IX88_RS00035 SM00662 RNA polymerases D IX88_RS00040 SM00363 S4 RNA-binding domain IX88_RS00040 SM01390 IX88_RS00040 IX88_RS00105 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IX88_RS00110 SM01374 IX88_RS00110 IX88_RS00130 SM00322 K homology RNA-binding domain IX88_RS00145 SM01382 IX88_RS00145 IX88_RS00145 SM01383 IX88_RS00145 IX88_RS00165 SM01403 IX88_RS00165 IX88_RS00215 SM00563 Phosphate acyltransferases IX88_RS00230 SM00487 DEAD-like helicases superfamily IX88_RS00230 SM00490 helicase superfamily c-terminal domain IX88_RS00275 SM00382 ATPases associated with a variety of cellular activities IX88_RS00285 SM00487 DEAD-like helicases superfamily IX88_RS00285 SM00490 helicase superfamily c-terminal domain IX88_RS00295 SM00861 Transketolase, pyrimidine binding domain IX88_RS00335 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_RS00430 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_RS00615 SM00072 Guanylate kinase homologues. IX88_RS00620 SM01409 IX88_RS00620 IX88_RS00625 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX88_RS00625 SM00954 Region found in RelA / SpoT proteins IX88_RS00705 SM00965 Secretin and TonB N terminus short domain IX88_RS00725 SM00842 Cell division protein FtsA IX88_RS00860 SM00671 Sel1-like repeats. IX88_RS00865 SM00382 ATPases associated with a variety of cellular activities IX88_RS00880 SM00947 Carbonic anhydrase IX88_RS00885 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS00885 SM00732 Likely ribonuclease with RNase H fold. IX88_RS00890 SM00448 cheY-homologous receiver domain IX88_RS00890 SM00862 Transcriptional regulatory protein, C terminal IX88_RS00895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX88_RS00895 SM00387 Histidine kinase-like ATPases IX88_RS00895 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS00940 SM00474 3'-5' exonuclease IX88_RS00950 SM00382 ATPases associated with a variety of cellular activities IX88_RS00955 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS00970 SM00357 Cold shock protein domain IX88_RS00990 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS01010 SM00477 DNA/RNA non-specific endonuclease IX88_RS01010 SM00892 DNA/RNA non-specific endonuclease IX88_RS01055 SM00255 Toll - interleukin 1 - resistance IX88_RS01080 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS01170 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS01180 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS01225 SM00829 Enoylreductase IX88_RS01240 SM00267 diguanylate cyclase IX88_RS01270 SM00387 Histidine kinase-like ATPases IX88_RS01270 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS01270 SM00448 cheY-homologous receiver domain IX88_RS01280 SM00421 helix_turn_helix, Lux Regulon IX88_RS01280 SM00448 cheY-homologous receiver domain IX88_RS01295 SM00344 helix_turn_helix ASNC type IX88_RS01335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX88_RS01340 SM00937 IX88_RS01340 IX88_RS01365 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_RS01365 SM01240 IX88_RS01365 IX88_RS01375 SM00849 Metallo-beta-lactamase superfamily IX88_RS01420 SM00864 Tubulin/FtsZ family, GTPase domain IX88_RS01420 SM00865 Tubulin/FtsZ family, C-terminal domain IX88_RS01425 SM00842 Cell division protein FtsA IX88_RS01490 SM00267 diguanylate cyclase IX88_RS01555 SM00387 Histidine kinase-like ATPases IX88_RS01555 SM00433 TopoisomeraseII IX88_RS01675 SM00448 cheY-homologous receiver domain IX88_RS01675 SM00862 Transcriptional regulatory protein, C terminal IX88_RS01680 SM00387 Histidine kinase-like ATPases IX88_RS01680 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS01695 SM00450 Rhodanese Homology Domain IX88_RS01810 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS01810 SM00866 IX88_RS01810 IX88_RS01820 SM00833 Cobalamin synthesis protein cobW C-terminal domain IX88_RS01850 SM00346 helix_turn_helix isocitrate lyase regulation IX88_RS01880 SM01130 IX88_RS01880 IX88_RS01905 SM00382 ATPases associated with a variety of cellular activities IX88_RS01935 SM00478 endonuclease III IX88_RS01935 SM00525 IX88_RS01935 IX88_RS01955 SM00829 Enoylreductase IX88_RS01960 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS02000 SM00271 DnaJ molecular chaperone homology domain IX88_RS02145 SM00382 ATPases associated with a variety of cellular activities IX88_RS02160 SM00387 Histidine kinase-like ATPases IX88_RS02160 SM00433 TopoisomeraseII IX88_RS02170 SM00480 DNA polymerase III beta subunit IX88_RS02175 SM00382 ATPases associated with a variety of cellular activities IX88_RS02175 SM00760 Bacterial dnaA protein helix-turn-helix domain IX88_RS02190 SM01234 IX88_RS02190 IX88_RS02260 SM00014 Acid phosphatase homologues IX88_RS02280 SM01001 AIR carboxylase IX88_RS02300 SM00235 Zinc-dependent metalloprotease IX88_RS02305 