RU84_RS00005 SM00382 ATPases associated with a variety of cellular activities RU84_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RU84_RS00010 SM00480 DNA polymerase III beta subunit RU84_RS00020 SM00387 Histidine kinase-like ATPases RU84_RS00020 SM00433 TopoisomeraseII RU84_RS00035 SM00382 ATPases associated with a variety of cellular activities RU84_RS00185 SM00271 DnaJ molecular chaperone homology domain RU84_RS00225 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS00230 SM00829 Enoylreductase RU84_RS00250 SM00478 endonuclease III RU84_RS00250 SM00525 RU84_RS00250 RU84_RS00280 SM00382 ATPases associated with a variety of cellular activities RU84_RS00305 SM01130 RU84_RS00305 RU84_RS00335 SM00346 helix_turn_helix isocitrate lyase regulation RU84_RS00365 SM00833 Cobalamin synthesis protein cobW C-terminal domain RU84_RS00375 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS00375 SM00866 RU84_RS00375 RU84_RS00490 SM00450 Rhodanese Homology Domain RU84_RS00520 SM00387 Histidine kinase-like ATPases RU84_RS00520 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS00525 SM00448 cheY-homologous receiver domain RU84_RS00525 SM00862 Transcriptional regulatory protein, C terminal RU84_RS00580 SM00257 Lysin motif RU84_RS00615 SM00387 Histidine kinase-like ATPases RU84_RS00615 SM00433 TopoisomeraseII RU84_RS00680 SM00267 diguanylate cyclase RU84_RS00745 SM00842 Cell division protein FtsA RU84_RS00750 SM00864 Tubulin/FtsZ family, GTPase domain RU84_RS00750 SM00865 Tubulin/FtsZ family, C-terminal domain RU84_RS00795 SM00849 Metallo-beta-lactamase superfamily RU84_RS00805 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_RS00805 SM01240 RU84_RS00805 RU84_RS00830 SM00937 RU84_RS00830 RU84_RS00835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_RS00875 SM00344 helix_turn_helix ASNC type RU84_RS00890 SM00421 helix_turn_helix, Lux Regulon RU84_RS00890 SM00448 cheY-homologous receiver domain RU84_RS00900 SM00387 Histidine kinase-like ATPases RU84_RS00900 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS00900 SM00448 cheY-homologous receiver domain RU84_RS00930 SM00267 diguanylate cyclase RU84_RS00945 SM00829 Enoylreductase RU84_RS00990 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS01000 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS01080 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS01140 SM00477 DNA/RNA non-specific endonuclease RU84_RS01140 SM00892 DNA/RNA non-specific endonuclease RU84_RS01160 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS01180 SM00357 Cold shock protein domain RU84_RS01195 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS01205 SM00474 3'-5' exonuclease RU84_RS01250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_RS01250 SM00387 Histidine kinase-like ATPases RU84_RS01250 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS01255 SM00448 cheY-homologous receiver domain RU84_RS01255 SM00862 Transcriptional regulatory protein, C terminal RU84_RS01260 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS01260 SM00732 Likely ribonuclease with RNase H fold. RU84_RS01265 SM00947 Carbonic anhydrase RU84_RS01280 SM00382 ATPases associated with a variety of cellular activities RU84_RS01285 SM00671 Sel1-like repeats. RU84_RS01435 SM00842 Cell division protein FtsA RU84_RS01455 SM00965 Secretin and TonB N terminus short domain RU84_RS01535 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU84_RS01535 SM00954 Region found in RelA / SpoT proteins RU84_RS01540 SM01409 RU84_RS01540 RU84_RS01545 SM00072 Guanylate kinase homologues. RU84_RS01730 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RU84_RS01835 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_RS01875 SM00861 Transketolase, pyrimidine binding domain RU84_RS01885 SM00487 DEAD-like helicases superfamily RU84_RS01885 SM00490 helicase superfamily c-terminal domain RU84_RS01895 SM00382 ATPases associated with a variety of cellular activities RU84_RS01940 SM00487 DEAD-like helicases superfamily RU84_RS01940 SM00490 helicase superfamily c-terminal domain RU84_RS01955 SM00563 Phosphate acyltransferases RU84_RS02005 SM01403 RU84_RS02005 RU84_RS02025 SM01382 RU84_RS02025 RU84_RS02025 SM01383 RU84_RS02025 RU84_RS02040 SM00322 K homology RNA-binding domain RU84_RS02060 SM01374 RU84_RS02060 RU84_RS02065 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RU84_RS02130 SM00363 S4 RNA-binding domain RU84_RS02130 SM01390 RU84_RS02130 RU84_RS02135 SM00662 RNA polymerases D RU84_RS02195 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS02195 SM00955 RU84_RS02195 RU84_RS02245 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS02295 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS02325 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RU84_RS02415 SM00878 Biotin carboxylase C-terminal domain