motif YS110_RS07305 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_RS07310 PF00510 Cytochrome c oxidase subunit III YS110_RS07315 PF03626 Prokaryotic Cytochrome C oxidase subunit IV YS110_RS07325 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS07330 PF00072 Response regulator receiver domain YS110_RS07345 PF04542 Sigma-70 region 2 YS110_RS07345 PF08281 Sigma-70, region 4 YS110_RS07350 PF04773 FecR protein YS110_RS07350 PF16220 Domain of unknown function (DUF4880) YS110_RS07365 PF07660 Secretin and TonB N terminus short domain YS110_RS07365 PF07715 TonB-dependent Receptor Plug Domain YS110_RS07365 PF00593 TonB dependent receptor YS110_RS07370 PF16325 Peptidase family U32 C-terminal domain YS110_RS07370 PF01136 Peptidase family U32 YS110_RS07375 PF00106 short chain dehydrogenase YS110_RS07380 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS07385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS07385 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS07385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS07390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS07390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS07390 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS07395 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS07395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_RS07395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_RS07400 PF00108 Thiolase, N-terminal domain YS110_RS07400 PF02803 Thiolase, C-terminal domain YS110_RS07410 PF12802 MarR family YS110_RS07415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS07415 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS07415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS07420 PF00501 AMP-binding enzyme YS110_RS07420 PF13193 AMP-binding enzyme C-terminal domain YS110_RS07425 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS07440 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS07440 PF00005 ABC transporter YS110_RS07445 PF00005 ABC transporter YS110_RS07450 PF13458 Periplasmic binding protein YS110_RS07455 PF13609 Gram-negative porin YS110_RS07460 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS07460 PF00107 Zinc-binding dehydrogenase YS110_RS07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS07465 PF03466 LysR substrate binding domain YS110_RS07470 PF07690 Major Facilitator Superfamily YS110_RS07480 PF00501 AMP-binding enzyme YS110_RS07480 PF13193 AMP-binding enzyme C-terminal domain YS110_RS07485 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS07495 PF01790 Prolipoprotein diacylglyceryl transferase YS110_RS07500 PF00210 Ferritin-like domain YS110_RS07505 PF00258 Flavodoxin YS110_RS07510 PF00920 Dehydratase family YS110_RS07520 PF00034 Cytochrome c YS110_RS07525 PF16177 Acetyl-coenzyme A synthetase N-terminus YS110_RS07525 PF00501 AMP-binding enzyme YS110_RS07525 PF13193 AMP-binding enzyme C-terminal domain YS110_RS07530 PF00005 ABC transporter YS110_RS07530 PF00571 CBS domain YS110_RS07535 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS07540 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YS110_RS07550 PF02694 Uncharacterised BCR, YnfA/UPF0060 family YS110_RS07570 PF13533 Biotin-lipoyl like YS110_RS07580 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_RS07605 PF07730 Histidine kinase YS110_RS07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS07605 PF00672 HAMP domain YS110_RS07610 PF00072 Response regulator receiver domain YS110_RS07610 PF00196 Bacterial regulatory proteins, luxR family YS110_RS07625 PF00561 alpha/beta hydrolase fold YS110_RS07635 PF08501 Shikimate dehydrogenase substrate binding domain YS110_RS07635 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YS110_RS07635 PF01488 Shikimate / quinate 5-dehydrogenase YS110_RS07640 PF00171 Aldehyde dehydrogenase family YS110_RS07650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain YS110_RS07650 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS07655 PF02817 e3 binding domain YS110_RS07655 PF00364 Biotin-requiring enzyme YS110_RS07655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YS110_RS07665 PF00676 Dehydrogenase E1 component YS110_RS07675 PF00005 ABC transporter YS110_RS07680 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS07680 PF00005 ABC transporter YS110_RS07690 PF02653 Branched-chain amino acid transport system / permease component YS110_RS07695 PF13458 Periplasmic binding protein YS110_RS07700 PF00392 Bacterial regulatory proteins, gntR family YS110_RS07700 PF07729 FCD domain YS110_RS07710 PF00133 tRNA synthetases class I (I, L, M and V) YS110_RS07710 PF10458 Valyl tRNA synthetase tRNA binding arm YS110_RS07710 PF08264 Anticodon-binding domain of tRNA YS110_RS07715 PF00483 Nucleotidyl transferase YS110_RS07735 PF02146 Sir2 family YS110_RS07770 PF01206 Sulfurtransferase TusA YS110_RS07775 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain YS110_RS07775 PF00293 NUDIX domain YS110_RS07775 PF09297 NADH pyrophosphatase zinc ribbon domain YS110_RS07780 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS07795 PF00875 DNA photolyase YS110_RS07795 PF03441 FAD binding domain of DNA photolyase YS110_RS07800 PF02798 Glutathione S-transferase, N-terminal domain YS110_RS07805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS07805 PF03466 LysR substrate binding domain YS110_RS07810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS07810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS07810 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS07815 PF02515 CoA-transferase family III YS110_RS07830 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS07830 PF03707 Bacterial signalling protein N terminal repeat YS110_RS07830 PF00563 EAL domain YS110_RS07835 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_RS07840 PF00072 Response regulator receiver domain YS110_RS07845 PF00672 HAMP domain YS110_RS07845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS07845 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS07845 PF01627 Hpt domain YS110_RS07845 PF00072 Response regulator receiver domain YS110_RS07845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YS110_RS07850 PF03707 Bacterial signalling protein N terminal repeat YS110_RS07850 PF00563 EAL domain YS110_RS07850 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS07855 PF05190 MutS family domain IV YS110_RS07855 PF05188 MutS domain II YS110_RS07855 PF05192 MutS domain III YS110_RS07855 PF00488 MutS domain V YS110_RS07855 PF01624 MutS domain I YS110_RS07860 PF00672 HAMP domain YS110_RS07860 PF17200 Single Cache domain 2 YS110_RS07860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS07875 PF08448 PAS fold YS110_RS07875 PF08447 PAS fold YS110_RS07875 PF00563 EAL domain YS110_RS07875 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS07880 PF02673 Bacitracin resistance protein BacA YS110_RS07885 PF06580 Histidine kinase YS110_RS07885 PF07694 5TMR of 5TMR-LYT YS110_RS07890 PF00072 Response regulator receiver domain YS110_RS07890 PF04397 LytTr DNA-binding domain YS110_RS07920 PF00553 Cellulose binding domain YS110_RS07920 PF00942 Cellulose binding domain YS110_RS07920 PF00041 Fibronectin type III domain YS110_RS07920 PF00759 Glycosyl hydrolase family 9 YS110_RS07925 PF12833 Helix-turn-helix domain YS110_RS07960 PF03435 Saccharopine dehydrogenase NADP binding domain YS110_RS07980 PF00005 ABC transporter YS110_RS07990 PF00692 dUTPase YS110_RS07995 PF02441 Flavoprotein YS110_RS07995 PF04127 DNA / pantothenate metabolism flavoprotein YS110_RS08000 PF06418 CTP synthase N-terminus YS110_RS08000 PF00117 Glutamine amidotransferase class-I YS110_RS08005 PF00793 DAHP synthetase I family YS110_RS08010 PF00113 Enolase, C-terminal TIM barrel domain YS110_RS08010 PF03952 Enolase, N-terminal domain YS110_RS08015 PF04977 Septum formation initiator YS110_RS08020 PF02785 Biotin carboxylase C-terminal domain YS110_RS08020 PF00289 Biotin carboxylase, N-terminal domain YS110_RS08020 PF00364 Biotin-requiring enzyme YS110_RS08020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS08030 PF03746 LamB/YcsF family YS110_RS08035 PF00557 Metallopeptidase family M24 YS110_RS08045 PF00005 ABC transporter YS110_RS08050 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS08055 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS08060 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_RS08075 PF07715 TonB-dependent Receptor Plug Domain YS110_RS08075 PF00593 TonB dependent receptor YS110_RS08075 PF07660 Secretin and TonB N terminus short domain YS110_RS08080 PF01430 Hsp33 protein YS110_RS08085 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_RS08090 PF04305 Protein of unknown function (DUF455) YS110_RS08095 PF00563 EAL domain YS110_RS08095 PF08668 HDOD domain YS110_RS08100 PF00563 EAL domain YS110_RS08100 PF08668 HDOD domain YS110_RS08105 PF02899 Phage integrase, N-terminal SAM-like domain YS110_RS08105 PF00589 Phage integrase family YS110_RS08110 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YS110_RS08110 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain YS110_RS08120 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS08130 PF08331 Domain of unknown function (DUF1730) YS110_RS08135 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE YS110_RS08140 PF11741 AMIN domain YS110_RS08140 PF01520 N-acetylmuramoyl-L-alanine amidase YS110_RS08145 PF05552 Conserved TM helix YS110_RS08145 PF00924 Mechanosensitive ion channel YS110_RS08155 PF09335 SNARE associated Golgi protein YS110_RS08160 PF01119 DNA mismatch repair protein, C-terminal domain YS110_RS08160 PF08676 MutL C terminal dimerisation domain YS110_RS08165 PF00486 Transcriptional regulatory protein, C terminal YS110_RS08165 PF00072 Response regulator receiver domain YS110_RS08170 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS08170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS08185 PF00873 AcrB/AcrD/AcrF family YS110_RS08195 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YS110_RS08195 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YS110_RS08210 PF02653 Branched-chain amino acid transport system / permease component YS110_RS08225 PF00005 ABC transporter YS110_RS08230 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS08230 PF00005 ABC transporter YS110_RS08245 PF00361 Proton-conducting membrane transporter YS110_RS08250 PF00361 Proton-conducting membrane transporter YS110_RS08250 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus YS110_RS08255 PF00361 Proton-conducting membrane transporter YS110_RS08255 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus YS110_RS08260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YS110_RS08265 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YS110_RS08270 PF12838 4Fe-4S dicluster domain YS110_RS08275 PF00146 NADH dehydrogenase YS110_RS08280 PF00384 Molybdopterin oxidoreductase YS110_RS08280 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal YS110_RS08280 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YS110_RS08285 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region YS110_RS08285 PF10531 SLBB domain YS110_RS08285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit YS110_RS08295 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit YS110_RS08300 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit YS110_RS08305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit YS110_RS08310 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YS110_RS08320 PF03840 Preprotein translocase SecG subunit YS110_RS08325 PF00121 Triosephosphate isomerase YS110_RS08330 PF00107 Zinc-binding dehydrogenase YS110_RS08330 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS08335 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain YS110_RS08335 PF03725 3' exoribonuclease family, domain 2 YS110_RS08335 PF00575 S1 RNA binding domain YS110_RS08335 PF00013 KH domain YS110_RS08335 PF01138 3' exoribonuclease family, domain 1 YS110_RS08340 PF00312 Ribosomal protein S15 YS110_RS08345 PF01458 Uncharacterized protein family (UPF0051) YS110_RS08350 PF00005 ABC transporter YS110_RS08360 PF00266 Aminotransferase class-V YS110_RS08365 PF01592 NifU-like N terminal domain YS110_RS08370 PF01883 Iron-sulfur cluster assembly protein YS110_RS08390 PF00114 Pilin (bacterial filament) YS110_RS08390 PF07963 Prokaryotic N-terminal methylation motif YS110_RS08395 PF00114 Pilin (bacterial filament) YS110_RS08395 PF07963 Prokaryotic N-terminal methylation motif YS110_RS08415 PF05567 Neisseria PilC beta-propeller domain YS110_RS08420 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor YS110_RS08420 PF07963 Prokaryotic N-terminal methylation motif YS110_RS08425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region YS110_RS08425 PF01872 RibD C-terminal domain YS110_RS08430 PF00581 Rhodanese-like domain YS110_RS08435 PF01207 Dihydrouridine synthase (Dus) YS110_RS08455 PF00072 Response regulator receiver domain YS110_RS08455 PF00196 Bacterial regulatory proteins, luxR family YS110_RS08460 PF00072 Response regulator receiver domain YS110_RS08460 PF01627 Hpt domain YS110_RS08460 PF00672 HAMP domain YS110_RS08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS08460 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS08465 PF00171 Aldehyde dehydrogenase family YS110_RS08480 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS08480 PF07724 AAA domain (Cdc48 subfamily) YS110_RS08480 PF17871 AAA lid domain YS110_RS08480 PF02861 Clp amino terminal domain, pathogenicity island component YS110_RS08480 PF10431 C-terminal, D2-small domain, of ClpB protein YS110_RS08485 PF02391 MoaE protein YS110_RS08510 PF00994 Probable molybdopterin binding domain YS110_RS08510 PF03453 MoeA N-terminal region (domain I and II) YS110_RS08510 PF03454 MoeA C-terminal region (domain IV) YS110_RS08515 PF03205 Molybdopterin guanine dinucleotide synthesis protein B YS110_RS08520 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS08520 PF14821 Threonine synthase N terminus YS110_RS08525 PF01842 ACT domain YS110_RS08525 PF03447 Homoserine dehydrogenase, NAD binding domain YS110_RS08525 PF00742 Homoserine dehydrogenase YS110_RS08530 PF00155 Aminotransferase class I and II YS110_RS08540 PF00578 AhpC/TSA family YS110_RS08545 PF13638 PIN domain YS110_RS08545 PF02562 PhoH-like protein YS110_RS08550 PF00392 Bacterial regulatory proteins, gntR family YS110_RS08550 PF07840 FadR C-terminal domain YS110_RS08570 PF00294 pfkB family carbohydrate kinase YS110_RS08575 PF01026 TatD related DNase YS110_RS08580 PF00005 ABC transporter YS110_RS08585 PF12704 MacB-like periplasmic core domain YS110_RS08585 PF02687 FtsX-like permease family YS110_RS08595 PF17768 RecJ OB domain YS110_RS08595 PF02272 DHHA1 domain YS110_RS08595 PF01368 DHH family YS110_RS08600 PF03350 Uncharacterized protein family, UPF0114 YS110_RS08605 PF02203 Tar ligand binding domain homologue YS110_RS08605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS08605 PF00672 HAMP domain YS110_RS08610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS08610 PF00672 HAMP domain YS110_RS08610 PF02203 Tar ligand binding domain homologue YS110_RS08615 PF02811 PHP domain YS110_RS08620 PF01300 Telomere recombination YS110_RS08625 PF02163 Peptidase family M50 YS110_RS08630 PF00579 tRNA synthetases class I (W and Y) YS110_RS08635 PF00486 Transcriptional regulatory protein, C terminal YS110_RS08635 PF00072 Response regulator receiver domain YS110_RS08645 PF11808 Phosphate regulon sensor protein PhoR YS110_RS08645 PF00989 PAS fold YS110_RS08645 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS08645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS08665 PF13847 Methyltransferase domain YS110_RS08730 PF03942 DTW domain YS110_RS08740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YS110_RS08740 PF02403 Seryl-tRNA synthetase N-terminal domain YS110_RS08750 PF00072 Response regulator receiver domain YS110_RS08750 PF00672 HAMP domain YS110_RS08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS08750 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS08750 PF01627 Hpt domain YS110_RS08750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YS110_RS08755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS08755 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_RS08755 PF00072 Response regulator receiver domain YS110_RS08755 PF00989 PAS fold YS110_RS08755 PF01627 Hpt domain YS110_RS08755 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS08765 PF11849 Domain of unknown function (DUF3369) YS110_RS08770 PF00072 Response regulator receiver domain YS110_RS08770 PF00486 Transcriptional regulatory protein, C terminal YS110_RS08780 PF00072 Response regulator receiver domain YS110_RS08780 PF00486 Transcriptional regulatory protein, C terminal YS110_RS08790 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS08790 PF00072 Response regulator receiver domain YS110_RS08805 PF02401 LytB protein YS110_RS08810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_RS08815 PF04002 RadC-like JAB domain YS110_RS08820 PF13416 Bacterial extracellular solute-binding protein YS110_RS08825 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS08835 PF00486 Transcriptional regulatory protein, C terminal YS110_RS08835 PF00072 Response regulator receiver domain YS110_RS08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS08840 PF00672 HAMP domain YS110_RS08840 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS08850 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system YS110_RS08855 PF00593 TonB dependent receptor YS110_RS08855 PF07715 TonB-dependent Receptor Plug Domain YS110_RS08870 PF16220 Domain of unknown function (DUF4880) YS110_RS08870 PF04773 FecR protein YS110_RS08875 PF07660 Secretin and TonB N terminus short domain YS110_RS08875 PF00593 TonB dependent receptor YS110_RS08875 PF07715 TonB-dependent Receptor Plug Domain YS110_RS08880 PF01850 PIN domain YS110_RS08885 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin YS110_RS08895 PF01850 PIN domain YS110_RS08905 PF01713 Smr domain YS110_RS08905 PF00488 MutS domain V YS110_RS08910 PF01047 MarR family YS110_RS08915 PF02371 Transposase IS116/IS110/IS902 family YS110_RS08915 PF01548 Transposase YS110_RS08930 PF00149 Calcineurin-like phosphoesterase YS110_RS08930 PF02872 5'-nucleotidase, C-terminal domain YS110_RS08935 PF00892 EamA-like transporter family YS110_RS08940 PF01435 Peptidase family M48 YS110_RS08945 PF04011 LemA family YS110_RS08965 PF02634 FdhD/NarQ family YS110_RS08975 PF09163 Formate dehydrogenase N, transmembrane YS110_RS08975 PF13247 4Fe-4S dicluster domain YS110_RS08980 PF01292 Prokaryotic cytochrome b561 YS110_RS08985 PF04216 Protein involved in formate dehydrogenase formation YS110_RS08990 PF03841 L-seryl-tRNA selenium transferase YS110_RS08990 PF12390 Selenocysteine synthase N terminal YS110_RS09015 PF07715 TonB-dependent Receptor Plug Domain YS110_RS09015 PF00593 TonB dependent receptor YS110_RS09025 PF09107 Elongation factor SelB, winged helix YS110_RS09025 PF09106 Elongation factor SelB, winged helix YS110_RS09025 PF03144 Elongation factor Tu domain 2 YS110_RS09025 PF00009 Elongation factor Tu GTP binding domain YS110_RS09075 PF00501 AMP-binding enzyme YS110_RS09075 PF13193 AMP-binding enzyme C-terminal domain YS110_RS09080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS09080 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS09080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS09105 PF02769 AIR synthase related protein, C-terminal domain YS110_RS09105 PF00586 AIR synthase related protein, N-terminal domain YS110_RS09110 PF10609 NUBPL iron-transfer P-loop NTPase YS110_RS09120 PF00593 TonB dependent receptor YS110_RS09120 PF07715 TonB-dependent