locus-tag class description AYP_RS00005 PF00308 Bacterial dnaA protein AYP_RS00005 PF11638 DnaA N-terminal domain AYP_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AYP_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AYP_RS00010 PF02767 DNA polymerase III beta subunit, central domain AYP_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AYP_RS00015 PF02463 RecF/RecN/SMC N terminal domain AYP_RS00020 PF00204 DNA gyrase B AYP_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus AYP_RS00020 PF18053 DNA gyrase B subunit insert domain AYP_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS00020 PF01751 Toprim domain AYP_RS00030 PF09335 SNARE associated Golgi protein AYP_RS00035 PF00005 ABC transporter AYP_RS00035 PF12848 ABC transporter AYP_RS00055 PF01521 Iron-sulphur cluster biosynthesis AYP_RS00060 PF00561 alpha/beta hydrolase fold AYP_RS00065 PF03702 Anhydro-N-acetylmuramic acid kinase AYP_RS00070 PF00579 tRNA synthetases class I (W and Y) AYP_RS00115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_RS00120 PF01252 Signal peptidase (SPase) II AYP_RS00125 PF06827 Zinc finger found in FPG and IleRS AYP_RS00125 PF00133 tRNA synthetases class I (I, L, M and V) AYP_RS00125 PF08264 Anticodon-binding domain of tRNA AYP_RS00130 PF01687 Riboflavin kinase AYP_RS00130 PF06574 FAD synthetase AYP_RS00140 PF01048 Phosphorylase superfamily AYP_RS00145 PF08362 YcdC-like protein, C-terminal region AYP_RS00145 PF00440 Bacterial regulatory proteins, tetR family AYP_RS00150 PF00005 ABC transporter AYP_RS00155 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS00160 PF00296 Luciferase-like monooxygenase AYP_RS00165 PF09084 NMT1/THI5 like AYP_RS00170 PF09084 NMT1/THI5 like AYP_RS00175 PF00583 Acetyltransferase (GNAT) family AYP_RS00175 PF00696 Amino acid kinase family AYP_RS00190 PF00106 short chain dehydrogenase AYP_RS00195 PF13419 Haloacid dehalogenase-like hydrolase AYP_RS00205 PF01323 DSBA-like thioredoxin domain AYP_RS00210 PF00440 Bacterial regulatory proteins, tetR family AYP_RS00210 PF08360 QacR-like protein, C-terminal region AYP_RS00215 PF00440 Bacterial regulatory proteins, tetR family AYP_RS00220 PF00175 Oxidoreductase NAD-binding domain AYP_RS00225 PF00487 Fatty acid desaturase AYP_RS00230 PF01138 3' exoribonuclease family, domain 1 AYP_RS00230 PF03725 3' exoribonuclease family, domain 2 AYP_RS00250 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYP_RS00250 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYP_RS00255 PF01510 N-acetylmuramoyl-L-alanine amidase AYP_RS00260 PF03023 Lipid II flippase MurJ AYP_RS00265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_RS00265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYP_RS00270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_RS00270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AYP_RS00275 PF13614 AAA domain AYP_RS00275 PF02706 Chain length determinant protein AYP_RS00275 PF13807 G-rich domain on putative tyrosine kinase AYP_RS00280 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYP_RS00285 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AYP_RS00285 PF02563 Polysaccharide biosynthesis/export protein AYP_RS00285 PF10531 SLBB domain AYP_RS00290 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYP_RS00290 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYP_RS00290 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYP_RS00295 PF02719 Polysaccharide biosynthesis protein AYP_RS00300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYP_RS00305 PF02348 Cytidylyltransferase AYP_RS00320 PF08666 SAF domain AYP_RS00320 PF03102 NeuB family AYP_RS00350 PF00535 Glycosyl transferase family 2 AYP_RS00355 PF02397 Bacterial sugar transferase AYP_RS00360 PF00483 Nucleotidyl transferase AYP_RS00365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYP_RS00365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYP_RS00365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYP_RS00370 PF00342 Phosphoglucose isomerase AYP_RS00375 PF16363 GDP-mannose 4,6 dehydratase AYP_RS00380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_RS00380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_RS00380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_RS00380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_RS00385 PF02652 L-lactate permease AYP_RS00390 PF00392 Bacterial regulatory proteins, gntR family AYP_RS00390 PF07729 FCD domain AYP_RS00395 PF01070 FMN-dependent dehydrogenase AYP_RS00400 PF01565 FAD binding domain AYP_RS00400 PF09330 D-lactate dehydrogenase, membrane binding AYP_RS00405 PF00155 Aminotransferase class I and II AYP_RS00415 PF07729 FCD domain AYP_RS00415 PF00392 Bacterial regulatory proteins, gntR family AYP_RS00425 PF00285 Citrate synthase, C-terminal domain AYP_RS00430 PF00694 Aconitase C-terminal domain AYP_RS00430 PF00330 Aconitase family (aconitate hydratase) AYP_RS00470 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_RS00470 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_RS00480 PF08361 MAATS-type transcriptional repressor, C-terminal region AYP_RS00480 PF00440 Bacterial regulatory proteins, tetR family AYP_RS00495 PF00849 RNA pseudouridylate synthase AYP_RS00510 PF00593 TonB dependent receptor AYP_RS00510 PF07715 TonB-dependent Receptor Plug Domain AYP_RS00520 PF01037 Lrp/AsnC ligand binding domain AYP_RS00525 PF01266 FAD dependent oxidoreductase AYP_RS00530 PF00842 Alanine racemase, C-terminal domain AYP_RS00530 PF01168 Alanine racemase, N-terminal domain AYP_RS00535 PF01042 Endoribonuclease L-PSP AYP_RS00540 PF00324 Amino acid permease AYP_RS00545 PF00324 Amino acid permease AYP_RS00555 PF00171 Aldehyde dehydrogenase family AYP_RS00560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYP_RS00560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYP_RS00565 PF13193 AMP-binding enzyme C-terminal domain AYP_RS00565 PF00501 AMP-binding enzyme AYP_RS00570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS00570 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS00570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS00575 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS00580 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS00585 PF00083 Sugar (and other) transporter AYP_RS00585 PF07690 Major Facilitator Superfamily AYP_RS00590 PF00765 Autoinducer synthase AYP_RS00600 PF03472 Autoinducer binding domain AYP_RS00600 PF00196 Bacterial regulatory proteins, luxR family AYP_RS00605 PF00501 AMP-binding enzyme AYP_RS00610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS00610 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS00610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS00615 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_RS00615 PF08242 Methyltransferase domain AYP_RS00615 PF00550 Phosphopantetheine attachment site AYP_RS00615 PF14765 Polyketide synthase dehydratase AYP_RS00615 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_RS00615 PF00975 Thioesterase domain AYP_RS00615 PF16197 Ketoacyl-synthetase C-terminal extension AYP_RS00620 PF00550 Phosphopantetheine attachment site AYP_RS00620 PF00501 AMP-binding enzyme AYP_RS00620 PF13193 AMP-binding enzyme C-terminal domain AYP_RS00620 PF00668 Condensation domain AYP_RS00620 PF07993 Male sterility protein AYP_RS00625 PF00501 AMP-binding enzyme AYP_RS00625 PF00668 Condensation domain AYP_RS00625 PF00550 Phosphopantetheine attachment site AYP_RS00625 PF00975 Thioesterase domain AYP_RS00625 PF13193 AMP-binding enzyme C-terminal domain AYP_RS00640 PF12697 Alpha/beta hydrolase family AYP_RS00645 PF01648 4'-phosphopantetheinyl transferase superfamily AYP_RS00660 PF01722 BolA-like protein AYP_RS00670 PF13614 AAA domain AYP_RS00685 PF09335 SNARE associated Golgi protein AYP_RS00690 PF07681 DoxX AYP_RS00695 PF04286 Protein of unknown function (DUF445) AYP_RS00700 PF02540 NAD synthase AYP_RS00700 PF00117 Glutamine amidotransferase class-I AYP_RS00700 PF00958 GMP synthase C terminal domain AYP_RS00705 PF01909 Nucleotidyltransferase domain AYP_RS00705 PF13427 Domain of unknown function (DUF4111) AYP_RS00710 PF03551 Transcriptional regulator PadR-like family AYP_RS00720 PF02678 Pirin AYP_RS00720 PF05726 Pirin C-terminal cupin domain AYP_RS00740 PF03485 Arginyl tRNA synthetase N terminal domain AYP_RS00740 PF05746 DALR anticodon binding domain AYP_RS00740 PF00750 tRNA synthetases class I (R) AYP_RS00745 PF03949 Malic enzyme, NAD binding domain AYP_RS00745 PF00390 Malic enzyme, N-terminal domain AYP_RS00755 PF04261 Dyp-type peroxidase family AYP_RS00760 PF01810 LysE type translocator AYP_RS00765 PF00950 ABC 3 transport family AYP_RS00770 PF00005 ABC transporter AYP_RS00790 PF00119 ATP synthase A chain AYP_RS00795 PF00137 ATP synthase subunit C AYP_RS00800 PF00430 ATP synthase B/B' CF(0) AYP_RS00805 PF00213 ATP synthase delta (OSCP) subunit AYP_RS00810 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYP_RS00810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYP_RS00810 PF00306 ATP synthase alpha/beta chain, C terminal domain AYP_RS00815 PF00231 ATP synthase AYP_RS00820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYP_RS00820 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYP_RS00825 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYP_RS00835 PF00255 Glutathione peroxidase AYP_RS00845 PF07690 Major Facilitator Superfamily AYP_RS00850 PF00440 Bacterial regulatory proteins, tetR family AYP_RS00855 PF00892 EamA-like transporter family AYP_RS00860 PF01300 Telomere recombination AYP_RS00865 PF17782 DprA winged helix domain AYP_RS00865 PF02481 DNA recombination-mediator protein A AYP_RS00875 PF01327 Polypeptide deformylase AYP_RS00900 PF00440 Bacterial regulatory proteins, tetR family AYP_RS00935 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS00945 PF03358 NADPH-dependent FMN reductase AYP_RS00965 PF11842 Domain of unknown function (DUF3362) AYP_RS00965 PF04055 Radical SAM superfamily AYP_RS00965 PF08497 Radical SAM N-terminal AYP_RS00980 PF11798 IMS family HHH motif AYP_RS00980 PF11799 impB/mucB/samB family C-terminal domain AYP_RS00980 PF00817 impB/mucB/samB family AYP_RS00990 PF07690 Major Facilitator Superfamily AYP_RS00995 PF03641 Possible lysine decarboxylase AYP_RS01000 PF03741 Integral membrane protein TerC family AYP_RS01000 PF03471 Transporter associated domain AYP_RS01005 PF02810 SEC-C motif AYP_RS01010 PF03458 UPF0126 domain AYP_RS01015 PF07690 Major Facilitator Superfamily AYP_RS01020 PF03989 DNA gyrase C-terminal domain, beta-propeller AYP_RS01020 PF00521 DNA gyrase/topoisomerase IV, subunit A AYP_RS01025 PF13193 AMP-binding enzyme C-terminal domain AYP_RS01025 PF00501 AMP-binding enzyme AYP_RS01040 PF00719 Inorganic pyrophosphatase AYP_RS01045 PF03573 outer membrane porin, OprD family AYP_RS01055 PF00701 Dihydrodipicolinate synthetase family AYP_RS01065 PF00155 Aminotransferase class I and II AYP_RS01065 PF00392 Bacterial regulatory proteins, gntR family AYP_RS01070 PF01078 Magnesium chelatase, subunit ChlI AYP_RS01070 PF13335 Magnesium chelatase, subunit ChlI C-terminal AYP_RS01080 PF00665 Integrase core domain AYP_RS01105 PF00809 Pterin binding enzyme AYP_RS01110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_RS01110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_RS01110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_RS01110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_RS01125 PF00665 Integrase core domain AYP_RS01155 PF00582 Universal stress protein family AYP_RS01160 PF01740 STAS domain AYP_RS01160 PF00916 Sulfate permease family AYP_RS01170 PF07690 Major Facilitator Superfamily AYP_RS01175 PF02909 Tetracyclin repressor-like, C-terminal domain AYP_RS01175 PF00440 Bacterial regulatory proteins, tetR family AYP_RS01200 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AYP_RS01205 PF01636 Phosphotransferase enzyme family AYP_RS01215 PF01078 Magnesium chelatase, subunit ChlI AYP_RS01215 PF13335 Magnesium chelatase, subunit ChlI C-terminal AYP_RS01225 PF00543 Nitrogen regulatory protein P-II AYP_RS01230 PF00909 Ammonium Transporter Family AYP_RS01235 PF03477 ATP cone domain AYP_RS01240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYP_RS01240 PF01872 RibD C-terminal domain AYP_RS01250 PF00677 Lumazine binding domain AYP_RS01270 PF00883 Cytosol aminopeptidase family, catalytic domain AYP_RS01270 PF02789 Cytosol aminopeptidase family, N-terminal domain AYP_RS01280 PF03739 Lipopolysaccharide export system permease LptF/LptG AYP_RS01285 PF01676 Metalloenzyme superfamily AYP_RS01285 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYP_RS01290 PF03572 Peptidase family S41 AYP_RS01290 PF00595 PDZ domain AYP_RS01295 PF00158 Sigma-54 interaction domain AYP_RS01295 PF00072 Response regulator receiver domain AYP_RS01295 PF02954 Bacterial regulatory protein, Fis family AYP_RS01300 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS01305 PF00196 Bacterial regulatory proteins, luxR family AYP_RS01305 PF00072 Response regulator receiver domain AYP_RS01310 PF00768 D-alanyl-D-alanine carboxypeptidase AYP_RS01315 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS01320 PF00742 Homoserine dehydrogenase AYP_RS01320 PF03447 Homoserine dehydrogenase, NAD binding domain AYP_RS01320 PF01842 ACT domain AYP_RS01325 PF13098 Thioredoxin-like domain AYP_RS01325 PF10411 Disulfide bond isomerase protein N-terminus AYP_RS01330 PF02899 Phage integrase, N-terminal SAM-like domain AYP_RS01330 PF00589 Phage integrase family AYP_RS01340 PF02421 Ferrous iron transport protein B AYP_RS01340 PF07670 Nucleoside recognition AYP_RS01340 PF07664 Ferrous iron transport protein B C terminus AYP_RS01350 PF08245 Mur ligase middle domain AYP_RS01350 PF02875 Mur ligase family, glutamate ligase domain AYP_RS01355 PF01098 Cell cycle protein AYP_RS01360 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYP_RS01365 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYP_RS01370 PF00149 Calcineurin-like phosphoesterase AYP_RS01375 PF00293 NUDIX domain AYP_RS01380 PF13667 ThiC-associated domain AYP_RS01380 PF01964 Radical SAM ThiC family AYP_RS01400 PF02321 Outer membrane efflux protein AYP_RS01405 PF01895 PhoU domain AYP_RS01410 PF04362 Bacterial Fe(2+) trafficking AYP_RS01415 PF00206 Lyase AYP_RS01415 PF14698 Argininosuccinate lyase C-terminal AYP_RS01420 PF06580 Histidine kinase AYP_RS01420 PF07694 5TMR of 5TMR-LYT AYP_RS01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS01425 PF00072 Response regulator receiver domain AYP_RS01425 PF04397 LytTr DNA-binding domain AYP_RS01430 PF03900 Porphobilinogen deaminase, C-terminal domain AYP_RS01430 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYP_RS01455 PF00816 H-NS histone family AYP_RS01470 PF00263 Bacterial type II and III secretion system protein AYP_RS01470 PF03958 Bacterial type II/III secretion system short domain AYP_RS01475 