RU84_RS02440 SM00849 Metallo-beta-lactamase superfamily RU84_RS02495 SM00650 Ribosomal RNA adenine dimethylases RU84_RS02525 SM00563 Phosphate acyltransferases RU84_RS02530 SM00155 Phospholipase D. Active site motifs. RU84_RS02545 SM00267 diguanylate cyclase RU84_RS02620 SM00450 Rhodanese Homology Domain RU84_RS02645 SM00481 DNA polymerase alpha chain like domain RU84_RS02675 SM01323 RU84_RS02675 RU84_RS02765 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS02895 SM00028 Tetratricopeptide repeats RU84_RS02920 SM00387 Histidine kinase-like ATPases RU84_RS02920 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS03040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_RS03040 SM00387 Histidine kinase-like ATPases RU84_RS03040 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS03045 SM00448 cheY-homologous receiver domain RU84_RS03045 SM00862 Transcriptional regulatory protein, C terminal RU84_RS03105 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS03135 SM00849 Metallo-beta-lactamase superfamily RU84_RS03145 SM00957 SecA DEAD-like domain RU84_RS03145 SM00958 SecA preprotein cross-linking domain RU84_RS03195 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS03210 SM00564 beta-propeller repeat RU84_RS03275 SM00838 Elongation factor G C-terminus RU84_RS03295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RU84_RS03295 SM01232 RU84_RS03295 RU84_RS03320 SM00671 Sel1-like repeats. RU84_RS03375 SM00448 cheY-homologous receiver domain RU84_RS03380 SM00448 cheY-homologous receiver domain RU84_RS03385 SM00260 Two component signalling adaptor domain RU84_RS03390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RU84_RS03395 SM00073 Histidine Phosphotransfer domain RU84_RS03395 SM00260 Two component signalling adaptor domain RU84_RS03395 SM00387 Histidine kinase-like ATPases RU84_RS03395 SM00448 cheY-homologous receiver domain RU84_RS03395 SM01231 RU84_RS03395 RU84_RS03405 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS03550 SM00845 GatB domain RU84_RS03585 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS03620 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS03640 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS03645 SM00829 Enoylreductase RU84_RS03680 SM00244 prohibitin homologues RU84_RS03695 SM00563 Phosphate acyltransferases RU84_RS03715 SM00448 cheY-homologous receiver domain RU84_RS03715 SM00862 Transcriptional regulatory protein, C terminal RU84_RS03720 SM00387 Histidine kinase-like ATPases RU84_RS03720 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS03765 SM00822 RU84_RS03765 RU84_RS03800 SM00014 Acid phosphatase homologues RU84_RS03905 SM00450 Rhodanese Homology Domain RU84_RS03940 SM00861 Transketolase, pyrimidine binding domain RU84_RS03960 SM00881 CoA binding domain RU84_RS03995 SM00854 Bacterial capsule synthesis protein PGA_cap RU84_RS04035 SM00851 MGS-like domain RU84_RS04035 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RU84_RS04040 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RU84_RS04055 SM01103 RU84_RS04055 RU84_RS04065 SM00382 ATPases associated with a variety of cellular activities RU84_RS04140 SM00046 Diacylglycerol kinase catalytic domain (presumed) RU84_RS04155 SM00883 Chaperonin 10 Kd subunit RU84_RS04170 SM00849 Metallo-beta-lactamase superfamily RU84_RS04320 SM00978 RU84_RS04320 RU84_RS04325 SM00382 ATPases associated with a variety of cellular activities RU84_RS04360 SM00893 Electron transfer flavoprotein domain RU84_RS04365 SM00893 Electron transfer flavoprotein domain RU84_RS04370 SM00434 DNA Topoisomerase IV RU84_RS04440 SM00382 ATPases associated with a variety of cellular activities RU84_RS04580 SM00382 ATPases associated with a variety of cellular activities RU84_RS04585 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_RS04590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU84_RS04595 SM01211 RU84_RS04595 RU84_RS04670 SM00382 ATPases associated with a variety of cellular activities RU84_RS04720 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_RS04730 SM00838 Elongation factor G C-terminus RU84_RS04745 SM00358 Double-stranded RNA binding motif RU84_RS04745 SM00535 Ribonuclease III family RU84_RS04820 SM00267 diguanylate cyclase RU84_RS04830 SM00487 DEAD-like helicases superfamily RU84_RS04830 SM00490 helicase superfamily c-terminal domain RU84_RS04845 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU84_RS04865 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RU84_RS04965 SM01329 RU84_RS04965 RU84_RS05015 SM00880 RU84_RS05015 RU84_RS05015 SM01118 RU84_RS05015 RU84_RS05045 SM00487 DEAD-like helicases superfamily RU84_RS05045 SM00490 helicase superfamily c-terminal domain RU84_RS05100 SM00344 helix_turn_helix ASNC type RU84_RS05130 SM00382 ATPases associated with a variety of cellular activities