SM00235 Zinc-dependent metalloprotease IX88_RS02325 SM00849 Metallo-beta-lactamase superfamily IX88_RS02375 SM00248 ankyrin repeats IX88_RS02400 SM00904 Riboflavin kinase IX88_RS02420 SM00382 ATPases associated with a variety of cellular activities IX88_RS02435 SM00062 Bacterial periplasmic substrate-binding proteins IX88_RS02440 SM00062 Bacterial periplasmic substrate-binding proteins IX88_RS02520 SM00644 IX88_RS02520 IX88_RS02545 SM00226 Low molecular weight phosphatase family IX88_RS02555 SM00984 UDP binding domain IX88_RS02600 SM00984 UDP binding domain IX88_RS02630 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS02630 SM00895 IX88_RS02630 IX88_RS02650 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS02650 SM00895 IX88_RS02650 IX88_RS02740 SM00344 helix_turn_helix ASNC type IX88_RS02750 SM01005 Alanine racemase, C-terminal domain IX88_RS02820 SM00421 helix_turn_helix, Lux Regulon IX88_RS02835 SM00823 Phosphopantetheine attachment site IX88_RS02835 SM01294 IX88_RS02835 IX88_RS02840 SM00823 Phosphopantetheine attachment site IX88_RS02840 SM00824 Thioesterase IX88_RS02955 SM00836 DALR anticodon binding domain IX88_RS02955 SM01016 Arginyl tRNA synthetase N terminal dom IX88_RS02960 SM00919 Malic enzyme, NAD binding domain IX88_RS02960 SM01274 IX88_RS02960 IX88_RS02980 SM00382 ATPases associated with a variety of cellular activities IX88_RS03030 SM00382 ATPases associated with a variety of cellular activities IX88_RS03050 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS03165 SM00422 helix_turn_helix, mercury resistance IX88_RS03175 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS03195 SM00641 Glycosyl hydrolases family 25 IX88_RS03210 SM01091 Transporter associated domain IX88_RS03230 SM00434 DNA Topoisomerase IV IX88_RS03265 SM01130 IX88_RS03265 IX88_RS03270 SM01007 Class II Aldolase and Adducin N-terminal domain IX88_RS03275 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS03280 SM00382 ATPases associated with a variety of cellular activities IX88_RS03290 SM00938 Nitrogen regulatory protein P-II IX88_RS03355 SM00245 tail specific protease IX88_RS03360 SM00382 ATPases associated with a variety of cellular activities IX88_RS03360 SM00448 cheY-homologous receiver domain IX88_RS03365 SM00387 Histidine kinase-like ATPases IX88_RS03365 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS03370 SM00421 helix_turn_helix, Lux Regulon IX88_RS03370 SM00448 cheY-homologous receiver domain IX88_RS03400 SM00899 IX88_RS03400 IX88_RS03490 SM00448 cheY-homologous receiver domain IX88_RS03490 SM00850 LytTr DNA-binding domain IX88_RS03520 SM00528 Domain in histone-like proteins of HNS family IX88_RS03530 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_RS03540 SM00240 Forkhead associated domain IX88_RS03590 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. IX88_RS03590 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. IX88_RS03595 SM00649 Ribosomal protein L11/L12 IX88_RS03620 SM00663 RNA polymerase I subunit A N-terminus IX88_RS03735 SM00387 Histidine kinase-like ATPases IX88_RS03760 SM00422 helix_turn_helix, mercury resistance IX88_RS03795 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_RS03795 SM00465 GIY-YIG type nucleases (URI domain) IX88_RS03810 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS03820 SM00346 helix_turn_helix isocitrate lyase regulation IX88_RS03840 SM00732 Likely ribonuclease with RNase H fold. IX88_RS03855 SM00028 Tetratricopeptide repeats IX88_RS03865 SM00967 RNA 2'-O ribose methyltransferase substrate binding IX88_RS03925 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS04030 SM00382 ATPases associated with a variety of cellular activities IX88_RS04040 SM01387 IX88_RS04040 IX88_RS04045 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS04045 SM00322 K homology RNA-binding domain IX88_RS04060 SM00271 DnaJ molecular chaperone homology domain IX88_RS04080 SM00487 DEAD-like helicases superfamily IX88_RS04080 SM00490 helicase superfamily c-terminal domain IX88_RS04110 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_RS04110 SM01091 Transporter associated domain IX88_RS04150 SM00849 Metallo-beta-lactamase superfamily IX88_RS04215 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS04245 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS04250 SM00363 S4 RNA-binding domain IX88_RS04290 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. IX88_RS04330 SM01329 IX88_RS04330 IX88_RS04345 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS04350 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS04360 SM00870 IX88_RS04360 IX88_RS04375 SM00859 Semialdehyde dehydrogenase, NAD binding domain IX88_RS04410 SM00382 ATPases associated with a variety of cellular activities IX88_RS04420 SM00829 Enoylreductase