PF12401 Protein of unknown function (DUF2662) AYP_RS01475 PF00498 FHA domain AYP_RS01480 PF13419 Haloacid dehalogenase-like hydrolase AYP_RS01485 PF00425 chorismate binding enzyme AYP_RS01485 PF04715 Anthranilate synthase component I, N terminal region AYP_RS01510 PF00009 Elongation factor Tu GTP binding domain AYP_RS01510 PF03144 Elongation factor Tu domain 2 AYP_RS01510 PF03143 Elongation factor Tu C-terminal domain AYP_RS01520 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AYP_RS01525 PF00467 KOW motif AYP_RS01525 PF02357 Transcription termination factor nusG AYP_RS01530 PF03946 Ribosomal protein L11, N-terminal domain AYP_RS01530 PF00298 Ribosomal protein L11, RNA binding domain AYP_RS01535 PF00687 Ribosomal protein L1p/L10e family AYP_RS01540 PF00466 Ribosomal protein L10 AYP_RS01545 PF00542 Ribosomal protein L7/L12 C-terminal domain AYP_RS01545 PF16320 Ribosomal protein L7/L12 dimerisation domain AYP_RS01550 PF00562 RNA polymerase Rpb2, domain 6 AYP_RS01550 PF10385 RNA polymerase beta subunit external 1 domain AYP_RS01550 PF04565 RNA polymerase Rpb2, domain 3 AYP_RS01550 PF04561 RNA polymerase Rpb2, domain 2 AYP_RS01550 PF04560 RNA polymerase Rpb2, domain 7 AYP_RS01550 PF04563 RNA polymerase beta subunit AYP_RS01555 PF00623 RNA polymerase Rpb1, domain 2 AYP_RS01555 PF04983 RNA polymerase Rpb1, domain 3 AYP_RS01555 PF05000 RNA polymerase Rpb1, domain 4 AYP_RS01555 PF04998 RNA polymerase Rpb1, domain 5 AYP_RS01555 PF04997 RNA polymerase Rpb1, domain 1 AYP_RS01585 PF00561 alpha/beta hydrolase fold AYP_RS01590 PF03553 Na+/H+ antiporter family AYP_RS01590 PF13726 Na+-H+ antiporter family AYP_RS01605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS01605 PF00183 Hsp90 protein AYP_RS01620 PF01323 DSBA-like thioredoxin domain AYP_RS01630 PF00376 MerR family regulatory protein AYP_RS01630 PF09278 MerR, DNA binding AYP_RS01650 PF02803 Thiolase, C-terminal domain AYP_RS01650 PF00108 Thiolase, N-terminal domain AYP_RS01655 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS01655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_RS01655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_RS01685 PF01541 GIY-YIG catalytic domain AYP_RS01685 PF02151 UvrB/uvrC motif AYP_RS01685 PF08459 UvrC Helix-hairpin-helix N-terminal AYP_RS01695 PF01066 CDP-alcohol phosphatidyltransferase AYP_RS01700 PF02805 Metal binding domain of Ada AYP_RS01700 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYP_RS01700 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYP_RS01700 PF12833 Helix-turn-helix domain AYP_RS01725 PF13533 Biotin-lipoyl like AYP_RS01730 PF03652 Holliday junction resolvase AYP_RS01735 PF02622 Uncharacterized ACR, COG1678 AYP_RS01740 PF02463 RecF/RecN/SMC N terminal domain AYP_RS01750 PF06865 Pyrimidine/purine nucleoside phosphorylase AYP_RS01755 PF00588 SpoU rRNA Methylase family AYP_RS01755 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYP_RS01765 PF01121 Dephospho-CoA kinase AYP_RS01770 PF01478 Type IV leader peptidase family AYP_RS01770 PF06750 Bacterial Peptidase A24 N-terminal domain AYP_RS01775 PF00482 Type II secretion system (T2SS), protein F AYP_RS01780 PF00437 Type II/IV secretion system protein AYP_RS01780 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYP_RS01785 PF00121 Triosephosphate isomerase AYP_RS01790 PF03840 Preprotein translocase SecG subunit AYP_RS01810 PF17384 RimP C-terminal SH3 domain AYP_RS01810 PF02576 RimP N-terminal domain AYP_RS01815 PF00575 S1 RNA binding domain AYP_RS01815 PF08529 NusA N-terminal domain AYP_RS01815 PF13184 NusA-like KH domain AYP_RS01820 PF11987 Translation-initiation factor 2 AYP_RS01820 PF08364 Bacterial translation initiation factor IF-2 associated region AYP_RS01820 PF04760 Translation initiation factor IF-2, N-terminal region AYP_RS01820 PF00009 Elongation factor Tu GTP binding domain AYP_RS01825 PF02033 Ribosome-binding factor A AYP_RS01830 PF03334 Na+/H+ antiporter subunit AYP_RS01835 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AYP_RS01840 PF01899 Na+/H+ ion antiporter subunit AYP_RS01845 PF00361 Proton-conducting membrane transporter AYP_RS01850 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYP_RS01855 PF13244 Domain of unknown function (DUF4040) AYP_RS01855 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AYP_RS01855 PF00361 Proton-conducting membrane transporter AYP_RS01855 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYP_RS01870 PF01502 Phosphoribosyl-AMP cyclohydrolase AYP_RS01875 PF01494 FAD binding domain AYP_RS01880 PF03109 ABC1 family AYP_RS01890 PF01209 ubiE/COQ5 methyltransferase family AYP_RS01900 PF03976 Polyphosphate kinase 2 (PPK2) AYP_RS01910 PF17946 RecC C-terminal domain AYP_RS01915 PF00580 UvrD/REP helicase N-terminal domain AYP_RS01915 PF13361 UvrD-like helicase C-terminal domain AYP_RS01915 PF12705 PD-(D/E)XK nuclease superfamily AYP_RS01920 PF13538 UvrD-like helicase C-terminal domain AYP_RS01925 PF00144 Beta-lactamase AYP_RS01930 PF00312 Ribosomal protein S15 AYP_RS01935 PF03725 3' exoribonuclease family, domain 2 AYP_RS01935 PF00575 S1 RNA binding domain AYP_RS01935 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYP_RS01935 PF00013 KH domain AYP_RS01935 PF01138 3' exoribonuclease family, domain 1 AYP_RS01940 PF01544 CorA-like Mg2+ transporter protein AYP_RS01950 PF00226 DnaJ domain AYP_RS01950 PF01556 DnaJ C terminal domain AYP_RS01960 PF01430 Hsp33 protein AYP_RS01965 PF00999 Sodium/hydrogen exchanger family AYP_RS01965 PF02254 TrkA-N domain AYP_RS01970 PF18074 Primosomal protein N C-terminal domain AYP_RS01970 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AYP_RS01970 PF17764 3′ DNA-binding domain (3′BD) AYP_RS01970 PF00270 DEAD/DEAH box helicase AYP_RS01970 PF00271 Helicase conserved C-terminal domain AYP_RS01975 PF00482 Type II secretion system (T2SS), protein F AYP_RS01980 PF08334 Type II secretion system (T2SS), protein G AYP_RS01980 PF07963 Prokaryotic N-terminal methylation motif AYP_RS01990 PF01588 Putative tRNA binding domain AYP_RS01995 PF00795 Carbon-nitrogen hydrolase AYP_RS02000 PF03471 Transporter associated domain AYP_RS02000 PF00571 CBS domain AYP_RS02005 PF01206 Sulfurtransferase TusA AYP_RS02020 PF01177 Asp/Glu/Hydantoin racemase AYP_RS02030 PF00762 Ferrochelatase AYP_RS02035 PF00753 Metallo-beta-lactamase superfamily AYP_RS02040 PF03884 DNA gyrase inhibitor YacG AYP_RS02060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AYP_RS02075 PF01197 Ribosomal protein L31 AYP_RS02080 PF03109 ABC1 family AYP_RS02085 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS02085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS02090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS02090 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS02090 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS02095 PF01554 MatE AYP_RS02105 PF06969 HemN C-terminal domain AYP_RS02105 PF04055 Radical SAM superfamily AYP_RS02110 PF00106 short chain dehydrogenase AYP_RS02115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS02115 PF03466 LysR substrate binding domain AYP_RS02130 PF00501 AMP-binding enzyme AYP_RS02130 PF13193 AMP-binding enzyme C-terminal domain AYP_RS02135 PF12111 Polyribonucleotide phosphorylase C terminal AYP_RS02135 PF10150 Ribonuclease E/G family AYP_RS02135 PF00575 S1 RNA binding domain AYP_RS02145 PF01479 S4 domain AYP_RS02145 PF00849 RNA pseudouridylate synthase AYP_RS02150 PF13419 Haloacid dehalogenase-like hydrolase AYP_RS02155 PF08279 HTH domain AYP_RS02155 PF13280 WYL domain AYP_RS02160 PF02798 Glutathione S-transferase, N-terminal domain AYP_RS02170 PF03466 LysR substrate binding domain AYP_RS02170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS02175 PF12706 Beta-lactamase superfamily domain AYP_RS02180 PF00141 Peroxidase AYP_RS02185 PF02896 PEP-utilising enzyme, TIM barrel domain AYP_RS02185 PF00391 PEP-utilising enzyme, mobile domain AYP_RS02185 PF05524 PEP-utilising enzyme, N-terminal AYP_RS02185 PF01590 GAF domain AYP_RS02190 PF00293 NUDIX domain AYP_RS02210 PF03466 LysR substrate binding domain AYP_RS02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS02220 PF00330 Aconitase family (aconitate hydratase) AYP_RS02225 PF00694 Aconitase C-terminal domain AYP_RS02235 PF00180 Isocitrate/isopropylmalate dehydrogenase AYP_RS02250 PF01176 Translation initiation factor 1A / IF-1 AYP_RS02260 PF01416 tRNA pseudouridine synthase AYP_RS02280 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYP_RS02280 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYP_RS02290 PF00375 Sodium:dicarboxylate symporter family AYP_RS02300 PF03279 Bacterial lipid A biosynthesis acyltransferase AYP_RS02305 PF01810 LysE type translocator AYP_RS02310 PF16326 ABC transporter C-terminal domain AYP_RS02310 PF12848 ABC transporter AYP_RS02310 PF00005 ABC transporter AYP_RS02315 PF04102 SlyX AYP_RS02320 PF00107 Zinc-binding dehydrogenase AYP_RS02320 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS02325 PF01638 HxlR-like helix-turn-helix AYP_RS02335 PF01396 Topoisomerase DNA binding C4 zinc finger AYP_RS02335 PF01751 Toprim domain AYP_RS02335 PF01131 DNA topoisomerase AYP_RS02335 PF08272 Topoisomerase I zinc-ribbon-like AYP_RS02350 PF13361 UvrD-like helicase C-terminal domain AYP_RS02350 PF00580 UvrD/REP helicase N-terminal domain AYP_RS02355 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AYP_RS02375 PF00999 Sodium/hydrogen exchanger family AYP_RS02375 PF02254 TrkA-N domain AYP_RS02380 PF00471 Ribosomal protein L33 AYP_RS02385 PF00830 Ribosomal L28 family AYP_RS02390 PF00171 Aldehyde dehydrogenase family AYP_RS02400 PF00551 Formyl transferase AYP_RS02400 PF01842 ACT domain AYP_RS02410 PF01618 MotA/TolQ/ExbB proton channel family AYP_RS02420 PF01625 Peptide methionine sulfoxide reductase AYP_RS02430 PF00186 Dihydrofolate reductase AYP_RS02435 PF00303 Thymidylate synthase AYP_RS02450 PF01790 Prolipoprotein diacylglyceryl transferase AYP_RS02470 PF00902 Sec-independent protein translocase protein (TatC) AYP_RS02475 PF02416 mttA/Hcf106 family AYP_RS02480 PF02416 mttA/Hcf106 family AYP_RS02490 PF01725 Ham1 family AYP_RS02500 PF00561 alpha/beta hydrolase fold AYP_RS02500 PF07021 Methionine biosynthesis protein MetW AYP_RS02505 PF00561 alpha/beta hydrolase fold AYP_RS02510 PF00682 HMGL-like AYP_RS02510 PF08502 LeuA allosteric (dimerisation) domain AYP_RS02515 PF13640 2OG-Fe(II) oxygenase superfamily AYP_RS02515 PF18331 PKHD-type hydroxylase C-terminal domain AYP_RS02520 PF00593 TonB dependent receptor AYP_RS02520 PF07715 TonB-dependent Receptor Plug Domain AYP_RS02525 PF05697 Bacterial trigger factor protein (TF) AYP_RS02525 PF05698 Bacterial trigger factor protein (TF) C-terminus AYP_RS02525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_RS02530 PF00574 Clp protease AYP_RS02535 PF07724 AAA domain (Cdc48 subfamily) AYP_RS02535 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_RS02535 PF06689 ClpX C4-type zinc finger AYP_RS02550 PF05683 Fumarase C-terminus AYP_RS02550 PF05681 Fumarate hydratase (Fumerase) AYP_RS02555 PF07085 DRTGG domain AYP_RS02555 PF01515 Phosphate acetyl/butaryl transferase AYP_RS02560 PF00871 Acetokinase family AYP_RS02570 PF00920 Dehydratase family AYP_RS02575 PF01081 KDPG and KHG aldolase AYP_RS02580 PF02447 GntP family permease AYP_RS02585 PF01202 Shikimate kinase AYP_RS02590 PF00171 Aldehyde dehydrogenase family AYP_RS02595 PF00171 Aldehyde dehydrogenase family AYP_RS02600 PF00561 alpha/beta hydrolase fold AYP_RS02610 PF00933 Glycosyl hydrolase family 3 N terminal domain AYP_RS02615 PF17804 Tail specific protease N-terminal domain AYP_RS02615 PF03572 Peptidase family S41 AYP_RS02615 PF00595 PDZ domain AYP_RS02615 PF11818 C-terminal domain of tail specific protease (DUF3340) AYP_RS02620 PF00534 Glycosyl transferases group 1 AYP_RS02620 PF13439 Glycosyltransferase Family 4 AYP_RS02625 PF01569 PAP2 superfamily AYP_RS02630 PF04384 Iron-sulphur cluster assembly AYP_RS02635 PF00334 Nucleoside diphosphate kinase AYP_RS02640 PF04055 Radical SAM superfamily AYP_RS02650 PF13464 Domain of unknown function (DUF4115) AYP_RS02655 PF04551 GcpE protein AYP_RS02660 PF03129 Anticodon binding domain AYP_RS02660 PF13393 Histidyl-tRNA synthetase AYP_RS02670 PF13360 PQQ-like domain AYP_RS02675 PF01926 50S ribosome-binding GTPase AYP_RS02675 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYP_RS02690 PF00550 Phosphopantetheine attachment site AYP_RS02695 PF00550 Phosphopantetheine attachment site AYP_RS02705 PF00501 AMP-binding enzyme AYP_RS02705 PF13193 AMP-binding enzyme C-terminal domain AYP_RS02720 PF00221 Aromatic amino acid lyase AYP_RS02740 PF04820 Tryptophan halogenase AYP_RS02750 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_RS02750 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_RS02765 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_RS02765 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_RS02780 PF02556 Preprotein translocase subunit SecB AYP_RS02785 PF00462 Glutaredoxin AYP_RS02795 PF03193 RsgA GTPase AYP_RS02800 PF00929 Exonuclease AYP_RS02815 PF02321 Outer membrane efflux protein AYP_RS02820 PF12704 MacB-like periplasmic core domain AYP_RS02820 PF02687 FtsX-like permease family AYP_RS02820 PF00005 ABC transporter AYP_RS02825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_RS02840 PF09334 tRNA synthetases class I (M) AYP_RS02840 PF13603 Leucyl-tRNA synthetase, Domain 2 AYP_RS02840 PF00133 tRNA synthetases class I (I, L, M and V) AYP_RS02840 PF08264 Anticodon-binding domain of tRNA AYP_RS02850 PF00205 Thiamine pyrophosphate enzyme, central domain AYP_RS02850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYP_RS02850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYP_RS02855 PF10369 Small subunit of acetolactate synthase AYP_RS02860 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYP_RS02860 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AYP_RS02865 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS02865 PF03707 Bacterial signalling protein N terminal repeat AYP_RS02865 PF00563 EAL domain AYP_RS02890 PF16658 Class II release factor RF3, C-terminal domain AYP_RS02890 PF03144 Elongation factor Tu domain 2 AYP_RS02890 PF00009 Elongation factor Tu GTP binding domain AYP_RS02905 PF01026 TatD related DNase AYP_RS02910 PF00694 Aconitase C-terminal domain AYP_RS02910 PF00330 Aconitase family (aconitate hydratase) AYP_RS02920 PF00899 ThiF family AYP_RS02930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS02930 PF03466 LysR substrate binding domain AYP_RS02940 PF01207 Dihydrouridine synthase (Dus) AYP_RS02945 PF07690 Major Facilitator Superfamily AYP_RS02955 PF00892 EamA-like transporter family AYP_RS02960 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AYP_RS02960 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AYP_RS02965 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AYP_RS02970 