RU84_RS05175 SM00936 Penicillin-binding protein 5, C-terminal domain RU84_RS05195 SM00257 Lysin motif RU84_RS05230 SM00052 Putative diguanylate phosphodiesterase RU84_RS05245 SM00841 Elongation factor P, C-terminal RU84_RS05245 SM01185 RU84_RS05245 RU84_RS05265 SM00829 Enoylreductase RU84_RS05275 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS05330 SM00382 ATPases associated with a variety of cellular activities RU84_RS05375 SM00382 ATPases associated with a variety of cellular activities RU84_RS05380 SM00382 ATPases associated with a variety of cellular activities RU84_RS05435 SM01092 CO dehydrogenase flavoprotein C-terminal domain RU84_RS05440 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RU84_RS05450 SM00463 Small MutS-related domain RU84_RS05490 SM01230 RU84_RS05490 RU84_RS05545 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_RS05555 SM00919 Malic enzyme, NAD binding domain RU84_RS05555 SM01274 RU84_RS05555 RU84_RS05560 SM00052 Putative diguanylate phosphodiesterase RU84_RS05560 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RU84_RS05560 SM00091 PAS domain RU84_RS05560 SM00267 diguanylate cyclase RU84_RS05575 SM00996 S-adenosyl-L-homocysteine hydrolase RU84_RS05575 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RU84_RS05595 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS05645 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS05695 SM00382 ATPases associated with a variety of cellular activities RU84_RS05710 SM00479 RU84_RS05710 RU84_RS05745 SM00062 Bacterial periplasmic substrate-binding proteins RU84_RS05760 SM00382 ATPases associated with a variety of cellular activities RU84_RS05780 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS05805 SM00382 ATPases associated with a variety of cellular activities RU84_RS05815 SM00448 cheY-homologous receiver domain RU84_RS05815 SM00862 Transcriptional regulatory protein, C terminal RU84_RS05820 SM00387 Histidine kinase-like ATPases RU84_RS05820 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS05875 SM00830 Chorismate mutase type II RU84_RS05940 SM00357 Cold shock protein domain RU84_RS05945 SM00487 DEAD-like helicases superfamily RU84_RS05945 SM00490 helicase superfamily c-terminal domain RU84_RS05965 SM00855 Phosphoglycerate mutase family RU84_RS06045 SM00220 Serine/Threonine protein kinases, catalytic domain RU84_RS06075 SM00912 haemagglutination activity domain RU84_RS06170 SM01034 Sensors of blue-light using FAD RU84_RS06185 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS06205 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS06205 SM00895 RU84_RS06205 RU84_RS06220 SM00972 Spore Coat Protein U domain RU84_RS06250 SM00972 Spore Coat Protein U domain RU84_RS06315 SM00095 Transthyretin RU84_RS06325 SM00448 cheY-homologous receiver domain RU84_RS06325 SM00862 Transcriptional regulatory protein, C terminal RU84_RS06330 SM00387 Histidine kinase-like ATPases RU84_RS06330 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS06370 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS06375 SM00448 cheY-homologous receiver domain RU84_RS06375 SM00862 Transcriptional regulatory protein, C terminal RU84_RS06445 SM00849 Metallo-beta-lactamase superfamily RU84_RS06455 SM00382 ATPases associated with a variety of cellular activities RU84_RS06455 SM00930 RU84_RS06455 RU84_RS06465 SM01209 RU84_RS06465 RU84_RS06465 SM01210 RU84_RS06465 RU84_RS06470 SM00798 AICARFT/IMPCHase bienzyme RU84_RS06470 SM00851 MGS-like domain RU84_RS06495 SM01228 RU84_RS06495 RU84_RS06515 SM00460 Transglutaminase/protease-like homologues RU84_RS06525 SM01005 Alanine racemase, C-terminal domain RU84_RS06640 SM00937 RU84_RS06640 RU84_RS06650 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS06655 SM00822 RU84_RS06655 RU84_RS06670 SM00903 Flavin reductase like domain RU84_RS06685 SM00905 Dihydroneopterin aldolase RU84_RS06710 SM00387 Histidine kinase-like ATPases RU84_RS06710 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS06715 SM00448 cheY-homologous receiver domain RU84_RS06715 SM00862 Transcriptional regulatory protein, C terminal RU84_RS06720 SM01230 RU84_RS06720 RU84_RS06800 SM00363 S4 RNA-binding domain RU84_RS06825 SM00853 MutL C terminal dimerisation domain RU84_RS06825 SM01340 RU84_RS06825 RU84_RS06890 SM00862 Transcriptional regulatory protein, C terminal RU84_RS06905 SM00382 ATPases associated with a variety of cellular activities RU84_RS06935 SM00972 Spore Coat Protein U domain RU84_RS06950 SM00972 Spore Coat Protein U domain RU84_RS06970 SM00830 Chorismate mutase type II RU84_RS06975 SM00344 helix_turn_helix ASNC type RU84_RS07060 SM00382 ATPases associated with a variety of cellular activities RU84_RS07085 SM00831 Cation transporter/ATPase, N-terminus RU84_RS07100 SM00344 helix_turn_helix ASNC type RU84_RS07130 SM00822 RU84_RS07130 