locus-tag class description IX88_RS00030 PF01196 Ribosomal protein L17 IX88_RS00035 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IX88_RS00035 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IX88_RS00035 PF01000 RNA polymerase Rpb3/RpoA insert domain IX88_RS00040 PF01479 S4 domain IX88_RS00040 PF00163 Ribosomal protein S4/S9 N-terminal domain IX88_RS00045 PF00411 Ribosomal protein S11 IX88_RS00050 PF00416 Ribosomal protein S13/S18 IX88_RS00055 PF00444 Ribosomal protein L36 IX88_RS00060 PF00344 SecY translocase IX88_RS00065 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IX88_RS00070 PF00327 Ribosomal protein L30p/L7e IX88_RS00075 PF00333 Ribosomal protein S5, N-terminal domain IX88_RS00075 PF03719 Ribosomal protein S5, C-terminal domain IX88_RS00080 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IX88_RS00085 PF00347 Ribosomal protein L6 IX88_RS00090 PF00410 Ribosomal protein S8 IX88_RS00095 PF00253 Ribosomal protein S14p/S29e IX88_RS00100 PF00281 Ribosomal protein L5 IX88_RS00100 PF00673 ribosomal L5P family C-terminus IX88_RS00105 PF00467 KOW motif IX88_RS00105 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IX88_RS00110 PF00238 Ribosomal protein L14p/L23e IX88_RS00115 PF00366 Ribosomal protein S17 IX88_RS00120 PF00831 Ribosomal L29 protein IX88_RS00125 PF00252 Ribosomal protein L16p/L10e IX88_RS00130 PF00189 Ribosomal protein S3, C-terminal domain IX88_RS00130 PF07650 KH domain IX88_RS00135 PF00237 Ribosomal protein L22p/L17e IX88_RS00140 PF00203 Ribosomal protein S19 IX88_RS00145 PF03947 Ribosomal Proteins L2, C-terminal domain IX88_RS00145 PF00181 Ribosomal Proteins L2, RNA binding domain IX88_RS00150 PF00276 Ribosomal protein L23 IX88_RS00155 PF00573 Ribosomal protein L4/L1 family IX88_RS00160 PF00297 Ribosomal protein L3 IX88_RS00165 PF00338 Ribosomal protein S10p/S20e IX88_RS00170 PF00117 Glutamine amidotransferase class-I IX88_RS00175 PF01053 Cys/Met metabolism PLP-dependent enzyme IX88_RS00180 PF05872 Bacterial protein of unknown function (DUF853) IX88_RS00185 PF00042 Globin IX88_RS00185 PF00970 Oxidoreductase FAD-binding domain IX88_RS00185 PF00175 Oxidoreductase NAD-binding domain IX88_RS00190 PF02082 Transcriptional regulator IX88_RS00195 PF01926 50S ribosome-binding GTPase IX88_RS00205 PF00375 Sodium:dicarboxylate symporter family IX88_RS00215 PF01553 Acyltransferase IX88_RS00230 PF17191 RecG wedge domain IX88_RS00230 PF00271 Helicase conserved C-terminal domain IX88_RS00230 PF00270 DEAD/DEAH box helicase IX88_RS00235 PF00156 Phosphoribosyl transferase domain IX88_RS00240 PF00293 NUDIX domain IX88_RS00245 PF03641 Possible lysine decarboxylase IX88_RS00250 PF01544 CorA-like Mg2+ transporter protein IX88_RS00260 PF05494 MlaC protein IX88_RS00270 PF02405 Permease MlaE IX88_RS00275 PF00005 ABC transporter IX88_RS00285 PF00270 DEAD/DEAH box helicase IX88_RS00285 PF03880 DbpA RNA binding domain IX88_RS00285 PF12343 Cold shock protein DEAD box A IX88_RS00285 PF00271 Helicase conserved C-terminal domain IX88_RS00290 PF00459 Inositol monophosphatase family IX88_RS00295 PF02780 Transketolase, C-terminal domain IX88_RS00295 PF02779 Transketolase, pyrimidine binding domain IX88_RS00295 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IX88_RS00300 PF00925 GTP cyclohydrolase II IX88_RS00305 PF01218 Coproporphyrinogen III oxidase IX88_RS00310 PF08501 Shikimate dehydrogenase substrate binding domain IX88_RS00310 PF01488 Shikimate / quinate 5-dehydrogenase IX88_RS00310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IX88_RS00320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS00320 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_RS00320 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS00320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS00330 PF04024 PspC domain IX88_RS00335 PF00571 CBS domain IX88_RS00350 PF07690 Major Facilitator Superfamily IX88_RS00355 PF02091 Glycyl-tRNA synthetase alpha subunit IX88_RS00360 PF05746 DALR anticodon binding domain IX88_RS00360 PF02092 Glycyl-tRNA synthetase beta subunit IX88_RS00370 PF00892 EamA-like transporter family IX88_RS00375 PF03466 LysR substrate binding domain IX88_RS00375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS00390 PF05922 Peptidase inhibitor I9 IX88_RS00390 PF00082 Subtilase family IX88_RS00405 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IX88_RS00410 PF04996 Succinylarginine dihydrolase IX88_RS00415 PF00171 Aldehyde dehydrogenase family IX88_RS00420 PF04958 Arginine N-succinyltransferase beta subunit IX88_RS00425 PF00202 Aminotransferase class-III IX88_RS00430 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_RS00430 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IX88_RS00435 PF00324 Amino acid permease IX88_RS00445 PF08241 Methyltransferase domain IX88_RS00465 PF13614 AAA domain IX88_RS00470 PF01594 AI-2E family transporter IX88_RS00475 PF00080 Copper/zinc superoxide dismutase (SODC) IX88_RS00480 PF12805 FUSC-like inner membrane protein yccS IX88_RS00485 PF07690 Major Facilitator Superfamily IX88_RS00495 PF02525 Flavodoxin-like fold IX88_RS00500 PF03992 Antibiotic biosynthesis monooxygenase IX88_RS00510 PF02913 FAD linked oxidases, C-terminal domain IX88_RS00510 PF01565 FAD binding domain IX88_RS00515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX88_RS00515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX88_RS00520 PF00892 EamA-like transporter family IX88_RS00525 PF00892 EamA-like transporter family IX88_RS00535 PF01925 Sulfite exporter TauE/SafE IX88_RS00540 PF01509 TruB family pseudouridylate synthase (N terminal domain) IX88_RS00540 PF16198 tRNA pseudouridylate synthase B C-terminal domain IX88_RS00540 PF09157 Pseudouridine synthase II TruB, C-terminal IX88_RS00545 PF03280 Proteobacterial lipase chaperone protein IX88_RS00550 PF00561 alpha/beta hydrolase fold IX88_RS00555 PF01245 Ribosomal protein L19 IX88_RS00560 PF01746 tRNA (Guanine-1)-methyltransferase IX88_RS00565 PF05239 PRC-barrel domain IX88_RS00565 PF01782 RimM N-terminal domain IX88_RS00570 PF00886 Ribosomal protein S16 IX88_RS00580 PF08334 Type II secretion system (T2SS), protein G IX88_RS00580 PF07963 Prokaryotic N-terminal methylation motif IX88_RS00610 PF02401 LytB protein IX88_RS00615 PF00625 Guanylate kinase IX88_RS00620 PF01192 RNA polymerase Rpb6 IX88_RS00625 PF13291 ACT domain IX88_RS00625 PF02824 TGS domain IX88_RS00625 PF04607 Region found in RelA / SpoT proteins IX88_RS00630 PF01042 Endoribonuclease L-PSP IX88_RS00635 PF04324 BFD-like [2Fe-2S] binding domain IX88_RS00640 PF00210 Ferritin-like domain IX88_RS00645 PF15864 Protein glycosylation ligase IX88_RS00645 PF11846 Virulence factor membrane-bound polymerase, C-terminal IX88_RS00645 PF04932 O-Antigen ligase IX88_RS00655 PF07963 Prokaryotic N-terminal methylation motif IX88_RS00655 PF00114 Pilin (bacterial filament) IX88_RS00665 PF04536 TPM domain IX88_RS00670 PF04011 LemA family IX88_RS00680 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS00680 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IX88_RS00685 PF04898 Glutamate synthase central domain IX88_RS00685 PF01493 GXGXG motif IX88_RS00685 PF00310 Glutamine amidotransferases class-II IX88_RS00685 PF01645 Conserved region in glutamate synthase IX88_RS00695 PF01761 3-dehydroquinate synthase IX88_RS00700 PF01202 Shikimate kinase IX88_RS00705 PF07660 Secretin and TonB N terminus short domain IX88_RS00705 PF11741 AMIN domain IX88_RS00705 PF03958 Bacterial type II/III secretion system short domain IX88_RS00705 PF00263 Bacterial type II and III secretion system protein IX88_RS00715 PF04350 Pilus assembly protein, PilO IX88_RS00720 PF05137 Fimbrial assembly protein (PilN) IX88_RS00725 PF11104 Type IV pilus assembly protein PilM; IX88_RS00730 PF00905 Penicillin binding protein transpeptidase domain IX88_RS00730 PF17092 Penicillin-binding protein OB-like domain IX88_RS00730 PF00912 Transglycosylase IX88_RS00735 PF13847 Methyltransferase domain IX88_RS00745 PF00953 Glycosyl transferase family 4 IX88_RS00750 PF08245 Mur ligase middle domain IX88_RS00750 PF01225 Mur ligase family, catalytic domain IX88_RS00750 PF02875 Mur ligase family, glutamate ligase domain IX88_RS00755 PF02875 Mur ligase family, glutamate ligase domain IX88_RS00755 PF01225 Mur ligase family, catalytic domain IX88_RS00755 PF08245 Mur ligase middle domain IX88_RS00760 PF03717 Penicillin-binding Protein dimerisation domain IX88_RS00760 PF00905 Penicillin binding protein transpeptidase domain IX88_RS00770 PF01795 MraW methylase family IX88_RS00785 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX88_RS00800 PF00324 Amino acid permease IX88_RS00830 PF01545 Cation efflux family IX88_RS00835 PF00873 AcrB/AcrD/AcrF family IX88_RS00840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_RS00840 PF00529 HlyD membrane-fusion protein of T1SS IX88_RS00865 PF12848 ABC transporter IX88_RS00865 PF00005 ABC transporter IX88_RS00870 PF01053 Cys/Met metabolism PLP-dependent enzyme IX88_RS00875 PF00106 short chain dehydrogenase IX88_RS00880 PF00916 Sulfate permease family IX88_RS00880 PF01740 STAS domain IX88_RS00885 PF00575 S1 RNA binding domain IX88_RS00885 PF17674 HHH domain IX88_RS00885 PF16921 Tex protein YqgF-like domain IX88_RS00885 PF09371 Tex-like protein N-terminal domain IX88_RS00890 PF00486 Transcriptional regulatory protein, C terminal IX88_RS00890 PF00072 Response regulator receiver domain IX88_RS00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS00895 PF00672 HAMP domain IX88_RS00895 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS00900 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IX88_RS00900 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IX88_RS00905 PF00583 Acetyltransferase (GNAT) family IX88_RS00925 PF00475 Imidazoleglycerol-phosphate dehydratase IX88_RS00930 PF00117 Glutamine amidotransferase class-I IX88_RS00945 PF00977 Histidine biosynthesis protein IX88_RS00950 PF00005 ABC transporter IX88_RS00950 PF00664 ABC transporter transmembrane region IX88_RS00975 PF01636 Phosphotransferase enzyme family IX88_RS00980 PF00977 Histidine biosynthesis protein IX88_RS00995 PF00230 Major intrinsic protein IX88_RS01020 PF02705 K+ potassium transporter IX88_RS01040 PF02525 Flavodoxin-like fold IX88_RS01045 PF01638 HxlR-like helix-turn-helix IX88_RS01055 PF13676 TIR domain IX88_RS01080 PF02311 AraC-like ligand binding domain IX88_RS01080 PF12833 Helix-turn-helix domain IX88_RS01085 PF00248 Aldo/keto reductase family IX88_RS01105 PF03466 LysR substrate binding domain IX88_RS01105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS01110 PF07690 Major Facilitator Superfamily IX88_RS01140 PF01593 Flavin containing amine oxidoreductase IX88_RS01145 PF05726 Pirin C-terminal cupin domain IX88_RS01145 PF02678 Pirin IX88_RS01150 PF00857 Isochorismatase family IX88_RS01155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS01160 PF00171 Aldehyde dehydrogenase family IX88_RS01165 PF00202 Aminotransferase class-III IX88_RS01170 PF00392 Bacterial regulatory proteins, gntR family IX88_RS01170 PF00155 Aminotransferase class I and II IX88_RS01175 PF00324 Amino acid permease IX88_RS01185 PF03591 AzlC protein IX88_RS01195 PF00436 Single-strand binding protein family IX88_RS01200 PF07690 Major Facilitator Superfamily IX88_RS01210 PF08543 Phosphomethylpyrimidine kinase IX88_RS01210 PF02581 Thiamine monophosphate synthase IX88_RS01210 PF03070 TENA/THI-4/PQQC family IX88_RS01215 PF06942 GlpM protein IX88_RS01225 PF00107 Zinc-binding dehydrogenase IX88_RS01225 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS01230 PF00440 Bacterial regulatory proteins, tetR family IX88_RS01230 PF16925 Tetracyclin repressor-like, C-terminal domain IX88_RS01235 PF17760 UvrA interaction domain IX88_RS01235 PF00005 ABC transporter IX88_RS01235 PF17755 UvrA DNA-binding domain IX88_RS01240 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS01250 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_RS01260 PF00474 Sodium:solute symporter family IX88_RS01265 PF04341 Protein of unknown function, DUF485 IX88_RS01270 PF01627 Hpt domain IX88_RS01270 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS01270 PF00672 HAMP domain IX88_RS01270 PF00072 Response regulator receiver domain IX88_RS01280 PF00072 Response regulator receiver domain IX88_RS01280 PF00196 Bacterial regulatory proteins, luxR family IX88_RS01285 PF03358 NADPH-dependent FMN reductase IX88_RS01290 PF00296 Luciferase-like monooxygenase IX88_RS01295 PF01037 Lrp/AsnC ligand binding domain IX88_RS01300 PF00857 Isochorismatase family IX88_RS01305 PF13193 AMP-binding enzyme C-terminal domain IX88_RS01305 PF00501 AMP-binding enzyme IX88_RS01305 PF16177 Acetyl-coenzyme A synthetase N-terminus IX88_RS01315 PF00924 Mechanosensitive ion channel IX88_RS01320 PF04452 RNA methyltransferase IX88_RS01325 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IX88_RS01330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_RS01340 PF00472 RF-1 domain IX88_RS01340 PF03462 PCRF domain IX88_RS01350 PF02272 DHHA1 domain IX88_RS01350 PF01368 DHH family IX88_RS01350 PF17768 RecJ OB domain IX88_RS01355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IX88_RS01355 PF01243 Pyridoxamine 5'-phosphate oxidase IX88_RS01360 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_RS01360 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_RS01360 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_RS01360 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_RS01365 PF00571 CBS domain IX88_RS01365 PF00478 IMP dehydrogenase / GMP reductase domain IX88_RS01370 PF03692 Putative zinc- or iron-chelating domain IX88_RS01375 PF01613 Flavin reductase like domain IX88_RS01375 PF00258 Flavodoxin IX88_RS01380 PF07715 TonB-dependent Receptor Plug Domain IX88_RS01380 PF00593 TonB dependent receptor IX88_RS01385 PF01169 Uncharacterized protein family UPF0016 IX88_RS01395 PF02817 e3 binding domain IX88_RS01395 PF00364 Biotin-requiring enzyme IX88_RS01395 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX88_RS01400 PF00456 Transketolase, thiamine diphosphate binding domain IX88_RS01400 PF17831 Pyruvate dehydrogenase E1 component middle domain IX88_RS01405 PF01551 Peptidase family M23 IX88_RS01415 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IX88_RS01420 PF12327 FtsZ family, C-terminal domain IX88_RS01420 PF00091 Tubulin/FtsZ family, GTPase domain IX88_RS01425 PF02491 SHS2 domain inserted in FTSA IX88_RS01430 PF08478 POTRA domain, FtsQ-type IX88_RS01430 PF03799 Cell division protein FtsQ IX88_RS01435 PF07478 D-ala D-ala ligase C-terminus IX88_RS01435 PF01820 D-ala D-ala ligase N-terminus IX88_RS01440 PF01225 Mur ligase family, catalytic domain IX88_RS01440 PF08245 Mur ligase middle domain IX88_RS01440 PF02875 Mur ligase family, glutamate ligase domain IX88_RS01445 PF03033 Glycosyltransferase family 28 N-terminal domain IX88_RS01445 PF04101 Glycosyltransferase family 28 C-terminal domain IX88_RS01450 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IX88_RS01450 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IX88_RS01460 PF00593 TonB dependent receptor IX88_RS01460 PF07715 TonB-dependent Receptor Plug Domain IX88_RS01465 PF00156 Phosphoribosyl transferase domain IX88_RS01470 PF03372 Endonuclease/Exonuclease/phosphatase family IX88_RS01475 PF03960 ArsC family IX88_RS01485 PF07859 alpha/beta hydrolase fold IX88_RS01490 PF07694 5TMR of 5TMR-LYT IX88_RS01490 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS01495 PF02683 Cytochrome C biogenesis protein transmembrane region IX88_RS01495 PF11412 Disulphide bond corrector protein DsbC IX88_RS01525 PF00576 HIUase/Transthyretin family IX88_RS01530 PF00860 Permease family IX88_RS01540 PF01494 FAD binding domain IX88_RS01545 PF03561 Allantoicase repeat IX88_RS01550 PF04115 Ureidoglycolate lyase IX88_RS01555 PF01751 Toprim domain IX88_RS01555 PF00204 DNA gyrase B IX88_RS01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS01555 PF00986 DNA gyrase B subunit, carboxyl terminus IX88_RS01560 PF05728 Uncharacterised protein family (UPF0227) IX88_RS01625 PF04717 Type VI secretion system, phage-baseplate injector IX88_RS01625 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IX88_RS01625 PF13296 Putative type VI secretion system Rhs element Vgr IX88_RS01630 PF02600 Disulfide bond formation protein DsbB IX88_RS01635 PF04262 Glutamate-cysteine ligase IX88_RS01650 PF04286 Protein of unknown function (DUF445) IX88_RS01655 PF00155 Aminotransferase class I and II IX88_RS01660 PF01554 MatE IX88_RS01665 PF00106 short chain dehydrogenase IX88_RS01675 PF00486 Transcriptional regulatory protein, C terminal IX88_RS01675 PF00072 Response regulator receiver domain IX88_RS01680 PF00989 PAS fold IX88_RS01680 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS01680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS01680 PF11808 Phosphate regulon sensor protein PhoR IX88_RS01690 PF02666 Phosphatidylserine decarboxylase IX88_RS01695 PF00581 Rhodanese-like domain IX88_RS01700 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IX88_RS01700 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IX88_RS01705 PF02580 D-Tyr-tRNA(Tyr) deacylase IX88_RS01730 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IX88_RS01730 PF00925 GTP cyclohydrolase II IX88_RS01735 PF00885 6,7-dimethyl-8-ribityllumazine synthase IX88_RS01740 PF01029 NusB family IX88_RS01745 PF02769 AIR synthase related protein, C-terminal domain IX88_RS01745 PF00586 AIR synthase related protein, N-terminal domain IX88_RS01750 PF04608 Phosphatidylglycerophosphatase A IX88_RS01755 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS01755 PF14602 Hexapeptide repeat of succinyl-transferase IX88_RS01755 PF12804 MobA-like NTP transferase domain IX88_RS01760 PF01380 SIS domain IX88_RS01765 PF01177 Asp/Glu/Hydantoin racemase IX88_RS01770 PF13419 Haloacid dehalogenase-like hydrolase IX88_RS01780 PF00491 Arginase family IX88_RS01785 PF01979 Amidohydrolase family IX88_RS01790 PF00324 Amino acid permease IX88_RS01795 PF00221 Aromatic amino acid lyase IX88_RS01800 PF17391 Urocanase N-terminal domain IX88_RS01800 PF17392 Urocanase C-terminal domain IX88_RS01800 PF01175 Urocanase Rossmann-like domain IX88_RS01805 PF05962 HutD IX88_RS01810 PF00392 Bacterial regulatory proteins, gntR family IX88_RS01810 PF07702 UTRA domain IX88_RS01820 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX88_RS01820 PF07683 Cobalamin synthesis protein cobW C-terminal domain IX88_RS01830 PF00324 Amino acid permease IX88_RS01840 PF02798 Glutathione S-transferase, N-terminal domain IX88_RS01840 PF14497 Glutathione S-transferase, C-terminal domain IX88_RS01845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_RS01855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_RS01860 PF04463 Protein of unknown function (DUF523) IX88_RS01865 PF01554 MatE IX88_RS01870 PF01758 Sodium Bile acid symporter family IX88_RS01875 PF00857 Isochorismatase family IX88_RS01880 PF00701 Dihydrodipicolinate synthetase family IX88_RS01890 PF01259 SAICAR synthetase IX88_RS01900 PF01226 Formate/nitrite transporter IX88_RS01905 PF16193 AAA C-terminal domain IX88_RS01905 PF12002 MgsA AAA+ ATPase C terminal IX88_RS01905 PF00004 ATPase family associated with various cellular activities (AAA) IX88_RS01910 PF07995 Glucose / Sorbosone dehydrogenase IX88_RS01915 PF03692 Putative zinc- or iron-chelating domain IX88_RS01920 PF07043 Protein of unknown function (DUF1328) IX88_RS01935 PF10576 Iron-sulfur binding domain of endonuclease III IX88_RS01935 PF14815 NUDIX domain IX88_RS01935 PF00633 Helix-hairpin-helix motif IX88_RS01935 PF00730 HhH-GPD superfamily base excision DNA repair protein IX88_RS01950 PF03352 Methyladenine glycosylase IX88_RS01955 PF00107 Zinc-binding dehydrogenase IX88_RS01955 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS01960 PF00155 Aminotransferase class I and II IX88_RS01960 PF00392 Bacterial regulatory proteins, gntR family IX88_RS01970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS01970 PF03466 LysR substrate binding domain IX88_RS01975 PF00248 Aldo/keto reductase family IX88_RS01980 PF07690 Major Facilitator Superfamily IX88_RS01990 PF05173 Dihydrodipicolinate reductase, C-terminus IX88_RS01990 PF01113 Dihydrodipicolinate reductase, N-terminus IX88_RS02000 PF00684 DnaJ central domain IX88_RS02000 PF00226 DnaJ domain IX88_RS02000 PF01556 DnaJ C terminal domain IX88_RS02010 PF00873 AcrB/AcrD/AcrF family IX88_RS02015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_RS02020 PF00440 Bacterial regulatory proteins, tetR family IX88_RS02020 PF08361 MAATS-type transcriptional repressor, C-terminal region IX88_RS02025 PF00311 Phosphoenolpyruvate carboxylase IX88_RS02030 PF00860 Permease family IX88_RS02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS02035 PF03466 LysR substrate binding domain IX88_RS02050 PF00920 Dehydratase family IX88_RS02055 PF02911 Formyl transferase, C-terminal domain IX88_RS02055 PF00551 Formyl transferase IX88_RS02060 PF01029 NusB family IX88_RS02060 PF01189 16S rRNA methyltransferase RsmB/F IX88_RS02070 PF00209 Sodium:neurotransmitter symporter family IX88_RS02110 PF00579 tRNA synthetases class I (W and Y) IX88_RS02115 PF03702 Anhydro-N-acetylmuramic acid kinase IX88_RS02120 PF00561 alpha/beta hydrolase fold IX88_RS02125 PF01521 Iron-sulphur cluster biosynthesis IX88_RS02145 PF00005 ABC transporter IX88_RS02145 PF12848 ABC transporter IX88_RS02150 PF09335 SNARE associated Golgi protein IX88_RS02160 PF00986 DNA gyrase B subunit, carboxyl terminus IX88_RS02160 PF01751 Toprim domain IX88_RS02160 PF00204 DNA gyrase B IX88_RS02160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS02160 PF18053 DNA gyrase B subunit insert domain IX88_RS02165 PF02463 RecF/RecN/SMC