PF02233 NAD(P) transhydrogenase beta subunit AYP_RS02975 PF00106 short chain dehydrogenase AYP_RS02985 PF01261 Xylose isomerase-like TIM barrel AYP_RS03005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYP_RS03005 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYP_RS03010 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS03015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS03015 PF00672 HAMP domain AYP_RS03015 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS03015 PF01627 Hpt domain AYP_RS03015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYP_RS03015 PF00072 Response regulator receiver domain AYP_RS03020 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS03030 PF05958 tRNA (Uracil-5-)-methyltransferase AYP_RS03035 PF04607 Region found in RelA / SpoT proteins AYP_RS03035 PF02824 TGS domain AYP_RS03035 PF13291 ACT domain AYP_RS03045 PF03819 MazG nucleotide pyrophosphohydrolase domain AYP_RS03055 PF01743 Poly A polymerase head domain AYP_RS03055 PF12627 Probable RNA and SrmB- binding site of polymerase A AYP_RS03055 PF12626 Polymerase A arginine-rich C-terminus AYP_RS03060 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYP_RS03065 PF02548 Ketopantoate hydroxymethyltransferase AYP_RS03070 PF02569 Pantoate-beta-alanine ligase AYP_RS03075 PF03668 P-loop ATPase protein family AYP_RS03080 PF00381 PTS HPr component phosphorylation site AYP_RS03085 PF04751 Protein of unknown function (DUF615) AYP_RS03090 PF00501 AMP-binding enzyme AYP_RS03090 PF13193 AMP-binding enzyme C-terminal domain AYP_RS03095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYP_RS03095 PF03129 Anticodon binding domain AYP_RS03095 PF02824 TGS domain AYP_RS03095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYP_RS03100 PF05198 Translation initiation factor IF-3, N-terminal domain AYP_RS03100 PF00707 Translation initiation factor IF-3, C-terminal domain AYP_RS03110 PF00043 Glutathione S-transferase, C-terminal domain AYP_RS03110 PF02798 Glutathione S-transferase, N-terminal domain AYP_RS03115 PF09335 SNARE associated Golgi protein AYP_RS03120 PF07690 Major Facilitator Superfamily AYP_RS03125 PF01632 Ribosomal protein L35 AYP_RS03130 PF00453 Ribosomal protein L20 AYP_RS03150 PF01409 tRNA synthetases class II core domain (F) AYP_RS03150 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYP_RS03155 PF01588 Putative tRNA binding domain AYP_RS03155 PF03147 Ferredoxin-fold anticodon binding domain AYP_RS03155 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AYP_RS03155 PF03484 tRNA synthetase B5 domain AYP_RS03155 PF03483 B3/4 domain AYP_RS03160 PF00216 Bacterial DNA-binding protein AYP_RS03175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYP_RS03175 PF07497 Rho termination factor, RNA-binding domain AYP_RS03175 PF07498 Rho termination factor, N-terminal domain AYP_RS03180 PF00085 Thioredoxin AYP_RS03185 PF02541 Ppx/GppA phosphatase family AYP_RS03190 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYP_RS03195 PF11734 TilS substrate C-terminal domain AYP_RS03195 PF09179 TilS substrate binding domain AYP_RS03195 PF01171 PP-loop family AYP_RS03200 PF03807 NADP oxidoreductase coenzyme F420-dependent AYP_RS03200 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYP_RS03205 PF02325 YGGT family AYP_RS03210 PF01612 3'-5' exonuclease AYP_RS03210 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYP_RS03210 PF01367 5'-3' exonuclease, C-terminal SAM fold AYP_RS03210 PF00476 DNA polymerase family A AYP_RS03230 PF00437 Type II/IV secretion system protein AYP_RS03235 PF02566 OsmC-like protein AYP_RS03240 PF01047 MarR family AYP_RS03250 PF00795 Carbon-nitrogen hydrolase AYP_RS03295 PF04552 Sigma-54, DNA binding domain AYP_RS03295 PF04963 Sigma-54 factor, core binding domain AYP_RS03295 PF00309 Sigma-54 factor, Activator interacting domain (AID) AYP_RS03300 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYP_RS03305 PF01722 BolA-like protein AYP_RS03310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYP_RS03315 PF01634 ATP phosphoribosyltransferase AYP_RS03320 PF00815 Histidinol dehydrogenase AYP_RS03325 PF00155 Aminotransferase class I and II AYP_RS03330 PF00425 chorismate binding enzyme AYP_RS03330 PF04715 Anthranilate synthase component I, N terminal region AYP_RS03370 PF00293 NUDIX domain AYP_RS03375 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS03380 PF00814 Glycoprotease family AYP_RS03385 PF04445 Putative SAM-dependent methyltransferase AYP_RS03395 PF00756 Putative esterase AYP_RS03405 PF00834 Ribulose-phosphate 3 epimerase family AYP_RS03420 PF07732 Multicopper oxidase AYP_RS03420 PF00394 Multicopper oxidase AYP_RS03420 PF07731 Multicopper oxidase AYP_RS03425 PF05275 Copper resistance protein B precursor (CopB) AYP_RS03435 PF00893 Small Multidrug Resistance protein AYP_RS03440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYP_RS03440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYP_RS03445 PF01960 ArgJ family AYP_RS03450 PF02445 Quinolinate synthetase A protein AYP_RS03475 PF00962 Adenosine/AMP deaminase AYP_RS03480 PF00107 Zinc-binding dehydrogenase AYP_RS03480 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS03485 PF03466 LysR substrate binding domain AYP_RS03490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS03490 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS03490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS03495 PF07690 Major Facilitator Superfamily AYP_RS03500 PF02515 CoA-transferase family III AYP_RS03510 PF00890 FAD binding domain AYP_RS03510 PF14537 Cytochrome c3 AYP_RS03515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS03515 PF03466 LysR substrate binding domain AYP_RS03525 PF07690 Major Facilitator Superfamily AYP_RS03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS03535 PF03466 LysR substrate binding domain AYP_RS03545 PF07687 Peptidase dimerisation domain AYP_RS03545 PF01546 Peptidase family M20/M25/M40 AYP_RS03550 PF12833 Helix-turn-helix domain AYP_RS03550 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYP_RS03560 PF01810 LysE type translocator AYP_RS03565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS03565 PF03466 LysR substrate binding domain AYP_RS03575 PF01717 Cobalamin-independent synthase, Catalytic domain AYP_RS03575 PF08267 Cobalamin-independent synthase, N-terminal domain AYP_RS03580 PF01613 Flavin reductase like domain AYP_RS03610 PF02567 Phenazine biosynthesis-like protein AYP_RS03630 PF01011 PQQ enzyme repeat AYP_RS03630 PF13360 PQQ-like domain AYP_RS03700 PF00672 HAMP domain AYP_RS03700 PF13756 Stimulus-sensing domain AYP_RS03700 PF13755 Sensor N-terminal transmembrane domain AYP_RS03700 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS03700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS03710 PF00268 Ribonucleotide reductase, small chain AYP_RS03720 PF00317 Ribonucleotide reductase, all-alpha domain AYP_RS03720 PF02867 Ribonucleotide reductase, barrel domain AYP_RS03720 PF03477 ATP cone domain AYP_RS03730 PF00486 Transcriptional regulatory protein, C terminal AYP_RS03730 PF00072 Response regulator receiver domain AYP_RS03735 PF00672 HAMP domain AYP_RS03735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS03735 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS03745 PF17151 Periplasmic sensor domain AYP_RS03745 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS03750 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYP_RS03755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYP_RS03760 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYP_RS03760 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYP_RS03770 PF10531 SLBB domain AYP_RS03770 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYP_RS03770 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYP_RS03775 PF00384 Molybdopterin oxidoreductase AYP_RS03775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYP_RS03775 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYP_RS03780 PF00146 NADH dehydrogenase AYP_RS03785 PF12838 4Fe-4S dicluster domain AYP_RS03790 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYP_RS03795 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYP_RS03800 PF00361 Proton-conducting membrane transporter AYP_RS03800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYP_RS03805 PF00361 Proton-conducting membrane transporter AYP_RS03810 PF00361 Proton-conducting membrane transporter AYP_RS03820 PF00313 'Cold-shock' DNA-binding domain AYP_RS03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS03825 PF03466 LysR substrate binding domain AYP_RS03830 PF00175 Oxidoreductase NAD-binding domain AYP_RS03830 PF00970 Oxidoreductase FAD-binding domain AYP_RS03845 PF05552 Conserved TM helix AYP_RS03860 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS03865 PF13533 Biotin-lipoyl like AYP_RS03890 PF09334 tRNA synthetases class I (M) AYP_RS03890 PF01588 Putative tRNA binding domain AYP_RS03900 PF10609 NUBPL iron-transfer P-loop NTPase AYP_RS03910 PF01048 Phosphorylase superfamily AYP_RS03925 PF00692 dUTPase AYP_RS03960 PF01207 Dihydrouridine synthase (Dus) AYP_RS03970 PF02978 Signal peptide binding domain AYP_RS03970 PF02881 SRP54-type protein, helical bundle domain AYP_RS03970 PF00448 SRP54-type protein, GTPase domain AYP_RS03975 PF03309 Type III pantothenate kinase AYP_RS03985 PF01925 Sulfite exporter TauE/SafE AYP_RS03995 PF06470 SMC proteins Flexible Hinge Domain AYP_RS03995 PF02463 RecF/RecN/SMC N terminal domain AYP_RS04005 PF00533 BRCA1 C Terminus (BRCT) domain AYP_RS04005 PF03120 NAD-dependent DNA ligase OB-fold domain AYP_RS04005 PF01653 NAD-dependent DNA ligase adenylation domain AYP_RS04005 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYP_RS04005 PF12826 Helix-hairpin-helix motif AYP_RS04010 PF00210 Ferritin-like domain AYP_RS04015 PF07690 Major Facilitator Superfamily AYP_RS04020 PF00982 Glycosyltransferase family 20 AYP_RS04025 PF02358 Trehalose-phosphatase AYP_RS04030 PF12697 Alpha/beta hydrolase family AYP_RS04030 PF08241 Methyltransferase domain AYP_RS04035 PF04055 Radical SAM superfamily AYP_RS04035 PF06968 Biotin and Thiamin Synthesis associated domain AYP_RS04035 PF00202 Aminotransferase class-III AYP_RS04040 PF00155 Aminotransferase class I and II AYP_RS04055 PF01479 S4 domain AYP_RS04055 PF00849 RNA pseudouridylate synthase AYP_RS04060 PF04079 Segregation and condensation complex subunit ScpB AYP_RS04065 PF02616 Segregation and condensation protein ScpA AYP_RS04070 PF01300 Telomere recombination AYP_RS04075 PF04315 Elongation factor P hydroxylase AYP_RS04080 PF02620 Large ribosomal RNA subunit accumulation protein YceD AYP_RS04085 PF01783 Ribosomal L32p protein family AYP_RS04090 PF00698 Acyl transferase domain AYP_RS04100 PF00550 Phosphopantetheine attachment site AYP_RS04105 PF04972 BON domain AYP_RS04105 PF01476 LysM domain AYP_RS04110 PF08543 Phosphomethylpyrimidine kinase AYP_RS04110 PF03070 TENA/THI-4/PQQC family AYP_RS04110 PF02581 Thiamine monophosphate synthase AYP_RS04120 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYP_RS04135 PF02261 Aspartate decarboxylase AYP_RS04140 PF01195 Peptidyl-tRNA hydrolase AYP_RS04145 PF01386 Ribosomal L25p family AYP_RS04150 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYP_RS04150 PF14572 Phosphoribosyl synthetase-associated domain AYP_RS04175 PF08544 GHMP kinases C terminal AYP_RS04175 PF00288 GHMP kinases N terminal domain AYP_RS04180 PF03550 Outer membrane lipoprotein LolB AYP_RS04190 PF01488 Shikimate / quinate 5-dehydrogenase AYP_RS04190 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AYP_RS04190 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AYP_RS04195 PF01807 CHC2 zinc finger AYP_RS04195 PF08278 DNA primase DnaG DnaB-binding AYP_RS04195 PF08275 DNA primase catalytic core, N-terminal domain AYP_RS04195 PF10410 DnaB-helicase binding domain of primase AYP_RS04200 PF13525 Outer membrane lipoprotein AYP_RS04205 PF01479 S4 domain AYP_RS04205 PF00849 RNA pseudouridylate synthase AYP_RS04210 PF02578 Multi-copper polyphenol oxidoreductase laccase AYP_RS04215 PF03358 NADPH-dependent FMN reductase AYP_RS04220 PF01668 SmpB protein AYP_RS04225 PF01467 Cytidylyltransferase-like AYP_RS04230 PF00037 4Fe-4S binding domain AYP_RS04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS04250 PF03466 LysR substrate binding domain AYP_RS04255 PF00180 Isocitrate/isopropylmalate dehydrogenase AYP_RS04260 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_RS04265 PF07859 alpha/beta hydrolase fold AYP_RS04270 PF00355 Rieske [2Fe-2S] domain AYP_RS04270 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_RS04275 PF00171 Aldehyde dehydrogenase family AYP_RS04280 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS04280 PF00175 Oxidoreductase NAD-binding domain AYP_RS04280 PF00970 Oxidoreductase FAD-binding domain AYP_RS04295 PF00795 Carbon-nitrogen hydrolase AYP_RS04295 PF02540 NAD synthase AYP_RS04305 PF05726 Pirin C-terminal cupin domain AYP_RS04305 PF02678 Pirin AYP_RS04310 PF03653 Uncharacterised protein family (UPF0093) AYP_RS04315 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_RS04315 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_RS04325 PF00164 Ribosomal protein S12/S23 AYP_RS04330 PF00177 Ribosomal protein S7p/S5e AYP_RS04335 PF00679 Elongation factor G C-terminus AYP_RS04335 PF14492 Elongation Factor G, domain II AYP_RS04335 PF03764 Elongation factor G, domain IV AYP_RS04335 PF03144 Elongation factor Tu domain 2 AYP_RS04335 PF00009 Elongation factor Tu GTP binding domain AYP_RS04340 PF00009 Elongation factor Tu GTP binding domain AYP_RS04340 PF03144 Elongation factor Tu domain 2 AYP_RS04340 PF03143 Elongation factor Tu C-terminal domain AYP_RS04355 PF00583 Acetyltransferase (GNAT) family AYP_RS04360 PF04376 Arginine-tRNA-protein transferase, N terminus AYP_RS04360 PF04377 Arginine-tRNA-protein transferase, C terminus AYP_RS04365 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AYP_RS04370 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS04375 PF09397 Ftsk gamma domain AYP_RS04375 PF01580 FtsK/SpoIIIE family AYP_RS04375 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AYP_RS04375 PF17854 FtsK alpha domain AYP_RS04380 PF01810 LysE type translocator AYP_RS04395 PF03776 Septum formation topological specificity factor MinE AYP_RS04400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYP_RS04405 PF03775 Septum formation inhibitor MinC, C-terminal domain AYP_RS04415 PF01553 Acyltransferase AYP_RS04420 PF13488 Glycine zipper AYP_RS04420 PF00691 OmpA family AYP_RS04425 PF13361 UvrD-like helicase C-terminal domain AYP_RS04425 PF00580 UvrD/REP helicase N-terminal domain AYP_RS04430 PF00692 dUTPase AYP_RS04435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_RS04435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_RS04435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_RS04435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_RS04440 