RU84_RS07165 SM00382 ATPases associated with a variety of cellular activities RU84_RS07190 SM00226 Low molecular weight phosphatase family RU84_RS07245 SM01236 RU84_RS07245 RU84_RS07260 SM00878 Biotin carboxylase C-terminal domain RU84_RS07285 SM00448 cheY-homologous receiver domain RU84_RS07285 SM01012 RU84_RS07285 RU84_RS07305 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU84_RS07315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU84_RS07320 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS07335 SM00852 Probable molybdopterin binding domain RU84_RS07340 SM00852 Probable molybdopterin binding domain RU84_RS07350 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS07435 SM00382 ATPases associated with a variety of cellular activities RU84_RS07435 SM00448 cheY-homologous receiver domain RU84_RS07440 SM00091 PAS domain RU84_RS07440 SM00387 Histidine kinase-like ATPases RU84_RS07440 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS07445 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS07475 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_RS07485 SM00935 Outer membrane protein (OmpH-like) RU84_RS07520 SM00382 ATPases associated with a variety of cellular activities RU84_RS07525 SM00363 S4 RNA-binding domain RU84_RS07555 SM00344 helix_turn_helix ASNC type RU84_RS07600 SM00052 Putative diguanylate phosphodiesterase RU84_RS07600 SM00091 PAS domain RU84_RS07600 SM00267 diguanylate cyclase RU84_RS07610 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_RS07685 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_RS07710 SM00382 ATPases associated with a variety of cellular activities RU84_RS07710 SM00962 SRP54-type protein, GTPase domain RU84_RS07710 SM00963 SRP54-type protein, helical bundle domain RU84_RS07770 SM01264 RU84_RS07770 RU84_RS07810 SM00859 Semialdehyde dehydrogenase, NAD binding domain RU84_RS07825 SM00382 ATPases associated with a variety of cellular activities RU84_RS07825 SM01086 C-terminal, D2-small domain, of ClpB protein RU84_RS07890 SM01192 RU84_RS07890 RU84_RS07890 SM01193 RU84_RS07890 RU84_RS07910 SM00882 Coenzyme A transferase RU84_RS07915 SM00882 Coenzyme A transferase RU84_RS07925 SM00998 Adenylosuccinate lyase C-terminus RU84_RS07960 SM00710 Parallel beta-helix repeats RU84_RS07970 SM00564 beta-propeller repeat RU84_RS07990 SM00849 Metallo-beta-lactamase superfamily RU84_RS07995 SM00346 helix_turn_helix isocitrate lyase regulation RU84_RS08015 SM00855 Phosphoglycerate mutase family RU84_RS08035 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_RS08080 SM00903 Flavin reductase like domain RU84_RS08085 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS08115 SM00882 Coenzyme A transferase RU84_RS08120 SM00882 Coenzyme A transferase RU84_RS08135 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RU84_RS08150 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS08150 SM00895 RU84_RS08150 RU84_RS08200 SM00422 helix_turn_helix, mercury resistance RU84_RS08250 SM00822 RU84_RS08250 RU84_RS08340 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS08340 SM00866 RU84_RS08340 RU84_RS08425 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS08430 SM00829 Enoylreductase RU84_RS08445 SM00382 ATPases associated with a variety of cellular activities RU84_RS08455 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS08465 SM01400 RU84_RS08465 RU84_RS08530 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS08565 SM00822 RU84_RS08565 RU84_RS08570 SM00822 RU84_RS08570 RU84_RS08580 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS08590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_RS08590 SM00387 Histidine kinase-like ATPases RU84_RS08590 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS08595 SM00448 cheY-homologous receiver domain RU84_RS08595 SM00862 Transcriptional regulatory protein, C terminal RU84_RS08625 SM00882 Coenzyme A transferase RU84_RS08630 SM00882 Coenzyme A transferase RU84_RS08690 SM00382 ATPases associated with a variety of cellular activities RU84_RS08715 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS08715 SM00866 RU84_RS08715 RU84_RS08735 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS08760 SM00849 Metallo-beta-lactamase superfamily RU84_RS08765 SM00382 ATPases associated with a variety of cellular activities RU84_RS08775 SM00829 Enoylreductase RU84_RS08795 SM00861 Transketolase, pyrimidine binding domain RU84_RS08805 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS08820 SM00267 diguanylate cyclase RU84_RS08845 SM00341 Helicase and RNase D C-terminal RU84_RS08845 SM00474 3'-5' exonuclease RU84_RS08850 SM00493 RU84_RS08850 RU84_RS08900 SM01324 RU84_RS08900 RU84_RS08940 SM00382 ATPases associated with a variety of cellular activities RU84_RS09000 SM00855 Phosphoglycerate mutase family RU84_RS09025 SM01006 