N terminal domain IX88_RS02170 PF02767 DNA polymerase III beta subunit, central domain IX88_RS02170 PF02768 DNA polymerase III beta subunit, C-terminal domain IX88_RS02170 PF00712 DNA polymerase III beta subunit, N-terminal domain IX88_RS02175 PF11638 DnaA N-terminal domain IX88_RS02175 PF08299 Bacterial dnaA protein helix-turn-helix IX88_RS02175 PF00308 Bacterial dnaA protein IX88_RS02180 PF00468 Ribosomal protein L34 IX88_RS02185 PF00825 Ribonuclease P IX88_RS02190 PF01809 Putative membrane protein insertion efficiency factor IX88_RS02195 PF14849 YidC periplasmic domain IX88_RS02195 PF02096 60Kd inner membrane protein IX88_RS02200 PF01926 50S ribosome-binding GTPase IX88_RS02200 PF12631 MnmE helical domain IX88_RS02200 PF10396 GTP-binding protein TrmE N-terminus IX88_RS02205 PF02583 Metal-sensitive transcriptional repressor IX88_RS02210 PF16916 Dimerisation domain of Zinc Transporter IX88_RS02210 PF01545 Cation efflux family IX88_RS02215 PF13098 Thioredoxin-like domain IX88_RS02215 PF10411 Disulfide bond isomerase protein N-terminus IX88_RS02225 PF00156 Phosphoribosyl transferase domain IX88_RS02235 PF01979 Amidohydrolase family IX88_RS02240 PF00355 Rieske [2Fe-2S] domain IX88_RS02245 PF03738 Glutathionylspermidine synthase preATP-grasp IX88_RS02255 PF03741 Integral membrane protein TerC family IX88_RS02260 PF01569 PAP2 superfamily IX88_RS02270 PF01225 Mur ligase family, catalytic domain IX88_RS02270 PF02875 Mur ligase family, glutamate ligase domain IX88_RS02270 PF08245 Mur ligase middle domain IX88_RS02280 PF00731 AIR carboxylase IX88_RS02285 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IX88_RS02285 PF02222 ATP-grasp domain IX88_RS02290 PF13406 Transglycosylase SLT domain IX88_RS02310 PF00012 Hsp70 protein IX88_RS02315 PF01025 GrpE IX88_RS02320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS02320 PF03466 LysR substrate binding domain IX88_RS02340 PF07859 alpha/beta hydrolase fold IX88_RS02345 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IX88_RS02385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_RS02390 PF01252 Signal peptidase (SPase) II IX88_RS02395 PF08264 Anticodon-binding domain of tRNA IX88_RS02395 PF00133 tRNA synthetases class I (I, L, M and V) IX88_RS02395 PF06827 Zinc finger found in FPG and IleRS IX88_RS02400 PF01687 Riboflavin kinase IX88_RS02400 PF06574 FAD synthetase IX88_RS02410 PF01048 Phosphorylase superfamily IX88_RS02415 PF08362 YcdC-like protein, C-terminal region IX88_RS02415 PF00440 Bacterial regulatory proteins, tetR family IX88_RS02420 PF00005 ABC transporter IX88_RS02425 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS02430 PF00296 Luciferase-like monooxygenase IX88_RS02435 PF09084 NMT1/THI5 like IX88_RS02440 PF09084 NMT1/THI5 like IX88_RS02445 PF00696 Amino acid kinase family IX88_RS02445 PF00583 Acetyltransferase (GNAT) family IX88_RS02460 PF00106 short chain dehydrogenase IX88_RS02465 PF13419 Haloacid dehalogenase-like hydrolase IX88_RS02475 PF01323 DSBA-like thioredoxin domain IX88_RS02480 PF08360 QacR-like protein, C-terminal region IX88_RS02480 PF00440 Bacterial regulatory proteins, tetR family IX88_RS02485 PF00440 Bacterial regulatory proteins, tetR family IX88_RS02490 PF00175 Oxidoreductase NAD-binding domain IX88_RS02495 PF00487 Fatty acid desaturase IX88_RS02500 PF03725 3' exoribonuclease family, domain 2 IX88_RS02500 PF01138 3' exoribonuclease family, domain 1 IX88_RS02505 PF04185 Phosphoesterase family IX88_RS02505 PF05506 Domain of unknown function (DUF756) IX88_RS02515 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IX88_RS02515 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IX88_RS02520 PF01510 N-acetylmuramoyl-L-alanine amidase IX88_RS02525 PF03023 Lipid II flippase MurJ IX88_RS02530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_RS02530 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IX88_RS02535 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IX88_RS02535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_RS02540 PF02706 Chain length determinant protein IX88_RS02540 PF13614 AAA domain IX88_RS02540 PF13807 G-rich domain on putative tyrosine kinase IX88_RS02545 PF01451 Low molecular weight phosphotyrosine protein phosphatase IX88_RS02550 PF18412 Outer-membrane lipoprotein Wza C-terminal domain IX88_RS02550 PF10531 SLBB domain IX88_RS02550 PF02563 Polysaccharide biosynthesis/export protein IX88_RS02555 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IX88_RS02555 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IX88_RS02555 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IX88_RS02565 PF00535 Glycosyl transferase family 2 IX88_RS02570 PF13439 Glycosyltransferase Family 4 IX88_RS02570 PF00534 Glycosyl transferases group 1 IX88_RS02580 PF13439 Glycosyltransferase Family 4 IX88_RS02580 PF00534 Glycosyl transferases group 1 IX88_RS02585 PF00534 Glycosyl transferases group 1 IX88_RS02585 PF13477 Glycosyl transferase 4-like IX88_RS02590 PF02397 Bacterial sugar transferase IX88_RS02595 PF00483 Nucleotidyl transferase IX88_RS02600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IX88_RS02600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IX88_RS02600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IX88_RS02605 PF00342 Phosphoglucose isomerase IX88_RS02610 PF16363 GDP-mannose 4,6 dehydratase IX88_RS02620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_RS02620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_RS02620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_RS02620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_RS02625 PF02652 L-lactate permease IX88_RS02630 PF07729 FCD domain IX88_RS02630 PF00392 Bacterial regulatory proteins, gntR family IX88_RS02635 PF01070 FMN-dependent dehydrogenase IX88_RS02640 PF09330 D-lactate dehydrogenase, membrane binding IX88_RS02640 PF01565 FAD binding domain IX88_RS02645 PF00155 Aminotransferase class I and II IX88_RS02650 PF07729 FCD domain IX88_RS02650 PF00392 Bacterial regulatory proteins, gntR family IX88_RS02660 PF00285 Citrate synthase, C-terminal domain IX88_RS02665 PF00330 Aconitase family (aconitate hydratase) IX88_RS02665 PF00694 Aconitase C-terminal domain IX88_RS02715 PF00849 RNA pseudouridylate synthase IX88_RS02730 PF00593 TonB dependent receptor IX88_RS02730 PF07715 TonB-dependent Receptor Plug Domain IX88_RS02740 PF01037 Lrp/AsnC ligand binding domain IX88_RS02745 PF01266 FAD dependent oxidoreductase IX88_RS02750 PF01168 Alanine racemase, N-terminal domain IX88_RS02750 PF00842 Alanine racemase, C-terminal domain IX88_RS02755 PF01042 Endoribonuclease L-PSP IX88_RS02760 PF00324 Amino acid permease IX88_RS02765 PF00324 Amino acid permease IX88_RS02775 PF00171 Aldehyde dehydrogenase family IX88_RS02780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX88_RS02780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX88_RS02785 PF00501 AMP-binding enzyme IX88_RS02785 PF13193 AMP-binding enzyme C-terminal domain IX88_RS02790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS02790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS02790 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS02795 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS02800 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS02805 PF07690 Major Facilitator Superfamily IX88_RS02805 PF00083 Sugar (and other) transporter IX88_RS02810 PF00765 Autoinducer synthase IX88_RS02820 PF00196 Bacterial regulatory proteins, luxR family IX88_RS02820 PF03472 Autoinducer binding domain IX88_RS02825 PF00501 AMP-binding enzyme IX88_RS02830 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS02830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS02830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS02835 PF16197 Ketoacyl-synthetase C-terminal extension IX88_RS02835 PF00109 Beta-ketoacyl synthase, N-terminal domain IX88_RS02835 PF00975 Thioesterase domain IX88_RS02835 PF02801 Beta-ketoacyl synthase, C-terminal domain IX88_RS02835 PF14765 Polyketide synthase dehydratase IX88_RS02835 PF00550 Phosphopantetheine attachment site IX88_RS02835 PF08242 Methyltransferase domain IX88_RS02840 PF00668 Condensation domain IX88_RS02840 PF00975 Thioesterase domain IX88_RS02840 PF13193 AMP-binding enzyme C-terminal domain IX88_RS02840 PF00501 AMP-binding enzyme IX88_RS02840 PF00550 Phosphopantetheine attachment site IX88_RS02855 PF16363 GDP-mannose 4,6 dehydratase IX88_RS02860 PF01648 4'-phosphopantetheinyl transferase superfamily IX88_RS02875 PF01722 BolA-like protein IX88_RS02885 PF13614 AAA domain IX88_RS02900 PF09335 SNARE associated Golgi protein IX88_RS02905 PF07681 DoxX IX88_RS02910 PF04286 Protein of unknown function (DUF445) IX88_RS02915 PF00958 GMP synthase C terminal domain IX88_RS02915 PF02540 NAD synthase IX88_RS02915 PF00117 Glutamine amidotransferase class-I IX88_RS02920 PF01909 Nucleotidyltransferase domain IX88_RS02920 PF13427 Domain of unknown function (DUF4111) IX88_RS02925 PF03551 Transcriptional regulator PadR-like family IX88_RS02935 PF05726 Pirin C-terminal cupin domain IX88_RS02935 PF02678 Pirin IX88_RS02955 PF05746 DALR anticodon binding domain IX88_RS02955 PF03485 Arginyl tRNA synthetase N terminal domain IX88_RS02955 PF00750 tRNA synthetases class I (R) IX88_RS02960 PF03949 Malic enzyme, NAD binding domain IX88_RS02960 PF00390 Malic enzyme, N-terminal domain IX88_RS02965 PF04261 Dyp-type peroxidase family IX88_RS02970 PF01810 LysE type translocator IX88_RS02975 PF00950 ABC 3 transport family IX88_RS02980 PF00005 ABC transporter IX88_RS03000 PF00119 ATP synthase A chain IX88_RS03005 PF00137 ATP synthase subunit C IX88_RS03010 PF00430 ATP synthase B/B' CF(0) IX88_RS03015 PF00213 ATP synthase delta (OSCP) subunit IX88_RS03020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX88_RS03020 PF00306 ATP synthase alpha/beta chain, C terminal domain IX88_RS03020 PF02874 ATP synthase alpha/beta family, beta-barrel domain IX88_RS03025 PF00231 ATP synthase IX88_RS03030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX88_RS03030 PF02874 ATP synthase alpha/beta family, beta-barrel domain IX88_RS03035 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IX88_RS03045 PF00255 Glutathione peroxidase IX88_RS03055 PF07690 Major Facilitator Superfamily IX88_RS03060 PF00440 Bacterial regulatory proteins, tetR family IX88_RS03065 PF00892 EamA-like transporter family IX88_RS03070 PF01300 Telomere recombination IX88_RS03075 PF02481 DNA recombination-mediator protein A IX88_RS03075 PF17782 DprA winged helix domain IX88_RS03085 PF01327 Polypeptide deformylase IX88_RS03110 PF00440 Bacterial regulatory proteins, tetR family IX88_RS03145 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS03155 PF03358 NADPH-dependent FMN reductase IX88_RS03175 PF04055 Radical SAM superfamily IX88_RS03175 PF11842 Domain of unknown function (DUF3362) IX88_RS03175 PF08497 Radical SAM N-terminal IX88_RS03190 PF11798 IMS family HHH motif IX88_RS03190 PF11799 impB/mucB/samB family C-terminal domain IX88_RS03190 PF00817 impB/mucB/samB family IX88_RS03200 PF07690 Major Facilitator Superfamily IX88_RS03205 PF03641 Possible lysine decarboxylase IX88_RS03210 PF03741 Integral membrane protein TerC family IX88_RS03210 PF03471 Transporter associated domain IX88_RS03215 PF02810 SEC-C motif IX88_RS03220 PF03458 UPF0126 domain IX88_RS03225 PF07690 Major Facilitator Superfamily IX88_RS03230 PF00521 DNA gyrase/topoisomerase IV, subunit A IX88_RS03230 PF03989 DNA gyrase C-terminal domain, beta-propeller IX88_RS03235 PF00501 AMP-binding enzyme IX88_RS03235 PF13193 AMP-binding enzyme C-terminal domain IX88_RS03250 PF00719 Inorganic pyrophosphatase IX88_RS03255 PF03573 outer membrane porin, OprD family IX88_RS03265 PF00701 Dihydrodipicolinate synthetase family IX88_RS03275 PF00392 Bacterial regulatory proteins, gntR family IX88_RS03275 PF00155 Aminotransferase class I and II IX88_RS03280 PF01078 Magnesium chelatase, subunit ChlI IX88_RS03280 PF13335 Magnesium chelatase, subunit ChlI C-terminal IX88_RS03290 PF00543 Nitrogen regulatory protein P-II IX88_RS03295 PF00909 Ammonium Transporter Family IX88_RS03300 PF03477 ATP cone domain IX88_RS03305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IX88_RS03305 PF01872 RibD C-terminal domain IX88_RS03315 PF00677 Lumazine binding domain IX88_RS03335 PF00883 Cytosol aminopeptidase family, catalytic domain IX88_RS03335 PF02789 Cytosol aminopeptidase family, N-terminal domain IX88_RS03345 PF03739 Lipopolysaccharide export system permease LptF/LptG IX88_RS03350 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IX88_RS03350 PF01676 Metalloenzyme superfamily IX88_RS03355 PF03572 Peptidase family S41 IX88_RS03355 PF00595 PDZ domain IX88_RS03360 PF00158 Sigma-54 interaction domain IX88_RS03360 PF02954 Bacterial regulatory protein, Fis family IX88_RS03360 PF00072 Response regulator receiver domain IX88_RS03365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS03365 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS03370 PF00196 Bacterial regulatory proteins, luxR family IX88_RS03370 PF00072 Response regulator receiver domain IX88_RS03375 PF00768 D-alanyl-D-alanine carboxypeptidase IX88_RS03380 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS03385 PF03447 Homoserine dehydrogenase, NAD binding domain IX88_RS03385 PF00742 Homoserine dehydrogenase IX88_RS03385 PF01842 ACT domain IX88_RS03390 PF13098 Thioredoxin-like domain IX88_RS03390 PF10411 Disulfide bond isomerase protein N-terminus IX88_RS03395 PF02899 Phage integrase, N-terminal SAM-like domain IX88_RS03395 PF00589 Phage integrase family IX88_RS03405 PF02421 Ferrous iron transport protein B IX88_RS03405 PF07670 Nucleoside recognition IX88_RS03405 PF07664 Ferrous iron transport protein B C terminus IX88_RS03415 PF02875 Mur ligase family, glutamate ligase domain IX88_RS03415 PF08245 Mur ligase middle domain IX88_RS03420 PF01098 Cell cycle protein IX88_RS03425 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX88_RS03430 PF01258 Prokaryotic dksA/traR C4-type zinc finger IX88_RS03435 PF00149 Calcineurin-like phosphoesterase IX88_RS03440 PF00293 NUDIX domain IX88_RS03445 PF13667 ThiC-associated domain IX88_RS03445 PF01964 Radical SAM ThiC family IX88_RS03460 PF00892 EamA-like transporter family IX88_RS03465 PF02321 Outer membrane efflux protein IX88_RS03470 PF01895 PhoU domain IX88_RS03475 PF04362 Bacterial Fe(2+) trafficking IX88_RS03480 PF00206 Lyase IX88_RS03480 PF14698 Argininosuccinate lyase C-terminal IX88_RS03485 PF06580 Histidine kinase IX88_RS03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS03485 PF07694 5TMR of 5TMR-LYT IX88_RS03490 PF00072 Response regulator receiver domain IX88_RS03490 PF04397 LytTr DNA-binding domain IX88_RS03495 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IX88_RS03495 PF03900 Porphobilinogen deaminase, C-terminal domain IX88_RS03520 PF00816 H-NS histone family IX88_RS03535 PF00263 Bacterial type II and III secretion system protein IX88_RS03535 PF03958 Bacterial type II/III secretion system short domain IX88_RS03540 PF12401 Protein of unknown function (DUF2662) IX88_RS03540 PF00498 FHA domain IX88_RS03545 PF13419 Haloacid dehalogenase-like hydrolase IX88_RS03550 PF04715 Anthranilate synthase component I, N terminal region IX88_RS03550 PF00425 chorismate binding enzyme IX88_RS03575 PF03143 Elongation factor Tu C-terminal domain IX88_RS03575 PF03144 Elongation factor Tu domain 2 IX88_RS03575 PF00009 Elongation factor Tu GTP binding domain IX88_RS03585 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IX88_RS03590 PF02357 Transcription termination factor nusG IX88_RS03590 PF00467 KOW motif IX88_RS03595 PF00298 Ribosomal protein L11, RNA binding domain IX88_RS03595 PF03946 Ribosomal protein L11, N-terminal domain IX88_RS03600 PF00687 Ribosomal protein L1p/L10e family IX88_RS03605 PF00466 Ribosomal protein L10 IX88_RS03610 PF16320 Ribosomal protein L7/L12 dimerisation domain IX88_RS03610 PF00542 Ribosomal protein L7/L12 C-terminal domain IX88_RS03615 PF04560 RNA polymerase Rpb2, domain 7 IX88_RS03615 PF04563 RNA polymerase beta subunit IX88_RS03615 PF10385 RNA polymerase beta subunit external 1 domain IX88_RS03615 PF04561 RNA polymerase Rpb2, domain 2 IX88_RS03615 PF00562 RNA polymerase Rpb2, domain 6 IX88_RS03615 PF04565 RNA polymerase Rpb2, domain 3 IX88_RS03620 PF04997 RNA polymerase Rpb1, domain 1 IX88_RS03620 PF00623 RNA polymerase Rpb1, domain 2 IX88_RS03620 PF04983 RNA polymerase Rpb1, domain 3 IX88_RS03620 PF05000 RNA polymerase Rpb1, domain 4 IX88_RS03620 PF04998 RNA polymerase Rpb1, domain 5 IX88_RS03650 PF01636 Phosphotransferase enzyme family IX88_RS03655 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IX88_RS03675 PF17841 BID domain of Bartonella effector protein (Bep) IX88_RS03675 PF03389 MobA/MobL family IX88_RS03675 PF01443 Viral (Superfamily 1) RNA helicase IX88_RS03685 PF13610 DDE domain IX88_RS03695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_RS03695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_RS03695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_RS03695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_RS03700 PF00809 Pterin binding enzyme IX88_RS03715 PF00561 alpha/beta hydrolase fold IX88_RS03720 PF03553 Na+/H+ antiporter family IX88_RS03720 PF13726 Na+-H+ antiporter family IX88_RS03735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS03735 PF00183 Hsp90 protein IX88_RS03750 PF01323 DSBA-like thioredoxin domain IX88_RS03760 PF09278 MerR, DNA binding IX88_RS03760 PF00376 MerR family regulatory protein IX88_RS03775 PF02803 Thiolase, C-terminal domain IX88_RS03775 PF00108 Thiolase, N-terminal domain IX88_RS03780 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS03780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_RS03780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_RS03795 PF02151 UvrB/uvrC motif IX88_RS03795 PF01541 GIY-YIG catalytic domain IX88_RS03795 PF08459 UvrC Helix-hairpin-helix N-terminal IX88_RS03805 PF01066 CDP-alcohol phosphatidyltransferase IX88_RS03810 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IX88_RS03810 PF12833 Helix-turn-helix domain IX88_RS03810 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX88_RS03810 PF02805 Metal binding domain of Ada IX88_RS03835 PF13533 Biotin-lipoyl like IX88_RS03840 PF03652 Holliday junction resolvase IX88_RS03845 PF02622 Uncharacterized ACR, COG1678 IX88_RS03850 PF02463 RecF/RecN/SMC N terminal domain IX88_RS03860 PF06865 Pyrimidine/purine nucleoside phosphorylase IX88_RS03865 PF00588 SpoU rRNA Methylase family IX88_RS03865 PF08032 RNA 2'-O ribose methyltransferase substrate binding IX88_RS03875 PF01121 Dephospho-CoA kinase IX88_RS03880 PF06750 Bacterial Peptidase A24 N-terminal domain IX88_RS03880 PF01478 Type IV leader peptidase family IX88_RS03885 PF00482 Type II secretion system (T2SS), protein F IX88_RS03890 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IX88_RS03890 PF00437 Type II/IV secretion system protein IX88_RS03895 PF00121 Triosephosphate isomerase IX88_RS03900 PF03840 Preprotein translocase SecG subunit IX88_RS03920 PF02576 RimP N-terminal domain IX88_RS03920 PF17384 RimP C-terminal SH3 domain IX88_RS03925 PF00575 S1 RNA binding domain IX88_RS03925 PF13184 NusA-like KH domain IX88_RS03925 PF08529 NusA N-terminal domain IX88_RS03930 PF04760 Translation initiation factor IF-2, N-terminal region IX88_RS03930 PF08364 Bacterial translation initiation factor IF-2 associated region IX88_RS03930 PF11987 Translation-initiation factor 2 IX88_RS03930 PF00009 Elongation factor Tu GTP binding domain IX88_RS03935 PF02033 Ribosome-binding factor A IX88_RS03940 PF03334 Na+/H+ antiporter subunit IX88_RS03945 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IX88_RS03950 PF01899 Na+/H+ ion antiporter subunit IX88_RS03955 PF00361 Proton-conducting membrane transporter IX88_RS03960 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IX88_RS03965 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IX88_RS03965 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IX88_RS03965 PF00361 Proton-conducting membrane transporter IX88_RS03965 PF13244 Domain of unknown function (DUF4040) IX88_RS03980 PF01502 Phosphoribosyl-AMP cyclohydrolase IX88_RS03985 PF01494 FAD binding domain IX88_RS03990 PF03109 ABC1 family IX88_RS04000 PF01209 ubiE/COQ5 methyltransferase family IX88_RS04010 PF03976 Polyphosphate kinase 2 (PPK2) IX88_RS04020 PF17946 RecC C-terminal domain IX88_RS04025 PF13361 UvrD-like helicase C-terminal domain IX88_RS04025 PF00580 UvrD/REP helicase N-terminal domain IX88_RS04025 PF12705 PD-(D/E)XK nuclease superfamily IX88_RS04030 PF13538 UvrD-like helicase C-terminal domain IX88_RS04035 PF00144 Beta-lactamase IX88_RS04040 PF00312 Ribosomal protein S15 IX88_RS04045 PF00575 S1 RNA binding domain IX88_RS04045 PF01138 3' exoribonuclease family, domain 1 IX88_RS04045 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IX88_RS04045 PF00013 KH domain IX88_RS04045 PF03725 3' exoribonuclease family, domain 2 IX88_RS04050 PF01544 CorA-like Mg2+ transporter protein IX88_RS04060 PF00226 DnaJ domain IX88_RS04060 PF01556 DnaJ C terminal domain IX88_RS04070 PF01430 Hsp33 protein IX88_RS04075 PF02254 TrkA-N domain IX88_RS04075 PF00999 Sodium/hydrogen exchanger family IX88_RS04080 PF00270 DEAD/DEAH box helicase IX88_RS04080 PF00271 Helicase conserved C-terminal domain IX88_RS04080 PF17764 3′ DNA-binding domain (3′BD) IX88_RS04080 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IX88_RS04080 PF18074 Primosomal protein N C-terminal domain IX88_RS04085 PF00482 Type II secretion system (T2SS), protein F IX88_RS04090 PF08334 Type II secretion system (T2SS), protein G IX88_RS04090 PF07963 Prokaryotic N-terminal methylation motif IX88_RS04100 PF01588 Putative tRNA binding