Receptor Plug Domain YS110_RS09130 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS09130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS09130 PF00672 HAMP domain YS110_RS09130 PF01627 Hpt domain YS110_RS09130 PF00072 Response regulator receiver domain YS110_RS09130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) YS110_RS09135 PF01590 GAF domain YS110_RS09135 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS09135 PF00360 Phytochrome region YS110_RS09135 PF00563 EAL domain YS110_RS09140 PF01588 Putative tRNA binding domain YS110_RS09140 PF09334 tRNA synthetases class I (M) YS110_RS09150 PF01810 LysE type translocator YS110_RS09165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain YS110_RS09165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain YS110_RS09170 PF02535 ZIP Zinc transporter YS110_RS09180 PF13472 GDSL-like Lipase/Acylhydrolase family YS110_RS09200 PF16916 Dimerisation domain of Zinc Transporter YS110_RS09200 PF01545 Cation efflux family YS110_RS09205 PF02583 Metal-sensitive transcriptional repressor YS110_RS09220 PF00155 Aminotransferase class I and II YS110_RS09220 PF00392 Bacterial regulatory proteins, gntR family YS110_RS09225 PF03594 Benzoate membrane transport protein YS110_RS09230 PF01168 Alanine racemase, N-terminal domain YS110_RS09235 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain YS110_RS09235 PF00117 Glutamine amidotransferase class-I YS110_RS09240 PF08543 Phosphomethylpyrimidine kinase YS110_RS09255 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YS110_RS09260 PF12146 Serine aminopeptidase, S33 YS110_RS09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS09265 PF03466 LysR substrate binding domain YS110_RS09275 PF10518 TAT (twin-arginine translocation) pathway signal sequence YS110_RS09275 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS09275 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding YS110_RS09310 PF13458 Periplasmic binding protein YS110_RS09315 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YS110_RS09320 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component YS110_RS09325 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_RS09330 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_RS09335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS09335 PF00989 PAS fold YS110_RS09335 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS09340 PF00072 Response regulator receiver domain YS110_RS09340 PF00196 Bacterial regulatory proteins, luxR family YS110_RS09355 PF07690 Major Facilitator Superfamily YS110_RS09365 PF03466 LysR substrate binding domain YS110_RS09365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS09375 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term YS110_RS09375 PF12833 Helix-turn-helix domain YS110_RS09380 PF00890 FAD binding domain YS110_RS09385 PF01758 Sodium Bile acid symporter family YS110_RS09390 PF01070 FMN-dependent dehydrogenase YS110_RS09395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YS110_RS09395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YS110_RS09400 PF02371 Transposase IS116/IS110/IS902 family YS110_RS09400 PF01548 Transposase YS110_RS09415 PF02616 Segregation and condensation protein ScpA YS110_RS09420 PF02910 Fumarate reductase flavoprotein C-term YS110_RS09420 PF00890 FAD binding domain YS110_RS09425 PF13609 Gram-negative porin YS110_RS09430 PF02261 Aspartate decarboxylase YS110_RS09435 PF00202 Aminotransferase class-III YS110_RS09445 PF00155 Aminotransferase class I and II YS110_RS09465 PF02954 Bacterial regulatory protein, Fis family YS110_RS09465 PF00072 Response regulator receiver domain YS110_RS09465 PF00158 Sigma-54 interaction domain YS110_RS09475 PF04715 Anthranilate synthase component I, N terminal region YS110_RS09475 PF00425 chorismate binding enzyme YS110_RS09480 PF13458 Periplasmic binding protein YS110_RS09520 PF02445 Quinolinate synthetase A protein YS110_RS09525 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain YS110_RS09525 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain YS110_RS09530 PF00005 ABC transporter YS110_RS09540 PF02548 Ketopantoate hydroxymethyltransferase YS110_RS09545 PF02569 Pantoate-beta-alanine ligase YS110_RS09550 PF00171 Aldehyde dehydrogenase family YS110_RS09570 PF04030 D-arabinono-1,4-lactone oxidase YS110_RS09570 PF01565 FAD binding domain YS110_RS09575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS09590 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YS110_RS09590 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YS110_RS09595 PF02556 Preprotein translocase subunit SecB YS110_RS09600 PF00462 Glutaredoxin YS110_RS09610 PF00300 Histidine phosphatase superfamily (branch 1) YS110_RS09615 PF13180 PDZ domain YS110_RS09615 PF03572 Peptidase family S41 YS110_RS09620 PF00899 ThiF family YS110_RS09630 PF00072 Response regulator receiver domain YS110_RS09630 PF00196 Bacterial regulatory proteins, luxR family YS110_RS09635 PF07730 Histidine kinase YS110_RS09640 PF07043 Protein of unknown function (DUF1328) YS110_RS09690 PF01467 Cytidylyltransferase-like YS110_RS09700 PF05193 Peptidase M16 inactive domain YS110_RS09705 PF00675 Insulinase (Peptidase family M16) YS110_RS09705 PF05193 Peptidase M16 inactive domain YS110_RS09710 PF02881 SRP54-type protein, helical bundle domain YS110_RS09710 PF00448 SRP54-type protein, GTPase domain YS110_RS09715 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS09715 PF03707 Bacterial signalling protein N terminal repeat YS110_RS09715 PF00563 EAL domain YS110_RS09750 PF03150 Di-haem cytochrome c peroxidase YS110_RS09760 PF00684 DnaJ central domain YS110_RS09760 PF01556 DnaJ C terminal domain YS110_RS09760 PF00226 DnaJ domain YS110_RS09765 PF04320 Protein with unknown function (DUF469) YS110_RS09770 PF00005 ABC transporter YS110_RS09775 PF01032 FecCD transport family YS110_RS09785 PF07715 TonB-dependent Receptor Plug Domain YS110_RS09785 PF00593 TonB dependent receptor YS110_RS09810 PF00005 ABC transporter YS110_RS09820 PF04545 Sigma-70, region 4 YS110_RS09820 PF00140 Sigma-70 factor, region 1.2 YS110_RS09820 PF04542 Sigma-70 region 2 YS110_RS09825 PF02630 SCO1/SenC YS110_RS09830 PF01040 UbiA prenyltransferase family YS110_RS09850 PF00510 Cytochrome c oxidase subunit III YS110_RS09860 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 YS110_RS09870 PF00115 Cytochrome C and Quinol oxidase polypeptide I YS110_RS09875 PF00116 Cytochrome C oxidase subunit II, periplasmic domain YS110_RS09875 PF02790 Cytochrome C oxidase subunit II, transmembrane domain YS110_RS09880 PF08241 Methyltransferase domain YS110_RS09885 PF00156 Phosphoribosyl transferase domain YS110_RS09890 PF00588 SpoU rRNA Methylase family YS110_RS09895 PF01575 MaoC like domain YS110_RS09900 PF01883 Iron-sulfur cluster assembly protein YS110_RS09900 PF10609 NUBPL iron-transfer P-loop NTPase YS110_RS09905 PF01810 LysE type translocator YS110_RS09910 PF00999 Sodium/hydrogen exchanger family YS110_RS09910 PF02254 TrkA-N domain YS110_RS09925 PF00034 Cytochrome c YS110_RS09930 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS09930 PF17862 AAA+ lid domain YS110_RS09930 PF01434 Peptidase family M41 YS110_RS09965 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YS110_RS09970 PF01176 Translation initiation factor 1A / IF-1 YS110_RS09980 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS09980 PF08521 Two-component sensor kinase N-terminal YS110_RS09980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS09985 PF00486 Transcriptional regulatory protein, C terminal YS110_RS09985 PF00072 Response regulator receiver domain YS110_RS10005 PF13180 PDZ domain YS110_RS10005 PF17820 PDZ domain YS110_RS10010 PF03960 ArsC family YS110_RS10015 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS10020 PF08402 TOBE domain YS110_RS10020 PF00005 ABC transporter YS110_RS10030 PF01979 Amidohydrolase family YS110_RS10035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YS110_RS10035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YS110_RS10040 PF00156 Phosphoribosyl transferase domain YS110_RS10045 PF03652 Holliday junction resolvase YS110_RS10050 PF02622 Uncharacterized ACR, COG1678 YS110_RS10055 PF09078 CheY binding YS110_RS10055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS10055 PF01584 CheW-like domain YS110_RS10055 PF02895 Signal transducing histidine kinase, homodimeric domain YS110_RS10055 PF01627 Hpt domain YS110_RS10060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS10060 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term YS110_RS10065 PF01584 CheW-like domain YS110_RS10070 PF00072 Response regulator receiver domain YS110_RS10075 PF00072 Response regulator receiver domain YS110_RS10080 PF00301 Rubredoxin YS110_RS10090 PF00202 Aminotransferase class-III YS110_RS10095 PF09423 PhoD-like phosphatase YS110_RS10095 PF16655 PhoD-like phosphatase, N-terminal domain YS110_RS10105 PF00005 ABC transporter YS110_RS10105 PF13732 Domain of unknown function (DUF4162) YS110_RS10115 PF00394 Multicopper oxidase YS110_RS10115 PF07731 Multicopper oxidase YS110_RS10115 PF07732 Multicopper oxidase YS110_RS10125 PF00593 TonB dependent receptor YS110_RS10125 PF07715 TonB-dependent Receptor Plug Domain YS110_RS10135 PF02142 MGS-like domain YS110_RS10135 PF01808 AICARFT/IMPCHase bienzyme YS110_RS10140 PF02954 Bacterial regulatory protein, Fis family YS110_RS10145 PF01207 Dihydrouridine synthase (Dus) YS110_RS10150 PF01427 D-ala-D-ala dipeptidase YS110_RS10155 PF09335 SNARE associated Golgi protein YS110_RS10160 PF01628 HrcA protein C terminal domain YS110_RS10160 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding YS110_RS10165 PF01513 ATP-NAD kinase YS110_RS10170 PF02463 RecF/RecN/SMC N terminal domain YS110_RS10175 PF03668 P-loop ATPase protein family YS110_RS10180 PF10576 Iron-sulfur binding domain of endonuclease III YS110_RS10180 PF00730 HhH-GPD superfamily base excision DNA repair protein YS110_RS10180 PF14815 NUDIX domain YS110_RS10180 PF00633 Helix-hairpin-helix motif YS110_RS10190 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain YS110_RS10190 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain YS110_RS10190 PF06827 Zinc finger found in FPG and IleRS YS110_RS10205 PF00288 GHMP kinases N terminal domain YS110_RS10205 PF08544 GHMP kinases C terminal YS110_RS10215 PF14572 Phosphoribosyl synthetase-associated domain YS110_RS10215 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase YS110_RS10220 PF14693 Ribosomal protein TL5, C-terminal domain YS110_RS10220 PF01386 Ribosomal L25p family YS110_RS10225 PF01195 Peptidyl-tRNA hydrolase YS110_RS10230 PF00037 4Fe-4S binding domain YS110_RS10235 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS10240 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS10240 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_RS10245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_RS10250 PF01810 LysE type translocator YS110_RS10265 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS10270 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS10275 PF00005 ABC transporter YS110_RS10280 PF04069 Substrate binding domain of ABC-type glycine betaine transport system YS110_RS10285 PF00072 Response regulator receiver domain YS110_RS10285 PF00196 Bacterial regulatory proteins, luxR family YS110_RS10290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS10290 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS10305 PF01227 GTP cyclohydrolase I YS110_RS10315 PF13091 PLD-like domain YS110_RS10335 PF00152 tRNA synthetases class II (D, K and N) YS110_RS10335 PF02938 GAD domain YS110_RS10335 PF01336 OB-fold nucleic acid binding domain YS110_RS10355 PF03109 ABC1 family YS110_RS10370 PF01209 ubiE/COQ5 methyltransferase family YS110_RS10405 PF00072 Response regulator receiver domain YS110_RS10405 PF00486 Transcriptional regulatory protein, C terminal YS110_RS10410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS10410 PF08521 Two-component sensor kinase N-terminal YS110_RS10410 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS10415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YS110_RS10415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YS110_RS10425 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS10430 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS10435 PF00005 ABC transporter YS110_RS10435 PF17912 MalK OB fold domain YS110_RS10440 PF03009 Glycerophosphoryl diester phosphodiesterase family YS110_RS10450 PF01488 Shikimate / quinate 5-dehydrogenase YS110_RS10450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain YS110_RS10450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain YS110_RS10455 PF00472 RF-1 domain YS110_RS10455 PF03462 PCRF domain YS110_RS10460 PF17827 PrmC N-terminal domain YS110_RS10460 PF05175 Methyltransferase small domain YS110_RS10465 PF00462 Glutaredoxin YS110_RS10470 PF00571 CBS domain YS110_RS10470 PF03471 Transporter associated domain YS110_RS10470 PF01595 Cyclin M transmembrane N-terminal domain YS110_RS10475 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain YS110_RS10475 PF01464 Transglycosylase SLT domain YS110_RS10480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) YS110_RS10480 PF03129 Anticodon binding domain YS110_RS10480 PF04073 Aminoacyl-tRNA editing domain YS110_RS10485 PF00293 NUDIX domain YS110_RS10490 PF00696 Amino acid kinase family YS110_RS10490 PF01472 PUA domain YS110_RS10495 PF01018 GTP1/OBG YS110_RS10495 PF01926 50S ribosome-binding GTPase YS110_RS10500 PF01016 Ribosomal L27 protein YS110_RS10505 PF00829 Ribosomal prokaryotic L21 protein YS110_RS10510 PF00348 Polyprenyl synthetase YS110_RS10520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YS110_RS10520 PF00437 Type II/IV secretion system protein YS110_RS10525 PF00482 Type II secretion system (T2SS), protein F YS110_RS10530 PF06750 Bacterial Peptidase A24 N-terminal domain YS110_RS10530 PF01478 Type IV leader peptidase family YS110_RS10535 PF01121 Dephospho-CoA kinase YS110_RS10540 PF07072 Cell division protein YS110_RS10545 PF03884 DNA gyrase inhibitor YacG YS110_RS10550 PF00293 NUDIX domain YS110_RS10560 PF01960 ArgJ family YS110_RS10565 PF07517 SecA DEAD-like domain YS110_RS10565 PF01043 SecA preprotein cross-linking domain YS110_RS10565 PF07516 SecA Wing and Scaffold domain YS110_RS10565 PF02810 SEC-C motif YS110_RS10580 PF04386 Stringent starvation protein B YS110_RS10585 PF00043 Glutathione S-transferase, C-terminal domain YS110_RS10585 PF02798 Glutathione S-transferase, N-terminal domain YS110_RS10590 PF02167 Cytochrome C1 family YS110_RS10595 PF00032 Cytochrome b(C-terminal)/b6/petD YS110_RS10595 PF00033 Cytochrome b/b6/petB YS110_RS10600 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal YS110_RS10600 PF00355 Rieske [2Fe-2S] domain YS110_RS10605 PF01741 Large-conductance mechanosensitive channel, MscL YS110_RS10610 PF04166 Pyridoxal phosphate biosynthetic protein PdxA YS110_RS10615 PF01784 NIF3 (NGG1p interacting factor 3) YS110_RS10620 PF13180 PDZ domain YS110_RS10620 PF17820 PDZ domain YS110_RS10625 PF00902 Sec-independent protein translocase protein (TatC) YS110_RS10630 PF02416 mttA/Hcf106 family YS110_RS10635 PF02416 mttA/Hcf106 family YS110_RS10640 PF01230 HIT domain YS110_RS10655 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase YS110_RS10660 PF01502 Phosphoribosyl-AMP cyclohydrolase YS110_RS10665 PF00977 Histidine biosynthesis protein YS110_RS10670 PF16363 GDP-mannose 4,6 dehydratase YS110_RS10700 PF13439 Glycosyltransferase Family 4 YS110_RS10700 PF00534 Glycosyl transferases group 1 YS110_RS10715 PF00977 Histidine biosynthesis protein YS110_RS10720 PF00117 Glutamine amidotransferase class-I YS110_RS10725 PF00475 Imidazoleglycerol-phosphate dehydratase YS110_RS10730 PF00155 Aminotransferase class I and II YS110_RS10745 PF00144 Beta-lactamase YS110_RS10750 PF00392 Bacterial regulatory proteins, gntR family YS110_RS10750 PF00155 Aminotransferase class I and II YS110_RS10760 PF00815 Histidinol dehydrogenase YS110_RS10765 PF01634 ATP phosphoribosyltransferase YS110_RS10770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YS110_RS10780 PF01061 ABC-2 type transporter YS110_RS10785 PF00005 ABC transporter YS110_RS10800 PF04333 MlaA lipoprotein YS110_RS10805 PF02470 MlaD protein YS110_RS10810 PF02405 Permease MlaE YS110_RS10815 PF00005 ABC transporter YS110_RS10820 PF00005 ABC transporter YS110_RS10825 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS10830 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_RS10835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS10835 PF03466 LysR substrate binding domain YS110_RS10845 PF00171 Aldehyde dehydrogenase family YS110_RS10865 PF07804 HipA-like C-terminal domain YS110_RS10875 PF00589 Phage integrase family YS110_RS10875 PF02899 Phage integrase, N-terminal SAM-like domain YS110_RS10880 PF07478 D-ala D-ala ligase C-terminus YS110_RS10880 PF01820 D-ala D-ala ligase N-terminus YS110_RS10905 PF05685 Putative restriction endonuclease YS110_RS10910 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster YS110_RS10910 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS10915 PF00310 Glutamine amidotransferases class-II YS110_RS10915 PF04898 Glutamate synthase central domain YS110_RS10915 PF01645 Conserved region in glutamate synthase YS110_RS10915 PF01493 GXGXG motif YS110_RS10925 PF01794 Ferric reductase like transmembrane component YS110_RS10930 PF00174 Oxidoreductase molybdopterin binding domain YS110_RS10945 PF13286 Phosphohydrolase-associated domain YS110_RS10945 PF01966 HD domain YS110_RS10950 PF01761 3-dehydroquinate synthase YS110_RS10955 PF01202 Shikimate kinase YS110_RS10965 PF11741 AMIN domain YS110_RS10965 PF00263 Bacterial type II and III secretion system protein YS110_RS10965 PF03958 Bacterial type II/III secretion system short domain YS110_RS10965 PF07660 Secretin and TonB N terminus short domain YS110_RS10980 PF05137 Fimbrial assembly protein (PilN) YS110_RS10985 PF11104 Type IV pilus assembly protein PilM; YS110_RS10990 PF17092 Penicillin-binding protein OB-like domain YS110_RS10990 PF00912 Transglycosylase YS110_RS10990 PF00905 Penicillin binding protein transpeptidase domain YS110_RS10995 PF01491 Frataxin-like domain YS110_RS11005 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain YS110_RS11005 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain YS110_RS11015 PF01578 Cytochrome C assembly protein YS110_RS11020 PF05140 ResB-like family YS110_RS11025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS11030 PF01926 50S ribosome-binding GTPase YS110_RS11035 PF00561 alpha/beta hydrolase fold YS110_RS11040 PF03279 Bacterial lipid A biosynthesis acyltransferase YS110_RS11045 PF03279 Bacterial lipid A biosynthesis acyltransferase YS110_RS11050 PF00438 S-adenosylmethionine synthetase, N-terminal domain YS110_RS11050 PF02772 S-adenosylmethionine synthetase, central domain YS110_RS11050 PF02773 S-adenosylmethionine synthetase, C-terminal domain YS110_RS11065 PF00535 Glycosyl transferase family 2 YS110_RS11075 PF05922 Peptidase inhibitor I9 YS110_RS11075 PF00082 Subtilase family YS110_RS11075 PF04151 Bacterial pre-peptidase C-terminal domain YS110_RS11080 PF00534 Glycosyl transferases group 1 YS110_RS11090 PF16363 GDP-mannose 4,6 dehydratase YS110_RS11095 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YS110_RS11120 PF00501 AMP-binding enzyme YS110_RS11120 PF13193 AMP-binding enzyme C-terminal domain YS110_RS11135 PF00535 Glycosyl transferase family 2 YS110_RS11145 PF00534 Glycosyl transferases group 1 YS110_RS11145 PF13439 Glycosyltransferase Family 4 YS110_RS11150 PF13847 Methyltransferase domain YS110_RS11150 PF00069 Protein kinase domain YS110_RS11155 PF00005 ABC