IX88_RS04435 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain IX88_RS04435 SM00437 Bacterial DNA topoisomerase I DNA-binding domain IX88_RS04435 SM00493 IX88_RS04435 IX88_RS04455 SM00360 RNA recognition motif IX88_RS04595 SM00671 Sel1-like repeats. IX88_RS04610 SM00917 LeuA allosteric (dimerisation) domain IX88_RS04615 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. IX88_RS04635 SM00382 ATPases associated with a variety of cellular activities IX88_RS04635 SM00994 ClpX C4-type zinc finger IX88_RS04635 SM01086 C-terminal, D2-small domain, of ClpB protein IX88_RS04710 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_RS04710 SM00245 tail specific protease IX88_RS04720 SM00014 Acid phosphatase homologues IX88_RS04730 SM00562 IX88_RS04730 IX88_RS04740 SM00028 Tetratricopeptide repeats IX88_RS04765 SM00564 beta-propeller repeat IX88_RS04790 SM00450 Rhodanese Homology Domain IX88_RS04800 SM00479 IX88_RS04800 IX88_RS04820 SM00382 ATPases associated with a variety of cellular activities IX88_RS04865 SM00052 Putative diguanylate phosphodiesterase IX88_RS04865 SM00267 diguanylate cyclase IX88_RS04875 SM00052 Putative diguanylate phosphodiesterase IX88_RS04890 SM01236 IX88_RS04890 IX88_RS04980 SM01002 Alanine dehydrogenase/PNT, C-terminal domain IX88_RS04980 SM01003 Alanine dehydrogenase/PNT, N-terminal domain IX88_RS05020 SM00073 Histidine Phosphotransfer domain IX88_RS05020 SM00387 Histidine kinase-like ATPases IX88_RS05020 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS05020 SM00448 cheY-homologous receiver domain IX88_RS05040 SM00954 Region found in RelA / SpoT proteins IX88_RS05055 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_RS05100 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IX88_RS05155 SM00873 B3/4 domain IX88_RS05155 SM00874 tRNA synthetase B5 domain IX88_RS05155 SM00896 Ferredoxin-fold anticodon binding domain IX88_RS05160 SM00411 bacterial (prokaryotic) histone like domain IX88_RS05170 SM00357 Cold shock protein domain IX88_RS05170 SM00382 ATPases associated with a variety of cellular activities IX88_RS05170 SM00959 Rho termination factor, N-terminal domain IX88_RS05190 SM00977 TilS substrate C-terminal domain IX88_RS05205 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs IX88_RS05205 SM00474 3'-5' exonuclease IX88_RS05205 SM00475 5'-3' exonuclease IX88_RS05205 SM00482 DNA polymerase A domain IX88_RS05225 SM00382 ATPases associated with a variety of cellular activities IX88_RS05235 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_RS05255 SM00331 Sigma factor PP2C-like phosphatases IX88_RS05575 SM00903 Flavin reductase like domain IX88_RS05655 SM00448 cheY-homologous receiver domain IX88_RS05655 SM00862 Transcriptional regulatory protein, C terminal IX88_RS05660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX88_RS05660 SM00387 Histidine kinase-like ATPases IX88_RS05660 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS05670 SM00267 diguanylate cyclase IX88_RS05695 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IX88_RS05700 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX88_RS05700 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IX88_RS05745 SM00357 Cold shock protein domain IX88_RS05890 SM00382 ATPases associated with a variety of cellular activities IX88_RS05890 SM00962 SRP54-type protein, GTPase domain IX88_RS05890 SM00963 SRP54-type protein, helical bundle domain IX88_RS05910 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS05920 SM00771 ZipA, C-terminal domain (FtsZ-binding) IX88_RS05925 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_RS05925 SM00292 breast cancer carboxy-terminal domain IX88_RS05925 SM00532 Ligase N family IX88_RS05975 SM00363 S4 RNA-binding domain IX88_RS06010 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IX88_RS06015 SM00822 IX88_RS06015 IX88_RS06025 SM00257 Lysin motif IX88_RS06070 SM01400 IX88_RS06070 IX88_RS06105 SM00028 Tetratricopeptide repeats IX88_RS06115 SM00400 zinc finger IX88_RS06115 SM00493 IX88_RS06115 IX88_RS06125 SM00363 S4 RNA-binding domain IX88_RS06170 SM01329 IX88_RS06170 IX88_RS06230 SM00825 Beta-ketoacyl synthase IX88_RS06250 SM00838 Elongation factor G C-terminus IX88_RS06250 SM00889 Elongation factor G, domain IV IX88_RS06290 SM00843 IX88_RS06290 IX88_RS06325 SM00563 Phosphate acyltransferases IX88_RS06395 SM00382 ATPases associated with a variety of cellular activities IX88_RS06440 SM01004 Delta-aminolevulinic acid dehydratase IX88_RS06485 SM00487 DEAD-like helicases superfamily IX88_RS06520 SM01130 IX88_RS06520 IX88_RS06620 SM01322 IX88_RS06620 IX88_RS06660 SM00346 helix_turn_helix isocitrate lyase regulation IX88_RS06680 SM00822 IX88_RS06680 IX88_RS06750 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS06775 SM00822 