locus-tag class description EP560_RS00005 PF11638 DnaA N-terminal domain EP560_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix EP560_RS00005 PF00308 Bacterial dnaA protein EP560_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EP560_RS00010 PF02767 DNA polymerase III beta subunit, central domain EP560_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EP560_RS00015 PF02463 RecF/RecN/SMC N terminal domain EP560_RS00020 PF00204 DNA gyrase B EP560_RS00020 PF18053 DNA gyrase B subunit insert domain EP560_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS00020 PF01751 Toprim domain EP560_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus EP560_RS00030 PF09335 SNARE associated Golgi protein EP560_RS00035 PF12848 ABC transporter EP560_RS00035 PF00005 ABC transporter EP560_RS00055 PF01521 Iron-sulphur cluster biosynthesis EP560_RS00060 PF00561 alpha/beta hydrolase fold EP560_RS00065 PF03702 Anhydro-N-acetylmuramic acid kinase EP560_RS00070 PF00579 tRNA synthetases class I (W and Y) EP560_RS00110 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS00120 PF03358 NADPH-dependent FMN reductase EP560_RS00140 PF08497 Radical SAM N-terminal EP560_RS00140 PF04055 Radical SAM superfamily EP560_RS00140 PF11842 Domain of unknown function (DUF3362) EP560_RS00155 PF11799 impB/mucB/samB family C-terminal domain EP560_RS00155 PF11798 IMS family HHH motif EP560_RS00155 PF00817 impB/mucB/samB family EP560_RS00165 PF07690 Major Facilitator Superfamily EP560_RS00170 PF03641 Possible lysine decarboxylase EP560_RS00175 PF03471 Transporter associated domain EP560_RS00175 PF03741 Integral membrane protein TerC family EP560_RS00180 PF02810 SEC-C motif EP560_RS00185 PF03458 UPF0126 domain EP560_RS00190 PF07690 Major Facilitator Superfamily EP560_RS00195 PF03989 DNA gyrase C-terminal domain, beta-propeller EP560_RS00195 PF00521 DNA gyrase/topoisomerase IV, subunit A EP560_RS00200 PF00501 AMP-binding enzyme EP560_RS00200 PF13193 AMP-binding enzyme C-terminal domain EP560_RS00215 PF00719 Inorganic pyrophosphatase EP560_RS00220 PF03573 outer membrane porin, OprD family EP560_RS00235 PF00701 Dihydrodipicolinate synthetase family EP560_RS00245 PF00392 Bacterial regulatory proteins, gntR family EP560_RS00245 PF00155 Aminotransferase class I and II EP560_RS00250 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP560_RS00250 PF01078 Magnesium chelatase, subunit ChlI EP560_RS00260 PF00665 Integrase core domain EP560_RS00290 PF00582 Universal stress protein family EP560_RS00295 PF00916 Sulfate permease family EP560_RS00295 PF01740 STAS domain EP560_RS00305 PF07690 Major Facilitator Superfamily EP560_RS00310 PF00440 Bacterial regulatory proteins, tetR family EP560_RS00310 PF02909 Tetracyclin repressor-like, C-terminal domain EP560_RS00335 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EP560_RS00340 PF01636 Phosphotransferase enzyme family EP560_RS00350 PF13335 Magnesium chelatase, subunit ChlI C-terminal EP560_RS00350 PF01078 Magnesium chelatase, subunit ChlI EP560_RS00360 PF00543 Nitrogen regulatory protein P-II EP560_RS00365 PF00909 Ammonium Transporter Family EP560_RS00370 PF03477 ATP cone domain EP560_RS00375 PF01872 RibD C-terminal domain EP560_RS00375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP560_RS00385 PF00677 Lumazine binding domain EP560_RS00405 PF00883 Cytosol aminopeptidase family, catalytic domain EP560_RS00405 PF02789 Cytosol aminopeptidase family, N-terminal domain EP560_RS00415 PF03739 Lipopolysaccharide export system permease LptF/LptG EP560_RS00420 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EP560_RS00420 PF01676 Metalloenzyme superfamily EP560_RS00425 PF03572 Peptidase family S41 EP560_RS00425 PF00595 PDZ domain EP560_RS00430 PF00072 Response regulator receiver domain EP560_RS00430 PF02954 Bacterial regulatory protein, Fis family EP560_RS00430 PF00158 Sigma-54 interaction domain EP560_RS00435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS00435 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS00440 PF00196 Bacterial regulatory proteins, luxR family EP560_RS00440 PF00072 Response regulator receiver domain EP560_RS00445 PF00768 D-alanyl-D-alanine carboxypeptidase EP560_RS00450 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS00455 PF00742 Homoserine dehydrogenase EP560_RS00455 PF01842 ACT domain EP560_RS00455 PF03447 Homoserine dehydrogenase, NAD binding domain EP560_RS00460 PF10411 Disulfide bond isomerase protein N-terminus EP560_RS00460 PF13098 Thioredoxin-like domain EP560_RS00465 PF00589 Phage integrase family EP560_RS00465 PF02899 Phage integrase, N-terminal SAM-like domain EP560_RS00475 PF07670 Nucleoside recognition EP560_RS00475 PF07664 Ferrous iron transport protein B C terminus EP560_RS00475 PF02421 Ferrous iron transport protein B EP560_RS00485 PF08245 Mur ligase middle domain EP560_RS00485 PF02875 Mur ligase family, glutamate ligase domain EP560_RS00490 PF01098 Cell cycle protein EP560_RS00495 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP560_RS00500 PF01258 Prokaryotic dksA/traR C4-type zinc finger EP560_RS00505 PF00149 Calcineurin-like phosphoesterase EP560_RS00510 PF00293 NUDIX domain EP560_RS00515 PF01964 Radical SAM ThiC family EP560_RS00515 PF13667 ThiC-associated domain EP560_RS00530 PF00892 EamA-like transporter family EP560_RS00535 PF02321 Outer membrane efflux protein EP560_RS00540 PF01895 PhoU domain EP560_RS00545 PF04362 Bacterial Fe(2+) trafficking EP560_RS00550 PF00206 Lyase EP560_RS00550 PF14698 Argininosuccinate lyase C-terminal EP560_RS00555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS00555 PF06580 Histidine kinase EP560_RS00555 PF07694 5TMR of 5TMR-LYT EP560_RS00560 PF04397 LytTr DNA-binding domain EP560_RS00560 PF00072 Response regulator receiver domain EP560_RS00565 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EP560_RS00565 PF03900 Porphobilinogen deaminase, C-terminal domain EP560_RS00590 PF00816 H-NS histone family EP560_RS00605 PF03958 Bacterial type II/III secretion system short domain EP560_RS00605 PF00263 Bacterial type II and III secretion system protein EP560_RS00610 PF12401 Protein of unknown function (DUF2662) EP560_RS00610 PF00498 FHA domain EP560_RS00615 PF13419 Haloacid dehalogenase-like hydrolase EP560_RS00620 PF04715 Anthranilate synthase component I, N terminal region EP560_RS00620 PF00425 chorismate binding enzyme EP560_RS00645 PF00009 Elongation factor Tu GTP binding domain EP560_RS00645 PF03144 Elongation factor Tu domain 2 EP560_RS00645 PF03143 Elongation factor Tu C-terminal domain EP560_RS00655 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EP560_RS00660 PF02357 Transcription termination factor nusG EP560_RS00660 PF00467 KOW motif EP560_RS00665 PF00298 Ribosomal protein L11, RNA binding domain EP560_RS00665 PF03946 Ribosomal protein L11, N-terminal domain EP560_RS00670 PF00687 Ribosomal protein L1p/L10e family EP560_RS00675 PF00466 Ribosomal protein L10 EP560_RS00680 PF16320 Ribosomal protein L7/L12 dimerisation domain EP560_RS00680 PF00542 Ribosomal protein L7/L12 C-terminal domain EP560_RS00685 PF04560 RNA polymerase Rpb2, domain 7 EP560_RS00685 PF10385 RNA polymerase beta subunit external 1 domain EP560_RS00685 PF04565 RNA polymerase Rpb2, domain 3 EP560_RS00685 PF04563 RNA polymerase beta subunit EP560_RS00685 PF00562 RNA polymerase Rpb2, domain 6 EP560_RS00685 PF04561 RNA polymerase Rpb2, domain 2 EP560_RS00690 PF04997 RNA polymerase Rpb1, domain 1 EP560_RS00690 PF00623 RNA polymerase Rpb1, domain 2 EP560_RS00690 PF04983 RNA polymerase Rpb1, domain 3 EP560_RS00690 PF05000 RNA polymerase Rpb1, domain 4 EP560_RS00690 PF04998 RNA polymerase Rpb1, domain 5 EP560_RS00715 PF00561 alpha/beta hydrolase fold EP560_RS00720 PF13726 Na+-H+ antiporter family EP560_RS00720 PF03553 Na+/H+ antiporter family EP560_RS00735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS00735 PF00183 Hsp90 protein EP560_RS00750 PF01323 DSBA-like thioredoxin domain EP560_RS00760 PF09278 MerR, DNA binding EP560_RS00760 PF00376 MerR family regulatory protein EP560_RS00780 PF02803 Thiolase, C-terminal domain EP560_RS00780 PF00108 Thiolase, N-terminal domain EP560_RS00785 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS00785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_RS00785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_RS00810 PF08459 UvrC Helix-hairpin-helix N-terminal EP560_RS00810 PF02151 UvrB/uvrC motif EP560_RS00810 PF01541 GIY-YIG catalytic domain EP560_RS00820 PF01066 CDP-alcohol phosphatidyltransferase EP560_RS00825 PF02805 Metal binding domain of Ada EP560_RS00825 PF12833 Helix-turn-helix domain EP560_RS00825 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP560_RS00825 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP560_RS00850 PF13533 Biotin-lipoyl like EP560_RS00855 PF03652 Holliday junction resolvase EP560_RS00860 PF02622 Uncharacterized ACR, COG1678 EP560_RS00865 PF02463 RecF/RecN/SMC N terminal domain EP560_RS00875 PF06865 Pyrimidine/purine nucleoside phosphorylase EP560_RS00880 PF00588 SpoU rRNA Methylase family EP560_RS00880 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP560_RS00890 PF01121 Dephospho-CoA kinase EP560_RS00895 PF01478 Type IV leader peptidase family EP560_RS00895 PF06750 Bacterial Peptidase A24 N-terminal domain EP560_RS00900 PF00482 Type II secretion system (T2SS), protein F EP560_RS00905 PF00437 Type II/IV secretion system protein EP560_RS00905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EP560_RS00910 PF00121 Triosephosphate isomerase EP560_RS00915 PF03840 Preprotein translocase SecG subunit EP560_RS00935 PF17384 RimP C-terminal SH3 domain EP560_RS00935 PF02576 RimP N-terminal domain EP560_RS00940 PF08529 NusA N-terminal domain EP560_RS00940 PF13184 NusA-like KH domain EP560_RS00940 PF00575 S1 RNA binding domain EP560_RS00945 PF11987 Translation-initiation factor 2 EP560_RS00945 PF00009 Elongation factor Tu GTP binding domain EP560_RS00945 PF08364 Bacterial translation initiation factor IF-2 associated region EP560_RS00945 PF04760 Translation initiation factor IF-2, N-terminal region EP560_RS00950 PF02033 Ribosome-binding factor A EP560_RS00955 PF03334 Na+/H+ antiporter subunit EP560_RS00960 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EP560_RS00965 PF01899 Na+/H+ ion antiporter subunit EP560_RS00970 PF00361 Proton-conducting membrane transporter EP560_RS00975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP560_RS00980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP560_RS00980 PF00361 Proton-conducting membrane transporter EP560_RS00980 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EP560_RS00980 PF13244 Domain of unknown function (DUF4040) EP560_RS00995 PF01502 Phosphoribosyl-AMP cyclohydrolase EP560_RS01000 PF01494 FAD binding domain EP560_RS01005 PF03109 ABC1 family EP560_RS01015 PF01209 ubiE/COQ5 methyltransferase family EP560_RS01025 PF03976 Polyphosphate kinase 2 (PPK2) EP560_RS01035 PF17946 RecC C-terminal domain EP560_RS01040 PF00580 UvrD/REP helicase N-terminal domain EP560_RS01040 PF13361 UvrD-like helicase C-terminal domain EP560_RS01040 PF12705 PD-(D/E)XK nuclease superfamily EP560_RS01045 PF13538 UvrD-like helicase C-terminal domain EP560_RS01050 PF00144 Beta-lactamase EP560_RS01055 PF00312 Ribosomal protein S15 EP560_RS01060 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EP560_RS01060 PF00013 KH domain EP560_RS01060 PF00575 S1 RNA binding domain EP560_RS01060 PF03725 3' exoribonuclease family, domain 2 EP560_RS01060 PF01138 3' exoribonuclease family, domain 1 EP560_RS01065 PF01544 CorA-like Mg2+ transporter protein EP560_RS01075 PF01556 DnaJ C terminal domain EP560_RS01075 PF00226 DnaJ domain EP560_RS01085 PF01430 Hsp33 protein EP560_RS01090 PF00999 Sodium/hydrogen exchanger family EP560_RS01090 PF02254 TrkA-N domain EP560_RS01095 PF00270 DEAD/DEAH box helicase EP560_RS01095 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EP560_RS01095 PF18074 Primosomal protein N C-terminal domain EP560_RS01095 PF00271 Helicase conserved C-terminal domain EP560_RS01095 PF17764 3′ DNA-binding domain (3′BD) EP560_RS01100 PF00482 Type II secretion system (T2SS), protein F EP560_RS01105 PF07963 Prokaryotic N-terminal methylation motif EP560_RS01105 PF08334 Type II secretion system (T2SS), protein G EP560_RS01115 PF01588 Putative tRNA binding domain EP560_RS01120 PF00795 Carbon-nitrogen hydrolase EP560_RS01125 PF00571 CBS domain EP560_RS01125 PF03471 Transporter associated domain EP560_RS01130 PF01206 Sulfurtransferase TusA EP560_RS01145 PF01177 Asp/Glu/Hydantoin racemase EP560_RS01155 PF00762 Ferrochelatase EP560_RS01160 PF00753 Metallo-beta-lactamase superfamily EP560_RS01165 PF03884 DNA gyrase inhibitor YacG EP560_RS01185 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EP560_RS01200 PF01197 Ribosomal protein L31 EP560_RS01205 PF03109 ABC1 family EP560_RS01210 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS01210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS01215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS01215 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS01215 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS01220 PF01554 MatE EP560_RS01230 PF06969 HemN C-terminal domain EP560_RS01230 PF04055 Radical SAM superfamily EP560_RS01235 PF00106 short chain dehydrogenase EP560_RS01240 PF03466 LysR substrate binding domain EP560_RS01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS01250 PF00501 AMP-binding enzyme EP560_RS01250 PF13193 AMP-binding enzyme C-terminal domain EP560_RS01255 PF00575 S1 RNA binding domain EP560_RS01255 PF12111 Polyribonucleotide phosphorylase C terminal EP560_RS01255 PF10150 Ribonuclease E/G family EP560_RS01265 PF01479 S4 domain EP560_RS01265 PF00849 RNA pseudouridylate synthase EP560_RS01270 PF13419 Haloacid dehalogenase-like hydrolase EP560_RS01275 PF13280 WYL domain EP560_RS01275 PF08279 HTH domain EP560_RS01280 PF02798 Glutathione S-transferase, N-terminal domain EP560_RS01290 PF13737 Transposase DDE domain EP560_RS01295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS01295 PF03466 LysR substrate binding domain EP560_RS01300 PF12706 Beta-lactamase superfamily domain EP560_RS01305 PF00141 Peroxidase EP560_RS01310 PF00391 PEP-utilising enzyme, mobile domain EP560_RS01310 PF02896 PEP-utilising enzyme, TIM barrel domain EP560_RS01310 PF01590 GAF domain EP560_RS01310 PF05524 PEP-utilising enzyme, N-terminal EP560_RS01315 PF00293 NUDIX domain EP560_RS01335 PF03466 LysR substrate binding domain EP560_RS01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS01345 PF00330 Aconitase family (aconitate hydratase) EP560_RS01350 PF00694 Aconitase C-terminal domain EP560_RS01360 PF00180 Isocitrate/isopropylmalate dehydrogenase EP560_RS01375 PF01176 Translation initiation factor 1A / IF-1 EP560_RS01385 PF01416 tRNA pseudouridine synthase EP560_RS01405 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP560_RS01405 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP560_RS01415 PF00375 Sodium:dicarboxylate symporter family EP560_RS01425 PF03279 Bacterial lipid A biosynthesis acyltransferase EP560_RS01430 PF01810 LysE type translocator EP560_RS01435 PF00005 ABC transporter EP560_RS01435 PF16326 ABC transporter C-terminal domain EP560_RS01435 PF12848 ABC transporter EP560_RS01440 PF04102 SlyX EP560_RS01445 PF00107 Zinc-binding dehydrogenase EP560_RS01445 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS01450 PF01638 HxlR-like helix-turn-helix EP560_RS01460 PF01396 Topoisomerase DNA binding C4 zinc finger EP560_RS01460 PF08272 Topoisomerase I zinc-ribbon-like EP560_RS01460 PF01131 DNA topoisomerase EP560_RS01460 PF01751 Toprim domain EP560_RS01475 PF13361 UvrD-like helicase C-terminal domain EP560_RS01475 PF00580 UvrD/REP helicase N-terminal domain EP560_RS01480 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) EP560_RS01500 PF02254 TrkA-N domain EP560_RS01500 PF00999 Sodium/hydrogen exchanger family EP560_RS01505 PF00471 Ribosomal protein L33 EP560_RS01510 PF00830 Ribosomal L28 family EP560_RS01515 PF00171 Aldehyde dehydrogenase family EP560_RS01525 PF01842 ACT domain EP560_RS01525 PF00551 Formyl transferase EP560_RS01535 PF01618 MotA/TolQ/ExbB proton channel family EP560_RS01545 PF01625 Peptide methionine sulfoxide reductase EP560_RS01555 PF00186 Dihydrofolate reductase EP560_RS01560 PF00303 Thymidylate synthase EP560_RS01575 PF01790 Prolipoprotein diacylglyceryl transferase EP560_RS01595 PF00902 Sec-independent protein translocase protein (TatC) EP560_RS01600 PF02416 mttA/Hcf106 family EP560_RS01605 PF02416 mttA/Hcf106 family EP560_RS01615 PF01725 Ham1 family EP560_RS01625 PF00561 alpha/beta hydrolase fold EP560_RS01625 PF07021 Methionine biosynthesis protein MetW EP560_RS01630 PF00561 alpha/beta hydrolase fold EP560_RS01635 PF08502 LeuA allosteric (dimerisation) domain EP560_RS01635 PF00682 HMGL-like EP560_RS01640 PF13640 2OG-Fe(II) oxygenase superfamily EP560_RS01640 PF18331 PKHD-type hydroxylase C-terminal domain EP560_RS01645 PF00593 TonB dependent receptor EP560_RS01645 PF07715 TonB-dependent Receptor Plug Domain EP560_RS01650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_RS01650 PF05697 Bacterial trigger factor protein (TF) EP560_RS01650 PF05698 Bacterial trigger factor protein (TF) C-terminus EP560_RS01655 PF00574 Clp protease EP560_RS01660 PF06689 ClpX C4-type zinc finger EP560_RS01660 PF07724 AAA domain (Cdc48 subfamily) EP560_RS01660 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_RS01675 PF05683 Fumarase C-terminus EP560_RS01675 PF05681 Fumarate hydratase (Fumerase) EP560_RS01680 PF01515 Phosphate acetyl/butaryl transferase EP560_RS01680 PF07085 DRTGG domain EP560_RS01685 PF00871 Acetokinase family EP560_RS01690 PF00920 Dehydratase family EP560_RS01695 PF01081 KDPG and KHG aldolase EP560_RS01700 PF02447 GntP family permease EP560_RS01705 PF01202 Shikimate kinase EP560_RS01710 PF00171 Aldehyde dehydrogenase family EP560_RS01715 PF00171 Aldehyde dehydrogenase family EP560_RS01720 PF00561 alpha/beta hydrolase fold EP560_RS01730 PF00933 Glycosyl hydrolase family 3 N terminal domain EP560_RS01735 PF17804 Tail specific protease N-terminal domain EP560_RS01735 PF03572 Peptidase family S41 EP560_RS01735 PF11818 C-terminal domain of tail specific protease (DUF3340) EP560_RS01735 PF00595 PDZ domain EP560_RS01740 PF00534 Glycosyl transferases group 1 EP560_RS01740 PF13439 Glycosyltransferase Family 4 EP560_RS01745 PF01569 PAP2 superfamily EP560_RS01750 PF04384 Iron-sulphur cluster assembly EP560_RS01755 PF00334 Nucleoside diphosphate kinase EP560_RS01760 PF04055 Radical SAM superfamily EP560_RS01770 PF13464 Domain of unknown function (DUF4115) EP560_RS01775 PF04551 GcpE protein EP560_RS01780 PF03129 Anticodon binding domain EP560_RS01780 PF13393 Histidyl-tRNA synthetase EP560_RS01790 PF13360 PQQ-like domain EP560_RS01795 PF01926 50S ribosome-binding GTPase EP560_RS01795 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EP560_RS01810 PF00550 Phosphopantetheine attachment site EP560_RS01815 PF00550 Phosphopantetheine attachment site EP560_RS01825 PF13193 AMP-binding enzyme C-terminal domain EP560_RS01825 PF00501 AMP-binding enzyme EP560_RS01840 PF00221 Aromatic amino acid lyase EP560_RS01860 PF04820 Tryptophan halogenase EP560_RS01870 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_RS01870 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_RS01885 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_RS01885 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_RS01900 PF02556 Preprotein translocase subunit SecB EP560_RS01905 PF00462 Glutaredoxin EP560_RS01915 PF03193 RsgA GTPase EP560_RS01920 PF00929 Exonuclease EP560_RS01935 PF02321 Outer membrane efflux protein EP560_RS01940 PF02687 FtsX-like permease family EP560_RS01940 PF12704 MacB-like periplasmic core domain EP560_RS01940 PF00005 ABC transporter EP560_RS01945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_RS01960 PF00133 tRNA synthetases class I (I, L, M and V) EP560_RS01960 PF13603 Leucyl-tRNA synthetase, Domain 2 EP560_RS01960 PF09334 tRNA synthetases class I (M) EP560_RS01960 PF08264 Anticodon-binding domain of tRNA EP560_RS01970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP560_RS01970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP560_RS01970 PF00205 Thiamine pyrophosphate enzyme, central domain EP560_RS01975 PF10369 Small subunit of acetolactate synthase EP560_RS01980 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EP560_RS01980 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EP560_RS01985 PF00563 EAL domain EP560_RS01985 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS01985 PF03707 Bacterial signalling protein N terminal repeat EP560_RS02010 PF16658 Class II release factor RF3, C-terminal domain EP560_RS02010 PF00009 Elongation factor Tu GTP binding domain EP560_RS02010 PF03144 Elongation factor Tu domain 2 EP560_RS02025 PF01026 TatD related DNase EP560_RS02030 PF00694 Aconitase C-terminal domain EP560_RS02030 PF00330 Aconitase family (aconitate hydratase) EP560_RS02040 PF00899 ThiF family EP560_RS02050 PF03466 LysR substrate binding domain EP560_RS02050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS02060 PF01207 Dihydrouridine synthase (Dus) EP560_RS02065 PF07690 Major Facilitator Superfamily EP560_RS02090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EP560_RS02090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EP560_RS02095 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EP560_RS02100 PF02233 NAD(P) transhydrogenase beta subunit EP560_RS02105 PF00106 short chain dehydrogenase EP560_RS02115 PF01261 Xylose isomerase-like TIM barrel EP560_RS02120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP560_RS02120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP560_RS02125 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS02130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EP560_RS02130 PF00672 HAMP domain EP560_RS02130 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS02130 PF01627 Hpt domain EP560_RS02130 PF00072 Response regulator receiver domain EP560_RS02135 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS02145 PF05958 tRNA (Uracil-5-)-methyltransferase EP560_RS02150 PF04607 Region found in RelA / SpoT proteins EP560_RS02150 PF13291 ACT domain EP560_RS02150 PF02824 TGS domain EP560_RS02160 PF03819 MazG nucleotide pyrophosphohydrolase domain EP560_RS02170 PF12626 Polymerase A arginine-rich C-terminus EP560_RS02170 PF01743 Poly A polymerase head domain EP560_RS02170 PF12627 Probable RNA and SrmB- binding site of polymerase A EP560_RS02175 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EP560_RS02180 PF02548 Ketopantoate hydroxymethyltransferase EP560_RS02185 PF02569 Pantoate-beta-alanine