transporter YS110_RS11165 PF01061 ABC-2 type transporter YS110_RS11170 PF00483 Nucleotidyl transferase YS110_RS11170 PF01050 Mannose-6-phosphate isomerase YS110_RS11180 PF00166 Chaperonin 10 Kd subunit YS110_RS11185 PF00118 TCP-1/cpn60 chaperonin family YS110_RS11190 PF00593 TonB dependent receptor YS110_RS11190 PF07715 TonB-dependent Receptor Plug Domain YS110_RS11195 PF00342 Phosphoglucose isomerase YS110_RS11200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YS110_RS11200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YS110_RS11205 PF00923 Transaldolase/Fructose-6-phosphate aldolase YS110_RS11210 PF01380 SIS domain YS110_RS11210 PF02685 Glucokinase YS110_RS11210 PF01418 Helix-turn-helix domain, rpiR family YS110_RS11215 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_RS11215 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_RS11220 PF01336 OB-fold nucleic acid binding domain YS110_RS11220 PF00152 tRNA synthetases class II (D, K and N) YS110_RS11220 PF02938 GAD domain YS110_RS11225 PF00672 HAMP domain YS110_RS11225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS11225 PF02203 Tar ligand binding domain homologue YS110_RS11230 PF01161 Phosphatidylethanolamine-binding protein YS110_RS11235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_RS11235 PF00005 ABC transporter YS110_RS11240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_RS11240 PF00005 ABC transporter YS110_RS11245 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS11245 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_RS11250 PF07687 Peptidase dimerisation domain YS110_RS11250 PF01546 Peptidase family M20/M25/M40 YS110_RS11255 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS11265 PF13609 Gram-negative porin YS110_RS11270 PF02566 OsmC-like protein YS110_RS11275 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS11275 PF00585 C-terminal regulatory domain of Threonine dehydratase YS110_RS11280 PF02654 Cobalamin-5-phosphate synthase YS110_RS11295 PF08334 Type II secretion system (T2SS), protein G YS110_RS11295 PF07963 Prokaryotic N-terminal methylation motif YS110_RS11300 PF12019 Type II transport protein GspH YS110_RS11305 PF07963 Prokaryotic N-terminal methylation motif YS110_RS11305 PF02501 Type II secretion system (T2SS), protein I YS110_RS11310 PF11612 Type II secretion system (T2SS), protein J YS110_RS11310 PF07963 Prokaryotic N-terminal methylation motif YS110_RS11335 PF03958 Bacterial type II/III secretion system short domain YS110_RS11335 PF00263 Bacterial type II and III secretion system protein YS110_RS11340 PF00437 Type II/IV secretion system protein YS110_RS11350 PF00296 Luciferase-like monooxygenase YS110_RS11355 PF00482 Type II secretion system (T2SS), protein F YS110_RS11360 PF00909 Ammonium Transporter Family YS110_RS11375 PF00664 ABC transporter transmembrane region YS110_RS11375 PF00005 ABC transporter YS110_RS11380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS11380 PF02875 Mur ligase family, glutamate ligase domain YS110_RS11380 PF08245 Mur ligase middle domain YS110_RS11385 PF08245 Mur ligase middle domain YS110_RS11385 PF02875 Mur ligase family, glutamate ligase domain YS110_RS11385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS11390 PF05981 CreA protein YS110_RS11405 PF02321 Outer membrane efflux protein YS110_RS11410 PF00529 HlyD membrane-fusion protein of T1SS YS110_RS11410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS11415 PF07690 Major Facilitator Superfamily YS110_RS11420 PF01914 MarC family integral membrane protein YS110_RS11450 PF00005 ABC transporter YS110_RS11450 PF16326 ABC transporter C-terminal domain YS110_RS11450 PF12848 ABC transporter YS110_RS11460 PF01339 CheB methylesterase YS110_RS11460 PF00072 Response regulator receiver domain YS110_RS11465 PF03975 CheD chemotactic sensory transduction YS110_RS11470 PF01739 CheR methyltransferase, SAM binding domain YS110_RS11470 PF03705 CheR methyltransferase, all-alpha domain YS110_RS11475 PF01584 CheW-like domain YS110_RS11480 PF01584 CheW-like domain YS110_RS11480 PF09078 CheY binding YS110_RS11480 PF02895 Signal transducing histidine kinase, homodimeric domain YS110_RS11480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS11480 PF01627 Hpt domain YS110_RS11485 PF00072 Response regulator receiver domain YS110_RS11495 PF07730 Histidine kinase YS110_RS11495 PF05384 Sensor protein DegS YS110_RS11495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS11500 PF00196 Bacterial regulatory proteins, luxR family YS110_RS11500 PF00072 Response regulator receiver domain YS110_RS11505 PF01311 Bacterial export proteins, family 1 YS110_RS11510 PF01313 Bacterial export proteins, family 3 YS110_RS11515 PF00813 FliP family YS110_RS11525 PF16973 Flagellar motor switch protein FliN N-terminal YS110_RS11525 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YS110_RS11530 PF02154 Flagellar motor switch protein FliM YS110_RS11530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term YS110_RS11535 PF03748 Flagellar basal body-associated protein FliL YS110_RS11550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_RS11550 PF18269 T3SS EscN ATPase C-terminal domain YS110_RS11560 PF01706 FliG C-terminal domain YS110_RS11560 PF14841 FliG middle domain YS110_RS11560 PF14842 FliG N-terminal domain YS110_RS11565 PF01514 Secretory protein of YscJ/FliF family YS110_RS11565 PF08345 Flagellar M-ring protein C-terminal YS110_RS11570 PF02049 Flagellar hook-basal body complex protein FliE YS110_RS11580 PF02561 Flagellar protein FliS YS110_RS11585 PF02465 Flagellar hook-associated protein 2 N-terminus YS110_RS11585 PF07195 Flagellar hook-associated protein 2 C-terminus YS110_RS11585 PF07196 Flagellin hook IN motif YS110_RS11590 PF07196 Flagellin hook IN motif YS110_RS11590 PF00700 Bacterial flagellin C-terminal helical region YS110_RS11590 PF00669 Bacterial flagellin N-terminal helical region YS110_RS11595 PF00700 Bacterial flagellin C-terminal helical region YS110_RS11595 PF00669 Bacterial flagellin N-terminal helical region YS110_RS11605 PF00483 Nucleotidyl transferase YS110_RS11610 PF16363 GDP-mannose 4,6 dehydratase YS110_RS11615 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family YS110_RS11620 PF08666 SAF domain YS110_RS11620 PF03102 NeuB family YS110_RS11625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain YS110_RS11625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain YS110_RS11625 PF00205 Thiamine pyrophosphate enzyme, central domain YS110_RS11635 PF16363 GDP-mannose 4,6 dehydratase YS110_RS11640 PF13419 Haloacid dehalogenase-like hydrolase YS110_RS11645 PF00535 Glycosyl transferase family 2 YS110_RS11650 PF00535 Glycosyl transferase family 2 YS110_RS11655 PF01618 MotA/TolQ/ExbB proton channel family YS110_RS11660 PF13677 Membrane MotB of proton-channel complex MotA/MotB YS110_RS11660 PF00691 OmpA family YS110_RS11665 PF00072 Response regulator receiver domain YS110_RS11670 PF04344 Chemotaxis phosphatase, CheZ YS110_RS11675 PF01312 FlhB HrpN YscU SpaS Family YS110_RS11680 PF00771 FHIPEP family YS110_RS11685 PF00448 SRP54-type protein, GTPase domain YS110_RS11695 PF04542 Sigma-70 region 2 YS110_RS11695 PF04539 Sigma-70 region 3 YS110_RS11695 PF04545 Sigma-70, region 4 YS110_RS11715 PF00460 Flagella basal body rod protein YS110_RS11720 PF00460 Flagella basal body rod protein YS110_RS11720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_RS11725 PF03963 Flagellar hook capping protein - N-terminal region YS110_RS11725 PF13860 FlgD Ig-like domain YS110_RS11725 PF13861 FlgD Tudor-like domain YS110_RS11730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_RS11730 PF00460 Flagella basal body rod protein YS110_RS11730 PF07559 Flagellar basal body protein FlaE YS110_RS11735 PF00460 Flagella basal body rod protein YS110_RS11735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_RS11740 PF00460 Flagella basal body rod protein YS110_RS11740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal YS110_RS11745 PF02107 Flagellar L-ring protein YS110_RS11750 PF01979 Amidohydrolase family YS110_RS11765 PF01435 Peptidase family M48 YS110_RS11790 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS11795 PF01137 RNA 3'-terminal phosphate cyclase YS110_RS11795 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain YS110_RS11800 PF01139 tRNA-splicing ligase RtcB YS110_RS11820 PF06956 Regulator of RNA terminal phosphate cyclase YS110_RS11820 PF00158 Sigma-54 interaction domain YS110_RS11835 PF05987 Bacterial protein of unknown function (DUF898) YS110_RS11845 PF16123 Hydroxyacylglutathione hydrolase C-terminus YS110_RS11845 PF00753 Metallo-beta-lactamase superfamily YS110_RS11855 PF01678 Diaminopimelate epimerase YS110_RS11865 PF00005 ABC transporter YS110_RS11870 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS11875 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS11880 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_RS11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS11890 PF03466 LysR substrate binding domain YS110_RS11900 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component YS110_RS11900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component YS110_RS11905 PF03480 Bacterial extracellular solute-binding protein, family 7 YS110_RS11910 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS11910 PF05230 MASE2 domain YS110_RS11915 PF00664 ABC transporter transmembrane region YS110_RS11915 PF00005 ABC transporter YS110_RS11920 PF03061 Thioesterase superfamily YS110_RS11930 PF03061 Thioesterase superfamily YS110_RS11935 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS11945 PF02803 Thiolase, C-terminal domain YS110_RS11945 PF00108 Thiolase, N-terminal domain YS110_RS11950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_RS11950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_RS11950 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS11960 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS11960 PF12806 Acetyl-CoA dehydrogenase C-terminal like YS110_RS11960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS11960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS11975 PF00664 ABC transporter transmembrane region YS110_RS11975 PF00005 ABC transporter YS110_RS11980 PF00440 Bacterial regulatory proteins, tetR family YS110_RS11990 PF16198 tRNA pseudouridylate synthase B C-terminal domain YS110_RS11990 PF01509 TruB family pseudouridylate synthase (N terminal domain) YS110_RS12005 PF01553 Acyltransferase YS110_RS12005 PF00501 AMP-binding enzyme YS110_RS12030 PF00085 Thioredoxin YS110_RS12035 PF01743 Poly A polymerase head domain YS110_RS12035 PF01966 HD domain YS110_RS12035 PF12627 Probable RNA and SrmB- binding site of polymerase A YS110_RS12040 PF17284 Spermidine synthase tetramerisation domain YS110_RS12065 PF00005 ABC transporter YS110_RS12080 PF01196 Ribosomal protein L17 YS110_RS12085 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain YS110_RS12085 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain YS110_RS12085 PF01000 RNA polymerase Rpb3/RpoA insert domain YS110_RS12090 PF00163 Ribosomal protein S4/S9 N-terminal domain YS110_RS12090 PF01479 S4 domain YS110_RS12095 PF00411 Ribosomal protein S11 YS110_RS12100 PF00416 Ribosomal protein S13/S18 YS110_RS12105 PF00444 Ribosomal protein L36 YS110_RS12110 PF00344 SecY translocase YS110_RS12115 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A YS110_RS12120 PF00327 Ribosomal protein L30p/L7e YS110_RS12125 PF00333 Ribosomal protein S5, N-terminal domain YS110_RS12125 PF03719 Ribosomal protein S5, C-terminal domain YS110_RS12130 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast YS110_RS12135 PF00347 Ribosomal protein L6 YS110_RS12140 PF00410 Ribosomal protein S8 YS110_RS12145 PF00253 Ribosomal protein S14p/S29e YS110_RS12150 PF00281 Ribosomal protein L5 YS110_RS12150 PF00673 ribosomal L5P family C-terminus YS110_RS12155 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 YS110_RS12160 PF00238 Ribosomal protein L14p/L23e YS110_RS12165 PF01266 FAD dependent oxidoreductase YS110_RS12165 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YS110_RS12180 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS12185 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS12190 PF00005 ABC transporter YS110_RS12190 PF17912 MalK OB fold domain YS110_RS12195 PF00005 ABC transporter YS110_RS12195 PF08402 TOBE domain YS110_RS12200 PF00455 DeoR C terminal sensor domain YS110_RS12200 PF08220 DeoR-like helix-turn-helix domain YS110_RS12205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YS110_RS12205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YS110_RS12210 PF14748 Pyrroline-5-carboxylate reductase dimerisation YS110_RS12210 PF03807 NADP oxidoreductase coenzyme F420-dependent YS110_RS12215 PF01040 UbiA prenyltransferase family YS110_RS12220 PF00210 Ferritin-like domain YS110_RS12225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS12225 PF03466 LysR substrate binding domain YS110_RS12230 PF00270 DEAD/DEAH box helicase YS110_RS12230 PF00271 Helicase conserved C-terminal domain YS110_RS12230 PF17191 RecG wedge domain YS110_RS12255 PF11806 Domain of unknown function (DUF3327) YS110_RS12255 PF00756 Putative esterase YS110_RS12260 PF12792 CSS motif domain associated with EAL YS110_RS12260 PF00563 EAL domain YS110_RS12265 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS12265 PF01590 GAF domain YS110_RS12265 PF00563 EAL domain YS110_RS12265 PF00360 Phytochrome region YS110_RS12270 PF00069 Protein kinase domain YS110_RS12270 PF03793 PASTA domain YS110_RS12275 PF01226 Formate/nitrite transporter YS110_RS12280 PF03861 ANTAR domain YS110_RS12280 PF08376 Nitrate and nitrite sensing YS110_RS12290 PF04324 BFD-like [2Fe-2S] binding domain YS110_RS12290 PF01077 Nitrite and sulphite reductase 4Fe-4S domain YS110_RS12290 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain YS110_RS12290 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS12290 PF18267 Rubredoxin NAD+ reductase C-terminal domain YS110_RS12295 PF02547 Queuosine biosynthesis protein YS110_RS12310 PF00012 Hsp70 protein YS110_RS12320 PF00012 Hsp70 protein YS110_RS12325 PF03167 Uracil DNA glycosylase superfamily YS110_RS12330 PF03707 Bacterial signalling protein N terminal repeat YS110_RS12330 PF00563 EAL domain YS110_RS12330 PF13188 PAS domain YS110_RS12330 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS12335 PF00218 Indole-3-glycerol phosphate synthase YS110_RS12345 PF02885 Glycosyl transferase family, helical bundle domain YS110_RS12345 PF00591 Glycosyl transferase family, a/b domain YS110_RS12350 PF00871 Acetokinase family YS110_RS12355 PF01515 Phosphate acetyl/butaryl transferase YS110_RS12370 PF00561 alpha/beta hydrolase fold YS110_RS12370 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus YS110_RS12375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS12375 PF00672 HAMP domain YS110_RS12375 PF02203 Tar ligand binding domain homologue YS110_RS12380 PF13607 Succinyl-CoA ligase like flavodoxin domain YS110_RS12380 PF13380 CoA binding domain YS110_RS12380 PF00583 Acetyltransferase (GNAT) family YS110_RS12385 PF00005 ABC transporter YS110_RS12390 PF01061 ABC-2 type transporter YS110_RS12395 PF00732 GMC oxidoreductase YS110_RS12395 PF05199 GMC oxidoreductase YS110_RS12400 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YS110_RS12400 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YS110_RS12405 PF01047 MarR family YS110_RS12410 PF02566 OsmC-like protein YS110_RS12420 PF00069 Protein kinase domain YS110_RS12420 PF03793 PASTA domain YS110_RS12430 PF00072 Response regulator receiver domain YS110_RS12430 PF00486 Transcriptional regulatory protein, C terminal YS110_RS12435 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS12435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS12450 PF01636 Phosphotransferase enzyme family YS110_RS12490 PF03150 Di-haem cytochrome c peroxidase YS110_RS12490 PF00034 Cytochrome c YS110_RS12520 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS12520 PF03707 Bacterial signalling protein N terminal repeat YS110_RS12520 PF00563 EAL domain YS110_RS12525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS12525 PF00529 HlyD membrane-fusion protein of T1SS YS110_RS12530 PF00873 AcrB/AcrD/AcrF family YS110_RS12535 PF02321 Outer membrane efflux protein YS110_RS12540 PF00682 HMGL-like YS110_RS12550 PF00289 Biotin carboxylase, N-terminal domain YS110_RS12550 PF00364 Biotin-requiring enzyme YS110_RS12550 PF02785 Biotin carboxylase C-terminal domain YS110_RS12550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS12565 PF05163 DinB family YS110_RS12570 PF01039 Carboxyl transferase domain YS110_RS12575 PF13193 AMP-binding enzyme C-terminal domain YS110_RS12575 PF00501 AMP-binding enzyme YS110_RS12590 PF13419 Haloacid dehalogenase-like hydrolase YS110_RS12595 PF00563 EAL domain YS110_RS12595 PF00360 Phytochrome region YS110_RS12595 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS12595 PF01590 GAF domain YS110_RS12600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_RS12615 PF03976 Polyphosphate kinase 2 (PPK2) YS110_RS12630 PF00083 Sugar (and other) transporter YS110_RS12635 PF07836 DmpG-like communication domain YS110_RS12635 PF00682 HMGL-like YS110_RS12640 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation YS110_RS12640 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_RS12705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS12705 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS12705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS12710 PF01740 STAS domain YS110_RS12720 PF13581 Histidine kinase-like ATPase domain YS110_RS12725 PF00484 Carbonic anhydrase YS110_RS12755 PF07228 Stage II sporulation protein E (SpoIIE) YS110_RS12755 PF00672 HAMP domain YS110_RS12770 PF01168 Alanine racemase, N-terminal domain YS110_RS12770 PF00842 Alanine racemase, C-terminal domain YS110_RS12790 PF02803 Thiolase, C-terminal domain YS110_RS12790 PF00108 Thiolase, N-terminal domain YS110_RS12795 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) YS110_RS12800 PF00484 Carbonic anhydrase YS110_RS12805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS12805 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS12805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS12815 PF13411 MerR HTH family regulatory protein YS110_RS12825 PF00672 HAMP domain YS110_RS12825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS12830 PF00106 short chain dehydrogenase YS110_RS12840 PF13193 AMP-binding enzyme C-terminal domain YS110_RS12840 PF00501 AMP-binding enzyme YS110_RS12845 PF02803 Thiolase, C-terminal domain YS110_RS12845 PF00108 Thiolase, N-terminal domain YS110_RS12850 PF03435 Saccharopine dehydrogenase NADP binding domain YS110_RS12855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS12855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS12855 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS12860 PF13191 AAA ATPase domain YS110_RS12860 PF00069 Protein kinase domain YS110_RS12890 PF02951 Prokaryotic glutathione synthetase, N-terminal domain YS110_RS12890 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain YS110_RS12895 PF03594 Benzoate membrane transport protein YS110_RS12900 PF04452 RNA methyltransferase YS110_RS12905 PF01636 Phosphotransferase enzyme family YS110_RS12910 PF04453 LPS transport system D YS110_RS12915 PF00639 PPIC-type PPIASE domain YS110_RS12915 PF09312 SurA N-terminal domain YS110_RS12920 PF00398 Ribosomal RNA adenine dimethylase YS110_RS12930 PF00545 ribonuclease YS110_RS12935 PF01515 Phosphate acetyl/butaryl transferase YS110_RS12935 PF03949 Malic enzyme, NAD binding domain YS110_RS12935 PF00390 Malic enzyme, N-terminal