PF00696 Amino acid kinase family AYP_RS04450 PF13230 Glutamine amidotransferases class-II AYP_RS04455 PF01814 Hemerythrin HHE cation binding domain AYP_RS04470 PF03658 RnfH family Ubiquitin AYP_RS04475 PF04355 SmpA / OmlA family AYP_RS04480 PF01475 Ferric uptake regulator family AYP_RS04485 PF00437 Type II/IV secretion system protein AYP_RS04490 PF00437 Type II/IV secretion system protein AYP_RS04495 PF01168 Alanine racemase, N-terminal domain AYP_RS04505 PF12320 Type 5 capsule protein repressor C-terminal domain AYP_RS04505 PF00149 Calcineurin-like phosphoesterase AYP_RS04525 PF08338 Domain of unknown function (DUF1731) AYP_RS04525 PF01370 NAD dependent epimerase/dehydratase family AYP_RS04530 PF01266 FAD dependent oxidoreductase AYP_RS04535 PF00490 Delta-aminolevulinic acid dehydratase AYP_RS04540 PF03061 Thioesterase superfamily AYP_RS04545 PF13533 Biotin-lipoyl like AYP_RS04550 PF07690 Major Facilitator Superfamily AYP_RS04605 PF00083 Sugar (and other) transporter AYP_RS04610 PF00701 Dihydrodipicolinate synthetase family AYP_RS04635 PF13520 Amino acid permease AYP_RS04640 PF02574 Homocysteine S-methyltransferase AYP_RS04650 PF06039 Malate:quinone oxidoreductase (Mqo) AYP_RS04655 PF00732 GMC oxidoreductase AYP_RS04655 PF05199 GMC oxidoreductase AYP_RS04660 PF00171 Aldehyde dehydrogenase family AYP_RS04665 PF00440 Bacterial regulatory proteins, tetR family AYP_RS04665 PF13977 BetI-type transcriptional repressor, C-terminal AYP_RS04670 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_RS04675 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_RS04685 PF03061 Thioesterase superfamily AYP_RS04695 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYP_RS04695 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYP_RS04700 PF00375 Sodium:dicarboxylate symporter family AYP_RS04705 PF07152 YaeQ protein AYP_RS04710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_RS04715 PF14883 Hypothetical glycosyl hydrolase family 13 AYP_RS04715 PF01522 Polysaccharide deacetylase AYP_RS04720 PF00535 Glycosyl transferase family 2 AYP_RS04730 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS04745 PF01614 Bacterial transcriptional regulator AYP_RS04745 PF09339 IclR helix-turn-helix domain AYP_RS04750 PF00355 Rieske [2Fe-2S] domain AYP_RS04760 PF00355 Rieske [2Fe-2S] domain AYP_RS04770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_RS04775 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS04775 PF14759 Reductase C-terminal AYP_RS04780 PF07690 Major Facilitator Superfamily AYP_RS04790 PF12697 Alpha/beta hydrolase family AYP_RS04800 PF01958 Domain of unknown function DUF108 AYP_RS04800 PF03447 Homoserine dehydrogenase, NAD binding domain AYP_RS04805 PF00171 Aldehyde dehydrogenase family AYP_RS04810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYP_RS04810 PF00205 Thiamine pyrophosphate enzyme, central domain AYP_RS04810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYP_RS04820 PF07690 Major Facilitator Superfamily AYP_RS04825 PF01327 Polypeptide deformylase AYP_RS04830 PF04960 Glutaminase AYP_RS04835 PF02311 AraC-like ligand binding domain AYP_RS04835 PF12833 Helix-turn-helix domain AYP_RS04840 PF07690 Major Facilitator Superfamily AYP_RS04845 PF01263 Aldose 1-epimerase AYP_RS04860 PF03466 LysR substrate binding domain AYP_RS04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS04870 PF07690 Major Facilitator Superfamily AYP_RS04875 PF00456 Transketolase, thiamine diphosphate binding domain AYP_RS04880 PF02780 Transketolase, C-terminal domain AYP_RS04880 PF02779 Transketolase, pyrimidine binding domain AYP_RS04885 PF02574 Homocysteine S-methyltransferase AYP_RS04885 PF00809 Pterin binding enzyme AYP_RS04885 PF02965 Vitamin B12 dependent methionine synthase, activation domain AYP_RS04885 PF02607 B12 binding domain AYP_RS04885 PF02310 B12 binding domain AYP_RS04890 PF01384 Phosphate transporter family AYP_RS04895 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS04910 PF03781 Sulfatase-modifying factor enzyme 1 AYP_RS04915 PF00884 Sulfatase AYP_RS04925 PF01106 NifU-like domain AYP_RS04925 PF01521 Iron-sulphur cluster biosynthesis AYP_RS04930 PF07715 TonB-dependent Receptor Plug Domain AYP_RS04930 PF00593 TonB dependent receptor AYP_RS04940 PF00561 alpha/beta hydrolase fold AYP_RS04945 PF00484 Carbonic anhydrase AYP_RS04950 PF13472 GDSL-like Lipase/Acylhydrolase family AYP_RS04955 PF00005 ABC transporter AYP_RS04965 PF01694 Rhomboid family AYP_RS04970 PF00912 Transglycosylase AYP_RS04975 PF02503 Polyphosphate kinase middle domain AYP_RS04975 PF13090 Polyphosphate kinase C-terminal domain 2 AYP_RS04975 PF17941 Polyphosphate kinase C-terminal domain 1 AYP_RS04975 PF13089 Polyphosphate kinase N-terminal domain AYP_RS04990 PF03466 LysR substrate binding domain AYP_RS04990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS04995 PF00561 alpha/beta hydrolase fold AYP_RS05000 PF18113 Rubredoxin binding C-terminal domain AYP_RS05000 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS05005 PF00301 Rubredoxin AYP_RS05020 PF01336 OB-fold nucleic acid binding domain AYP_RS05020 PF00152 tRNA synthetases class II (D, K and N) AYP_RS05025 PF14052 Capsule assembly protein Wzi AYP_RS05035 PF01507 Phosphoadenosine phosphosulfate reductase family AYP_RS05040 PF00009 Elongation factor Tu GTP binding domain AYP_RS05055 PF03600 Citrate transporter AYP_RS05065 PF01595 Cyclin M transmembrane N-terminal domain AYP_RS05065 PF00571 CBS domain AYP_RS05065 PF03471 Transporter associated domain AYP_RS05070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS05070 PF03466 LysR substrate binding domain AYP_RS05075 PF00463 Isocitrate lyase family AYP_RS05090 PF01774 UreD urease accessory protein AYP_RS05095 PF00547 Urease, gamma subunit AYP_RS05100 PF00699 Urease beta subunit AYP_RS05110 PF02814 UreE urease accessory protein, N-terminal domain AYP_RS05110 PF05194 UreE urease accessory protein, C-terminal domain AYP_RS05115 PF01730 UreF AYP_RS05120 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYP_RS05135 PF00905 Penicillin binding protein transpeptidase domain AYP_RS05135 PF03717 Penicillin-binding Protein dimerisation domain AYP_RS05150 PF05191 Adenylate kinase, active site lid AYP_RS05160 PF10576 Iron-sulfur binding domain of endonuclease III AYP_RS05160 PF00730 HhH-GPD superfamily base excision DNA repair protein AYP_RS05160 PF00633 Helix-hairpin-helix motif AYP_RS05165 PF04060 Putative Fe-S cluster AYP_RS05170 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYP_RS05170 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYP_RS05180 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AYP_RS05185 PF02590 Predicted SPOUT methyltransferase AYP_RS05195 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYP_RS05195 PF05362 Lon protease (S16) C-terminal proteolytic domain AYP_RS05195 PF00004 ATPase family associated with various cellular activities (AAA) AYP_RS05200 PF05662 Coiled stalk of trimeric autotransporter adhesin AYP_RS05200 PF05658 Head domain of trimeric autotransporter adhesin AYP_RS05200 PF03895 YadA-like membrane anchor domain AYP_RS05200 PF13018 Extended Signal Peptide of Type V secretion system AYP_RS05205 PF00691 OmpA family AYP_RS05205 PF04355 SmpA / OmlA family AYP_RS05210 PF01812 5-formyltetrahydrofolate cyclo-ligase family AYP_RS05535 PF01476 LysM domain AYP_RS05535 PF01551 Peptidase family M23 AYP_RS05535 PF08525 Opacity-associated protein A N-terminal motif AYP_RS05580 PF00884 Sulfatase AYP_RS05580 PF08019 Phosphoethanolamine transferase EptA/EptB AYP_RS05615 PF00557 Metallopeptidase family M24 AYP_RS05615 PF05195 Aminopeptidase P, N-terminal domain AYP_RS05620 PF01494 FAD binding domain AYP_RS05625 PF01494 FAD binding domain AYP_RS05635 PF13411 MerR HTH family regulatory protein AYP_RS05645 PF01810 LysE type translocator AYP_RS05650 PF03466 LysR substrate binding domain AYP_RS05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS05660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYP_RS05665 PF02021 Uncharacterised protein family UPF0102 AYP_RS05670 PF04972 BON domain AYP_RS05680 PF00293 NUDIX domain AYP_RS05680 PF09297 NADH pyrophosphatase zinc ribbon domain AYP_RS05690 PF00929 Exonuclease AYP_RS05695 PF01464 Transglycosylase SLT domain AYP_RS05695 PF01476 LysM domain AYP_RS05695 PF01464 Transglycosylase SLT domain AYP_RS05695 PF01476 LysM domain AYP_RS05700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYP_RS05705 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS05710 PF12911 N-terminal TM domain of oligopeptide transport permease C AYP_RS05710 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS05715 PF00005 ABC transporter AYP_RS05715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYP_RS05720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS05720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_RS05725 PF07715 TonB-dependent Receptor Plug Domain AYP_RS05725 PF00593 TonB dependent receptor AYP_RS05735 PF00929 Exonuclease AYP_RS05740 PF01979 Amidohydrolase family AYP_RS05745 PF00360 Phytochrome region AYP_RS05745 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS05745 PF00563 EAL domain AYP_RS05745 PF01590 GAF domain AYP_RS05750 PF00764 Arginosuccinate synthase AYP_RS05755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_RS05755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS05770 PF05987 Bacterial protein of unknown function (DUF898) AYP_RS05775 PF03180 NLPA lipoprotein AYP_RS05795 PF13610 DDE domain AYP_RS05815 PF13610 DDE domain AYP_RS05820 PF13411 MerR HTH family regulatory protein AYP_RS05825 PF00403 Heavy-metal-associated domain AYP_RS05825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_RS05825 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS05830 PF03203 MerC mercury resistance protein AYP_RS05835 PF00403 Heavy-metal-associated domain AYP_RS05840 PF02411 MerT mercuric transport protein AYP_RS05845 PF00376 MerR family regulatory protein AYP_RS05845 PF09278 MerR, DNA binding AYP_RS05850 PF00665 Integrase core domain AYP_RS05855 PF01695 IstB-like ATP binding protein AYP_RS05870 PF00809 Pterin binding enzyme AYP_RS05875 PF00893 Small Multidrug Resistance protein AYP_RS05885 PF13610 DDE domain AYP_RS05890 PF00589 Phage integrase family AYP_RS05890 PF13495 Phage integrase, N-terminal SAM-like domain AYP_RS05895 PF00583 Acetyltransferase (GNAT) family AYP_RS05910 PF13610 DDE domain AYP_RS05925 PF00239 Resolvase, N terminal domain AYP_RS05925 PF02796 Helix-turn-helix domain of resolvase AYP_RS05940 PF13610 DDE domain AYP_RS05945 PF01526 Tn3 transposase DDE domain AYP_RS05945 PF13700 Domain of unknown function (DUF4158) AYP_RS05950 PF00239 Resolvase, N terminal domain AYP_RS05950 PF02796 Helix-turn-helix domain of resolvase AYP_RS05955 PF13610 DDE domain AYP_RS05970 PF01636 Phosphotransferase enzyme family AYP_RS05975 PF13610 DDE domain AYP_RS05985 PF00589 Phage integrase family AYP_RS05985 PF13495 Phage integrase, N-terminal SAM-like domain AYP_RS05990 PF00583 Acetyltransferase (GNAT) family AYP_RS06010 PF13427 Domain of unknown function (DUF4111) AYP_RS06010 PF01909 Nucleotidyltransferase domain AYP_RS06015 PF00893 Small Multidrug Resistance protein AYP_RS06020 PF00809 Pterin binding enzyme AYP_RS06050 PF13610 DDE domain AYP_RS06055 PF00563 EAL domain AYP_RS06055 PF11809 Domain of unknown function (DUF3330) AYP_RS06060 PF00239 Resolvase, N terminal domain AYP_RS06060 PF02796 Helix-turn-helix domain of resolvase AYP_RS06070 PF13610 DDE domain AYP_RS06080 PF00106 short chain dehydrogenase AYP_RS06090 PF00440 Bacterial regulatory proteins, tetR family AYP_RS06090 PF17932 Tetracyclin repressor-like, C-terminal domain AYP_RS06095 PF17954 Quercetinase C-terminal cupin domain AYP_RS06095 PF02678 Pirin AYP_RS06105 PF00106 short chain dehydrogenase AYP_RS06110 PF00743 Flavin-binding monooxygenase-like AYP_RS06120 PF00860 Permease family AYP_RS06125 PF00962 Adenosine/AMP deaminase AYP_RS06130 PF01292 Prokaryotic cytochrome b561 AYP_RS06140 PF01351 Ribonuclease HII AYP_RS06145 PF02599 Global regulator protein family AYP_RS06150 PF01842 ACT domain AYP_RS06150 PF13840 ACT domain AYP_RS06150 PF00696 Amino acid kinase family AYP_RS06155 PF02272 DHHA1 domain AYP_RS06155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYP_RS06155 PF01411 tRNA synthetases class II (A) AYP_RS06160 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYP_RS06160 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYP_RS06165 PF13393 Histidyl-tRNA synthetase AYP_RS06170 PF00709 Adenylosuccinate synthetase AYP_RS06185 PF00248 Aldo/keto reductase family AYP_RS06195 PF00027 Cyclic nucleotide-binding domain AYP_RS06195 PF13545 Crp-like helix-turn-helix domain AYP_RS06200 PF02566 OsmC-like protein AYP_RS06215 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_RS06215 PF02861 Clp amino terminal domain, pathogenicity island component AYP_RS06215 PF17871 AAA lid domain AYP_RS06215 PF07724 AAA domain (Cdc48 subfamily) AYP_RS06215 PF00004 ATPase family associated with various cellular activities (AAA) AYP_RS06230 PF02926 THUMP domain AYP_RS06230 PF10672 S-adenosylmethionine-dependent methyltransferase AYP_RS06230 PF01170 Putative RNA methylase family UPF0020 AYP_RS06240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYP_RS06240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYP_RS06245 PF01979 Amidohydrolase family AYP_RS06250 PF00691 OmpA family AYP_RS06250 PF13488 Glycine zipper AYP_RS06260 PF00043 Glutathione S-transferase, C-terminal domain AYP_RS06260 PF13417 Glutathione S-transferase, N-terminal domain AYP_RS06265 PF02390 Putative methyltransferase AYP_RS06275 PF02798 Glutathione S-transferase, N-terminal domain AYP_RS06275 PF00043 Glutathione S-transferase, C-terminal domain AYP_RS06285 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS06285 PF13192 Thioredoxin domain AYP_RS06305 PF00578 AhpC/TSA family AYP_RS06305 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYP_RS06310 PF00271 Helicase conserved C-terminal domain AYP_RS06310 PF11898 Domain of unknown function (DUF3418) AYP_RS06310 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AYP_RS06310 PF00270 DEAD/DEAH box helicase AYP_RS06310 PF04408 Helicase associated domain (HA2) AYP_RS06315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYP_RS06315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYP_RS06325 PF07690 Major Facilitator Superfamily AYP_RS06330 PF03594 Benzoate membrane transport protein AYP_RS06335 PF00106 short chain dehydrogenase AYP_RS06340 PF00175 Oxidoreductase NAD-binding domain AYP_RS06340 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS06340 PF00970 Oxidoreductase FAD-binding domain AYP_RS06345 PF00866 Ring hydroxylating beta subunit AYP_RS06350 PF00355 Rieske [2Fe-2S] domain AYP_RS06350 