ligase EP560_RS02190 PF03668 P-loop ATPase protein family EP560_RS02195 PF00381 PTS HPr component phosphorylation site EP560_RS02200 PF04751 Protein of unknown function (DUF615) EP560_RS02205 PF00501 AMP-binding enzyme EP560_RS02205 PF13193 AMP-binding enzyme C-terminal domain EP560_RS02210 PF02824 TGS domain EP560_RS02210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP560_RS02210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP560_RS02210 PF03129 Anticodon binding domain EP560_RS02215 PF05198 Translation initiation factor IF-3, N-terminal domain EP560_RS02215 PF00707 Translation initiation factor IF-3, C-terminal domain EP560_RS02225 PF02798 Glutathione S-transferase, N-terminal domain EP560_RS02225 PF00043 Glutathione S-transferase, C-terminal domain EP560_RS02230 PF09335 SNARE associated Golgi protein EP560_RS02235 PF07690 Major Facilitator Superfamily EP560_RS02240 PF01632 Ribosomal protein L35 EP560_RS02245 PF00453 Ribosomal protein L20 EP560_RS02265 PF01409 tRNA synthetases class II core domain (F) EP560_RS02265 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EP560_RS02270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EP560_RS02270 PF03483 B3/4 domain EP560_RS02270 PF01588 Putative tRNA binding domain EP560_RS02270 PF03484 tRNA synthetase B5 domain EP560_RS02270 PF03147 Ferredoxin-fold anticodon binding domain EP560_RS02275 PF00216 Bacterial DNA-binding protein EP560_RS02290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP560_RS02290 PF07498 Rho termination factor, N-terminal domain EP560_RS02290 PF07497 Rho termination factor, RNA-binding domain EP560_RS02295 PF00085 Thioredoxin EP560_RS02300 PF02541 Ppx/GppA phosphatase family EP560_RS02305 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EP560_RS02310 PF01171 PP-loop family EP560_RS02310 PF09179 TilS substrate binding domain EP560_RS02310 PF11734 TilS substrate C-terminal domain EP560_RS02315 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP560_RS02315 PF03807 NADP oxidoreductase coenzyme F420-dependent EP560_RS02320 PF02325 YGGT family EP560_RS02325 PF00476 DNA polymerase family A EP560_RS02325 PF01612 3'-5' exonuclease EP560_RS02325 PF01367 5'-3' exonuclease, C-terminal SAM fold EP560_RS02325 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EP560_RS02345 PF00437 Type II/IV secretion system protein EP560_RS02350 PF02566 OsmC-like protein EP560_RS02355 PF01047 MarR family EP560_RS02365 PF00795 Carbon-nitrogen hydrolase EP560_RS02410 PF00309 Sigma-54 factor, Activator interacting domain (AID) EP560_RS02410 PF04552 Sigma-54, DNA binding domain EP560_RS02410 PF04963 Sigma-54 factor, core binding domain EP560_RS02415 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EP560_RS02420 PF01722 BolA-like protein EP560_RS02425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP560_RS02430 PF01634 ATP phosphoribosyltransferase EP560_RS02435 PF00815 Histidinol dehydrogenase EP560_RS02440 PF00155 Aminotransferase class I and II EP560_RS02445 PF04715 Anthranilate synthase component I, N terminal region EP560_RS02445 PF00425 chorismate binding enzyme EP560_RS02465 PF13005 zinc-finger binding domain of transposase IS66 EP560_RS02465 PF13007 Transposase C of IS166 homeodomain EP560_RS02465 PF13817 IS66 C-terminal element EP560_RS02465 PF03050 Transposase IS66 family EP560_RS02500 PF00293 NUDIX domain EP560_RS02505 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS02510 PF00814 Glycoprotease family EP560_RS02515 PF04445 Putative SAM-dependent methyltransferase EP560_RS02525 PF00756 Putative esterase EP560_RS02535 PF00834 Ribulose-phosphate 3 epimerase family EP560_RS02550 PF07732 Multicopper oxidase EP560_RS02550 PF07731 Multicopper oxidase EP560_RS02550 PF00394 Multicopper oxidase EP560_RS02555 PF05275 Copper resistance protein B precursor (CopB) EP560_RS02565 PF00893 Small Multidrug Resistance protein EP560_RS02570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP560_RS02570 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EP560_RS02575 PF01960 ArgJ family EP560_RS02580 PF02445 Quinolinate synthetase A protein EP560_RS02605 PF00962 Adenosine/AMP deaminase EP560_RS02610 PF00107 Zinc-binding dehydrogenase EP560_RS02610 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS02615 PF03466 LysR substrate binding domain EP560_RS02615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS02620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS02620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS02620 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS02625 PF07690 Major Facilitator Superfamily EP560_RS02630 PF02515 CoA-transferase family III EP560_RS02640 PF14537 Cytochrome c3 EP560_RS02640 PF00890 FAD binding domain EP560_RS02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS02645 PF03466 LysR substrate binding domain EP560_RS02655 PF07690 Major Facilitator Superfamily EP560_RS02665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS02665 PF03466 LysR substrate binding domain EP560_RS02675 PF01546 Peptidase family M20/M25/M40 EP560_RS02675 PF07687 Peptidase dimerisation domain EP560_RS02680 PF12833 Helix-turn-helix domain EP560_RS02680 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP560_RS02690 PF01810 LysE type translocator EP560_RS02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS02695 PF03466 LysR substrate binding domain EP560_RS02705 PF01717 Cobalamin-independent synthase, Catalytic domain EP560_RS02705 PF08267 Cobalamin-independent synthase, N-terminal domain EP560_RS02710 PF01613 Flavin reductase like domain EP560_RS02730 PF00665 Integrase core domain EP560_RS02730 PF13936 Helix-turn-helix domain EP560_RS02745 PF02567 Phenazine biosynthesis-like protein EP560_RS02765 PF13360 PQQ-like domain EP560_RS02765 PF01011 PQQ enzyme repeat EP560_RS02835 PF13756 Stimulus-sensing domain EP560_RS02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS02835 PF00672 HAMP domain EP560_RS02835 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS02835 PF13755 Sensor N-terminal transmembrane domain EP560_RS02845 PF00268 Ribonucleotide reductase, small chain EP560_RS02855 PF02867 Ribonucleotide reductase, barrel domain EP560_RS02855 PF00317 Ribonucleotide reductase, all-alpha domain EP560_RS02855 PF03477 ATP cone domain EP560_RS02865 PF00072 Response regulator receiver domain EP560_RS02865 PF00486 Transcriptional regulatory protein, C terminal EP560_RS02870 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS02870 PF00672 HAMP domain EP560_RS02870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS02880 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS02880 PF17151 Periplasmic sensor domain EP560_RS02885 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EP560_RS02890 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EP560_RS02895 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EP560_RS02895 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EP560_RS02905 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EP560_RS02905 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EP560_RS02905 PF10531 SLBB domain EP560_RS02910 PF00384 Molybdopterin oxidoreductase EP560_RS02910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP560_RS02910 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EP560_RS02915 PF00146 NADH dehydrogenase EP560_RS02920 PF12838 4Fe-4S dicluster domain EP560_RS02925 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EP560_RS02930 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EP560_RS02935 PF00361 Proton-conducting membrane transporter EP560_RS02935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EP560_RS02940 PF00361 Proton-conducting membrane transporter EP560_RS02945 PF00361 Proton-conducting membrane transporter EP560_RS02955 PF00313 'Cold-shock' DNA-binding domain EP560_RS02960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS02960 PF03466 LysR substrate binding domain EP560_RS02965 PF00970 Oxidoreductase FAD-binding domain EP560_RS02965 PF00175 Oxidoreductase NAD-binding domain EP560_RS02980 PF05552 Conserved TM helix EP560_RS02995 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS03000 PF13533 Biotin-lipoyl like EP560_RS03025 PF01588 Putative tRNA binding domain EP560_RS03025 PF09334 tRNA synthetases class I (M) EP560_RS03035 PF10609 NUBPL iron-transfer P-loop NTPase EP560_RS03045 PF01048 Phosphorylase superfamily EP560_RS03060 PF00692 dUTPase EP560_RS03095 PF01207 Dihydrouridine synthase (Dus) EP560_RS03105 PF00448 SRP54-type protein, GTPase domain EP560_RS03105 PF02978 Signal peptide binding domain EP560_RS03105 PF02881 SRP54-type protein, helical bundle domain EP560_RS03110 PF03309 Type III pantothenate kinase EP560_RS03120 PF01925 Sulfite exporter TauE/SafE EP560_RS03130 PF06470 SMC proteins Flexible Hinge Domain EP560_RS03130 PF02463 RecF/RecN/SMC N terminal domain EP560_RS03140 PF01653 NAD-dependent DNA ligase adenylation domain EP560_RS03140 PF03120 NAD-dependent DNA ligase OB-fold domain EP560_RS03140 PF12826 Helix-hairpin-helix motif EP560_RS03140 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EP560_RS03140 PF00533 BRCA1 C Terminus (BRCT) domain EP560_RS03145 PF00210 Ferritin-like domain EP560_RS03150 PF07690 Major Facilitator Superfamily EP560_RS03155 PF00982 Glycosyltransferase family 20 EP560_RS03160 PF02358 Trehalose-phosphatase EP560_RS03165 PF08241 Methyltransferase domain EP560_RS03165 PF12697 Alpha/beta hydrolase family EP560_RS03170 PF06968 Biotin and Thiamin Synthesis associated domain EP560_RS03170 PF00202 Aminotransferase class-III EP560_RS03170 PF04055 Radical SAM superfamily EP560_RS03175 PF00155 Aminotransferase class I and II EP560_RS03190 PF01479 S4 domain EP560_RS03190 PF00849 RNA pseudouridylate synthase EP560_RS03195 PF04079 Segregation and condensation complex subunit ScpB EP560_RS03200 PF02616 Segregation and condensation protein ScpA EP560_RS03205 PF01300 Telomere recombination EP560_RS03210 PF04315 Elongation factor P hydroxylase EP560_RS03215 PF02620 Large ribosomal RNA subunit accumulation protein YceD EP560_RS03220 PF01783 Ribosomal L32p protein family EP560_RS03225 PF00698 Acyl transferase domain EP560_RS03235 PF00550 Phosphopantetheine attachment site EP560_RS03240 PF04972 BON domain EP560_RS03240 PF01476 LysM domain EP560_RS03245 PF03070 TENA/THI-4/PQQC family EP560_RS03245 PF08543 Phosphomethylpyrimidine kinase EP560_RS03245 PF02581 Thiamine monophosphate synthase EP560_RS03255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP560_RS03270 PF02261 Aspartate decarboxylase EP560_RS03275 PF01195 Peptidyl-tRNA hydrolase EP560_RS03280 PF01386 Ribosomal L25p family EP560_RS03285 PF14572 Phosphoribosyl synthetase-associated domain EP560_RS03285 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP560_RS03310 PF00288 GHMP kinases N terminal domain EP560_RS03310 PF08544 GHMP kinases C terminal EP560_RS03315 PF03550 Outer membrane lipoprotein LolB EP560_RS03325 PF01488 Shikimate / quinate 5-dehydrogenase EP560_RS03325 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EP560_RS03325 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EP560_RS03330 PF08278 DNA primase DnaG DnaB-binding EP560_RS03330 PF10410 DnaB-helicase binding domain of primase EP560_RS03330 PF08275 DNA primase catalytic core, N-terminal domain EP560_RS03330 PF01807 CHC2 zinc finger EP560_RS03335 PF13525 Outer membrane lipoprotein EP560_RS03340 PF01479 S4 domain EP560_RS03340 PF00849 RNA pseudouridylate synthase EP560_RS03345 PF02578 Multi-copper polyphenol oxidoreductase laccase EP560_RS03350 PF03358 NADPH-dependent FMN reductase EP560_RS03355 PF01668 SmpB protein EP560_RS03360 PF01467 Cytidylyltransferase-like EP560_RS03365 PF00037 4Fe-4S binding domain EP560_RS03385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS03385 PF03466 LysR substrate binding domain EP560_RS03390 PF00180 Isocitrate/isopropylmalate dehydrogenase EP560_RS03395 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_RS03400 PF07859 alpha/beta hydrolase fold EP560_RS03405 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_RS03405 PF00355 Rieske [2Fe-2S] domain EP560_RS03410 PF00171 Aldehyde dehydrogenase family EP560_RS03415 PF00970 Oxidoreductase FAD-binding domain EP560_RS03415 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS03415 PF00175 Oxidoreductase NAD-binding domain EP560_RS03430 PF00795 Carbon-nitrogen hydrolase EP560_RS03430 PF02540 NAD synthase EP560_RS03440 PF02678 Pirin EP560_RS03440 PF05726 Pirin C-terminal cupin domain EP560_RS03445 PF03653 Uncharacterised protein family (UPF0093) EP560_RS03450 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_RS03450 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_RS03460 PF00164 Ribosomal protein S12/S23 EP560_RS03465 PF00177 Ribosomal protein S7p/S5e EP560_RS03470 PF00679 Elongation factor G C-terminus EP560_RS03470 PF03144 Elongation factor Tu domain 2 EP560_RS03470 PF00009 Elongation factor Tu GTP binding domain EP560_RS03470 PF03764 Elongation factor G, domain IV EP560_RS03470 PF14492 Elongation Factor G, domain II EP560_RS03475 PF03144 Elongation factor Tu domain 2 EP560_RS03475 PF00009 Elongation factor Tu GTP binding domain EP560_RS03475 PF03143 Elongation factor Tu C-terminal domain EP560_RS03490 PF00583 Acetyltransferase (GNAT) family EP560_RS03495 PF04377 Arginine-tRNA-protein transferase, C terminus EP560_RS03495 PF04376 Arginine-tRNA-protein transferase, N terminus EP560_RS03500 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EP560_RS03505 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS03510 PF17854 FtsK alpha domain EP560_RS03510 PF01580 FtsK/SpoIIIE family EP560_RS03510 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EP560_RS03510 PF09397 Ftsk gamma domain EP560_RS03515 PF03050 Transposase IS66 family EP560_RS03515 PF13817 IS66 C-terminal element EP560_RS03515 PF13005 zinc-finger binding domain of transposase IS66 EP560_RS03515 PF13007 Transposase C of IS166 homeodomain EP560_RS03530 PF01810 LysE type translocator EP560_RS03545 PF03776 Septum formation topological specificity factor MinE EP560_RS03550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EP560_RS03555 PF03775 Septum formation inhibitor MinC, C-terminal domain EP560_RS03565 PF01553 Acyltransferase EP560_RS03570 PF00691 OmpA family EP560_RS03570 PF13488 Glycine zipper EP560_RS03575 PF13361 UvrD-like helicase C-terminal domain EP560_RS03575 PF00580 UvrD/REP helicase N-terminal domain EP560_RS03580 PF00692 dUTPase EP560_RS03585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP560_RS03585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP560_RS03585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP560_RS03585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP560_RS03590 PF00696 Amino acid kinase family EP560_RS03600 PF13230 Glutamine amidotransferases class-II EP560_RS03605 PF01814 Hemerythrin HHE cation binding domain EP560_RS03620 PF03658 RnfH family Ubiquitin EP560_RS03625 PF04355 SmpA / OmlA family EP560_RS03630 PF01475 Ferric uptake regulator family EP560_RS03635 PF00437 Type II/IV secretion system protein EP560_RS03640 PF00437 Type II/IV secretion system protein EP560_RS03645 PF01168 Alanine racemase, N-terminal domain EP560_RS03655 PF12320 Type 5 capsule protein repressor C-terminal domain EP560_RS03655 PF00149 Calcineurin-like phosphoesterase EP560_RS03675 PF08338 Domain of unknown function (DUF1731) EP560_RS03675 PF01370 NAD dependent epimerase/dehydratase family EP560_RS03680 PF01266 FAD dependent oxidoreductase EP560_RS03685 PF00490 Delta-aminolevulinic acid dehydratase EP560_RS03690 PF03061 Thioesterase superfamily EP560_RS03695 PF13533 Biotin-lipoyl like EP560_RS03700 PF07690 Major Facilitator Superfamily EP560_RS03755 PF00083 Sugar (and other) transporter EP560_RS03760 PF00701 Dihydrodipicolinate synthetase family EP560_RS03770 PF08281 Sigma-70, region 4 EP560_RS03770 PF04542 Sigma-70 region 2 EP560_RS03780 PF00593 TonB dependent receptor EP560_RS03780 PF07715 TonB-dependent Receptor Plug Domain EP560_RS03795 PF04575 Protein of unknown function (DUF560) EP560_RS03830 PF13520 Amino acid permease EP560_RS03835 PF02574 Homocysteine S-methyltransferase EP560_RS03845 PF06039 Malate:quinone oxidoreductase (Mqo) EP560_RS03850 PF05199 GMC oxidoreductase EP560_RS03850 PF00732 GMC oxidoreductase EP560_RS03855 PF00171 Aldehyde dehydrogenase family EP560_RS03860 PF13977 BetI-type transcriptional repressor, C-terminal EP560_RS03860 PF00440 Bacterial regulatory proteins, tetR family EP560_RS03865 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_RS03870 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_RS03880 PF03061 Thioesterase superfamily EP560_RS03890 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP560_RS03890 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP560_RS03895 PF00375 Sodium:dicarboxylate symporter family EP560_RS03900 PF07152 YaeQ protein EP560_RS03905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_RS03910 PF01522 Polysaccharide deacetylase EP560_RS03910 PF14883 Hypothetical glycosyl hydrolase family 13 EP560_RS03915 PF00535 Glycosyl transferase family 2 EP560_RS03925 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS03940 PF01614 Bacterial transcriptional regulator EP560_RS03940 PF09339 IclR helix-turn-helix domain EP560_RS03945 PF00355 Rieske [2Fe-2S] domain EP560_RS03955 PF00355 Rieske [2Fe-2S] domain EP560_RS03965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_RS03970 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS03970 PF14759 Reductase C-terminal EP560_RS03975 PF07690 Major Facilitator Superfamily EP560_RS03985 PF12697 Alpha/beta hydrolase family EP560_RS03995 PF03447 Homoserine dehydrogenase, NAD binding domain EP560_RS03995 PF01958 Domain of unknown function DUF108 EP560_RS04000 PF00171 Aldehyde dehydrogenase family EP560_RS04005 PF00205 Thiamine pyrophosphate enzyme, central domain EP560_RS04005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP560_RS04005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP560_RS04015 PF07690 Major Facilitator Superfamily EP560_RS04020 PF01327 Polypeptide deformylase EP560_RS04025 PF04960 Glutaminase EP560_RS04030 PF02311 AraC-like ligand binding domain EP560_RS04030 PF12833 Helix-turn-helix domain EP560_RS04035 PF07690 Major Facilitator Superfamily EP560_RS04040 PF01263 Aldose 1-epimerase EP560_RS04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS04055 PF03466 LysR substrate binding domain EP560_RS04065 PF07690 Major Facilitator Superfamily EP560_RS04070 PF00456 Transketolase, thiamine diphosphate binding domain EP560_RS04075 PF02779 Transketolase, pyrimidine binding domain EP560_RS04075 PF02780 Transketolase, C-terminal domain EP560_RS04080 PF02310 B12 binding domain EP560_RS04080 PF02574 Homocysteine S-methyltransferase EP560_RS04080 PF00809 Pterin binding enzyme EP560_RS04080 PF02965 Vitamin B12 dependent methionine synthase, activation domain EP560_RS04080 PF02607 B12 binding domain EP560_RS04085 PF01384 Phosphate transporter family EP560_RS04090 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS04105 PF03781 Sulfatase-modifying factor enzyme 1 EP560_RS04110 PF00884 Sulfatase EP560_RS04120 PF01521 Iron-sulphur cluster biosynthesis EP560_RS04120 PF01106 NifU-like domain EP560_RS04125 PF00593 TonB dependent receptor EP560_RS04125 PF07715 TonB-dependent Receptor Plug Domain EP560_RS04140 PF00484 Carbonic anhydrase EP560_RS04145 PF13472 GDSL-like Lipase/Acylhydrolase family EP560_RS04150 PF00005 ABC transporter EP560_RS04160 PF01694 Rhomboid family EP560_RS04165 PF00912 Transglycosylase EP560_RS04170 PF02503 Polyphosphate kinase middle domain EP560_RS04170 PF13090 Polyphosphate kinase C-terminal domain 2 EP560_RS04170 PF17941 Polyphosphate kinase C-terminal domain 1 EP560_RS04170 PF13089 Polyphosphate kinase N-terminal domain EP560_RS04185 PF03466 LysR substrate binding domain EP560_RS04185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS04190 PF00561 alpha/beta hydrolase fold EP560_RS04195 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS04195 PF18113 Rubredoxin binding C-terminal domain EP560_RS04200 PF00301 Rubredoxin EP560_RS04215 PF00152 tRNA synthetases class II (D, K and N) EP560_RS04215 PF01336 OB-fold nucleic acid binding domain EP560_RS04220 PF14052 Capsule assembly protein Wzi EP560_RS04230 PF01507 Phosphoadenosine phosphosulfate reductase family EP560_RS04235 PF00009 Elongation factor Tu GTP binding domain EP560_RS04250 PF03600 Citrate transporter EP560_RS04260 PF03471 Transporter associated domain EP560_RS04260 PF00571 CBS domain EP560_RS04260 PF01595 Cyclin M transmembrane N-terminal domain EP560_RS04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS04265 PF03466 LysR substrate binding domain EP560_RS04270 PF00463 Isocitrate lyase family EP560_RS04285 PF01774 UreD urease accessory protein EP560_RS04290 PF00547 Urease, gamma subunit EP560_RS04295 PF00699 Urease beta subunit EP560_RS04305 PF02814 UreE urease accessory protein, N-terminal domain EP560_RS04305 PF05194 UreE urease accessory protein, C-terminal domain EP560_RS04310 PF01730 UreF EP560_RS04315 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP560_RS04330 PF00905 Penicillin binding protein transpeptidase domain EP560_RS04330 PF03717 Penicillin-binding Protein dimerisation domain EP560_RS04345 PF05191 Adenylate kinase, active site lid EP560_RS04355 PF00633 Helix-hairpin-helix motif EP560_RS04355 PF00730 HhH-GPD superfamily base excision DNA repair protein EP560_RS04355 PF10576 Iron-sulfur binding domain of endonuclease III EP560_RS04360 PF04060 Putative Fe-S cluster EP560_RS04365 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP560_RS04365 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP560_RS04375 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase EP560_RS04380 PF02590 Predicted SPOUT methyltransferase EP560_RS04385 PF00004 ATPase family associated with various cellular activities (AAA) EP560_RS04385 PF02190 ATP-dependent protease La (LON) substrate-binding domain EP560_RS04385 PF05362 Lon protease (S16) C-terminal proteolytic domain EP560_RS04390 PF13018 Extended Signal Peptide of Type V secretion system EP560_RS04390 PF03895 YadA-like membrane anchor domain EP560_RS04390 PF05658 Head domain of trimeric autotransporter adhesin EP560_RS04390 PF05662 Coiled stalk of trimeric autotransporter adhesin EP560_RS04395 PF00691 OmpA family EP560_RS04395 PF04355 SmpA / OmlA family EP560_RS04400 PF01812 5-formyltetrahydrofolate cyclo-ligase family EP560_RS04565 PF13737 Transposase DDE domain EP560_RS04720 PF03869 Arc-like DNA binding domain EP560_RS04785 PF13356 Arm DNA-binding domain EP560_RS04785 PF00589 Phage integrase family EP560_RS04795 PF00854 POT family EP560_RS04800 PF00120 