domain YS110_RS12940 PF05230 MASE2 domain YS110_RS12940 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS12945 PF00171 Aldehyde dehydrogenase family YS110_RS12950 PF00202 Aminotransferase class-III YS110_RS12960 PF07715 TonB-dependent Receptor Plug Domain YS110_RS12960 PF00593 TonB dependent receptor YS110_RS12980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS12980 PF03466 LysR substrate binding domain YS110_RS12985 PF00501 AMP-binding enzyme YS110_RS12985 PF13193 AMP-binding enzyme C-terminal domain YS110_RS12995 PF03595 Voltage-dependent anion channel YS110_RS13000 PF01047 MarR family YS110_RS13010 PF00171 Aldehyde dehydrogenase family YS110_RS13015 PF00593 TonB dependent receptor YS110_RS13015 PF07715 TonB-dependent Receptor Plug Domain YS110_RS13030 PF01590 GAF domain YS110_RS13030 PF02954 Bacterial regulatory protein, Fis family YS110_RS13030 PF00158 Sigma-54 interaction domain YS110_RS13050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS13055 PF01011 PQQ enzyme repeat YS110_RS13055 PF13360 PQQ-like domain YS110_RS13080 PF10518 TAT (twin-arginine translocation) pathway signal sequence YS110_RS13080 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS13080 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding YS110_RS13100 PF01627 Hpt domain YS110_RS13100 PF00072 Response regulator receiver domain YS110_RS13100 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS13100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS13105 PF00072 Response regulator receiver domain YS110_RS13110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS13110 PF00672 HAMP domain YS110_RS13110 PF12729 Four helix bundle sensory module for signal transduction YS110_RS13125 PF00133 tRNA synthetases class I (I, L, M and V) YS110_RS13125 PF13603 Leucyl-tRNA synthetase, Domain 2 YS110_RS13125 PF09334 tRNA synthetases class I (M) YS110_RS13125 PF08264 Anticodon-binding domain of tRNA YS110_RS13130 PF00924 Mechanosensitive ion channel YS110_RS13140 PF00563 EAL domain YS110_RS13140 PF13426 PAS domain YS110_RS13140 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS13145 PF00672 HAMP domain YS110_RS13145 PF02203 Tar ligand binding domain homologue YS110_RS13145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS13150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS13150 PF08447 PAS fold YS110_RS13155 PF02472 Biopolymer transport protein ExbD/TolR YS110_RS13160 PF01618 MotA/TolQ/ExbB proton channel family YS110_RS13165 PF01113 Dihydrodipicolinate reductase, N-terminus YS110_RS13165 PF05173 Dihydrodipicolinate reductase, C-terminus YS110_RS13170 PF04355 SmpA / OmlA family YS110_RS13175 PF01475 Ferric uptake regulator family YS110_RS13180 PF02603 HPr Serine kinase N terminus YS110_RS13180 PF07475 HPr Serine kinase C-terminal domain YS110_RS13185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YS110_RS13190 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein YS110_RS13195 PF01259 SAICAR synthetase YS110_RS13200 PF09619 Type III secretion system lipoprotein chaperone (YscW) YS110_RS13205 PF00085 Thioredoxin YS110_RS13210 PF00731 AIR carboxylase YS110_RS13215 PF02222 ATP-grasp domain YS110_RS13215 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain YS110_RS13220 PF03481 Putative GTP-binding controlling metal-binding YS110_RS13220 PF01300 Telomere recombination YS110_RS13230 PF03922 OmpW family YS110_RS13240 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family YS110_RS13245 PF00814 Glycoprotease family YS110_RS13250 PF00583 Acetyltransferase (GNAT) family YS110_RS13260 PF01544 CorA-like Mg2+ transporter protein YS110_RS13270 PF00664 ABC transporter transmembrane region YS110_RS13270 PF00005 ABC transporter YS110_RS13280 PF00535 Glycosyl transferase family 2 YS110_RS13280 PF01501 Glycosyl transferase family 8 YS110_RS13285 PF00535 Glycosyl transferase family 2 YS110_RS13290 PF00535 Glycosyl transferase family 2 YS110_RS13340 PF01048 Phosphorylase superfamily YS110_RS13345 PF13193 AMP-binding enzyme C-terminal domain YS110_RS13345 PF00501 AMP-binding enzyme YS110_RS13355 PF01116 Fructose-bisphosphate aldolase class-II YS110_RS13360 PF00224 Pyruvate kinase, barrel domain YS110_RS13360 PF02887 Pyruvate kinase, alpha/beta domain YS110_RS13365 PF00472 RF-1 domain YS110_RS13375 PF05195 Aminopeptidase P, N-terminal domain YS110_RS13375 PF00557 Metallopeptidase family M24 YS110_RS13380 PF00483 Nucleotidyl transferase YS110_RS13385 PF00196 Bacterial regulatory proteins, luxR family YS110_RS13385 PF00072 Response regulator receiver domain YS110_RS13390 PF08448 PAS fold YS110_RS13390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS13390 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS13390 PF00072 Response regulator receiver domain YS110_RS13390 PF13426 PAS domain YS110_RS13395 PF02308 MgtC family YS110_RS13400 PF00689 Cation transporting ATPase, C-terminus YS110_RS13400 PF00690 Cation transporter/ATPase, N-terminus YS110_RS13410 PF00873 AcrB/AcrD/AcrF family YS110_RS13415 PF00529 HlyD membrane-fusion protein of T1SS YS110_RS13415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS13425 PF00072 Response regulator receiver domain YS110_RS13425 PF00486 Transcriptional regulatory protein, C terminal YS110_RS13430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS13430 PF02702 Osmosensitive K+ channel His kinase sensor domain YS110_RS13430 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS13430 PF13492 GAF domain YS110_RS13430 PF13493 Domain of unknown function (DUF4118) YS110_RS13435 PF02669 K+-transporting ATPase, c chain YS110_RS13445 PF03814 Potassium-transporting ATPase A subunit YS110_RS13455 PF00456 Transketolase, thiamine diphosphate binding domain YS110_RS13455 PF02780 Transketolase, C-terminal domain YS110_RS13455 PF02779 Transketolase, pyrimidine binding domain YS110_RS13460 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain YS110_RS13460 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain YS110_RS13470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_RS13475 PF05726 Pirin C-terminal cupin domain YS110_RS13475 PF02678 Pirin YS110_RS13480 PF07715 TonB-dependent Receptor Plug Domain YS110_RS13480 PF00593 TonB dependent receptor YS110_RS13485 PF04773 FecR protein YS110_RS13485 PF16220 Domain of unknown function (DUF4880) YS110_RS13500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS13500 PF02203 Tar ligand binding domain homologue YS110_RS13500 PF00672 HAMP domain YS110_RS13510 PF02798 Glutathione S-transferase, N-terminal domain YS110_RS13525 PF03707 Bacterial signalling protein N terminal repeat YS110_RS13525 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS13525 PF00563 EAL domain YS110_RS13530 PF02203 Tar ligand binding domain homologue YS110_RS13530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS13530 PF00672 HAMP domain YS110_RS13540 PF13350 Tyrosine phosphatase family YS110_RS13550 PF01161 Phosphatidylethanolamine-binding protein YS110_RS13560 PF01131 DNA topoisomerase YS110_RS13560 PF01751 Toprim domain YS110_RS13570 PF03099 Biotin/lipoate A/B protein ligase family YS110_RS13570 PF02237 Biotin protein ligase C terminal domain YS110_RS13590 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS13590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS13590 PF08521 Two-component sensor kinase N-terminal YS110_RS13595 PF00072 Response regulator receiver domain YS110_RS13595 PF00486 Transcriptional regulatory protein, C terminal YS110_RS13605 PF00154 recA bacterial DNA recombination protein YS110_RS13610 PF02631 RecX family YS110_RS13620 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_RS13625 PF00549 CoA-ligase YS110_RS13625 PF08442 ATP-grasp domain YS110_RS13630 PF00549 CoA-ligase YS110_RS13630 PF02629 CoA binding domain YS110_RS13640 PF16697 Inner membrane component of T3SS, cytoplasmic domain YS110_RS13675 PF00535 Glycosyl transferase family 2 YS110_RS13690 PF00534 Glycosyl transferases group 1 YS110_RS13690 PF13439 Glycosyltransferase Family 4 YS110_RS13700 PF13439 Glycosyltransferase Family 4 YS110_RS13700 PF00534 Glycosyl transferases group 1 YS110_RS13720 PF01757 Acyltransferase family YS110_RS13725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain YS110_RS13725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain YS110_RS13725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain YS110_RS13735 PF01967 MoaC family YS110_RS13740 PF13181 Tetratricopeptide repeat YS110_RS13740 PF01435 Peptidase family M48 YS110_RS13745 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV YS110_RS13755 PF03741 Integral membrane protein TerC family YS110_RS13760 PF03741 Integral membrane protein TerC family YS110_RS13770 PF07152 YaeQ protein YS110_RS13775 PF00206 Lyase YS110_RS13775 PF08328 Adenylosuccinate lyase C-terminal YS110_RS13780 PF00043 Glutathione S-transferase, C-terminal domain YS110_RS13780 PF13417 Glutathione S-transferase, N-terminal domain YS110_RS13785 PF01966 HD domain YS110_RS13785 PF11871 Domain of unknown function (DUF3391) YS110_RS13790 PF00873 AcrB/AcrD/AcrF family YS110_RS13800 PF02321 Outer membrane efflux protein YS110_RS13810 PF03710 Glutamate-ammonia ligase adenylyltransferase YS110_RS13810 PF08335 GlnD PII-uridylyltransferase YS110_RS13820 PF00795 Carbon-nitrogen hydrolase YS110_RS13825 PF00989 PAS fold YS110_RS13825 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS13825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS13830 PF00196 Bacterial regulatory proteins, luxR family YS110_RS13830 PF00072 Response regulator receiver domain YS110_RS13835 PF04972 BON domain YS110_RS13835 PF00691 OmpA family YS110_RS13855 PF01037 Lrp/AsnC ligand binding domain YS110_RS13865 PF02699 Preprotein translocase subunit YS110_RS13870 PF07549 SecD/SecF GG Motif YS110_RS13870 PF13721 SecD export protein N-terminal TM region YS110_RS13870 PF02355 Protein export membrane protein YS110_RS13875 PF07549 SecD/SecF GG Motif YS110_RS13875 PF02355 Protein export membrane protein YS110_RS13885 PF17782 DprA winged helix domain YS110_RS13885 PF02481 DNA recombination-mediator protein A YS110_RS13890 PF01476 LysM domain YS110_RS13895 PF01327 Polypeptide deformylase YS110_RS13900 PF02911 Formyl transferase, C-terminal domain YS110_RS13900 PF00551 Formyl transferase YS110_RS13915 PF00162 Phosphoglycerate kinase YS110_RS13930 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family YS110_RS13935 PF01266 FAD dependent oxidoreductase YS110_RS13940 PF02203 Tar ligand binding domain homologue YS110_RS13940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS13940 PF00672 HAMP domain YS110_RS13945 PF00563 EAL domain YS110_RS13945 PF03707 Bacterial signalling protein N terminal repeat YS110_RS13945 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS13950 PF17760 UvrA interaction domain YS110_RS13950 PF17755 UvrA DNA-binding domain YS110_RS13955 PF00583 Acetyltransferase (GNAT) family YS110_RS13985 PF07690 Major Facilitator Superfamily YS110_RS13990 PF00436 Single-strand binding protein family YS110_RS14015 PF00106 short chain dehydrogenase YS110_RS14020 PF01565 FAD binding domain YS110_RS14020 PF04030 D-arabinono-1,4-lactone oxidase YS110_RS14030 PF01040 UbiA prenyltransferase family YS110_RS14045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS14045 PF08521 Two-component sensor kinase N-terminal YS110_RS14045 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS14050 PF00072 Response regulator receiver domain YS110_RS14050 PF00486 Transcriptional regulatory protein, C terminal YS110_RS14055 PF18081 Fanconi anemia-associated nuclease SAP domain YS110_RS14055 PF08774 VRR-NUC domain YS110_RS14060 PF00034 Cytochrome c YS110_RS14060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS14065 PF01568 Molydopterin dinucleotide binding domain YS110_RS14065 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YS110_RS14065 PF00384 Molybdopterin oxidoreductase YS110_RS14070 PF03916 Polysulphide reductase, NrfD YS110_RS14075 PF13247 4Fe-4S dicluster domain YS110_RS14080 PF02913 FAD linked oxidases, C-terminal domain YS110_RS14080 PF01565 FAD binding domain YS110_RS14090 PF01923 Cobalamin adenosyltransferase YS110_RS14095 PF03061 Thioesterase superfamily YS110_RS14105 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain YS110_RS14105 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain YS110_RS14110 PF00860 Permease family YS110_RS14125 PF00440 Bacterial regulatory proteins, tetR family YS110_RS14130 PF12706 Beta-lactamase superfamily domain YS110_RS14135 PF01494 FAD binding domain YS110_RS14140 PF01435 Peptidase family M48 YS110_RS14145 PF01548 Transposase YS110_RS14145 PF02371 Transposase IS116/IS110/IS902 family YS110_RS14150 PF00501 AMP-binding enzyme YS110_RS14150 PF13193 AMP-binding enzyme C-terminal domain YS110_RS14155 PF01066 CDP-alcohol phosphatidyltransferase YS110_RS14160 PF00593 TonB dependent receptor YS110_RS14160 PF07715 TonB-dependent Receptor Plug Domain YS110_RS14180 PF03775 Septum formation inhibitor MinC, C-terminal domain YS110_RS14180 PF05209 Septum formation inhibitor MinC, N-terminal domain YS110_RS14185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain YS110_RS14190 PF03776 Septum formation topological specificity factor MinE YS110_RS14205 PF01613 Flavin reductase like domain YS110_RS14235 PF13533 Biotin-lipoyl like YS110_RS14240 PF00005 ABC transporter YS110_RS14265 PF00708 Acylphosphatase YS110_RS14285 PF00072 Response regulator receiver domain YS110_RS14285 PF00563 EAL domain YS110_RS14285 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS14290 PF00072 Response regulator receiver domain YS110_RS14290 PF00486 Transcriptional regulatory protein, C terminal YS110_RS14295 PF01584 CheW-like domain YS110_RS14295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS14295 PF01627 Hpt domain YS110_RS14295 PF00072 Response regulator receiver domain YS110_RS14300 PF01739 CheR methyltransferase, SAM binding domain YS110_RS14300 PF03705 CheR methyltransferase, all-alpha domain YS110_RS14305 PF01339 CheB methylesterase YS110_RS14305 PF00072 Response regulator receiver domain YS110_RS14310 PF02743 Cache domain YS110_RS14310 PF00672 HAMP domain YS110_RS14310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS14320 PF06733 DEAD_2 YS110_RS14320 PF13307 Helicase C-terminal domain YS110_RS14325 PF08447 PAS fold YS110_RS14325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS14335 PF03831 PhnA domain YS110_RS14335 PF08274 PhnA Zinc-Ribbon YS110_RS14345 PF03475 3-alpha domain YS110_RS14345 PF03473 MOSC domain YS110_RS14350 PF01555 DNA methylase YS110_RS14365 PF08502 LeuA allosteric (dimerisation) domain YS110_RS14365 PF00682 HMGL-like YS110_RS14370 PF00877 NlpC/P60 family YS110_RS14375 PF00793 DAHP synthetase I family YS110_RS14390 PF04381 Putative exonuclease, RdgC YS110_RS14395 PF07670 Nucleoside recognition YS110_RS14405 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS14405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS14405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS14410 PF02803 Thiolase, C-terminal domain YS110_RS14410 PF00108 Thiolase, N-terminal domain YS110_RS14415 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS14420 PF00501 AMP-binding enzyme YS110_RS14425 PF00005 ABC transporter YS110_RS14445 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS14445 PF00005 ABC transporter YS110_RS14455 PF00892 EamA-like transporter family YS110_RS14470 PF09278 MerR, DNA binding YS110_RS14470 PF00376 MerR family regulatory protein YS110_RS14480 PF00403 Heavy-metal-associated domain YS110_RS14485 PF02203 Tar ligand binding domain homologue YS110_RS14485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS14485 PF00672 HAMP domain YS110_RS14490 PF00873 AcrB/AcrD/AcrF family YS110_RS14505 PF00072 Response regulator receiver domain YS110_RS14505 PF00486 Transcriptional regulatory protein, C terminal YS110_RS14510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS14510 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS14515 PF02463 RecF/RecN/SMC N terminal domain YS110_RS14525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family YS110_RS14530 PF00043 Glutathione S-transferase, C-terminal domain YS110_RS14530 PF02798 Glutathione S-transferase, N-terminal domain YS110_RS14535 PF03692 Putative zinc- or iron-chelating domain YS110_RS14560 PF01134 Glucose inhibited division protein A YS110_RS14560 PF13932 GidA associated domain YS110_RS14565 PF02527 rRNA small subunit methyltransferase G YS110_RS14570 PF01810 LysE type translocator YS110_RS14575 PF13614 AAA domain YS110_RS14590 PF17762 HTH domain found in ParB protein YS110_RS14590 PF02195 ParB-like nuclease domain YS110_RS14645 PF00677 Lumazine binding domain YS110_RS14650 PF00440 Bacterial regulatory proteins, tetR family YS110_RS14655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS14665 PF12704 MacB-like periplasmic core domain YS110_RS14665 PF02687 FtsX-like permease family YS110_RS14665 PF00005 ABC transporter YS110_RS14675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS14680 PF00072 Response regulator receiver domain YS110_RS14680 PF00486 Transcriptional regulatory protein, C terminal YS110_RS14695 PF00970 Oxidoreductase FAD-binding domain YS110_RS14695 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS14695 PF00175 Oxidoreductase NAD-binding domain YS110_RS14700 PF00561 alpha/beta hydrolase fold YS110_RS14710 PF00171 Aldehyde dehydrogenase family YS110_RS14715 PF02080 TrkA-C domain YS110_RS14715 PF02254 TrkA-N domain YS110_RS14720 PF02386 Cation transport protein YS110_RS14730 PF02705 K+ potassium transporter YS110_RS14740 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YS110_RS14745 PF02441 Flavoprotein YS110_RS14750 PF08859 DGC domain YS110_RS14755 PF02036 SCP-2 sterol transfer family YS110_RS14760 PF01136 Peptidase family U32 YS110_RS14765 PF01136 Peptidase family U32 YS110_RS14770 PF07690 Major Facilitator Superfamily YS110_RS14775 PF00563 EAL domain YS110_RS14775 PF03707 Bacterial signalling protein N terminal repeat YS110_RS14775 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS14785 PF12146 Serine aminopeptidase, S33 YS110_RS14790 PF01546 Peptidase family M20/M25/M40 YS110_RS14795 PF00672 HAMP domain YS110_RS14795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS14795 PF02203 Tar ligand binding domain homologue YS110_RS14800 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS14805 PF00672 HAMP domain YS110_RS14805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS14805 PF02203 Tar ligand binding domain homologue YS110_RS14810 PF08241 Methyltransferase domain YS110_RS14815 PF00561 alpha/beta hydrolase fold YS110_RS14820 PF01169 Uncharacterized protein family UPF0016 YS110_RS14825 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YS110_RS14830 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YS110_RS14875 PF06067 Domain of unknown function (DUF932) YS110_RS14880 PF02195 ParB-like nuclease domain YS110_RS14895 PF05284 Protein of unknown function (DUF736) YS110_RS14925 PF13614 AAA domain YS110_RS14940 PF10502 Signal peptidase, peptidase S26 YS110_RS14950 PF00982 Glycosyltransferase family 20 YS110_RS14955 PF02358 Trehalose-phosphatase YS110_RS14960 PF00072 Response regulator receiver domain YS110_RS14960 PF00486 Transcriptional regulatory protein, C terminal YS110_RS14965 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS14965 PF13492 GAF domain YS110_RS14965 PF13493 Domain of unknown function (DUF4118) YS110_RS14965 PF02702 Osmosensitive K+ channel His kinase sensor domain YS110_RS14970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YS110_RS14980 PF02669 K+-transporting ATPase, c chain YS110_RS14985 PF03814 Potassium-transporting ATPase A subunit