IX88_RS06775 IX88_RS06790 SM00861 Transketolase, pyrimidine binding domain IX88_RS06800 SM01018 B12 binding domain IX88_RS06860 SM00947 Carbonic anhydrase IX88_RS06870 SM00382 ATPases associated with a variety of cellular activities IX88_RS06965 SM01091 Transporter associated domain IX88_RS07010 SM00988 UreE urease accessory protein, N-terminal domain IX88_RS07055 SM00478 endonuclease III IX88_RS07065 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IX88_RS07085 SM00382 ATPases associated with a variety of cellular activities IX88_RS07085 SM00464 Found in ATP-dependent protease La (LON) IX88_RS07140 SM01011 Aminopeptidase P, N-terminal domain IX88_RS07160 SM00422 helix_turn_helix, mercury resistance IX88_RS07215 SM00479 IX88_RS07215 IX88_RS07220 SM00257 Lysin motif IX88_RS07240 SM00382 ATPases associated with a variety of cellular activities IX88_RS07270 SM00479 IX88_RS07270 IX88_RS07280 SM00267 diguanylate cyclase IX88_RS07380 SM00422 helix_turn_helix, mercury resistance IX88_RS07400 SM00422 helix_turn_helix, mercury resistance IX88_RS07425 SM00422 helix_turn_helix, mercury resistance IX88_RS07450 SM00487 DEAD-like helicases superfamily IX88_RS07520 SM00671 Sel1-like repeats. IX88_RS07525 SM00671 Sel1-like repeats. IX88_RS07570 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS07570 SM00895 IX88_RS07570 IX88_RS07585 SM00344 helix_turn_helix ASNC type IX88_RS07610 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS07620 SM00858 IX88_RS07620 IX88_RS07630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IX88_RS07635 SM01130 IX88_RS07635 IX88_RS07645 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS07645 SM00895 IX88_RS07645 IX88_RS07695 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_RS07700 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS07700 SM00895 IX88_RS07700 IX88_RS07745 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS07835 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain IX88_RS07840 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_RS07850 SM00788 Adenylosuccinate synthetase IX88_RS07870 SM00100 Cyclic nucleotide-monophosphate binding domain IX88_RS07870 SM00419 helix_turn_helix, cAMP Regulatory protein IX88_RS07890 SM00382 ATPases associated with a variety of cellular activities IX88_RS07890 SM01086 C-terminal, D2-small domain, of ClpB protein IX88_RS07905 SM00981 IX88_RS07905 IX88_RS07985 SM00382 ATPases associated with a variety of cellular activities IX88_RS07985 SM00487 DEAD-like helicases superfamily IX88_RS07985 SM00490 helicase superfamily c-terminal domain IX88_RS07985 SM00847 Helicase associated domain (HA2) Add an annotation IX88_RS08045 SM00422 helix_turn_helix, mercury resistance IX88_RS08095 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS08120 SM00357 Cold shock protein domain IX88_RS08190 SM00840 IX88_RS08190 IX88_RS08195 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_RS08215 SM00382 ATPases associated with a variety of cellular activities IX88_RS08225 SM00382 ATPases associated with a variety of cellular activities IX88_RS08270 SM00533 DNA-binding domain of DNA mismatch repair MUTS family IX88_RS08270 SM00534 ATPase domain of DNA mismatch repair MUTS family IX88_RS08275 SM00344 helix_turn_helix ASNC type IX88_RS08285 SM00052 Putative diguanylate phosphodiesterase IX88_RS08310 SM00422 helix_turn_helix, mercury resistance IX88_RS08390 SM00796 Allophanate hydrolase subunit 1 IX88_RS08390 SM00797 Allophanate hydrolase subunit 2 IX88_RS08395 SM00878 Biotin carboxylase C-terminal domain IX88_RS08410 SM00912 haemagglutination activity domain IX88_RS08455 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS08485 SM01060 IX88_RS08485 IX88_RS08505 SM00346 helix_turn_helix isocitrate lyase regulation IX88_RS08515 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS08515 SM00866 IX88_RS08515 IX88_RS08525 SM00382 ATPases associated with a variety of cellular activities IX88_RS08565 SM00346 helix_turn_helix isocitrate lyase regulation IX88_RS08585 SM00346 helix_turn_helix isocitrate lyase regulation IX88_RS08620 SM00882 Coenzyme A transferase IX88_RS08625 SM00882 Coenzyme A transferase IX88_RS08670 SM00878 Biotin carboxylase C-terminal domain IX88_RS08755 SM01236 IX88_RS08755 IX88_RS08760 SM01060 IX88_RS08760 IX88_RS08775 SM00384 DNA binding domain with preference for A/T rich regions IX88_RS08795 SM00344 helix_turn_helix ASNC type IX88_RS08805 SM00387 Histidine kinase-like ATPases IX88_RS08805 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS08805 SM00448 cheY-homologous receiver domain IX88_RS08810 SM00421 helix_turn_helix, Lux Regulon IX88_RS08810 SM00448 cheY-homologous receiver domain IX88_RS08830 SM00382 ATPases associated with a variety of cellular activities IX88_RS08835 SM00062 Bacterial