Glutamine synthetase, catalytic domain EP560_RS04800 PF03951 Glutamine synthetase, beta-Grasp domain EP560_RS04805 PF04345 Chorismate lyase EP560_RS04810 PF01040 UbiA prenyltransferase family EP560_RS04845 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EP560_RS04845 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EP560_RS04850 PF01784 NIF3 (NGG1p interacting factor 3) EP560_RS04855 PF13180 PDZ domain EP560_RS04860 PF01743 Poly A polymerase head domain EP560_RS04860 PF12627 Probable RNA and SrmB- binding site of polymerase A EP560_RS04865 PF00390 Malic enzyme, N-terminal domain EP560_RS04865 PF03949 Malic enzyme, NAD binding domain EP560_RS04865 PF01515 Phosphate acetyl/butaryl transferase EP560_RS04870 PF03707 Bacterial signalling protein N terminal repeat EP560_RS04870 PF00563 EAL domain EP560_RS04870 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS04875 PF13737 Transposase DDE domain EP560_RS04880 PF04452 RNA methyltransferase EP560_RS04885 PF02219 Methylenetetrahydrofolate reductase EP560_RS04890 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EP560_RS04890 PF05221 S-adenosyl-L-homocysteine hydrolase EP560_RS04905 PF09317 Domain of unknown function (DUF1974) EP560_RS04905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS04905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS04910 PF04055 Radical SAM superfamily EP560_RS04915 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS04915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_RS04925 PF07690 Major Facilitator Superfamily EP560_RS04935 PF00557 Metallopeptidase family M24 EP560_RS04940 PF00318 Ribosomal protein S2 EP560_RS04945 PF00889 Elongation factor TS EP560_RS04955 PF12833 Helix-turn-helix domain EP560_RS04975 PF03330 Lytic transglycolase EP560_RS04975 PF05036 Sporulation related domain EP560_RS04980 PF13406 Transglycosylase SLT domain EP560_RS04985 PF01098 Cell cycle protein EP560_RS04995 PF14489 QueF-like protein EP560_RS04995 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EP560_RS05000 PF01061 ABC-2 type transporter EP560_RS05005 PF00005 ABC transporter EP560_RS05035 PF00464 Serine hydroxymethyltransferase EP560_RS05040 PF02321 Outer membrane efflux protein EP560_RS05045 PF00873 AcrB/AcrD/AcrF family EP560_RS05050 PF13533 Biotin-lipoyl like EP560_RS05055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS05055 PF03466 LysR substrate binding domain EP560_RS05060 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_RS05065 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS05070 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS05075 PF00005 ABC transporter EP560_RS05080 PF00893 Small Multidrug Resistance protein EP560_RS05085 PF00037 4Fe-4S binding domain EP560_RS05090 PF01136 Peptidase family U32 EP560_RS05090 PF16325 Peptidase family U32 C-terminal domain EP560_RS05095 PF00392 Bacterial regulatory proteins, gntR family EP560_RS05095 PF00155 Aminotransferase class I and II EP560_RS05100 PF02567 Phenazine biosynthesis-like protein EP560_RS05105 PF00175 Oxidoreductase NAD-binding domain EP560_RS05105 PF00970 Oxidoreductase FAD-binding domain EP560_RS05110 PF18389 TrmO C-terminal domain EP560_RS05110 PF01980 tRNA-methyltransferase O EP560_RS05120 PF00437 Type II/IV secretion system protein EP560_RS05120 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EP560_RS05130 PF00486 Transcriptional regulatory protein, C terminal EP560_RS05130 PF00072 Response regulator receiver domain EP560_RS05135 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS05135 PF08521 Two-component sensor kinase N-terminal EP560_RS05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS05145 PF00293 NUDIX domain EP560_RS05155 PF00905 Penicillin binding protein transpeptidase domain EP560_RS05155 PF00912 Transglycosylase EP560_RS05155 PF14814 Bifunctional transglycosylase second domain EP560_RS05160 PF01513 ATP-NAD kinase EP560_RS05165 PF07023 Protein of unknown function (DUF1315) EP560_RS05170 PF02885 Glycosyl transferase family, helical bundle domain EP560_RS05170 PF00591 Glycosyl transferase family, a/b domain EP560_RS05180 PF00375 Sodium:dicarboxylate symporter family EP560_RS05185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS05185 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS05185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS05190 PF00756 Putative esterase EP560_RS05195 PF01842 ACT domain EP560_RS05195 PF01817 Chorismate mutase type II EP560_RS05195 PF00800 Prephenate dehydratase EP560_RS05200 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EP560_RS05210 PF01546 Peptidase family M20/M25/M40 EP560_RS05210 PF07687 Peptidase dimerisation domain EP560_RS05215 PF12706 Beta-lactamase superfamily domain EP560_RS05225 PF03883 Peroxide stress protein YaaA EP560_RS05235 PF05690 Thiazole biosynthesis protein ThiG EP560_RS05245 PF04241 Protein of unknown function (DUF423) EP560_RS05250 PF04542 Sigma-70 region 2 EP560_RS05250 PF04545 Sigma-70, region 4 EP560_RS05250 PF00140 Sigma-70 factor, region 1.2 EP560_RS05260 PF00313 'Cold-shock' DNA-binding domain EP560_RS05265 PF00270 DEAD/DEAH box helicase EP560_RS05265 PF00271 Helicase conserved C-terminal domain EP560_RS05275 PF00881 Nitroreductase family EP560_RS05280 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EP560_RS05280 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EP560_RS05300 PF01180 Dihydroorotate dehydrogenase EP560_RS05305 PF02674 Colicin V production protein EP560_RS05310 PF00156 Phosphoribosyl transferase domain EP560_RS05325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_RS05325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_RS05330 PF01435 Peptidase family M48 EP560_RS05335 PF09424 Yqey-like protein EP560_RS05340 PF01165 Ribosomal protein S21 EP560_RS05345 PF00814 Glycoprotease family EP560_RS05365 PF00069 Protein kinase domain EP560_RS05390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS05390 PF03466 LysR substrate binding domain EP560_RS05395 PF00202 Aminotransferase class-III EP560_RS05400 PF00171 Aldehyde dehydrogenase family EP560_RS05405 PF00324 Amino acid permease EP560_RS05435 PF04076 Bacterial OB fold (BOF) protein EP560_RS05460 PF00561 alpha/beta hydrolase fold EP560_RS05465 PF03616 Sodium/glutamate symporter EP560_RS05475 PF07729 FCD domain EP560_RS05475 PF00392 Bacterial regulatory proteins, gntR family EP560_RS05525 PF00083 Sugar (and other) transporter EP560_RS05525 PF08946 Osmosensory transporter coiled coil EP560_RS05550 PF00155 Aminotransferase class I and II EP560_RS05555 PF02080 TrkA-C domain EP560_RS05555 PF06826 Predicted Permease Membrane Region EP560_RS05565 PF04403 Paraquat-inducible protein A EP560_RS05570 PF02470 MlaD protein EP560_RS05580 PF01177 Asp/Glu/Hydantoin racemase EP560_RS05585 PF00892 EamA-like transporter family EP560_RS05590 PF07995 Glucose / Sorbosone dehydrogenase EP560_RS05610 PF00375 Sodium:dicarboxylate symporter family EP560_RS05620 PF16123 Hydroxyacylglutathione hydrolase C-terminus EP560_RS05620 PF00753 Metallo-beta-lactamase superfamily EP560_RS05625 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS05630 PF00005 ABC transporter EP560_RS05630 PF09383 NIL domain EP560_RS05635 PF03180 NLPA lipoprotein EP560_RS05640 PF02843 Phosphoribosylglycinamide synthetase, C domain EP560_RS05640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EP560_RS05640 PF02844 Phosphoribosylglycinamide synthetase, N domain EP560_RS05645 PF02142 MGS-like domain EP560_RS05645 PF01808 AICARFT/IMPCHase bienzyme EP560_RS05650 PF02954 Bacterial regulatory protein, Fis family EP560_RS05670 PF13932 GidA associated domain EP560_RS05670 PF01134 Glucose inhibited division protein A EP560_RS05680 PF14403 Circularly permuted ATP-grasp type 2 EP560_RS05690 PF01841 Transglutaminase-like superfamily EP560_RS05690 PF08379 Bacterial transglutaminase-like N-terminal region EP560_RS05700 PF00842 Alanine racemase, C-terminal domain EP560_RS05700 PF01168 Alanine racemase, N-terminal domain EP560_RS05705 PF03796 DnaB-like helicase C terminal domain EP560_RS05705 PF00772 DnaB-like helicase N terminal domain EP560_RS05710 PF03948 Ribosomal protein L9, C-terminal domain EP560_RS05710 PF01281 Ribosomal protein L9, N-terminal domain EP560_RS05715 PF01084 Ribosomal protein S18 EP560_RS05720 PF01250 Ribosomal protein S6 EP560_RS05725 PF01040 UbiA prenyltransferase family EP560_RS05730 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EP560_RS05735 PF00510 Cytochrome c oxidase subunit III EP560_RS05740 PF00115 Cytochrome C and Quinol oxidase polypeptide I EP560_RS05745 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EP560_RS05745 PF06481 COX Aromatic Rich Motif EP560_RS05755 PF00391 PEP-utilising enzyme, mobile domain EP560_RS05755 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EP560_RS05755 PF02896 PEP-utilising enzyme, TIM barrel domain EP560_RS05760 PF03618 Kinase/pyrophosphorylase EP560_RS05770 PF14883 Hypothetical glycosyl hydrolase family 13 EP560_RS05770 PF01522 Polysaccharide deacetylase EP560_RS05775 PF00535 Glycosyl transferase family 2 EP560_RS05780 PF13994 PgaD-like protein EP560_RS05790 PF00296 Luciferase-like monooxygenase EP560_RS05810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS05810 PF03466 LysR substrate binding domain EP560_RS05820 PF00472 RF-1 domain EP560_RS05820 PF03462 PCRF domain EP560_RS05825 PF17827 PrmC N-terminal domain EP560_RS05825 PF13847 Methyltransferase domain EP560_RS05830 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS05835 PF09084 NMT1/THI5 like EP560_RS05840 PF12833 Helix-turn-helix domain EP560_RS05845 PF00106 short chain dehydrogenase EP560_RS05850 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS05850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS05850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS05855 PF00501 AMP-binding enzyme EP560_RS05855 PF13193 AMP-binding enzyme C-terminal domain EP560_RS05860 PF01613 Flavin reductase like domain EP560_RS05865 PF00899 ThiF family EP560_RS05870 PF03109 ABC1 family EP560_RS05885 PF03814 Potassium-transporting ATPase A subunit EP560_RS05895 PF02669 K+-transporting ATPase, c chain EP560_RS05905 PF00072 Response regulator receiver domain EP560_RS05905 PF00486 Transcriptional regulatory protein, C terminal EP560_RS05910 PF00120 Glutamine synthetase, catalytic domain EP560_RS05920 PF03232 Ubiquinone biosynthesis protein COQ7 EP560_RS05925 PF07690 Major Facilitator Superfamily EP560_RS05930 PF17243 POTRA domain TamA domain 1 EP560_RS05930 PF07244 Surface antigen variable number repeat EP560_RS05930 PF01103 Surface antigen EP560_RS05950 PF06434 Aconitate hydratase 2 N-terminus EP560_RS05950 PF11791 Aconitate B N-terminal domain EP560_RS05950 PF00330 Aconitase family (aconitate hydratase) EP560_RS05960 PF00027 Cyclic nucleotide-binding domain EP560_RS05960 PF00520 Ion transport protein EP560_RS05965 PF07690 Major Facilitator Superfamily EP560_RS05980 PF03466 LysR substrate binding domain EP560_RS05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS05985 PF04284 Protein of unknown function (DUF441) EP560_RS05995 PF00849 RNA pseudouridylate synthase EP560_RS05995 PF01479 S4 domain EP560_RS06010 PF00849 RNA pseudouridylate synthase EP560_RS06010 PF01479 S4 domain EP560_RS06015 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EP560_RS06020 PF08676 MutL C terminal dimerisation domain EP560_RS06020 PF01119 DNA mismatch repair protein, C-terminal domain EP560_RS06030 PF17209 Hfq protein EP560_RS06040 PF00881 Nitroreductase family EP560_RS06050 PF00149 Calcineurin-like phosphoesterase EP560_RS06055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP560_RS06060 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP560_RS06060 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EP560_RS06075 PF00117 Glutamine amidotransferase class-I EP560_RS06075 PF00958 GMP synthase C terminal domain EP560_RS06075 PF02540 NAD synthase EP560_RS06080 PF05985 Ethanolamine ammonia-lyase light chain (EutC) EP560_RS06085 PF06751 Ethanolamine ammonia lyase large subunit (EutB) EP560_RS06090 PF13520 Amino acid permease EP560_RS06095 PF00171 Aldehyde dehydrogenase family EP560_RS06110 PF00465 Iron-containing alcohol dehydrogenase EP560_RS06115 PF05970 PIF1-like helicase EP560_RS06115 PF14493 Helix-turn-helix domain EP560_RS06125 PF06445 GyrI-like small molecule binding domain EP560_RS06130 PF02110 Hydroxyethylthiazole kinase family EP560_RS06145 PF01433 Peptidase family M1 domain EP560_RS06145 PF11940 Domain of unknown function (DUF3458) Ig-like fold EP560_RS06145 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EP560_RS06155 PF00106 short chain dehydrogenase EP560_RS06165 PF01817 Chorismate mutase type II EP560_RS06170 PF01037 Lrp/AsnC ligand binding domain EP560_RS06185 PF00440 Bacterial regulatory proteins, tetR family EP560_RS06190 PF07715 TonB-dependent Receptor Plug Domain EP560_RS06190 PF00593 TonB dependent receptor EP560_RS06195 PF00924 Mechanosensitive ion channel EP560_RS06230 PF07715 TonB-dependent Receptor Plug Domain EP560_RS06230 PF00593 TonB dependent receptor EP560_RS06250 PF00005 ABC transporter EP560_RS06250 PF12848 ABC transporter EP560_RS06255 PF00582 Universal stress protein family EP560_RS06270 PF00690 Cation transporter/ATPase, N-terminus EP560_RS06270 PF00689 Cation transporting ATPase, C-terminus EP560_RS06275 PF02308 MgtC family EP560_RS06280 PF03594 Benzoate membrane transport protein EP560_RS06285 PF01037 Lrp/AsnC ligand binding domain EP560_RS06290 PF01810 LysE type translocator EP560_RS06295 PF00923 Transaldolase/Fructose-6-phosphate aldolase EP560_RS06300 PF03466 LysR substrate binding domain EP560_RS06300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS06310 PF02803 Thiolase, C-terminal domain EP560_RS06310 PF00108 Thiolase, N-terminal domain EP560_RS06320 PF01575 MaoC like domain EP560_RS06325 PF00144 Beta-lactamase EP560_RS06335 PF07690 Major Facilitator Superfamily EP560_RS06340 PF12170 DNA polymerase III tau subunit V interacting with alpha EP560_RS06340 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EP560_RS06340 PF12169 DNA polymerase III subunits gamma and tau domain III EP560_RS06345 PF05506 Domain of unknown function (DUF756) EP560_RS06345 PF04185 Phosphoesterase family EP560_RS06350 PF03061 Thioesterase superfamily EP560_RS06355 PF00465 Iron-containing alcohol dehydrogenase EP560_RS06365 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP560_RS06370 PF01565 FAD binding domain EP560_RS06370 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EP560_RS06385 PF01645 Conserved region in glutamate synthase EP560_RS06470 PF00145 C-5 cytosine-specific DNA methylase EP560_RS06520 PF13936 Helix-turn-helix domain EP560_RS06520 PF00665 Integrase core domain EP560_RS06580 PF13007 Transposase C of IS166 homeodomain EP560_RS06580 PF03050 Transposase IS66 family EP560_RS06580 PF13817 IS66 C-terminal element EP560_RS06580 PF13005 zinc-finger binding domain of transposase IS66 EP560_RS06660 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP560_RS06670 PF13737 Transposase DDE domain EP560_RS06675 PF00884 Sulfatase EP560_RS06675 PF08019 Phosphoethanolamine transferase EptA/EptB EP560_RS06685 PF12832 MFS_1 like family EP560_RS06695 PF00289 Biotin carboxylase, N-terminal domain EP560_RS06695 PF02785 Biotin carboxylase C-terminal domain EP560_RS06695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_RS06700 PF00364 Biotin-requiring enzyme EP560_RS06705 PF01220 Dehydroquinase class II EP560_RS06710 PF00817 impB/mucB/samB family EP560_RS06710 PF13438 Domain of unknown function (DUF4113) EP560_RS06710 PF11799 impB/mucB/samB family C-terminal domain EP560_RS06720 PF00005 ABC transporter EP560_RS06725 PF00486 Transcriptional regulatory protein, C terminal EP560_RS06725 PF00072 Response regulator receiver domain EP560_RS06735 PF04324 BFD-like [2Fe-2S] binding domain EP560_RS06735 PF13806 Rieske-like [2Fe-2S] domain EP560_RS06735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP560_RS06735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP560_RS06735 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP560_RS06735 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS06740 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP560_RS06740 PF04324 BFD-like [2Fe-2S] binding domain EP560_RS06740 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS06740 PF18267 Rubredoxin NAD+ reductase C-terminal domain EP560_RS06740 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP560_RS06745 PF04324 BFD-like [2Fe-2S] binding domain EP560_RS06745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP560_RS06745 PF00384 Molybdopterin oxidoreductase EP560_RS06745 PF01568 Molydopterin dinucleotide binding domain EP560_RS06750 PF12804 MobA-like NTP transferase domain EP560_RS06755 PF00384 Molybdopterin oxidoreductase EP560_RS06755 PF01568 Molydopterin dinucleotide binding domain EP560_RS06755 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EP560_RS06760 PF06463 Molybdenum Cofactor Synthesis C EP560_RS06760 PF04055 Radical SAM superfamily EP560_RS06770 PF02391 MoaE protein EP560_RS06775 PF00994 Probable molybdopterin binding domain EP560_RS06775 PF01967 MoaC family EP560_RS06780 PF03454 MoeA C-terminal region (domain IV) EP560_RS06780 PF03453 MoeA N-terminal region (domain I and II) EP560_RS06780 PF00994 Probable molybdopterin binding domain EP560_RS06785 PF01638 HxlR-like helix-turn-helix EP560_RS06790 PF00155 Aminotransferase class I and II EP560_RS06790 PF00392 Bacterial regulatory proteins, gntR family EP560_RS06795 PF00892 EamA-like transporter family EP560_RS06815 PF02635 DsrE/DsrF-like family EP560_RS06820 PF16363 GDP-mannose 4,6 dehydratase EP560_RS06825 PF00206 Lyase EP560_RS06825 PF10415 Fumarase C C-terminus EP560_RS06850 PF01266 FAD dependent oxidoreductase EP560_RS06860 PF02542 YgbB family EP560_RS06870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP560_RS06870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP560_RS06875 PF00440 Bacterial regulatory proteins, tetR family EP560_RS06880 PF00158 Sigma-54 interaction domain EP560_RS06880 PF02954 Bacterial regulatory protein, Fis family EP560_RS06880 PF00072 Response regulator receiver domain EP560_RS06885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS06885 PF00989 PAS fold EP560_RS06885 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS06895 PF04055 Radical SAM superfamily EP560_RS06895 PF00919 Uncharacterized protein family UPF0004 EP560_RS06895 PF18693 TRAM domain EP560_RS06900 PF00696 Amino acid kinase family EP560_RS06905 PF01765 Ribosome recycling factor EP560_RS06910 PF01255 Putative undecaprenyl diphosphate synthase EP560_RS06920 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EP560_RS06920 PF13288 DXP reductoisomerase C-terminal domain EP560_RS06920 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EP560_RS06925 PF02163 Peptidase family M50 EP560_RS06925 PF17820 PDZ domain EP560_RS06925 PF13180 PDZ domain EP560_RS06930 PF07244 Surface antigen variable number repeat EP560_RS06930 PF01103 Surface antigen EP560_RS06940 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EP560_RS06940 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS06945 PF07977 FabA-like domain EP560_RS06950 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EP560_RS06950 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS06965 PF02631 RecX family EP560_RS06970 PF00154 recA bacterial DNA recombination protein EP560_RS06975 PF01479 S4 domain EP560_RS06980 PF13419 Haloacid dehalogenase-like hydrolase EP560_RS07005 PF01037 Lrp/AsnC ligand binding domain EP560_RS07010 PF00266 Aminotransferase class-V EP560_RS07015 PF00324 Amino acid permease EP560_RS07025 PF00082 Subtilase family EP560_RS07025 PF05922 Peptidase inhibitor I9 EP560_RS07030 PF00916 Sulfate permease family EP560_RS07030 PF01740 STAS domain EP560_RS07035 PF02586 SOS response associated peptidase (SRAP) EP560_RS07040 PF07995 Glucose / Sorbosone dehydrogenase EP560_RS07050 PF03707 Bacterial signalling protein N terminal repeat EP560_RS07050 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS07050 PF00563 EAL domain EP560_RS07070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EP560_RS07070 PF02378 Phosphotransferase system, EIIC EP560_RS07075 PF00294 pfkB family carbohydrate kinase EP560_RS07080 PF05524 PEP-utilising enzyme, N-terminal EP560_RS07080 PF02896 PEP-utilising enzyme, TIM barrel domain EP560_RS07080 PF00391 PEP-utilising enzyme, mobile domain EP560_RS07080 PF00381 PTS HPr component phosphorylation site EP560_RS07080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EP560_RS07105 PF05525 Branched-chain amino acid transport protein EP560_RS07110 PF00557 Metallopeptidase family M24 EP560_RS07115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS07115 PF03466 LysR substrate binding domain EP560_RS07125 PF00462 Glutaredoxin EP560_RS07130 PF00202 Aminotransferase class-III EP560_RS07135 PF00571 CBS domain EP560_RS07135 PF00478 IMP dehydrogenase / GMP reductase domain EP560_RS07160 PF00448 SRP54-type protein, GTPase domain EP560_RS07160 PF02881 SRP54-type protein, helical bundle domain EP560_RS07170 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EP560_RS07185 PF08173 Membrane bound YbgT-like protein EP560_RS07190 PF02322 Cytochrome bd terminal oxidase subunit II EP560_RS07195 PF01654 Cytochrome bd terminal oxidase subunit I EP560_RS07205 PF13737 Transposase DDE domain EP560_RS07210 PF13936 Helix-turn-helix domain EP560_RS07210 PF00665 Integrase core domain EP560_RS07215 PF07290 Protein of unknown function (DUF1449) EP560_RS07225 PF00294 pfkB family carbohydrate kinase EP560_RS07230 PF00593 TonB dependent receptor EP560_RS07230 PF07715 TonB-dependent Receptor Plug Domain EP560_RS07235 PF08367 Peptidase M16C associated EP560_RS07235 PF05193 Peptidase M16 inactive domain EP560_RS07235 PF00675 Insulinase (Peptidase family M16) EP560_RS07240 PF02253 Phospholipase A1 EP560_RS07245 PF02386 Cation transport protein EP560_RS07250 PF02080 TrkA-C domain EP560_RS07250 PF02254 TrkA-N domain EP560_RS07255 PF00585 C-terminal regulatory domain of Threonine dehydratase EP560_RS07255 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS07260 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EP560_RS07275 PF02774 Semialdehyde dehydrogenase, dimerisation domain EP560_RS07275 PF01118 Semialdehyde dehydrogenase, NAD binding domain EP560_RS07285 PF02617 ATP-dependent Clp protease adaptor protein ClpS EP560_RS07290 PF00004 ATPase family associated with various cellular activities (AAA) EP560_RS07290 PF17871 AAA lid domain EP560_RS07290 PF02861 Clp amino terminal domain, pathogenicity island component EP560_RS07290 PF07724 AAA domain (Cdc48 subfamily) EP560_RS07290 