YS110_RS15010 PF03466 LysR substrate binding domain YS110_RS15010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS15020 PF02534 Type IV secretory system Conjugative DNA transfer YS110_RS15030 PF00437 Type II/IV secretion system protein YS110_RS15035 PF04956 TrbC/VIRB2 family YS110_RS15045 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_RS15070 PF03524 Conjugal transfer protein YS110_RS15075 PF03743 Bacterial conjugation TrbI-like protein YS110_RS15085 PF00106 short chain dehydrogenase YS110_RS15100 PF00571 CBS domain YS110_RS15100 PF01380 SIS domain YS110_RS15105 PF00999 Sodium/hydrogen exchanger family YS110_RS15105 PF02080 TrkA-C domain YS110_RS15105 PF02254 TrkA-N domain YS110_RS15110 PF00563 EAL domain YS110_RS15110 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS15110 PF03707 Bacterial signalling protein N terminal repeat YS110_RS15115 PF00156 Phosphoribosyl transferase domain YS110_RS15150 PF10396 GTP-binding protein TrmE N-terminus YS110_RS15150 PF01926 50S ribosome-binding GTPase YS110_RS15150 PF12631 MnmE helical domain YS110_RS15155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_RS15160 PF02096 60Kd inner membrane protein YS110_RS15160 PF14849 YidC periplasmic domain YS110_RS15165 PF01809 Putative membrane protein insertion efficiency factor YS110_RS15170 PF00825 Ribonuclease P YS110_RS15175 PF00468 Ribosomal protein L34 YS110_RS15180 PF11638 DnaA N-terminal domain YS110_RS15180 PF00308 Bacterial dnaA protein YS110_RS15180 PF08299 Bacterial dnaA protein helix-turn-helix YS110_RS15185 PF02768 DNA polymerase III beta subunit, C-terminal domain YS110_RS15185 PF02767 DNA polymerase III beta subunit, central domain YS110_RS15185 PF00712 DNA polymerase III beta subunit, N-terminal domain YS110_RS15190 PF00204 DNA gyrase B YS110_RS15190 PF00986 DNA gyrase B subunit, carboxyl terminus YS110_RS15190 PF01751 Toprim domain YS110_RS15190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS15190 PF18053 DNA gyrase B subunit insert domain YS110_RS15195 PF02525 Flavodoxin-like fold YS110_RS15235 PF01569 PAP2 superfamily YS110_RS15240 PF01266 FAD dependent oxidoreductase YS110_RS15245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS15245 PF03466 LysR substrate binding domain YS110_RS15250 PF03616 Sodium/glutamate symporter YS110_RS15255 PF00027 Cyclic nucleotide-binding domain YS110_RS15255 PF13545 Crp-like helix-turn-helix domain YS110_RS15320 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain YS110_RS15320 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain YS110_RS15330 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS15330 PF13291 ACT domain YS110_RS15335 PF07715 TonB-dependent Receptor Plug Domain YS110_RS15335 PF00593 TonB dependent receptor YS110_RS15345 PF04773 FecR protein YS110_RS15345 PF16220 Domain of unknown function (DUF4880) YS110_RS15350 PF04542 Sigma-70 region 2 YS110_RS15350 PF08281 Sigma-70, region 4 YS110_RS15355 PF00593 TonB dependent receptor YS110_RS15355 PF07660 Secretin and TonB N terminus short domain YS110_RS15355 PF07715 TonB-dependent Receptor Plug Domain YS110_RS15365 PF08281 Sigma-70, region 4 YS110_RS15365 PF04542 Sigma-70 region 2 YS110_RS15370 PF07715 TonB-dependent Receptor Plug Domain YS110_RS15370 PF00593 TonB dependent receptor YS110_RS15375 PF16220 Domain of unknown function (DUF4880) YS110_RS15375 PF04773 FecR protein YS110_RS15380 PF04542 Sigma-70 region 2 YS110_RS15380 PF08281 Sigma-70, region 4 YS110_RS15385 PF07715 TonB-dependent Receptor Plug Domain YS110_RS15385 PF00593 TonB dependent receptor YS110_RS15385 PF07660 Secretin and TonB N terminus short domain YS110_RS15390 PF04773 FecR protein YS110_RS15390 PF16220 Domain of unknown function (DUF4880) YS110_RS15395 PF04542 Sigma-70 region 2 YS110_RS15395 PF08281 Sigma-70, region 4 YS110_RS15400 PF00501 AMP-binding enzyme YS110_RS15400 PF13193 AMP-binding enzyme C-terminal domain YS110_RS15405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS15405 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS15405 PF18158 Adaptive response protein AidB N-terminal domain YS110_RS15415 PF02954 Bacterial regulatory protein, Fis family YS110_RS15415 PF00158 Sigma-54 interaction domain YS110_RS15445 PF05685 Putative restriction endonuclease YS110_RS15450 PF00270 DEAD/DEAH box helicase YS110_RS15450 PF00271 Helicase conserved C-terminal domain YS110_RS15450 PF00570 HRDC domain YS110_RS15450 PF16124 RecQ zinc-binding YS110_RS15450 PF09382 RQC domain YS110_RS15460 PF02574 Homocysteine S-methyltransferase YS110_RS15460 PF00809 Pterin binding enzyme YS110_RS15460 PF02965 Vitamin B12 dependent methionine synthase, activation domain YS110_RS15460 PF02607 B12 binding domain YS110_RS15460 PF02310 B12 binding domain YS110_RS15470 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YS110_RS15470 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YS110_RS15490 PF02514 CobN/Magnesium Chelatase YS110_RS15495 PF07715 TonB-dependent Receptor Plug Domain YS110_RS15495 PF00593 TonB dependent receptor YS110_RS15505 PF00082 Subtilase family YS110_RS15515 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase YS110_RS15515 PF12801 4Fe-4S binding domain YS110_RS15515 PF13746 4Fe-4S dicluster domain YS110_RS15520 PF00355 Rieske [2Fe-2S] domain YS110_RS15520 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal YS110_RS15525 PF02954 Bacterial regulatory protein, Fis family YS110_RS15525 PF00072 Response regulator receiver domain YS110_RS15525 PF00158 Sigma-54 interaction domain YS110_RS15535 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS15535 PF00072 Response regulator receiver domain YS110_RS15540 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS15540 PF01627 Hpt domain YS110_RS15540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS15540 PF00072 Response regulator receiver domain YS110_RS15560 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS15560 PF00005 ABC transporter YS110_RS15565 PF00005 ABC transporter YS110_RS15570 PF03069 Acetamidase/Formamidase family YS110_RS15575 PF09723 Zinc ribbon domain YS110_RS15580 PF02965 Vitamin B12 dependent methionine synthase, activation domain YS110_RS15580 PF02574 Homocysteine S-methyltransferase YS110_RS15580 PF02310 B12 binding domain YS110_RS15580 PF02607 B12 binding domain YS110_RS15580 PF00809 Pterin binding enzyme YS110_RS15590 PF07715 TonB-dependent Receptor Plug Domain YS110_RS15590 PF00593 TonB dependent receptor YS110_RS15595 PF14525 AraC-binding-like domain YS110_RS15595 PF12833 Helix-turn-helix domain YS110_RS15600 PF02782 FGGY family of carbohydrate kinases, C-terminal domain YS110_RS15600 PF00370 FGGY family of carbohydrate kinases, N-terminal domain YS110_RS15605 PF01266 FAD dependent oxidoreductase YS110_RS15605 PF16901 C-terminal domain of alpha-glycerophosphate oxidase YS110_RS15610 PF01565 FAD binding domain YS110_RS15610 PF02913 FAD linked oxidases, C-terminal domain YS110_RS15630 PF01544 CorA-like Mg2+ transporter protein YS110_RS15635 PF00490 Delta-aminolevulinic acid dehydratase YS110_RS15640 PF03653 Uncharacterised protein family (UPF0093) YS110_RS15655 PF02129 X-Pro dipeptidyl-peptidase (S15 family) YS110_RS15660 PF00768 D-alanyl-D-alanine carboxypeptidase YS110_RS15660 PF07943 Penicillin-binding protein 5, C-terminal domain YS110_RS15665 PF00164 Ribosomal protein S12/S23 YS110_RS15670 PF00177 Ribosomal protein S7p/S5e YS110_RS15675 PF03144 Elongation factor Tu domain 2 YS110_RS15675 PF00009 Elongation factor Tu GTP binding domain YS110_RS15675 PF03764 Elongation factor G, domain IV YS110_RS15675 PF00679 Elongation factor G C-terminus YS110_RS15675 PF14492 Elongation Factor G, domain II YS110_RS15680 PF00009 Elongation factor Tu GTP binding domain YS110_RS15680 PF03143 Elongation factor Tu C-terminal domain YS110_RS15680 PF03144 Elongation factor Tu domain 2 YS110_RS15685 PF00338 Ribosomal protein S10p/S20e YS110_RS15690 PF00297 Ribosomal protein L3 YS110_RS15695 PF00573 Ribosomal protein L4/L1 family YS110_RS15700 PF00276 Ribosomal protein L23 YS110_RS15705 PF00181 Ribosomal Proteins L2, RNA binding domain YS110_RS15705 PF03947 Ribosomal Proteins L2, C-terminal domain YS110_RS15710 PF00203 Ribosomal protein S19 YS110_RS15715 PF00237 Ribosomal protein L22p/L17e YS110_RS15720 PF00189 Ribosomal protein S3, C-terminal domain YS110_RS15720 PF07650 KH domain YS110_RS15725 PF00252 Ribosomal protein L16p/L10e YS110_RS15730 PF00831 Ribosomal L29 protein YS110_RS15735 PF00366 Ribosomal protein S17 YS110_RS15740 PF08534 Redoxin YS110_RS15755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) YS110_RS15770 PF01322 Cytochrome C' YS110_RS15775 PF00578 AhpC/TSA family YS110_RS15785 PF00381 PTS HPr component phosphorylation site YS110_RS15790 PF05524 PEP-utilising enzyme, N-terminal YS110_RS15790 PF00391 PEP-utilising enzyme, mobile domain YS110_RS15790 PF02896 PEP-utilising enzyme, TIM barrel domain YS110_RS15795 PF00970 Oxidoreductase FAD-binding domain YS110_RS15795 PF00175 Oxidoreductase NAD-binding domain YS110_RS15800 PF13458 Periplasmic binding protein YS110_RS15805 PF02653 Branched-chain amino acid transport system / permease component YS110_RS15810 PF00005 ABC transporter YS110_RS15855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS15855 PF03466 LysR substrate binding domain YS110_RS15865 PF00672 HAMP domain YS110_RS15865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS15865 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS15870 PF13335 Magnesium chelatase, subunit ChlI C-terminal YS110_RS15870 PF01078 Magnesium chelatase, subunit ChlI YS110_RS15885 PF05199 GMC oxidoreductase YS110_RS15885 PF00732 GMC oxidoreductase YS110_RS15890 PF00487 Fatty acid desaturase YS110_RS15895 PF00175 Oxidoreductase NAD-binding domain YS110_RS15895 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS15895 PF00970 Oxidoreductase FAD-binding domain YS110_RS15900 PF12852 Cupin YS110_RS15900 PF12833 Helix-turn-helix domain YS110_RS15910 PF00543 Nitrogen regulatory protein P-II YS110_RS15915 PF00909 Ammonium Transporter Family YS110_RS15920 PF00563 EAL domain YS110_RS15920 PF00360 Phytochrome region YS110_RS15920 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS15920 PF01590 GAF domain YS110_RS15925 PF01565 FAD binding domain YS110_RS15935 PF13183 4Fe-4S dicluster domain YS110_RS15935 PF02754 Cysteine-rich domain YS110_RS15940 PF00563 EAL domain YS110_RS15940 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS15940 PF13188 PAS domain YS110_RS15940 PF03707 Bacterial signalling protein N terminal repeat YS110_RS15965 PF00255 Glutathione peroxidase YS110_RS15975 PF07690 Major Facilitator Superfamily YS110_RS15980 PF01168 Alanine racemase, N-terminal domain YS110_RS15980 PF00842 Alanine racemase, C-terminal domain YS110_RS15985 PF00034 Cytochrome c YS110_RS15985 PF03150 Di-haem cytochrome c peroxidase YS110_RS15995 PF03239 Iron permease FTR1 family YS110_RS16010 PF10634 Fe2+ transport protein YS110_RS16015 PF18073 Rubredoxin metal binding domain YS110_RS16020 PF01464 Transglycosylase SLT domain YS110_RS16020 PF00497 Bacterial extracellular solute-binding proteins, family 3 YS110_RS16025 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS16030 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS16035 PF07715 TonB-dependent Receptor Plug Domain YS110_RS16035 PF00593 TonB dependent receptor YS110_RS16045 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS16050 PF12911 N-terminal TM domain of oligopeptide transport permease C YS110_RS16050 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS16055 PF00005 ABC transporter YS110_RS16055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region YS110_RS16060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle YS110_RS16065 PF00005 ABC transporter YS110_RS16065 PF00664 ABC transporter transmembrane region YS110_RS16070 PF00005 ABC transporter YS110_RS16070 PF00664 ABC transporter transmembrane region YS110_RS16080 PF01618 MotA/TolQ/ExbB proton channel family YS110_RS16085 PF02472 Biopolymer transport protein ExbD/TolR YS110_RS16105 PF01063 Amino-transferase class IV YS110_RS16135 PF03060 Nitronate monooxygenase YS110_RS16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS16140 PF03466 LysR substrate binding domain YS110_RS16145 PF06779 Uncharacterised MFS-type transporter YbfB YS110_RS16190 PF00672 HAMP domain YS110_RS16190 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS16190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS16195 PF00486 Transcriptional regulatory protein, C terminal YS110_RS16195 PF00072 Response regulator receiver domain YS110_RS16200 PF07690 Major Facilitator Superfamily YS110_RS16210 PF00593 TonB dependent receptor YS110_RS16210 PF07715 TonB-dependent Receptor Plug Domain YS110_RS16210 PF07660 Secretin and TonB N terminus short domain YS110_RS16220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS16225 PF00005 ABC transporter YS110_RS16225 PF02687 FtsX-like permease family YS110_RS16225 PF12704 MacB-like periplasmic core domain YS110_RS16230 PF02321 Outer membrane efflux protein YS110_RS16245 PF07715 TonB-dependent Receptor Plug Domain YS110_RS16245 PF00593 TonB dependent receptor YS110_RS16265 PF02830 V4R domain YS110_RS16265 PF02954 Bacterial regulatory protein, Fis family YS110_RS16265 PF00158 Sigma-54 interaction domain YS110_RS16265 PF06505 Activator of aromatic catabolism YS110_RS16270 PF06099 Phenol hydroxylase subunit YS110_RS16275 PF02332 Methane/Phenol/Toluene Hydroxylase YS110_RS16280 PF02406 MmoB/DmpM family YS110_RS16285 PF04945 YHS domain YS110_RS16285 PF02332 Methane/Phenol/Toluene Hydroxylase YS110_RS16295 PF00970 Oxidoreductase FAD-binding domain YS110_RS16295 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS16295 PF00175 Oxidoreductase NAD-binding domain YS110_RS16300 PF03466 LysR substrate binding domain YS110_RS16300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS16310 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS16315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_RS16320 PF03928 Haem-degrading YS110_RS16330 PF00171 Aldehyde dehydrogenase family YS110_RS16340 PF00106 short chain dehydrogenase YS110_RS16345 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation YS110_RS16345 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_RS16350 PF07836 DmpG-like communication domain YS110_RS16350 PF00682 HMGL-like YS110_RS16355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS16355 PF13426 PAS domain YS110_RS16355 PF08447 PAS fold YS110_RS16370 PF01361 Tautomerase enzyme YS110_RS16380 PF00005 ABC transporter YS110_RS16385 PF01032 FecCD transport family YS110_RS16410 PF00593 TonB dependent receptor YS110_RS16410 PF07715 TonB-dependent Receptor Plug Domain YS110_RS16415 PF00753 Metallo-beta-lactamase superfamily YS110_RS16420 PF00440 Bacterial regulatory proteins, tetR family YS110_RS16430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_RS16435 PF01557 Fumarylacetoacetate (FAA) hydrolase family YS110_RS16440 PF01494 FAD binding domain YS110_RS16445 PF00107 Zinc-binding dehydrogenase YS110_RS16445 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS16450 PF00501 AMP-binding enzyme YS110_RS16450 PF13193 AMP-binding enzyme C-terminal domain YS110_RS16455 PF13181 Tetratricopeptide repeat YS110_RS16455 PF00535 Glycosyl transferase family 2 YS110_RS16470 PF03372 Endonuclease/Exonuclease/phosphatase family YS110_RS16475 PF00156 Phosphoribosyl transferase domain YS110_RS16485 PF08543 Phosphomethylpyrimidine kinase YS110_RS16490 PF02934 GatB/GatE catalytic domain YS110_RS16490 PF02637 GatB domain YS110_RS16495 PF13614 AAA domain YS110_RS16505 PF01425 Amidase YS110_RS16510 PF02686 Glu-tRNAGln amidotransferase C subunit YS110_RS16530 PF03717 Penicillin-binding Protein dimerisation domain YS110_RS16530 PF00905 Penicillin binding protein transpeptidase domain YS110_RS16535 PF00491 Arginase family YS110_RS16540 PF01925 Sulfite exporter TauE/SafE YS110_RS16545 PF00909 Ammonium Transporter Family YS110_RS16555 PF00732 GMC oxidoreductase YS110_RS16555 PF05199 GMC oxidoreductase YS110_RS16560 PF02405 Permease MlaE YS110_RS16565 PF00005 ABC transporter YS110_RS16580 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family YS110_RS16580 PF04055 Radical SAM superfamily YS110_RS16585 PF03099 Biotin/lipoate A/B protein ligase family YS110_RS16590 PF04359 Protein of unknown function (DUF493) YS110_RS16600 PF00119 ATP synthase A chain YS110_RS16605 PF00137 ATP synthase subunit C YS110_RS16610 PF00430 ATP synthase B/B' CF(0) YS110_RS16615 PF00213 ATP synthase delta (OSCP) subunit YS110_RS16620 PF00306 ATP synthase alpha/beta chain, C terminal domain YS110_RS16620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_RS16620 PF02874 ATP synthase alpha/beta family, beta-barrel domain YS110_RS16625 PF00231 ATP synthase YS110_RS16630 PF02874 ATP synthase alpha/beta family, beta-barrel domain YS110_RS16630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain YS110_RS16635 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain YS110_RS16645 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS16650 PF02321 Outer membrane efflux protein YS110_RS16655 PF00873 AcrB/AcrD/AcrF family YS110_RS16660 PF00529 HlyD membrane-fusion protein of T1SS YS110_RS16660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS16665 PF08361 MAATS-type transcriptional repressor, C-terminal region YS110_RS16665 PF00440 Bacterial regulatory proteins, tetR family YS110_RS16700 PF00584 SecE/Sec61-gamma subunits of protein translocation complex YS110_RS16705 PF00467 KOW motif YS110_RS16705 PF02357 Transcription termination factor nusG YS110_RS16710 PF00298 Ribosomal protein L11, RNA binding domain YS110_RS16710 PF03946 Ribosomal protein L11, N-terminal domain YS110_RS16715 PF00687 Ribosomal protein L1p/L10e family YS110_RS16720 PF00466 Ribosomal protein L10 YS110_RS16725 PF16320 Ribosomal protein L7/L12 dimerisation domain YS110_RS16725 PF00542 Ribosomal protein L7/L12 C-terminal domain YS110_RS16730 PF04563 RNA polymerase beta subunit YS110_RS16730 PF04560 RNA polymerase Rpb2, domain 7 YS110_RS16730 PF00562 RNA polymerase Rpb2, domain 6 YS110_RS16730 PF04565 RNA polymerase Rpb2, domain 3 YS110_RS16730 PF04561 RNA polymerase Rpb2, domain 2 YS110_RS16730 PF10385 RNA polymerase beta subunit external 1 domain YS110_RS16735 PF04997 RNA polymerase Rpb1, domain 1 YS110_RS16735 PF00623 RNA polymerase Rpb1, domain 2 YS110_RS16735 PF04983 RNA polymerase Rpb1, domain 3 YS110_RS16735 PF05000 RNA polymerase Rpb1, domain 4 YS110_RS16735 PF04998 RNA polymerase Rpb1, domain 5 YS110_RS16745 PF01189 16S rRNA methyltransferase RsmB/F YS110_RS16745 PF01029 NusB family YS110_RS16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS16755 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS16755 PF00989 PAS fold YS110_RS16755 PF00672 HAMP domain YS110_RS16760 PF02954 Bacterial regulatory protein, Fis family YS110_RS16760 PF00072 Response regulator receiver domain YS110_RS16760 PF00158 Sigma-54 interaction domain YS110_RS16770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_RS16775 PF02021 Uncharacterised protein family UPF0102 YS110_RS16780 PF13580 SIS domain YS110_RS16785 PF04972 BON domain YS110_RS16790 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YS110_RS16790 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YS110_RS16795 PF00437 Type II/IV secretion system protein YS110_RS16800 PF00027 Cyclic nucleotide-binding domain YS110_RS16800 PF13545 Crp-like helix-turn-helix domain YS110_RS16805 PF00437 Type II/IV secretion system protein YS110_RS16810 PF01168 Alanine racemase, N-terminal domain YS110_RS16815 PF02321 Outer membrane efflux protein YS110_RS16820 PF00005 ABC transporter YS110_RS16820 PF02687 FtsX-like permease