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_RS06355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS06355 PF03466 LysR substrate binding domain AYP_RS06365 PF00403 Heavy-metal-associated domain AYP_RS06370 PF00376 MerR family regulatory protein AYP_RS06370 PF09278 MerR, DNA binding AYP_RS06410 PF02601 Exonuclease VII, large subunit AYP_RS06410 PF13742 OB-fold nucleic acid binding domain AYP_RS06445 PF01810 LysE type translocator AYP_RS06450 PF00313 'Cold-shock' DNA-binding domain AYP_RS06460 PF03807 NADP oxidoreductase coenzyme F420-dependent AYP_RS06460 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYP_RS06490 PF07690 Major Facilitator Superfamily AYP_RS06495 PF01638 HxlR-like helix-turn-helix AYP_RS06580 PF01381 Helix-turn-helix AYP_RS06730 PF00589 Phage integrase family AYP_RS06740 PF09190 DALR domain AYP_RS06740 PF01406 tRNA synthetases class I (C) catalytic domain AYP_RS06745 PF01380 SIS domain AYP_RS06745 PF00571 CBS domain AYP_RS06760 PF03968 OstA-like protein AYP_RS06765 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYP_RS06765 PF00005 ABC transporter AYP_RS06770 PF02321 Outer membrane efflux protein AYP_RS06775 PF03412 Peptidase C39 family AYP_RS06775 PF00005 ABC transporter AYP_RS06775 PF00664 ABC transporter transmembrane region AYP_RS06785 PF01205 Uncharacterized protein family UPF0029 AYP_RS06790 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS06800 PF01596 O-methyltransferase AYP_RS06810 PF11953 Domain of unknown function (DUF3470) AYP_RS06810 PF00037 4Fe-4S binding domain AYP_RS06820 PF05190 MutS family domain IV AYP_RS06820 PF05188 MutS domain II AYP_RS06820 PF01624 MutS domain I AYP_RS06820 PF00488 MutS domain V AYP_RS06820 PF05192 MutS domain III AYP_RS06825 PF01037 Lrp/AsnC ligand binding domain AYP_RS06830 PF00892 EamA-like transporter family AYP_RS06835 PF03707 Bacterial signalling protein N terminal repeat AYP_RS06835 PF00563 EAL domain AYP_RS06835 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS06840 PF03279 Bacterial lipid A biosynthesis acyltransferase AYP_RS06850 PF07690 Major Facilitator Superfamily AYP_RS06870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_RS06870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_RS06890 PF13419 Haloacid dehalogenase-like hydrolase AYP_RS06905 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AYP_RS06905 PF13296 Putative type VI secretion system Rhs element Vgr AYP_RS06905 PF04717 Type VI secretion system, phage-baseplate injector AYP_RS06910 PF03527 RHS protein AYP_RS06910 PF05593 RHS Repeat AYP_RS06925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS06925 PF03466 LysR substrate binding domain AYP_RS06930 PF01566 Natural resistance-associated macrophage protein AYP_RS06935 PF03746 LamB/YcsF family AYP_RS06940 PF07286 Protein of unknown function (DUF1445) AYP_RS06950 PF00289 Biotin carboxylase, N-terminal domain AYP_RS06950 PF00364 Biotin-requiring enzyme AYP_RS06950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_RS06950 PF02785 Biotin carboxylase C-terminal domain AYP_RS06955 PF00654 Voltage gated chloride channel AYP_RS06980 PF00440 Bacterial regulatory proteins, tetR family AYP_RS06990 PF13823 Alcohol dehydrogenase GroES-associated AYP_RS06990 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS06990 PF00107 Zinc-binding dehydrogenase AYP_RS07005 PF00289 Biotin carboxylase, N-terminal domain AYP_RS07005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_RS07005 PF02785 Biotin carboxylase C-terminal domain AYP_RS07010 PF02525 Flavodoxin-like fold AYP_RS07030 PF08753 NikR C terminal nickel binding domain AYP_RS07030 PF01402 Ribbon-helix-helix protein, copG family AYP_RS07035 PF01425 Amidase AYP_RS07040 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_RS07045 PF00005 ABC transporter AYP_RS07075 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AYP_RS07090 PF05947 Type VI secretion system, TssF AYP_RS07105 PF06744 Type VI secretion protein IcmF C-terminal AYP_RS07105 PF06761 Intracellular multiplication and human macrophage-killing AYP_RS07105 PF14331 ImcF-related N-terminal domain AYP_RS07115 PF00691 OmpA family AYP_RS07115 PF01389 OmpA-like transmembrane domain AYP_RS07125 PF00004 ATPase family associated with various cellular activities (AAA) AYP_RS07125 PF17871 AAA lid domain AYP_RS07125 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_RS07125 PF07724 AAA domain (Cdc48 subfamily) AYP_RS07130 PF06812 ImpA, N-terminal, type VI secretion system AYP_RS07135 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AYP_RS07155 PF03466 LysR substrate binding domain AYP_RS07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07165 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYP_RS07170 PF07690 Major Facilitator Superfamily AYP_RS07185 PF02677 Epoxyqueuosine reductase QueH AYP_RS07200 PF00376 MerR family regulatory protein AYP_RS07200 PF09278 MerR, DNA binding AYP_RS07215 PF00701 Dihydrodipicolinate synthetase family AYP_RS07225 PF00392 Bacterial regulatory proteins, gntR family AYP_RS07230 PF05544 Proline racemase AYP_RS07235 PF01266 FAD dependent oxidoreductase AYP_RS07245 PF04324 BFD-like [2Fe-2S] binding domain AYP_RS07245 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS07255 PF00083 Sugar (and other) transporter AYP_RS07260 PF00171 Aldehyde dehydrogenase family AYP_RS07265 PF13520 Amino acid permease AYP_RS07270 PF03313 Serine dehydratase alpha chain AYP_RS07270 PF03315 Serine dehydratase beta chain AYP_RS07275 PF00171 Aldehyde dehydrogenase family AYP_RS07275 PF01575 MaoC like domain AYP_RS07280 PF05138 Phenylacetic acid catabolic protein AYP_RS07285 PF06243 Phenylacetic acid degradation B AYP_RS07290 PF05138 Phenylacetic acid catabolic protein AYP_RS07295 PF01883 Iron-sulfur cluster assembly protein AYP_RS07300 PF00175 Oxidoreductase NAD-binding domain AYP_RS07300 PF00970 Oxidoreductase FAD-binding domain AYP_RS07300 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS07305 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS07310 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS07315 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_RS07315 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYP_RS07315 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_RS07320 PF00108 Thiolase, N-terminal domain AYP_RS07320 PF02803 Thiolase, C-terminal domain AYP_RS07325 PF00501 AMP-binding enzyme AYP_RS07325 PF14535 AMP-binding enzyme C-terminal domain AYP_RS07330 PF08223 PaaX-like protein C-terminal domain AYP_RS07330 PF07848 PaaX-like protein AYP_RS07335 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS07340 PF03061 Thioesterase superfamily AYP_RS07380 PF00199 Catalase AYP_RS07385 PF01292 Prokaryotic cytochrome b561 AYP_RS07405 PF12697 Alpha/beta hydrolase family AYP_RS07410 PF01613 Flavin reductase like domain AYP_RS07415 PF00296 Luciferase-like monooxygenase AYP_RS07420 PF00171 Aldehyde dehydrogenase family AYP_RS07430 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYP_RS07440 PF00171 Aldehyde dehydrogenase family AYP_RS07445 PF02627 Carboxymuconolactone decarboxylase family AYP_RS07450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07450 PF03466 LysR substrate binding domain AYP_RS07455 PF02525 Flavodoxin-like fold AYP_RS07460 PF01614 Bacterial transcriptional regulator AYP_RS07460 PF09339 IclR helix-turn-helix domain AYP_RS07465 PF01494 FAD binding domain AYP_RS07470 PF07702 UTRA domain AYP_RS07470 PF00392 Bacterial regulatory proteins, gntR family AYP_RS07480 PF00005 ABC transporter AYP_RS07480 PF08402 TOBE domain AYP_RS07500 PF01266 FAD dependent oxidoreductase AYP_RS07505 PF00266 Aminotransferase class-V AYP_RS07510 PF13419 Haloacid dehalogenase-like hydrolase AYP_RS07515 PF07690 Major Facilitator Superfamily AYP_RS07520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS07520 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS07520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS07525 PF02515 CoA-transferase family III AYP_RS07530 PF09339 IclR helix-turn-helix domain AYP_RS07535 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS07540 PF03060 Nitronate monooxygenase AYP_RS07545 PF07690 Major Facilitator Superfamily AYP_RS07550 PF09339 IclR helix-turn-helix domain AYP_RS07555 PF00108 Thiolase, N-terminal domain AYP_RS07555 PF02803 Thiolase, C-terminal domain AYP_RS07560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_RS07560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_RS07560 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AYP_RS07570 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS07575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS07575 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS07575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS07580 PF07690 Major Facilitator Superfamily AYP_RS07585 PF01144 Coenzyme A transferase AYP_RS07590 PF01144 Coenzyme A transferase AYP_RS07600 PF07690 Major Facilitator Superfamily AYP_RS07610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS07610 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_RS07610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS07610 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS07625 PF03466 LysR substrate binding domain AYP_RS07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07630 PF00682 HMGL-like AYP_RS07635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_RS07635 PF00289 Biotin carboxylase, N-terminal domain AYP_RS07635 PF02785 Biotin carboxylase C-terminal domain AYP_RS07635 PF18140 Propionyl-coenzyme A carboxylase BT domain AYP_RS07635 PF00364 Biotin-requiring enzyme AYP_RS07640 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS07645 PF01039 Carboxyl transferase domain AYP_RS07650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS07650 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS07650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS07655 PF00440 Bacterial regulatory proteins, tetR family AYP_RS07660 PF13193 AMP-binding enzyme C-terminal domain AYP_RS07660 PF00501 AMP-binding enzyme AYP_RS07680 PF03466 LysR substrate binding domain AYP_RS07680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07710 PF18146 Damage-inducible protein CinA KH domain AYP_RS07710 PF00994 Probable molybdopterin binding domain AYP_RS07710 PF02464 Competence-damaged protein AYP_RS07720 PF00199 Catalase AYP_RS07720 PF06628 Catalase-related immune-responsive AYP_RS07720 PF18011 C-terminal domain found in long catalases AYP_RS07745 PF00717 Peptidase S24-like AYP_RS07755 PF01037 Lrp/AsnC ligand binding domain AYP_RS07755 PF13404 AsnC-type helix-turn-helix domain AYP_RS07765 PF00072 Response regulator receiver domain AYP_RS07765 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS07765 PF09308 LuxQ, periplasmic AYP_RS07770 PF00072 Response regulator receiver domain AYP_RS07785 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS07790 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS07795 PF00005 ABC transporter AYP_RS07800 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_RS07805 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_RS07815 PF03466 LysR substrate binding domain AYP_RS07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07820 PF01810 LysE type translocator AYP_RS07830 PF00266 Aminotransferase class-V AYP_RS07840 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS07845 PF00581 Rhodanese-like domain AYP_RS07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07855 PF03466 LysR substrate binding domain AYP_RS07860 PF02798 Glutathione S-transferase, N-terminal domain AYP_RS07865 PF14834 Glutathione S-transferase, C-terminal domain AYP_RS07865 PF02798 Glutathione S-transferase, N-terminal domain AYP_RS07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07870 PF03466 LysR substrate binding domain AYP_RS07875 PF03788 LrgA family AYP_RS07880 PF04172 LrgB-like family AYP_RS07885 PF00155 Aminotransferase class I and II AYP_RS07885 PF00392 Bacterial regulatory proteins, gntR family AYP_RS07900 PF07690 Major Facilitator Superfamily AYP_RS07905 PF16957 Malonate decarboxylase, alpha subunit, transporter AYP_RS07910 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AYP_RS07915 PF06857 Malonate decarboxylase delta subunit (MdcD) AYP_RS07920 PF01039 Carboxyl transferase domain AYP_RS07930 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AYP_RS07935 PF00698 Acyl transferase domain AYP_RS07950 PF03466 LysR substrate binding domain AYP_RS07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS07955 PF00392 Bacterial regulatory proteins, gntR family AYP_RS07955 PF00155 Aminotransferase class I and II AYP_RS07965 PF02322 Cytochrome bd terminal oxidase subunit II AYP_RS07970 PF01654 Cytochrome bd terminal oxidase subunit I AYP_RS07985 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS07985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS07985 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS07990 PF00296 Luciferase-like monooxygenase AYP_RS07995 PF00083 Sugar (and other) transporter AYP_RS08005 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYP_RS08010 PF00005 ABC transporter AYP_RS08015 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS08020 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AYP_RS08025 PF01177 Asp/Glu/Hydantoin racemase AYP_RS08030 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYP_RS08040 PF03466 LysR substrate binding domain AYP_RS08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS08050 PF01979 Amidohydrolase family AYP_RS08050 PF13382 Adenine deaminase C-terminal domain AYP_RS08060 PF03960 ArsC family AYP_RS08065 PF01022 Bacterial regulatory protein, arsR family AYP_RS08070 PF01758 Sodium Bile acid symporter family AYP_RS08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS08075 PF03466 LysR substrate binding domain AYP_RS08090 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS08090 PF13192 Thioredoxin domain AYP_RS08105 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS08110 PF00588 SpoU rRNA Methylase family AYP_RS08115 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYP_RS08115 PF14579 Helix-hairpin-helix motif AYP_RS08115 PF02811 PHP domain AYP_RS08115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYP_RS08115 PF01336 OB-fold nucleic acid binding domain AYP_RS08120 PF17763 Glutaminase/Asparaginase C-terminal domain AYP_RS08120 PF00710 Asparaginase, N-terminal AYP_RS08125 PF00375 Sodium:dicarboxylate symporter family AYP_RS08130 PF00155 Aminotransferase class I and II AYP_RS08135 PF01641 SelR domain AYP_RS08140 PF00255 Glutathione peroxidase AYP_RS08145 PF12833 Helix-turn-helix domain AYP_RS08145 PF12852 Cupin AYP_RS08155 PF00155 Aminotransferase class I and II AYP_RS08160 PF01966 HD domain AYP_RS08160 PF08335 GlnD PII-uridylyltransferase AYP_RS08160 PF01909 Nucleotidyltransferase domain AYP_RS08165 