domain IX88_RS04105 PF00795 Carbon-nitrogen hydrolase IX88_RS04110 PF03471 Transporter associated domain IX88_RS04110 PF00571 CBS domain IX88_RS04115 PF01206 Sulfurtransferase TusA IX88_RS04135 PF01177 Asp/Glu/Hydantoin racemase IX88_RS04145 PF00762 Ferrochelatase IX88_RS04150 PF00753 Metallo-beta-lactamase superfamily IX88_RS04155 PF03884 DNA gyrase inhibitor YacG IX88_RS04165 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS04165 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IX88_RS04165 PF13247 4Fe-4S dicluster domain IX88_RS04175 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IX88_RS04185 PF01197 Ribosomal protein L31 IX88_RS04190 PF03109 ABC1 family IX88_RS04195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS04195 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS04200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS04200 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS04200 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS04205 PF01554 MatE IX88_RS04215 PF06969 HemN C-terminal domain IX88_RS04215 PF04055 Radical SAM superfamily IX88_RS04220 PF00106 short chain dehydrogenase IX88_RS04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS04225 PF03466 LysR substrate binding domain IX88_RS04240 PF00501 AMP-binding enzyme IX88_RS04240 PF13193 AMP-binding enzyme C-terminal domain IX88_RS04245 PF12111 Polyribonucleotide phosphorylase C terminal IX88_RS04245 PF10150 Ribonuclease E/G family IX88_RS04245 PF00575 S1 RNA binding domain IX88_RS04250 PF00849 RNA pseudouridylate synthase IX88_RS04250 PF01479 S4 domain IX88_RS04255 PF13419 Haloacid dehalogenase-like hydrolase IX88_RS04260 PF13280 WYL domain IX88_RS04260 PF08279 HTH domain IX88_RS04265 PF02798 Glutathione S-transferase, N-terminal domain IX88_RS04275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS04275 PF03466 LysR substrate binding domain IX88_RS04280 PF12706 Beta-lactamase superfamily domain IX88_RS04285 PF00141 Peroxidase IX88_RS04290 PF01590 GAF domain IX88_RS04290 PF05524 PEP-utilising enzyme, N-terminal IX88_RS04290 PF00391 PEP-utilising enzyme, mobile domain IX88_RS04290 PF02896 PEP-utilising enzyme, TIM barrel domain IX88_RS04295 PF00293 NUDIX domain IX88_RS04305 PF03466 LysR substrate binding domain IX88_RS04305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS04315 PF00330 Aconitase family (aconitate hydratase) IX88_RS04320 PF00694 Aconitase C-terminal domain IX88_RS04330 PF00180 Isocitrate/isopropylmalate dehydrogenase IX88_RS04345 PF01176 Translation initiation factor 1A / IF-1 IX88_RS04355 PF01416 tRNA pseudouridine synthase IX88_RS04375 PF02774 Semialdehyde dehydrogenase, dimerisation domain IX88_RS04375 PF01118 Semialdehyde dehydrogenase, NAD binding domain IX88_RS04385 PF00375 Sodium:dicarboxylate symporter family IX88_RS04395 PF03279 Bacterial lipid A biosynthesis acyltransferase IX88_RS04400 PF01810 LysE type translocator IX88_RS04410 PF16326 ABC transporter C-terminal domain IX88_RS04410 PF00005 ABC transporter IX88_RS04410 PF12848 ABC transporter IX88_RS04415 PF04102 SlyX IX88_RS04420 PF00107 Zinc-binding dehydrogenase IX88_RS04420 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS04425 PF01638 HxlR-like helix-turn-helix IX88_RS04435 PF08272 Topoisomerase I zinc-ribbon-like IX88_RS04435 PF01751 Toprim domain IX88_RS04435 PF01131 DNA topoisomerase IX88_RS04435 PF01396 Topoisomerase DNA binding C4 zinc finger IX88_RS04450 PF00580 UvrD/REP helicase N-terminal domain IX88_RS04450 PF13361 UvrD-like helicase C-terminal domain IX88_RS04455 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IX88_RS04475 PF02254 TrkA-N domain IX88_RS04475 PF00999 Sodium/hydrogen exchanger family IX88_RS04480 PF00471 Ribosomal protein L33 IX88_RS04485 PF00830 Ribosomal L28 family IX88_RS04490 PF00171 Aldehyde dehydrogenase family IX88_RS04500 PF01842 ACT domain IX88_RS04500 PF00551 Formyl transferase IX88_RS04510 PF01618 MotA/TolQ/ExbB proton channel family IX88_RS04520 PF01625 Peptide methionine sulfoxide reductase IX88_RS04530 PF00186 Dihydrofolate reductase IX88_RS04535 PF00303 Thymidylate synthase IX88_RS04550 PF01790 Prolipoprotein diacylglyceryl transferase IX88_RS04570 PF00902 Sec-independent protein translocase protein (TatC) IX88_RS04575 PF02416 mttA/Hcf106 family IX88_RS04580 PF02416 mttA/Hcf106 family IX88_RS04590 PF01725 Ham1 family IX88_RS04600 PF00561 alpha/beta hydrolase fold IX88_RS04600 PF07021 Methionine biosynthesis protein MetW IX88_RS04605 PF00561 alpha/beta hydrolase fold IX88_RS04610 PF00682 HMGL-like IX88_RS04610 PF08502 LeuA allosteric (dimerisation) domain IX88_RS04615 PF13640 2OG-Fe(II) oxygenase superfamily IX88_RS04615 PF18331 PKHD-type hydroxylase C-terminal domain IX88_RS04620 PF07715 TonB-dependent Receptor Plug Domain IX88_RS04620 PF00593 TonB dependent receptor IX88_RS04625 PF05697 Bacterial trigger factor protein (TF) IX88_RS04625 PF05698 Bacterial trigger factor protein (TF) C-terminus IX88_RS04625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_RS04630 PF00574 Clp protease IX88_RS04635 PF06689 ClpX C4-type zinc finger IX88_RS04635 PF10431 C-terminal, D2-small domain, of ClpB protein IX88_RS04635 PF07724 AAA domain (Cdc48 subfamily) IX88_RS04650 PF05681 Fumarate hydratase (Fumerase) IX88_RS04650 PF05683 Fumarase C-terminus IX88_RS04655 PF07085 DRTGG domain IX88_RS04655 PF01515 Phosphate acetyl/butaryl transferase IX88_RS04660 PF00871 Acetokinase family IX88_RS04665 PF00920 Dehydratase family IX88_RS04670 PF01081 KDPG and KHG aldolase IX88_RS04675 PF02447 GntP family permease IX88_RS04680 PF01202 Shikimate kinase IX88_RS04685 PF00171 Aldehyde dehydrogenase family IX88_RS04690 PF00171 Aldehyde dehydrogenase family IX88_RS04695 PF00561 alpha/beta hydrolase fold IX88_RS04705 PF00933 Glycosyl hydrolase family 3 N terminal domain IX88_RS04710 PF11818 C-terminal domain of tail specific protease (DUF3340) IX88_RS04710 PF03572 Peptidase family S41 IX88_RS04710 PF17804 Tail specific protease N-terminal domain IX88_RS04710 PF00595 PDZ domain IX88_RS04715 PF13439 Glycosyltransferase Family 4 IX88_RS04715 PF00534 Glycosyl transferases group 1 IX88_RS04720 PF01569 PAP2 superfamily IX88_RS04725 PF04384 Iron-sulphur cluster assembly IX88_RS04730 PF00334 Nucleoside diphosphate kinase IX88_RS04735 PF04055 Radical SAM superfamily IX88_RS04745 PF13464 Domain of unknown function (DUF4115) IX88_RS04750 PF04551 GcpE protein IX88_RS04755 PF13393 Histidyl-tRNA synthetase IX88_RS04755 PF03129 Anticodon binding domain IX88_RS04765 PF13360 PQQ-like domain IX88_RS04770 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IX88_RS04770 PF01926 50S ribosome-binding GTPase IX88_RS04780 PF02556 Preprotein translocase subunit SecB IX88_RS04785 PF00462 Glutaredoxin IX88_RS04795 PF03193 RsgA GTPase IX88_RS04800 PF00929 Exonuclease IX88_RS04815 PF02321 Outer membrane efflux protein IX88_RS04820 PF12704 MacB-like periplasmic core domain IX88_RS04820 PF02687 FtsX-like permease family IX88_RS04820 PF00005 ABC transporter IX88_RS04825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_RS04840 PF09334 tRNA synthetases class I (M) IX88_RS04840 PF08264 Anticodon-binding domain of tRNA IX88_RS04840 PF00133 tRNA synthetases class I (I, L, M and V) IX88_RS04840 PF13603 Leucyl-tRNA synthetase, Domain 2 IX88_RS04850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX88_RS04850 PF00205 Thiamine pyrophosphate enzyme, central domain IX88_RS04850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX88_RS04855 PF10369 Small subunit of acetolactate synthase IX88_RS04860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IX88_RS04860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IX88_RS04865 PF03707 Bacterial signalling protein N terminal repeat IX88_RS04865 PF00563 EAL domain IX88_RS04865 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS04875 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS04875 PF03707 Bacterial signalling protein N terminal repeat IX88_RS04875 PF00563 EAL domain IX88_RS04895 PF16658 Class II release factor RF3, C-terminal domain IX88_RS04895 PF03144 Elongation factor Tu domain 2 IX88_RS04895 PF00009 Elongation factor Tu GTP binding domain IX88_RS04910 PF01026 TatD related DNase IX88_RS04915 PF00694 Aconitase C-terminal domain IX88_RS04915 PF00330 Aconitase family (aconitate hydratase) IX88_RS04925 PF00899 ThiF family IX88_RS04930 PF03466 LysR substrate binding domain IX88_RS04930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS04940 PF01207 Dihydrouridine synthase (Dus) IX88_RS04955 PF02463 RecF/RecN/SMC N terminal domain IX88_RS04960 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IX88_RS04965 PF07690 Major Facilitator Superfamily IX88_RS04975 PF00892 EamA-like transporter family IX88_RS04980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IX88_RS04980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IX88_RS04985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IX88_RS04990 PF02233 NAD(P) transhydrogenase beta subunit IX88_RS04995 PF00106 short chain dehydrogenase IX88_RS05005 PF01261 Xylose isomerase-like TIM barrel IX88_RS05010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX88_RS05010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX88_RS05015 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS05020 PF00672 HAMP domain IX88_RS05020 PF00072 Response regulator receiver domain IX88_RS05020 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS05020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IX88_RS05020 PF01627 Hpt domain IX88_RS05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS05025 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS05035 PF05958 tRNA (Uracil-5-)-methyltransferase IX88_RS05040 PF02824 TGS domain IX88_RS05040 PF04607 Region found in RelA / SpoT proteins IX88_RS05040 PF13291 ACT domain IX88_RS05050 PF03819 MazG nucleotide pyrophosphohydrolase domain IX88_RS05060 PF12626 Polymerase A arginine-rich C-terminus IX88_RS05060 PF12627 Probable RNA and SrmB- binding site of polymerase A IX88_RS05060 PF01743 Poly A polymerase head domain IX88_RS05065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IX88_RS05070 PF02548 Ketopantoate hydroxymethyltransferase IX88_RS05075 PF02569 Pantoate-beta-alanine ligase IX88_RS05080 PF03668 P-loop ATPase protein family IX88_RS05085 PF00381 PTS HPr component phosphorylation site IX88_RS05090 PF04751 Protein of unknown function (DUF615) IX88_RS05095 PF13193 AMP-binding enzyme C-terminal domain IX88_RS05095 PF00501 AMP-binding enzyme IX88_RS05100 PF03129 Anticodon binding domain IX88_RS05100 PF02824 TGS domain IX88_RS05100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX88_RS05100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IX88_RS05105 PF00707 Translation initiation factor IF-3, C-terminal domain IX88_RS05105 PF05198 Translation initiation factor IF-3, N-terminal domain IX88_RS05110 PF02798 Glutathione S-transferase, N-terminal domain IX88_RS05110 PF00043 Glutathione S-transferase, C-terminal domain IX88_RS05115 PF09335 SNARE associated Golgi protein IX88_RS05120 PF07690 Major Facilitator Superfamily IX88_RS05125 PF01632 Ribosomal protein L35 IX88_RS05130 PF00453 Ribosomal protein L20 IX88_RS05150 PF01409 tRNA synthetases class II core domain (F) IX88_RS05150 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IX88_RS05155 PF01588 Putative tRNA binding domain IX88_RS05155 PF03147 Ferredoxin-fold anticodon binding domain IX88_RS05155 PF03484 tRNA synthetase B5 domain IX88_RS05155 PF03483 B3/4 domain IX88_RS05155 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IX88_RS05160 PF00216 Bacterial DNA-binding protein IX88_RS05170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IX88_RS05170 PF07497 Rho termination factor, RNA-binding domain IX88_RS05170 PF07498 Rho termination factor, N-terminal domain IX88_RS05175 PF00085 Thioredoxin IX88_RS05180 PF02541 Ppx/GppA phosphatase family IX88_RS05185 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IX88_RS05190 PF01171 PP-loop family IX88_RS05190 PF09179 TilS substrate binding domain IX88_RS05190 PF11734 TilS substrate C-terminal domain IX88_RS05195 PF14748 Pyrroline-5-carboxylate reductase dimerisation IX88_RS05195 PF03807 NADP oxidoreductase coenzyme F420-dependent IX88_RS05200 PF02325 YGGT family IX88_RS05205 PF01612 3'-5' exonuclease IX88_RS05205 PF00476 DNA polymerase family A IX88_RS05205 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IX88_RS05205 PF01367 5'-3' exonuclease, C-terminal SAM fold IX88_RS05225 PF00437 Type II/IV secretion system protein IX88_RS05230 PF02566 OsmC-like protein IX88_RS05235 PF01047 MarR family IX88_RS05245 PF00795 Carbon-nitrogen hydrolase IX88_RS05290 PF04552 Sigma-54, DNA binding domain IX88_RS05290 PF00309 Sigma-54 factor, Activator interacting domain (AID) IX88_RS05290 PF04963 Sigma-54 factor, core binding domain IX88_RS05295 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IX88_RS05300 PF01722 BolA-like protein IX88_RS05305 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IX88_RS05310 PF01634 ATP phosphoribosyltransferase IX88_RS05315 PF00815 Histidinol dehydrogenase IX88_RS05320 PF00155 Aminotransferase class I and II IX88_RS05325 PF04715 Anthranilate synthase component I, N terminal region IX88_RS05325 PF00425 chorismate binding enzyme IX88_RS05380 PF00293 NUDIX domain IX88_RS05385 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS05390 PF00814 Glycoprotease family IX88_RS05395 PF04445 Putative SAM-dependent methyltransferase IX88_RS05405 PF00756 Putative esterase IX88_RS05415 PF00834 Ribulose-phosphate 3 epimerase family IX88_RS05430 PF00394 Multicopper oxidase IX88_RS05430 PF07731 Multicopper oxidase IX88_RS05430 PF07732 Multicopper oxidase IX88_RS05445 PF00893 Small Multidrug Resistance protein IX88_RS05450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX88_RS05450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IX88_RS05455 PF01960 ArgJ family IX88_RS05460 PF02445 Quinolinate synthetase A protein IX88_RS05485 PF00962 Adenosine/AMP deaminase IX88_RS05490 PF00107 Zinc-binding dehydrogenase IX88_RS05490 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS05495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS05495 PF03466 LysR substrate binding domain IX88_RS05500 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS05500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS05500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS05505 PF07690 Major Facilitator Superfamily IX88_RS05510 PF02515 CoA-transferase family III IX88_RS05515 PF17932 Tetracyclin repressor-like, C-terminal domain IX88_RS05515 PF00440 Bacterial regulatory proteins, tetR family IX88_RS05530 PF00890 FAD binding domain IX88_RS05530 PF14537 Cytochrome c3 IX88_RS05535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS05535 PF03466 LysR substrate binding domain IX88_RS05545 PF07690 Major Facilitator Superfamily IX88_RS05550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS05550 PF03466 LysR substrate binding domain IX88_RS05555 PF01810 LysE type translocator IX88_RS05560 PF03466 LysR substrate binding domain IX88_RS05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS05570 PF08267 Cobalamin-independent synthase, N-terminal domain IX88_RS05570 PF01717 Cobalamin-independent synthase, Catalytic domain IX88_RS05575 PF01613 Flavin reductase like domain IX88_RS05625 PF02567 Phenazine biosynthesis-like protein IX88_RS05635 PF00268 Ribonucleotide reductase, small chain IX88_RS05645 PF03477 ATP cone domain IX88_RS05645 PF02867 Ribonucleotide reductase, barrel domain IX88_RS05645 PF00317 Ribonucleotide reductase, all-alpha domain IX88_RS05655 PF00072 Response regulator receiver domain IX88_RS05655 PF00486 Transcriptional regulatory protein, C terminal IX88_RS05660 PF00672 HAMP domain IX88_RS05660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS05660 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS05670 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS05670 PF17151 Periplasmic sensor domain IX88_RS05675 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IX88_RS05680 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IX88_RS05685 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IX88_RS05685 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IX88_RS05695 PF10531 SLBB domain IX88_RS05695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IX88_RS05695 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IX88_RS05700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX88_RS05700 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IX88_RS05700 PF00384 Molybdopterin oxidoreductase IX88_RS05705 PF00146 NADH dehydrogenase IX88_RS05710 PF12838 4Fe-4S dicluster domain IX88_RS05715 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IX88_RS05720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IX88_RS05725 PF00361 Proton-conducting membrane transporter IX88_RS05725 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IX88_RS05730 PF00361 Proton-conducting membrane transporter IX88_RS05735 PF00361 Proton-conducting membrane transporter IX88_RS05745 PF00313 'Cold-shock' DNA-binding domain IX88_RS05755 PF03466 LysR substrate binding domain IX88_RS05755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS05760 PF00970 Oxidoreductase FAD-binding domain IX88_RS05760 PF00175 Oxidoreductase NAD-binding domain IX88_RS05775 PF05552 Conserved TM helix IX88_RS05790 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS05795 PF13533 Biotin-lipoyl like IX88_RS05820 PF01588 Putative tRNA binding domain IX88_RS05820 PF09334 tRNA synthetases class I (M) IX88_RS05830 PF10609 NUBPL iron-transfer P-loop NTPase IX88_RS05835 PF01048 Phosphorylase superfamily IX88_RS05850 PF00692 dUTPase IX88_RS05880 PF01207 Dihydrouridine synthase (Dus) IX88_RS05890 PF02978 Signal peptide binding domain IX88_RS05890 PF02881 SRP54-type protein, helical bundle domain IX88_RS05890 PF00448 SRP54-type protein, GTPase domain IX88_RS05895 PF03309 Type III pantothenate kinase IX88_RS05905 PF01925 Sulfite exporter TauE/SafE IX88_RS05915 PF06470 SMC proteins Flexible Hinge Domain IX88_RS05915 PF02463 RecF/RecN/SMC N terminal domain IX88_RS05925 PF00533 BRCA1 C Terminus (BRCT) domain IX88_RS05925 PF01653 NAD-dependent DNA ligase adenylation domain IX88_RS05925 PF03120 NAD-dependent DNA ligase OB-fold domain IX88_RS05925 PF12826 Helix-hairpin-helix motif IX88_RS05925 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IX88_RS05930 PF00210 Ferritin-like domain IX88_RS05935 PF07690 Major Facilitator Superfamily IX88_RS05940 PF00982 Glycosyltransferase family 20 IX88_RS05945 PF02358 Trehalose-phosphatase IX88_RS05950 PF08241 Methyltransferase domain IX88_RS05950 PF12697 Alpha/beta hydrolase family IX88_RS05955 PF06968 Biotin and Thiamin Synthesis associated domain IX88_RS05955 PF00202 Aminotransferase class-III IX88_RS05955 PF04055 Radical SAM superfamily IX88_RS05960 PF00155 Aminotransferase class I and II IX88_RS05975 PF00849 RNA pseudouridylate synthase IX88_RS05975 PF01479 S4 domain IX88_RS05980 PF04079 Segregation and condensation complex subunit ScpB IX88_RS05985 PF02616 Segregation and condensation protein ScpA IX88_RS05990 PF01300 Telomere recombination IX88_RS05995 PF04315 Elongation factor P hydroxylase IX88_RS06000 PF02620 Large ribosomal RNA subunit accumulation protein YceD IX88_RS06005 PF01783 Ribosomal L32p protein family IX88_RS06010 PF00698 Acyl transferase domain IX88_RS06020 PF00550 Phosphopantetheine attachment site IX88_RS06025 PF04972 BON domain IX88_RS06025 PF01476 LysM domain IX88_RS06030 PF03070 TENA/THI-4/PQQC family IX88_RS06030 PF02581 Thiamine monophosphate synthase IX88_RS06030 PF08543 Phosphomethylpyrimidine kinase IX88_RS06040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IX88_RS06055 PF02261 Aspartate decarboxylase IX88_RS06060 PF01195 Peptidyl-tRNA hydrolase IX88_RS06065 PF01386 Ribosomal L25p family IX88_RS06070 PF14572 Phosphoribosyl synthetase-associated domain IX88_RS06070 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IX88_RS06095 PF00288 GHMP kinases N terminal domain IX88_RS06095 PF08544 GHMP kinases C terminal IX88_RS06100 PF03550 Outer membrane lipoprotein LolB IX88_RS06110 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IX88_RS06110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IX88_RS06110 PF01488 Shikimate / quinate 5-dehydrogenase IX88_RS06115 PF08278 DNA primase DnaG DnaB-binding IX88_RS06115 PF01807 CHC2 zinc finger IX88_RS06115 PF08275 DNA primase catalytic core, N-terminal domain IX88_RS06115 PF10410 DnaB-helicase binding domain of primase IX88_RS06120 PF13525 Outer membrane lipoprotein IX88_RS06125 PF00849 RNA pseudouridylate synthase IX88_RS06125 PF01479 S4 domain IX88_RS06130 PF02578 Multi-copper polyphenol oxidoreductase laccase IX88_RS06135 PF03358 NADPH-dependent FMN reductase IX88_RS06140 PF01668 SmpB protein IX88_RS06145 PF01467 Cytidylyltransferase-like IX88_RS06150 PF00037 4Fe-4S binding domain IX88_RS06165 PF03466 LysR substrate binding domain IX88_RS06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS06170 PF00180 Isocitrate/isopropylmalate dehydrogenase IX88_RS06175 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_RS06180 PF07859 alpha/beta hydrolase fold IX88_RS06185 PF00355 Rieske [2Fe-2S] domain IX88_RS06185 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_RS06190 PF00171 Aldehyde dehydrogenase family IX88_RS06195 PF00175 Oxidoreductase NAD-binding domain IX88_RS06195 PF00970 Oxidoreductase FAD-binding domain IX88_RS06195 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS06210 PF02540 NAD synthase IX88_RS06210 PF00795 Carbon-nitrogen hydrolase IX88_RS06220 PF02678 Pirin IX88_RS06220 PF05726 Pirin C-terminal cupin domain IX88_RS06225 PF03653 