Siderophore biosynthesis protein domain RU84_RS09115 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS09125 SM00411 bacterial (prokaryotic) histone like domain RU84_RS09160 SM00271 DnaJ molecular chaperone homology domain RU84_RS09175 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RU84_RS09185 SM00487 DEAD-like helicases superfamily RU84_RS09185 SM00490 helicase superfamily c-terminal domain RU84_RS09185 SM00982 RU84_RS09185 RU84_RS09185 SM01058 CarD-like/TRCF domain RU84_RS09240 SM00382 ATPases associated with a variety of cellular activities RU84_RS09305 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS09320 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RU84_RS09330 SM00411 bacterial (prokaryotic) histone like domain RU84_RS09335 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS09360 SM00986 Uracil DNA glycosylase superfamily RU84_RS09360 SM00987 UreE urease accessory protein, C-terminal domain RU84_RS09420 SM00382 ATPases associated with a variety of cellular activities RU84_RS09435 SM00470 ParB-like nuclease domain RU84_RS09495 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. RU84_RS09505 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_RS09525 SM00382 ATPases associated with a variety of cellular activities RU84_RS09535 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS09555 SM00344 helix_turn_helix ASNC type RU84_RS09590 SM00867 YceI-like domain RU84_RS09600 SM00861 Transketolase, pyrimidine binding domain RU84_RS09635 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS09655 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS09655 SM00876 Biotin and Thiamin Synthesis associated domain RU84_RS09735 SM01236 RU84_RS09735 RU84_RS09750 SM00563 Phosphate acyltransferases RU84_RS09760 SM00344 helix_turn_helix ASNC type RU84_RS09770 SM00382 ATPases associated with a variety of cellular activities RU84_RS09785 SM00062 Bacterial periplasmic substrate-binding proteins RU84_RS09820 SM00382 ATPases associated with a variety of cellular activities RU84_RS09820 SM00930 RU84_RS09820 RU84_RS09840 SM00100 Cyclic nucleotide-monophosphate binding domain RU84_RS09840 SM00419 helix_turn_helix, cAMP Regulatory protein RU84_RS09875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RU84_RS09895 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS09920 SM00870 RU84_RS09920 RU84_RS09925 SM00481 DNA polymerase alpha chain like domain RU84_RS09975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_RS10005 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS10005 SM00895 RU84_RS10005 RU84_RS10030 SM00382 ATPases associated with a variety of cellular activities RU84_RS10035 SM00062 Bacterial periplasmic substrate-binding proteins RU84_RS10080 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS10100 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RU84_RS10160 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS10195 SM00822 RU84_RS10195 RU84_RS10205 SM00450 Rhodanese Homology Domain RU84_RS10235 SM00062 Bacterial periplasmic substrate-binding proteins RU84_RS10240 SM00062 Bacterial periplasmic substrate-binding proteins RU84_RS10245 SM00382 ATPases associated with a variety of cellular activities RU84_RS10265 SM00421 helix_turn_helix, Lux Regulon RU84_RS10265 SM00448 cheY-homologous receiver domain RU84_RS10270 SM00387 Histidine kinase-like ATPases RU84_RS10270 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS10270 SM00448 cheY-homologous receiver domain RU84_RS10280 SM00344 helix_turn_helix ASNC type RU84_RS10300 SM00384 DNA binding domain with preference for A/T rich regions RU84_RS10320 SM01060 RU84_RS10320 RU84_RS10325 SM01236 RU84_RS10325 RU84_RS10410 SM00878 Biotin carboxylase C-terminal domain RU84_RS10455 SM00882 Coenzyme A transferase RU84_RS10460 SM00882 Coenzyme A transferase RU84_RS10495 SM00346 helix_turn_helix isocitrate lyase regulation RU84_RS10515 SM00346 helix_turn_helix isocitrate lyase regulation RU84_RS10555 SM00382 ATPases associated with a variety of cellular activities RU84_RS10565 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS10565 SM00866 RU84_RS10565 RU84_RS10575 SM01005 Alanine racemase, C-terminal domain RU84_RS10585 SM00346 helix_turn_helix isocitrate lyase regulation RU84_RS10630 SM00903 Flavin reductase like domain RU84_RS10645 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS10645 SM00895 RU84_RS10645 RU84_RS10660 SM01060 RU84_RS10660 RU84_RS10795 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS10820 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS10820 SM00895 RU84_RS10820 RU84_RS10830 SM01130 RU84_RS10830 RU84_RS10840 SM00422 helix_turn_helix, mercury resistance RU84_RS10875 SM00878 Biotin carboxylase C-terminal domain RU84_RS10880 SM00796 Allophanate hydrolase subunit 1 RU84_RS10880 SM00797 Allophanate hydrolase