PF02222 ATP-grasp domain AYP_RS08175 PF05437 Branched-chain amino acid transport protein (AzlD) AYP_RS08180 PF03591 AzlC protein AYP_RS08205 PF06071 Protein of unknown function (DUF933) AYP_RS08205 PF01926 50S ribosome-binding GTPase AYP_RS08210 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS08215 PF00005 ABC transporter AYP_RS08215 PF09383 NIL domain AYP_RS08220 PF03180 NLPA lipoprotein AYP_RS08225 PF03180 NLPA lipoprotein AYP_RS08230 PF00296 Luciferase-like monooxygenase AYP_RS08240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS08240 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS08255 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS08260 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS08265 PF00005 ABC transporter AYP_RS08275 PF01037 Lrp/AsnC ligand binding domain AYP_RS08280 PF01709 Transcriptional regulator AYP_RS08290 PF00440 Bacterial regulatory proteins, tetR family AYP_RS08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS08310 PF03466 LysR substrate binding domain AYP_RS08320 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYP_RS08330 PF00892 EamA-like transporter family AYP_RS08355 PF13953 PapC C-terminal domain AYP_RS08355 PF13954 PapC N-terminal domain AYP_RS08355 PF00577 Outer membrane usher protein AYP_RS08360 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYP_RS08360 PF02753 Pili assembly chaperone PapD, C-terminal domain AYP_RS08365 PF16970 Type-1 fimbrial protein, A AYP_RS08380 PF06968 Biotin and Thiamin Synthesis associated domain AYP_RS08380 PF04055 Radical SAM superfamily AYP_RS08385 PF08331 Domain of unknown function (DUF1730) AYP_RS08390 PF03853 YjeF-related protein N-terminus AYP_RS08390 PF01256 Carbohydrate kinase AYP_RS08395 PF02075 Crossover junction endodeoxyribonuclease RuvC AYP_RS08410 PF00905 Penicillin binding protein transpeptidase domain AYP_RS08430 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYP_RS08430 PF02772 S-adenosylmethionine synthetase, central domain AYP_RS08430 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYP_RS08435 PF02779 Transketolase, pyrimidine binding domain AYP_RS08435 PF02780 Transketolase, C-terminal domain AYP_RS08435 PF00456 Transketolase, thiamine diphosphate binding domain AYP_RS08445 PF04264 YceI-like domain AYP_RS08455 PF09992 Phosphodiester glycosidase AYP_RS08465 PF05958 tRNA (Uracil-5-)-methyltransferase AYP_RS08470 PF04229 GrpB protein AYP_RS08475 PF00171 Aldehyde dehydrogenase family AYP_RS08475 PF01619 Proline dehydrogenase AYP_RS08475 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AYP_RS08475 PF14850 DNA-binding domain of Proline dehydrogenase AYP_RS08480 PF01037 Lrp/AsnC ligand binding domain AYP_RS08485 PF00474 Sodium:solute symporter family AYP_RS08490 PF02146 Sir2 family AYP_RS08495 PF01597 Glycine cleavage H-protein AYP_RS08500 PF12833 Helix-turn-helix domain AYP_RS08500 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AYP_RS08510 PF00664 ABC transporter transmembrane region AYP_RS08510 PF00005 ABC transporter AYP_RS08515 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AYP_RS08520 PF06912 Protein of unknown function (DUF1275) AYP_RS08525 PF00375 Sodium:dicarboxylate symporter family AYP_RS08540 PF08007 Cupin superfamily protein AYP_RS08545 PF02545 Maf-like protein AYP_RS08555 PF00162 Phosphoglycerate kinase AYP_RS08565 PF01116 Fructose-bisphosphate aldolase class-II AYP_RS08570 PF09312 SurA N-terminal domain AYP_RS08570 PF00639 PPIC-type PPIASE domain AYP_RS08575 PF04453 LPS transport system D AYP_RS08575 PF03968 OstA-like protein AYP_RS08580 PF01636 Phosphotransferase enzyme family AYP_RS08585 PF00483 Nucleotidyl transferase AYP_RS08590 PF02527 rRNA small subunit methyltransferase G AYP_RS08595 PF13614 AAA domain AYP_RS08600 PF02195 ParB-like nuclease domain AYP_RS08600 PF17762 HTH domain found in ParB protein AYP_RS08605 PF01618 MotA/TolQ/ExbB proton channel family AYP_RS08615 PF00005 ABC transporter AYP_RS08615 PF00664 ABC transporter transmembrane region AYP_RS08620 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYP_RS08625 PF02348 Cytidylyltransferase AYP_RS08630 PF09115 DNA polymerase III, delta subunit, C terminal AYP_RS08640 PF01026 TatD related DNase AYP_RS08655 PF07963 Prokaryotic N-terminal methylation motif AYP_RS08655 PF02501 Type II secretion system (T2SS), protein I AYP_RS08660 PF11612 Type II secretion system (T2SS), protein J AYP_RS08660 PF07963 Prokaryotic N-terminal methylation motif AYP_RS08665 PF03934 Type II secretion system (T2SS), protein K AYP_RS08675 PF03167 Uracil DNA glycosylase superfamily AYP_RS08685 PF14437 MafB19-like deaminase AYP_RS08695 PF02224 Cytidylate kinase AYP_RS08700 PF00575 S1 RNA binding domain AYP_RS08705 PF00216 Bacterial DNA-binding protein AYP_RS08715 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYP_RS08725 PF00743 Flavin-binding monooxygenase-like AYP_RS08735 PF03969 AFG1-like ATPase AYP_RS08740 PF01274 Malate synthase AYP_RS08750 PF02472 Biopolymer transport protein ExbD/TolR AYP_RS08755 PF02472 Biopolymer transport protein ExbD/TolR AYP_RS08760 PF01618 MotA/TolQ/ExbB proton channel family AYP_RS08770 PF00593 TonB dependent receptor AYP_RS08770 PF07715 TonB-dependent Receptor Plug Domain AYP_RS08785 PF01432 Peptidase family M3 AYP_RS08790 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS08795 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS08800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYP_RS08800 PF00005 ABC transporter AYP_RS08820 PF00459 Inositol monophosphatase family AYP_RS08830 PF01649 Ribosomal protein S20 AYP_RS08835 PF13460 NAD(P)H-binding AYP_RS08840 PF03737 Aldolase/RraA AYP_RS08860 PF02559 CarD-like/TRCF domain AYP_RS08860 PF00270 DEAD/DEAH box helicase AYP_RS08860 PF00271 Helicase conserved C-terminal domain AYP_RS08860 PF03461 TRCF domain AYP_RS08860 PF17757 UvrB interaction domain AYP_RS08870 PF00211 Adenylate and Guanylate cyclase catalytic domain AYP_RS08875 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS08880 PF00012 Hsp70 protein AYP_RS08885 PF07743 HSCB C-terminal oligomerisation domain AYP_RS08885 PF00226 DnaJ domain AYP_RS08890 PF01521 Iron-sulphur cluster biosynthesis AYP_RS08895 PF01592 NifU-like N terminal domain AYP_RS08900 PF00266 Aminotransferase class-V AYP_RS08905 PF02082 Transcriptional regulator AYP_RS08920 PF00216 Bacterial DNA-binding protein AYP_RS08925 PF09312 SurA N-terminal domain AYP_RS08925 PF00639 PPIC-type PPIASE domain AYP_RS08930 PF12852 Cupin AYP_RS08930 PF12833 Helix-turn-helix domain AYP_RS08935 PF00487 Fatty acid desaturase AYP_RS08940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS08940 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS08940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS08945 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS08945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS08945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS08950 PF03109 ABC1 family AYP_RS08960 PF04073 Aminoacyl-tRNA editing domain AYP_RS08965 PF04183 IucA / IucC family AYP_RS08965 PF06276 Ferric iron reductase FhuF-like transporter AYP_RS08970 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYP_RS08975 PF07690 Major Facilitator Superfamily AYP_RS08980 PF04183 IucA / IucC family AYP_RS08980 PF06276 Ferric iron reductase FhuF-like transporter AYP_RS08985 PF04183 IucA / IucC family AYP_RS08985 PF06276 Ferric iron reductase FhuF-like transporter AYP_RS09000 PF07715 TonB-dependent Receptor Plug Domain AYP_RS09000 PF00593 TonB dependent receptor AYP_RS09040 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AYP_RS09045 PF02277 Phosphoribosyltransferase AYP_RS09060 PF02654 Cobalamin-5-phosphate synthase AYP_RS09065 PF00793 DAHP synthetase I family AYP_RS09070 PF01925 Sulfite exporter TauE/SafE AYP_RS09090 PF07715 TonB-dependent Receptor Plug Domain AYP_RS09090 PF00593 TonB dependent receptor AYP_RS09095 PF02684 Lipid-A-disaccharide synthetase AYP_RS09105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_RS09110 PF00005 ABC transporter AYP_RS09145 PF01230 HIT domain AYP_RS09175 PF08241 Methyltransferase domain AYP_RS09180 PF00561 alpha/beta hydrolase fold AYP_RS09185 PF01053 Cys/Met metabolism PLP-dependent enzyme AYP_RS09195 PF02575 YbaB/EbfC DNA-binding family AYP_RS09200 PF13662 Toprim domain AYP_RS09200 PF02132 RecR protein AYP_RS09205 PF00570 HRDC domain AYP_RS09205 PF01612 3'-5' exonuclease AYP_RS09230 PF05166 YcgL domain AYP_RS09240 PF00004 ATPase family associated with various cellular activities (AAA) AYP_RS09240 PF01434 Peptidase family M41 AYP_RS09240 PF17862 AAA+ lid domain AYP_RS09250 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS09255 PF05175 Methyltransferase small domain AYP_RS09260 PF01264 Chorismate synthase AYP_RS09265 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS09265 PF08448 PAS fold AYP_RS09290 PF04055 Radical SAM superfamily AYP_RS09295 PF00676 Dehydrogenase E1 component AYP_RS09300 PF02780 Transketolase, C-terminal domain AYP_RS09300 PF02779 Transketolase, pyrimidine binding domain AYP_RS09305 PF02817 e3 binding domain AYP_RS09305 PF00364 Biotin-requiring enzyme AYP_RS09305 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYP_RS09310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_RS09310 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS09315 PF00106 short chain dehydrogenase AYP_RS09320 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS09320 PF00107 Zinc-binding dehydrogenase AYP_RS09325 PF01062 Bestrophin, RFP-TM, chloride channel AYP_RS09330 PF02954 Bacterial regulatory protein, Fis family AYP_RS09330 PF00158 Sigma-54 interaction domain AYP_RS09330 PF00072 Response regulator receiver domain AYP_RS09335 PF04273 Putative phosphatase (DUF442) AYP_RS09335 PF00753 Metallo-beta-lactamase superfamily AYP_RS09340 PF04273 Putative phosphatase (DUF442) AYP_RS09340 PF00753 Metallo-beta-lactamase superfamily AYP_RS09345 PF01925 Sulfite exporter TauE/SafE AYP_RS09360 PF12833 Helix-turn-helix domain AYP_RS09360 PF06445 GyrI-like small molecule binding domain AYP_RS09365 PF01638 HxlR-like helix-turn-helix AYP_RS09370 PF02525 Flavodoxin-like fold AYP_RS09380 PF07702 UTRA domain AYP_RS09380 PF00392 Bacterial regulatory proteins, gntR family AYP_RS09395 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYP_RS09400 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS09405 PF00005 ABC transporter AYP_RS09420 PF00083 Sugar (and other) transporter AYP_RS09425 PF07715 TonB-dependent Receptor Plug Domain AYP_RS09425 PF00593 TonB dependent receptor AYP_RS09430 PF00206 Lyase AYP_RS09430 PF10415 Fumarase C C-terminus AYP_RS09445 PF03466 LysR substrate binding domain AYP_RS09445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS09450 PF03466 LysR substrate binding domain AYP_RS09455 PF02803 Thiolase, C-terminal domain AYP_RS09455 PF00108 Thiolase, N-terminal domain AYP_RS09460 PF02667 Short chain fatty acid transporter AYP_RS09465 PF01144 Coenzyme A transferase AYP_RS09470 PF01144 Coenzyme A transferase AYP_RS09475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS09475 PF03466 LysR substrate binding domain AYP_RS09500 PF06719 AraC-type transcriptional regulator N-terminus AYP_RS09500 PF12833 Helix-turn-helix domain AYP_RS09505 PF07690 Major Facilitator Superfamily AYP_RS09510 PF01738 Dienelactone hydrolase family AYP_RS09525 PF01613 Flavin reductase like domain AYP_RS09535 PF14525 AraC-binding-like domain AYP_RS09535 PF12833 Helix-turn-helix domain AYP_RS09540 PF00970 Oxidoreductase FAD-binding domain AYP_RS09540 PF00175 Oxidoreductase NAD-binding domain AYP_RS09540 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS09545 PF00866 Ring hydroxylating beta subunit AYP_RS09550 PF00355 Rieske [2Fe-2S] domain AYP_RS09550 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_RS09555 PF03459 TOBE domain AYP_RS09555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS09565 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS09570 PF03459 TOBE domain AYP_RS09570 PF00005 ABC transporter AYP_RS09575 PF00106 short chain dehydrogenase AYP_RS09580 PF00857 Isochorismatase family AYP_RS09580 PF00550 Phosphopantetheine attachment site AYP_RS09590 PF00149 Calcineurin-like phosphoesterase AYP_RS09595 PF13090 Polyphosphate kinase C-terminal domain 2 AYP_RS09595 PF13089 Polyphosphate kinase N-terminal domain AYP_RS09595 PF17941 Polyphosphate kinase C-terminal domain 1 AYP_RS09595 PF02503 Polyphosphate kinase middle domain AYP_RS09600 PF08042 PqqA family AYP_RS09605 PF12706 Beta-lactamase superfamily domain AYP_RS09610 PF03070 TENA/THI-4/PQQC family AYP_RS09615 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AYP_RS09620 PF13186 Iron-sulfur cluster-binding domain AYP_RS09620 PF04055 Radical SAM superfamily AYP_RS09625 PF01244 Membrane dipeptidase (Peptidase family M19) AYP_RS09645 PF13091 PLD-like domain AYP_RS09660 PF00199 Catalase AYP_RS09670 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS09670 PF00107 Zinc-binding dehydrogenase AYP_RS09680 PF00419 Fimbrial protein AYP_RS09685 PF13954 PapC N-terminal domain AYP_RS09685 PF00577 Outer membrane usher protein AYP_RS09685 PF13953 PapC C-terminal domain AYP_RS09690 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AYP_RS09690 PF02753 Pili assembly chaperone PapD, C-terminal domain AYP_RS09700 PF16970 Type-1 fimbrial protein, A AYP_RS09720 PF01266 FAD dependent oxidoreductase AYP_RS09735 PF01593 Flavin containing amine oxidoreductase AYP_RS09740 PF00743 Flavin-binding monooxygenase-like AYP_RS09745 PF12146 Serine aminopeptidase, S33 AYP_RS09750 PF02321 Outer membrane efflux protein AYP_RS09755 PF00873 AcrB/AcrD/AcrF family AYP_RS09760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_RS09760 PF00529 HlyD membrane-fusion protein of T1SS AYP_RS09765 PF00072 Response regulator receiver domain AYP_RS09765 PF00486 Transcriptional regulatory protein, C terminal AYP_RS09770 PF16527 Two-component sensor protein CpxA, periplasmic domain AYP_RS09770 PF00672 HAMP domain AYP_RS09770 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS09780 PF02311 AraC-like ligand binding domain AYP_RS09780 PF12833 Helix-turn-helix domain AYP_RS09785 PF12146 Serine aminopeptidase, S33 AYP_RS09845 PF02824 TGS domain AYP_RS09845 PF13291 ACT domain AYP_RS09845 PF04607 Region found in RelA / SpoT proteins AYP_RS09855 PF01975 Survival protein SurE AYP_RS09880 PF07690 Major Facilitator Superfamily AYP_RS09885 PF13533 Biotin-lipoyl like AYP_RS09890 PF01425 Amidase AYP_RS09895 PF00196 Bacterial regulatory proteins, luxR family AYP_RS09970 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYP_RS09975 PF14572 Phosphoribosyl synthetase-associated domain AYP_RS09975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYP_RS10000 PF00005 ABC transporter AYP_RS10005 PF01032 FecCD transport family AYP_RS10015 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS10015 