periplasmic substrate-binding proteins IX88_RS08840 SM00062 Bacterial periplasmic substrate-binding proteins IX88_RS08870 SM00450 Rhodanese Homology Domain IX88_RS08875 SM00822 IX88_RS08875 IX88_RS08910 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS08970 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. IX88_RS08990 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS09035 SM00062 Bacterial periplasmic substrate-binding proteins IX88_RS09040 SM00382 ATPases associated with a variety of cellular activities IX88_RS09065 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS09065 SM00895 IX88_RS09065 IX88_RS09095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX88_RS09145 SM00481 DNA polymerase alpha chain like domain IX88_RS09150 SM00870 IX88_RS09150 IX88_RS09175 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS09190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX88_RS09225 SM00100 Cyclic nucleotide-monophosphate binding domain IX88_RS09225 SM00419 helix_turn_helix, cAMP Regulatory protein IX88_RS09245 SM00382 ATPases associated with a variety of cellular activities IX88_RS09245 SM00930 IX88_RS09245 IX88_RS09280 SM00062 Bacterial periplasmic substrate-binding proteins IX88_RS09295 SM00382 ATPases associated with a variety of cellular activities IX88_RS09305 SM00344 helix_turn_helix ASNC type IX88_RS09315 SM00563 Phosphate acyltransferases IX88_RS09340 SM01236 IX88_RS09340 IX88_RS09420 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS09420 SM00876 Biotin and Thiamin Synthesis associated domain IX88_RS09440 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS09475 SM00861 Transketolase, pyrimidine binding domain IX88_RS09485 SM00867 YceI-like domain IX88_RS09520 SM00344 helix_turn_helix ASNC type IX88_RS09540 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS09550 SM00382 ATPases associated with a variety of cellular activities IX88_RS09570 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor IX88_RS09580 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. IX88_RS09640 SM00470 ParB-like nuclease domain IX88_RS09655 SM00382 ATPases associated with a variety of cellular activities IX88_RS09715 SM00986 Uracil DNA glycosylase superfamily IX88_RS09715 SM00987 UreE urease accessory protein, C-terminal domain IX88_RS09740 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS09745 SM00411 bacterial (prokaryotic) histone like domain IX88_RS09755 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family IX88_RS09770 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS09835 SM00382 ATPases associated with a variety of cellular activities IX88_RS09890 SM00487 DEAD-like helicases superfamily IX88_RS09890 SM00490 helicase superfamily c-terminal domain IX88_RS09890 SM00982 IX88_RS09890 IX88_RS09890 SM01058 CarD-like/TRCF domain IX88_RS09900 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain IX88_RS09915 SM00271 DnaJ molecular chaperone homology domain IX88_RS09950 SM00411 bacterial (prokaryotic) histone like domain IX88_RS09960 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS10050 SM01006 Siderophore biosynthesis protein domain IX88_RS10075 SM00855 Phosphoglycerate mutase family IX88_RS10135 SM00382 ATPases associated with a variety of cellular activities IX88_RS10175 SM01324 IX88_RS10175 IX88_RS10225 SM00493 IX88_RS10225 IX88_RS10230 SM00341 Helicase and RNase D C-terminal IX88_RS10230 SM00474 3'-5' exonuclease IX88_RS10260 SM00382 ATPases associated with a variety of cellular activities IX88_RS10285 SM00267 diguanylate cyclase IX88_RS10300 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS10310 SM00861 Transketolase, pyrimidine binding domain IX88_RS10330 SM00829 Enoylreductase IX88_RS10340 SM00382 ATPases associated with a variety of cellular activities IX88_RS10345 SM00849 Metallo-beta-lactamase superfamily IX88_RS10370 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS10390 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS10390 SM00866 IX88_RS10390 IX88_RS10460 SM00882 Coenzyme A transferase IX88_RS10465 SM00882 Coenzyme A transferase IX88_RS10510 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS10535 SM00903 Flavin reductase like domain IX88_RS10545 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS10580 SM00382 ATPases associated with a variety of cellular activities IX88_RS10625 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS10650 SM00155 Phospholipase D. Active site motifs. IX88_RS10675 SM00829 Enoylreductase IX88_RS10780 SM00448 cheY-homologous receiver domain IX88_RS10780 SM00862 Transcriptional regulatory protein, C terminal IX88_RS10795 SM00387 Histidine kinase-like ATPases IX88_RS10795 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS10805 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS10815 