subunit 2 RU84_RS10980 SM00422 helix_turn_helix, mercury resistance RU84_RS11015 SM00052 Putative diguanylate phosphodiesterase RU84_RS11025 SM00344 helix_turn_helix ASNC type RU84_RS11030 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RU84_RS11030 SM00534 ATPase domain of DNA mismatch repair MUTS family RU84_RS11075 SM00382 ATPases associated with a variety of cellular activities RU84_RS11085 SM00382 ATPases associated with a variety of cellular activities RU84_RS11105 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_RS11110 SM00840 RU84_RS11110 RU84_RS11180 SM00357 Cold shock protein domain RU84_RS11200 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS11250 SM00422 helix_turn_helix, mercury resistance RU84_RS11265 SM00382 ATPases associated with a variety of cellular activities RU84_RS11265 SM00989 RU84_RS11265 RU84_RS11350 SM00382 ATPases associated with a variety of cellular activities RU84_RS11350 SM00487 DEAD-like helicases superfamily RU84_RS11350 SM00490 helicase superfamily c-terminal domain RU84_RS11350 SM00847 Helicase associated domain (HA2) Add an annotation RU84_RS11430 SM00981 RU84_RS11430 RU84_RS11445 SM00382 ATPases associated with a variety of cellular activities RU84_RS11445 SM01086 C-terminal, D2-small domain, of ClpB protein RU84_RS11470 SM00100 Cyclic nucleotide-monophosphate binding domain RU84_RS11470 SM00419 helix_turn_helix, cAMP Regulatory protein RU84_RS11490 SM00788 Adenylosuccinate synthetase RU84_RS11505 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RU84_RS11510 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RU84_RS11600 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS11660 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS11660 SM00895 RU84_RS11660 RU84_RS11665 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_RS11715 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS11715 SM00895 RU84_RS11715 RU84_RS11725 SM01130 RU84_RS11725 RU84_RS11730 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RU84_RS11750 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS11800 SM00344 helix_turn_helix ASNC type RU84_RS11815 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS11815 SM00895 RU84_RS11815 RU84_RS11940 SM00487 DEAD-like helicases superfamily RU84_RS12085 SM00267 diguanylate cyclase RU84_RS12095 SM00479 RU84_RS12095 RU84_RS12115 SM00382 ATPases associated with a variety of cellular activities RU84_RS12135 SM00257 Lysin motif RU84_RS12140 SM00479 RU84_RS12140 RU84_RS12195 SM00422 helix_turn_helix, mercury resistance RU84_RS12215 SM01011 Aminopeptidase P, N-terminal domain RU84_RS12490 SM00507 HNH nucleases RU84_RS12530 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS12540 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS12605 SM00382 ATPases associated with a variety of cellular activities RU84_RS12605 SM00464 Found in ATP-dependent protease La (LON) RU84_RS12625 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RU84_RS12635 SM00478 endonuclease III RU84_RS12680 SM00988 UreE urease accessory protein, N-terminal domain RU84_RS12725 SM01091 Transporter associated domain RU84_RS12820 SM00382 ATPases associated with a variety of cellular activities RU84_RS12830 SM00947 Carbonic anhydrase RU84_RS12890 SM01018 B12 binding domain RU84_RS12895 SM00861 Transketolase, pyrimidine binding domain RU84_RS12910 SM00822 RU84_RS12910 RU84_RS13025 SM00346 helix_turn_helix isocitrate lyase regulation RU84_RS13065 SM01322 RU84_RS13065 RU84_RS13160 SM01130 RU84_RS13160 RU84_RS13215 SM00487 DEAD-like helicases superfamily RU84_RS13215 SM00490 helicase superfamily c-terminal domain RU84_RS13280 SM00487 DEAD-like helicases superfamily RU84_RS13490 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS13510 SM00382 ATPases associated with a variety of cellular activities RU84_RS13565 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS13600 SM00479 RU84_RS13600 RU84_RS13640 SM00901 RU84_RS13640 RU84_RS13680 SM01004 Delta-aminolevulinic acid dehydratase RU84_RS13725 SM00382 ATPases associated with a variety of cellular activities RU84_RS13795 SM00563 Phosphate acyltransferases RU84_RS13835 SM00843 RU84_RS13835 RU84_RS13875 SM00838 Elongation factor G C-terminus RU84_RS13875 SM00889 Elongation factor G, domain IV RU84_RS13895 SM00825 Beta-ketoacyl synthase RU84_RS13955 SM01329 RU84_RS13955 RU84_RS14125 SM00507 HNH nucleases RU84_RS14175 SM00990 RU84_RS14175 RU84_RS14220 SM00382 ATPases associated with a variety of cellular activities RU84_RS14240 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS14335 SM00363 S4 RNA-binding domain RU84_RS14345 SM00400 zinc finger RU84_RS14345 SM00493 RU84_RS14345 RU84_RS14355 SM00028 Tetratricopeptide repeats RU84_RS14390 SM01400 RU84_RS14390 RU84_RS14435 SM00257 Lysin motif RU84_RS14445 SM00822 RU84_RS14445 