family YS110_RS16820 PF12704 MacB-like periplasmic core domain YS110_RS16825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS16830 PF17754 MftR C-terminal domain YS110_RS16830 PF00440 Bacterial regulatory proteins, tetR family YS110_RS16835 PF00501 AMP-binding enzyme YS110_RS16835 PF13193 AMP-binding enzyme C-terminal domain YS110_RS16840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS16840 PF02785 Biotin carboxylase C-terminal domain YS110_RS16840 PF00289 Biotin carboxylase, N-terminal domain YS110_RS16840 PF00364 Biotin-requiring enzyme YS110_RS16850 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS16850 PF08447 PAS fold YS110_RS16850 PF08448 PAS fold YS110_RS16850 PF00563 EAL domain YS110_RS16855 PF00551 Formyl transferase YS110_RS16860 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS16865 PF00005 ABC transporter YS110_RS16870 PF00005 ABC transporter YS110_RS16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS16890 PF03466 LysR substrate binding domain YS110_RS16895 PF02913 FAD linked oxidases, C-terminal domain YS110_RS16895 PF01565 FAD binding domain YS110_RS16915 PF17874 MalT-like TPR region YS110_RS16915 PF00196 Bacterial regulatory proteins, luxR family YS110_RS16925 PF13458 Periplasmic binding protein YS110_RS16930 PF02653 Branched-chain amino acid transport system / permease component YS110_RS16940 PF00005 ABC transporter YS110_RS16940 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS16945 PF00005 ABC transporter YS110_RS16950 PF02913 FAD linked oxidases, C-terminal domain YS110_RS16950 PF01565 FAD binding domain YS110_RS16955 PF07730 Histidine kinase YS110_RS16955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS16955 PF05384 Sensor protein DegS YS110_RS16960 PF00196 Bacterial regulatory proteins, luxR family YS110_RS16960 PF00072 Response regulator receiver domain YS110_RS16965 PF07690 Major Facilitator Superfamily YS110_RS16970 PF07690 Major Facilitator Superfamily YS110_RS16975 PF00384 Molybdopterin oxidoreductase YS110_RS16975 PF14710 Respiratory nitrate reductase alpha N-terminal YS110_RS16975 PF01568 Molydopterin dinucleotide binding domain YS110_RS16980 PF13247 4Fe-4S dicluster domain YS110_RS16980 PF14711 Respiratory nitrate reductase beta C-terminal YS110_RS16985 PF02613 Nitrate reductase delta subunit YS110_RS16990 PF02665 Nitrate reductase gamma subunit YS110_RS17000 PF00484 Carbonic anhydrase YS110_RS17005 PF00593 TonB dependent receptor YS110_RS17005 PF07715 TonB-dependent Receptor Plug Domain YS110_RS17010 PF00317 Ribonucleotide reductase, all-alpha domain YS110_RS17010 PF02867 Ribonucleotide reductase, barrel domain YS110_RS17010 PF03477 ATP cone domain YS110_RS17035 PF01814 Hemerythrin HHE cation binding domain YS110_RS17060 PF00465 Iron-containing alcohol dehydrogenase YS110_RS17065 PF00933 Glycosyl hydrolase family 3 N terminal domain YS110_RS17070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YS110_RS17070 PF00384 Molybdopterin oxidoreductase YS110_RS17070 PF01568 Molydopterin dinucleotide binding domain YS110_RS17075 PF07687 Peptidase dimerisation domain YS110_RS17075 PF01546 Peptidase family M20/M25/M40 YS110_RS17080 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain YS110_RS17080 PF06974 Protein of unknown function (DUF1298) YS110_RS17115 PF00501 AMP-binding enzyme YS110_RS17115 PF14535 AMP-binding enzyme C-terminal domain YS110_RS17120 PF00005 ABC transporter YS110_RS17135 PF02653 Branched-chain amino acid transport system / permease component YS110_RS17140 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS17140 PF00005 ABC transporter YS110_RS17145 PF00501 AMP-binding enzyme YS110_RS17155 PF00027 Cyclic nucleotide-binding domain YS110_RS17155 PF13545 Crp-like helix-turn-helix domain YS110_RS17165 PF00183 Hsp90 protein YS110_RS17165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS17170 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase YS110_RS17170 PF12801 4Fe-4S binding domain YS110_RS17170 PF13746 4Fe-4S dicluster domain YS110_RS17175 PF01548 Transposase YS110_RS17175 PF02371 Transposase IS116/IS110/IS902 family YS110_RS17180 PF00072 Response regulator receiver domain YS110_RS17180 PF00196 Bacterial regulatory proteins, luxR family YS110_RS17185 PF03466 LysR substrate binding domain YS110_RS17185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS17190 PF01274 Malate synthase YS110_RS17200 PF01361 Tautomerase enzyme YS110_RS17205 PF07690 Major Facilitator Superfamily YS110_RS17210 PF13230 Glutamine amidotransferases class-II YS110_RS17215 PF00392 Bacterial regulatory proteins, gntR family YS110_RS17215 PF00155 Aminotransferase class I and II YS110_RS17220 PF02652 L-lactate permease YS110_RS17225 PF07729 FCD domain YS110_RS17225 PF00392 Bacterial regulatory proteins, gntR family YS110_RS17230 PF01070 FMN-dependent dehydrogenase YS110_RS17235 PF01565 FAD binding domain YS110_RS17235 PF09330 D-lactate dehydrogenase, membrane binding YS110_RS17240 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS17245 PF00375 Sodium:dicarboxylate symporter family YS110_RS17260 PF07715 TonB-dependent Receptor Plug Domain YS110_RS17260 PF00593 TonB dependent receptor YS110_RS17265 PF04773 FecR protein YS110_RS17265 PF16220 Domain of unknown function (DUF4880) YS110_RS17270 PF08281 Sigma-70, region 4 YS110_RS17270 PF04542 Sigma-70 region 2 YS110_RS17285 PF03485 Arginyl tRNA synthetase N terminal domain YS110_RS17285 PF05746 DALR anticodon binding domain YS110_RS17285 PF00750 tRNA synthetases class I (R) YS110_RS17295 PF13462 Thioredoxin YS110_RS17305 PF00474 Sodium:solute symporter family YS110_RS17315 PF00005 ABC transporter YS110_RS17320 PF04963 Sigma-54 factor, core binding domain YS110_RS17320 PF04552 Sigma-54, DNA binding domain YS110_RS17320 PF00309 Sigma-54 factor, Activator interacting domain (AID) YS110_RS17330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS17330 PF00672 HAMP domain YS110_RS17330 PF02203 Tar ligand binding domain homologue YS110_RS17335 PF02926 THUMP domain YS110_RS17335 PF01170 Putative RNA methylase family UPF0020 YS110_RS17345 PF02810 SEC-C motif YS110_RS17345 PF07517 SecA DEAD-like domain YS110_RS17345 PF01043 SecA preprotein cross-linking domain YS110_RS17345 PF07516 SecA Wing and Scaffold domain YS110_RS17350 PF07536 HWE histidine kinase YS110_RS17350 PF13426 PAS domain YS110_RS17355 PF00072 Response regulator receiver domain YS110_RS17355 PF00486 Transcriptional regulatory protein, C terminal YS110_RS17360 PF03707 Bacterial signalling protein N terminal repeat YS110_RS17360 PF00563 EAL domain YS110_RS17360 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS17365 PF00672 HAMP domain YS110_RS17365 PF02203 Tar ligand binding domain homologue YS110_RS17365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS17370 PF02464 Competence-damaged protein YS110_RS17375 PF04608 Phosphatidylglycerophosphatase A YS110_RS17390 PF01451 Low molecular weight phosphotyrosine protein phosphatase YS110_RS17410 PF07963 Prokaryotic N-terminal methylation motif YS110_RS17410 PF00114 Pilin (bacterial filament) YS110_RS17430 PF00586 AIR synthase related protein, N-terminal domain YS110_RS17430 PF02769 AIR synthase related protein, C-terminal domain YS110_RS17435 PF04107 Glutamate-cysteine ligase family 2(GCS2) YS110_RS17450 PF04379 ApaG domain YS110_RS17455 PF00834 Ribulose-phosphate 3 epimerase family YS110_RS17465 PF13419 Haloacid dehalogenase-like hydrolase YS110_RS17470 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS17470 PF03707 Bacterial signalling protein N terminal repeat YS110_RS17470 PF00563 EAL domain YS110_RS17475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS17475 PF00672 HAMP domain YS110_RS17475 PF02203 Tar ligand binding domain homologue YS110_RS17490 PF04715 Anthranilate synthase component I, N terminal region YS110_RS17490 PF00425 chorismate binding enzyme YS110_RS17500 PF00117 Glutamine amidotransferase class-I YS110_RS17505 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus YS110_RS17505 PF01048 Phosphorylase superfamily YS110_RS17510 PF00563 EAL domain YS110_RS17510 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS17510 PF03707 Bacterial signalling protein N terminal repeat YS110_RS17520 PF01545 Cation efflux family YS110_RS17520 PF16916 Dimerisation domain of Zinc Transporter YS110_RS17525 PF02580 D-Tyr-tRNA(Tyr) deacylase YS110_RS17530 PF00474 Sodium:solute symporter family YS110_RS17540 PF08946 Osmosensory transporter coiled coil YS110_RS17540 PF00083 Sugar (and other) transporter YS110_RS17545 PF13609 Gram-negative porin YS110_RS17555 PF00005 ABC transporter YS110_RS17555 PF17755 UvrA DNA-binding domain YS110_RS17555 PF17760 UvrA interaction domain YS110_RS17560 PF02203 Tar ligand binding domain homologue YS110_RS17560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS17560 PF00672 HAMP domain YS110_RS17565 PF00654 Voltage gated chloride channel YS110_RS17570 PF07690 Major Facilitator Superfamily YS110_RS17575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS17575 PF03466 LysR substrate binding domain YS110_RS17585 PF02423 Ornithine cyclodeaminase/mu-crystallin family YS110_RS17590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III YS110_RS17590 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP YS110_RS17600 PF00009 Elongation factor Tu GTP binding domain YS110_RS17600 PF03144 Elongation factor Tu domain 2 YS110_RS17600 PF16658 Class II release factor RF3, C-terminal domain YS110_RS17610 PF07715 TonB-dependent Receptor Plug Domain YS110_RS17610 PF00593 TonB dependent receptor YS110_RS17635 PF17761 DUF1016 N-terminal domain YS110_RS17635 PF06250 YhcG PDDEXK nuclease domain YS110_RS17670 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain YS110_RS17670 PF05221 S-adenosyl-L-homocysteine hydrolase YS110_RS17675 PF01479 S4 domain YS110_RS17675 PF01728 FtsJ-like methyltransferase YS110_RS17680 PF02219 Methylenetetrahydrofolate reductase YS110_RS17690 PF03330 Lytic transglycolase YS110_RS17695 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ YS110_RS17700 PF08308 PEGA domain YS110_RS17700 PF00069 Protein kinase domain YS110_RS17705 PF00572 Ribosomal protein L13 YS110_RS17710 PF00380 Ribosomal protein S9/S16 YS110_RS17715 PF01521 Iron-sulphur cluster biosynthesis YS110_RS17720 PF07690 Major Facilitator Superfamily YS110_RS17725 PF03702 Anhydro-N-acetylmuramic acid kinase YS110_RS17730 PF04225 Opacity-associated protein A LysM-like domain YS110_RS17730 PF01551 Peptidase family M23 YS110_RS17735 PF01479 S4 domain YS110_RS17735 PF00579 tRNA synthetases class I (W and Y) YS110_RS17740 PF01814 Hemerythrin HHE cation binding domain YS110_RS17745 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_RS17745 PF12804 MobA-like NTP transferase domain YS110_RS17760 PF00226 DnaJ domain YS110_RS17760 PF01556 DnaJ C terminal domain YS110_RS17765 PF01037 Lrp/AsnC ligand binding domain YS110_RS17770 PF01380 SIS domain YS110_RS17850 PF13007 Transposase C of IS166 homeodomain YS110_RS17850 PF13005 zinc-finger binding domain of transposase IS66 YS110_RS17850 PF13817 IS66 C-terminal element YS110_RS17850 PF03050 Transposase IS66 family YS110_RS17880 PF09722 Protein of unknown function (DUF2384) YS110_RS17900 PF00665 Integrase core domain YS110_RS17905 PF11426 Tn7 transposition regulator TnsC YS110_RS17905 PF13401 AAA domain YS110_RS17945 PF00216 Bacterial DNA-binding protein YS110_RS17955 PF02463 RecF/RecN/SMC N terminal domain YS110_RS17955 PF06470 SMC proteins Flexible Hinge Domain YS110_RS17980 PF07690 Major Facilitator Superfamily YS110_RS17985 PF07690 Major Facilitator Superfamily YS110_RS17990 PF00144 Beta-lactamase YS110_RS17995 PF03466 LysR substrate binding domain YS110_RS17995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS18015 PF14031 Putative serine dehydratase domain YS110_RS18015 PF01168 Alanine racemase, N-terminal domain YS110_RS18020 PF00300 Histidine phosphatase superfamily (branch 1) YS110_RS18030 PF01171 PP-loop family YS110_RS18035 PF00563 EAL domain YS110_RS18035 PF03707 Bacterial signalling protein N terminal repeat YS110_RS18035 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS18050 PF00106 short chain dehydrogenase YS110_RS18060 PF06508 Queuosine biosynthesis protein QueC YS110_RS18080 PF02798 Glutathione S-transferase, N-terminal domain YS110_RS18080 PF00043 Glutathione S-transferase, C-terminal domain YS110_RS18085 PF01812 5-formyltetrahydrofolate cyclo-ligase family YS110_RS18090 PF14718 Soluble lytic murein transglycosylase L domain YS110_RS18090 PF01464 Transglycosylase SLT domain YS110_RS18110 PF13640 2OG-Fe(II) oxygenase superfamily YS110_RS18110 PF18331 PKHD-type hydroxylase C-terminal domain YS110_RS18115 PF01070 FMN-dependent dehydrogenase YS110_RS18120 PF07715 TonB-dependent Receptor Plug Domain YS110_RS18120 PF00593 TonB dependent receptor YS110_RS18140 PF00501 AMP-binding enzyme YS110_RS18140 PF13193 AMP-binding enzyme C-terminal domain YS110_RS18155 PF00351 Biopterin-dependent aromatic amino acid hydroxylase YS110_RS18160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YS110_RS18170 PF00561 alpha/beta hydrolase fold YS110_RS18175 PF01037 Lrp/AsnC ligand binding domain YS110_RS18185 PF00571 CBS domain YS110_RS18185 PF03471 Transporter associated domain YS110_RS18190 PF00795 Carbon-nitrogen hydrolase YS110_RS18195 PF07977 FabA-like domain YS110_RS18200 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_RS18200 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_RS18205 PF02091 Glycyl-tRNA synthetase alpha subunit YS110_RS18210 PF05746 DALR anticodon binding domain YS110_RS18210 PF02092 Glycyl-tRNA synthetase beta subunit YS110_RS18240 PF00005 ABC transporter YS110_RS18250 PF02632 BioY family YS110_RS18255 PF00501 AMP-binding enzyme YS110_RS18255 PF13193 AMP-binding enzyme C-terminal domain YS110_RS18260 PF02803 Thiolase, C-terminal domain YS110_RS18260 PF00108 Thiolase, N-terminal domain YS110_RS18270 PF01867 CRISPR associated protein Cas1 YS110_RS18275 PF18019 HD domain YS110_RS18280 PF01381 Helix-turn-helix YS110_RS18290 PF09611 CRISPR-associated protein (Cas_Csy1) YS110_RS18295 PF09614 CRISPR-associated protein (Cas_Csy2) YS110_RS18300 PF09615 CRISPR-associated protein (Cas_Csy3) YS110_RS18305 PF09618 CRISPR-associated protein (Cas_Csy4) YS110_RS18315 PF17864 RuvB AAA lid domain YS110_RS18315 PF05491 RuvB C-terminal winged helix domain YS110_RS18315 PF05496 Holliday junction DNA helicase RuvB P-loop domain YS110_RS18320 PF01330 RuvA N terminal domain YS110_RS18320 PF07499 RuvA, C-terminal domain YS110_RS18325 PF02562 PhoH-like protein YS110_RS18330 PF02130 Uncharacterized protein family UPF0054 YS110_RS18335 PF01925 Sulfite exporter TauE/SafE YS110_RS18345 PF01476 LysM domain YS110_RS18345 PF04972 BON domain YS110_RS18350 PF03309 Type III pantothenate kinase YS110_RS18370 PF00106 short chain dehydrogenase YS110_RS18375 PF16363 GDP-mannose 4,6 dehydratase YS110_RS18380 PF04321 RmlD substrate binding domain YS110_RS18385 PF00483 Nucleotidyl transferase YS110_RS18390 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase YS110_RS18395 PF00437 Type II/IV secretion system protein YS110_RS18395 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YS110_RS18400 PF00482 Type II secretion system (T2SS), protein F YS110_RS18405 PF08334 Type II secretion system (T2SS), protein G YS110_RS18405 PF07963 Prokaryotic N-terminal methylation motif YS110_RS18415 PF07963 Prokaryotic N-terminal methylation motif YS110_RS18445 PF03958 Bacterial type II/III secretion system short domain YS110_RS18445 PF00263 Bacterial type II and III secretion system protein YS110_RS18460 PF14524 Wzt C-terminal domain YS110_RS18460 PF00005 ABC transporter YS110_RS18470 PF09312 SurA N-terminal domain YS110_RS18470 PF00639 PPIC-type PPIASE domain YS110_RS18485 PF00535 Glycosyl transferase family 2 YS110_RS18490 PF00535 Glycosyl transferase family 2 YS110_RS18515 PF00696 Amino acid kinase family YS110_RS18520 PF01702 Queuine tRNA-ribosyltransferase YS110_RS18525 PF00582 Universal stress protein family YS110_RS18540 PF00580 UvrD/REP helicase N-terminal domain YS110_RS18540 PF13361 UvrD-like helicase C-terminal domain YS110_RS18545 PF03547 Membrane transport protein YS110_RS18550 PF00710 Asparaginase, N-terminal YS110_RS18550 PF17763 Glutaminase/Asparaginase C-terminal domain YS110_RS18555 PF18319 PriA DNA helicase Cys-rich region (CRR) domain YS110_RS18555 PF18074 Primosomal protein N C-terminal domain YS110_RS18555 PF17764 3′ DNA-binding domain (3′BD) YS110_RS18555 PF00271 Helicase conserved C-terminal domain YS110_RS18555 PF00270 DEAD/DEAH box helicase YS110_RS18560 PF01208 Uroporphyrinogen decarboxylase (URO-D) YS110_RS18565 PF01425 Amidase YS110_RS18570 PF05532 CsbD-like YS110_RS18575 PF01053 Cys/Met metabolism PLP-dependent enzyme YS110_RS18580 PF13380 CoA binding domain YS110_RS18600 PF00578 AhpC/TSA family YS110_RS18605 PF13098 Thioredoxin-like domain YS110_RS18605 PF11412 Disulphide bond corrector protein DsbC YS110_RS18605 PF02683 Cytochrome C biogenesis protein transmembrane region YS110_RS18645 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS18650 PF02567 Phenazine biosynthesis-like protein YS110_RS18655 PF00155 Aminotransferase class I and II YS110_RS18660 PF00892 EamA-like transporter family YS110_RS18670 PF00155 Aminotransferase class I and II YS110_RS18670 PF00392 Bacterial regulatory proteins, gntR family YS110_RS18680 PF00669 Bacterial flagellin N-terminal helical region YS110_RS18690 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YS110_RS18690 PF10135 Rod binding protein YS110_RS18695 PF02119 Flagellar P-ring protein YS110_RS18700 PF02899 Phage integrase, N-terminal SAM-like domain YS110_RS18700 PF00589 Phage integrase family YS110_RS18710 PF02492 CobW/HypB/UreG, nucleotide-binding domain YS110_RS18710 PF07683 Cobalamin synthesis protein cobW C-terminal domain YS110_RS18715 PF01258 Prokaryotic dksA/traR C4-type zinc finger YS110_RS18725 PF00227 Proteasome subunit YS110_RS18730 PF07724 AAA domain (Cdc48 subfamily) YS110_RS18730 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS18735 PF00158 Sigma-54 interaction domain YS110_RS18740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS18740 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS18760 PF00005 ABC transporter YS110_RS18760 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS18765 PF00296 Luciferase-like monooxygenase YS110_RS18770 PF08028 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS18770 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS18770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS18775 PF00005 ABC transporter YS110_RS18790 PF02653 Branched-chain amino acid transport system / permease component YS110_RS18795 PF02653 Branched-chain amino acid transport system / permease component YS110_RS18800 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS18800 PF00005 ABC transporter YS110_RS18805 PF00296 Luciferase-like monooxygenase YS110_RS18810 PF03358 NADPH-dependent FMN reductase YS110_RS18820 PF00581 Rhodanese-like domain YS110_RS18830 PF02381 MraZ protein, putative antitoxin-like YS110_RS18835 PF01795 MraW methylase family YS110_RS18840 PF04999 Cell division protein FtsL YS110_RS18845 PF03717 Penicillin-binding Protein dimerisation domain YS110_RS18845 PF00905 Penicillin binding protein transpeptidase domain YS110_RS18850 PF02875 Mur ligase family, glutamate ligase domain YS110_RS18850 PF08245 Mur ligase middle domain YS110_RS18855 PF01225 Mur ligase family, catalytic domain YS110_RS18855 PF02875 Mur ligase family, glutamate ligase domain YS110_RS18855 PF08245 Mur ligase middle domain YS110_RS18860 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YS110_RS18860 PF00953 Glycosyl transferase family 4 