SM00822 IX88_RS10815 IX88_RS10820 SM00822 IX88_RS10820 IX88_RS10850 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS10920 SM01400 IX88_RS10920 IX88_RS10930 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS10940 SM00382 ATPases associated with a variety of cellular activities IX88_RS10955 SM00829 Enoylreductase IX88_RS10970 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS11060 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS11060 SM00866 IX88_RS11060 IX88_RS11090 SM00912 haemagglutination activity domain IX88_RS11165 SM00422 helix_turn_helix, mercury resistance IX88_RS11215 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS11215 SM00895 IX88_RS11215 IX88_RS11230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IX88_RS11245 SM00882 Coenzyme A transferase IX88_RS11250 SM00882 Coenzyme A transferase IX88_RS11285 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS11290 SM00903 Flavin reductase like domain IX88_RS11335 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_RS11355 SM00855 Phosphoglycerate mutase family IX88_RS11375 SM00346 helix_turn_helix isocitrate lyase regulation IX88_RS11380 SM00849 Metallo-beta-lactamase superfamily IX88_RS11400 SM00564 beta-propeller repeat IX88_RS11410 SM00710 Parallel beta-helix repeats IX88_RS11445 SM00998 Adenylosuccinate lyase C-terminus IX88_RS11455 SM00882 Coenzyme A transferase IX88_RS11460 SM00882 Coenzyme A transferase IX88_RS11480 SM01192 IX88_RS11480 IX88_RS11480 SM01193 IX88_RS11480 IX88_RS11545 SM00382 ATPases associated with a variety of cellular activities IX88_RS11545 SM01086 C-terminal, D2-small domain, of ClpB protein IX88_RS11560 SM00859 Semialdehyde dehydrogenase, NAD binding domain IX88_RS11600 SM01264 IX88_RS11600 IX88_RS11665 SM00382 ATPases associated with a variety of cellular activities IX88_RS11665 SM00962 SRP54-type protein, GTPase domain IX88_RS11665 SM00963 SRP54-type protein, helical bundle domain IX88_RS11690 SM00116 Domain in cystathionine beta-synthase and other proteins. IX88_RS11760 SM00347 helix_turn_helix multiple antibiotic resistance protein IX88_RS11770 SM00052 Putative diguanylate phosphodiesterase IX88_RS11770 SM00091 PAS domain IX88_RS11770 SM00267 diguanylate cyclase IX88_RS11815 SM00344 helix_turn_helix ASNC type IX88_RS11845 SM00363 S4 RNA-binding domain IX88_RS11850 SM00382 ATPases associated with a variety of cellular activities IX88_RS11885 SM00935 Outer membrane protein (OmpH-like) IX88_RS11895 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_RS11925 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS11930 SM00091 PAS domain IX88_RS11930 SM00387 Histidine kinase-like ATPases IX88_RS11930 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS11935 SM00382 ATPases associated with a variety of cellular activities IX88_RS11935 SM00448 cheY-homologous receiver domain IX88_RS12020 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS12030 SM00852 Probable molybdopterin binding domain IX88_RS12035 SM00852 Probable molybdopterin binding domain IX88_RS12050 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS12055 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX88_RS12065 SM00926 Molybdopterin oxidoreductase Fe4S4 domain IX88_RS12085 SM00448 cheY-homologous receiver domain IX88_RS12085 SM01012 IX88_RS12085 IX88_RS12110 SM00878 Biotin carboxylase C-terminal domain IX88_RS12195 SM00232 JAB/MPN domain IX88_RS12405 SM00507 HNH nucleases IX88_RS12420 SM00382 ATPases associated with a variety of cellular activities IX88_RS12455 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS12520 SM01236 IX88_RS12520 IX88_RS12555 SM00226 Low molecular weight phosphatase family IX88_RS12580 SM00382 ATPases associated with a variety of cellular activities IX88_RS12615 SM00822 IX88_RS12615 IX88_RS12645 SM00344 helix_turn_helix ASNC type IX88_RS12660 SM00831 Cation transporter/ATPase, N-terminus IX88_RS12685 SM00382 ATPases associated with a variety of cellular activities IX88_RS12765 SM00344 helix_turn_helix ASNC type IX88_RS12770 SM00830 Chorismate mutase type II IX88_RS12790 SM00972 Spore Coat Protein U domain IX88_RS12805 SM00972 Spore Coat Protein U domain IX88_RS12830 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS12830 SM00871 Bacterial transcription activator, effector binding domain IX88_RS12840 SM00382 ATPases associated with a variety of cellular activities IX88_RS12855 SM00862 Transcriptional regulatory protein, C terminal IX88_RS12925 SM00853 MutL C terminal dimerisation domain IX88_RS12925 SM01340 IX88_RS12925 IX88_RS12950 SM00363 S4 RNA-binding domain IX88_RS13030 SM01230 IX88_RS13030 IX88_RS13035 SM00448 cheY-homologous receiver domain IX88_RS13035 SM00862 Transcriptional regulatory protein, C terminal IX88_RS13040 SM00387 Histidine