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_RS07295 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EP560_RS07300 PF00793 DAHP synthetase I family EP560_RS07315 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS07315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_RS07345 PF06418 CTP synthase N-terminus EP560_RS07345 PF00117 Glutamine amidotransferase class-I EP560_RS07350 PF00793 DAHP synthetase I family EP560_RS07355 PF00113 Enolase, C-terminal TIM barrel domain EP560_RS07355 PF03952 Enolase, N-terminal domain EP560_RS07360 PF04239 Protein of unknown function (DUF421) EP560_RS07365 PF04977 Septum formation initiator EP560_RS07370 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EP560_RS07375 PF01144 Coenzyme A transferase EP560_RS07380 PF01144 Coenzyme A transferase EP560_RS07385 PF02803 Thiolase, C-terminal domain EP560_RS07385 PF00108 Thiolase, N-terminal domain EP560_RS07390 PF00206 Lyase EP560_RS07390 PF10397 Adenylosuccinate lyase C-terminus EP560_RS07395 PF00561 alpha/beta hydrolase fold EP560_RS07400 PF07690 Major Facilitator Superfamily EP560_RS07405 PF02627 Carboxymuconolactone decarboxylase family EP560_RS07410 PF00775 Dioxygenase EP560_RS07410 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal EP560_RS07415 PF00775 Dioxygenase EP560_RS07420 PF01487 Type I 3-dehydroquinase EP560_RS07425 PF05048 Periplasmic copper-binding protein (NosD) EP560_RS07430 PF04966 Carbohydrate-selective porin, OprB family EP560_RS07435 PF01011 PQQ enzyme repeat EP560_RS07435 PF13360 PQQ-like domain EP560_RS07445 PF04143 Sulphur transport EP560_RS07455 PF00753 Metallo-beta-lactamase superfamily EP560_RS07460 PF01614 Bacterial transcriptional regulator EP560_RS07460 PF09339 IclR helix-turn-helix domain EP560_RS07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS07465 PF03466 LysR substrate binding domain EP560_RS07470 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS07470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS07470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS07485 PF00106 short chain dehydrogenase EP560_RS07495 PF07690 Major Facilitator Superfamily EP560_RS07505 PF01425 Amidase EP560_RS07510 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS07525 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_RS07525 PF00355 Rieske [2Fe-2S] domain EP560_RS07540 PF00175 Oxidoreductase NAD-binding domain EP560_RS07540 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS07545 PF01613 Flavin reductase like domain EP560_RS07550 PF12833 Helix-turn-helix domain EP560_RS07550 PF02311 AraC-like ligand binding domain EP560_RS07555 PF01179 Copper amine oxidase, enzyme domain EP560_RS07555 PF02727 Copper amine oxidase, N2 domain EP560_RS07555 PF02728 Copper amine oxidase, N3 domain EP560_RS07555 PF07833 Copper amine oxidase N-terminal domain EP560_RS07565 PF00171 Aldehyde dehydrogenase family EP560_RS07570 PF01804 Penicillin amidase EP560_RS07575 PF12146 Serine aminopeptidase, S33 EP560_RS07580 PF00108 Thiolase, N-terminal domain EP560_RS07580 PF02803 Thiolase, C-terminal domain EP560_RS07585 PF01144 Coenzyme A transferase EP560_RS07590 PF01144 Coenzyme A transferase EP560_RS07595 PF00775 Dioxygenase EP560_RS07595 PF04444 Catechol dioxygenase N terminus EP560_RS07600 PF02426 Muconolactone delta-isomerase EP560_RS07605 PF13378 Enolase C-terminal domain-like EP560_RS07605 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP560_RS07610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS07610 PF03466 LysR substrate binding domain EP560_RS07620 PF00392 Bacterial regulatory proteins, gntR family EP560_RS07620 PF07729 FCD domain EP560_RS07625 PF00920 Dehydratase family EP560_RS07630 PF07690 Major Facilitator Superfamily EP560_RS07640 PF00171 Aldehyde dehydrogenase family EP560_RS07660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS07660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS07660 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS07670 PF00158 Sigma-54 interaction domain EP560_RS07670 PF06506 Propionate catabolism activator EP560_RS07670 PF02954 Bacterial regulatory protein, Fis family EP560_RS07675 PF13193 AMP-binding enzyme C-terminal domain EP560_RS07675 PF00501 AMP-binding enzyme EP560_RS07680 PF04341 Protein of unknown function, DUF485 EP560_RS07685 PF00474 Sodium:solute symporter family EP560_RS07690 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS07690 PF00107 Zinc-binding dehydrogenase EP560_RS07695 PF00171 Aldehyde dehydrogenase family EP560_RS07705 PF00561 alpha/beta hydrolase fold EP560_RS07710 PF00199 Catalase EP560_RS07710 PF06628 Catalase-related immune-responsive EP560_RS07730 PF07859 alpha/beta hydrolase fold EP560_RS07735 PF01047 MarR family EP560_RS07740 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS07740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_RS07745 PF00106 short chain dehydrogenase EP560_RS07750 PF01872 RibD C-terminal domain EP560_RS07755 PF09278 MerR, DNA binding EP560_RS07755 PF00376 MerR family regulatory protein EP560_RS07765 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS07775 PF12706 Beta-lactamase superfamily domain EP560_RS07780 PF08359 YsiA-like protein, C-terminal region EP560_RS07780 PF00440 Bacterial regulatory proteins, tetR family EP560_RS07790 PF13737 Transposase DDE domain EP560_RS07800 PF00857 Isochorismatase family EP560_RS07805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS07805 PF03466 LysR substrate binding domain EP560_RS07810 PF07995 Glucose / Sorbosone dehydrogenase EP560_RS07815 PF00999 Sodium/hydrogen exchanger family EP560_RS07815 PF02254 TrkA-N domain EP560_RS07825 PF01546 Peptidase family M20/M25/M40 EP560_RS07825 PF07687 Peptidase dimerisation domain EP560_RS07840 PF17287 POTRA domain EP560_RS07840 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB EP560_RS07840 PF08479 POTRA domain, ShlB-type EP560_RS07845 PF13018 Extended Signal Peptide of Type V secretion system EP560_RS07845 PF05860 haemagglutination activity domain EP560_RS07845 PF13332 Hemagglutinin repeat EP560_RS07845 PF04829 Pre-toxin domain with VENN motif EP560_RS07860 PF07690 Major Facilitator Superfamily EP560_RS07865 PF04909 Amidohydrolase EP560_RS07875 PF07702 UTRA domain EP560_RS07875 PF00392 Bacterial regulatory proteins, gntR family EP560_RS07880 PF08450 SMP-30/Gluconolactonase/LRE-like region EP560_RS07890 PF03466 LysR substrate binding domain EP560_RS07890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS07910 PF07690 Major Facilitator Superfamily EP560_RS07915 PF01842 ACT domain EP560_RS07915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_RS07915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_RS07920 PF03737 Aldolase/RraA EP560_RS07940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_RS07940 PF00529 HlyD membrane-fusion protein of T1SS EP560_RS07955 PF00171 Aldehyde dehydrogenase family EP560_RS07960 PF00920 Dehydratase family EP560_RS07970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS07970 PF03466 LysR substrate binding domain EP560_RS07975 PF01370 NAD dependent epimerase/dehydratase family EP560_RS07980 PF07690 Major Facilitator Superfamily EP560_RS07985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP560_RS07985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP560_RS07990 PF06719 AraC-type transcriptional regulator N-terminus EP560_RS07990 PF12833 Helix-turn-helix domain EP560_RS08005 PF00107 Zinc-binding dehydrogenase EP560_RS08005 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS08015 PF01032 FecCD transport family EP560_RS08020 PF00005 ABC transporter EP560_RS08040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EP560_RS08040 PF14572 Phosphoribosyl synthetase-associated domain EP560_RS08045 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP560_RS08120 PF00196 Bacterial regulatory proteins, luxR family EP560_RS08125 PF01425 Amidase EP560_RS08130 PF13533 Biotin-lipoyl like EP560_RS08135 PF07690 Major Facilitator Superfamily EP560_RS08160 PF01975 Survival protein SurE EP560_RS08170 PF02824 TGS domain EP560_RS08170 PF04607 Region found in RelA / SpoT proteins EP560_RS08170 PF13291 ACT domain EP560_RS08225 PF12146 Serine aminopeptidase, S33 EP560_RS08230 PF02311 AraC-like ligand binding domain EP560_RS08230 PF12833 Helix-turn-helix domain EP560_RS08245 PF00072 Response regulator receiver domain EP560_RS08245 PF00486 Transcriptional regulatory protein, C terminal EP560_RS08250 PF00529 HlyD membrane-fusion protein of T1SS EP560_RS08250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_RS08255 PF00873 AcrB/AcrD/AcrF family EP560_RS08260 PF02321 Outer membrane efflux protein EP560_RS08265 PF12146 Serine aminopeptidase, S33 EP560_RS08270 PF00743 Flavin-binding monooxygenase-like EP560_RS08275 PF01593 Flavin containing amine oxidoreductase EP560_RS08290 PF01266 FAD dependent oxidoreductase EP560_RS08310 PF16970 Type-1 fimbrial protein, A EP560_RS08315 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP560_RS08315 PF02753 Pili assembly chaperone PapD, C-terminal domain EP560_RS08320 PF00577 Outer membrane usher protein EP560_RS08320 PF13953 PapC C-terminal domain EP560_RS08320 PF13954 PapC N-terminal domain EP560_RS08325 PF00419 Fimbrial protein EP560_RS08335 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS08335 PF00107 Zinc-binding dehydrogenase EP560_RS08345 PF00199 Catalase EP560_RS08350 PF00665 Integrase core domain EP560_RS08350 PF13936 Helix-turn-helix domain EP560_RS08365 PF13091 PLD-like domain EP560_RS08395 PF01244 Membrane dipeptidase (Peptidase family M19) EP560_RS08400 PF04055 Radical SAM superfamily EP560_RS08400 PF13186 Iron-sulfur cluster-binding domain EP560_RS08405 PF05402 Coenzyme PQQ synthesis protein D (PqqD) EP560_RS08410 PF03070 TENA/THI-4/PQQC family EP560_RS08415 PF12706 Beta-lactamase superfamily domain EP560_RS08420 PF08042 PqqA family EP560_RS08425 PF02503 Polyphosphate kinase middle domain EP560_RS08425 PF13090 Polyphosphate kinase C-terminal domain 2 EP560_RS08425 PF17941 Polyphosphate kinase C-terminal domain 1 EP560_RS08425 PF13089 Polyphosphate kinase N-terminal domain EP560_RS08430 PF00149 Calcineurin-like phosphoesterase EP560_RS08440 PF00550 Phosphopantetheine attachment site EP560_RS08440 PF00857 Isochorismatase family EP560_RS08445 PF00106 short chain dehydrogenase EP560_RS08450 PF00005 ABC transporter EP560_RS08450 PF03459 TOBE domain EP560_RS08455 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS08465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS08465 PF03459 TOBE domain EP560_RS08470 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_RS08470 PF00355 Rieske [2Fe-2S] domain EP560_RS08475 PF00866 Ring hydroxylating beta subunit EP560_RS08480 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS08480 PF00970 Oxidoreductase FAD-binding domain EP560_RS08480 PF00175 Oxidoreductase NAD-binding domain EP560_RS08495 PF01613 Flavin reductase like domain EP560_RS08510 PF01738 Dienelactone hydrolase family EP560_RS08515 PF07690 Major Facilitator Superfamily EP560_RS08520 PF06719 AraC-type transcriptional regulator N-terminus EP560_RS08520 PF12833 Helix-turn-helix domain EP560_RS08540 PF03466 LysR substrate binding domain EP560_RS08540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS08545 PF01144 Coenzyme A transferase EP560_RS08550 PF01144 Coenzyme A transferase EP560_RS08555 PF02667 Short chain fatty acid transporter EP560_RS08560 PF02803 Thiolase, C-terminal domain EP560_RS08560 PF00108 Thiolase, N-terminal domain EP560_RS08565 PF03466 LysR substrate binding domain EP560_RS08565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS08570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS08570 PF03466 LysR substrate binding domain EP560_RS08585 PF10415 Fumarase C C-terminus EP560_RS08585 PF00206 Lyase EP560_RS08590 PF00593 TonB dependent receptor EP560_RS08590 PF07715 TonB-dependent Receptor Plug Domain EP560_RS08595 PF00083 Sugar (and other) transporter EP560_RS08610 PF00005 ABC transporter EP560_RS08615 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS08620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP560_RS08635 PF07702 UTRA domain EP560_RS08635 PF00392 Bacterial regulatory proteins, gntR family EP560_RS08645 PF02525 Flavodoxin-like fold EP560_RS08650 PF01638 HxlR-like helix-turn-helix EP560_RS08655 PF06445 GyrI-like small molecule binding domain EP560_RS08655 PF12833 Helix-turn-helix domain EP560_RS08670 PF01925 Sulfite exporter TauE/SafE EP560_RS08675 PF04273 Putative phosphatase (DUF442) EP560_RS08675 PF00753 Metallo-beta-lactamase superfamily EP560_RS08680 PF04273 Putative phosphatase (DUF442) EP560_RS08680 PF00753 Metallo-beta-lactamase superfamily EP560_RS08685 PF02954 Bacterial regulatory protein, Fis family EP560_RS08685 PF00072 Response regulator receiver domain EP560_RS08685 PF00158 Sigma-54 interaction domain EP560_RS08690 PF01062 Bestrophin, RFP-TM, chloride channel EP560_RS08695 PF00107 Zinc-binding dehydrogenase EP560_RS08695 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS08700 PF00106 short chain dehydrogenase EP560_RS08705 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS08705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_RS08710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP560_RS08710 PF00364 Biotin-requiring enzyme EP560_RS08710 PF02817 e3 binding domain EP560_RS08715 PF02780 Transketolase, C-terminal domain EP560_RS08715 PF02779 Transketolase, pyrimidine binding domain EP560_RS08720 PF00676 Dehydrogenase E1 component EP560_RS08725 PF04055 Radical SAM superfamily EP560_RS08745 PF01264 Chorismate synthase EP560_RS08750 PF05175 Methyltransferase small domain EP560_RS08755 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS08765 PF01434 Peptidase family M41 EP560_RS08765 PF17862 AAA+ lid domain EP560_RS08765 PF00004 ATPase family associated with various cellular activities (AAA) EP560_RS08775 PF05166 YcgL domain EP560_RS08795 PF01612 3'-5' exonuclease EP560_RS08795 PF00570 HRDC domain EP560_RS08800 PF02132 RecR protein EP560_RS08800 PF13662 Toprim domain EP560_RS08805 PF02575 YbaB/EbfC DNA-binding family EP560_RS08815 PF01053 Cys/Met metabolism PLP-dependent enzyme EP560_RS08820 PF00561 alpha/beta hydrolase fold EP560_RS08825 PF08241 Methyltransferase domain EP560_RS08855 PF01230 HIT domain EP560_RS08890 PF00005 ABC transporter EP560_RS08895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_RS08915 PF13007 Transposase C of IS166 homeodomain EP560_RS08915 PF13005 zinc-finger binding domain of transposase IS66 EP560_RS08915 PF13817 IS66 C-terminal element EP560_RS08915 PF03050 Transposase IS66 family EP560_RS08925 PF02684 Lipid-A-disaccharide synthetase EP560_RS08930 PF00593 TonB dependent receptor EP560_RS08930 PF07715 TonB-dependent Receptor Plug Domain EP560_RS08950 PF01925 Sulfite exporter TauE/SafE EP560_RS08955 PF00793 DAHP synthetase I family EP560_RS08960 PF02654 Cobalamin-5-phosphate synthase EP560_RS08975 PF02277 Phosphoribosyltransferase EP560_RS08980 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EP560_RS09020 PF07715 TonB-dependent Receptor Plug Domain EP560_RS09020 PF00593 TonB dependent receptor EP560_RS09035 PF06276 Ferric iron reductase FhuF-like transporter EP560_RS09035 PF04183 IucA / IucC family EP560_RS09040 PF06276 Ferric iron reductase FhuF-like transporter EP560_RS09040 PF04183 IucA / IucC family EP560_RS09045 PF07690 Major Facilitator Superfamily EP560_RS09050 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP560_RS09055 PF06276 Ferric iron reductase FhuF-like transporter EP560_RS09055 PF04183 IucA / IucC family EP560_RS09060 PF04073 Aminoacyl-tRNA editing domain EP560_RS09070 PF03109 ABC1 family EP560_RS09075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS09075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS09075 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS09080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS09080 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS09080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS09085 PF00487 Fatty acid desaturase EP560_RS09090 PF12852 Cupin EP560_RS09090 PF12833 Helix-turn-helix domain EP560_RS09095 PF00639 PPIC-type PPIASE domain EP560_RS09095 PF09312 SurA N-terminal domain EP560_RS09100 PF00216 Bacterial DNA-binding protein EP560_RS09115 PF02082 Transcriptional regulator EP560_RS09120 PF00266 Aminotransferase class-V EP560_RS09125 PF01592 NifU-like N terminal domain EP560_RS09130 PF01521 Iron-sulphur cluster biosynthesis EP560_RS09135 PF07743 HSCB C-terminal oligomerisation domain EP560_RS09135 PF00226 DnaJ domain EP560_RS09140 PF00012 Hsp70 protein EP560_RS09145 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS09150 PF00211 Adenylate and Guanylate cyclase catalytic domain EP560_RS09160 PF00271 Helicase conserved C-terminal domain EP560_RS09160 PF02559 CarD-like/TRCF domain EP560_RS09160 PF17757 UvrB interaction domain EP560_RS09160 PF03461 TRCF domain EP560_RS09160 PF00270 DEAD/DEAH box helicase EP560_RS09180 PF03737 Aldolase/RraA EP560_RS09185 PF13460 NAD(P)H-binding EP560_RS09190 PF01649 Ribosomal protein S20 EP560_RS09200 PF00459 Inositol monophosphatase family EP560_RS09215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP560_RS09215 PF00005 ABC transporter EP560_RS09220 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS09225 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS09230 PF01432 Peptidase family M3 EP560_RS09250 PF00593 TonB dependent receptor EP560_RS09250 PF07715 TonB-dependent Receptor Plug Domain EP560_RS09260 PF01618 MotA/TolQ/ExbB proton channel family EP560_RS09265 PF02472 Biopolymer transport protein ExbD/TolR EP560_RS09270 PF02472 Biopolymer transport protein ExbD/TolR EP560_RS09280 PF01274 Malate synthase EP560_RS09335 PF10145 Phage-related minor tail protein EP560_RS09335 PF01464 Transglycosylase SLT domain EP560_RS09335 PF01551 Peptidase family M23 EP560_RS09390 PF04860 Phage portal protein EP560_RS09465 PF00772 DnaB-like helicase N terminal domain EP560_RS09465 PF03796 DnaB-like helicase C terminal domain EP560_RS09530 PF00589 Phage integrase family EP560_RS09530 PF02899 Phage integrase, N-terminal SAM-like domain EP560_RS09535 PF03969 AFG1-like ATPase EP560_RS09545 PF00743 Flavin-binding monooxygenase-like EP560_RS09555 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EP560_RS09565 PF00216 Bacterial DNA-binding protein EP560_RS09570 PF00575 S1 RNA binding domain EP560_RS09575 PF02224 Cytidylate kinase EP560_RS09585 PF14437 MafB19-like deaminase EP560_RS09595 PF03167 Uracil DNA glycosylase superfamily EP560_RS09605 PF03934 Type II secretion system (T2SS), protein K EP560_RS09610 PF07963 Prokaryotic N-terminal methylation motif EP560_RS09610 PF11612 Type II secretion system (T2SS), protein J EP560_RS09615 PF02501 Type II secretion system (T2SS), protein I EP560_RS09615 PF07963 Prokaryotic N-terminal methylation motif EP560_RS09630 PF01026 TatD related DNase EP560_RS09640 PF09115 DNA polymerase III, delta subunit, C terminal EP560_RS09645 PF02348 Cytidylyltransferase EP560_RS09650 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EP560_RS09655 PF00664 ABC transporter transmembrane region EP560_RS09655 PF00005 ABC transporter EP560_RS09665 PF01618 MotA/TolQ/ExbB proton channel family EP560_RS09670 PF02195 ParB-like nuclease domain EP560_RS09670 PF17762 HTH domain found in ParB protein EP560_RS09675 PF13614 AAA domain EP560_RS09680 PF02527 rRNA small subunit methyltransferase G EP560_RS09685 PF00483 Nucleotidyl transferase EP560_RS09690 PF01636 Phosphotransferase enzyme family EP560_RS09695 PF03968 OstA-like protein EP560_RS09695 PF04453 LPS transport system D EP560_RS09700 PF09312 SurA N-terminal domain EP560_RS09700 PF00639 PPIC-type PPIASE domain EP560_RS09705 PF01116 Fructose-bisphosphate aldolase class-II EP560_RS09715 PF00162 Phosphoglycerate kinase EP560_RS09725 PF02545 Maf-like protein EP560_RS09730 PF08007 Cupin superfamily protein EP560_RS09745 PF00375 Sodium:dicarboxylate symporter family EP560_RS09750 PF06912 Protein of unknown function (DUF1275) EP560_RS09755 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) EP560_RS09760 PF00005 ABC transporter EP560_RS09760 PF00664 ABC transporter transmembrane region EP560_RS09770 PF12833 Helix-turn-helix domain EP560_RS09770 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EP560_RS09775 PF01597 Glycine cleavage H-protein EP560_RS09780 PF02146 Sir2 family EP560_RS09785 PF00474 Sodium:solute symporter family EP560_RS09790 PF01037 Lrp/AsnC ligand binding domain EP560_RS09795 PF14850 DNA-binding domain of Proline dehydrogenase EP560_RS09795 PF01619 Proline dehydrogenase EP560_RS09795 PF00171 Aldehyde dehydrogenase family EP560_RS09795 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EP560_RS09800 PF04229 GrpB protein EP560_RS09805 PF05958 tRNA (Uracil-5-)-methyltransferase EP560_RS09815 PF09992 Phosphodiester glycosidase EP560_RS09825 PF04264 YceI-like domain EP560_RS09835 PF02779 Transketolase, pyrimidine binding domain EP560_RS09835 PF02780 Transketolase, C-terminal domain EP560_RS09835 PF00456 Transketolase, thiamine diphosphate binding domain EP560_RS09840 PF00438 S-adenosylmethionine synthetase, N-terminal domain EP560_RS09840 PF02773 S-adenosylmethionine synthetase, C-terminal domain EP560_RS09840 PF02772 S-adenosylmethionine synthetase, central domain EP560_RS09865 PF00905 Penicillin binding protein transpeptidase domain EP560_RS09880 PF02075 Crossover junction endodeoxyribonuclease RuvC EP560_RS09885 PF03853 YjeF-related protein N-terminus EP560_RS09885 PF01256 Carbohydrate kinase EP560_RS09890 PF08331 Domain of unknown function (DUF1730) EP560_RS09895 PF04055 Radical SAM superfamily EP560_RS09895 PF06968 Biotin and Thiamin Synthesis associated domain EP560_RS09910 PF16970 Type-1 fimbrial protein, A EP560_RS09915 PF02753 Pili assembly chaperone PapD, C-terminal domain EP560_RS09915 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain EP560_RS09920 PF00577 Outer membrane usher protein EP560_RS09920 PF13953 PapC C-terminal domain EP560_RS09920 PF13954 PapC N-terminal domain EP560_RS09950 PF00892 EamA-like transporter family EP560_RS09960 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP560_RS09970 PF03466 LysR substrate binding domain EP560_RS09970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS09980 PF13737 Transposase DDE domain EP560_RS10000 PF00440 Bacterial regulatory proteins, tetR family EP560_RS10010 PF01709 Transcriptional regulator EP560_RS10015 PF01037 Lrp/AsnC ligand binding domain EP560_RS10025 PF00005 ABC transporter EP560_RS10030 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS10035 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS10050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS10050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS10060 