PF00107 Zinc-binding dehydrogenase AYP_RS10030 PF06719 AraC-type transcriptional regulator N-terminus AYP_RS10030 PF12833 Helix-turn-helix domain AYP_RS10035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYP_RS10035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYP_RS10040 PF07690 Major Facilitator Superfamily AYP_RS10045 PF01370 NAD dependent epimerase/dehydratase family AYP_RS10050 PF03466 LysR substrate binding domain AYP_RS10050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS10060 PF00920 Dehydratase family AYP_RS10065 PF00171 Aldehyde dehydrogenase family AYP_RS10080 PF00529 HlyD membrane-fusion protein of T1SS AYP_RS10080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_RS10100 PF03737 Aldolase/RraA AYP_RS10105 PF01842 ACT domain AYP_RS10105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_RS10105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_RS10110 PF07690 Major Facilitator Superfamily AYP_RS10130 PF03466 LysR substrate binding domain AYP_RS10130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS10140 PF08450 SMP-30/Gluconolactonase/LRE-like region AYP_RS10145 PF07702 UTRA domain AYP_RS10145 PF00392 Bacterial regulatory proteins, gntR family AYP_RS10155 PF04909 Amidohydrolase AYP_RS10160 PF07690 Major Facilitator Superfamily AYP_RS10175 PF13018 Extended Signal Peptide of Type V secretion system AYP_RS10175 PF13332 Hemagglutinin repeat AYP_RS10175 PF04829 Pre-toxin domain with VENN motif AYP_RS10175 PF05860 haemagglutination activity domain AYP_RS10180 PF08479 POTRA domain, ShlB-type AYP_RS10180 PF17287 POTRA domain AYP_RS10180 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AYP_RS10195 PF01546 Peptidase family M20/M25/M40 AYP_RS10195 PF07687 Peptidase dimerisation domain AYP_RS10205 PF00999 Sodium/hydrogen exchanger family AYP_RS10205 PF02254 TrkA-N domain AYP_RS10210 PF07995 Glucose / Sorbosone dehydrogenase AYP_RS10215 PF03466 LysR substrate binding domain AYP_RS10215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS10220 PF00857 Isochorismatase family AYP_RS10230 PF00440 Bacterial regulatory proteins, tetR family AYP_RS10230 PF08359 YsiA-like protein, C-terminal region AYP_RS10235 PF12706 Beta-lactamase superfamily domain AYP_RS10245 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS10255 PF00376 MerR family regulatory protein AYP_RS10255 PF09278 MerR, DNA binding AYP_RS10260 PF01872 RibD C-terminal domain AYP_RS10265 PF00106 short chain dehydrogenase AYP_RS10270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_RS10270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS10275 PF01047 MarR family AYP_RS10280 PF07859 alpha/beta hydrolase fold AYP_RS10300 PF00199 Catalase AYP_RS10300 PF06628 Catalase-related immune-responsive AYP_RS10305 PF00561 alpha/beta hydrolase fold AYP_RS10315 PF00171 Aldehyde dehydrogenase family AYP_RS10320 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS10320 PF00107 Zinc-binding dehydrogenase AYP_RS10325 PF00474 Sodium:solute symporter family AYP_RS10330 PF04341 Protein of unknown function, DUF485 AYP_RS10335 PF13193 AMP-binding enzyme C-terminal domain AYP_RS10335 PF00501 AMP-binding enzyme AYP_RS10340 PF02954 Bacterial regulatory protein, Fis family AYP_RS10340 PF06506 Propionate catabolism activator AYP_RS10340 PF00158 Sigma-54 interaction domain AYP_RS10350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS10350 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS10350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS10370 PF00171 Aldehyde dehydrogenase family AYP_RS10380 PF07690 Major Facilitator Superfamily AYP_RS10385 PF00920 Dehydratase family AYP_RS10390 PF07729 FCD domain AYP_RS10390 PF00392 Bacterial regulatory proteins, gntR family AYP_RS10400 PF03466 LysR substrate binding domain AYP_RS10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS10405 PF13378 Enolase C-terminal domain-like AYP_RS10405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYP_RS10410 PF02426 Muconolactone delta-isomerase AYP_RS10415 PF00775 Dioxygenase AYP_RS10415 PF04444 Catechol dioxygenase N terminus AYP_RS10420 PF01144 Coenzyme A transferase AYP_RS10425 PF01144 Coenzyme A transferase AYP_RS10430 PF00108 Thiolase, N-terminal domain AYP_RS10430 PF02803 Thiolase, C-terminal domain AYP_RS10435 PF12146 Serine aminopeptidase, S33 AYP_RS10440 PF01804 Penicillin amidase AYP_RS10445 PF00171 Aldehyde dehydrogenase family AYP_RS10455 PF01179 Copper amine oxidase, enzyme domain AYP_RS10455 PF07833 Copper amine oxidase N-terminal domain AYP_RS10455 PF02727 Copper amine oxidase, N2 domain AYP_RS10455 PF02728 Copper amine oxidase, N3 domain AYP_RS10460 PF12833 Helix-turn-helix domain AYP_RS10460 PF02311 AraC-like ligand binding domain AYP_RS10465 PF01613 Flavin reductase like domain AYP_RS10470 PF00175 Oxidoreductase NAD-binding domain AYP_RS10470 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS10485 PF00355 Rieske [2Fe-2S] domain AYP_RS10485 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_RS10500 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS10505 PF01425 Amidase AYP_RS10515 PF07690 Major Facilitator Superfamily AYP_RS10525 PF00106 short chain dehydrogenase AYP_RS10540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS10540 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS10540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS10545 PF03466 LysR substrate binding domain AYP_RS10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS10550 PF09339 IclR helix-turn-helix domain AYP_RS10550 PF01614 Bacterial transcriptional regulator AYP_RS10555 PF00753 Metallo-beta-lactamase superfamily AYP_RS10565 PF04143 Sulphur transport AYP_RS10575 PF13360 PQQ-like domain AYP_RS10575 PF01011 PQQ enzyme repeat AYP_RS10580 PF04966 Carbohydrate-selective porin, OprB family AYP_RS10585 PF05048 Periplasmic copper-binding protein (NosD) AYP_RS10590 PF01487 Type I 3-dehydroquinase AYP_RS10595 PF00775 Dioxygenase AYP_RS10600 PF00775 Dioxygenase AYP_RS10600 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AYP_RS10605 PF02627 Carboxymuconolactone decarboxylase family AYP_RS10610 PF07690 Major Facilitator Superfamily AYP_RS10615 PF00561 alpha/beta hydrolase fold AYP_RS10620 PF10397 Adenylosuccinate lyase C-terminus AYP_RS10620 PF00206 Lyase AYP_RS10625 PF00108 Thiolase, N-terminal domain AYP_RS10625 PF02803 Thiolase, C-terminal domain AYP_RS10630 PF01144 Coenzyme A transferase AYP_RS10635 PF01144 Coenzyme A transferase AYP_RS10640 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AYP_RS10645 PF04977 Septum formation initiator AYP_RS10650 PF04239 Protein of unknown function (DUF421) AYP_RS10655 PF00113 Enolase, C-terminal TIM barrel domain AYP_RS10655 PF03952 Enolase, N-terminal domain AYP_RS10660 PF00793 DAHP synthetase I family AYP_RS10665 PF06418 CTP synthase N-terminus AYP_RS10665 PF00117 Glutamine amidotransferase class-I AYP_RS10695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_RS10695 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS10710 PF00793 DAHP synthetase I family AYP_RS10715 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AYP_RS10720 PF07724 AAA domain (Cdc48 subfamily) AYP_RS10720 PF17871 AAA lid domain AYP_RS10720 PF00004 ATPase family associated with various cellular activities (AAA) AYP_RS10720 PF02861 Clp amino terminal domain, pathogenicity island component AYP_RS10720 PF10431 C-terminal, D2-small domain, of ClpB protein AYP_RS10725 PF02617 ATP-dependent Clp protease adaptor protein ClpS AYP_RS10735 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYP_RS10735 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYP_RS10750 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYP_RS10755 PF00585 C-terminal regulatory domain of Threonine dehydratase AYP_RS10755 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS10760 PF02080 TrkA-C domain AYP_RS10760 PF02254 TrkA-N domain AYP_RS10765 PF02386 Cation transport protein AYP_RS10770 PF02253 Phospholipase A1 AYP_RS10775 PF05193 Peptidase M16 inactive domain AYP_RS10775 PF00675 Insulinase (Peptidase family M16) AYP_RS10775 PF08367 Peptidase M16C associated AYP_RS10780 PF00593 TonB dependent receptor AYP_RS10780 PF07715 TonB-dependent Receptor Plug Domain AYP_RS10785 PF00294 pfkB family carbohydrate kinase AYP_RS10795 PF07290 Protein of unknown function (DUF1449) AYP_RS10810 PF01654 Cytochrome bd terminal oxidase subunit I AYP_RS10815 PF02322 Cytochrome bd terminal oxidase subunit II AYP_RS10820 PF08173 Membrane bound YbgT-like protein AYP_RS10835 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AYP_RS10845 PF02881 SRP54-type protein, helical bundle domain AYP_RS10845 PF00448 SRP54-type protein, GTPase domain AYP_RS10870 PF00478 IMP dehydrogenase / GMP reductase domain AYP_RS10870 PF00571 CBS domain AYP_RS10875 PF00202 Aminotransferase class-III AYP_RS10880 PF00462 Glutaredoxin AYP_RS10890 PF03466 LysR substrate binding domain AYP_RS10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS10895 PF00557 Metallopeptidase family M24 AYP_RS10900 PF05525 Branched-chain amino acid transport protein AYP_RS10925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AYP_RS10925 PF05524 PEP-utilising enzyme, N-terminal AYP_RS10925 PF00391 PEP-utilising enzyme, mobile domain AYP_RS10925 PF02896 PEP-utilising enzyme, TIM barrel domain AYP_RS10925 PF00381 PTS HPr component phosphorylation site AYP_RS10930 PF00294 pfkB family carbohydrate kinase AYP_RS10935 PF02378 Phosphotransferase system, EIIC AYP_RS10935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AYP_RS10955 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS10955 PF03707 Bacterial signalling protein N terminal repeat AYP_RS10955 PF00563 EAL domain AYP_RS10965 PF07995 Glucose / Sorbosone dehydrogenase AYP_RS10970 PF02586 SOS response associated peptidase (SRAP) AYP_RS10975 PF00916 Sulfate permease family AYP_RS10975 PF01740 STAS domain AYP_RS10980 PF05922 Peptidase inhibitor I9 AYP_RS10980 PF00082 Subtilase family AYP_RS10995 PF00324 Amino acid permease AYP_RS11000 PF00266 Aminotransferase class-V AYP_RS11005 PF01037 Lrp/AsnC ligand binding domain AYP_RS11030 PF13419 Haloacid dehalogenase-like hydrolase AYP_RS11035 PF01479 S4 domain AYP_RS11040 PF00154 recA bacterial DNA recombination protein AYP_RS11045 PF02631 RecX family AYP_RS11060 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYP_RS11060 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS11065 PF07977 FabA-like domain AYP_RS11070 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYP_RS11070 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS11080 PF07244 Surface antigen variable number repeat AYP_RS11080 PF01103 Surface antigen AYP_RS11085 PF13180 PDZ domain AYP_RS11085 PF17820 PDZ domain AYP_RS11085 PF02163 Peptidase family M50 AYP_RS11090 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AYP_RS11090 PF13288 DXP reductoisomerase C-terminal domain AYP_RS11090 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AYP_RS11100 PF01255 Putative undecaprenyl diphosphate synthase AYP_RS11105 PF01765 Ribosome recycling factor AYP_RS11110 PF00696 Amino acid kinase family AYP_RS11115 PF04055 Radical SAM superfamily AYP_RS11115 PF00919 Uncharacterized protein family UPF0004 AYP_RS11115 PF18693 TRAM domain AYP_RS11120 PF00989 PAS fold AYP_RS11120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS11120 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS11125 PF00072 Response regulator receiver domain AYP_RS11125 PF00158 Sigma-54 interaction domain AYP_RS11125 PF02954 Bacterial regulatory protein, Fis family AYP_RS11135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYP_RS11135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYP_RS11145 PF02542 YgbB family AYP_RS11155 PF01266 FAD dependent oxidoreductase AYP_RS11180 PF00206 Lyase AYP_RS11180 PF10415 Fumarase C C-terminus AYP_RS11185 PF16363 GDP-mannose 4,6 dehydratase AYP_RS11190 PF02635 DsrE/DsrF-like family AYP_RS11210 PF00892 EamA-like transporter family AYP_RS11215 PF00155 Aminotransferase class I and II AYP_RS11215 PF00392 Bacterial regulatory proteins, gntR family AYP_RS11220 PF01638 HxlR-like helix-turn-helix AYP_RS11225 PF00994 Probable molybdopterin binding domain AYP_RS11225 PF03454 MoeA C-terminal region (domain IV) AYP_RS11225 PF03453 MoeA N-terminal region (domain I and II) AYP_RS11230 PF01967 MoaC family AYP_RS11230 PF00994 Probable molybdopterin binding domain AYP_RS11235 PF02391 MoaE protein AYP_RS11245 PF06463 Molybdenum Cofactor Synthesis C AYP_RS11245 PF04055 Radical SAM superfamily AYP_RS11250 PF00384 Molybdopterin oxidoreductase AYP_RS11250 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYP_RS11250 PF01568 Molydopterin dinucleotide binding domain AYP_RS11255 PF12804 MobA-like NTP transferase domain AYP_RS11260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYP_RS11260 PF01568 Molydopterin dinucleotide binding domain AYP_RS11260 PF04324 BFD-like [2Fe-2S] binding domain AYP_RS11260 PF00384 Molybdopterin oxidoreductase AYP_RS11265 PF04324 BFD-like [2Fe-2S] binding domain AYP_RS11265 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYP_RS11265 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYP_RS11265 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS11265 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYP_RS11270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS11270 PF13806 Rieske-like [2Fe-2S] domain AYP_RS11270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYP_RS11270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYP_RS11270 PF04324 BFD-like [2Fe-2S] binding domain AYP_RS11270 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYP_RS11280 PF00072 Response regulator receiver domain AYP_RS11280 PF00486 Transcriptional regulatory protein, C terminal AYP_RS11285 PF00005 ABC transporter AYP_RS11295 PF13438 Domain of unknown function (DUF4113) AYP_RS11295 PF00817 impB/mucB/samB family AYP_RS11295 PF11799 impB/mucB/samB family C-terminal domain AYP_RS11300 PF01220 Dehydroquinase class II AYP_RS11305 PF00364 Biotin-requiring enzyme AYP_RS11310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_RS11310 PF00289 Biotin carboxylase, N-terminal domain AYP_RS11310 PF02785 Biotin carboxylase C-terminal domain AYP_RS11320 PF12832 MFS_1 like family AYP_RS11660 PF01645 Conserved region in glutamate synthase AYP_RS11675 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYP_RS11675 PF01565 FAD binding domain AYP_RS11680 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYP_RS11690 PF00465 Iron-containing alcohol dehydrogenase AYP_RS11695 PF03061 Thioesterase superfamily AYP_RS11700 PF05506 Domain of unknown function (DUF756) AYP_RS11700 PF04185 Phosphoesterase family AYP_RS11705 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AYP_RS11705 PF12170 DNA polymerase III tau subunit V interacting with alpha AYP_RS11705 