kinase-like ATPases IX88_RS13040 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS13065 SM00905 Dihydroneopterin aldolase IX88_RS13080 SM00903 Flavin reductase like domain IX88_RS13095 SM00822 IX88_RS13095 IX88_RS13100 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS13105 SM00062 Bacterial periplasmic substrate-binding proteins IX88_RS13120 SM00937 IX88_RS13120 IX88_RS13235 SM01005 Alanine racemase, C-terminal domain IX88_RS13245 SM00460 Transglutaminase/protease-like homologues IX88_RS13265 SM01228 IX88_RS13265 IX88_RS13290 SM00798 AICARFT/IMPCHase bienzyme IX88_RS13290 SM00851 MGS-like domain IX88_RS13295 SM01209 IX88_RS13295 IX88_RS13295 SM01210 IX88_RS13295 IX88_RS13305 SM00382 ATPases associated with a variety of cellular activities IX88_RS13305 SM00930 IX88_RS13305 IX88_RS13315 SM00849 Metallo-beta-lactamase superfamily IX88_RS13375 SM00448 cheY-homologous receiver domain IX88_RS13375 SM00862 Transcriptional regulatory protein, C terminal IX88_RS13380 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS13420 SM00387 Histidine kinase-like ATPases IX88_RS13420 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS13425 SM00448 cheY-homologous receiver domain IX88_RS13425 SM00862 Transcriptional regulatory protein, C terminal IX88_RS13435 SM00095 Transthyretin IX88_RS13490 SM00972 Spore Coat Protein U domain IX88_RS13515 SM00972 Spore Coat Protein U domain IX88_RS13530 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS13530 SM00895 IX88_RS13530 IX88_RS13550 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS13565 SM01034 Sensors of blue-light using FAD IX88_RS13645 SM00912 haemagglutination activity domain IX88_RS13675 SM00220 Serine/Threonine protein kinases, catalytic domain IX88_RS13785 SM01252 IX88_RS13785 IX88_RS13795 SM00028 Tetratricopeptide repeats IX88_RS13925 SM00507 HNH nucleases IX88_RS13950 SM00382 ATPases associated with a variety of cellular activities IX88_RS13970 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS14025 SM00465 GIY-YIG type nucleases (URI domain) IX88_RS14040 SM00855 Phosphoglycerate mutase family IX88_RS14060 SM00487 DEAD-like helicases superfamily IX88_RS14060 SM00490 helicase superfamily c-terminal domain IX88_RS14065 SM00357 Cold shock protein domain IX88_RS14130 SM00830 Chorismate mutase type II IX88_RS14185 SM00387 Histidine kinase-like ATPases IX88_RS14185 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS14190 SM00448 cheY-homologous receiver domain IX88_RS14190 SM00862 Transcriptional regulatory protein, C terminal IX88_RS14200 SM00382 ATPases associated with a variety of cellular activities IX88_RS14225 SM00345 helix_turn_helix gluconate operon transcriptional repressor IX88_RS14275 SM00479 IX88_RS14275 IX88_RS14290 SM00382 ATPases associated with a variety of cellular activities IX88_RS14340 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS14390 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS14410 SM00996 S-adenosyl-L-homocysteine hydrolase IX88_RS14410 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IX88_RS14425 SM00052 Putative diguanylate phosphodiesterase IX88_RS14425 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) IX88_RS14425 SM00091 PAS domain IX88_RS14425 SM00267 diguanylate cyclase IX88_RS14430 SM00919 Malic enzyme, NAD binding domain IX88_RS14430 SM01274 IX88_RS14430 IX88_RS14440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_RS14495 SM01230 IX88_RS14495 IX88_RS14540 SM00060 Fibronectin type 3 domain IX88_RS14710 SM00507 HNH nucleases IX88_RS14720 SM00382 ATPases associated with a variety of cellular activities IX88_RS14755 SM00530 Helix-turn-helix XRE-family like proteins IX88_RS14850 SM00463 Small MutS-related domain IX88_RS14860 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IX88_RS14865 SM01092 CO dehydrogenase flavoprotein C-terminal domain IX88_RS14920 SM00382 ATPases associated with a variety of cellular activities IX88_RS14925 SM00382 ATPases associated with a variety of cellular activities IX88_RS14970 SM00382 ATPases associated with a variety of cellular activities IX88_RS15045 SM00841 Elongation factor P, C-terminal IX88_RS15045 SM01185 IX88_RS15045 IX88_RS15060 SM00052 Putative diguanylate phosphodiesterase IX88_RS15095 SM00257 Lysin motif IX88_RS15115 SM00936 Penicillin-binding protein 5, C-terminal domain IX88_RS15160 SM00382 ATPases associated with a variety of cellular activities IX88_RS15190 SM00344 helix_turn_helix ASNC type IX88_RS15245 SM00487 DEAD-like helicases superfamily IX88_RS15245 SM00490 helicase superfamily c-terminal domain IX88_RS15275 SM00880 IX88_RS15275 IX88_RS15275 SM01118 IX88_RS15275 IX88_RS15325 SM01329 IX88_RS15325 IX88_RS15425 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase IX88_RS15445 