RU84_RS14450 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RU84_RS14485 SM00363 S4 RNA-binding domain RU84_RS14535 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_RS14535 SM00292 breast cancer carboxy-terminal domain RU84_RS14535 SM00532 Ligase N family RU84_RS14540 SM00771 ZipA, C-terminal domain (FtsZ-binding) RU84_RS14550 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS14570 SM00382 ATPases associated with a variety of cellular activities RU84_RS14570 SM00962 SRP54-type protein, GTPase domain RU84_RS14570 SM00963 SRP54-type protein, helical bundle domain RU84_RS14715 SM00357 Cold shock protein domain RU84_RS14760 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RU84_RS14760 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RU84_RS14765 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RU84_RS14790 SM00267 diguanylate cyclase RU84_RS14800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_RS14800 SM00387 Histidine kinase-like ATPases RU84_RS14800 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS14805 SM00448 cheY-homologous receiver domain RU84_RS14805 SM00862 Transcriptional regulatory protein, C terminal RU84_RS14860 SM00903 Flavin reductase like domain RU84_RS14880 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS15180 SM00331 Sigma factor PP2C-like phosphatases RU84_RS15200 SM00347 helix_turn_helix multiple antibiotic resistance protein RU84_RS15210 SM00382 ATPases associated with a variety of cellular activities RU84_RS15230 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RU84_RS15230 SM00474 3'-5' exonuclease RU84_RS15230 SM00475 5'-3' exonuclease RU84_RS15230 SM00482 DNA polymerase A domain RU84_RS15245 SM00977 TilS substrate C-terminal domain RU84_RS15265 SM00357 Cold shock protein domain RU84_RS15265 SM00382 ATPases associated with a variety of cellular activities RU84_RS15265 SM00959 Rho termination factor, N-terminal domain RU84_RS15275 SM00411 bacterial (prokaryotic) histone like domain RU84_RS15280 SM00873 B3/4 domain RU84_RS15280 SM00874 tRNA synthetase B5 domain RU84_RS15280 SM00896 Ferredoxin-fold anticodon binding domain RU84_RS15300 SM00530 Helix-turn-helix XRE-family like proteins RU84_RS15335 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RU84_RS15380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_RS15395 SM00954 Region found in RelA / SpoT proteins RU84_RS15415 SM00073 Histidine Phosphotransfer domain RU84_RS15415 SM00387 Histidine kinase-like ATPases RU84_RS15415 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS15415 SM00448 cheY-homologous receiver domain RU84_RS15455 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RU84_RS15455 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RU84_RS15515 SM00226 Low molecular weight phosphatase family RU84_RS15520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RU84_RS15530 SM00422 helix_turn_helix, mercury resistance RU84_RS15540 SM00899 RU84_RS15540 RU84_RS15590 SM00448 cheY-homologous receiver domain RU84_RS15590 SM00862 Transcriptional regulatory protein, C terminal RU84_RS15595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RU84_RS15595 SM00387 Histidine kinase-like ATPases RU84_RS15595 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS15600 SM00746 metallochaperone-like domain RU84_RS15630 SM00271 DnaJ molecular chaperone homology domain RU84_RS15720 SM01236 RU84_RS15720 RU84_RS15735 SM00052 Putative diguanylate phosphodiesterase RU84_RS15735 SM00267 diguanylate cyclase RU84_RS15780 SM00382 ATPases associated with a variety of cellular activities RU84_RS15800 SM00479 RU84_RS15800 RU84_RS15810 SM00450 Rhodanese Homology Domain RU84_RS15835 SM00564 beta-propeller repeat RU84_RS15860 SM00028 Tetratricopeptide repeats RU84_RS15870 SM00562 RU84_RS15870 RU84_RS15880 SM00014 Acid phosphatase homologues RU84_RS15890 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_RS15890 SM00245 tail specific protease RU84_RS15965 SM00382 ATPases associated with a variety of cellular activities RU84_RS15965 SM00994 ClpX C4-type zinc finger RU84_RS15965 SM01086 C-terminal, D2-small domain, of ClpB protein RU84_RS15985 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RU84_RS15990 SM00917 LeuA allosteric (dimerisation) domain RU84_RS16005 SM00671 Sel1-like repeats. RU84_RS16145 SM00360 RNA recognition motif RU84_RS16165 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RU84_RS16165 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RU84_RS16165 SM00493 RU84_RS16165 RU84_RS16180 SM00829 Enoylreductase RU84_RS16190 SM00382 ATPases associated with a variety of cellular activities RU84_RS16220 SM00859 Semialdehyde dehydrogenase, NAD binding domain RU84_RS16235 SM00870 RU84_RS16235 RU84_RS16245 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS16250 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS16265 