PF00296 Luciferase-like monooxygenase EP560_RS10065 PF03180 NLPA lipoprotein EP560_RS10070 PF03180 NLPA lipoprotein EP560_RS10075 PF00005 ABC transporter EP560_RS10075 PF09383 NIL domain EP560_RS10080 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS10085 PF06071 Protein of unknown function (DUF933) EP560_RS10085 PF01926 50S ribosome-binding GTPase EP560_RS10110 PF03591 AzlC protein EP560_RS10115 PF05437 Branched-chain amino acid transport protein (AzlD) EP560_RS10125 PF02222 ATP-grasp domain EP560_RS10130 PF01966 HD domain EP560_RS10130 PF01909 Nucleotidyltransferase domain EP560_RS10130 PF08335 GlnD PII-uridylyltransferase EP560_RS10135 PF00155 Aminotransferase class I and II EP560_RS10145 PF12852 Cupin EP560_RS10145 PF12833 Helix-turn-helix domain EP560_RS10150 PF00255 Glutathione peroxidase EP560_RS10155 PF01641 SelR domain EP560_RS10160 PF00155 Aminotransferase class I and II EP560_RS10165 PF13737 Transposase DDE domain EP560_RS10170 PF00375 Sodium:dicarboxylate symporter family EP560_RS10175 PF17763 Glutaminase/Asparaginase C-terminal domain EP560_RS10175 PF00710 Asparaginase, N-terminal EP560_RS10180 PF01336 OB-fold nucleic acid binding domain EP560_RS10180 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP560_RS10180 PF02811 PHP domain EP560_RS10180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP560_RS10180 PF14579 Helix-hairpin-helix motif EP560_RS10185 PF00588 SpoU rRNA Methylase family EP560_RS10190 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS10205 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS10205 PF13192 Thioredoxin domain EP560_RS10220 PF03466 LysR substrate binding domain EP560_RS10220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10225 PF01758 Sodium Bile acid symporter family EP560_RS10230 PF01022 Bacterial regulatory protein, arsR family EP560_RS10235 PF03960 ArsC family EP560_RS10245 PF13382 Adenine deaminase C-terminal domain EP560_RS10245 PF01979 Amidohydrolase family EP560_RS10255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10255 PF03466 LysR substrate binding domain EP560_RS10265 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EP560_RS10270 PF01177 Asp/Glu/Hydantoin racemase EP560_RS10275 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EP560_RS10280 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS10285 PF00005 ABC transporter EP560_RS10290 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EP560_RS10310 PF00083 Sugar (and other) transporter EP560_RS10315 PF00296 Luciferase-like monooxygenase EP560_RS10320 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS10320 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS10320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS10335 PF01654 Cytochrome bd terminal oxidase subunit I EP560_RS10340 PF02322 Cytochrome bd terminal oxidase subunit II EP560_RS10350 PF00392 Bacterial regulatory proteins, gntR family EP560_RS10350 PF00155 Aminotransferase class I and II EP560_RS10355 PF03466 LysR substrate binding domain EP560_RS10355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10370 PF00698 Acyl transferase domain EP560_RS10375 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG EP560_RS10385 PF01039 Carboxyl transferase domain EP560_RS10390 PF06857 Malonate decarboxylase delta subunit (MdcD) EP560_RS10395 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase EP560_RS10400 PF16957 Malonate decarboxylase, alpha subunit, transporter EP560_RS10405 PF07690 Major Facilitator Superfamily EP560_RS10420 PF00392 Bacterial regulatory proteins, gntR family EP560_RS10420 PF00155 Aminotransferase class I and II EP560_RS10425 PF04172 LrgB-like family EP560_RS10430 PF03788 LrgA family EP560_RS10435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10435 PF03466 LysR substrate binding domain EP560_RS10440 PF02798 Glutathione S-transferase, N-terminal domain EP560_RS10440 PF14834 Glutathione S-transferase, C-terminal domain EP560_RS10445 PF02798 Glutathione S-transferase, N-terminal domain EP560_RS10450 PF03466 LysR substrate binding domain EP560_RS10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10460 PF00581 Rhodanese-like domain EP560_RS10465 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS10475 PF00266 Aminotransferase class-V EP560_RS10485 PF01810 LysE type translocator EP560_RS10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10490 PF03466 LysR substrate binding domain EP560_RS10500 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_RS10505 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_RS10510 PF00005 ABC transporter EP560_RS10515 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS10520 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS10535 PF00072 Response regulator receiver domain EP560_RS10540 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS10540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS10540 PF09308 LuxQ, periplasmic EP560_RS10540 PF00072 Response regulator receiver domain EP560_RS10550 PF13404 AsnC-type helix-turn-helix domain EP560_RS10550 PF01037 Lrp/AsnC ligand binding domain EP560_RS10560 PF00717 Peptidase S24-like EP560_RS10585 PF18011 C-terminal domain found in long catalases EP560_RS10585 PF06628 Catalase-related immune-responsive EP560_RS10585 PF00199 Catalase EP560_RS10595 PF02464 Competence-damaged protein EP560_RS10595 PF00994 Probable molybdopterin binding domain EP560_RS10595 PF18146 Damage-inducible protein CinA KH domain EP560_RS10625 PF03466 LysR substrate binding domain EP560_RS10625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10645 PF00501 AMP-binding enzyme EP560_RS10645 PF13193 AMP-binding enzyme C-terminal domain EP560_RS10650 PF00440 Bacterial regulatory proteins, tetR family EP560_RS10655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS10655 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS10655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS10660 PF01039 Carboxyl transferase domain EP560_RS10665 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS10670 PF00289 Biotin carboxylase, N-terminal domain EP560_RS10670 PF02785 Biotin carboxylase C-terminal domain EP560_RS10670 PF00364 Biotin-requiring enzyme EP560_RS10670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_RS10670 PF18140 Propionyl-coenzyme A carboxylase BT domain EP560_RS10675 PF00682 HMGL-like EP560_RS10680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS10680 PF03466 LysR substrate binding domain EP560_RS10695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS10695 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_RS10695 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS10695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS10705 PF07690 Major Facilitator Superfamily EP560_RS10715 PF01144 Coenzyme A transferase EP560_RS10720 PF01144 Coenzyme A transferase EP560_RS10725 PF07690 Major Facilitator Superfamily EP560_RS10730 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS10730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS10730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS10735 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS10745 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP560_RS10745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_RS10745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_RS10750 PF00108 Thiolase, N-terminal domain EP560_RS10750 PF02803 Thiolase, C-terminal domain EP560_RS10755 PF09339 IclR helix-turn-helix domain EP560_RS10760 PF07690 Major Facilitator Superfamily EP560_RS10765 PF03060 Nitronate monooxygenase EP560_RS10770 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS10775 PF09339 IclR helix-turn-helix domain EP560_RS10780 PF02515 CoA-transferase family III EP560_RS10785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS10785 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS10785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS10790 PF07690 Major Facilitator Superfamily EP560_RS10795 PF13419 Haloacid dehalogenase-like hydrolase EP560_RS10800 PF00266 Aminotransferase class-V EP560_RS10805 PF01266 FAD dependent oxidoreductase EP560_RS10810 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS10815 PF00005 ABC transporter EP560_RS10815 PF08402 TOBE domain EP560_RS10825 PF07702 UTRA domain EP560_RS10825 PF00392 Bacterial regulatory proteins, gntR family EP560_RS10830 PF01494 FAD binding domain EP560_RS10835 PF01614 Bacterial transcriptional regulator EP560_RS10835 PF09339 IclR helix-turn-helix domain EP560_RS10845 PF13610 DDE domain EP560_RS10855 PF01695 IstB-like ATP binding protein EP560_RS10870 PF00809 Pterin binding enzyme EP560_RS10875 PF00893 Small Multidrug Resistance protein EP560_RS10880 PF13427 Domain of unknown function (DUF4111) EP560_RS10885 PF10706 Aminoglycoside-2''-adenylyltransferase EP560_RS10890 PF13495 Phage integrase, N-terminal SAM-like domain EP560_RS10890 PF00589 Phage integrase family EP560_RS10900 PF02796 Helix-turn-helix domain of resolvase EP560_RS10900 PF00239 Resolvase, N terminal domain EP560_RS10905 PF13610 DDE domain EP560_RS10915 PF06719 AraC-type transcriptional regulator N-terminus EP560_RS10915 PF12833 Helix-turn-helix domain EP560_RS10925 PF00313 'Cold-shock' DNA-binding domain EP560_RS10965 PF02151 UvrB/uvrC motif EP560_RS10965 PF17757 UvrB interaction domain EP560_RS10965 PF00271 Helicase conserved C-terminal domain EP560_RS10965 PF12344 Ultra-violet resistance protein B EP560_RS10965 PF04851 Type III restriction enzyme, res subunit EP560_RS10975 PF03061 Thioesterase superfamily EP560_RS10980 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS10985 PF08223 PaaX-like protein C-terminal domain EP560_RS10985 PF07848 PaaX-like protein EP560_RS10990 PF14535 AMP-binding enzyme C-terminal domain EP560_RS10990 PF00501 AMP-binding enzyme EP560_RS10995 PF02803 Thiolase, C-terminal domain EP560_RS10995 PF00108 Thiolase, N-terminal domain EP560_RS11000 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_RS11000 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain EP560_RS11000 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_RS11005 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS11010 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS11015 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS11015 PF00175 Oxidoreductase NAD-binding domain EP560_RS11015 PF00970 Oxidoreductase FAD-binding domain EP560_RS11020 PF01883 Iron-sulfur cluster assembly protein EP560_RS11025 PF05138 Phenylacetic acid catabolic protein EP560_RS11030 PF06243 Phenylacetic acid degradation B EP560_RS11035 PF05138 Phenylacetic acid catabolic protein EP560_RS11040 PF01575 MaoC like domain EP560_RS11040 PF00171 Aldehyde dehydrogenase family EP560_RS11045 PF03315 Serine dehydratase beta chain EP560_RS11045 PF03313 Serine dehydratase alpha chain EP560_RS11050 PF13520 Amino acid permease EP560_RS11055 PF00171 Aldehyde dehydrogenase family EP560_RS11060 PF00083 Sugar (and other) transporter EP560_RS11070 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS11070 PF04324 BFD-like [2Fe-2S] binding domain EP560_RS11080 PF01266 FAD dependent oxidoreductase EP560_RS11085 PF05544 Proline racemase EP560_RS11090 PF00392 Bacterial regulatory proteins, gntR family EP560_RS11100 PF00701 Dihydrodipicolinate synthetase family EP560_RS11115 PF09278 MerR, DNA binding EP560_RS11115 PF00376 MerR family regulatory protein EP560_RS11125 PF02677 Epoxyqueuosine reductase QueH EP560_RS11140 PF07690 Major Facilitator Superfamily EP560_RS11145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EP560_RS11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS11155 PF03466 LysR substrate binding domain EP560_RS11175 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE EP560_RS11180 PF06812 ImpA, N-terminal, type VI secretion system EP560_RS11185 PF00004 ATPase family associated with various cellular activities (AAA) EP560_RS11185 PF07724 AAA domain (Cdc48 subfamily) EP560_RS11185 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_RS11185 PF17871 AAA lid domain EP560_RS11195 PF01389 OmpA-like transmembrane domain EP560_RS11195 PF00691 OmpA family EP560_RS11205 PF06761 Intracellular multiplication and human macrophage-killing EP560_RS11205 PF14331 ImcF-related N-terminal domain EP560_RS11205 PF06744 Type VI secretion protein IcmF C-terminal EP560_RS11225 PF05947 Type VI secretion system, TssF EP560_RS11240 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath EP560_RS11270 PF00005 ABC transporter EP560_RS11275 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_RS11280 PF01425 Amidase EP560_RS11285 PF08753 NikR C terminal nickel binding domain EP560_RS11285 PF01402 Ribbon-helix-helix protein, copG family EP560_RS11305 PF02525 Flavodoxin-like fold EP560_RS11310 PF00289 Biotin carboxylase, N-terminal domain EP560_RS11310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_RS11310 PF02785 Biotin carboxylase C-terminal domain EP560_RS11335 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS11335 PF00107 Zinc-binding dehydrogenase EP560_RS11335 PF13823 Alcohol dehydrogenase GroES-associated EP560_RS11345 PF00440 Bacterial regulatory proteins, tetR family EP560_RS11370 PF00654 Voltage gated chloride channel EP560_RS11375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_RS11375 PF00364 Biotin-requiring enzyme EP560_RS11375 PF00289 Biotin carboxylase, N-terminal domain EP560_RS11375 PF02785 Biotin carboxylase C-terminal domain EP560_RS11385 PF07286 Protein of unknown function (DUF1445) EP560_RS11390 PF03746 LamB/YcsF family EP560_RS11395 PF01566 Natural resistance-associated macrophage protein EP560_RS11400 PF03466 LysR substrate binding domain EP560_RS11400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS11415 PF05593 RHS Repeat EP560_RS11415 PF03527 RHS protein EP560_RS11420 PF13296 Putative type VI secretion system Rhs element Vgr EP560_RS11420 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) EP560_RS11420 PF04717 Type VI secretion system, phage-baseplate injector EP560_RS11425 PF03050 Transposase IS66 family EP560_RS11425 PF13817 IS66 C-terminal element EP560_RS11425 PF13005 zinc-finger binding domain of transposase IS66 EP560_RS11425 PF13007 Transposase C of IS166 homeodomain EP560_RS11445 PF13419 Haloacid dehalogenase-like hydrolase EP560_RS11465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_RS11465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_RS11485 PF07690 Major Facilitator Superfamily EP560_RS11500 PF03279 Bacterial lipid A biosynthesis acyltransferase EP560_RS11505 PF00563 EAL domain EP560_RS11505 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS11505 PF03707 Bacterial signalling protein N terminal repeat EP560_RS11510 PF00892 EamA-like transporter family EP560_RS11515 PF01037 Lrp/AsnC ligand binding domain EP560_RS11520 PF05188 MutS domain II EP560_RS11520 PF05192 MutS domain III EP560_RS11520 PF05190 MutS family domain IV EP560_RS11520 PF00488 MutS domain V EP560_RS11520 PF01624 MutS domain I EP560_RS11530 PF11953 Domain of unknown function (DUF3470) EP560_RS11530 PF00037 4Fe-4S binding domain EP560_RS11540 PF01596 O-methyltransferase EP560_RS11550 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS11555 PF01205 Uncharacterized protein family UPF0029 EP560_RS11565 PF03412 Peptidase C39 family EP560_RS11565 PF00664 ABC transporter transmembrane region EP560_RS11565 PF00005 ABC transporter EP560_RS11570 PF02321 Outer membrane efflux protein EP560_RS11575 PF00005 ABC transporter EP560_RS11575 PF12399 Branched-chain amino acid ATP-binding cassette transporter EP560_RS11580 PF03968 OstA-like protein EP560_RS11595 PF01380 SIS domain EP560_RS11595 PF00571 CBS domain EP560_RS11600 PF09190 DALR domain EP560_RS11600 PF01406 tRNA synthetases class I (C) catalytic domain EP560_RS11620 PF13936 Helix-turn-helix domain EP560_RS11620 PF00665 Integrase core domain EP560_RS11625 PF01636 Phosphotransferase enzyme family EP560_RS11630 PF13936 Helix-turn-helix domain EP560_RS11630 PF00665 Integrase core domain EP560_RS11645 PF01638 HxlR-like helix-turn-helix EP560_RS11650 PF07690 Major Facilitator Superfamily EP560_RS11680 PF03807 NADP oxidoreductase coenzyme F420-dependent EP560_RS11680 PF14748 Pyrroline-5-carboxylate reductase dimerisation EP560_RS11690 PF00313 'Cold-shock' DNA-binding domain EP560_RS11695 PF01810 LysE type translocator EP560_RS11730 PF02601 Exonuclease VII, large subunit EP560_RS11730 PF13742 OB-fold nucleic acid binding domain EP560_RS11760 PF13737 Transposase DDE domain EP560_RS11780 PF00376 MerR family regulatory protein EP560_RS11780 PF09278 MerR, DNA binding EP560_RS11785 PF00403 Heavy-metal-associated domain EP560_RS11790 PF00403 Heavy-metal-associated domain EP560_RS11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS11795 PF03466 LysR substrate binding domain EP560_RS11800 PF00355 Rieske [2Fe-2S] domain EP560_RS11800 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_RS11805 PF00866 Ring hydroxylating beta subunit EP560_RS11810 PF00970 Oxidoreductase FAD-binding domain EP560_RS11810 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS11810 PF00175 Oxidoreductase NAD-binding domain EP560_RS11815 PF00106 short chain dehydrogenase EP560_RS11820 PF03594 Benzoate membrane transport protein EP560_RS11825 PF07690 Major Facilitator Superfamily EP560_RS11835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EP560_RS11835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EP560_RS11840 PF00271 Helicase conserved C-terminal domain EP560_RS11840 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EP560_RS11840 PF04408 Helicase associated domain (HA2) EP560_RS11840 PF11898 Domain of unknown function (DUF3418) EP560_RS11840 PF00270 DEAD/DEAH box helicase EP560_RS11845 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP560_RS11845 PF00578 AhpC/TSA family EP560_RS11865 PF13192 Thioredoxin domain EP560_RS11865 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS11875 PF00043 Glutathione S-transferase, C-terminal domain EP560_RS11875 PF02798 Glutathione S-transferase, N-terminal domain EP560_RS11885 PF02390 Putative methyltransferase EP560_RS11890 PF00043 Glutathione S-transferase, C-terminal domain EP560_RS11890 PF13417 Glutathione S-transferase, N-terminal domain EP560_RS11900 PF00691 OmpA family EP560_RS11900 PF13488 Glycine zipper EP560_RS11905 PF01979 Amidohydrolase family EP560_RS11910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EP560_RS11910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EP560_RS11920 PF01170 Putative RNA methylase family UPF0020 EP560_RS11920 PF02926 THUMP domain EP560_RS11920 PF10672 S-adenosylmethionine-dependent methyltransferase EP560_RS11935 PF07724 AAA domain (Cdc48 subfamily) EP560_RS11935 PF02861 Clp amino terminal domain, pathogenicity island component EP560_RS11935 PF17871 AAA lid domain EP560_RS11935 PF00004 ATPase family associated with various cellular activities (AAA) EP560_RS11935 PF10431 C-terminal, D2-small domain, of ClpB protein EP560_RS11950 PF02566 OsmC-like protein EP560_RS11955 PF13545 Crp-like helix-turn-helix domain EP560_RS11955 PF00027 Cyclic nucleotide-binding domain EP560_RS11960 PF00248 Aldo/keto reductase family EP560_RS11975 PF00709 Adenylosuccinate synthetase EP560_RS11980 PF13393 Histidyl-tRNA synthetase EP560_RS11985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP560_RS11985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP560_RS11990 PF02272 DHHA1 domain EP560_RS11990 PF01411 tRNA synthetases class II (A) EP560_RS11990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EP560_RS11995 PF01842 ACT domain EP560_RS11995 PF13840 ACT domain EP560_RS11995 PF00696 Amino acid kinase family EP560_RS12005 PF13610 DDE domain EP560_RS12015 PF13296 Putative type VI secretion system Rhs element Vgr EP560_RS12015 PF04717 Type VI secretion system, phage-baseplate injector EP560_RS12015 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) EP560_RS12030 PF03180 NLPA lipoprotein EP560_RS12035 PF05987 Bacterial protein of unknown function (DUF898) EP560_RS12050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_RS12050 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS12055 PF00764 Arginosuccinate synthase EP560_RS12060 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS12060 PF01590 GAF domain EP560_RS12060 PF00563 EAL domain EP560_RS12060 PF00360 Phytochrome region EP560_RS12065 PF01979 Amidohydrolase family EP560_RS12070 PF00929 Exonuclease EP560_RS12080 PF00593 TonB dependent receptor EP560_RS12080 PF07715 TonB-dependent Receptor Plug Domain EP560_RS12085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_RS12085 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS12090 PF00005 ABC transporter EP560_RS12090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EP560_RS12095 PF12911 N-terminal TM domain of oligopeptide transport permease C EP560_RS12095 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS12100 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS12105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EP560_RS12110 PF01476 LysM domain EP560_RS12110 PF01476 LysM domain EP560_RS12110 PF01464 Transglycosylase SLT domain EP560_RS12110 PF01464 Transglycosylase SLT domain EP560_RS12115 PF00929 Exonuclease EP560_RS12125 PF09297 NADH pyrophosphatase zinc ribbon domain EP560_RS12125 PF00293 NUDIX domain EP560_RS12135 PF04972 BON domain EP560_RS12140 PF02021 Uncharacterised protein family UPF0102 EP560_RS12145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP560_RS12155 PF03466 LysR substrate binding domain EP560_RS12155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS12160 PF01810 LysE type translocator EP560_RS12170 PF13411 MerR HTH family regulatory protein EP560_RS12180 PF01494 FAD binding domain EP560_RS12185 PF01494 FAD binding domain EP560_RS12190 PF05195 Aminopeptidase P, N-terminal domain EP560_RS12190 PF00557 Metallopeptidase family M24 EP560_RS12240 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system EP560_RS12535 PF00117 Glutamine amidotransferase class-I EP560_RS12540 PF11838 ERAP1-like C-terminal domain EP560_RS12540 PF01433 Peptidase family M1 domain EP560_RS12545 PF07715 TonB-dependent Receptor Plug Domain EP560_RS12545 PF00593 TonB dependent receptor EP560_RS12550 PF02885 Glycosyl transferase family, helical bundle domain EP560_RS12550 PF00591 Glycosyl transferase family, a/b domain EP560_RS12555 PF00218 Indole-3-glycerol phosphate synthase EP560_RS12570 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EP560_RS12570 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EP560_RS12575 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS12575 PF01799 [2Fe-2S] binding domain EP560_RS12580 