Uncharacterised protein family (UPF0093) IX88_RS06230 PF02801 Beta-ketoacyl synthase, C-terminal domain IX88_RS06230 PF00109 Beta-ketoacyl synthase, N-terminal domain IX88_RS06240 PF00164 Ribosomal protein S12/S23 IX88_RS06245 PF00177 Ribosomal protein S7p/S5e IX88_RS06250 PF00009 Elongation factor Tu GTP binding domain IX88_RS06250 PF14492 Elongation Factor G, domain II IX88_RS06250 PF03764 Elongation factor G, domain IV IX88_RS06250 PF03144 Elongation factor Tu domain 2 IX88_RS06250 PF00679 Elongation factor G C-terminus IX88_RS06255 PF03144 Elongation factor Tu domain 2 IX88_RS06255 PF03143 Elongation factor Tu C-terminal domain IX88_RS06255 PF00009 Elongation factor Tu GTP binding domain IX88_RS06270 PF00583 Acetyltransferase (GNAT) family IX88_RS06275 PF04377 Arginine-tRNA-protein transferase, C terminus IX88_RS06275 PF04376 Arginine-tRNA-protein transferase, N terminus IX88_RS06280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IX88_RS06285 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS06290 PF17854 FtsK alpha domain IX88_RS06290 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IX88_RS06290 PF09397 Ftsk gamma domain IX88_RS06290 PF01580 FtsK/SpoIIIE family IX88_RS06295 PF01810 LysE type translocator IX88_RS06305 PF03776 Septum formation topological specificity factor MinE IX88_RS06310 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IX88_RS06315 PF03775 Septum formation inhibitor MinC, C-terminal domain IX88_RS06325 PF01553 Acyltransferase IX88_RS06330 PF00691 OmpA family IX88_RS06330 PF13488 Glycine zipper IX88_RS06335 PF00580 UvrD/REP helicase N-terminal domain IX88_RS06335 PF13361 UvrD-like helicase C-terminal domain IX88_RS06340 PF00692 dUTPase IX88_RS06345 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IX88_RS06345 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IX88_RS06345 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IX88_RS06345 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IX88_RS06350 PF00696 Amino acid kinase family IX88_RS06360 PF13230 Glutamine amidotransferases class-II IX88_RS06365 PF01814 Hemerythrin HHE cation binding domain IX88_RS06375 PF03658 RnfH family Ubiquitin IX88_RS06380 PF04355 SmpA / OmlA family IX88_RS06385 PF01475 Ferric uptake regulator family IX88_RS06390 PF00437 Type II/IV secretion system protein IX88_RS06395 PF00437 Type II/IV secretion system protein IX88_RS06400 PF01168 Alanine racemase, N-terminal domain IX88_RS06410 PF12320 Type 5 capsule protein repressor C-terminal domain IX88_RS06410 PF00149 Calcineurin-like phosphoesterase IX88_RS06430 PF08338 Domain of unknown function (DUF1731) IX88_RS06430 PF01370 NAD dependent epimerase/dehydratase family IX88_RS06435 PF01266 FAD dependent oxidoreductase IX88_RS06440 PF00490 Delta-aminolevulinic acid dehydratase IX88_RS06445 PF03061 Thioesterase superfamily IX88_RS06450 PF13533 Biotin-lipoyl like IX88_RS06455 PF07690 Major Facilitator Superfamily IX88_RS06465 PF12161 HsdM N-terminal domain IX88_RS06465 PF02384 N-6 DNA Methylase IX88_RS06485 PF04851 Type III restriction enzyme, res subunit IX88_RS06485 PF00271 Helicase conserved C-terminal domain IX88_RS06485 PF08463 EcoEI R protein C-terminal IX88_RS06485 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IX88_RS06515 PF00083 Sugar (and other) transporter IX88_RS06520 PF00701 Dihydrodipicolinate synthetase family IX88_RS06550 PF13520 Amino acid permease IX88_RS06555 PF02574 Homocysteine S-methyltransferase IX88_RS06565 PF06039 Malate:quinone oxidoreductase (Mqo) IX88_RS06570 PF05199 GMC oxidoreductase IX88_RS06570 PF00732 GMC oxidoreductase IX88_RS06575 PF00171 Aldehyde dehydrogenase family IX88_RS06580 PF13977 BetI-type transcriptional repressor, C-terminal IX88_RS06580 PF00440 Bacterial regulatory proteins, tetR family IX88_RS06585 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_RS06590 PF02028 BCCT, betaine/carnitine/choline family transporter IX88_RS06600 PF03061 Thioesterase superfamily IX88_RS06610 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX88_RS06610 PF07683 Cobalamin synthesis protein cobW C-terminal domain IX88_RS06615 PF00375 Sodium:dicarboxylate symporter family IX88_RS06620 PF07152 YaeQ protein IX88_RS06625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_RS06630 PF01522 Polysaccharide deacetylase IX88_RS06630 PF14883 Hypothetical glycosyl hydrolase family 13 IX88_RS06635 PF00535 Glycosyl transferase family 2 IX88_RS06645 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS06660 PF09339 IclR helix-turn-helix domain IX88_RS06660 PF01614 Bacterial transcriptional regulator IX88_RS06665 PF00355 Rieske [2Fe-2S] domain IX88_RS06675 PF00355 Rieske [2Fe-2S] domain IX88_RS06685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_RS06690 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS06690 PF14759 Reductase C-terminal IX88_RS06695 PF07690 Major Facilitator Superfamily IX88_RS06705 PF12697 Alpha/beta hydrolase family IX88_RS06715 PF01958 Domain of unknown function DUF108 IX88_RS06715 PF03447 Homoserine dehydrogenase, NAD binding domain IX88_RS06720 PF00171 Aldehyde dehydrogenase family IX88_RS06725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX88_RS06725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX88_RS06725 PF00205 Thiamine pyrophosphate enzyme, central domain IX88_RS06735 PF07690 Major Facilitator Superfamily IX88_RS06740 PF01327 Polypeptide deformylase IX88_RS06745 PF04960 Glutaminase IX88_RS06750 PF02311 AraC-like ligand binding domain IX88_RS06750 PF12833 Helix-turn-helix domain IX88_RS06755 PF07690 Major Facilitator Superfamily IX88_RS06760 PF01263 Aldose 1-epimerase IX88_RS06770 PF03466 LysR substrate binding domain IX88_RS06770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS06780 PF07690 Major Facilitator Superfamily IX88_RS06785 PF00456 Transketolase, thiamine diphosphate binding domain IX88_RS06790 PF02780 Transketolase, C-terminal domain IX88_RS06790 PF02779 Transketolase, pyrimidine binding domain IX88_RS06800 PF02574 Homocysteine S-methyltransferase IX88_RS06800 PF02310 B12 binding domain IX88_RS06800 PF02607 B12 binding domain IX88_RS06800 PF00809 Pterin binding enzyme IX88_RS06800 PF02965 Vitamin B12 dependent methionine synthase, activation domain IX88_RS06805 PF01384 Phosphate transporter family IX88_RS06810 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS06825 PF03781 Sulfatase-modifying factor enzyme 1 IX88_RS06830 PF00884 Sulfatase IX88_RS06840 PF01521 Iron-sulphur cluster biosynthesis IX88_RS06840 PF01106 NifU-like domain IX88_RS06845 PF00593 TonB dependent receptor IX88_RS06845 PF07715 TonB-dependent Receptor Plug Domain IX88_RS06855 PF00561 alpha/beta hydrolase fold IX88_RS06860 PF00484 Carbonic anhydrase IX88_RS06865 PF13472 GDSL-like Lipase/Acylhydrolase family IX88_RS06870 PF00005 ABC transporter IX88_RS06880 PF01694 Rhomboid family IX88_RS06885 PF00912 Transglycosylase IX88_RS06890 PF13090 Polyphosphate kinase C-terminal domain 2 IX88_RS06890 PF17941 Polyphosphate kinase C-terminal domain 1 IX88_RS06890 PF02503 Polyphosphate kinase middle domain IX88_RS06890 PF13089 Polyphosphate kinase N-terminal domain IX88_RS06900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS06900 PF03466 LysR substrate binding domain IX88_RS06905 PF00561 alpha/beta hydrolase fold IX88_RS06910 PF18113 Rubredoxin binding C-terminal domain IX88_RS06910 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS06915 PF00301 Rubredoxin IX88_RS06930 PF00152 tRNA synthetases class II (D, K and N) IX88_RS06930 PF01336 OB-fold nucleic acid binding domain IX88_RS06935 PF14052 Capsule assembly protein Wzi IX88_RS06940 PF01507 Phosphoadenosine phosphosulfate reductase family IX88_RS06945 PF00009 Elongation factor Tu GTP binding domain IX88_RS06960 PF03600 Citrate transporter IX88_RS06965 PF01595 Cyclin M transmembrane N-terminal domain IX88_RS06965 PF00571 CBS domain IX88_RS06965 PF03471 Transporter associated domain IX88_RS06970 PF03466 LysR substrate binding domain IX88_RS06970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS06975 PF00463 Isocitrate lyase family IX88_RS06990 PF01774 UreD urease accessory protein IX88_RS06995 PF00547 Urease, gamma subunit IX88_RS07000 PF00699 Urease beta subunit IX88_RS07005 PF01979 Amidohydrolase family IX88_RS07005 PF00449 Urease alpha-subunit, N-terminal domain IX88_RS07010 PF05194 UreE urease accessory protein, C-terminal domain IX88_RS07010 PF02814 UreE urease accessory protein, N-terminal domain IX88_RS07015 PF01730 UreF IX88_RS07020 PF02492 CobW/HypB/UreG, nucleotide-binding domain IX88_RS07035 PF00905 Penicillin binding protein transpeptidase domain IX88_RS07035 PF03717 Penicillin-binding Protein dimerisation domain IX88_RS07050 PF05191 Adenylate kinase, active site lid IX88_RS07055 PF00633 Helix-hairpin-helix motif IX88_RS07055 PF00730 HhH-GPD superfamily base excision DNA repair protein IX88_RS07055 PF10576 Iron-sulfur binding domain of endonuclease III IX88_RS07060 PF04060 Putative Fe-S cluster IX88_RS07065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IX88_RS07065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_RS07075 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IX88_RS07080 PF02590 Predicted SPOUT methyltransferase IX88_RS07085 PF02190 ATP-dependent protease La (LON) substrate-binding domain IX88_RS07085 PF05362 Lon protease (S16) C-terminal proteolytic domain IX88_RS07085 PF00004 ATPase family associated with various cellular activities (AAA) IX88_RS07090 PF03895 YadA-like membrane anchor domain IX88_RS07090 PF05662 Coiled stalk of trimeric autotransporter adhesin IX88_RS07090 PF05658 Head domain of trimeric autotransporter adhesin IX88_RS07090 PF13018 Extended Signal Peptide of Type V secretion system IX88_RS07095 PF00691 OmpA family IX88_RS07095 PF04355 SmpA / OmlA family IX88_RS07100 PF05658 Head domain of trimeric autotransporter adhesin IX88_RS07100 PF03895 YadA-like membrane anchor domain IX88_RS07100 PF05658 Head domain of trimeric autotransporter adhesin IX88_RS07100 PF13018 Extended Signal Peptide of Type V secretion system IX88_RS07100 PF13018 Extended Signal Peptide of Type V secretion system IX88_RS07100 PF03895 YadA-like membrane anchor domain IX88_RS07100 PF05662 Coiled stalk of trimeric autotransporter adhesin IX88_RS07100 PF05662 Coiled stalk of trimeric autotransporter adhesin IX88_RS07105 PF00691 OmpA family IX88_RS07105 PF04355 SmpA / OmlA family IX88_RS07110 PF01812 5-formyltetrahydrofolate cyclo-ligase family IX88_RS07140 PF05195 Aminopeptidase P, N-terminal domain IX88_RS07140 PF00557 Metallopeptidase family M24 IX88_RS07145 PF01494 FAD binding domain IX88_RS07150 PF01494 FAD binding domain IX88_RS07160 PF13411 MerR HTH family regulatory protein IX88_RS07170 PF01810 LysE type translocator IX88_RS07175 PF03466 LysR substrate binding domain IX88_RS07175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS07185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IX88_RS07190 PF02021 Uncharacterised protein family UPF0102 IX88_RS07195 PF04972 BON domain IX88_RS07205 PF09297 NADH pyrophosphatase zinc ribbon domain IX88_RS07205 PF00293 NUDIX domain IX88_RS07215 PF00929 Exonuclease IX88_RS07220 PF01464 Transglycosylase SLT domain IX88_RS07220 PF01476 LysM domain IX88_RS07220 PF01476 LysM domain IX88_RS07220 PF01464 Transglycosylase SLT domain IX88_RS07225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IX88_RS07230 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS07235 PF12911 N-terminal TM domain of oligopeptide transport permease C IX88_RS07235 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS07240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IX88_RS07240 PF00005 ABC transporter IX88_RS07245 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS07245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_RS07260 PF07715 TonB-dependent Receptor Plug Domain IX88_RS07260 PF00593 TonB dependent receptor IX88_RS07270 PF00929 Exonuclease IX88_RS07275 PF01979 Amidohydrolase family IX88_RS07280 PF00563 EAL domain IX88_RS07280 PF01590 GAF domain IX88_RS07280 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS07280 PF00360 Phytochrome region IX88_RS07285 PF00764 Arginosuccinate synthase IX88_RS07290 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_RS07290 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS07300 PF00589 Phage integrase family IX88_RS07300 PF13356 Arm DNA-binding domain IX88_RS07330 PF00872 Transposase, Mutator family IX88_RS07380 PF13411 MerR HTH family regulatory protein IX88_RS07390 PF01252 Signal peptidase (SPase) II IX88_RS07400 PF09278 MerR, DNA binding IX88_RS07400 PF00376 MerR family regulatory protein IX88_RS07405 PF02411 MerT mercuric transport protein IX88_RS07415 PF03203 MerC mercury resistance protein IX88_RS07420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_RS07420 PF00403 Heavy-metal-associated domain IX88_RS07420 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS07425 PF13411 MerR HTH family regulatory protein IX88_RS07435 PF02661 Fic/DOC family IX88_RS07440 PF02384 N-6 DNA Methylase IX88_RS07445 PF01420 Type I restriction modification DNA specificity domain IX88_RS07465 PF00440 Bacterial regulatory proteins, tetR family IX88_RS07470 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IX88_RS07470 PF13296 Putative type VI secretion system Rhs element Vgr IX88_RS07470 PF04717 Type VI secretion system, phage-baseplate injector IX88_RS07475 PF03180 NLPA lipoprotein IX88_RS07495 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IX88_RS07495 PF04717 Type VI secretion system, phage-baseplate injector IX88_RS07495 PF13296 Putative type VI secretion system Rhs element Vgr IX88_RS07500 PF05593 RHS Repeat IX88_RS07500 PF03527 RHS protein IX88_RS07550 PF00324 Amino acid permease IX88_RS07555 PF01266 FAD dependent oxidoreductase IX88_RS07560 PF00324 Amino acid permease IX88_RS07570 PF00392 Bacterial regulatory proteins, gntR family IX88_RS07570 PF07729 FCD domain IX88_RS07580 PF00171 Aldehyde dehydrogenase family IX88_RS07590 PF00202 Aminotransferase class-III IX88_RS07595 PF04958 Arginine N-succinyltransferase beta subunit IX88_RS07600 PF00324 Amino acid permease IX88_RS07605 PF00171 Aldehyde dehydrogenase family IX88_RS07610 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX88_RS07610 PF12833 Helix-turn-helix domain IX88_RS07615 PF00892 EamA-like transporter family IX88_RS07620 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IX88_RS07620 PF08666 SAF domain IX88_RS07625 PF07690 Major Facilitator Superfamily IX88_RS07630 PF13378 Enolase C-terminal domain-like IX88_RS07635 PF00701 Dihydrodipicolinate synthetase family IX88_RS07640 PF00171 Aldehyde dehydrogenase family IX88_RS07645 PF00392 Bacterial regulatory proteins, gntR family IX88_RS07645 PF07729 FCD domain IX88_RS07650 PF07519 Tannase and feruloyl esterase IX88_RS07665 PF03573 outer membrane porin, OprD family IX88_RS07670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS07670 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS07670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS07680 PF00171 Aldehyde dehydrogenase family IX88_RS07685 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS07690 PF07690 Major Facilitator Superfamily IX88_RS07705 PF00175 Oxidoreductase NAD-binding domain IX88_RS07705 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS07710 PF00355 Rieske [2Fe-2S] domain IX88_RS07715 PF07690 Major Facilitator Superfamily IX88_RS07720 PF03573 outer membrane porin, OprD family IX88_RS07725 PF05199 GMC oxidoreductase IX88_RS07730 PF07859 alpha/beta hydrolase fold IX88_RS07735 PF00106 short chain dehydrogenase IX88_RS07740 PF00743 Flavin-binding monooxygenase-like IX88_RS07745 PF12833 Helix-turn-helix domain IX88_RS07745 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX88_RS07750 PF04072 Leucine carboxyl methyltransferase IX88_RS07755 PF00743 Flavin-binding monooxygenase-like IX88_RS07760 PF00106 short chain dehydrogenase IX88_RS07770 PF17932 Tetracyclin repressor-like, C-terminal domain IX88_RS07770 PF00440 Bacterial regulatory proteins, tetR family IX88_RS07775 PF17954 Quercetinase C-terminal cupin domain IX88_RS07775 PF02678 Pirin IX88_RS07785 PF00106 short chain dehydrogenase IX88_RS07790 PF00743 Flavin-binding monooxygenase-like IX88_RS07800 PF00860 Permease family IX88_RS07805 PF00962 Adenosine/AMP deaminase IX88_RS07810 PF01292 Prokaryotic cytochrome b561 IX88_RS07820 PF01351 Ribonuclease HII IX88_RS07825 PF02599 Global regulator protein family IX88_RS07830 PF13840 ACT domain IX88_RS07830 PF01842 ACT domain IX88_RS07830 PF00696 Amino acid kinase family IX88_RS07835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IX88_RS07835 PF02272 DHHA1 domain IX88_RS07835 PF01411 tRNA synthetases class II (A) IX88_RS07840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IX88_RS07840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_RS07845 PF13393 Histidyl-tRNA synthetase IX88_RS07850 PF00709 Adenylosuccinate synthetase IX88_RS07865 PF00248 Aldo/keto reductase family IX88_RS07870 PF13545 Crp-like helix-turn-helix domain IX88_RS07870 PF00027 Cyclic nucleotide-binding domain IX88_RS07875 PF02566 OsmC-like protein IX88_RS07890 PF17871 AAA lid domain IX88_RS07890 PF07724 AAA domain (Cdc48 subfamily) IX88_RS07890 PF02861 Clp amino terminal domain, pathogenicity island component IX88_RS07890 PF10431 C-terminal, D2-small domain, of ClpB protein IX88_RS07890 PF00004 ATPase family associated with various cellular activities (AAA) IX88_RS07905 PF02926 THUMP domain IX88_RS07905 PF10672 S-adenosylmethionine-dependent methyltransferase IX88_RS07905 PF01170 Putative RNA methylase family UPF0020 IX88_RS07915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IX88_RS07915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IX88_RS07920 PF01979 Amidohydrolase family IX88_RS07925 PF13488 Glycine zipper IX88_RS07925 PF00691 OmpA family IX88_RS07935 PF13417 Glutathione S-transferase, N-terminal domain IX88_RS07935 PF00043 Glutathione S-transferase, C-terminal domain IX88_RS07940 PF02390 Putative methyltransferase IX88_RS07950 PF00043 Glutathione S-transferase, C-terminal domain IX88_RS07950 PF02798 Glutathione S-transferase, N-terminal domain IX88_RS07960 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS07960 PF13192 Thioredoxin domain IX88_RS07980 PF00578 AhpC/TSA family IX88_RS07980 PF10417 C-terminal domain of 1-Cys peroxiredoxin IX88_RS07985 PF11898 Domain of unknown function (DUF3418) IX88_RS07985 PF04408 Helicase associated domain (HA2) IX88_RS07985 PF00271 Helicase conserved C-terminal domain IX88_RS07985 PF00270 DEAD/DEAH box helicase IX88_RS07985 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IX88_RS07990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IX88_RS07990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IX88_RS08000 PF07690 Major Facilitator Superfamily IX88_RS08005 PF03594 Benzoate membrane transport protein IX88_RS08010 PF00106 short chain dehydrogenase IX88_RS08015 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS08015 PF00175 Oxidoreductase NAD-binding domain IX88_RS08015 PF00970 Oxidoreductase FAD-binding domain IX88_RS08020 PF00866 Ring hydroxylating beta subunit IX88_RS08025 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_RS08025 PF00355 Rieske [2Fe-2S] domain IX88_RS08030 PF03466 LysR substrate binding domain IX88_RS08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08040 PF00403 Heavy-metal-associated domain IX88_RS08045 PF00376 MerR family regulatory protein IX88_RS08045 PF09278 MerR, DNA binding IX88_RS08080 PF02601 Exonuclease VII, large subunit IX88_RS08080 PF13742 OB-fold nucleic acid binding domain IX88_RS08115 PF01810 LysE type translocator IX88_RS08120 PF00313 'Cold-shock' DNA-binding domain IX88_RS08130 PF14748 Pyrroline-5-carboxylate reductase dimerisation IX88_RS08130 PF03807 NADP oxidoreductase coenzyme F420-dependent IX88_RS08150 PF07690 Major Facilitator Superfamily IX88_RS08155 PF01638 HxlR-like helix-turn-helix IX88_RS08190 PF01406 tRNA synthetases class I (C) catalytic domain IX88_RS08190 PF09190 DALR domain IX88_RS08195 PF01380 SIS domain IX88_RS08195 PF00571 CBS domain IX88_RS08210 PF03968 OstA-like protein IX88_RS08215 PF12399 Branched-chain amino acid ATP-binding cassette transporter IX88_RS08215 PF00005 ABC transporter IX88_RS08220 PF02321 Outer membrane efflux protein IX88_RS08225 PF03412 Peptidase C39 family IX88_RS08225 PF00664 ABC transporter transmembrane region IX88_RS08225 PF00005 ABC transporter IX88_RS08235 PF01205 Uncharacterized protein family UPF0029 IX88_RS08240 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS08250 PF01596 O-methyltransferase IX88_RS08260 PF00037 4Fe-4S binding domain IX88_RS08260 PF11953 Domain of unknown function (DUF3470) IX88_RS08270 PF01624 MutS domain I IX88_RS08270 PF00488 MutS domain V IX88_RS08270 PF05190 MutS family domain IV IX88_RS08270 PF05192 MutS domain III IX88_RS08270 PF05188 MutS domain II IX88_RS08275 PF01037 Lrp/AsnC ligand binding domain IX88_RS08280 PF00892 EamA-like transporter family IX88_RS08285 PF03707 Bacterial signalling protein N terminal repeat IX88_RS08285 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS08285 PF00563 EAL domain IX88_RS08290 PF03279 Bacterial lipid A biosynthesis acyltransferase IX88_RS08300 PF07690 Major Facilitator Superfamily IX88_RS08320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_RS08320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_RS08340 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IX88_RS08340 PF04717 Type VI secretion system, phage-baseplate injector IX88_RS08340 PF13296 Putative type VI secretion system Rhs element Vgr IX88_RS08345 PF05593 RHS Repeat IX88_RS08345 PF03527 RHS protein