YS110_RS18865 PF02875 Mur ligase family, glutamate ligase domain YS110_RS18865 PF08245 Mur ligase middle domain YS110_RS18870 PF01098 Cell cycle protein YS110_RS18875 PF04101 Glycosyltransferase family 28 C-terminal domain YS110_RS18875 PF03033 Glycosyltransferase family 28 N-terminal domain YS110_RS18880 PF01225 Mur ligase family, catalytic domain YS110_RS18880 PF02875 Mur ligase family, glutamate ligase domain YS110_RS18880 PF08245 Mur ligase middle domain YS110_RS18885 PF07478 D-ala D-ala ligase C-terminus YS110_RS18885 PF01820 D-ala D-ala ligase N-terminus YS110_RS18890 PF08478 POTRA domain, FtsQ-type YS110_RS18890 PF03799 Cell division protein FtsQ YS110_RS18895 PF02491 SHS2 domain inserted in FTSA YS110_RS18900 PF12327 FtsZ family, C-terminal domain YS110_RS18900 PF00091 Tubulin/FtsZ family, GTPase domain YS110_RS18905 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase YS110_RS18915 PF01964 Radical SAM ThiC family YS110_RS18915 PF13667 ThiC-associated domain YS110_RS18920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS18920 PF02203 Tar ligand binding domain homologue YS110_RS18920 PF00672 HAMP domain YS110_RS18925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS18925 PF00672 HAMP domain YS110_RS18925 PF02203 Tar ligand binding domain homologue YS110_RS18935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS18935 PF03466 LysR substrate binding domain YS110_RS18945 PF02075 Crossover junction endodeoxyribonuclease RuvC YS110_RS18950 PF00912 Transglycosylase YS110_RS18955 PF01488 Shikimate / quinate 5-dehydrogenase YS110_RS18955 PF08501 Shikimate dehydrogenase substrate binding domain YS110_RS18955 PF18317 Shikimate 5'-dehydrogenase C-terminal domain YS110_RS18965 PF00773 RNB domain YS110_RS18975 PF05728 Uncharacterised protein family (UPF0227) YS110_RS18980 PF01098 Cell cycle protein YS110_RS18985 PF01523 Putative modulator of DNA gyrase YS110_RS18995 PF00793 DAHP synthetase I family YS110_RS19005 PF01225 Mur ligase family, catalytic domain YS110_RS19005 PF02875 Mur ligase family, glutamate ligase domain YS110_RS19005 PF08245 Mur ligase middle domain YS110_RS19015 PF08534 Redoxin YS110_RS19020 PF00364 Biotin-requiring enzyme YS110_RS19025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain YS110_RS19025 PF00289 Biotin carboxylase, N-terminal domain YS110_RS19025 PF02785 Biotin carboxylase C-terminal domain YS110_RS19040 PF00294 pfkB family carbohydrate kinase YS110_RS19055 PF00268 Ribonucleotide reductase, small chain YS110_RS19060 PF00317 Ribonucleotide reductase, all-alpha domain YS110_RS19060 PF03477 ATP cone domain YS110_RS19060 PF02867 Ribonucleotide reductase, barrel domain YS110_RS19065 PF01510 N-acetylmuramoyl-L-alanine amidase YS110_RS19070 PF00158 Sigma-54 interaction domain YS110_RS19070 PF00072 Response regulator receiver domain YS110_RS19070 PF02954 Bacterial regulatory protein, Fis family YS110_RS19075 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS19075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS19085 PF01578 Cytochrome C assembly protein YS110_RS19090 PF02978 Signal peptide binding domain YS110_RS19090 PF02881 SRP54-type protein, helical bundle domain YS110_RS19090 PF00448 SRP54-type protein, GTPase domain YS110_RS19095 PF00578 AhpC/TSA family YS110_RS19100 PF06250 YhcG PDDEXK nuclease domain YS110_RS19100 PF17761 DUF1016 N-terminal domain YS110_RS19110 PF04055 Radical SAM superfamily YS110_RS19110 PF01938 TRAM domain YS110_RS19110 PF00919 Uncharacterized protein family UPF0004 YS110_RS19120 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS19140 PF10411 Disulfide bond isomerase protein N-terminus YS110_RS19140 PF13098 Thioredoxin-like domain YS110_RS19145 PF01494 FAD binding domain YS110_RS19150 PF06071 Protein of unknown function (DUF933) YS110_RS19150 PF01926 50S ribosome-binding GTPase YS110_RS19160 PF03449 Transcription elongation factor, N-terminal YS110_RS19160 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_RS19165 PF02824 TGS domain YS110_RS19165 PF04607 Region found in RelA / SpoT proteins YS110_RS19165 PF13291 ACT domain YS110_RS19170 PF01192 RNA polymerase Rpb6 YS110_RS19175 PF00625 Guanylate kinase YS110_RS19180 PF08340 Domain of unknown function (DUF1732) YS110_RS19180 PF03755 YicC-like family, N-terminal region YS110_RS19185 PF03793 PASTA domain YS110_RS19185 PF00069 Protein kinase domain YS110_RS19195 PF03725 3' exoribonuclease family, domain 2 YS110_RS19195 PF01138 3' exoribonuclease family, domain 1 YS110_RS19200 PF01725 Ham1 family YS110_RS19205 PF04055 Radical SAM superfamily YS110_RS19205 PF06969 HemN C-terminal domain YS110_RS19240 PF01261 Xylose isomerase-like TIM barrel YS110_RS19245 PF05161 MOFRL family YS110_RS19245 PF13660 Domain of unknown function (DUF4147) YS110_RS19250 PF00392 Bacterial regulatory proteins, gntR family YS110_RS19250 PF07729 FCD domain YS110_RS19260 PF07687 Peptidase dimerisation domain YS110_RS19260 PF01546 Peptidase family M20/M25/M40 YS110_RS19265 PF07687 Peptidase dimerisation domain YS110_RS19265 PF01546 Peptidase family M20/M25/M40 YS110_RS19270 PF03707 Bacterial signalling protein N terminal repeat YS110_RS19270 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS19270 PF00563 EAL domain YS110_RS19275 PF00672 HAMP domain YS110_RS19275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS19275 PF02203 Tar ligand binding domain homologue YS110_RS19280 PF00860 Permease family YS110_RS19295 PF02472 Biopolymer transport protein ExbD/TolR YS110_RS19300 PF01618 MotA/TolQ/ExbB proton channel family YS110_RS19310 PF00005 ABC transporter YS110_RS19315 PF01032 FecCD transport family YS110_RS19320 PF09957 Bacterial antitoxin of type II TA system, VapB YS110_RS19355 PF07715 TonB-dependent Receptor Plug Domain YS110_RS19355 PF00593 TonB dependent receptor YS110_RS19385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS19385 PF03459 TOBE domain YS110_RS19390 PF03949 Malic enzyme, NAD binding domain YS110_RS19390 PF00390 Malic enzyme, N-terminal domain YS110_RS19390 PF01515 Phosphate acetyl/butaryl transferase YS110_RS19400 PF00005 ABC transporter YS110_RS19405 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS19410 PF07690 Major Facilitator Superfamily YS110_RS19415 PF01039 Carboxyl transferase domain YS110_RS19415 PF17848 Acetyl-coA carboxylase zinc finger domain YS110_RS19420 PF00290 Tryptophan synthase alpha chain YS110_RS19425 PF00291 Pyridoxal-phosphate dependent enzyme YS110_RS19430 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase YS110_RS19435 PF01416 tRNA pseudouridine synthase YS110_RS19445 PF02774 Semialdehyde dehydrogenase, dimerisation domain YS110_RS19445 PF01118 Semialdehyde dehydrogenase, NAD binding domain YS110_RS19455 PF00180 Isocitrate/isopropylmalate dehydrogenase YS110_RS19460 PF00694 Aconitase C-terminal domain YS110_RS19465 PF00330 Aconitase family (aconitate hydratase) YS110_RS19475 PF00471 Ribosomal protein L33 YS110_RS19480 PF00830 Ribosomal L28 family YS110_RS19485 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS19495 PF13491 4TM region of DNA translocase FtsK/SpoIIIE YS110_RS19495 PF17854 FtsK alpha domain YS110_RS19495 PF09397 Ftsk gamma domain YS110_RS19495 PF01580 FtsK/SpoIIIE family YS110_RS19500 PF01547 Bacterial extracellular solute-binding protein YS110_RS19505 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS19505 PF00072 Response regulator receiver domain YS110_RS19510 PF03548 Outer membrane lipoprotein carrier protein LolA YS110_RS19515 PF00196 Bacterial regulatory proteins, luxR family YS110_RS19515 PF00072 Response regulator receiver domain YS110_RS19550 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS19550 PF00107 Zinc-binding dehydrogenase YS110_RS19555 PF16925 Tetracyclin repressor-like, C-terminal domain YS110_RS19555 PF00440 Bacterial regulatory proteins, tetR family YS110_RS19565 PF03167 Uracil DNA glycosylase superfamily YS110_RS19645 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS19645 PF16193 AAA C-terminal domain YS110_RS19645 PF12002 MgsA AAA+ ATPase C terminal YS110_RS19650 PF02653 Branched-chain amino acid transport system / permease component YS110_RS19655 PF11862 Domain of unknown function (DUF3382) YS110_RS19655 PF02653 Branched-chain amino acid transport system / permease component YS110_RS19660 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS19660 PF00005 ABC transporter YS110_RS19665 PF00005 ABC transporter YS110_RS19675 PF01865 Protein of unknown function DUF47 YS110_RS19680 PF01384 Phosphate transporter family YS110_RS19695 PF00886 Ribosomal protein S16 YS110_RS19700 PF05239 PRC-barrel domain YS110_RS19700 PF01782 RimM N-terminal domain YS110_RS19705 PF01746 tRNA (Guanine-1)-methyltransferase YS110_RS19710 PF01245 Ribosomal protein L19 YS110_RS19715 PF00293 NUDIX domain YS110_RS19720 PF03186 CobD/Cbib protein YS110_RS19720 PF17113 Regulatory signalling modulator protein AmpE YS110_RS19725 PF00155 Aminotransferase class I and II YS110_RS19735 PF00916 Sulfate permease family YS110_RS19735 PF01740 STAS domain YS110_RS19740 PF03193 RsgA GTPase YS110_RS19745 PF01329 Pterin 4 alpha carbinolamine dehydratase YS110_RS19750 PF01435 Peptidase family M48 YS110_RS19755 PF00929 Exonuclease YS110_RS19760 PF13458 Periplasmic binding protein YS110_RS19765 PF00271 Helicase conserved C-terminal domain YS110_RS19765 PF00270 DEAD/DEAH box helicase YS110_RS19770 PF13188 PAS domain YS110_RS19770 PF00563 EAL domain YS110_RS19770 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS19770 PF03707 Bacterial signalling protein N terminal repeat YS110_RS19775 PF07690 Major Facilitator Superfamily YS110_RS19785 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase YS110_RS19785 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase YS110_RS19790 PF00127 Copper binding proteins, plastocyanin/azurin family YS110_RS19795 PF00478 IMP dehydrogenase / GMP reductase domain YS110_RS19800 PF13361 UvrD-like helicase C-terminal domain YS110_RS19800 PF00580 UvrD/REP helicase N-terminal domain YS110_RS19810 PF00245 Alkaline phosphatase YS110_RS19815 PF00245 Alkaline phosphatase YS110_RS19830 PF01636 Phosphotransferase enzyme family YS110_RS19845 PF01367 5'-3' exonuclease, C-terminal SAM fold YS110_RS19845 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain YS110_RS19845 PF00476 DNA polymerase family A YS110_RS19845 PF01612 3'-5' exonuclease YS110_RS19855 PF01738 Dienelactone hydrolase family YS110_RS19870 PF00593 TonB dependent receptor YS110_RS19870 PF07715 TonB-dependent Receptor Plug Domain YS110_RS19875 PF00891 O-methyltransferase domain YS110_RS19885 PF04397 LytTr DNA-binding domain YS110_RS19885 PF00072 Response regulator receiver domain YS110_RS19890 PF06580 Histidine kinase YS110_RS19890 PF07694 5TMR of 5TMR-LYT YS110_RS19895 PF00206 Lyase YS110_RS19895 PF14698 Argininosuccinate lyase C-terminal YS110_RS19900 PF14863 Alkyl sulfatase dimerisation YS110_RS19900 PF00753 Metallo-beta-lactamase superfamily YS110_RS19900 PF14864 Alkyl sulfatase C-terminal YS110_RS19905 PF05199 GMC oxidoreductase YS110_RS19905 PF00732 GMC oxidoreductase YS110_RS19910 PF00171 Aldehyde dehydrogenase family YS110_RS19915 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term YS110_RS19915 PF12833 Helix-turn-helix domain YS110_RS19920 PF03401 Tripartite tricarboxylate transporter family receptor YS110_RS19925 PF00753 Metallo-beta-lactamase superfamily YS110_RS19925 PF10996 Beta-Casp domain YS110_RS19925 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain YS110_RS19930 PF01556 DnaJ C terminal domain YS110_RS19930 PF00684 DnaJ central domain YS110_RS19930 PF00226 DnaJ domain YS110_RS19935 PF00012 Hsp70 protein YS110_RS19940 PF01025 GrpE YS110_RS19945 PF01250 Ribosomal protein S6 YS110_RS19955 PF01084 Ribosomal protein S18 YS110_RS19960 PF03948 Ribosomal protein L9, C-terminal domain YS110_RS19960 PF01281 Ribosomal protein L9, N-terminal domain YS110_RS19965 PF00772 DnaB-like helicase N terminal domain YS110_RS19965 PF03796 DnaB-like helicase C terminal domain YS110_RS19980 PF00437 Type II/IV secretion system protein YS110_RS19980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain YS110_RS19990 PF01970 Tripartite tricarboxylate transporter TctA family YS110_RS20005 PF03707 Bacterial signalling protein N terminal repeat YS110_RS20005 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS20005 PF00563 EAL domain YS110_RS20010 PF00892 EamA-like transporter family YS110_RS20015 PF00107 Zinc-binding dehydrogenase YS110_RS20015 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS20025 PF03466 LysR substrate binding domain YS110_RS20025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS20030 PF13593 SBF-like CPA transporter family (DUF4137) YS110_RS20035 PF02690 Na+/Pi-cotransporter YS110_RS20050 PF01252 Signal peptidase (SPase) II YS110_RS20055 PF08264 Anticodon-binding domain of tRNA YS110_RS20055 PF00133 tRNA synthetases class I (I, L, M and V) YS110_RS20055 PF06827 Zinc finger found in FPG and IleRS YS110_RS20060 PF06574 FAD synthetase YS110_RS20060 PF01687 Riboflavin kinase YS110_RS20075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS20075 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS20080 PF00072 Response regulator receiver domain YS110_RS20080 PF00486 Transcriptional regulatory protein, C terminal YS110_RS20095 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS20095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS20095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS20100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS20100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS20100 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS20105 PF04337 Protein of unknown function, DUF480 YS110_RS20110 PF00551 Formyl transferase YS110_RS20120 PF00486 Transcriptional regulatory protein, C terminal YS110_RS20120 PF00072 Response regulator receiver domain YS110_RS20125 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS20125 PF00672 HAMP domain YS110_RS20125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS20140 PF01029 NusB family YS110_RS20140 PF01189 16S rRNA methyltransferase RsmB/F YS110_RS20150 PF00155 Aminotransferase class I and II YS110_RS20150 PF00392 Bacterial regulatory proteins, gntR family YS110_RS20155 PF00486 Transcriptional regulatory protein, C terminal YS110_RS20155 PF00072 Response regulator receiver domain YS110_RS20180 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YS110_RS20180 PF01926 50S ribosome-binding GTPase YS110_RS20195 PF01926 50S ribosome-binding GTPase YS110_RS20195 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YS110_RS20235 PF02142 MGS-like domain YS110_RS20245 PF00912 Transglycosylase YS110_RS20245 PF00905 Penicillin binding protein transpeptidase domain YS110_RS20255 PF13689 YfiR/HmsC-like YS110_RS20260 PF17152 Periplasmic sensor domain YS110_RS20260 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS20270 PF01070 FMN-dependent dehydrogenase YS110_RS20275 PF00817 impB/mucB/samB family YS110_RS20275 PF11799 impB/mucB/samB family C-terminal domain YS110_RS20285 PF08447 PAS fold YS110_RS20285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS20290 PF08447 PAS fold YS110_RS20290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS20305 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term YS110_RS20305 PF14489 QueF-like protein YS110_RS20310 PF03169 OPT oligopeptide transporter protein YS110_RS20320 PF03883 Peroxide stress protein YaaA YS110_RS20325 PF12111 Polyribonucleotide phosphorylase C terminal YS110_RS20325 PF10150 Ribonuclease E/G family YS110_RS20325 PF00575 S1 RNA binding domain YS110_RS20330 PF00849 RNA pseudouridylate synthase YS110_RS20330 PF01479 S4 domain YS110_RS20335 PF13419 Haloacid dehalogenase-like hydrolase YS110_RS20345 PF06965 Na+/H+ antiporter 1 YS110_RS20345 PF01343 Peptidase family S49 YS110_RS20350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_RS20355 PF02545 Maf-like protein YS110_RS20360 PF02620 Large ribosomal RNA subunit accumulation protein YceD YS110_RS20365 PF01783 Ribosomal L32p protein family YS110_RS20370 PF02504 Fatty acid synthesis protein YS110_RS20375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal YS110_RS20375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YS110_RS20380 PF00698 Acyl transferase domain YS110_RS20390 PF00550 Phosphopantetheine attachment site YS110_RS20395 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_RS20395 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_RS20405 PF04542 Sigma-70 region 2 YS110_RS20405 PF08281 Sigma-70, region 4 YS110_RS20410 PF03873 Anti sigma-E protein RseA, C-terminal domain YS110_RS20410 PF03872 Anti sigma-E protein RseA, N-terminal domain YS110_RS20415 PF13180 PDZ domain YS110_RS20420 PF02702 Osmosensitive K+ channel His kinase sensor domain YS110_RS20420 PF13493 Domain of unknown function (DUF4118) YS110_RS20420 PF13492 GAF domain YS110_RS20420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS20420 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS20425 PF00072 Response regulator receiver domain YS110_RS20425 PF00486 Transcriptional regulatory protein, C terminal YS110_RS20445 PF03144 Elongation factor Tu domain 2 YS110_RS20445 PF00679 Elongation factor G C-terminus YS110_RS20445 PF00009 Elongation factor Tu GTP binding domain YS110_RS20445 PF06421 GTP-binding protein LepA C-terminus YS110_RS20450 PF10502 Signal peptidase, peptidase S26 YS110_RS20460 PF14622 Ribonuclease-III-like YS110_RS20460 PF00035 Double-stranded RNA binding motif YS110_RS20465 PF01926 50S ribosome-binding GTPase YS110_RS20465 PF07650 KH domain YS110_RS20470 PF11967 Recombination protein O N terminal YS110_RS20470 PF02565 Recombination protein O C terminal YS110_RS20475 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ YS110_RS20480 PF01648 4'-phosphopantetheinyl transferase superfamily YS110_RS20485 PF00933 Glycosyl hydrolase family 3 N terminal domain YS110_RS20515 PF00394 Multicopper oxidase YS110_RS20515 PF07731 Multicopper oxidase YS110_RS20515 PF07732 Multicopper oxidase YS110_RS20535 PF05199 GMC oxidoreductase YS110_RS20535 PF00732 GMC oxidoreductase YS110_RS20550 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS20550 PF00360 Phytochrome region YS110_RS20550 PF00563 EAL domain YS110_RS20550 PF01590 GAF domain YS110_RS20555 PF01336 OB-fold nucleic acid binding domain YS110_RS20555 PF00152 tRNA synthetases class II (D, K and N) YS110_RS20575 PF02397 Bacterial sugar transferase YS110_RS20590 PF02325 YGGT family YS110_RS20595 PF00576 HIUase/Transthyretin family YS110_RS20620 PF07694 5TMR of 5TMR-LYT YS110_RS20620 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS20640 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase YS110_RS20640 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YS110_RS20645 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain YS110_RS20645 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase YS110_RS20645 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS20645 PF01799 [2Fe-2S] binding domain YS110_RS20650 PF00005 ABC transporter YS110_RS20655 PF02653 Branched-chain amino acid transport system / permease component YS110_RS20665 PF02608 ABC transporter substrate-binding protein PnrA-like YS110_RS20670 PF02608 ABC transporter substrate-binding protein PnrA-like YS110_RS20675 PF01804 Penicillin amidase YS110_RS20680 PF00962 Adenosine/AMP deaminase YS110_RS20690 PF01230 HIT domain YS110_RS20695 PF01979 Amidohydrolase family YS110_RS20700 PF00692 dUTPase YS110_RS20705 PF02423 Ornithine cyclodeaminase/mu-crystallin family YS110_RS20710 PF01470 Pyroglutamyl peptidase YS110_RS20715 PF04228 Putative neutral zinc metallopeptidase YS110_RS20720 PF00270 DEAD/DEAH box helicase YS110_RS20720 PF00271 