PF01227 GTP cyclohydrolase I EP560_RS12590 PF00144 Beta-lactamase EP560_RS12605 PF05675 Protein of unknown function (DUF817) EP560_RS12610 PF01208 Uroporphyrinogen decarboxylase (URO-D) EP560_RS12620 PF00425 chorismate binding enzyme EP560_RS12630 PF00975 Thioesterase domain EP560_RS12635 PF00005 ABC transporter EP560_RS12640 PF00005 ABC transporter EP560_RS12650 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP560_RS12655 PF00550 Phosphopantetheine attachment site EP560_RS12655 PF00857 Isochorismatase family EP560_RS12660 PF13193 AMP-binding enzyme C-terminal domain EP560_RS12660 PF00501 AMP-binding enzyme EP560_RS12665 PF00501 AMP-binding enzyme EP560_RS12665 PF00668 Condensation domain EP560_RS12665 PF00550 Phosphopantetheine attachment site EP560_RS12670 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) EP560_RS12685 PF07715 TonB-dependent Receptor Plug Domain EP560_RS12685 PF00593 TonB dependent receptor EP560_RS12690 PF01497 Periplasmic binding protein EP560_RS12695 PF00005 ABC transporter EP560_RS12700 PF01032 FecCD transport family EP560_RS12705 PF01032 FecCD transport family EP560_RS12710 PF00668 Condensation domain EP560_RS12710 PF00975 Thioesterase domain EP560_RS12710 PF13193 AMP-binding enzyme C-terminal domain EP560_RS12710 PF00501 AMP-binding enzyme EP560_RS12710 PF00550 Phosphopantetheine attachment site EP560_RS12715 PF00501 AMP-binding enzyme EP560_RS12715 PF13193 AMP-binding enzyme C-terminal domain EP560_RS12715 PF00668 Condensation domain EP560_RS12715 PF00550 Phosphopantetheine attachment site EP560_RS12725 PF13309 HTH domain EP560_RS12725 PF08348 YheO-like PAS domain EP560_RS12735 PF17954 Quercetinase C-terminal cupin domain EP560_RS12735 PF02678 Pirin EP560_RS12755 PF00440 Bacterial regulatory proteins, tetR family EP560_RS12760 PF08990 Erythronolide synthase docking EP560_RS12760 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS12760 PF00550 Phosphopantetheine attachment site EP560_RS12760 PF00698 Acyl transferase domain EP560_RS12760 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_RS12760 PF16197 Ketoacyl-synthetase C-terminal extension EP560_RS12760 PF09277 Erythronolide synthase, docking EP560_RS12760 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_RS12760 PF14765 Polyketide synthase dehydratase EP560_RS12760 PF08659 KR domain EP560_RS12765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EP560_RS12765 PF13378 Enolase C-terminal domain-like EP560_RS12770 PF00083 Sugar (and other) transporter EP560_RS12775 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system EP560_RS12785 PF00892 EamA-like transporter family EP560_RS12805 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP560_RS12805 PF01266 FAD dependent oxidoreductase EP560_RS12810 PF18113 Rubredoxin binding C-terminal domain EP560_RS12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS12815 PF00171 Aldehyde dehydrogenase family EP560_RS12820 PF00355 Rieske [2Fe-2S] domain EP560_RS12820 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EP560_RS12825 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_RS12830 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_RS12835 PF03466 LysR substrate binding domain EP560_RS12835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS12840 PF00324 Amino acid permease EP560_RS12845 PF00171 Aldehyde dehydrogenase family EP560_RS12860 PF13556 PucR C-terminal helix-turn-helix domain EP560_RS12860 PF17853 GGDEF-like domain EP560_RS12860 PF06018 CodY GAF-like domain EP560_RS12895 PF04328 Selenoprotein, putative EP560_RS12900 PF13722 5TM C-terminal transporter carbon starvation CstA EP560_RS12900 PF02554 Carbon starvation protein CstA EP560_RS12905 PF09285 Elongation factor P, C-terminal EP560_RS12905 PF01132 Elongation factor P (EF-P) OB domain EP560_RS12905 PF08207 Elongation factor P (EF-P) KOW-like domain EP560_RS12910 PF04055 Radical SAM superfamily EP560_RS12925 PF01197 Ribosomal protein L31 EP560_RS12930 PF13593 SBF-like CPA transporter family (DUF4137) EP560_RS12935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_RS12940 PF07690 Major Facilitator Superfamily EP560_RS12945 PF05362 Lon protease (S16) C-terminal proteolytic domain EP560_RS12945 PF13654 AAA domain EP560_RS12950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS12950 PF03466 LysR substrate binding domain EP560_RS12955 PF01551 Peptidase family M23 EP560_RS12955 PF01476 LysM domain EP560_RS12960 PF01975 Survival protein SurE EP560_RS12975 PF07943 Penicillin-binding protein 5, C-terminal domain EP560_RS12975 PF00768 D-alanyl-D-alanine carboxypeptidase EP560_RS12980 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS12985 PF13344 Haloacid dehalogenase-like hydrolase EP560_RS12985 PF00293 NUDIX domain EP560_RS12995 PF04356 Protein of unknown function (DUF489) EP560_RS13000 PF00206 Lyase EP560_RS13000 PF08328 Adenylosuccinate lyase C-terminal EP560_RS13015 PF08496 Peptidase family S49 N-terminal EP560_RS13015 PF01343 Peptidase family S49 EP560_RS13020 PF00005 ABC transporter EP560_RS13025 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS13030 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS13035 PF12849 PBP superfamily domain EP560_RS13040 PF00324 Amino acid permease EP560_RS13045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EP560_RS13045 PF00205 Thiamine pyrophosphate enzyme, central domain EP560_RS13045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EP560_RS13050 PF01037 Lrp/AsnC ligand binding domain EP560_RS13055 PF00171 Aldehyde dehydrogenase family EP560_RS13060 PF00282 Pyridoxal-dependent decarboxylase conserved domain EP560_RS13065 PF00202 Aminotransferase class-III EP560_RS13075 PF17754 MftR C-terminal domain EP560_RS13075 PF00440 Bacterial regulatory proteins, tetR family EP560_RS13085 PF00487 Fatty acid desaturase EP560_RS13090 PF00175 Oxidoreductase NAD-binding domain EP560_RS13090 PF00111 2Fe-2S iron-sulfur cluster binding domain EP560_RS13090 PF00970 Oxidoreductase FAD-binding domain EP560_RS13095 PF00440 Bacterial regulatory proteins, tetR family EP560_RS13105 PF00271 Helicase conserved C-terminal domain EP560_RS13105 PF12137 RNA polymerase recycling family C-terminal EP560_RS13105 PF00176 SNF2 family N-terminal domain EP560_RS13105 PF18339 RapA N-terminal Tudor like domain 1 EP560_RS13105 PF18337 RapA N-terminal Tudor like domain EP560_RS13110 PF00849 RNA pseudouridylate synthase EP560_RS13120 PF00202 Aminotransferase class-III EP560_RS13125 PF02581 Thiamine monophosphate synthase EP560_RS13150 PF00675 Insulinase (Peptidase family M16) EP560_RS13150 PF05193 Peptidase M16 inactive domain EP560_RS13155 PF02567 Phenazine biosynthesis-like protein EP560_RS13160 PF00375 Sodium:dicarboxylate symporter family EP560_RS13165 PF03466 LysR substrate binding domain EP560_RS13165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS13170 PF06779 Uncharacterised MFS-type transporter YbfB EP560_RS13190 PF00180 Isocitrate/isopropylmalate dehydrogenase EP560_RS13195 PF00849 RNA pseudouridylate synthase EP560_RS13200 PF03971 Monomeric isocitrate dehydrogenase EP560_RS13210 PF07943 Penicillin-binding protein 5, C-terminal domain EP560_RS13210 PF00768 D-alanyl-D-alanine carboxypeptidase EP560_RS13215 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS13220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_RS13225 PF03441 FAD binding domain of DNA photolyase EP560_RS13225 PF00875 DNA photolyase EP560_RS13255 PF02350 UDP-N-acetylglucosamine 2-epimerase EP560_RS13270 PF03060 Nitronate monooxygenase EP560_RS13275 PF01207 Dihydrouridine synthase (Dus) EP560_RS13280 PF07759 Protein of unknown function (DUF1615) EP560_RS13290 PF01472 PUA domain EP560_RS13290 PF00696 Amino acid kinase family EP560_RS13295 PF01018 GTP1/OBG EP560_RS13295 PF01926 50S ribosome-binding GTPase EP560_RS13320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EP560_RS13320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EP560_RS13325 PF00892 EamA-like transporter family EP560_RS13335 PF02151 UvrB/uvrC motif EP560_RS13335 PF00271 Helicase conserved C-terminal domain EP560_RS13335 PF17757 UvrB interaction domain EP560_RS13335 PF12344 Ultra-violet resistance protein B EP560_RS13335 PF04851 Type III restriction enzyme, res subunit EP560_RS13345 PF17151 Periplasmic sensor domain EP560_RS13345 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS13355 PF00155 Aminotransferase class I and II EP560_RS13385 PF00106 short chain dehydrogenase EP560_RS13390 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EP560_RS13395 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EP560_RS13400 PF11967 Recombination protein O N terminal EP560_RS13400 PF02565 Recombination protein O C terminal EP560_RS13410 PF07650 KH domain EP560_RS13410 PF01926 50S ribosome-binding GTPase EP560_RS13415 PF14622 Ribonuclease-III-like EP560_RS13415 PF00035 Double-stranded RNA binding motif EP560_RS13425 PF10502 Signal peptidase, peptidase S26 EP560_RS13430 PF03144 Elongation factor Tu domain 2 EP560_RS13430 PF06421 GTP-binding protein LepA C-terminus EP560_RS13430 PF00009 Elongation factor Tu GTP binding domain EP560_RS13430 PF00679 Elongation factor G C-terminus EP560_RS13440 PF13180 PDZ domain EP560_RS13445 PF02910 Fumarate reductase flavoprotein C-term EP560_RS13445 PF00890 FAD binding domain EP560_RS13455 PF02223 Thymidylate kinase EP560_RS13460 PF02618 YceG-like family EP560_RS13465 PF01063 Amino-transferase class IV EP560_RS13480 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS13485 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS13490 PF00005 ABC transporter EP560_RS13490 PF12857 TOBE-like domain EP560_RS13495 PF03466 LysR substrate binding domain EP560_RS13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS13505 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EP560_RS13505 PF14602 Hexapeptide repeat of succinyl-transferase EP560_RS13505 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS13515 PF06508 Queuosine biosynthesis protein QueC EP560_RS13530 PF00578 AhpC/TSA family EP560_RS13540 PF01467 Cytidylyltransferase-like EP560_RS13540 PF00293 NUDIX domain EP560_RS13545 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS13550 PF01784 NIF3 (NGG1p interacting factor 3) EP560_RS13555 PF07690 Major Facilitator Superfamily EP560_RS13560 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EP560_RS13560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EP560_RS13560 PF02769 AIR synthase related protein, C-terminal domain EP560_RS13565 PF01966 HD domain EP560_RS13570 PF07499 RuvA, C-terminal domain EP560_RS13570 PF01330 RuvA N terminal domain EP560_RS13575 PF05496 Holliday junction DNA helicase RuvB P-loop domain EP560_RS13575 PF17864 RuvB AAA lid domain EP560_RS13575 PF05491 RuvB C-terminal winged helix domain EP560_RS13580 PF01546 Peptidase family M20/M25/M40 EP560_RS13580 PF07687 Peptidase dimerisation domain EP560_RS13585 PF03061 Thioesterase superfamily EP560_RS13590 PF01618 MotA/TolQ/ExbB proton channel family EP560_RS13595 PF02472 Biopolymer transport protein ExbD/TolR EP560_RS13605 PF04052 TolB amino-terminal domain EP560_RS13605 PF07676 WD40-like Beta Propeller Repeat EP560_RS13610 PF00691 OmpA family EP560_RS13620 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EP560_RS13625 PF08032 RNA 2'-O ribose methyltransferase substrate binding EP560_RS13625 PF00588 SpoU rRNA Methylase family EP560_RS13665 PF11638 DnaA N-terminal domain EP560_RS13665 PF00308 Bacterial dnaA protein EP560_RS13665 PF08299 Bacterial dnaA protein helix-turn-helix EP560_RS13670 PF01594 AI-2E family transporter EP560_RS13675 PF00586 AIR synthase related protein, N-terminal domain EP560_RS13675 PF02769 AIR synthase related protein, C-terminal domain EP560_RS13680 PF00551 Formyl transferase EP560_RS13685 PF12697 Alpha/beta hydrolase family EP560_RS13690 PF01343 Peptidase family S49 EP560_RS13690 PF06965 Na+/H+ antiporter 1 EP560_RS13700 PF03772 Competence protein EP560_RS13700 PF13567 Domain of unknown function (DUF4131) EP560_RS13700 PF00753 Metallo-beta-lactamase superfamily EP560_RS13705 PF00005 ABC transporter EP560_RS13710 PF02687 FtsX-like permease family EP560_RS13710 PF12704 MacB-like periplasmic core domain EP560_RS13720 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EP560_RS13730 PF00266 Aminotransferase class-V EP560_RS13740 PF13533 Biotin-lipoyl like EP560_RS13760 PF00535 Glycosyl transferase family 2 EP560_RS13775 PF03989 DNA gyrase C-terminal domain, beta-propeller EP560_RS13775 PF00521 DNA gyrase/topoisomerase IV, subunit A EP560_RS13780 PF00766 Electron transfer flavoprotein FAD-binding domain EP560_RS13780 PF01012 Electron transfer flavoprotein domain EP560_RS13785 PF01012 Electron transfer flavoprotein domain EP560_RS13790 PF00589 Phage integrase family EP560_RS13790 PF02899 Phage integrase, N-terminal SAM-like domain EP560_RS13795 PF01810 LysE type translocator EP560_RS13800 PF01678 Diaminopimelate epimerase EP560_RS13805 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EP560_RS13805 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EP560_RS13815 PF00324 Amino acid permease EP560_RS13820 PF18073 Rubredoxin metal binding domain EP560_RS13830 PF00152 tRNA synthetases class II (D, K and N) EP560_RS13835 PF11890 Domain of unknown function (DUF3410) EP560_RS13835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_RS13835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_RS13840 PF06803 Protein of unknown function (DUF1232) EP560_RS13845 PF02634 FdhD/NarQ family EP560_RS13850 PF00384 Molybdopterin oxidoreductase EP560_RS13855 PF02595 Glycerate kinase family EP560_RS13870 PF00881 Nitroreductase family EP560_RS13895 PF00665 Integrase core domain EP560_RS13895 PF13936 Helix-turn-helix domain EP560_RS13905 PF13193 AMP-binding enzyme C-terminal domain EP560_RS13905 PF00975 Thioesterase domain EP560_RS13905 PF00550 Phosphopantetheine attachment site EP560_RS13905 PF00668 Condensation domain EP560_RS13905 PF00501 AMP-binding enzyme EP560_RS13920 PF03449 Transcription elongation factor, N-terminal EP560_RS13920 PF01272 Transcription elongation factor, GreA/GreB, C-term EP560_RS13925 PF01464 Transglycosylase SLT domain EP560_RS13925 PF00497 Bacterial extracellular solute-binding proteins, family 3 EP560_RS13935 PF01171 PP-loop family EP560_RS13945 PF01464 Transglycosylase SLT domain EP560_RS13950 PF01435 Peptidase family M48 EP560_RS13960 PF00873 AcrB/AcrD/AcrF family EP560_RS13965 PF03009 Glycerophosphoryl diester phosphodiesterase family EP560_RS13970 PF00753 Metallo-beta-lactamase superfamily EP560_RS13975 PF01219 Prokaryotic diacylglycerol kinase EP560_RS13980 PF00118 TCP-1/cpn60 chaperonin family EP560_RS13985 PF00166 Chaperonin 10 Kd subunit EP560_RS13995 PF00149 Calcineurin-like phosphoesterase EP560_RS14000 PF00781 Diacylglycerol kinase catalytic domain EP560_RS14005 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain EP560_RS14005 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain EP560_RS14010 PF01266 FAD dependent oxidoreductase EP560_RS14010 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EP560_RS14015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EP560_RS14015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EP560_RS14020 PF00083 Sugar (and other) transporter EP560_RS14035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EP560_RS14035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EP560_RS14050 PF16655 PhoD-like phosphatase, N-terminal domain EP560_RS14050 PF09423 PhoD-like phosphatase EP560_RS14075 PF00809 Pterin binding enzyme EP560_RS14080 PF01434 Peptidase family M41 EP560_RS14080 PF06480 FtsH Extracellular EP560_RS14080 PF17862 AAA+ lid domain EP560_RS14080 PF00004 ATPase family associated with various cellular activities (AAA) EP560_RS14085 PF01728 FtsJ-like methyltransferase EP560_RS14090 PF01985 CRS1 / YhbY (CRM) domain EP560_RS14105 PF00117 Glutamine amidotransferase class-I EP560_RS14105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EP560_RS14110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_RS14110 PF02142 MGS-like domain EP560_RS14110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EP560_RS14115 PF01272 Transcription elongation factor, GreA/GreB, C-term EP560_RS14115 PF03449 Transcription elongation factor, N-terminal EP560_RS14120 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS14125 PF00582 Universal stress protein family EP560_RS14130 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EP560_RS14140 PF09587 Bacterial capsule synthesis protein PGA_cap EP560_RS14155 PF00999 Sodium/hydrogen exchanger family EP560_RS14160 PF04228 Putative neutral zinc metallopeptidase EP560_RS14165 PF05661 Protein of unknown function (DUF808) EP560_RS14170 PF00579 tRNA synthetases class I (W and Y) EP560_RS14175 PF00549 CoA-ligase EP560_RS14175 PF02629 CoA binding domain EP560_RS14180 PF08442 ATP-grasp domain EP560_RS14180 PF00549 CoA-ligase EP560_RS14185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_RS14185 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS14190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP560_RS14190 PF02817 e3 binding domain EP560_RS14190 PF00364 Biotin-requiring enzyme EP560_RS14195 PF00676 Dehydrogenase E1 component EP560_RS14195 PF16870 2-oxoglutarate dehydrogenase C-terminal EP560_RS14195 PF02779 Transketolase, pyrimidine binding domain EP560_RS14195 PF16078 2-oxoglutarate dehydrogenase N-terminus EP560_RS14210 PF13085 2Fe-2S iron-sulfur cluster binding domain EP560_RS14215 PF02910 Fumarate reductase flavoprotein C-term EP560_RS14215 PF00890 FAD binding domain EP560_RS14220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP560_RS14225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EP560_RS14230 PF00285 Citrate synthase, C-terminal domain EP560_RS14240 PF17773 UPF0176 acylphosphatase like domain EP560_RS14240 PF00581 Rhodanese-like domain EP560_RS14260 PF04546 Sigma-70, non-essential region EP560_RS14260 PF03979 Sigma-70 factor, region 1.1 EP560_RS14260 PF00140 Sigma-70 factor, region 1.2 EP560_RS14260 PF04542 Sigma-70 region 2 EP560_RS14260 PF04539 Sigma-70 region 3 EP560_RS14260 PF04545 Sigma-70, region 4 EP560_RS14265 PF04359 Protein of unknown function (DUF493) EP560_RS14270 PF03099 Biotin/lipoate A/B protein ligase family EP560_RS14280 PF00465 Iron-containing alcohol dehydrogenase EP560_RS14285 PF13520 Amino acid permease EP560_RS14290 PF03358 NADPH-dependent FMN reductase EP560_RS14295 PF01638 HxlR-like helix-turn-helix EP560_RS14300 PF00588 SpoU rRNA Methylase family EP560_RS14305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EP560_RS14305 PF14824 Sirohaem biosynthesis protein central EP560_RS14305 PF10414 Sirohaem synthase dimerisation region EP560_RS14310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP560_RS14310 PF02403 Seryl-tRNA synthetase N-terminal domain EP560_RS14320 PF03548 Outer membrane lipoprotein carrier protein LolA EP560_RS14325 PF01016 Ribosomal L27 protein EP560_RS14330 PF00829 Ribosomal prokaryotic L21 protein EP560_RS14340 PF00348 Polyprenyl synthetase EP560_RS14350 PF01569 PAP2 superfamily EP560_RS14355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_RS14355 PF00529 HlyD membrane-fusion protein of T1SS EP560_RS14360 PF00873 AcrB/AcrD/AcrF family EP560_RS14365 PF02321 Outer membrane efflux protein EP560_RS14370 PF01906 Putative heavy-metal-binding EP560_RS14375 PF01906 Putative heavy-metal-binding EP560_RS14395 PF08264 Anticodon-binding domain of tRNA EP560_RS14395 PF10458 Valyl tRNA synthetase tRNA binding arm EP560_RS14395 PF00133 tRNA synthetases class I (I, L, M and V) EP560_RS14415 PF03466 LysR substrate binding domain EP560_RS14415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS14425 PF00909 Ammonium Transporter Family EP560_RS14435 PF08521 Two-component sensor kinase N-terminal EP560_RS14435 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS14440 PF00072 Response regulator receiver domain EP560_RS14440 PF00486 Transcriptional regulatory protein, C terminal EP560_RS14445 PF08019 Phosphoethanolamine transferase EptA/EptB EP560_RS14445 PF00884 Sulfatase EP560_RS14465 PF01734 Patatin-like phospholipase EP560_RS14475 PF01145 SPFH domain / Band 7 family EP560_RS14480 PF04237 YjbR EP560_RS14485 PF00348 Polyprenyl synthetase EP560_RS14490 PF04303 PrpF protein EP560_RS14495 PF00324 Amino acid permease EP560_RS14505 PF01965 DJ-1/PfpI family EP560_RS14510 PF08659 KR domain EP560_RS14510 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_RS14510 PF16197 Ketoacyl-synthetase C-terminal extension EP560_RS14510 PF00550 Phosphopantetheine attachment site EP560_RS14510 PF14765 Polyketide synthase dehydratase EP560_RS14510 PF09277 Erythronolide synthase, docking EP560_RS14510 PF08990 Erythronolide synthase docking EP560_RS14510 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS14510 PF00698 Acyl transferase domain EP560_RS14510 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_RS14515 PF06719 AraC-type transcriptional regulator N-terminus EP560_RS14515 PF12833 Helix-turn-helix domain EP560_RS14520 PF02673 Bacitracin resistance protein BacA EP560_RS14540 PF02525 Flavodoxin-like fold EP560_RS14555 PF01507 Phosphoadenosine phosphosulfate reductase family EP560_RS14560 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EP560_RS14560 PF06974 Protein of unknown function (DUF1298) EP560_RS14570 PF00575 S1 RNA binding domain EP560_RS14570 PF10150 Ribonuclease E/G family EP560_RS14575 PF02545 Maf-like protein EP560_RS14580 PF04093 rod shape-determining protein MreD EP560_RS14585 PF04085 rod shape-determining protein MreC EP560_RS14595 PF02686 Glu-tRNAGln amidotransferase C subunit EP560_RS14600 PF01425 Amidase EP560_RS14605 PF02934 GatB/GatE catalytic domain EP560_RS14605 PF02637 GatB domain EP560_RS14635 PF05992 SbmA/BacA-like family EP560_RS14640 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS14640 PF13291 ACT domain EP560_RS14645 PF01734 Patatin-like phospholipase EP560_RS14650 PF01235 Sodium:alanine symporter family EP560_RS14665 PF00881 Nitroreductase family EP560_RS14670 PF07690 Major Facilitator Superfamily EP560_RS14675 PF12805 FUSC-like inner membrane protein yccS EP560_RS14685 PF00667 FAD binding domain EP560_RS14685 PF00258 Flavodoxin EP560_RS14685 PF00175 Oxidoreductase NAD-binding domain EP560_RS14700 PF03734 L,D-transpeptidase catalytic domain EP560_RS14700 PF17969 L,D-transpeptidase C-terminal domain EP560_RS14705 PF04304 Protein of unknown function (DUF454) EP560_RS14715 PF08085 Entericidin EcnA/B family EP560_RS14720 PF07687 Peptidase dimerisation domain EP560_RS14720 PF01546 Peptidase family M20/M25/M40 EP560_RS14735 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EP560_RS14735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EP560_RS14740 