IX88_RS08370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08370 PF03466 LysR substrate binding domain IX88_RS08375 PF01566 Natural resistance-associated macrophage protein IX88_RS08380 PF03746 LamB/YcsF family IX88_RS08385 PF07286 Protein of unknown function (DUF1445) IX88_RS08395 PF02785 Biotin carboxylase C-terminal domain IX88_RS08395 PF00289 Biotin carboxylase, N-terminal domain IX88_RS08395 PF00364 Biotin-requiring enzyme IX88_RS08395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_RS08400 PF00654 Voltage gated chloride channel IX88_RS08405 PF08479 POTRA domain, ShlB-type IX88_RS08405 PF17287 POTRA domain IX88_RS08405 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IX88_RS08410 PF13018 Extended Signal Peptide of Type V secretion system IX88_RS08410 PF13332 Hemagglutinin repeat IX88_RS08410 PF04829 Pre-toxin domain with VENN motif IX88_RS08410 PF05860 haemagglutination activity domain IX88_RS08430 PF13737 Transposase DDE domain IX88_RS08455 PF12833 Helix-turn-helix domain IX88_RS08455 PF06719 AraC-type transcriptional regulator N-terminus IX88_RS08470 PF02515 CoA-transferase family III IX88_RS08475 PF00682 HMGL-like IX88_RS08480 PF07690 Major Facilitator Superfamily IX88_RS08485 PF00199 Catalase IX88_RS08490 PF01292 Prokaryotic cytochrome b561 IX88_RS08495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08495 PF03466 LysR substrate binding domain IX88_RS08500 PF02525 Flavodoxin-like fold IX88_RS08505 PF09339 IclR helix-turn-helix domain IX88_RS08505 PF01614 Bacterial transcriptional regulator IX88_RS08510 PF01494 FAD binding domain IX88_RS08515 PF07702 UTRA domain IX88_RS08515 PF00392 Bacterial regulatory proteins, gntR family IX88_RS08525 PF00005 ABC transporter IX88_RS08525 PF08402 TOBE domain IX88_RS08535 PF01266 FAD dependent oxidoreductase IX88_RS08540 PF00266 Aminotransferase class-V IX88_RS08545 PF13419 Haloacid dehalogenase-like hydrolase IX88_RS08550 PF07690 Major Facilitator Superfamily IX88_RS08555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS08555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS08555 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS08560 PF02515 CoA-transferase family III IX88_RS08565 PF09339 IclR helix-turn-helix domain IX88_RS08570 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS08575 PF03060 Nitronate monooxygenase IX88_RS08580 PF07690 Major Facilitator Superfamily IX88_RS08585 PF09339 IclR helix-turn-helix domain IX88_RS08590 PF00108 Thiolase, N-terminal domain IX88_RS08590 PF02803 Thiolase, C-terminal domain IX88_RS08595 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain IX88_RS08595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_RS08595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_RS08605 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS08610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS08610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS08610 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS08615 PF07690 Major Facilitator Superfamily IX88_RS08620 PF01144 Coenzyme A transferase IX88_RS08625 PF01144 Coenzyme A transferase IX88_RS08635 PF07690 Major Facilitator Superfamily IX88_RS08645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS08645 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS08645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS08645 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_RS08660 PF03466 LysR substrate binding domain IX88_RS08660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08665 PF00682 HMGL-like IX88_RS08670 PF00289 Biotin carboxylase, N-terminal domain IX88_RS08670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_RS08670 PF02785 Biotin carboxylase C-terminal domain IX88_RS08670 PF18140 Propionyl-coenzyme A carboxylase BT domain IX88_RS08670 PF00364 Biotin-requiring enzyme IX88_RS08675 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS08680 PF01039 Carboxyl transferase domain IX88_RS08685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS08685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS08685 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS08690 PF00440 Bacterial regulatory proteins, tetR family IX88_RS08695 PF00501 AMP-binding enzyme IX88_RS08695 PF13193 AMP-binding enzyme C-terminal domain IX88_RS08715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08715 PF03466 LysR substrate binding domain IX88_RS08750 PF00994 Probable molybdopterin binding domain IX88_RS08750 PF18146 Damage-inducible protein CinA KH domain IX88_RS08750 PF02464 Competence-damaged protein IX88_RS08760 PF00199 Catalase IX88_RS08760 PF18011 C-terminal domain found in long catalases IX88_RS08760 PF06628 Catalase-related immune-responsive IX88_RS08785 PF00717 Peptidase S24-like IX88_RS08795 PF13404 AsnC-type helix-turn-helix domain IX88_RS08795 PF01037 Lrp/AsnC ligand binding domain IX88_RS08805 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS08805 PF09308 LuxQ, periplasmic IX88_RS08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS08805 PF00072 Response regulator receiver domain IX88_RS08810 PF00072 Response regulator receiver domain IX88_RS08820 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS08825 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS08830 PF00005 ABC transporter IX88_RS08835 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX88_RS08840 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX88_RS08845 PF03466 LysR substrate binding domain IX88_RS08845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08850 PF01810 LysE type translocator IX88_RS08855 PF00266 Aminotransferase class-V IX88_RS08865 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS08870 PF00581 Rhodanese-like domain IX88_RS08880 PF03466 LysR substrate binding domain IX88_RS08880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08885 PF02798 Glutathione S-transferase, N-terminal domain IX88_RS08890 PF14834 Glutathione S-transferase, C-terminal domain IX88_RS08890 PF02798 Glutathione S-transferase, N-terminal domain IX88_RS08895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08895 PF03466 LysR substrate binding domain IX88_RS08900 PF03788 LrgA family IX88_RS08905 PF04172 LrgB-like family IX88_RS08910 PF00155 Aminotransferase class I and II IX88_RS08910 PF00392 Bacterial regulatory proteins, gntR family IX88_RS08925 PF07690 Major Facilitator Superfamily IX88_RS08935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08935 PF03466 LysR substrate binding domain IX88_RS08940 PF16957 Malonate decarboxylase, alpha subunit, transporter IX88_RS08945 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase IX88_RS08950 PF06857 Malonate decarboxylase delta subunit (MdcD) IX88_RS08955 PF01039 Carboxyl transferase domain IX88_RS08965 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG IX88_RS08970 PF00698 Acyl transferase domain IX88_RS08985 PF03466 LysR substrate binding domain IX88_RS08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS08990 PF00392 Bacterial regulatory proteins, gntR family IX88_RS08990 PF00155 Aminotransferase class I and II IX88_RS09000 PF02322 Cytochrome bd terminal oxidase subunit II IX88_RS09005 PF01654 Cytochrome bd terminal oxidase subunit I IX88_RS09020 PF00296 Luciferase-like monooxygenase IX88_RS09025 PF00083 Sugar (and other) transporter IX88_RS09035 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IX88_RS09040 PF00005 ABC transporter IX88_RS09045 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS09050 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IX88_RS09055 PF01177 Asp/Glu/Hydantoin racemase IX88_RS09060 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IX88_RS09070 PF03466 LysR substrate binding domain IX88_RS09070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS09080 PF13382 Adenine deaminase C-terminal domain IX88_RS09080 PF01979 Amidohydrolase family IX88_RS09090 PF03960 ArsC family IX88_RS09095 PF01022 Bacterial regulatory protein, arsR family IX88_RS09100 PF01758 Sodium Bile acid symporter family IX88_RS09105 PF03466 LysR substrate binding domain IX88_RS09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS09120 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS09120 PF13192 Thioredoxin domain IX88_RS09135 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS09140 PF00588 SpoU rRNA Methylase family IX88_RS09145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IX88_RS09145 PF14579 Helix-hairpin-helix motif IX88_RS09145 PF02811 PHP domain IX88_RS09145 PF07733 Bacterial DNA polymerase III alpha NTPase domain IX88_RS09145 PF01336 OB-fold nucleic acid binding domain IX88_RS09150 PF17763 Glutaminase/Asparaginase C-terminal domain IX88_RS09150 PF00710 Asparaginase, N-terminal IX88_RS09155 PF00375 Sodium:dicarboxylate symporter family IX88_RS09160 PF00155 Aminotransferase class I and II IX88_RS09165 PF01641 SelR domain IX88_RS09170 PF00255 Glutathione peroxidase IX88_RS09175 PF12852 Cupin IX88_RS09175 PF12833 Helix-turn-helix domain IX88_RS09185 PF00155 Aminotransferase class I and II IX88_RS09190 PF01909 Nucleotidyltransferase domain IX88_RS09190 PF08335 GlnD PII-uridylyltransferase IX88_RS09190 PF01966 HD domain IX88_RS09195 PF02222 ATP-grasp domain IX88_RS09205 PF05437 Branched-chain amino acid transport protein (AzlD) IX88_RS09210 PF03591 AzlC protein IX88_RS09235 PF01926 50S ribosome-binding GTPase IX88_RS09235 PF06071 Protein of unknown function (DUF933) IX88_RS09240 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS09245 PF00005 ABC transporter IX88_RS09245 PF09383 NIL domain IX88_RS09250 PF03180 NLPA lipoprotein IX88_RS09255 PF03180 NLPA lipoprotein IX88_RS09260 PF00296 Luciferase-like monooxygenase IX88_RS09270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS09270 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS09285 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS09290 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS09295 PF00005 ABC transporter IX88_RS09305 PF01037 Lrp/AsnC ligand binding domain IX88_RS09310 PF01709 Transcriptional regulator IX88_RS09320 PF00440 Bacterial regulatory proteins, tetR family IX88_RS09355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS09355 PF03466 LysR substrate binding domain IX88_RS09365 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IX88_RS09375 PF00892 EamA-like transporter family IX88_RS09395 PF13954 PapC N-terminal domain IX88_RS09395 PF00577 Outer membrane usher protein IX88_RS09395 PF13953 PapC C-terminal domain IX88_RS09400 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IX88_RS09400 PF02753 Pili assembly chaperone PapD, C-terminal domain IX88_RS09405 PF16970 Type-1 fimbrial protein, A IX88_RS09420 PF06968 Biotin and Thiamin Synthesis associated domain IX88_RS09420 PF04055 Radical SAM superfamily IX88_RS09425 PF08331 Domain of unknown function (DUF1730) IX88_RS09430 PF01256 Carbohydrate kinase IX88_RS09430 PF03853 YjeF-related protein N-terminus IX88_RS09435 PF02075 Crossover junction endodeoxyribonuclease RuvC IX88_RS09450 PF00905 Penicillin binding protein transpeptidase domain IX88_RS09470 PF02773 S-adenosylmethionine synthetase, C-terminal domain IX88_RS09470 PF02772 S-adenosylmethionine synthetase, central domain IX88_RS09470 PF00438 S-adenosylmethionine synthetase, N-terminal domain IX88_RS09475 PF02780 Transketolase, C-terminal domain IX88_RS09475 PF02779 Transketolase, pyrimidine binding domain IX88_RS09475 PF00456 Transketolase, thiamine diphosphate binding domain IX88_RS09485 PF04264 YceI-like domain IX88_RS09495 PF09992 Phosphodiester glycosidase IX88_RS09505 PF05958 tRNA (Uracil-5-)-methyltransferase IX88_RS09510 PF04229 GrpB protein IX88_RS09515 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IX88_RS09515 PF00171 Aldehyde dehydrogenase family IX88_RS09515 PF14850 DNA-binding domain of Proline dehydrogenase IX88_RS09515 PF01619 Proline dehydrogenase IX88_RS09520 PF01037 Lrp/AsnC ligand binding domain IX88_RS09525 PF00474 Sodium:solute symporter family IX88_RS09530 PF02146 Sir2 family IX88_RS09535 PF01597 Glycine cleavage H-protein IX88_RS09540 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IX88_RS09540 PF12833 Helix-turn-helix domain IX88_RS09550 PF00664 ABC transporter transmembrane region IX88_RS09550 PF00005 ABC transporter IX88_RS09555 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IX88_RS09560 PF06912 Protein of unknown function (DUF1275) IX88_RS09565 PF00375 Sodium:dicarboxylate symporter family IX88_RS09580 PF08007 Cupin superfamily protein IX88_RS09585 PF02545 Maf-like protein IX88_RS09595 PF00162 Phosphoglycerate kinase IX88_RS09605 PF01116 Fructose-bisphosphate aldolase class-II IX88_RS09610 PF00639 PPIC-type PPIASE domain IX88_RS09610 PF09312 SurA N-terminal domain IX88_RS09615 PF04453 LPS transport system D IX88_RS09615 PF03968 OstA-like protein IX88_RS09620 PF01636 Phosphotransferase enzyme family IX88_RS09625 PF00483 Nucleotidyl transferase IX88_RS09630 PF02527 rRNA small subunit methyltransferase G IX88_RS09635 PF13614 AAA domain IX88_RS09640 PF17762 HTH domain found in ParB protein IX88_RS09640 PF02195 ParB-like nuclease domain IX88_RS09645 PF01618 MotA/TolQ/ExbB proton channel family IX88_RS09655 PF00664 ABC transporter transmembrane region IX88_RS09655 PF00005 ABC transporter IX88_RS09660 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IX88_RS09665 PF02348 Cytidylyltransferase IX88_RS09670 PF09115 DNA polymerase III, delta subunit, C terminal IX88_RS09680 PF01026 TatD related DNase IX88_RS09695 PF07963 Prokaryotic N-terminal methylation motif IX88_RS09695 PF02501 Type II secretion system (T2SS), protein I IX88_RS09700 PF07963 Prokaryotic N-terminal methylation motif IX88_RS09700 PF11612 Type II secretion system (T2SS), protein J IX88_RS09705 PF03934 Type II secretion system (T2SS), protein K IX88_RS09715 PF03167 Uracil DNA glycosylase superfamily IX88_RS09725 PF14437 MafB19-like deaminase IX88_RS09735 PF02224 Cytidylate kinase IX88_RS09740 PF00575 S1 RNA binding domain IX88_RS09745 PF00216 Bacterial DNA-binding protein IX88_RS09755 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IX88_RS09765 PF00743 Flavin-binding monooxygenase-like IX88_RS09775 PF03969 AFG1-like ATPase IX88_RS09780 PF01274 Malate synthase IX88_RS09785 PF02472 Biopolymer transport protein ExbD/TolR IX88_RS09790 PF02472 Biopolymer transport protein ExbD/TolR IX88_RS09795 PF01618 MotA/TolQ/ExbB proton channel family IX88_RS09805 PF07715 TonB-dependent Receptor Plug Domain IX88_RS09805 PF00593 TonB dependent receptor IX88_RS09820 PF01432 Peptidase family M3 IX88_RS09825 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS09830 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS09835 PF00005 ABC transporter IX88_RS09835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IX88_RS09850 PF00459 Inositol monophosphatase family IX88_RS09860 PF01649 Ribosomal protein S20 IX88_RS09865 PF13460 NAD(P)H-binding IX88_RS09870 PF03737 Aldolase/RraA IX88_RS09890 PF03461 TRCF domain IX88_RS09890 PF00271 Helicase conserved C-terminal domain IX88_RS09890 PF00270 DEAD/DEAH box helicase IX88_RS09890 PF17757 UvrB interaction domain IX88_RS09890 PF02559 CarD-like/TRCF domain IX88_RS09900 PF00211 Adenylate and Guanylate cyclase catalytic domain IX88_RS09905 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS09910 PF00012 Hsp70 protein IX88_RS09915 PF07743 HSCB C-terminal oligomerisation domain IX88_RS09915 PF00226 DnaJ domain IX88_RS09920 PF01521 Iron-sulphur cluster biosynthesis IX88_RS09925 PF01592 NifU-like N terminal domain IX88_RS09930 PF00266 Aminotransferase class-V IX88_RS09935 PF02082 Transcriptional regulator IX88_RS09950 PF00216 Bacterial DNA-binding protein IX88_RS09955 PF00639 PPIC-type PPIASE domain IX88_RS09955 PF09312 SurA N-terminal domain IX88_RS09960 PF12833 Helix-turn-helix domain IX88_RS09960 PF12852 Cupin IX88_RS09965 PF00487 Fatty acid desaturase IX88_RS09970 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS09970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS09970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS09975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS09975 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS09975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS09980 PF03109 ABC1 family IX88_RS09990 PF04073 Aminoacyl-tRNA editing domain IX88_RS10000 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IX88_RS10005 PF07690 Major Facilitator Superfamily IX88_RS10010 PF04183 IucA / IucC family IX88_RS10010 PF06276 Ferric iron reductase FhuF-like transporter IX88_RS10015 PF06276 Ferric iron reductase FhuF-like transporter IX88_RS10015 PF04183 IucA / IucC family IX88_RS10025 PF03737 Aldolase/RraA IX88_RS10030 PF07715 TonB-dependent Receptor Plug Domain IX88_RS10030 PF00593 TonB dependent receptor IX88_RS10055 PF13419 Haloacid dehalogenase-like hydrolase IX88_RS10065 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IX88_RS10070 PF02277 Phosphoribosyltransferase IX88_RS10075 PF00300 Histidine phosphatase superfamily (branch 1) IX88_RS10085 PF02654 Cobalamin-5-phosphate synthase IX88_RS10090 PF00793 DAHP synthetase I family IX88_RS10095 PF01925 Sulfite exporter TauE/SafE IX88_RS10115 PF00593 TonB dependent receptor IX88_RS10115 PF07715 TonB-dependent Receptor Plug Domain IX88_RS10120 PF02684 Lipid-A-disaccharide synthetase IX88_RS10130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_RS10135 PF00005 ABC transporter IX88_RS10170 PF01230 HIT domain IX88_RS10200 PF08241 Methyltransferase domain IX88_RS10205 PF00561 alpha/beta hydrolase fold IX88_RS10210 PF01053 Cys/Met metabolism PLP-dependent enzyme IX88_RS10220 PF02575 YbaB/EbfC DNA-binding family IX88_RS10225 PF13662 Toprim domain IX88_RS10225 PF02132 RecR protein IX88_RS10230 PF00570 HRDC domain IX88_RS10230 PF01612 3'-5' exonuclease IX88_RS10250 PF05166 YcgL domain IX88_RS10260 PF00004 ATPase family associated with various cellular activities (AAA) IX88_RS10260 PF17862 AAA+ lid domain IX88_RS10260 PF01434 Peptidase family M41 IX88_RS10270 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS10275 PF05175 Methyltransferase small domain IX88_RS10280 PF01264 Chorismate synthase IX88_RS10285 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS10285 PF08448 PAS fold IX88_RS10300 PF04055 Radical SAM superfamily IX88_RS10305 PF00676 Dehydrogenase E1 component IX88_RS10310 PF02779 Transketolase, pyrimidine binding domain IX88_RS10310 PF02780 Transketolase, C-terminal domain IX88_RS10315 PF00364 Biotin-requiring enzyme IX88_RS10315 PF02817 e3 binding domain IX88_RS10315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX88_RS10320 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS10320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_RS10325 PF00106 short chain dehydrogenase IX88_RS10330 PF00107 Zinc-binding dehydrogenase IX88_RS10330 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS10335 PF01062 Bestrophin, RFP-TM, chloride channel IX88_RS10340 PF00072 Response regulator receiver domain IX88_RS10340 PF00158 Sigma-54 interaction domain IX88_RS10340 PF02954 Bacterial regulatory protein, Fis family IX88_RS10345 PF00753 Metallo-beta-lactamase superfamily IX88_RS10345 PF04273 Putative phosphatase (DUF442) IX88_RS10350 PF04273 Putative phosphatase (DUF442) IX88_RS10350 PF00753 Metallo-beta-lactamase superfamily IX88_RS10355 PF01925 Sulfite exporter TauE/SafE IX88_RS10370 PF12833 Helix-turn-helix domain IX88_RS10370 PF06445 GyrI-like small molecule binding domain IX88_RS10375 PF01638 HxlR-like helix-turn-helix IX88_RS10380 PF02525 Flavodoxin-like fold IX88_RS10390 PF07702 UTRA domain IX88_RS10390 PF00392 Bacterial regulatory proteins, gntR family IX88_RS10405 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IX88_RS10410 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS10415 PF00083 Sugar (and other) transporter IX88_RS10420 PF07715 TonB-dependent Receptor Plug Domain IX88_RS10420 PF00593 TonB dependent receptor IX88_RS10425 PF00206 Lyase IX88_RS10425 PF10415 Fumarase C C-terminus IX88_RS10440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS10440 PF03466 LysR substrate binding domain IX88_RS10445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS10445 PF03466 LysR substrate binding domain IX88_RS10450 PF00108 Thiolase, N-terminal domain IX88_RS10450 PF02803 Thiolase, C-terminal domain IX88_RS10455 PF02667 Short chain fatty acid transporter IX88_RS10460 PF01144 Coenzyme A transferase IX88_RS10465 PF01144 Coenzyme A transferase IX88_RS10470 PF03466 LysR substrate binding domain IX88_RS10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS10490 PF00440 Bacterial regulatory proteins, tetR family IX88_RS10510 PF12833 Helix-turn-helix domain IX88_RS10510 PF06719 AraC-type transcriptional regulator N-terminus IX88_RS10515 PF07690 Major Facilitator Superfamily IX88_RS10520 PF01738 Dienelactone hydrolase family IX88_RS10535 PF01613 Flavin reductase like domain IX88_RS10545 PF14525 AraC-binding-like domain IX88_RS10545 PF12833 Helix-turn-helix domain IX88_RS10550 PF00175 Oxidoreductase NAD-binding domain IX88_RS10550 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS10550 PF00970 Oxidoreductase FAD-binding domain IX88_RS10555 PF00866 Ring hydroxylating beta subunit IX88_RS10560 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_RS10560 PF00355 Rieske [2Fe-2S] domain IX88_RS10565 PF03459 TOBE domain IX88_RS10565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS10575 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS10580 PF00005 ABC transporter IX88_RS10580 PF03459 TOBE domain IX88_RS10585 PF00106 short chain dehydrogenase IX88_RS10590 PF00857 Isochorismatase family IX88_RS10590 PF00550 Phosphopantetheine attachment site IX88_RS10600 PF00149 Calcineurin-like phosphoesterase IX88_RS10605 