SM01329 RU84_RS16265 RU84_RS16305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RU84_RS16345 SM00363 S4 RNA-binding domain RU84_RS16350 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS16380 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS16495 SM00849 Metallo-beta-lactamase superfamily RU84_RS16535 SM00116 Domain in cystathionine beta-synthase and other proteins. RU84_RS16535 SM01091 Transporter associated domain RU84_RS16565 SM00487 DEAD-like helicases superfamily RU84_RS16565 SM00490 helicase superfamily c-terminal domain RU84_RS16585 SM00271 DnaJ molecular chaperone homology domain RU84_RS16600 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS16600 SM00322 K homology RNA-binding domain RU84_RS16605 SM01387 RU84_RS16605 RU84_RS16615 SM00382 ATPases associated with a variety of cellular activities RU84_RS16725 SM00316 Ribosomal protein S1-like RNA-binding domain RU84_RS16785 SM00967 RNA 2'-O ribose methyltransferase substrate binding RU84_RS16795 SM00028 Tetratricopeptide repeats RU84_RS16810 SM00732 Likely ribonuclease with RNase H fold. RU84_RS16830 SM00346 helix_turn_helix isocitrate lyase regulation RU84_RS16840 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS16855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RU84_RS16855 SM00465 GIY-YIG type nucleases (URI domain) RU84_RS16890 SM00422 helix_turn_helix, mercury resistance RU84_RS16915 SM00387 Histidine kinase-like ATPases RU84_RS16955 SM00663 RNA polymerase I subunit A N-terminus RU84_RS16980 SM00649 Ribosomal protein L11/L12 RU84_RS16985 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RU84_RS16985 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RU84_RS17035 SM00240 Forkhead associated domain RU84_RS17045 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RU84_RS17055 SM00528 Domain in histone-like proteins of HNS family RU84_RS17085 SM00448 cheY-homologous receiver domain RU84_RS17085 SM00850 LytTr DNA-binding domain RU84_RS17175 SM00899 RU84_RS17175 RU84_RS17205 SM00421 helix_turn_helix, Lux Regulon RU84_RS17205 SM00448 cheY-homologous receiver domain RU84_RS17210 SM00387 Histidine kinase-like ATPases RU84_RS17210 SM00388 His Kinase A (phosphoacceptor) domain RU84_RS17215 SM00382 ATPases associated with a variety of cellular activities RU84_RS17215 SM00448 cheY-homologous receiver domain RU84_RS17220 SM00245 tail specific protease RU84_RS17285 SM00938 Nitrogen regulatory protein P-II RU84_RS17295 SM00382 ATPases associated with a variety of cellular activities RU84_RS17300 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS17305 SM01007 Class II Aldolase and Adducin N-terminal domain RU84_RS17310 SM01130 RU84_RS17310 RU84_RS17345 SM00434 DNA Topoisomerase IV RU84_RS17365 SM01091 Transporter associated domain RU84_RS17380 SM00641 Glycosyl hydrolases family 25 RU84_RS17400 SM00729 Elongator protein 3, MiaB family, Radical SAM RU84_RS17410 SM00422 helix_turn_helix, mercury resistance RU84_RS17525 SM00342 helix_turn_helix, arabinose operon control protein RU84_RS17545 SM00382 ATPases associated with a variety of cellular activities RU84_RS17595 SM00382 ATPases associated with a variety of cellular activities RU84_RS17615 SM00919 Malic enzyme, NAD binding domain RU84_RS17615 SM01274 RU84_RS17615 RU84_RS17620 SM00836 DALR anticodon binding domain RU84_RS17620 SM01016 Arginyl tRNA synthetase N terminal dom RU84_RS17735 SM00823 Phosphopantetheine attachment site RU84_RS17735 SM00824 Thioesterase RU84_RS17740 SM00823 Phosphopantetheine attachment site RU84_RS17740 SM01294 RU84_RS17740 RU84_RS17755 SM00421 helix_turn_helix, Lux Regulon RU84_RS17825 SM01005 Alanine racemase, C-terminal domain RU84_RS17835 SM00344 helix_turn_helix ASNC type RU84_RS17875 SM00825 Beta-ketoacyl synthase RU84_RS17920 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS17920 SM00895 RU84_RS17920 RU84_RS17940 SM00345 helix_turn_helix gluconate operon transcriptional repressor RU84_RS17940 SM00895 RU84_RS17940 RU84_RS17965 SM00984 UDP binding domain RU84_RS18005 SM00858 RU84_RS18005 RU84_RS18035 SM00984 UDP binding domain RU84_RS18045 SM00226 Low molecular weight phosphatase family RU84_RS18070 SM00644 RU84_RS18070 RU84_RS18150 SM00062 Bacterial periplasmic substrate-binding proteins RU84_RS18155 SM00062 Bacterial periplasmic substrate-binding proteins RU84_RS18170 SM00382 ATPases associated with a variety of cellular activities RU84_RS18190 SM00904 Riboflavin kinase RU84_RS18265 SM00849 Metallo-beta-lactamase superfamily RU84_RS18285 SM00235 Zinc-dependent metalloprotease RU84_RS18290 SM00235 Zinc-dependent metalloprotease RU84_RS18310 SM01001 AIR carboxylase RU84_RS18335 SM00014 Acid phosphatase homologues RU84_RS18405 SM01234 RU84_RS18405 RU84_RS18435 SM00382 ATPases associated with a variety of cellular activities