PF01584 CheW-like domain EP560_RS14745 PF00072 Response regulator receiver domain EP560_RS14750 PF00072 Response regulator receiver domain EP560_RS14765 PF00873 AcrB/AcrD/AcrF family EP560_RS14770 PF03129 Anticodon binding domain EP560_RS14770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EP560_RS14770 PF04073 Aminoacyl-tRNA editing domain EP560_RS14775 PF07411 Domain of unknown function (DUF1508) EP560_RS14780 PF08274 PhnA Zinc-Ribbon EP560_RS14780 PF03831 PhnA domain EP560_RS14785 PF04343 Protein of unknown function, DUF488 EP560_RS14795 PF01571 Aminomethyltransferase folate-binding domain EP560_RS14800 PF13098 Thioredoxin-like domain EP560_RS14800 PF10411 Disulfide bond isomerase protein N-terminus EP560_RS14810 PF03547 Membrane transport protein EP560_RS14815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_RS14825 PF02245 Methylpurine-DNA glycosylase (MPG) EP560_RS14830 PF06827 Zinc finger found in FPG and IleRS EP560_RS14830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EP560_RS14830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EP560_RS14845 PF01741 Large-conductance mechanosensitive channel, MscL EP560_RS14850 PF00009 Elongation factor Tu GTP binding domain EP560_RS14850 PF00679 Elongation factor G C-terminus EP560_RS14850 PF03144 Elongation factor Tu domain 2 EP560_RS14855 PF00860 Permease family EP560_RS14860 PF08468 Methyltransferase small domain N-terminal EP560_RS14860 PF05175 Methyltransferase small domain EP560_RS14865 PF00324 Amino acid permease EP560_RS14870 PF01139 tRNA-splicing ligase RtcB EP560_RS14875 PF00691 OmpA family EP560_RS14875 PF13505 Outer membrane protein beta-barrel domain EP560_RS14885 PF00108 Thiolase, N-terminal domain EP560_RS14885 PF02803 Thiolase, C-terminal domain EP560_RS14895 PF00893 Small Multidrug Resistance protein EP560_RS14905 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EP560_RS14905 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EP560_RS14910 PF01011 PQQ enzyme repeat EP560_RS14915 PF04966 Carbohydrate-selective porin, OprB family EP560_RS14920 PF02515 CoA-transferase family III EP560_RS14925 PF12833 Helix-turn-helix domain EP560_RS14925 PF02311 AraC-like ligand binding domain EP560_RS14930 PF00108 Thiolase, N-terminal domain EP560_RS14930 PF02803 Thiolase, C-terminal domain EP560_RS14935 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS14935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EP560_RS14935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EP560_RS14960 PF03006 Haemolysin-III related EP560_RS14965 PF07690 Major Facilitator Superfamily EP560_RS14965 PF00083 Sugar (and other) transporter EP560_RS14975 PF02810 SEC-C motif EP560_RS14975 PF07517 SecA DEAD-like domain EP560_RS14975 PF01043 SecA preprotein cross-linking domain EP560_RS14975 PF07516 SecA Wing and Scaffold domain EP560_RS14980 PF00578 AhpC/TSA family EP560_RS14980 PF10417 C-terminal domain of 1-Cys peroxiredoxin EP560_RS14985 PF00753 Metallo-beta-lactamase superfamily EP560_RS15000 PF02875 Mur ligase family, glutamate ligase domain EP560_RS15000 PF08245 Mur ligase middle domain EP560_RS15005 PF01039 Carboxyl transferase domain EP560_RS15010 PF00290 Tryptophan synthase alpha chain EP560_RS15035 PF00291 Pyridoxal-phosphate dependent enzyme EP560_RS15040 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EP560_RS15045 PF00593 TonB dependent receptor EP560_RS15045 PF07715 TonB-dependent Receptor Plug Domain EP560_RS15050 PF01923 Cobalamin adenosyltransferase EP560_RS15055 PF03009 Glycerophosphoryl diester phosphodiesterase family EP560_RS15070 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EP560_RS15075 PF00072 Response regulator receiver domain EP560_RS15075 PF00486 Transcriptional regulatory protein, C terminal EP560_RS15080 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS15080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS15080 PF00672 HAMP domain EP560_RS15090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS15090 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS15090 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_RS15090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS15095 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS15095 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_RS15095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS15095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS15100 PF06146 Phosphate-starvation-inducible E EP560_RS15120 PF07715 TonB-dependent Receptor Plug Domain EP560_RS15120 PF00593 TonB dependent receptor EP560_RS15130 PF00152 tRNA synthetases class II (D, K and N) EP560_RS15130 PF01336 OB-fold nucleic acid binding domain EP560_RS15130 PF02938 GAD domain EP560_RS15145 PF13737 Transposase DDE domain EP560_RS15160 PF13936 Helix-turn-helix domain EP560_RS15160 PF00665 Integrase core domain EP560_RS15180 PF00534 Glycosyl transferases group 1 EP560_RS15180 PF13439 Glycosyltransferase Family 4 EP560_RS15185 PF00535 Glycosyl transferase family 2 EP560_RS15190 PF01522 Polysaccharide deacetylase EP560_RS15205 PF01063 Amino-transferase class IV EP560_RS15210 PF08335 GlnD PII-uridylyltransferase EP560_RS15210 PF03710 Glutamate-ammonia ligase adenylyltransferase EP560_RS15215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS15215 PF07689 KaiB domain EP560_RS15215 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS15225 PF02547 Queuosine biosynthesis protein EP560_RS15240 PF01702 Queuine tRNA-ribosyltransferase EP560_RS15245 PF02699 Preprotein translocase subunit EP560_RS15250 PF07549 SecD/SecF GG Motif EP560_RS15250 PF13721 SecD export protein N-terminal TM region EP560_RS15250 PF02355 Protein export membrane protein EP560_RS15255 PF07549 SecD/SecF GG Motif EP560_RS15255 PF02355 Protein export membrane protein EP560_RS15260 PF02441 Flavoprotein EP560_RS15260 PF04127 DNA / pantothenate metabolism flavoprotein EP560_RS15265 PF04002 RadC-like JAB domain EP560_RS15270 PF01062 Bestrophin, RFP-TM, chloride channel EP560_RS15275 PF02811 PHP domain EP560_RS15280 PF04279 Intracellular septation protein A EP560_RS15285 PF03795 YCII-related domain EP560_RS15295 PF01266 FAD dependent oxidoreductase EP560_RS15295 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EP560_RS15305 PF04461 Protein of unknown function (DUF520) EP560_RS15315 PF03061 Thioesterase superfamily EP560_RS15320 PF00085 Thioredoxin EP560_RS15325 PF00561 alpha/beta hydrolase fold EP560_RS15330 PF00753 Metallo-beta-lactamase superfamily EP560_RS15330 PF04273 Putative phosphatase (DUF442) EP560_RS15340 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS15340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EP560_RS15375 PF17152 Periplasmic sensor domain EP560_RS15375 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS15385 PF01389 OmpA-like transmembrane domain EP560_RS15385 PF00691 OmpA family EP560_RS15390 PF00149 Calcineurin-like phosphoesterase EP560_RS15390 PF10518 TAT (twin-arginine translocation) pathway signal sequence EP560_RS15395 PF13091 PLD-like domain EP560_RS15405 PF01926 50S ribosome-binding GTPase EP560_RS15405 PF13167 GTP-binding GTPase N-terminal EP560_RS15405 PF16360 GTP-binding GTPase Middle Region EP560_RS15425 PF00149 Calcineurin-like phosphoesterase EP560_RS15430 PF00398 Ribosomal RNA adenine dimethylase EP560_RS15435 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EP560_RS15440 PF00572 Ribosomal protein L13 EP560_RS15445 PF00380 Ribosomal protein S9/S16 EP560_RS15450 PF00043 Glutathione S-transferase, C-terminal domain EP560_RS15450 PF13417 Glutathione S-transferase, N-terminal domain EP560_RS15455 PF04386 Stringent starvation protein B EP560_RS15465 PF00364 Biotin-requiring enzyme EP560_RS15465 PF02785 Biotin carboxylase C-terminal domain EP560_RS15465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EP560_RS15465 PF00289 Biotin carboxylase, N-terminal domain EP560_RS15475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS15475 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS15475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS15480 PF01039 Carboxyl transferase domain EP560_RS15495 PF17932 Tetracyclin repressor-like, C-terminal domain EP560_RS15495 PF00440 Bacterial regulatory proteins, tetR family EP560_RS15500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS15500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS15500 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS15545 PF01066 CDP-alcohol phosphatidyltransferase EP560_RS15550 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EP560_RS15570 PF00056 lactate/malate dehydrogenase, NAD binding domain EP560_RS15570 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EP560_RS15580 PF01551 Peptidase family M23 EP560_RS15580 PF01464 Transglycosylase SLT domain EP560_RS15580 PF10145 Phage-related minor tail protein EP560_RS15585 PF01938 TRAM domain EP560_RS15585 PF00919 Uncharacterized protein family UPF0004 EP560_RS15585 PF04055 Radical SAM superfamily EP560_RS15590 PF02562 PhoH-like protein EP560_RS15595 PF02130 Uncharacterized protein family UPF0054 EP560_RS15620 PF03358 NADPH-dependent FMN reductase EP560_RS15625 PF03631 Virulence factor BrkB EP560_RS15630 PF00892 EamA-like transporter family EP560_RS15635 PF12833 Helix-turn-helix domain EP560_RS15640 PF01557 Fumarylacetoacetate (FAA) hydrolase family EP560_RS15685 PF08461 Ribonuclease R winged-helix domain EP560_RS15685 PF08206 Ribonuclease B OB domain EP560_RS15685 PF17876 Cold shock domain EP560_RS15685 PF00575 S1 RNA binding domain EP560_RS15685 PF00773 RNB domain EP560_RS15690 PF01432 Peptidase family M3 EP560_RS15695 PF09526 Probable metal-binding protein (DUF2387) EP560_RS15725 PF03937 Flavinator of succinate dehydrogenase EP560_RS15730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS15730 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS15730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS15735 PF00743 Flavin-binding monooxygenase-like EP560_RS15740 PF01196 Ribosomal protein L17 EP560_RS15745 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EP560_RS15745 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EP560_RS15745 PF01000 RNA polymerase Rpb3/RpoA insert domain EP560_RS15750 PF00163 Ribosomal protein S4/S9 N-terminal domain EP560_RS15750 PF01479 S4 domain EP560_RS15755 PF00411 Ribosomal protein S11 EP560_RS15760 PF00416 Ribosomal protein S13/S18 EP560_RS15765 PF00444 Ribosomal protein L36 EP560_RS15770 PF00344 SecY translocase EP560_RS15775 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EP560_RS15780 PF00327 Ribosomal protein L30p/L7e EP560_RS15785 PF00333 Ribosomal protein S5, N-terminal domain EP560_RS15785 PF03719 Ribosomal protein S5, C-terminal domain EP560_RS15790 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EP560_RS15795 PF00347 Ribosomal protein L6 EP560_RS15800 PF00410 Ribosomal protein S8 EP560_RS15805 PF00253 Ribosomal protein S14p/S29e EP560_RS15810 PF00281 Ribosomal protein L5 EP560_RS15810 PF00673 ribosomal L5P family C-terminus EP560_RS15815 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EP560_RS15815 PF00467 KOW motif EP560_RS15820 PF00238 Ribosomal protein L14p/L23e EP560_RS15825 PF00366 Ribosomal protein S17 EP560_RS15830 PF00831 Ribosomal L29 protein EP560_RS15835 PF00252 Ribosomal protein L16p/L10e EP560_RS15840 PF07650 KH domain EP560_RS15840 PF00189 Ribosomal protein S3, C-terminal domain EP560_RS15845 PF00237 Ribosomal protein L22p/L17e EP560_RS15850 PF00203 Ribosomal protein S19 EP560_RS15855 PF03947 Ribosomal Proteins L2, C-terminal domain EP560_RS15855 PF00181 Ribosomal Proteins L2, RNA binding domain EP560_RS15860 PF00276 Ribosomal protein L23 EP560_RS15865 PF00573 Ribosomal protein L4/L1 family EP560_RS15870 PF00297 Ribosomal protein L3 EP560_RS15875 PF00338 Ribosomal protein S10p/S20e EP560_RS15880 PF00117 Glutamine amidotransferase class-I EP560_RS15885 PF01053 Cys/Met metabolism PLP-dependent enzyme EP560_RS15890 PF05872 Bacterial protein of unknown function (DUF853) EP560_RS15895 PF00042 Globin EP560_RS15895 PF00175 Oxidoreductase NAD-binding domain EP560_RS15895 PF00970 Oxidoreductase FAD-binding domain EP560_RS15900 PF02082 Transcriptional regulator EP560_RS15905 PF01926 50S ribosome-binding GTPase EP560_RS15915 PF00375 Sodium:dicarboxylate symporter family EP560_RS15925 PF01553 Acyltransferase EP560_RS15940 PF00271 Helicase conserved C-terminal domain EP560_RS15940 PF17191 RecG wedge domain EP560_RS15940 PF00270 DEAD/DEAH box helicase EP560_RS15945 PF00156 Phosphoribosyl transferase domain EP560_RS15950 PF00293 NUDIX domain EP560_RS15955 PF03641 Possible lysine decarboxylase EP560_RS15960 PF01544 CorA-like Mg2+ transporter protein EP560_RS15970 PF05494 MlaC protein EP560_RS15980 PF02405 Permease MlaE EP560_RS15985 PF00005 ABC transporter EP560_RS15995 PF00271 Helicase conserved C-terminal domain EP560_RS15995 PF03880 DbpA RNA binding domain EP560_RS15995 PF12343 Cold shock protein DEAD box A EP560_RS15995 PF00270 DEAD/DEAH box helicase EP560_RS16000 PF00459 Inositol monophosphatase family EP560_RS16005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EP560_RS16005 PF02780 Transketolase, C-terminal domain EP560_RS16005 PF02779 Transketolase, pyrimidine binding domain EP560_RS16010 PF00925 GTP cyclohydrolase II EP560_RS16015 PF01218 Coproporphyrinogen III oxidase EP560_RS16020 PF08501 Shikimate dehydrogenase substrate binding domain EP560_RS16020 PF01488 Shikimate / quinate 5-dehydrogenase EP560_RS16020 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EP560_RS16030 PF12806 Acetyl-CoA dehydrogenase C-terminal like EP560_RS16030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS16030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS16030 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS16040 PF04024 PspC domain EP560_RS16045 PF00571 CBS domain EP560_RS16070 PF02091 Glycyl-tRNA synthetase alpha subunit EP560_RS16075 PF02092 Glycyl-tRNA synthetase beta subunit EP560_RS16075 PF05746 DALR anticodon binding domain EP560_RS16090 PF00892 EamA-like transporter family EP560_RS16095 PF03466 LysR substrate binding domain EP560_RS16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS16110 PF05922 Peptidase inhibitor I9 EP560_RS16110 PF00082 Subtilase family EP560_RS16125 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EP560_RS16130 PF04996 Succinylarginine dihydrolase EP560_RS16135 PF00171 Aldehyde dehydrogenase family EP560_RS16140 PF04958 Arginine N-succinyltransferase beta subunit EP560_RS16145 PF00202 Aminotransferase class-III EP560_RS16150 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EP560_RS16150 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EP560_RS16155 PF00324 Amino acid permease EP560_RS16165 PF08241 Methyltransferase domain EP560_RS16185 PF13614 AAA domain EP560_RS16190 PF01594 AI-2E family transporter EP560_RS16195 PF00080 Copper/zinc superoxide dismutase (SODC) EP560_RS16215 PF07690 Major Facilitator Superfamily EP560_RS16225 PF02525 Flavodoxin-like fold EP560_RS16230 PF03992 Antibiotic biosynthesis monooxygenase EP560_RS16240 PF02913 FAD linked oxidases, C-terminal domain EP560_RS16240 PF01565 FAD binding domain EP560_RS16245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EP560_RS16245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EP560_RS16250 PF00892 EamA-like transporter family EP560_RS16255 PF00892 EamA-like transporter family EP560_RS16265 PF01925 Sulfite exporter TauE/SafE EP560_RS16270 PF09157 Pseudouridine synthase II TruB, C-terminal EP560_RS16270 PF16198 tRNA pseudouridylate synthase B C-terminal domain EP560_RS16270 PF01509 TruB family pseudouridylate synthase (N terminal domain) EP560_RS16275 PF03280 Proteobacterial lipase chaperone protein EP560_RS16280 PF00561 alpha/beta hydrolase fold EP560_RS16285 PF01245 Ribosomal protein L19 EP560_RS16290 PF01746 tRNA (Guanine-1)-methyltransferase EP560_RS16295 PF05239 PRC-barrel domain EP560_RS16295 PF01782 RimM N-terminal domain EP560_RS16300 PF00886 Ribosomal protein S16 EP560_RS16340 PF02401 LytB protein EP560_RS16345 PF00625 Guanylate kinase EP560_RS16350 PF01192 RNA polymerase Rpb6 EP560_RS16360 PF02824 TGS domain EP560_RS16360 PF04607 Region found in RelA / SpoT proteins EP560_RS16360 PF13291 ACT domain EP560_RS16365 PF01042 Endoribonuclease L-PSP EP560_RS16370 PF04324 BFD-like [2Fe-2S] binding domain EP560_RS16375 PF00210 Ferritin-like domain EP560_RS16380 PF15864 Protein glycosylation ligase EP560_RS16380 PF04932 O-Antigen ligase EP560_RS16380 PF11846 Virulence factor membrane-bound polymerase, C-terminal EP560_RS16385 PF00114 Pilin (bacterial filament) EP560_RS16385 PF07963 Prokaryotic N-terminal methylation motif EP560_RS16395 PF04536 TPM domain EP560_RS16400 PF04011 LemA family EP560_RS16410 PF07992 Pyridine nucleotide-disulphide oxidoreductase EP560_RS16410 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EP560_RS16415 PF04898 Glutamate synthase central domain EP560_RS16415 PF01493 GXGXG motif EP560_RS16415 PF01645 Conserved region in glutamate synthase EP560_RS16415 PF00310 Glutamine amidotransferases class-II EP560_RS16425 PF01761 3-dehydroquinate synthase EP560_RS16430 PF01202 Shikimate kinase EP560_RS16435 PF00263 Bacterial type II and III secretion system protein EP560_RS16435 PF03958 Bacterial type II/III secretion system short domain EP560_RS16435 PF11741 AMIN domain EP560_RS16435 PF07660 Secretin and TonB N terminus short domain EP560_RS16445 PF04350 Pilus assembly protein, PilO EP560_RS16450 PF05137 Fimbrial assembly protein (PilN) EP560_RS16455 PF11104 Type IV pilus assembly protein PilM; EP560_RS16460 PF17092 Penicillin-binding protein OB-like domain EP560_RS16460 PF00912 Transglycosylase EP560_RS16460 PF00905 Penicillin binding protein transpeptidase domain EP560_RS16465 PF13847 Methyltransferase domain EP560_RS16475 PF00953 Glycosyl transferase family 4 EP560_RS16480 PF02875 Mur ligase family, glutamate ligase domain EP560_RS16480 PF08245 Mur ligase middle domain EP560_RS16480 PF01225 Mur ligase family, catalytic domain EP560_RS16485 PF08245 Mur ligase middle domain EP560_RS16485 PF02875 Mur ligase family, glutamate ligase domain EP560_RS16485 PF01225 Mur ligase family, catalytic domain EP560_RS16490 PF03717 Penicillin-binding Protein dimerisation domain EP560_RS16490 PF00905 Penicillin binding protein transpeptidase domain EP560_RS16500 PF01795 MraW methylase family EP560_RS16515 PF00749 tRNA synthetases class I (E and Q), catalytic domain EP560_RS16530 PF00324 Amino acid permease EP560_RS16560 PF01545 Cation efflux family EP560_RS16565 PF00873 AcrB/AcrD/AcrF family EP560_RS16570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_RS16570 PF00529 HlyD membrane-fusion protein of T1SS EP560_RS16590 PF04191 Phospholipid methyltransferase EP560_RS16615 PF12848 ABC transporter EP560_RS16615 PF00005 ABC transporter EP560_RS16620 PF01053 Cys/Met metabolism PLP-dependent enzyme EP560_RS16625 PF00106 short chain dehydrogenase EP560_RS16630 PF00916 Sulfate permease family EP560_RS16630 PF01740 STAS domain EP560_RS16635 PF00575 S1 RNA binding domain EP560_RS16635 PF17674 HHH domain EP560_RS16635 PF16921 Tex protein YqgF-like domain EP560_RS16635 PF09371 Tex-like protein N-terminal domain EP560_RS16640 PF00486 Transcriptional regulatory protein, C terminal EP560_RS16640 PF00072 Response regulator receiver domain EP560_RS16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS16645 PF00672 HAMP domain EP560_RS16645 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS16655 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EP560_RS16655 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EP560_RS16660 PF00583 Acetyltransferase (GNAT) family EP560_RS16680 PF00475 Imidazoleglycerol-phosphate dehydratase EP560_RS16685 PF00117 Glutamine amidotransferase class-I EP560_RS16700 PF00977 Histidine biosynthesis protein EP560_RS16715 PF03992 Antibiotic biosynthesis monooxygenase EP560_RS16730 PF01636 Phosphotransferase enzyme family EP560_RS16735 PF00977 Histidine biosynthesis protein EP560_RS16750 PF00230 Major intrinsic protein EP560_RS16775 PF02705 K+ potassium transporter EP560_RS16795 PF02525 Flavodoxin-like fold EP560_RS16805 PF01638 HxlR-like helix-turn-helix EP560_RS16835 PF12833 Helix-turn-helix domain EP560_RS16835 PF02311 AraC-like ligand binding domain EP560_RS16840 PF00248 Aldo/keto reductase family EP560_RS16860 PF03466 LysR substrate binding domain EP560_RS16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS16865 PF07690 Major Facilitator Superfamily EP560_RS16905 PF01593 Flavin containing amine oxidoreductase EP560_RS16910 PF05726 Pirin C-terminal cupin domain EP560_RS16910 PF02678 Pirin EP560_RS16915 PF00857 Isochorismatase family EP560_RS16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS16925 PF00171 Aldehyde dehydrogenase family EP560_RS16930 PF00202 Aminotransferase class-III EP560_RS16935 PF00392 Bacterial regulatory proteins, gntR family EP560_RS16935 PF00155 Aminotransferase class I and II EP560_RS16940 PF00324 Amino acid permease EP560_RS16950 PF03591 AzlC protein EP560_RS16960 PF00436 Single-strand binding protein family EP560_RS16965 PF07690 Major Facilitator Superfamily EP560_RS16975 PF02581 Thiamine monophosphate synthase EP560_RS16975 PF08543 Phosphomethylpyrimidine kinase EP560_RS16975 PF03070 TENA/THI-4/PQQC family EP560_RS16980 PF06942 GlpM protein EP560_RS16995 PF00440 Bacterial regulatory proteins, tetR family EP560_RS16995 PF16925 Tetracyclin repressor-like, C-terminal domain EP560_RS17000 PF17760 UvrA interaction domain EP560_RS17000 PF17755 UvrA DNA-binding domain EP560_RS17000 PF00005 ABC transporter EP560_RS17010 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS17020 PF02028 BCCT, betaine/carnitine/choline family transporter EP560_RS17030 PF00474 Sodium:solute symporter family EP560_RS17035 PF04341 Protein of unknown function, DUF485 EP560_RS17040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS17040 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS17040 PF01627 Hpt domain EP560_RS17040 PF00072 Response regulator receiver domain EP560_RS17040 PF00672 HAMP domain EP560_RS17050 PF00196 Bacterial regulatory proteins, luxR family EP560_RS17050 PF00072 Response regulator receiver domain EP560_RS17055 PF03358 NADPH-dependent FMN reductase EP560_RS17060 PF00296 Luciferase-like monooxygenase EP560_RS17065 PF01037 Lrp/AsnC ligand binding domain EP560_RS17070 PF00857 Isochorismatase family EP560_RS17075 PF16177 Acetyl-coenzyme A synthetase N-terminus EP560_RS17075 PF00501 AMP-binding enzyme EP560_RS17075 PF13193 AMP-binding enzyme C-terminal domain EP560_RS17085 PF00924 Mechanosensitive ion channel EP560_RS17090 PF04452 RNA methyltransferase EP560_RS17095 