PF17941 Polyphosphate kinase C-terminal domain 1 IX88_RS10605 PF13089 Polyphosphate kinase N-terminal domain IX88_RS10605 PF02503 Polyphosphate kinase middle domain IX88_RS10605 PF13090 Polyphosphate kinase C-terminal domain 2 IX88_RS10610 PF12706 Beta-lactamase superfamily domain IX88_RS10615 PF03070 TENA/THI-4/PQQC family IX88_RS10620 PF05402 Coenzyme PQQ synthesis protein D (PqqD) IX88_RS10625 PF13186 Iron-sulfur cluster-binding domain IX88_RS10625 PF04055 Radical SAM superfamily IX88_RS10630 PF01244 Membrane dipeptidase (Peptidase family M19) IX88_RS10650 PF13091 PLD-like domain IX88_RS10665 PF00199 Catalase IX88_RS10675 PF00107 Zinc-binding dehydrogenase IX88_RS10675 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS10690 PF00577 Outer membrane usher protein IX88_RS10690 PF13954 PapC N-terminal domain IX88_RS10690 PF13953 PapC C-terminal domain IX88_RS10695 PF02753 Pili assembly chaperone PapD, C-terminal domain IX88_RS10695 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IX88_RS10700 PF16970 Type-1 fimbrial protein, A IX88_RS10765 PF17760 UvrA interaction domain IX88_RS10765 PF17755 UvrA DNA-binding domain IX88_RS10765 PF00005 ABC transporter IX88_RS10770 PF00873 AcrB/AcrD/AcrF family IX88_RS10775 PF00529 HlyD membrane-fusion protein of T1SS IX88_RS10775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_RS10780 PF00486 Transcriptional regulatory protein, C terminal IX88_RS10780 PF00072 Response regulator receiver domain IX88_RS10795 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS10795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS10795 PF16527 Two-component sensor protein CpxA, periplasmic domain IX88_RS10795 PF00672 HAMP domain IX88_RS10805 PF12833 Helix-turn-helix domain IX88_RS10805 PF02311 AraC-like ligand binding domain IX88_RS10810 PF12146 Serine aminopeptidase, S33 IX88_RS10830 PF13673 Acetyltransferase (GNAT) domain IX88_RS10860 PF04607 Region found in RelA / SpoT proteins IX88_RS10860 PF02824 TGS domain IX88_RS10860 PF13291 ACT domain IX88_RS10870 PF01975 Survival protein SurE IX88_RS10895 PF07690 Major Facilitator Superfamily IX88_RS10900 PF13533 Biotin-lipoyl like IX88_RS10915 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IX88_RS10920 PF14572 Phosphoribosyl synthetase-associated domain IX88_RS10920 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IX88_RS10940 PF00005 ABC transporter IX88_RS10945 PF01032 FecCD transport family IX88_RS10955 PF00107 Zinc-binding dehydrogenase IX88_RS10955 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS10970 PF12833 Helix-turn-helix domain IX88_RS10970 PF06719 AraC-type transcriptional regulator N-terminus IX88_RS10975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IX88_RS10975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IX88_RS10980 PF07690 Major Facilitator Superfamily IX88_RS10985 PF01370 NAD dependent epimerase/dehydratase family IX88_RS10990 PF03466 LysR substrate binding domain IX88_RS10990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS11000 PF00920 Dehydratase family IX88_RS11005 PF00171 Aldehyde dehydrogenase family IX88_RS11020 PF13533 Biotin-lipoyl like IX88_RS11045 PF03466 LysR substrate binding domain IX88_RS11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS11055 PF08450 SMP-30/Gluconolactonase/LRE-like region IX88_RS11060 PF00392 Bacterial regulatory proteins, gntR family IX88_RS11060 PF07702 UTRA domain IX88_RS11070 PF04909 Amidohydrolase IX88_RS11075 PF07690 Major Facilitator Superfamily IX88_RS11090 PF05860 haemagglutination activity domain IX88_RS11090 PF04829 Pre-toxin domain with VENN motif IX88_RS11090 PF13018 Extended Signal Peptide of Type V secretion system IX88_RS11090 PF13332 Hemagglutinin repeat IX88_RS11095 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IX88_RS11095 PF17287 POTRA domain IX88_RS11095 PF08479 POTRA domain, ShlB-type IX88_RS11105 PF01546 Peptidase family M20/M25/M40 IX88_RS11105 PF07687 Peptidase dimerisation domain IX88_RS11115 PF02254 TrkA-N domain IX88_RS11115 PF00999 Sodium/hydrogen exchanger family IX88_RS11120 PF07995 Glucose / Sorbosone dehydrogenase IX88_RS11125 PF03466 LysR substrate binding domain IX88_RS11125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS11130 PF00857 Isochorismatase family IX88_RS11140 PF00440 Bacterial regulatory proteins, tetR family IX88_RS11140 PF08359 YsiA-like protein, C-terminal region IX88_RS11145 PF12706 Beta-lactamase superfamily domain IX88_RS11155 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS11165 PF09278 MerR, DNA binding IX88_RS11165 PF00376 MerR family regulatory protein IX88_RS11175 PF00106 short chain dehydrogenase IX88_RS11180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_RS11180 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS11185 PF00561 alpha/beta hydrolase fold IX88_RS11195 PF00171 Aldehyde dehydrogenase family IX88_RS11205 PF07690 Major Facilitator Superfamily IX88_RS11210 PF00920 Dehydratase family IX88_RS11215 PF00392 Bacterial regulatory proteins, gntR family IX88_RS11215 PF07729 FCD domain IX88_RS11225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS11225 PF03466 LysR substrate binding domain IX88_RS11230 PF13378 Enolase C-terminal domain-like IX88_RS11230 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IX88_RS11235 PF02426 Muconolactone delta-isomerase IX88_RS11240 PF00775 Dioxygenase IX88_RS11240 PF04444 Catechol dioxygenase N terminus IX88_RS11245 PF01144 Coenzyme A transferase IX88_RS11250 PF01144 Coenzyme A transferase IX88_RS11255 PF02803 Thiolase, C-terminal domain IX88_RS11255 PF00108 Thiolase, N-terminal domain IX88_RS11260 PF12146 Serine aminopeptidase, S33 IX88_RS11265 PF01804 Penicillin amidase IX88_RS11270 PF00171 Aldehyde dehydrogenase family IX88_RS11280 PF02728 Copper amine oxidase, N3 domain IX88_RS11280 PF02727 Copper amine oxidase, N2 domain IX88_RS11280 PF07833 Copper amine oxidase N-terminal domain IX88_RS11280 PF01179 Copper amine oxidase, enzyme domain IX88_RS11285 PF12833 Helix-turn-helix domain IX88_RS11285 PF02311 AraC-like ligand binding domain IX88_RS11290 PF01613 Flavin reductase like domain IX88_RS11295 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS11295 PF00175 Oxidoreductase NAD-binding domain IX88_RS11310 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IX88_RS11310 PF00355 Rieske [2Fe-2S] domain IX88_RS11325 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS11330 PF01425 Amidase IX88_RS11340 PF07690 Major Facilitator Superfamily IX88_RS11350 PF00106 short chain dehydrogenase IX88_RS11365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS11365 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS11365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS11370 PF03466 LysR substrate binding domain IX88_RS11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS11375 PF01614 Bacterial transcriptional regulator IX88_RS11375 PF09339 IclR helix-turn-helix domain IX88_RS11380 PF00753 Metallo-beta-lactamase superfamily IX88_RS11390 PF04143 Sulphur transport IX88_RS11400 PF01011 PQQ enzyme repeat IX88_RS11400 PF13360 PQQ-like domain IX88_RS11405 PF04966 Carbohydrate-selective porin, OprB family IX88_RS11410 PF05048 Periplasmic copper-binding protein (NosD) IX88_RS11415 PF01487 Type I 3-dehydroquinase IX88_RS11420 PF00775 Dioxygenase IX88_RS11425 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IX88_RS11425 PF00775 Dioxygenase IX88_RS11430 PF02627 Carboxymuconolactone decarboxylase family IX88_RS11435 PF07690 Major Facilitator Superfamily IX88_RS11440 PF00561 alpha/beta hydrolase fold IX88_RS11445 PF10397 Adenylosuccinate lyase C-terminus IX88_RS11445 PF00206 Lyase IX88_RS11450 PF00108 Thiolase, N-terminal domain IX88_RS11450 PF02803 Thiolase, C-terminal domain IX88_RS11455 PF01144 Coenzyme A transferase IX88_RS11460 PF01144 Coenzyme A transferase IX88_RS11465 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IX88_RS11470 PF04977 Septum formation initiator IX88_RS11475 PF04239 Protein of unknown function (DUF421) IX88_RS11480 PF00113 Enolase, C-terminal TIM barrel domain IX88_RS11480 PF03952 Enolase, N-terminal domain IX88_RS11485 PF00793 DAHP synthetase I family IX88_RS11490 PF00117 Glutamine amidotransferase class-I IX88_RS11490 PF06418 CTP synthase N-terminus IX88_RS11520 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS11520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_RS11535 PF00793 DAHP synthetase I family IX88_RS11540 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IX88_RS11545 PF02861 Clp amino terminal domain, pathogenicity island component IX88_RS11545 PF17871 AAA lid domain IX88_RS11545 PF10431 C-terminal, D2-small domain, of ClpB protein IX88_RS11545 PF07724 AAA domain (Cdc48 subfamily) IX88_RS11545 PF00004 ATPase family associated with various cellular activities (AAA) IX88_RS11550 PF02617 ATP-dependent Clp protease adaptor protein ClpS IX88_RS11560 PF01118 Semialdehyde dehydrogenase, NAD binding domain IX88_RS11560 PF02774 Semialdehyde dehydrogenase, dimerisation domain IX88_RS11575 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IX88_RS11580 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS11580 PF00585 C-terminal regulatory domain of Threonine dehydratase IX88_RS11585 PF02080 TrkA-C domain IX88_RS11585 PF02254 TrkA-N domain IX88_RS11590 PF02386 Cation transport protein IX88_RS11595 PF02253 Phospholipase A1 IX88_RS11600 PF00675 Insulinase (Peptidase family M16) IX88_RS11600 PF05193 Peptidase M16 inactive domain IX88_RS11600 PF08367 Peptidase M16C associated IX88_RS11605 PF07715 TonB-dependent Receptor Plug Domain IX88_RS11605 PF00593 TonB dependent receptor IX88_RS11610 PF00294 pfkB family carbohydrate kinase IX88_RS11620 PF07290 Protein of unknown function (DUF1449) IX88_RS11630 PF01654 Cytochrome bd terminal oxidase subunit I IX88_RS11635 PF02322 Cytochrome bd terminal oxidase subunit II IX88_RS11640 PF08173 Membrane bound YbgT-like protein IX88_RS11655 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IX88_RS11665 PF02881 SRP54-type protein, helical bundle domain IX88_RS11665 PF00448 SRP54-type protein, GTPase domain IX88_RS11690 PF00571 CBS domain IX88_RS11690 PF00478 IMP dehydrogenase / GMP reductase domain IX88_RS11695 PF00202 Aminotransferase class-III IX88_RS11700 PF00462 Glutaredoxin IX88_RS11710 PF03466 LysR substrate binding domain IX88_RS11710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS11715 PF00557 Metallopeptidase family M24 IX88_RS11720 PF05525 Branched-chain amino acid transport protein IX88_RS11745 PF02896 PEP-utilising enzyme, TIM barrel domain IX88_RS11745 PF00381 PTS HPr component phosphorylation site IX88_RS11745 PF00391 PEP-utilising enzyme, mobile domain IX88_RS11745 PF05524 PEP-utilising enzyme, N-terminal IX88_RS11745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IX88_RS11750 PF00294 pfkB family carbohydrate kinase IX88_RS11755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IX88_RS11755 PF02378 Phosphotransferase system, EIIC IX88_RS11770 PF03707 Bacterial signalling protein N terminal repeat IX88_RS11770 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS11770 PF00563 EAL domain IX88_RS11780 PF07995 Glucose / Sorbosone dehydrogenase IX88_RS11785 PF02586 SOS response associated peptidase (SRAP) IX88_RS11790 PF01740 STAS domain IX88_RS11790 PF00916 Sulfate permease family IX88_RS11795 PF00082 Subtilase family IX88_RS11795 PF05922 Peptidase inhibitor I9 IX88_RS11805 PF00324 Amino acid permease IX88_RS11810 PF00266 Aminotransferase class-V IX88_RS11815 PF01037 Lrp/AsnC ligand binding domain IX88_RS11840 PF13419 Haloacid dehalogenase-like hydrolase IX88_RS11845 PF01479 S4 domain IX88_RS11850 PF00154 recA bacterial DNA recombination protein IX88_RS11855 PF02631 RecX family IX88_RS11870 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IX88_RS11870 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS11875 PF07977 FabA-like domain IX88_RS11880 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS11880 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IX88_RS11890 PF01103 Surface antigen IX88_RS11890 PF07244 Surface antigen variable number repeat IX88_RS11895 PF17820 PDZ domain IX88_RS11895 PF13180 PDZ domain IX88_RS11895 PF02163 Peptidase family M50 IX88_RS11900 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IX88_RS11900 PF13288 DXP reductoisomerase C-terminal domain IX88_RS11900 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IX88_RS11910 PF01255 Putative undecaprenyl diphosphate synthase IX88_RS11915 PF01765 Ribosome recycling factor IX88_RS11920 PF00696 Amino acid kinase family IX88_RS11925 PF00919 Uncharacterized protein family UPF0004 IX88_RS11925 PF04055 Radical SAM superfamily IX88_RS11925 PF18693 TRAM domain IX88_RS11930 PF00989 PAS fold IX88_RS11930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS11930 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS11935 PF00072 Response regulator receiver domain IX88_RS11935 PF00158 Sigma-54 interaction domain IX88_RS11935 PF02954 Bacterial regulatory protein, Fis family IX88_RS11945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IX88_RS11945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IX88_RS11955 PF02542 YgbB family IX88_RS11965 PF01266 FAD dependent oxidoreductase IX88_RS11985 PF00206 Lyase IX88_RS11985 PF10415 Fumarase C C-terminus IX88_RS11990 PF16363 GDP-mannose 4,6 dehydratase IX88_RS11995 PF02635 DsrE/DsrF-like family IX88_RS12015 PF00892 EamA-like transporter family IX88_RS12020 PF00392 Bacterial regulatory proteins, gntR family IX88_RS12020 PF00155 Aminotransferase class I and II IX88_RS12025 PF01638 HxlR-like helix-turn-helix IX88_RS12030 PF03454 MoeA C-terminal region (domain IV) IX88_RS12030 PF00994 Probable molybdopterin binding domain IX88_RS12030 PF03453 MoeA N-terminal region (domain I and II) IX88_RS12035 PF00994 Probable molybdopterin binding domain IX88_RS12035 PF01967 MoaC family IX88_RS12040 PF02391 MoaE protein IX88_RS12050 PF04055 Radical SAM superfamily IX88_RS12050 PF06463 Molybdenum Cofactor Synthesis C IX88_RS12055 PF00384 Molybdopterin oxidoreductase IX88_RS12055 PF01568 Molydopterin dinucleotide binding domain IX88_RS12055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX88_RS12060 PF12804 MobA-like NTP transferase domain IX88_RS12065 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IX88_RS12065 PF00384 Molybdopterin oxidoreductase IX88_RS12065 PF01568 Molydopterin dinucleotide binding domain IX88_RS12065 PF04324 BFD-like [2Fe-2S] binding domain IX88_RS12070 PF18267 Rubredoxin NAD+ reductase C-terminal domain IX88_RS12070 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS12070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX88_RS12070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX88_RS12070 PF04324 BFD-like [2Fe-2S] binding domain IX88_RS12075 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX88_RS12075 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS12075 PF04324 BFD-like [2Fe-2S] binding domain IX88_RS12075 PF18267 Rubredoxin NAD+ reductase C-terminal domain IX88_RS12075 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX88_RS12075 PF13806 Rieske-like [2Fe-2S] domain IX88_RS12085 PF00486 Transcriptional regulatory protein, C terminal IX88_RS12085 PF00072 Response regulator receiver domain IX88_RS12090 PF00005 ABC transporter IX88_RS12095 PF13438 Domain of unknown function (DUF4113) IX88_RS12095 PF00817 impB/mucB/samB family IX88_RS12095 PF11799 impB/mucB/samB family C-terminal domain IX88_RS12100 PF01220 Dehydroquinase class II IX88_RS12105 PF00364 Biotin-requiring enzyme IX88_RS12110 PF02785 Biotin carboxylase C-terminal domain IX88_RS12110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_RS12110 PF00289 Biotin carboxylase, N-terminal domain IX88_RS12120 PF12832 MFS_1 like family IX88_RS12145 PF00717 Peptidase S24-like IX88_RS12150 PF11798 IMS family HHH motif IX88_RS12150 PF11799 impB/mucB/samB family C-terminal domain IX88_RS12150 PF00817 impB/mucB/samB family IX88_RS12150 PF13438 Domain of unknown function (DUF4113) IX88_RS12250 PF00871 Acetokinase family IX88_RS12420 PF01695 IstB-like ATP binding protein IX88_RS12535 PF01645 Conserved region in glutamate synthase IX88_RS12550 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IX88_RS12550 PF01565 FAD binding domain IX88_RS12555 PF01451 Low molecular weight phosphotyrosine protein phosphatase IX88_RS12565 PF00465 Iron-containing alcohol dehydrogenase IX88_RS12570 PF03061 Thioesterase superfamily IX88_RS12575 PF05506 Domain of unknown function (DUF756) IX88_RS12575 PF04185 Phosphoesterase family IX88_RS12580 PF12169 DNA polymerase III subunits gamma and tau domain III IX88_RS12580 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IX88_RS12580 PF12170 DNA polymerase III tau subunit V interacting with alpha IX88_RS12595 PF07690 Major Facilitator Superfamily IX88_RS12605 PF00144 Beta-lactamase IX88_RS12620 PF02803 Thiolase, C-terminal domain IX88_RS12620 PF00108 Thiolase, N-terminal domain IX88_RS12630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS12630 PF03466 LysR substrate binding domain IX88_RS12635 PF00923 Transaldolase/Fructose-6-phosphate aldolase IX88_RS12640 PF01810 LysE type translocator IX88_RS12645 PF01037 Lrp/AsnC ligand binding domain IX88_RS12650 PF03594 Benzoate membrane transport protein IX88_RS12655 PF02308 MgtC family IX88_RS12660 PF00690 Cation transporter/ATPase, N-terminus IX88_RS12660 PF00689 Cation transporting ATPase, C-terminus IX88_RS12680 PF00582 Universal stress protein family IX88_RS12685 PF12848 ABC transporter IX88_RS12685 PF00005 ABC transporter IX88_RS12705 PF00593 TonB dependent receptor IX88_RS12705 PF07715 TonB-dependent Receptor Plug Domain IX88_RS12735 PF00924 Mechanosensitive ion channel IX88_RS12740 PF07715 TonB-dependent Receptor Plug Domain IX88_RS12740 PF00593 TonB dependent receptor IX88_RS12745 PF00440 Bacterial regulatory proteins, tetR family IX88_RS12755 PF13276 HTH-like domain IX88_RS12755 PF13333 Integrase core domain IX88_RS12755 PF00665 Integrase core domain IX88_RS12765 PF01037 Lrp/AsnC ligand binding domain IX88_RS12770 PF01817 Chorismate mutase type II IX88_RS12810 PF11940 Domain of unknown function (DUF3458) Ig-like fold IX88_RS12810 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IX88_RS12810 PF01433 Peptidase family M1 domain IX88_RS12825 PF02110 Hydroxyethylthiazole kinase family IX88_RS12830 PF06445 GyrI-like small molecule binding domain IX88_RS12840 PF05970 PIF1-like helicase IX88_RS12840 PF14493 Helix-turn-helix domain IX88_RS12845 PF00465 Iron-containing alcohol dehydrogenase IX88_RS12860 PF00171 Aldehyde dehydrogenase family IX88_RS12865 PF13520 Amino acid permease IX88_RS12870 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IX88_RS12875 PF05985 Ethanolamine ammonia-lyase light chain (EutC) IX88_RS12880 PF00117 Glutamine amidotransferase class-I IX88_RS12880 PF00958 GMP synthase C terminal domain IX88_RS12880 PF02540 NAD synthase IX88_RS12885 PF00749 tRNA synthetases class I (E and Q), catalytic domain IX88_RS12885 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IX88_RS12890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IX88_RS12895 PF00149 Calcineurin-like phosphoesterase IX88_RS12905 PF00881 Nitroreductase family IX88_RS12915 PF17209 Hfq protein IX88_RS12925 PF08676 MutL C terminal dimerisation domain IX88_RS12925 PF01119 DNA mismatch repair protein, C-terminal domain IX88_RS12930 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IX88_RS12935 PF01479 S4 domain IX88_RS12935 PF00849 RNA pseudouridylate synthase IX88_RS12950 PF01479 S4 domain IX88_RS12950 PF00849 RNA pseudouridylate synthase IX88_RS12960 PF04284 Protein of unknown function (DUF441) IX88_RS12965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS12965 PF03466 LysR substrate binding domain IX88_RS12980 PF07690 Major Facilitator Superfamily IX88_RS12985 PF00520 Ion transport protein IX88_RS12985 PF00027 Cyclic nucleotide-binding domain IX88_RS12995 PF06434 Aconitate hydratase 2 N-terminus IX88_RS12995 PF11791 Aconitate B N-terminal domain IX88_RS12995 PF00330 Aconitase family (aconitate hydratase) IX88_RS13010 PF17243 POTRA domain TamA domain 1 IX88_RS13010 PF01103 Surface antigen IX88_RS13010 PF07244 Surface antigen variable number repeat IX88_RS13015 PF07690 Major Facilitator Superfamily IX88_RS13020 PF03232 Ubiquinone biosynthesis protein COQ7 IX88_RS13030 PF00120 Glutamine synthetase, catalytic domain IX88_RS13035 PF00486 Transcriptional regulatory protein, C terminal IX88_RS13035 PF00072 Response regulator receiver domain IX88_RS13040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS13040 PF13493 Domain of unknown function (DUF4118) IX88_RS13040 PF02702 Osmosensitive K+ channel His kinase sensor domain IX88_RS13040 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS13045 PF02669 K+-transporting ATPase, c chain IX88_RS13055 PF03814 Potassium-transporting ATPase A subunit IX88_RS13070 PF03109 ABC1 family IX88_RS13075 PF00899 ThiF family IX88_RS13080 PF01613 Flavin reductase like domain IX88_RS13085 PF13193 AMP-binding enzyme C-terminal domain IX88_RS13085 PF00501 AMP-binding enzyme IX88_RS13090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS13090 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS13090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS13095 PF00106 short chain dehydrogenase IX88_RS13100 PF12833 Helix-turn-helix domain IX88_RS13105 PF09084 NMT1/THI5 like IX88_RS13110 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS13115 PF17827 PrmC N-terminal domain IX88_RS13115 PF13847 Methyltransferase domain IX88_RS13120 PF00472 RF-1 domain IX88_RS13120 PF03462 PCRF domain IX88_RS13130 PF03466 LysR substrate binding domain