Helicase conserved C-terminal domain YS110_RS20780 PF12679 ABC-2 family transporter protein YS110_RS20785 PF00005 ABC transporter YS110_RS20790 PF05048 Periplasmic copper-binding protein (NosD) YS110_RS20795 PF04205 FMN-binding domain YS110_RS20795 PF12801 4Fe-4S binding domain YS110_RS20800 PF18793 Nitrous oxide reductase propeller repeat 2 YS110_RS20800 PF18764 Nitrous oxide reductase propeller repeat YS110_RS20800 PF13473 Cupredoxin-like domain YS110_RS20825 PF00149 Calcineurin-like phosphoesterase YS110_RS20830 PF00571 CBS domain YS110_RS20830 PF03471 Transporter associated domain YS110_RS20830 PF01595 Cyclin M transmembrane N-terminal domain YS110_RS20835 PF00816 H-NS histone family YS110_RS20840 PF00330 Aconitase family (aconitate hydratase) YS110_RS20840 PF00694 Aconitase C-terminal domain YS110_RS20845 PF01494 FAD binding domain YS110_RS20865 PF03692 Putative zinc- or iron-chelating domain YS110_RS20875 PF02421 Ferrous iron transport protein B YS110_RS20875 PF17910 FeoB cytosolic helical domain YS110_RS20875 PF07664 Ferrous iron transport protein B C terminus YS110_RS20875 PF04023 FeoA domain YS110_RS20875 PF07670 Nucleoside recognition YS110_RS20885 PF10415 Fumarase C C-terminus YS110_RS20885 PF00206 Lyase YS110_RS20890 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YS110_RS20890 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YS110_RS20895 PF00202 Aminotransferase class-III YS110_RS20905 PF01649 Ribosomal protein S20 YS110_RS20910 PF03023 Lipid II flippase MurJ YS110_RS20915 PF13369 Transglutaminase-like superfamily YS110_RS20920 PF00582 Universal stress protein family YS110_RS20925 PF01965 DJ-1/PfpI family YS110_RS20940 PF02769 AIR synthase related protein, C-terminal domain YS110_RS20940 PF00586 AIR synthase related protein, N-terminal domain YS110_RS20945 PF08299 Bacterial dnaA protein helix-turn-helix YS110_RS20945 PF00308 Bacterial dnaA protein YS110_RS20945 PF11638 DnaA N-terminal domain YS110_RS20955 PF01743 Poly A polymerase head domain YS110_RS20955 PF12626 Polymerase A arginine-rich C-terminus YS110_RS20955 PF12627 Probable RNA and SrmB- binding site of polymerase A YS110_RS20960 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) YS110_RS20965 PF00535 Glycosyl transferase family 2 YS110_RS20970 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase YS110_RS20990 PF03401 Tripartite tricarboxylate transporter family receptor YS110_RS20995 PF00111 2Fe-2S iron-sulfur cluster binding domain YS110_RS20995 PF00175 Oxidoreductase NAD-binding domain YS110_RS20995 PF00970 Oxidoreductase FAD-binding domain YS110_RS21005 PF00459 Inositol monophosphatase family YS110_RS21015 PF00588 SpoU rRNA Methylase family YS110_RS21020 PF00132 Bacterial transferase hexapeptide (six repeats) YS110_RS21030 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS21030 PF00107 Zinc-binding dehydrogenase YS110_RS21035 PF01740 STAS domain YS110_RS21035 PF00916 Sulfate permease family YS110_RS21040 PF00994 Probable molybdopterin binding domain YS110_RS21045 PF04751 Protein of unknown function (DUF615) YS110_RS21050 PF01523 Putative modulator of DNA gyrase YS110_RS21060 PF01734 Patatin-like phospholipase YS110_RS21070 PF00180 Isocitrate/isopropylmalate dehydrogenase YS110_RS21080 PF03707 Bacterial signalling protein N terminal repeat YS110_RS21080 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS21080 PF00563 EAL domain YS110_RS21090 PF01165 Ribosomal protein S21 YS110_RS21095 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS21110 PF14824 Sirohaem biosynthesis protein central YS110_RS21110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases YS110_RS21110 PF10414 Sirohaem synthase dimerisation region YS110_RS21115 PF02885 Glycosyl transferase family, helical bundle domain YS110_RS21115 PF00591 Glycosyl transferase family, a/b domain YS110_RS21120 PF00005 ABC transporter YS110_RS21125 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS21135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain YS110_RS21135 PF00384 Molybdopterin oxidoreductase YS110_RS21135 PF01568 Molydopterin dinucleotide binding domain YS110_RS21140 PF08447 PAS fold YS110_RS21140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS21145 PF00571 CBS domain YS110_RS21145 PF01380 SIS domain YS110_RS21150 PF00814 Glycoprotease family YS110_RS21160 PF13458 Periplasmic binding protein YS110_RS21165 PF03601 Conserved hypothetical protein 698 YS110_RS21170 PF03466 LysR substrate binding domain YS110_RS21170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS21180 PF00005 ABC transporter YS110_RS21200 PF00593 TonB dependent receptor YS110_RS21200 PF07715 TonB-dependent Receptor Plug Domain YS110_RS21210 PF08281 Sigma-70, region 4 YS110_RS21210 PF04542 Sigma-70 region 2 YS110_RS21215 PF13406 Transglycosylase SLT domain YS110_RS21220 PF01841 Transglutaminase-like superfamily YS110_RS21220 PF11992 Domain of unknown function (DUF3488) YS110_RS21220 PF13559 Domain of unknown function (DUF4129) YS110_RS21230 PF07726 ATPase family associated with various cellular activities (AAA) YS110_RS21230 PF17863 AAA lid domain YS110_RS21235 PF00850 Histone deacetylase domain YS110_RS21240 PF00378 Enoyl-CoA hydratase/isomerase YS110_RS21245 PF12794 Mechanosensitive ion channel inner membrane domain 1 YS110_RS21245 PF12795 Mechanosensitive ion channel porin domain YS110_RS21245 PF00924 Mechanosensitive ion channel YS110_RS21250 PF01012 Electron transfer flavoprotein domain YS110_RS21255 PF01012 Electron transfer flavoprotein domain YS110_RS21255 PF00766 Electron transfer flavoprotein FAD-binding domain YS110_RS21260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain YS110_RS21260 PF12806 Acetyl-CoA dehydrogenase C-terminal like YS110_RS21260 PF02770 Acyl-CoA dehydrogenase, middle domain YS110_RS21260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain YS110_RS21275 PF07690 Major Facilitator Superfamily YS110_RS21280 PF06167 Glucose-regulated metallo-peptidase M90 YS110_RS21285 PF00149 Calcineurin-like phosphoesterase YS110_RS21290 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YS110_RS21295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YS110_RS21310 PF09190 DALR domain YS110_RS21310 PF01406 tRNA synthetases class I (C) catalytic domain YS110_RS21315 PF06029 AlkA N-terminal domain YS110_RS21315 PF00730 HhH-GPD superfamily base excision DNA repair protein YS110_RS21315 PF12833 Helix-turn-helix domain YS110_RS21315 PF02805 Metal binding domain of Ada YS110_RS21320 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YS110_RS21325 PF01171 PP-loop family YS110_RS21325 PF09179 TilS substrate binding domain YS110_RS21330 PF13840 ACT domain YS110_RS21330 PF01842 ACT domain YS110_RS21330 PF00696 Amino acid kinase family YS110_RS21345 PF13460 NAD(P)H-binding YS110_RS21355 PF01479 S4 domain YS110_RS21360 PF00158 Sigma-54 interaction domain YS110_RS21360 PF00072 Response regulator receiver domain YS110_RS21360 PF02954 Bacterial regulatory protein, Fis family YS110_RS21370 PF00005 ABC transporter YS110_RS21370 PF12399 Branched-chain amino acid ATP-binding cassette transporter YS110_RS21375 PF00005 ABC transporter YS110_RS21385 PF02653 Branched-chain amino acid transport system / permease component YS110_RS21385 PF11862 Domain of unknown function (DUF3382) YS110_RS21390 PF10605 3HB-oligomer hydrolase (3HBOH) YS110_RS21400 PF13654 AAA domain YS110_RS21400 PF05362 Lon protease (S16) C-terminal proteolytic domain YS110_RS21405 PF00762 Ferrochelatase YS110_RS21425 PF01593 Flavin containing amine oxidoreductase YS110_RS21440 PF00664 ABC transporter transmembrane region YS110_RS21440 PF00005 ABC transporter YS110_RS21440 PF08021 Siderophore-interacting FAD-binding domain YS110_RS21440 PF04954 Siderophore-interacting protein YS110_RS21445 PF00005 ABC transporter YS110_RS21450 PF01032 FecCD transport family YS110_RS21455 PF01032 FecCD transport family YS110_RS21460 PF00005 ABC transporter YS110_RS21465 PF01497 Periplasmic binding protein YS110_RS21470 PF00593 TonB dependent receptor YS110_RS21470 PF07715 TonB-dependent Receptor Plug Domain YS110_RS21475 PF04954 Siderophore-interacting protein YS110_RS21475 PF08021 Siderophore-interacting FAD-binding domain YS110_RS21485 PF03315 Serine dehydratase beta chain YS110_RS21485 PF03313 Serine dehydratase alpha chain YS110_RS21495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion YS110_RS21500 PF00873 AcrB/AcrD/AcrF family YS110_RS21510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_RS21510 PF05698 Bacterial trigger factor protein (TF) C-terminus YS110_RS21510 PF05697 Bacterial trigger factor protein (TF) YS110_RS21515 PF00574 Clp protease YS110_RS21520 PF07724 AAA domain (Cdc48 subfamily) YS110_RS21520 PF06689 ClpX C4-type zinc finger YS110_RS21520 PF10431 C-terminal, D2-small domain, of ClpB protein YS110_RS21525 PF00004 ATPase family associated with various cellular activities (AAA) YS110_RS21525 PF05362 Lon protease (S16) C-terminal proteolytic domain YS110_RS21525 PF02190 ATP-dependent protease La (LON) substrate-binding domain YS110_RS21550 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_RS21550 PF03449 Transcription elongation factor, N-terminal YS110_RS21565 PF01863 Protein of unknown function DUF45 YS110_RS21570 PF01177 Asp/Glu/Hydantoin racemase YS110_RS21585 PF00486 Transcriptional regulatory protein, C terminal YS110_RS21585 PF00072 Response regulator receiver domain YS110_RS21600 PF01220 Dehydroquinase class II YS110_RS21610 PF00472 RF-1 domain YS110_RS21620 PF02230 Phospholipase/Carboxylesterase YS110_RS21625 PF07969 Amidohydrolase family YS110_RS21630 PF00924 Mechanosensitive ion channel YS110_RS21630 PF05552 Conserved TM helix YS110_RS21635 PF00210 Ferritin-like domain YS110_RS21640 PF00578 AhpC/TSA family YS110_RS21640 PF10417 C-terminal domain of 1-Cys peroxiredoxin YS110_RS21645 PF13192 Thioredoxin domain YS110_RS21645 PF07992 Pyridine nucleotide-disulphide oxidoreductase YS110_RS21660 PF00593 TonB dependent receptor YS110_RS21660 PF07660 Secretin and TonB N terminus short domain YS110_RS21660 PF07715 TonB-dependent Receptor Plug Domain YS110_RS21670 PF02661 Fic/DOC family YS110_RS21685 PF03466 LysR substrate binding domain YS110_RS21685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family YS110_RS21690 PF07690 Major Facilitator Superfamily YS110_RS21705 PF00158 Sigma-54 interaction domain YS110_RS21705 PF00072 Response regulator receiver domain YS110_RS21705 PF02954 Bacterial regulatory protein, Fis family YS110_RS21710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS21710 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS21715 PF03976 Polyphosphate kinase 2 (PPK2) YS110_RS21725 PF00005 ABC transporter YS110_RS21730 PF01032 FecCD transport family YS110_RS21735 PF01497 Periplasmic binding protein YS110_RS21750 PF07715 TonB-dependent Receptor Plug Domain YS110_RS21750 PF00593 TonB dependent receptor YS110_RS21780 PF00873 AcrB/AcrD/AcrF family YS110_RS21800 PF01758 Sodium Bile acid symporter family YS110_RS21805 PF02371 Transposase IS116/IS110/IS902 family YS110_RS21805 PF01548 Transposase YS110_RS21810 PF03618 Kinase/pyrophosphorylase YS110_RS21815 PF00391 PEP-utilising enzyme, mobile domain YS110_RS21815 PF02896 PEP-utilising enzyme, TIM barrel domain YS110_RS21815 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain YS110_RS21825 PF00474 Sodium:solute symporter family YS110_RS21835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase YS110_RS21845 PF02515 CoA-transferase family III YS110_RS21850 PF07715 TonB-dependent Receptor Plug Domain YS110_RS21850 PF07660 Secretin and TonB N terminus short domain YS110_RS21850 PF00593 TonB dependent receptor YS110_RS21855 PF01381 Helix-turn-helix YS110_RS21870 PF08281 Sigma-70, region 4 YS110_RS21870 PF04542 Sigma-70 region 2 YS110_RS21890 PF02424 ApbE family YS110_RS21895 PF00667 FAD binding domain YS110_RS21895 PF00258 Flavodoxin YS110_RS21895 PF00175 Oxidoreductase NAD-binding domain YS110_RS21900 PF07715 TonB-dependent Receptor Plug Domain YS110_RS21900 PF00593 TonB dependent receptor YS110_RS21905 PF13411 MerR HTH family regulatory protein YS110_RS21915 PF02558 Ketopantoate reductase PanE/ApbA YS110_RS21915 PF08546 Ketopantoate reductase PanE/ApbA C terminal YS110_RS21920 PF13302 Acetyltransferase (GNAT) domain YS110_RS21925 PF03352 Methyladenine glycosylase YS110_RS21935 PF04546 Sigma-70, non-essential region YS110_RS21935 PF00140 Sigma-70 factor, region 1.2 YS110_RS21935 PF04542 Sigma-70 region 2 YS110_RS21935 PF04539 Sigma-70 region 3 YS110_RS21935 PF04545 Sigma-70, region 4 YS110_RS21935 PF03979 Sigma-70 factor, region 1.1 YS110_RS21940 PF10410 DnaB-helicase binding domain of primase YS110_RS21940 PF13662 Toprim domain YS110_RS21940 PF01807 CHC2 zinc finger YS110_RS21940 PF08278 DNA primase DnaG DnaB-binding YS110_RS21940 PF08275 DNA primase catalytic core, N-terminal domain YS110_RS21945 PF00501 AMP-binding enzyme YS110_RS21945 PF13193 AMP-binding enzyme C-terminal domain YS110_RS21990 PF00990 Diguanylate cyclase, GGDEF domain YS110_RS21995 PF14765 Polyketide synthase dehydratase YS110_RS21995 PF00698 Acyl transferase domain YS110_RS21995 PF08240 Alcohol dehydrogenase GroES-like domain YS110_RS21995 PF16197 Ketoacyl-synthetase C-terminal extension YS110_RS21995 PF08659 KR domain YS110_RS21995 PF00550 Phosphopantetheine attachment site YS110_RS21995 PF02801 Beta-ketoacyl synthase, C-terminal domain YS110_RS21995 PF00109 Beta-ketoacyl synthase, N-terminal domain YS110_RS22000 PF01975 Survival protein SurE YS110_RS22010 PF01476 LysM domain YS110_RS22010 PF01551 Peptidase family M23 YS110_RS22015 PF00849 RNA pseudouridylate synthase YS110_RS22015 PF01479 S4 domain YS110_RS22025 PF00849 RNA pseudouridylate synthase YS110_RS22025 PF01479 S4 domain YS110_RS22030 PF00334 Nucleoside diphosphate kinase YS110_RS22035 PF04055 Radical SAM superfamily YS110_RS22050 PF04551 GcpE protein YS110_RS22055 PF03129 Anticodon binding domain YS110_RS22055 PF13393 Histidyl-tRNA synthetase YS110_RS22065 PF13360 PQQ-like domain YS110_RS22070 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal YS110_RS22070 PF01926 50S ribosome-binding GTPase YS110_RS22075 PF17209 Hfq protein YS110_RS22080 PF16360 GTP-binding GTPase Middle Region YS110_RS22080 PF13167 GTP-binding GTPase N-terminal YS110_RS22080 PF01926 50S ribosome-binding GTPase YS110_RS22085 PF01145 SPFH domain / Band 7 family YS110_RS22085 PF12221 Bacterial membrane protein N terminal YS110_RS22090 PF01145 SPFH domain / Band 7 family YS110_RS22100 PF13393 Histidyl-tRNA synthetase YS110_RS22105 PF00709 Adenylosuccinate synthetase YS110_RS22140 PF01479 S4 domain YS110_RS22140 PF00849 RNA pseudouridylate synthase YS110_RS22170 PF03951 Glutamine synthetase, beta-Grasp domain YS110_RS22170 PF00120 Glutamine synthetase, catalytic domain YS110_RS22180 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS22180 PF00989 PAS fold YS110_RS22180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS22185 PF00072 Response regulator receiver domain YS110_RS22185 PF00158 Sigma-54 interaction domain YS110_RS22185 PF02954 Bacterial regulatory protein, Fis family YS110_RS22190 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase YS110_RS22195 PF03372 Endonuclease/Exonuclease/phosphatase family YS110_RS22210 PF00986 DNA gyrase B subunit, carboxyl terminus YS110_RS22210 PF01751 Toprim domain YS110_RS22210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS22210 PF00204 DNA gyrase B YS110_RS22215 PF00521 DNA gyrase/topoisomerase IV, subunit A YS110_RS22220 PF00672 HAMP domain YS110_RS22220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS22220 PF02203 Tar ligand binding domain homologue YS110_RS22225 PF00672 HAMP domain YS110_RS22225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS22225 PF02203 Tar ligand binding domain homologue YS110_RS22235 PF03772 Competence protein YS110_RS22235 PF00753 Metallo-beta-lactamase superfamily YS110_RS22245 PF01272 Transcription elongation factor, GreA/GreB, C-term YS110_RS22245 PF14760 Rnk N-terminus YS110_RS22250 PF08019 Phosphoethanolamine transferase EptA/EptB YS110_RS22250 PF00884 Sulfatase YS110_RS22255 PF00756 Putative esterase YS110_RS22260 PF11791 Aconitate B N-terminal domain YS110_RS22260 PF06434 Aconitate hydratase 2 N-terminus YS110_RS22260 PF00330 Aconitase family (aconitate hydratase) YS110_RS22280 PF00056 lactate/malate dehydrogenase, NAD binding domain YS110_RS22280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain YS110_RS22285 PF00392 Bacterial regulatory proteins, gntR family YS110_RS22285 PF07702 UTRA domain YS110_RS22300 PF00890 FAD binding domain YS110_RS22300 PF02910 Fumarate reductase flavoprotein C-term YS110_RS22305 PF13085 2Fe-2S iron-sulfur cluster binding domain YS110_RS22310 PF03937 Flavinator of succinate dehydrogenase YS110_RS22315 PF00285 Citrate synthase, C-terminal domain YS110_RS22325 PF00196 Bacterial regulatory proteins, luxR family YS110_RS22325 PF03472 Autoinducer binding domain YS110_RS22330 PF03472 Autoinducer binding domain YS110_RS22330 PF00196 Bacterial regulatory proteins, luxR family YS110_RS22340 PF00765 Autoinducer synthase YS110_RS22355 PF18807 Tripartite Tc toxins repeat YS110_RS22355 PF05785 Rho-activating domain of cytotoxic necrotizing factor YS110_RS22370 PF05593 RHS Repeat YS110_RS22395 PF03576 Peptidase family S58 YS110_RS22420 PF00403 Heavy-metal-associated domain YS110_RS22425 PF09278 MerR, DNA binding YS110_RS22425 PF00376 MerR family regulatory protein YS110_RS22445 PF02541 Ppx/GppA phosphatase family YS110_RS22455 PF03976 Polyphosphate kinase 2 (PPK2) YS110_RS22460 PF12849 PBP superfamily domain YS110_RS22465 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS22470 PF00528 Binding-protein-dependent transport system inner membrane component YS110_RS22475 PF00005 ABC transporter YS110_RS22480 PF01895 PhoU domain YS110_RS22485 PF00072 Response regulator receiver domain YS110_RS22485 PF00486 Transcriptional regulatory protein, C terminal YS110_RS22490 PF00989 PAS fold YS110_RS22490 PF00512 His Kinase A (phospho-acceptor) domain YS110_RS22490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YS110_RS22490 PF11808 Phosphate regulon sensor protein PhoR YS110_RS22495 PF01548 Transposase YS110_RS22495 PF02371 Transposase IS116/IS110/IS902 family YS110_RS22500 PF03524 Conjugal transfer protein YS110_RS22505 PF03743 Bacterial conjugation TrbI-like protein YS110_RS22515 PF13614 AAA domain YS110_RS22520 PF02195 ParB-like nuclease domain YS110_RS22520 PF17762 HTH domain found in ParB protein YS110_RS22530 PF10134 Replication initiator protein A YS110_RS22615 PF02534 Type IV secretory system Conjugative DNA transfer YS110_RS22635 PF00565 Staphylococcal nuclease homologue YS110_RS22705 PF00691 OmpA family YS110_RS22710 PF01464 Transglycosylase SLT domain YS110_RS22715 PF00795 Carbon-nitrogen hydrolase YS110_RS22720 PF01131 DNA topoisomerase YS110_RS22720 PF01751 Toprim domain YS110_RS22730 PF10502 Signal peptidase, peptidase S26 YS110_RS22735 PF00436 Single-strand binding protein family YS110_RS22740 PF02534 Type IV secretory system Conjugative DNA transfer YS110_RS22770 PF16793 RepB DNA-primase from phage plasmid YS110_RS22770 PF03389 MobA/MobL family YS110_RS22775 PF00437 Type II/IV secretion system protein YS110_RS22780 PF04956 TrbC/VIRB2 family YS110_RS22785 PF05101 Type IV secretory pathway, VirB3-like protein YS110_RS22790 PF03135 CagE, TrbE, VirB family, component of type IV transporter system YS110_RS22810 PF04335 VirB8 protein YS110_RS22835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain YS110_RS22835 PF02203 Tar ligand binding domain homologue YS110_RS22835 PF00672 HAMP domain YS110_RS22850 PF05736 OprF membrane domain YS110_RS22850 PF00691 OmpA family