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EP560_RS17100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EP560_RS17120 PF02272 DHHA1 domain EP560_RS17120 PF17768 RecJ OB domain EP560_RS17120 PF01368 DHH family EP560_RS17125 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EP560_RS17125 PF01243 Pyridoxamine 5'-phosphate oxidase EP560_RS17130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP560_RS17130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP560_RS17130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP560_RS17130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP560_RS17135 PF00571 CBS domain EP560_RS17135 PF00478 IMP dehydrogenase / GMP reductase domain EP560_RS17140 PF03692 Putative zinc- or iron-chelating domain EP560_RS17145 PF00258 Flavodoxin EP560_RS17145 PF01613 Flavin reductase like domain EP560_RS17150 PF07715 TonB-dependent Receptor Plug Domain EP560_RS17150 PF00593 TonB dependent receptor EP560_RS17155 PF01169 Uncharacterized protein family UPF0016 EP560_RS17165 PF02817 e3 binding domain EP560_RS17165 PF00364 Biotin-requiring enzyme EP560_RS17165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EP560_RS17170 PF00456 Transketolase, thiamine diphosphate binding domain EP560_RS17170 PF17831 Pyruvate dehydrogenase E1 component middle domain EP560_RS17175 PF01551 Peptidase family M23 EP560_RS17185 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EP560_RS17190 PF00091 Tubulin/FtsZ family, GTPase domain EP560_RS17190 PF12327 FtsZ family, C-terminal domain EP560_RS17195 PF02491 SHS2 domain inserted in FTSA EP560_RS17200 PF03799 Cell division protein FtsQ EP560_RS17200 PF08478 POTRA domain, FtsQ-type EP560_RS17205 PF07478 D-ala D-ala ligase C-terminus EP560_RS17205 PF01820 D-ala D-ala ligase N-terminus EP560_RS17210 PF08245 Mur ligase middle domain EP560_RS17210 PF02875 Mur ligase family, glutamate ligase domain EP560_RS17210 PF01225 Mur ligase family, catalytic domain EP560_RS17215 PF04101 Glycosyltransferase family 28 C-terminal domain EP560_RS17215 PF03033 Glycosyltransferase family 28 N-terminal domain EP560_RS17220 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EP560_RS17220 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EP560_RS17235 PF00156 Phosphoribosyl transferase domain EP560_RS17240 PF03372 Endonuclease/Exonuclease/phosphatase family EP560_RS17245 PF03960 ArsC family EP560_RS17255 PF07859 alpha/beta hydrolase fold EP560_RS17260 PF00990 Diguanylate cyclase, GGDEF domain EP560_RS17260 PF07694 5TMR of 5TMR-LYT EP560_RS17265 PF02683 Cytochrome C biogenesis protein transmembrane region EP560_RS17265 PF11412 Disulphide bond corrector protein DsbC EP560_RS17295 PF00576 HIUase/Transthyretin family EP560_RS17300 PF00860 Permease family EP560_RS17310 PF01494 FAD binding domain EP560_RS17315 PF03561 Allantoicase repeat EP560_RS17320 PF04115 Ureidoglycolate lyase EP560_RS17325 PF00106 short chain dehydrogenase EP560_RS17330 PF00204 DNA gyrase B EP560_RS17330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS17330 PF00986 DNA gyrase B subunit, carboxyl terminus EP560_RS17330 PF01751 Toprim domain EP560_RS17335 PF05728 Uncharacterised protein family (UPF0227) EP560_RS17355 PF13005 zinc-finger binding domain of transposase IS66 EP560_RS17355 PF13817 IS66 C-terminal element EP560_RS17355 PF03050 Transposase IS66 family EP560_RS17355 PF13007 Transposase C of IS166 homeodomain EP560_RS17365 PF00746 LPXTG cell wall anchor motif EP560_RS17365 PF03373 Octapeptide repeat EP560_RS17365 PF04650 YSIRK type signal peptide EP560_RS17365 PF02216 B domain EP560_RS17365 PF01476 LysM domain EP560_RS17375 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) EP560_RS17375 PF04717 Type VI secretion system, phage-baseplate injector EP560_RS17375 PF13296 Putative type VI secretion system Rhs element Vgr EP560_RS17380 PF02600 Disulfide bond formation protein DsbB EP560_RS17385 PF04262 Glutamate-cysteine ligase EP560_RS17400 PF04286 Protein of unknown function (DUF445) EP560_RS17405 PF00155 Aminotransferase class I and II EP560_RS17410 PF01554 MatE EP560_RS17415 PF00106 short chain dehydrogenase EP560_RS17425 PF00072 Response regulator receiver domain EP560_RS17425 PF00486 Transcriptional regulatory protein, C terminal EP560_RS17430 PF11808 Phosphate regulon sensor protein PhoR EP560_RS17430 PF00989 PAS fold EP560_RS17430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EP560_RS17430 PF00512 His Kinase A (phospho-acceptor) domain EP560_RS17440 PF01547 Bacterial extracellular solute-binding protein EP560_RS17445 PF03069 Acetamidase/Formamidase family EP560_RS17450 PF02666 Phosphatidylserine decarboxylase EP560_RS17455 PF00581 Rhodanese-like domain EP560_RS17460 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EP560_RS17460 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EP560_RS17470 PF00199 Catalase EP560_RS17470 PF06628 Catalase-related immune-responsive EP560_RS17475 PF02580 D-Tyr-tRNA(Tyr) deacylase EP560_RS17505 PF00925 GTP cyclohydrolase II EP560_RS17505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EP560_RS17510 PF00885 6,7-dimethyl-8-ribityllumazine synthase EP560_RS17515 PF01029 NusB family EP560_RS17520 PF02769 AIR synthase related protein, C-terminal domain EP560_RS17520 PF00586 AIR synthase related protein, N-terminal domain EP560_RS17525 PF04608 Phosphatidylglycerophosphatase A EP560_RS17530 PF14602 Hexapeptide repeat of succinyl-transferase EP560_RS17530 PF12804 MobA-like NTP transferase domain EP560_RS17530 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS17535 PF01380 SIS domain EP560_RS17540 PF08721 TnsA endonuclease C terminal EP560_RS17540 PF08722 TnsA endonuclease N terminal EP560_RS17545 PF00665 Integrase core domain EP560_RS17550 PF13401 AAA domain EP560_RS17550 PF11426 Tn7 transposition regulator TnsC EP560_RS17555 PF15978 Tn7-like transposition protein D EP560_RS17555 PF06527 TniQ EP560_RS17570 PF02086 D12 class N6 adenine-specific DNA methyltransferase EP560_RS17580 PF01177 Asp/Glu/Hydantoin racemase EP560_RS17595 PF00491 Arginase family EP560_RS17600 PF01979 Amidohydrolase family EP560_RS17605 PF00324 Amino acid permease EP560_RS17610 PF00221 Aromatic amino acid lyase EP560_RS17615 PF17391 Urocanase N-terminal domain EP560_RS17615 PF17392 Urocanase C-terminal domain EP560_RS17615 PF01175 Urocanase Rossmann-like domain EP560_RS17620 PF05962 HutD EP560_RS17625 PF07702 UTRA domain EP560_RS17625 PF00392 Bacterial regulatory proteins, gntR family EP560_RS17635 PF02492 CobW/HypB/UreG, nucleotide-binding domain EP560_RS17635 PF07683 Cobalamin synthesis protein cobW C-terminal domain EP560_RS17645 PF00324 Amino acid permease EP560_RS17655 PF02798 Glutathione S-transferase, N-terminal domain EP560_RS17655 PF14497 Glutathione S-transferase, C-terminal domain EP560_RS17660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_RS17670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EP560_RS17675 PF04463 Protein of unknown function (DUF523) EP560_RS17680 PF01554 MatE EP560_RS17685 PF01758 Sodium Bile acid symporter family EP560_RS17690 PF00857 Isochorismatase family EP560_RS17695 PF00701 Dihydrodipicolinate synthetase family EP560_RS17705 PF01259 SAICAR synthetase EP560_RS17720 PF01226 Formate/nitrite transporter EP560_RS17725 PF00004 ATPase family associated with various cellular activities (AAA) EP560_RS17725 PF16193 AAA C-terminal domain EP560_RS17725 PF12002 MgsA AAA+ ATPase C terminal EP560_RS17730 PF07995 Glucose / Sorbosone dehydrogenase EP560_RS17735 PF03692 Putative zinc- or iron-chelating domain EP560_RS17740 PF07043 Protein of unknown function (DUF1328) EP560_RS17745 PF02230 Phospholipase/Carboxylesterase EP560_RS17755 PF00633 Helix-hairpin-helix motif EP560_RS17755 PF10576 Iron-sulfur binding domain of endonuclease III EP560_RS17755 PF00730 HhH-GPD superfamily base excision DNA repair protein EP560_RS17755 PF14815 NUDIX domain EP560_RS17770 PF03352 Methyladenine glycosylase EP560_RS17775 PF00107 Zinc-binding dehydrogenase EP560_RS17775 PF08240 Alcohol dehydrogenase GroES-like domain EP560_RS17780 PF00155 Aminotransferase class I and II EP560_RS17780 PF00392 Bacterial regulatory proteins, gntR family EP560_RS17795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS17795 PF03466 LysR substrate binding domain EP560_RS17800 PF00248 Aldo/keto reductase family EP560_RS17805 PF07690 Major Facilitator Superfamily EP560_RS17815 PF05173 Dihydrodipicolinate reductase, C-terminus EP560_RS17815 PF01113 Dihydrodipicolinate reductase, N-terminus EP560_RS17825 PF00226 DnaJ domain EP560_RS17825 PF00684 DnaJ central domain EP560_RS17825 PF01556 DnaJ C terminal domain EP560_RS17835 PF00873 AcrB/AcrD/AcrF family EP560_RS17840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EP560_RS17845 PF00440 Bacterial regulatory proteins, tetR family EP560_RS17845 PF08361 MAATS-type transcriptional repressor, C-terminal region EP560_RS17850 PF00311 Phosphoenolpyruvate carboxylase EP560_RS17855 PF00860 Permease family EP560_RS17860 PF03466 LysR substrate binding domain EP560_RS17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EP560_RS17875 PF00920 Dehydratase family EP560_RS17880 PF00551 Formyl transferase EP560_RS17880 PF02911 Formyl transferase, C-terminal domain EP560_RS17885 PF01029 NusB family EP560_RS17885 PF01189 16S rRNA methyltransferase RsmB/F EP560_RS17895 PF00209 Sodium:neurotransmitter symporter family EP560_RS17935 PF00440 Bacterial regulatory proteins, tetR family EP560_RS17960 PF01327 Polypeptide deformylase EP560_RS17970 PF17782 DprA winged helix domain EP560_RS17970 PF02481 DNA recombination-mediator protein A EP560_RS17975 PF01300 Telomere recombination EP560_RS17980 PF00892 EamA-like transporter family EP560_RS17985 PF00440 Bacterial regulatory proteins, tetR family EP560_RS17990 PF07690 Major Facilitator Superfamily EP560_RS18000 PF00255 Glutathione peroxidase EP560_RS18010 PF11008 Protein of unknown function (DUF2846) EP560_RS18015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EP560_RS18020 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP560_RS18020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP560_RS18025 PF00231 ATP synthase EP560_RS18030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EP560_RS18030 PF02874 ATP synthase alpha/beta family, beta-barrel domain EP560_RS18030 PF00306 ATP synthase alpha/beta chain, C terminal domain EP560_RS18035 PF00213 ATP synthase delta (OSCP) subunit EP560_RS18040 PF00430 ATP synthase B/B' CF(0) EP560_RS18045 PF00137 ATP synthase subunit C EP560_RS18050 PF00119 ATP synthase A chain EP560_RS18070 PF00005 ABC transporter EP560_RS18075 PF00950 ABC 3 transport family EP560_RS18080 PF01810 LysE type translocator EP560_RS18085 PF04261 Dyp-type peroxidase family EP560_RS18090 PF03949 Malic enzyme, NAD binding domain EP560_RS18090 PF00390 Malic enzyme, N-terminal domain EP560_RS18095 PF05746 DALR anticodon binding domain EP560_RS18095 PF03485 Arginyl tRNA synthetase N terminal domain EP560_RS18095 PF00750 tRNA synthetases class I (R) EP560_RS18115 PF05726 Pirin C-terminal cupin domain EP560_RS18115 PF02678 Pirin EP560_RS18125 PF03551 Transcriptional regulator PadR-like family EP560_RS18145 PF01909 Nucleotidyltransferase domain EP560_RS18145 PF13427 Domain of unknown function (DUF4111) EP560_RS18150 PF00117 Glutamine amidotransferase class-I EP560_RS18150 PF00958 GMP synthase C terminal domain EP560_RS18150 PF02540 NAD synthase EP560_RS18155 PF04286 Protein of unknown function (DUF445) EP560_RS18160 PF07681 DoxX EP560_RS18165 PF09335 SNARE associated Golgi protein EP560_RS18180 PF13614 AAA domain EP560_RS18190 PF01722 BolA-like protein EP560_RS18205 PF01648 4'-phosphopantetheinyl transferase superfamily EP560_RS18210 PF16363 GDP-mannose 4,6 dehydratase EP560_RS18230 PF02801 Beta-ketoacyl synthase, C-terminal domain EP560_RS18230 PF08242 Methyltransferase domain EP560_RS18230 PF16197 Ketoacyl-synthetase C-terminal extension EP560_RS18230 PF00550 Phosphopantetheine attachment site EP560_RS18230 PF14765 Polyketide synthase dehydratase EP560_RS18230 PF00109 Beta-ketoacyl synthase, N-terminal domain EP560_RS18230 PF00975 Thioesterase domain EP560_RS18235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS18235 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS18235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS18240 PF00501 AMP-binding enzyme EP560_RS18245 PF03472 Autoinducer binding domain EP560_RS18245 PF00196 Bacterial regulatory proteins, luxR family EP560_RS18255 PF00765 Autoinducer synthase EP560_RS18260 PF07690 Major Facilitator Superfamily EP560_RS18260 PF00083 Sugar (and other) transporter EP560_RS18265 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS18270 PF00378 Enoyl-CoA hydratase/isomerase EP560_RS18275 PF02770 Acyl-CoA dehydrogenase, middle domain EP560_RS18275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EP560_RS18275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EP560_RS18280 PF00501 AMP-binding enzyme EP560_RS18280 PF13193 AMP-binding enzyme C-terminal domain EP560_RS18285 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EP560_RS18285 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EP560_RS18290 PF00171 Aldehyde dehydrogenase family EP560_RS18300 PF00324 Amino acid permease EP560_RS18305 PF00324 Amino acid permease EP560_RS18310 PF01042 Endoribonuclease L-PSP EP560_RS18315 PF00842 Alanine racemase, C-terminal domain EP560_RS18315 PF01168 Alanine racemase, N-terminal domain EP560_RS18320 PF01266 FAD dependent oxidoreductase EP560_RS18325 PF01037 Lrp/AsnC ligand binding domain EP560_RS18335 PF00593 TonB dependent receptor EP560_RS18335 PF07715 TonB-dependent Receptor Plug Domain EP560_RS18350 PF00849 RNA pseudouridylate synthase EP560_RS18400 PF00694 Aconitase C-terminal domain EP560_RS18400 PF00330 Aconitase family (aconitate hydratase) EP560_RS18405 PF00285 Citrate synthase, C-terminal domain EP560_RS18415 PF00392 Bacterial regulatory proteins, gntR family EP560_RS18415 PF07729 FCD domain EP560_RS18425 PF00155 Aminotransferase class I and II EP560_RS18430 PF09330 D-lactate dehydrogenase, membrane binding EP560_RS18430 PF01565 FAD binding domain EP560_RS18435 PF01070 FMN-dependent dehydrogenase EP560_RS18440 PF00392 Bacterial regulatory proteins, gntR family EP560_RS18440 PF07729 FCD domain EP560_RS18445 PF02652 L-lactate permease EP560_RS18450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EP560_RS18450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EP560_RS18450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EP560_RS18450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EP560_RS18460 PF16363 GDP-mannose 4,6 dehydratase EP560_RS18465 PF00342 Phosphoglucose isomerase EP560_RS18470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP560_RS18470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP560_RS18470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP560_RS18475 PF00483 Nucleotidyl transferase EP560_RS18480 PF02397 Bacterial sugar transferase EP560_RS18485 PF00535 Glycosyl transferase family 2 EP560_RS18490 PF00534 Glycosyl transferases group 1 EP560_RS18505 PF00534 Glycosyl transferases group 1 EP560_RS18505 PF13439 Glycosyltransferase Family 4 EP560_RS18510 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS18510 PF12464 Maltose acetyltransferase EP560_RS18510 PF14602 Hexapeptide repeat of succinyl-transferase EP560_RS18520 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EP560_RS18525 PF00132 Bacterial transferase hexapeptide (six repeats) EP560_RS18530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EP560_RS18530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EP560_RS18535 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EP560_RS18535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EP560_RS18535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EP560_RS18540 PF02563 Polysaccharide biosynthesis/export protein EP560_RS18540 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EP560_RS18540 PF10531 SLBB domain EP560_RS18545 PF01451 Low molecular weight phosphotyrosine protein phosphatase EP560_RS18550 PF13807 G-rich domain on putative tyrosine kinase EP560_RS18550 PF02706 Chain length determinant protein EP560_RS18550 PF13614 AAA domain EP560_RS18555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_RS18555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP560_RS18560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EP560_RS18560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_RS18565 PF03023 Lipid II flippase MurJ EP560_RS18570 PF01510 N-acetylmuramoyl-L-alanine amidase EP560_RS18575 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EP560_RS18575 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EP560_RS18585 PF04185 Phosphoesterase family EP560_RS18585 PF05506 Domain of unknown function (DUF756) EP560_RS18590 PF03725 3' exoribonuclease family, domain 2 EP560_RS18590 PF01138 3' exoribonuclease family, domain 1 EP560_RS18595 PF00487 Fatty acid desaturase EP560_RS18600 PF00175 Oxidoreductase NAD-binding domain EP560_RS18605 PF00440 Bacterial regulatory proteins, tetR family EP560_RS18610 PF08360 QacR-like protein, C-terminal region EP560_RS18610 PF00440 Bacterial regulatory proteins, tetR family EP560_RS18615 PF01323 DSBA-like thioredoxin domain EP560_RS18625 PF13419 Haloacid dehalogenase-like hydrolase EP560_RS18630 PF00106 short chain dehydrogenase EP560_RS18645 PF00583 Acetyltransferase (GNAT) family EP560_RS18645 PF00696 Amino acid kinase family EP560_RS18650 PF09084 NMT1/THI5 like EP560_RS18655 PF09084 NMT1/THI5 like EP560_RS18660 PF00296 Luciferase-like monooxygenase EP560_RS18665 PF00528 Binding-protein-dependent transport system inner membrane component EP560_RS18670 PF00005 ABC transporter EP560_RS18675 PF08362 YcdC-like protein, C-terminal region EP560_RS18675 PF00440 Bacterial regulatory proteins, tetR family EP560_RS18680 PF01048 Phosphorylase superfamily EP560_RS18690 PF01687 Riboflavin kinase EP560_RS18690 PF06574 FAD synthetase EP560_RS18695 PF06827 Zinc finger found in FPG and IleRS EP560_RS18695 PF00133 tRNA synthetases class I (I, L, M and V) EP560_RS18695 PF08264 Anticodon-binding domain of tRNA EP560_RS18700 PF01252 Signal peptidase (SPase) II EP560_RS18705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EP560_RS18745 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EP560_RS18750 PF07859 alpha/beta hydrolase fold EP560_RS18775 PF01025 GrpE EP560_RS18780 PF00012 Hsp70 protein EP560_RS18800 PF13406 Transglycosylase SLT domain EP560_RS18805 PF02222 ATP-grasp domain EP560_RS18805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EP560_RS18810 PF00731 AIR carboxylase EP560_RS18825 PF01225 Mur ligase family, catalytic domain EP560_RS18825 PF08245 Mur ligase middle domain EP560_RS18825 PF02875 Mur ligase family, glutamate ligase domain EP560_RS18835 PF01569 PAP2 superfamily EP560_RS18840 PF03741 Integral membrane protein TerC family EP560_RS18850 PF03738 Glutathionylspermidine synthase preATP-grasp EP560_RS18855 PF00355 Rieske [2Fe-2S] domain EP560_RS18860 PF01979 Amidohydrolase family EP560_RS18865 PF00156 Phosphoribosyl transferase domain EP560_RS18875 PF10411 Disulfide bond isomerase protein N-terminus EP560_RS18875 PF13098 Thioredoxin-like domain EP560_RS18880 PF16916 Dimerisation domain of Zinc Transporter EP560_RS18880 PF01545 Cation efflux family EP560_RS18885 PF02583 Metal-sensitive transcriptional repressor EP560_RS18890 PF12631 MnmE helical domain EP560_RS18890 PF01926 50S ribosome-binding GTPase EP560_RS18890 PF10396 GTP-binding protein TrmE N-terminus EP560_RS18895 PF14849 YidC periplasmic domain EP560_RS18895 PF02096 60Kd inner membrane protein EP560_RS18900 PF01809 Putative membrane protein insertion efficiency factor EP560_RS18905 PF00825 Ribonuclease P EP560_RS18910 PF00468 Ribosomal protein L34 EP560_RS18935 PF01807 CHC2 zinc finger EP560_RS18935 PF08275 DNA primase catalytic core, N-terminal domain EP560_RS18935 PF10410 DnaB-helicase binding domain of primase EP560_RS18975 PF00625 Guanylate kinase EP560_RS19000 PF00589 Phage integrase family EP560_RS19000 PF02899 Phage integrase, N-terminal SAM-like domain EP560_RS19035 PF02811 PHP domain EP560_RS19035 PF07733 Bacterial DNA polymerase III alpha NTPase domain EP560_RS19035 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EP560_RS19035 PF14579 Helix-hairpin-helix motif EP560_RS19055 PF00154 recA bacterial DNA recombination protein EP560_RS19100 PF13476 AAA domain EP560_RS19125 PF02867 Ribonucleotide reductase, barrel domain EP560_RS19125 PF03477 ATP cone domain EP560_RS19125 PF00317 Ribonucleotide reductase, all-alpha domain EP560_RS19130 PF00268 Ribonucleotide reductase, small chain EP560_RS19155 PF00692 dUTPase EP560_RS19255 PF00929 Exonuclease EP560_RS19400 PF02195 ParB-like nuclease domain EP560_RS19405 PF09383 NIL domain EP560_RS19405 PF00005 ABC transporter EP560_RS19515 PF00877 NlpC/P60 family EP560_RS19595 PF00565 Staphylococcal nuclease homologue EP560_RS19605 PF00905 Penicillin binding protein transpeptidase domain EP560_RS19615 PF00816 H-NS histone family EP560_RS19670 PF13614 AAA domain EP560_RS19675 PF02195 ParB-like nuclease domain EP560_RS19675 PF17762 HTH domain found in ParB protein EP560_RS19695 PF05816 Toxic anion resistance protein (TelA) EP560_RS19800 PF00226 DnaJ domain EP560_RS19800 PF01556 DnaJ C terminal domain EP560_RS19800 PF00684 DnaJ central domain EP560_RS19835 PF18340 DNA relaxase TraI 2B/2B-like domain EP560_RS19835 PF07057 DNA helicase TraI EP560_RS19835 PF18272 single-stranded DNA binding TraI N-terminal subdomain EP560_RS19835 PF08751 TrwC relaxase EP560_RS19870 PF13936 Helix-turn-helix domain EP560_RS19870 PF00665 Integrase core domain EP560_RS19875 PF01636 Phosphotransferase enzyme family EP560_RS19880 PF13936 Helix-turn-helix domain EP560_RS19880 PF00665 Integrase core domain EP560_RS19895 PF02796 Helix-turn-helix domain of resolvase EP560_RS19895 PF00239 Resolvase, N terminal domain EP560_RS19910 PF01464 Transglycosylase SLT domain EP560_RS19945 PF10411 Disulfide bond isomerase protein N-terminus EP560_RS19945 PF13098 Thioredoxin-like domain EP560_RS19980 PF06834 TraU protein EP560_RS19990 PF06986 Type-1V conjugative transfer system mating pair stabilisation EP560_RS20005 PF06122 Conjugative relaxosome accessory transposon protein EP560_RS20025 PF00817 impB/mucB/samB family EP560_RS20025 PF11799 impB/mucB/samB family C-terminal domain EP560_RS20025 PF11798 IMS family HHH motif EP560_RS20025 PF13438 Domain of unknown function (DUF4113) EP560_RS20045 PF01051 Initiator Replication protein EP560_RS20070 PF07715 TonB-dependent Receptor Plug Domain EP560_RS20070 PF00593 TonB dependent receptor EP560_RS20080 PF13936 Helix-turn-helix domain EP560_RS20080 PF00665 Integrase core domain