IX88_RS13130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS13145 PF00296 Luciferase-like monooxygenase IX88_RS13155 PF13994 PgaD-like protein IX88_RS13160 PF00535 Glycosyl transferase family 2 IX88_RS13165 PF01522 Polysaccharide deacetylase IX88_RS13165 PF14883 Hypothetical glycosyl hydrolase family 13 IX88_RS13175 PF03618 Kinase/pyrophosphorylase IX88_RS13180 PF00391 PEP-utilising enzyme, mobile domain IX88_RS13180 PF02896 PEP-utilising enzyme, TIM barrel domain IX88_RS13180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IX88_RS13190 PF06481 COX Aromatic Rich Motif IX88_RS13190 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IX88_RS13195 PF00115 Cytochrome C and Quinol oxidase polypeptide I IX88_RS13200 PF00510 Cytochrome c oxidase subunit III IX88_RS13205 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IX88_RS13210 PF01040 UbiA prenyltransferase family IX88_RS13215 PF01250 Ribosomal protein S6 IX88_RS13220 PF01084 Ribosomal protein S18 IX88_RS13225 PF03948 Ribosomal protein L9, C-terminal domain IX88_RS13225 PF01281 Ribosomal protein L9, N-terminal domain IX88_RS13230 PF03796 DnaB-like helicase C terminal domain IX88_RS13230 PF00772 DnaB-like helicase N terminal domain IX88_RS13235 PF00842 Alanine racemase, C-terminal domain IX88_RS13235 PF01168 Alanine racemase, N-terminal domain IX88_RS13245 PF08379 Bacterial transglutaminase-like N-terminal region IX88_RS13245 PF01841 Transglutaminase-like superfamily IX88_RS13255 PF14403 Circularly permuted ATP-grasp type 2 IX88_RS13265 PF01134 Glucose inhibited division protein A IX88_RS13265 PF13932 GidA associated domain IX88_RS13285 PF02954 Bacterial regulatory protein, Fis family IX88_RS13290 PF02142 MGS-like domain IX88_RS13290 PF01808 AICARFT/IMPCHase bienzyme IX88_RS13295 PF02844 Phosphoribosylglycinamide synthetase, N domain IX88_RS13295 PF02843 Phosphoribosylglycinamide synthetase, C domain IX88_RS13295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IX88_RS13300 PF03180 NLPA lipoprotein IX88_RS13305 PF09383 NIL domain IX88_RS13305 PF00005 ABC transporter IX88_RS13310 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS13315 PF16123 Hydroxyacylglutathione hydrolase C-terminus IX88_RS13315 PF00753 Metallo-beta-lactamase superfamily IX88_RS13325 PF00375 Sodium:dicarboxylate symporter family IX88_RS13345 PF07995 Glucose / Sorbosone dehydrogenase IX88_RS13350 PF00892 EamA-like transporter family IX88_RS13355 PF01177 Asp/Glu/Hydantoin racemase IX88_RS13375 PF00072 Response regulator receiver domain IX88_RS13375 PF00486 Transcriptional regulatory protein, C terminal IX88_RS13380 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS13380 PF08521 Two-component sensor kinase N-terminal IX88_RS13380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS13420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS13420 PF00672 HAMP domain IX88_RS13420 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS13425 PF00072 Response regulator receiver domain IX88_RS13425 PF00486 Transcriptional regulatory protein, C terminal IX88_RS13435 PF00576 HIUase/Transthyretin family IX88_RS13445 PF02470 MlaD protein IX88_RS13450 PF04403 Paraquat-inducible protein A IX88_RS13480 PF00083 Sugar (and other) transporter IX88_RS13480 PF08946 Osmosensory transporter coiled coil IX88_RS13530 PF00392 Bacterial regulatory proteins, gntR family IX88_RS13530 PF07729 FCD domain IX88_RS13540 PF03616 Sodium/glutamate symporter IX88_RS13545 PF00561 alpha/beta hydrolase fold IX88_RS13570 PF04076 Bacterial OB fold (BOF) protein IX88_RS13600 PF00324 Amino acid permease IX88_RS13605 PF00171 Aldehyde dehydrogenase family IX88_RS13610 PF00202 Aminotransferase class-III IX88_RS13615 PF03466 LysR substrate binding domain IX88_RS13615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS13645 PF05860 haemagglutination activity domain IX88_RS13645 PF13018 Extended Signal Peptide of Type V secretion system IX88_RS13645 PF13332 Hemagglutinin repeat IX88_RS13645 PF04829 Pre-toxin domain with VENN motif IX88_RS13650 PF17287 POTRA domain IX88_RS13650 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IX88_RS13650 PF08479 POTRA domain, ShlB-type IX88_RS13675 PF00069 Protein kinase domain IX88_RS13695 PF00814 Glycoprotease family IX88_RS13700 PF01165 Ribosomal protein S21 IX88_RS13705 PF09424 Yqey-like protein IX88_RS13710 PF01435 Peptidase family M48 IX88_RS13715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX88_RS13715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX88_RS13730 PF00156 Phosphoribosyl transferase domain IX88_RS13735 PF02674 Colicin V production protein IX88_RS13740 PF01180 Dihydroorotate dehydrogenase IX88_RS13790 PF03869 Arc-like DNA binding domain IX88_RS13950 PF00772 DnaB-like helicase N terminal domain IX88_RS13950 PF03796 DnaB-like helicase C terminal domain IX88_RS14035 PF00589 Phage integrase family IX88_RS14045 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IX88_RS14045 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IX88_RS14050 PF00881 Nitroreductase family IX88_RS14060 PF00270 DEAD/DEAH box helicase IX88_RS14060 PF00271 Helicase conserved C-terminal domain IX88_RS14065 PF00313 'Cold-shock' DNA-binding domain IX88_RS14075 PF04542 Sigma-70 region 2 IX88_RS14075 PF00140 Sigma-70 factor, region 1.2 IX88_RS14075 PF04545 Sigma-70, region 4 IX88_RS14080 PF04241 Protein of unknown function (DUF423) IX88_RS14090 PF05690 Thiazole biosynthesis protein ThiG IX88_RS14100 PF03883 Peroxide stress protein YaaA IX88_RS14110 PF00753 Metallo-beta-lactamase superfamily IX88_RS14115 PF07687 Peptidase dimerisation domain IX88_RS14115 PF01546 Peptidase family M20/M25/M40 IX88_RS14125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IX88_RS14130 PF01842 ACT domain IX88_RS14130 PF01817 Chorismate mutase type II IX88_RS14130 PF00800 Prephenate dehydratase IX88_RS14135 PF00756 Putative esterase IX88_RS14140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS14140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS14140 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS14145 PF00375 Sodium:dicarboxylate symporter family IX88_RS14150 PF02885 Glycosyl transferase family, helical bundle domain IX88_RS14150 PF00591 Glycosyl transferase family, a/b domain IX88_RS14155 PF07023 Protein of unknown function (DUF1315) IX88_RS14160 PF01513 ATP-NAD kinase IX88_RS14165 PF14814 Bifunctional transglycosylase second domain IX88_RS14165 PF00905 Penicillin binding protein transpeptidase domain IX88_RS14165 PF00912 Transglycosylase IX88_RS14175 PF00293 NUDIX domain IX88_RS14185 PF08521 Two-component sensor kinase N-terminal IX88_RS14185 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS14185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS14190 PF00072 Response regulator receiver domain IX88_RS14190 PF00486 Transcriptional regulatory protein, C terminal IX88_RS14195 PF04076 Bacterial OB fold (BOF) protein IX88_RS14200 PF00437 Type II/IV secretion system protein IX88_RS14200 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IX88_RS14210 PF18389 TrmO C-terminal domain IX88_RS14210 PF01980 tRNA-methyltransferase O IX88_RS14215 PF00175 Oxidoreductase NAD-binding domain IX88_RS14215 PF00970 Oxidoreductase FAD-binding domain IX88_RS14220 PF02567 Phenazine biosynthesis-like protein IX88_RS14225 PF00155 Aminotransferase class I and II IX88_RS14225 PF00392 Bacterial regulatory proteins, gntR family IX88_RS14230 PF01136 Peptidase family U32 IX88_RS14230 PF16325 Peptidase family U32 C-terminal domain IX88_RS14235 PF00037 4Fe-4S binding domain IX88_RS14240 PF00893 Small Multidrug Resistance protein IX88_RS14245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS14245 PF03466 LysR substrate binding domain IX88_RS14250 PF13533 Biotin-lipoyl like IX88_RS14255 PF00873 AcrB/AcrD/AcrF family IX88_RS14260 PF02321 Outer membrane efflux protein IX88_RS14265 PF00464 Serine hydroxymethyltransferase IX88_RS14290 PF00005 ABC transporter IX88_RS14295 PF01061 ABC-2 type transporter IX88_RS14300 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IX88_RS14300 PF14489 QueF-like protein IX88_RS14310 PF01098 Cell cycle protein IX88_RS14315 PF13406 Transglycosylase SLT domain IX88_RS14320 PF05036 Sporulation related domain IX88_RS14320 PF03330 Lytic transglycolase IX88_RS14340 PF12833 Helix-turn-helix domain IX88_RS14350 PF00889 Elongation factor TS IX88_RS14355 PF00318 Ribosomal protein S2 IX88_RS14360 PF00557 Metallopeptidase family M24 IX88_RS14370 PF07690 Major Facilitator Superfamily IX88_RS14385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_RS14385 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS14390 PF04055 Radical SAM superfamily IX88_RS14395 PF09317 Domain of unknown function (DUF1974) IX88_RS14395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS14395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS14410 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IX88_RS14410 PF05221 S-adenosyl-L-homocysteine hydrolase IX88_RS14415 PF02219 Methylenetetrahydrofolate reductase IX88_RS14420 PF04452 RNA methyltransferase IX88_RS14425 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS14425 PF00563 EAL domain IX88_RS14425 PF03707 Bacterial signalling protein N terminal repeat IX88_RS14430 PF00390 Malic enzyme, N-terminal domain IX88_RS14430 PF01515 Phosphate acetyl/butaryl transferase IX88_RS14430 PF03949 Malic enzyme, NAD binding domain IX88_RS14435 PF01743 Poly A polymerase head domain IX88_RS14435 PF12627 Probable RNA and SrmB- binding site of polymerase A IX88_RS14440 PF13180 PDZ domain IX88_RS14445 PF01784 NIF3 (NGG1p interacting factor 3) IX88_RS14450 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IX88_RS14450 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IX88_RS14485 PF01040 UbiA prenyltransferase family IX88_RS14490 PF04345 Chorismate lyase IX88_RS14495 PF03951 Glutamine synthetase, beta-Grasp domain IX88_RS14495 PF00120 Glutamine synthetase, catalytic domain IX88_RS14500 PF00854 POT family IX88_RS14510 PF00589 Phage integrase family IX88_RS14510 PF13356 Arm DNA-binding domain IX88_RS14550 PF00149 Calcineurin-like phosphoesterase IX88_RS14575 PF05154 TM2 domain IX88_RS14630 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) IX88_RS14645 PF06381 Protein of unknown function (DUF1073) IX88_RS14665 PF13276 HTH-like domain IX88_RS14665 PF13333 Integrase core domain IX88_RS14665 PF00665 Integrase core domain IX88_RS14670 PF01527 Transposase IX88_RS14720 PF01695 IstB-like ATP binding protein IX88_RS14825 PF00117 Glutamine amidotransferase class-I IX88_RS14830 PF01433 Peptidase family M1 domain IX88_RS14830 PF11838 ERAP1-like C-terminal domain IX88_RS14835 PF07715 TonB-dependent Receptor Plug Domain IX88_RS14835 PF00593 TonB dependent receptor IX88_RS14840 PF00591 Glycosyl transferase family, a/b domain IX88_RS14840 PF02885 Glycosyl transferase family, helical bundle domain IX88_RS14845 PF00218 Indole-3-glycerol phosphate synthase IX88_RS14860 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IX88_RS14860 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IX88_RS14865 PF01799 [2Fe-2S] binding domain IX88_RS14865 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS14870 PF01227 GTP cyclohydrolase I IX88_RS14875 PF00144 Beta-lactamase IX88_RS14890 PF05675 Protein of unknown function (DUF817) IX88_RS14895 PF01208 Uroporphyrinogen decarboxylase (URO-D) IX88_RS14905 PF00425 chorismate binding enzyme IX88_RS14915 PF00975 Thioesterase domain IX88_RS14920 PF00005 ABC transporter IX88_RS14925 PF00005 ABC transporter IX88_RS14935 PF00282 Pyridoxal-dependent decarboxylase conserved domain IX88_RS14940 PF00550 Phosphopantetheine attachment site IX88_RS14940 PF00857 Isochorismatase family IX88_RS14945 PF00501 AMP-binding enzyme IX88_RS14945 PF13193 AMP-binding enzyme C-terminal domain IX88_RS14950 PF00550 Phosphopantetheine attachment site IX88_RS14950 PF00668 Condensation domain IX88_RS14950 PF00501 AMP-binding enzyme IX88_RS14955 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IX88_RS14960 PF07715 TonB-dependent Receptor Plug Domain IX88_RS14960 PF00593 TonB dependent receptor IX88_RS14965 PF01497 Periplasmic binding protein IX88_RS14970 PF00005 ABC transporter IX88_RS14975 PF01032 FecCD transport family IX88_RS14980 PF01032 FecCD transport family IX88_RS14985 PF00550 Phosphopantetheine attachment site IX88_RS14985 PF00975 Thioesterase domain IX88_RS14985 PF00668 Condensation domain IX88_RS14985 PF13193 AMP-binding enzyme C-terminal domain IX88_RS14985 PF00501 AMP-binding enzyme IX88_RS14990 PF00668 Condensation domain IX88_RS14990 PF00501 AMP-binding enzyme IX88_RS14990 PF00550 Phosphopantetheine attachment site IX88_RS14990 PF13193 AMP-binding enzyme C-terminal domain IX88_RS15000 PF08348 YheO-like PAS domain IX88_RS15000 PF13309 HTH domain IX88_RS15005 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS15010 PF02678 Pirin IX88_RS15010 PF17954 Quercetinase C-terminal cupin domain IX88_RS15035 PF04328 Selenoprotein, putative IX88_RS15040 PF02554 Carbon starvation protein CstA IX88_RS15040 PF13722 5TM C-terminal transporter carbon starvation CstA IX88_RS15045 PF08207 Elongation factor P (EF-P) KOW-like domain IX88_RS15045 PF09285 Elongation factor P, C-terminal IX88_RS15045 PF01132 Elongation factor P (EF-P) OB domain IX88_RS15050 PF04055 Radical SAM superfamily IX88_RS15060 PF00563 EAL domain IX88_RS15060 PF12792 CSS motif domain associated with EAL IX88_RS15065 PF01197 Ribosomal protein L31 IX88_RS15070 PF13593 SBF-like CPA transporter family (DUF4137) IX88_RS15075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IX88_RS15080 PF07690 Major Facilitator Superfamily IX88_RS15085 PF13654 AAA domain IX88_RS15085 PF05362 Lon protease (S16) C-terminal proteolytic domain IX88_RS15090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS15090 PF03466 LysR substrate binding domain IX88_RS15095 PF01551 Peptidase family M23 IX88_RS15095 PF01476 LysM domain IX88_RS15100 PF01975 Survival protein SurE IX88_RS15115 PF07943 Penicillin-binding protein 5, C-terminal domain IX88_RS15115 PF00768 D-alanyl-D-alanine carboxypeptidase IX88_RS15120 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS15125 PF00293 NUDIX domain IX88_RS15125 PF13344 Haloacid dehalogenase-like hydrolase IX88_RS15135 PF04356 Protein of unknown function (DUF489) IX88_RS15140 PF00206 Lyase IX88_RS15140 PF08328 Adenylosuccinate lyase C-terminal IX88_RS15155 PF08496 Peptidase family S49 N-terminal IX88_RS15155 PF01343 Peptidase family S49 IX88_RS15160 PF00005 ABC transporter IX88_RS15165 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS15170 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS15175 PF12849 PBP superfamily domain IX88_RS15180 PF00324 Amino acid permease IX88_RS15185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IX88_RS15185 PF00205 Thiamine pyrophosphate enzyme, central domain IX88_RS15185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IX88_RS15190 PF01037 Lrp/AsnC ligand binding domain IX88_RS15195 PF00171 Aldehyde dehydrogenase family IX88_RS15200 PF00282 Pyridoxal-dependent decarboxylase conserved domain IX88_RS15205 PF00202 Aminotransferase class-III IX88_RS15225 PF00487 Fatty acid desaturase IX88_RS15230 PF00111 2Fe-2S iron-sulfur cluster binding domain IX88_RS15230 PF00970 Oxidoreductase FAD-binding domain IX88_RS15230 PF00175 Oxidoreductase NAD-binding domain IX88_RS15235 PF00440 Bacterial regulatory proteins, tetR family IX88_RS15245 PF18339 RapA N-terminal Tudor like domain 1 IX88_RS15245 PF18337 RapA N-terminal Tudor like domain IX88_RS15245 PF12137 RNA polymerase recycling family C-terminal IX88_RS15245 PF00271 Helicase conserved C-terminal domain IX88_RS15245 PF00176 SNF2 family N-terminal domain IX88_RS15250 PF00849 RNA pseudouridylate synthase IX88_RS15260 PF00202 Aminotransferase class-III IX88_RS15265 PF02581 Thiamine monophosphate synthase IX88_RS15290 PF05193 Peptidase M16 inactive domain IX88_RS15290 PF00675 Insulinase (Peptidase family M16) IX88_RS15295 PF02567 Phenazine biosynthesis-like protein IX88_RS15300 PF00375 Sodium:dicarboxylate symporter family IX88_RS15305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS15305 PF03466 LysR substrate binding domain IX88_RS15310 PF06779 Uncharacterised MFS-type transporter YbfB IX88_RS15325 PF00180 Isocitrate/isopropylmalate dehydrogenase IX88_RS15330 PF00849 RNA pseudouridylate synthase IX88_RS15335 PF03971 Monomeric isocitrate dehydrogenase IX88_RS15345 PF00768 D-alanyl-D-alanine carboxypeptidase IX88_RS15345 PF07943 Penicillin-binding protein 5, C-terminal domain IX88_RS15350 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS15355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IX88_RS15360 PF03441 FAD binding domain of DNA photolyase IX88_RS15360 PF00875 DNA photolyase IX88_RS15390 PF02350 UDP-N-acetylglucosamine 2-epimerase IX88_RS15405 PF03060 Nitronate monooxygenase IX88_RS15410 PF01207 Dihydrouridine synthase (Dus) IX88_RS15415 PF07759 Protein of unknown function (DUF1615) IX88_RS15425 PF00696 Amino acid kinase family IX88_RS15425 PF01472 PUA domain IX88_RS15430 PF01018 GTP1/OBG IX88_RS15430 PF01926 50S ribosome-binding GTPase IX88_RS15445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_RS15445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IX88_RS15450 PF00892 EamA-like transporter family IX88_RS15460 PF17757 UvrB interaction domain IX88_RS15460 PF00271 Helicase conserved C-terminal domain IX88_RS15460 PF04851 Type III restriction enzyme, res subunit IX88_RS15460 PF02151 UvrB/uvrC motif IX88_RS15460 PF12344 Ultra-violet resistance protein B IX88_RS15470 PF17151 Periplasmic sensor domain IX88_RS15470 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS15480 PF00155 Aminotransferase class I and II IX88_RS15505 PF00106 short chain dehydrogenase IX88_RS15510 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IX88_RS15515 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IX88_RS15520 PF11967 Recombination protein O N terminal IX88_RS15520 PF02565 Recombination protein O C terminal IX88_RS15530 PF01926 50S ribosome-binding GTPase IX88_RS15530 PF07650 KH domain IX88_RS15535 PF00035 Double-stranded RNA binding motif IX88_RS15535 PF14622 Ribonuclease-III-like IX88_RS15545 PF10502 Signal peptidase, peptidase S26 IX88_RS15550 PF00009 Elongation factor Tu GTP binding domain IX88_RS15550 PF06421 GTP-binding protein LepA C-terminus IX88_RS15550 PF00679 Elongation factor G C-terminus IX88_RS15550 PF03144 Elongation factor Tu domain 2 IX88_RS15560 PF13180 PDZ domain IX88_RS15565 PF02910 Fumarate reductase flavoprotein C-term IX88_RS15565 PF00890 FAD binding domain IX88_RS15575 PF02223 Thymidylate kinase IX88_RS15580 PF02618 YceG-like family IX88_RS15585 PF01063 Amino-transferase class IV IX88_RS15600 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS15605 PF00528 Binding-protein-dependent transport system inner membrane component IX88_RS15610 PF12857 TOBE-like domain IX88_RS15610 PF00005 ABC transporter IX88_RS15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS15615 PF03466 LysR substrate binding domain IX88_RS15625 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IX88_RS15625 PF14602 Hexapeptide repeat of succinyl-transferase IX88_RS15625 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS15635 PF06508 Queuosine biosynthesis protein QueC IX88_RS15650 PF00578 AhpC/TSA family IX88_RS15660 PF00293 NUDIX domain IX88_RS15660 PF01467 Cytidylyltransferase-like IX88_RS15665 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS15670 PF01784 NIF3 (NGG1p interacting factor 3) IX88_RS15680 PF07690 Major Facilitator Superfamily IX88_RS15685 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IX88_RS15685 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IX88_RS15685 PF02769 AIR synthase related protein, C-terminal domain IX88_RS15690 PF01966 HD domain IX88_RS15695 PF07499 RuvA, C-terminal domain IX88_RS15695 PF01330 RuvA N terminal domain IX88_RS15700 PF05496 Holliday junction DNA helicase RuvB P-loop domain IX88_RS15700 PF05491 RuvB C-terminal winged helix domain IX88_RS15700 PF17864 RuvB AAA lid domain IX88_RS15705 PF01546 Peptidase family M20/M25/M40 IX88_RS15705 PF07687 Peptidase dimerisation domain IX88_RS15710 PF03061 Thioesterase superfamily IX88_RS15715 PF01618 MotA/TolQ/ExbB proton channel family IX88_RS15720 PF02472 Biopolymer transport protein ExbD/TolR IX88_RS15730 PF04052 TolB amino-terminal domain IX88_RS15730 PF07676 WD40-like Beta Propeller Repeat IX88_RS15735 PF00691 OmpA family IX88_RS15745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IX88_RS15750 PF08032 RNA 2'-O ribose methyltransferase substrate binding IX88_RS15750 PF00588 SpoU rRNA Methylase family IX88_RS15780 PF11638 DnaA N-terminal domain IX88_RS15780 PF08299 Bacterial dnaA protein helix-turn-helix IX88_RS15780 PF00308 Bacterial dnaA protein IX88_RS15785 PF01594 AI-2E family transporter IX88_RS15790 PF00586 AIR synthase related protein, N-terminal domain IX88_RS15790 PF02769 AIR synthase related protein, C-terminal domain IX88_RS15795 PF00551 Formyl transferase IX88_RS15800 PF12697 Alpha/beta hydrolase family IX88_RS15805 PF06965 Na+/H+ antiporter 1 IX88_RS15805 PF01343 Peptidase family S49 IX88_RS15815 PF00753 Metallo-beta-lactamase superfamily IX88_RS15815 PF03772 Competence protein IX88_RS15815 PF13567 Domain of unknown function (DUF4131) IX88_RS15820 PF00005 ABC transporter IX88_RS15825 PF02687 FtsX-like permease family IX88_RS15825 PF12704 MacB-like periplasmic core domain IX88_RS15835 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IX88_RS15845 PF00266 Aminotransferase class-V IX88_RS15855 PF13533 Biotin-lipoyl like IX88_RS15875 PF00535 Glycosyl transferase family 2 IX88_RS15890 PF03989 DNA gyrase C-terminal domain, beta-propeller IX88_RS15890 PF00521 