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IX88_RS15460 SM00487 DEAD-like helicases superfamily IX88_RS15460 SM00490 helicase superfamily c-terminal domain IX88_RS15470 SM00267 diguanylate cyclase IX88_RS15535 SM00358 Double-stranded RNA binding motif IX88_RS15535 SM00535 Ribonuclease III family IX88_RS15550 SM00838 Elongation factor G C-terminus IX88_RS15560 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. IX88_RS15610 SM00382 ATPases associated with a variety of cellular activities IX88_RS15685 SM01211 IX88_RS15685 IX88_RS15690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. IX88_RS15695 SM00278 Helix-hairpin-helix DNA-binding motif class 1 IX88_RS15700 SM00382 ATPases associated with a variety of cellular activities IX88_RS15815 SM00849 Metallo-beta-lactamase superfamily IX88_RS15820 SM00382 ATPases associated with a variety of cellular activities IX88_RS15890 SM00434 DNA Topoisomerase IV IX88_RS15895 SM00893 Electron transfer flavoprotein domain IX88_RS15900 SM00893 Electron transfer flavoprotein domain IX88_RS15935 SM00382 ATPases associated with a variety of cellular activities IX88_RS15940 SM00978 IX88_RS15940 IX88_RS16025 SM00422 helix_turn_helix, mercury resistance IX88_RS16190 SM00849 Metallo-beta-lactamase superfamily IX88_RS16205 SM00883 Chaperonin 10 Kd subunit IX88_RS16215 SM00046 Diacylglycerol kinase catalytic domain (presumed) IX88_RS16290 SM00382 ATPases associated with a variety of cellular activities IX88_RS16300 SM01103 IX88_RS16300 IX88_RS16315 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain IX88_RS16320 SM00851 MGS-like domain IX88_RS16320 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IX88_RS16350 SM00854 Bacterial capsule synthesis protein PGA_cap IX88_RS16385 SM00881 CoA binding domain IX88_RS16405 SM00861 Transketolase, pyrimidine binding domain IX88_RS16440 SM00450 Rhodanese Homology Domain IX88_RS16545 SM00014 Acid phosphatase homologues IX88_RS16580 SM00822 IX88_RS16580 IX88_RS16625 SM00387 Histidine kinase-like ATPases IX88_RS16625 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS16630 SM00448 cheY-homologous receiver domain IX88_RS16630 SM00862 Transcriptional regulatory protein, C terminal IX88_RS16650 SM00563 Phosphate acyltransferases IX88_RS16665 SM00244 prohibitin homologues IX88_RS16700 SM00829 Enoylreductase IX88_RS16705 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS16725 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS16760 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS16795 SM00845 GatB domain IX88_RS16935 SM00073 Histidine Phosphotransfer domain IX88_RS16935 SM00260 Two component signalling adaptor domain IX88_RS16935 SM00387 Histidine kinase-like ATPases IX88_RS16935 SM00448 cheY-homologous receiver domain IX88_RS16935 SM01231 IX88_RS16935 IX88_RS16940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). IX88_RS16945 SM00260 Two component signalling adaptor domain IX88_RS16950 SM00448 cheY-homologous receiver domain IX88_RS16955 SM00448 cheY-homologous receiver domain IX88_RS17010 SM00671 Sel1-like repeats. IX88_RS17035 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain IX88_RS17035 SM01232 IX88_RS17035 IX88_RS17055 SM00838 Elongation factor G C-terminus IX88_RS17120 SM00564 beta-propeller repeat IX88_RS17135 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS17185 SM00957 SecA DEAD-like domain IX88_RS17185 SM00958 SecA preprotein cross-linking domain IX88_RS17195 SM00849 Metallo-beta-lactamase superfamily IX88_RS17225 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS17285 SM00448 cheY-homologous receiver domain IX88_RS17285 SM00862 Transcriptional regulatory protein, C terminal IX88_RS17290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain IX88_RS17290 SM00387 Histidine kinase-like ATPases IX88_RS17290 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS17405 SM00387 Histidine kinase-like ATPases IX88_RS17405 SM00388 His Kinase A (phosphoacceptor) domain IX88_RS17445 SM01323 IX88_RS17445 IX88_RS17475 SM00481 DNA polymerase alpha chain like domain IX88_RS17500 SM00450 Rhodanese Homology Domain IX88_RS17575 SM00267 diguanylate cyclase IX88_RS17590 SM00155 Phospholipase D. Active site motifs. IX88_RS17595 SM00563 Phosphate acyltransferases IX88_RS17625 SM00650 Ribosomal RNA adenine dimethylases IX88_RS17660 SM00878 Biotin carboxylase C-terminal domain IX88_RS17750 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. IX88_RS17780 SM00729 Elongator protein 3, MiaB family, Radical SAM IX88_RS17830 SM00342 helix_turn_helix, arabinose operon control protein IX88_RS17880 SM00316 Ribosomal protein S1-like RNA-binding domain IX88_RS17880 SM00955 IX88_RS17880 IX88_RS17940 SM00662 RNA polymerases D IX88_RS17945 SM00363 S4 RNA-binding domain IX88_RS17945 SM01390 IX88_RS17945