DNA gyrase/topoisomerase IV, subunit A IX88_RS15895 PF00766 Electron transfer flavoprotein FAD-binding domain IX88_RS15895 PF01012 Electron transfer flavoprotein domain IX88_RS15900 PF01012 Electron transfer flavoprotein domain IX88_RS15905 PF00589 Phage integrase family IX88_RS15905 PF02899 Phage integrase, N-terminal SAM-like domain IX88_RS15910 PF01810 LysE type translocator IX88_RS15915 PF01678 Diaminopimelate epimerase IX88_RS15920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IX88_RS15920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IX88_RS15930 PF00324 Amino acid permease IX88_RS15935 PF18073 Rubredoxin metal binding domain IX88_RS15945 PF00152 tRNA synthetases class II (D, K and N) IX88_RS15950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IX88_RS15950 PF11890 Domain of unknown function (DUF3410) IX88_RS15950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IX88_RS15955 PF06803 Protein of unknown function (DUF1232) IX88_RS15960 PF02634 FdhD/NarQ family IX88_RS15965 PF00384 Molybdopterin oxidoreductase IX88_RS15970 PF02595 Glycerate kinase family IX88_RS15980 PF00106 short chain dehydrogenase IX88_RS15985 PF00881 Nitroreductase family IX88_RS16010 PF00665 Integrase core domain IX88_RS16010 PF13276 HTH-like domain IX88_RS16010 PF13333 Integrase core domain IX88_RS16025 PF13411 MerR HTH family regulatory protein IX88_RS16030 PF02567 Phenazine biosynthesis-like protein IX88_RS16040 PF00550 Phosphopantetheine attachment site IX88_RS16040 PF00668 Condensation domain IX88_RS16040 PF13193 AMP-binding enzyme C-terminal domain IX88_RS16040 PF00975 Thioesterase domain IX88_RS16040 PF00501 AMP-binding enzyme IX88_RS16050 PF04717 Type VI secretion system, phage-baseplate injector IX88_RS16050 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) IX88_RS16050 PF13296 Putative type VI secretion system Rhs element Vgr IX88_RS16055 PF00440 Bacterial regulatory proteins, tetR family IX88_RS16135 PF00589 Phage integrase family IX88_RS16135 PF13356 Arm DNA-binding domain IX88_RS16145 PF01272 Transcription elongation factor, GreA/GreB, C-term IX88_RS16145 PF03449 Transcription elongation factor, N-terminal IX88_RS16150 PF00497 Bacterial extracellular solute-binding proteins, family 3 IX88_RS16150 PF01464 Transglycosylase SLT domain IX88_RS16160 PF01171 PP-loop family IX88_RS16165 PF01464 Transglycosylase SLT domain IX88_RS16170 PF01435 Peptidase family M48 IX88_RS16180 PF00873 AcrB/AcrD/AcrF family IX88_RS16185 PF03009 Glycerophosphoryl diester phosphodiesterase family IX88_RS16190 PF00753 Metallo-beta-lactamase superfamily IX88_RS16195 PF01219 Prokaryotic diacylglycerol kinase IX88_RS16200 PF00118 TCP-1/cpn60 chaperonin family IX88_RS16205 PF00166 Chaperonin 10 Kd subunit IX88_RS16210 PF00149 Calcineurin-like phosphoesterase IX88_RS16215 PF00781 Diacylglycerol kinase catalytic domain IX88_RS16220 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain IX88_RS16220 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain IX88_RS16225 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IX88_RS16225 PF01266 FAD dependent oxidoreductase IX88_RS16230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IX88_RS16230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IX88_RS16235 PF00083 Sugar (and other) transporter IX88_RS16250 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IX88_RS16250 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IX88_RS16265 PF16655 PhoD-like phosphatase, N-terminal domain IX88_RS16265 PF09423 PhoD-like phosphatase IX88_RS16285 PF00809 Pterin binding enzyme IX88_RS16290 PF06480 FtsH Extracellular IX88_RS16290 PF17862 AAA+ lid domain IX88_RS16290 PF00004 ATPase family associated with various cellular activities (AAA) IX88_RS16290 PF01434 Peptidase family M41 IX88_RS16295 PF01728 FtsJ-like methyltransferase IX88_RS16300 PF01985 CRS1 / YhbY (CRM) domain IX88_RS16315 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IX88_RS16315 PF00117 Glutamine amidotransferase class-I IX88_RS16320 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IX88_RS16320 PF02142 MGS-like domain IX88_RS16320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_RS16325 PF01272 Transcription elongation factor, GreA/GreB, C-term IX88_RS16325 PF03449 Transcription elongation factor, N-terminal IX88_RS16330 PF00132 Bacterial transferase hexapeptide (six repeats) IX88_RS16335 PF00582 Universal stress protein family IX88_RS16340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IX88_RS16350 PF09587 Bacterial capsule synthesis protein PGA_cap IX88_RS16365 PF00999 Sodium/hydrogen exchanger family IX88_RS16370 PF04228 Putative neutral zinc metallopeptidase IX88_RS16375 PF05661 Protein of unknown function (DUF808) IX88_RS16380 PF00579 tRNA synthetases class I (W and Y) IX88_RS16385 PF00549 CoA-ligase IX88_RS16385 PF02629 CoA binding domain IX88_RS16390 PF08442 ATP-grasp domain IX88_RS16390 PF00549 CoA-ligase IX88_RS16395 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS16395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_RS16400 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IX88_RS16400 PF00364 Biotin-requiring enzyme IX88_RS16400 PF02817 e3 binding domain IX88_RS16405 PF02779 Transketolase, pyrimidine binding domain IX88_RS16405 PF16870 2-oxoglutarate dehydrogenase C-terminal IX88_RS16405 PF16078 2-oxoglutarate dehydrogenase N-terminus IX88_RS16405 PF00676 Dehydrogenase E1 component IX88_RS16410 PF13085 2Fe-2S iron-sulfur cluster binding domain IX88_RS16415 PF00890 FAD binding domain IX88_RS16415 PF02910 Fumarate reductase flavoprotein C-term IX88_RS16420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IX88_RS16425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IX88_RS16430 PF00285 Citrate synthase, C-terminal domain IX88_RS16440 PF00581 Rhodanese-like domain IX88_RS16440 PF17773 UPF0176 acylphosphatase like domain IX88_RS16455 PF04545 Sigma-70, region 4 IX88_RS16455 PF00140 Sigma-70 factor, region 1.2 IX88_RS16455 PF04546 Sigma-70, non-essential region IX88_RS16455 PF04542 Sigma-70 region 2 IX88_RS16455 PF04539 Sigma-70 region 3 IX88_RS16455 PF03979 Sigma-70 factor, region 1.1 IX88_RS16460 PF04359 Protein of unknown function (DUF493) IX88_RS16465 PF03099 Biotin/lipoate A/B protein ligase family IX88_RS16475 PF00465 Iron-containing alcohol dehydrogenase IX88_RS16480 PF13520 Amino acid permease IX88_RS16485 PF03358 NADPH-dependent FMN reductase IX88_RS16490 PF01638 HxlR-like helix-turn-helix IX88_RS16495 PF00588 SpoU rRNA Methylase family IX88_RS16500 PF10414 Sirohaem synthase dimerisation region IX88_RS16500 PF14824 Sirohaem biosynthesis protein central IX88_RS16500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IX88_RS16505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX88_RS16505 PF02403 Seryl-tRNA synthetase N-terminal domain IX88_RS16515 PF03548 Outer membrane lipoprotein carrier protein LolA IX88_RS16520 PF01016 Ribosomal L27 protein IX88_RS16525 PF00829 Ribosomal prokaryotic L21 protein IX88_RS16535 PF00348 Polyprenyl synthetase IX88_RS16545 PF01569 PAP2 superfamily IX88_RS16550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IX88_RS16550 PF00529 HlyD membrane-fusion protein of T1SS IX88_RS16555 PF00873 AcrB/AcrD/AcrF family IX88_RS16560 PF02321 Outer membrane efflux protein IX88_RS16565 PF01906 Putative heavy-metal-binding IX88_RS16570 PF01906 Putative heavy-metal-binding IX88_RS16590 PF00133 tRNA synthetases class I (I, L, M and V) IX88_RS16590 PF10458 Valyl tRNA synthetase tRNA binding arm IX88_RS16590 PF08264 Anticodon-binding domain of tRNA IX88_RS16610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IX88_RS16610 PF03466 LysR substrate binding domain IX88_RS16615 PF00909 Ammonium Transporter Family IX88_RS16625 PF08521 Two-component sensor kinase N-terminal IX88_RS16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS16625 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS16630 PF00072 Response regulator receiver domain IX88_RS16630 PF00486 Transcriptional regulatory protein, C terminal IX88_RS16635 PF08019 Phosphoethanolamine transferase EptA/EptB IX88_RS16635 PF00884 Sulfatase IX88_RS16655 PF01734 Patatin-like phospholipase IX88_RS16665 PF01145 SPFH domain / Band 7 family IX88_RS16670 PF04237 YjbR IX88_RS16675 PF00348 Polyprenyl synthetase IX88_RS16680 PF04303 PrpF protein IX88_RS16685 PF00324 Amino acid permease IX88_RS16695 PF01965 DJ-1/PfpI family IX88_RS16700 PF09277 Erythronolide synthase, docking IX88_RS16700 PF02801 Beta-ketoacyl synthase, C-terminal domain IX88_RS16700 PF08659 KR domain IX88_RS16700 PF08990 Erythronolide synthase docking IX88_RS16700 PF00550 Phosphopantetheine attachment site IX88_RS16700 PF14765 Polyketide synthase dehydratase IX88_RS16700 PF08240 Alcohol dehydrogenase GroES-like domain IX88_RS16700 PF00698 Acyl transferase domain IX88_RS16700 PF00109 Beta-ketoacyl synthase, N-terminal domain IX88_RS16700 PF16197 Ketoacyl-synthetase C-terminal extension IX88_RS16705 PF06719 AraC-type transcriptional regulator N-terminus IX88_RS16705 PF12833 Helix-turn-helix domain IX88_RS16710 PF02673 Bacitracin resistance protein BacA IX88_RS16730 PF02525 Flavodoxin-like fold IX88_RS16745 PF01507 Phosphoadenosine phosphosulfate reductase family IX88_RS16750 PF06974 Protein of unknown function (DUF1298) IX88_RS16750 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain IX88_RS16760 PF10150 Ribonuclease E/G family IX88_RS16760 PF00575 S1 RNA binding domain IX88_RS16765 PF02545 Maf-like protein IX88_RS16770 PF04093 rod shape-determining protein MreD IX88_RS16775 PF04085 rod shape-determining protein MreC IX88_RS16785 PF02686 Glu-tRNAGln amidotransferase C subunit IX88_RS16790 PF01425 Amidase IX88_RS16795 PF02934 GatB/GatE catalytic domain IX88_RS16795 PF02637 GatB domain IX88_RS16820 PF05992 SbmA/BacA-like family IX88_RS16825 PF13291 ACT domain IX88_RS16825 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS16830 PF01734 Patatin-like phospholipase IX88_RS16835 PF01235 Sodium:alanine symporter family IX88_RS16845 PF00881 Nitroreductase family IX88_RS16850 PF07690 Major Facilitator Superfamily IX88_RS16855 PF12805 FUSC-like inner membrane protein yccS IX88_RS16865 PF00175 Oxidoreductase NAD-binding domain IX88_RS16865 PF00667 FAD binding domain IX88_RS16865 PF00258 Flavodoxin IX88_RS16905 PF03734 L,D-transpeptidase catalytic domain IX88_RS16905 PF17969 L,D-transpeptidase C-terminal domain IX88_RS16910 PF04304 Protein of unknown function (DUF454) IX88_RS16920 PF08085 Entericidin EcnA/B family IX88_RS16925 PF07687 Peptidase dimerisation domain IX88_RS16925 PF01546 Peptidase family M20/M25/M40 IX88_RS16935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS16935 PF01627 Hpt domain IX88_RS16935 PF00072 Response regulator receiver domain IX88_RS16935 PF01584 CheW-like domain IX88_RS16940 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IX88_RS16940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IX88_RS16945 PF01584 CheW-like domain IX88_RS16950 PF00072 Response regulator receiver domain IX88_RS16955 PF00072 Response regulator receiver domain IX88_RS16970 PF00873 AcrB/AcrD/AcrF family IX88_RS16975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IX88_RS16975 PF03129 Anticodon binding domain IX88_RS16975 PF04073 Aminoacyl-tRNA editing domain IX88_RS16980 PF07411 Domain of unknown function (DUF1508) IX88_RS16985 PF03831 PhnA domain IX88_RS16985 PF08274 PhnA Zinc-Ribbon IX88_RS16990 PF04343 Protein of unknown function, DUF488 IX88_RS17000 PF01571 Aminomethyltransferase folate-binding domain IX88_RS17005 PF10411 Disulfide bond isomerase protein N-terminus IX88_RS17005 PF13098 Thioredoxin-like domain IX88_RS17020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IX88_RS17025 PF07715 TonB-dependent Receptor Plug Domain IX88_RS17025 PF00593 TonB dependent receptor IX88_RS17030 PF02245 Methylpurine-DNA glycosylase (MPG) IX88_RS17035 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IX88_RS17035 PF06827 Zinc finger found in FPG and IleRS IX88_RS17035 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IX88_RS17050 PF01741 Large-conductance mechanosensitive channel, MscL IX88_RS17055 PF03144 Elongation factor Tu domain 2 IX88_RS17055 PF00009 Elongation factor Tu GTP binding domain IX88_RS17055 PF00679 Elongation factor G C-terminus IX88_RS17060 PF00860 Permease family IX88_RS17065 PF08468 Methyltransferase small domain N-terminal IX88_RS17065 PF05175 Methyltransferase small domain IX88_RS17070 PF00324 Amino acid permease IX88_RS17075 PF01139 tRNA-splicing ligase RtcB IX88_RS17085 PF00691 OmpA family IX88_RS17085 PF13505 Outer membrane protein beta-barrel domain IX88_RS17095 PF00108 Thiolase, N-terminal domain IX88_RS17095 PF02803 Thiolase, C-terminal domain IX88_RS17105 PF00893 Small Multidrug Resistance protein IX88_RS17115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IX88_RS17115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IX88_RS17120 PF01011 PQQ enzyme repeat IX88_RS17125 PF04966 Carbohydrate-selective porin, OprB family IX88_RS17130 PF02515 CoA-transferase family III IX88_RS17135 PF12833 Helix-turn-helix domain IX88_RS17135 PF02311 AraC-like ligand binding domain IX88_RS17140 PF00108 Thiolase, N-terminal domain IX88_RS17140 PF02803 Thiolase, C-terminal domain IX88_RS17145 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS17145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IX88_RS17145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IX88_RS17160 PF13673 Acetyltransferase (GNAT) domain IX88_RS17170 PF03006 Haemolysin-III related IX88_RS17175 PF00083 Sugar (and other) transporter IX88_RS17175 PF07690 Major Facilitator Superfamily IX88_RS17185 PF07516 SecA Wing and Scaffold domain IX88_RS17185 PF01043 SecA preprotein cross-linking domain IX88_RS17185 PF07517 SecA DEAD-like domain IX88_RS17185 PF02810 SEC-C motif IX88_RS17190 PF00578 AhpC/TSA family IX88_RS17190 PF10417 C-terminal domain of 1-Cys peroxiredoxin IX88_RS17195 PF00753 Metallo-beta-lactamase superfamily IX88_RS17210 PF08245 Mur ligase middle domain IX88_RS17210 PF02875 Mur ligase family, glutamate ligase domain IX88_RS17215 PF01039 Carboxyl transferase domain IX88_RS17220 PF00290 Tryptophan synthase alpha chain IX88_RS17245 PF00291 Pyridoxal-phosphate dependent enzyme IX88_RS17250 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IX88_RS17255 PF07715 TonB-dependent Receptor Plug Domain IX88_RS17255 PF00593 TonB dependent receptor IX88_RS17260 PF01923 Cobalamin adenosyltransferase IX88_RS17265 PF03009 Glycerophosphoryl diester phosphodiesterase family IX88_RS17280 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IX88_RS17285 PF00486 Transcriptional regulatory protein, C terminal IX88_RS17285 PF00072 Response regulator receiver domain IX88_RS17290 PF00672 HAMP domain IX88_RS17290 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS17300 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS17300 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_RS17300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS17300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS17305 PF12806 Acetyl-CoA dehydrogenase C-terminal like IX88_RS17305 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS17305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS17305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS17310 PF06146 Phosphate-starvation-inducible E IX88_RS17330 PF00593 TonB dependent receptor IX88_RS17330 PF07715 TonB-dependent Receptor Plug Domain IX88_RS17340 PF01336 OB-fold nucleic acid binding domain IX88_RS17340 PF00152 tRNA synthetases class II (D, K and N) IX88_RS17340 PF02938 GAD domain IX88_RS17350 PF00534 Glycosyl transferases group 1 IX88_RS17350 PF13439 Glycosyltransferase Family 4 IX88_RS17355 PF00535 Glycosyl transferase family 2 IX88_RS17360 PF13439 Glycosyltransferase Family 4 IX88_RS17360 PF00534 Glycosyl transferases group 1 IX88_RS17380 PF13439 Glycosyltransferase Family 4 IX88_RS17380 PF00534 Glycosyl transferases group 1 IX88_RS17385 PF01522 Polysaccharide deacetylase IX88_RS17395 PF01063 Amino-transferase class IV IX88_RS17400 PF03710 Glutamate-ammonia ligase adenylyltransferase IX88_RS17400 PF08335 GlnD PII-uridylyltransferase IX88_RS17405 PF00672 HAMP domain IX88_RS17405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IX88_RS17405 PF00512 His Kinase A (phospho-acceptor) domain IX88_RS17405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IX88_RS17405 PF01627 Hpt domain IX88_RS17405 PF00072 Response regulator receiver domain IX88_RS17425 PF02547 Queuosine biosynthesis protein IX88_RS17440 PF01702 Queuine tRNA-ribosyltransferase IX88_RS17445 PF02699 Preprotein translocase subunit IX88_RS17450 PF13721 SecD export protein N-terminal TM region IX88_RS17450 PF02355 Protein export membrane protein IX88_RS17450 PF07549 SecD/SecF GG Motif IX88_RS17455 PF02355 Protein export membrane protein IX88_RS17455 PF07549 SecD/SecF GG Motif IX88_RS17460 PF04127 DNA / pantothenate metabolism flavoprotein IX88_RS17460 PF02441 Flavoprotein IX88_RS17465 PF04002 RadC-like JAB domain IX88_RS17470 PF01062 Bestrophin, RFP-TM, chloride channel IX88_RS17475 PF02811 PHP domain IX88_RS17480 PF04279 Intracellular septation protein A IX88_RS17485 PF03795 YCII-related domain IX88_RS17495 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IX88_RS17495 PF01266 FAD dependent oxidoreductase IX88_RS17505 PF04461 Protein of unknown function (DUF520) IX88_RS17515 PF03061 Thioesterase superfamily IX88_RS17520 PF00085 Thioredoxin IX88_RS17525 PF00561 alpha/beta hydrolase fold IX88_RS17530 PF04273 Putative phosphatase (DUF442) IX88_RS17530 PF00753 Metallo-beta-lactamase superfamily IX88_RS17540 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IX88_RS17540 PF07992 Pyridine nucleotide-disulphide oxidoreductase IX88_RS17575 PF00990 Diguanylate cyclase, GGDEF domain IX88_RS17575 PF17152 Periplasmic sensor domain IX88_RS17580 PF01389 OmpA-like transmembrane domain IX88_RS17580 PF00691 OmpA family IX88_RS17585 PF00149 Calcineurin-like phosphoesterase IX88_RS17585 PF10518 TAT (twin-arginine translocation) pathway signal sequence IX88_RS17590 PF13091 PLD-like domain IX88_RS17600 PF01926 50S ribosome-binding GTPase IX88_RS17600 PF13167 GTP-binding GTPase N-terminal IX88_RS17600 PF16360 GTP-binding GTPase Middle Region IX88_RS17620 PF00149 Calcineurin-like phosphoesterase IX88_RS17625 PF00398 Ribosomal RNA adenine dimethylase IX88_RS17630 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IX88_RS17635 PF00572 Ribosomal protein L13 IX88_RS17640 PF00380 Ribosomal protein S9/S16 IX88_RS17645 PF13417 Glutathione S-transferase, N-terminal domain IX88_RS17645 PF00043 Glutathione S-transferase, C-terminal domain IX88_RS17650 PF04386 Stringent starvation protein B IX88_RS17660 PF00289 Biotin carboxylase, N-terminal domain IX88_RS17660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IX88_RS17660 PF02785 Biotin carboxylase C-terminal domain IX88_RS17660 PF00364 Biotin-requiring enzyme IX88_RS17665 PF00378 Enoyl-CoA hydratase/isomerase IX88_RS17670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS17670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS17670 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS17675 PF01039 Carboxyl transferase domain IX88_RS17690 PF17932 Tetracyclin repressor-like, C-terminal domain IX88_RS17690 PF00440 Bacterial regulatory proteins, tetR family IX88_RS17695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS17695 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS17695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS17740 PF01066 CDP-alcohol phosphatidyltransferase IX88_RS17745 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IX88_RS17765 PF00056 lactate/malate dehydrogenase, NAD binding domain IX88_RS17765 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IX88_RS17775 PF01464 Transglycosylase SLT domain IX88_RS17775 PF10145 Phage-related minor tail protein IX88_RS17775 PF01551 Peptidase family M23 IX88_RS17780 PF00919 Uncharacterized protein family UPF0004 IX88_RS17780 PF04055 Radical SAM superfamily IX88_RS17780 PF01938 TRAM domain IX88_RS17785 PF02562 PhoH-like protein IX88_RS17790 PF02130 Uncharacterized protein family UPF0054 IX88_RS17815 PF03358 NADPH-dependent FMN reductase IX88_RS17820 PF03631 Virulence factor BrkB IX88_RS17825 PF00892 EamA-like transporter family IX88_RS17830 PF12833 Helix-turn-helix domain IX88_RS17835 PF01557 Fumarylacetoacetate (FAA) hydrolase family IX88_RS17880 PF00575 S1 RNA binding domain IX88_RS17880 PF00773 RNB domain IX88_RS17880 PF08206 Ribonuclease B OB domain IX88_RS17880 PF08461 Ribonuclease R winged-helix domain IX88_RS17880 PF17876 Cold shock domain IX88_RS17885 PF01432 Peptidase family M3 IX88_RS17890 PF09526 Probable metal-binding protein (DUF2387) IX88_RS17920 PF03937 Flavinator of succinate dehydrogenase IX88_RS17925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IX88_RS17925 PF02770 Acyl-CoA dehydrogenase, middle domain IX88_RS17925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IX88_RS17930 PF00743 Flavin-binding monooxygenase-like IX88_RS17935 PF01196 Ribosomal protein L17 IX88_RS17940 PF01000 RNA polymerase Rpb3/RpoA insert domain IX88_RS17940 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IX88_RS17940 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IX88_RS17945 PF00163 Ribosomal protein S4/S9 N-terminal domain IX88_RS17945 PF01479 S4 domain IX88_RS17950 PF00411 Ribosomal protein S11 IX88_RS17955 PF00416 Ribosomal protein S13/S18 IX88_RS17960 PF00444 Ribosomal protein L36 IX88_RS17965 PF00344 SecY translocase IX88_RS17970 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IX88_RS17975 PF00327 Ribosomal protein L30p/L7e IX88_RS17990 PF00347 Ribosomal protein L6