PF12169 DNA polymerase III subunits gamma and tau domain III AYP_RS11710 PF07690 Major Facilitator Superfamily AYP_RS11720 PF00144 Beta-lactamase AYP_RS11725 PF01575 MaoC like domain AYP_RS11735 PF02803 Thiolase, C-terminal domain AYP_RS11735 PF00108 Thiolase, N-terminal domain AYP_RS11745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS11745 PF03466 LysR substrate binding domain AYP_RS11750 PF00923 Transaldolase/Fructose-6-phosphate aldolase AYP_RS11755 PF01810 LysE type translocator AYP_RS11760 PF01037 Lrp/AsnC ligand binding domain AYP_RS11765 PF03594 Benzoate membrane transport protein AYP_RS11770 PF02308 MgtC family AYP_RS11775 PF00690 Cation transporter/ATPase, N-terminus AYP_RS11775 PF00689 Cation transporting ATPase, C-terminus AYP_RS11795 PF00582 Universal stress protein family AYP_RS11800 PF00005 ABC transporter AYP_RS11800 PF12848 ABC transporter AYP_RS11820 PF07715 TonB-dependent Receptor Plug Domain AYP_RS11820 PF00593 TonB dependent receptor AYP_RS11850 PF00924 Mechanosensitive ion channel AYP_RS11855 PF00593 TonB dependent receptor AYP_RS11855 PF07715 TonB-dependent Receptor Plug Domain AYP_RS11860 PF00440 Bacterial regulatory proteins, tetR family AYP_RS11875 PF01037 Lrp/AsnC ligand binding domain AYP_RS11880 PF01817 Chorismate mutase type II AYP_RS11890 PF00106 short chain dehydrogenase AYP_RS11900 PF11940 Domain of unknown function (DUF3458) Ig-like fold AYP_RS11900 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AYP_RS11900 PF01433 Peptidase family M1 domain AYP_RS11915 PF02110 Hydroxyethylthiazole kinase family AYP_RS11920 PF06445 GyrI-like small molecule binding domain AYP_RS11930 PF05970 PIF1-like helicase AYP_RS11930 PF14493 Helix-turn-helix domain AYP_RS11935 PF00465 Iron-containing alcohol dehydrogenase AYP_RS11950 PF00171 Aldehyde dehydrogenase family AYP_RS11955 PF13520 Amino acid permease AYP_RS11960 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYP_RS11965 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYP_RS11970 PF00117 Glutamine amidotransferase class-I AYP_RS11970 PF00958 GMP synthase C terminal domain AYP_RS11970 PF02540 NAD synthase AYP_RS11975 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYP_RS11975 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AYP_RS11980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYP_RS11985 PF00149 Calcineurin-like phosphoesterase AYP_RS11995 PF00881 Nitroreductase family AYP_RS12005 PF17209 Hfq protein AYP_RS12015 PF01119 DNA mismatch repair protein, C-terminal domain AYP_RS12015 PF08676 MutL C terminal dimerisation domain AYP_RS12020 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AYP_RS12025 PF01479 S4 domain AYP_RS12025 PF00849 RNA pseudouridylate synthase AYP_RS12040 PF01479 S4 domain AYP_RS12040 PF00849 RNA pseudouridylate synthase AYP_RS12050 PF04284 Protein of unknown function (DUF441) AYP_RS12055 PF03466 LysR substrate binding domain AYP_RS12055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS12070 PF07690 Major Facilitator Superfamily AYP_RS12075 PF00027 Cyclic nucleotide-binding domain AYP_RS12075 PF00520 Ion transport protein AYP_RS12085 PF11791 Aconitate B N-terminal domain AYP_RS12085 PF06434 Aconitate hydratase 2 N-terminus AYP_RS12085 PF00330 Aconitase family (aconitate hydratase) AYP_RS12105 PF01103 Surface antigen AYP_RS12105 PF17243 POTRA domain TamA domain 1 AYP_RS12105 PF07244 Surface antigen variable number repeat AYP_RS12110 PF07690 Major Facilitator Superfamily AYP_RS12115 PF03232 Ubiquinone biosynthesis protein COQ7 AYP_RS12125 PF00120 Glutamine synthetase, catalytic domain AYP_RS12130 PF00072 Response regulator receiver domain AYP_RS12130 PF00486 Transcriptional regulatory protein, C terminal AYP_RS12135 PF13493 Domain of unknown function (DUF4118) AYP_RS12135 PF02702 Osmosensitive K+ channel His kinase sensor domain AYP_RS12135 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS12135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS12140 PF02669 K+-transporting ATPase, c chain AYP_RS12150 PF03814 Potassium-transporting ATPase A subunit AYP_RS12165 PF03109 ABC1 family AYP_RS12170 PF00899 ThiF family AYP_RS12175 PF01613 Flavin reductase like domain AYP_RS12180 PF00501 AMP-binding enzyme AYP_RS12180 PF13193 AMP-binding enzyme C-terminal domain AYP_RS12185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS12185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS12185 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS12190 PF00106 short chain dehydrogenase AYP_RS12195 PF12833 Helix-turn-helix domain AYP_RS12200 PF09084 NMT1/THI5 like AYP_RS12205 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS12210 PF17827 PrmC N-terminal domain AYP_RS12210 PF13847 Methyltransferase domain AYP_RS12215 PF00472 RF-1 domain AYP_RS12215 PF03462 PCRF domain AYP_RS12225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS12225 PF03466 LysR substrate binding domain AYP_RS12245 PF00296 Luciferase-like monooxygenase AYP_RS12255 PF13994 PgaD-like protein AYP_RS12260 PF00535 Glycosyl transferase family 2 AYP_RS12265 PF14883 Hypothetical glycosyl hydrolase family 13 AYP_RS12265 PF01522 Polysaccharide deacetylase AYP_RS12275 PF03618 Kinase/pyrophosphorylase AYP_RS12280 PF00391 PEP-utilising enzyme, mobile domain AYP_RS12280 PF02896 PEP-utilising enzyme, TIM barrel domain AYP_RS12280 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYP_RS12290 PF06481 COX Aromatic Rich Motif AYP_RS12290 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYP_RS12295 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYP_RS12300 PF00510 Cytochrome c oxidase subunit III AYP_RS12305 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AYP_RS12310 PF01040 UbiA prenyltransferase family AYP_RS12315 PF01250 Ribosomal protein S6 AYP_RS12320 PF01084 Ribosomal protein S18 AYP_RS12325 PF01281 Ribosomal protein L9, N-terminal domain AYP_RS12325 PF03948 Ribosomal protein L9, C-terminal domain AYP_RS12330 PF00772 DnaB-like helicase N terminal domain AYP_RS12330 PF03796 DnaB-like helicase C terminal domain AYP_RS12335 PF00842 Alanine racemase, C-terminal domain AYP_RS12335 PF01168 Alanine racemase, N-terminal domain AYP_RS12345 PF01841 Transglutaminase-like superfamily AYP_RS12345 PF08379 Bacterial transglutaminase-like N-terminal region AYP_RS12355 PF14403 Circularly permuted ATP-grasp type 2 AYP_RS12365 PF01134 Glucose inhibited division protein A AYP_RS12365 PF13932 GidA associated domain AYP_RS12385 PF02954 Bacterial regulatory protein, Fis family AYP_RS12390 PF01808 AICARFT/IMPCHase bienzyme AYP_RS12390 PF02142 MGS-like domain AYP_RS12395 PF02843 Phosphoribosylglycinamide synthetase, C domain AYP_RS12395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AYP_RS12395 PF02844 Phosphoribosylglycinamide synthetase, N domain AYP_RS12400 PF03180 NLPA lipoprotein AYP_RS12405 PF09383 NIL domain AYP_RS12405 PF00005 ABC transporter AYP_RS12410 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS12415 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYP_RS12415 PF00753 Metallo-beta-lactamase superfamily AYP_RS12425 PF00375 Sodium:dicarboxylate symporter family AYP_RS12445 PF07995 Glucose / Sorbosone dehydrogenase AYP_RS12450 PF00892 EamA-like transporter family AYP_RS12455 PF01177 Asp/Glu/Hydantoin racemase AYP_RS12465 PF02470 MlaD protein AYP_RS12470 PF04403 Paraquat-inducible protein A AYP_RS12480 PF06826 Predicted Permease Membrane Region AYP_RS12480 PF02080 TrkA-C domain AYP_RS12485 PF00155 Aminotransferase class I and II AYP_RS12510 PF00083 Sugar (and other) transporter AYP_RS12510 PF08946 Osmosensory transporter coiled coil AYP_RS12560 PF00392 Bacterial regulatory proteins, gntR family AYP_RS12560 PF07729 FCD domain AYP_RS12570 PF03616 Sodium/glutamate symporter AYP_RS12575 PF00561 alpha/beta hydrolase fold AYP_RS12605 PF04076 Bacterial OB fold (BOF) protein AYP_RS12635 PF00324 Amino acid permease AYP_RS12640 PF00171 Aldehyde dehydrogenase family AYP_RS12645 PF00202 Aminotransferase class-III AYP_RS12650 PF03466 LysR substrate binding domain AYP_RS12650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS12665 PF00069 Protein kinase domain AYP_RS12685 PF00814 Glycoprotease family AYP_RS12690 PF01165 Ribosomal protein S21 AYP_RS12695 PF09424 Yqey-like protein AYP_RS12700 PF01435 Peptidase family M48 AYP_RS12705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_RS12705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_RS12720 PF00156 Phosphoribosyl transferase domain AYP_RS12725 PF02674 Colicin V production protein AYP_RS12730 PF01180 Dihydroorotate dehydrogenase AYP_RS12750 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYP_RS12750 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYP_RS12755 PF00881 Nitroreductase family AYP_RS12765 PF00270 DEAD/DEAH box helicase AYP_RS12765 PF00271 Helicase conserved C-terminal domain AYP_RS12770 PF00313 'Cold-shock' DNA-binding domain AYP_RS12780 PF04545 Sigma-70, region 4 AYP_RS12780 PF00140 Sigma-70 factor, region 1.2 AYP_RS12780 PF04542 Sigma-70 region 2 AYP_RS12785 PF04241 Protein of unknown function (DUF423) AYP_RS12795 PF05690 Thiazole biosynthesis protein ThiG AYP_RS12805 PF03883 Peroxide stress protein YaaA AYP_RS12815 PF12706 Beta-lactamase superfamily domain AYP_RS12820 PF07687 Peptidase dimerisation domain AYP_RS12820 PF01546 Peptidase family M20/M25/M40 AYP_RS12830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYP_RS12835 PF00800 Prephenate dehydratase AYP_RS12835 PF01842 ACT domain AYP_RS12835 PF01817 Chorismate mutase type II AYP_RS12840 PF00756 Putative esterase AYP_RS12845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS12845 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS12845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS12850 PF00375 Sodium:dicarboxylate symporter family AYP_RS12860 PF02885 Glycosyl transferase family, helical bundle domain AYP_RS12860 PF00591 Glycosyl transferase family, a/b domain AYP_RS12865 PF07023 Protein of unknown function (DUF1315) AYP_RS12870 PF01513 ATP-NAD kinase AYP_RS12875 PF00912 Transglycosylase AYP_RS12875 PF00905 Penicillin binding protein transpeptidase domain AYP_RS12875 PF14814 Bifunctional transglycosylase second domain AYP_RS12885 PF00293 NUDIX domain AYP_RS12895 PF08521 Two-component sensor kinase N-terminal AYP_RS12895 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS12895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS12900 PF00486 Transcriptional regulatory protein, C terminal AYP_RS12900 PF00072 Response regulator receiver domain AYP_RS12910 PF00437 Type II/IV secretion system protein AYP_RS12910 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AYP_RS12920 PF01980 tRNA-methyltransferase O AYP_RS12920 PF18389 TrmO C-terminal domain AYP_RS12925 PF00175 Oxidoreductase NAD-binding domain AYP_RS12925 PF00970 Oxidoreductase FAD-binding domain AYP_RS12930 PF02567 Phenazine biosynthesis-like protein AYP_RS12935 PF00155 Aminotransferase class I and II AYP_RS12935 PF00392 Bacterial regulatory proteins, gntR family AYP_RS12940 PF01136 Peptidase family U32 AYP_RS12940 PF16325 Peptidase family U32 C-terminal domain AYP_RS12945 PF00037 4Fe-4S binding domain AYP_RS12950 PF00893 Small Multidrug Resistance protein AYP_RS12955 PF00005 ABC transporter AYP_RS12960 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS12965 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS12970 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_RS12975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS12975 PF03466 LysR substrate binding domain AYP_RS12980 PF13533 Biotin-lipoyl like AYP_RS12985 PF00873 AcrB/AcrD/AcrF family AYP_RS12990 PF02321 Outer membrane efflux protein AYP_RS12995 PF00464 Serine hydroxymethyltransferase AYP_RS13025 PF00005 ABC transporter AYP_RS13030 PF01061 ABC-2 type transporter AYP_RS13035 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AYP_RS13035 PF14489 QueF-like protein AYP_RS13045 PF01098 Cell cycle protein AYP_RS13050 PF13406 Transglycosylase SLT domain AYP_RS13055 PF05036 Sporulation related domain AYP_RS13055 PF03330 Lytic transglycolase AYP_RS13075 PF12833 Helix-turn-helix domain AYP_RS13085 PF00889 Elongation factor TS AYP_RS13090 PF00318 Ribosomal protein S2 AYP_RS13095 PF00557 Metallopeptidase family M24 AYP_RS13105 PF07690 Major Facilitator Superfamily AYP_RS13115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS13115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_RS13120 PF04055 Radical SAM superfamily AYP_RS13125 PF09317 Domain of unknown function (DUF1974) AYP_RS13125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS13125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS13140 PF05221 S-adenosyl-L-homocysteine hydrolase AYP_RS13140 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYP_RS13145 PF02219 Methylenetetrahydrofolate reductase AYP_RS13150 PF04452 RNA methyltransferase AYP_RS13155 PF00563 EAL domain AYP_RS13155 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS13155 PF03707 Bacterial signalling protein N terminal repeat AYP_RS13160 PF01515 Phosphate acetyl/butaryl transferase AYP_RS13160 PF03949 Malic enzyme, NAD binding domain AYP_RS13160 PF00390 Malic enzyme, N-terminal domain AYP_RS13165 PF12627 Probable RNA and SrmB- binding site of polymerase A AYP_RS13165 PF01743 Poly A polymerase head domain AYP_RS13170 PF13180 PDZ domain AYP_RS13175 PF01784 NIF3 (NGG1p interacting factor 3) AYP_RS13180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYP_RS13180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYP_RS13215 PF01040 UbiA prenyltransferase family AYP_RS13220 PF04345 Chorismate lyase AYP_RS13225 PF00120 Glutamine synthetase, catalytic domain AYP_RS13225 PF03951 Glutamine synthetase, beta-Grasp domain AYP_RS13230 PF00854 POT family AYP_RS13240 PF00117 Glutamine amidotransferase class-I AYP_RS13255 PF01433 Peptidase family M1 domain AYP_RS13255 PF11838 ERAP1-like C-terminal domain AYP_RS13260 PF00593 TonB dependent receptor AYP_RS13260 PF07715 TonB-dependent Receptor Plug Domain AYP_RS13265 PF00591 Glycosyl transferase family, a/b domain AYP_RS13265 PF02885 Glycosyl transferase family, helical bundle domain AYP_RS13270 PF00218 Indole-3-glycerol phosphate synthase AYP_RS13300 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYP_RS13300 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYP_RS13305 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS13305 PF01799 [2Fe-2S] binding domain AYP_RS13310 PF01227 GTP cyclohydrolase I AYP_RS13320 PF00144 Beta-lactamase AYP_RS13335 PF05675 Protein of unknown function (DUF817) AYP_RS13340 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYP_RS13350 PF00425 chorismate binding enzyme AYP_RS13360 PF00975 Thioesterase domain AYP_RS13365 PF00005 ABC transporter AYP_RS13370 PF00005 ABC transporter AYP_RS13380 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYP_RS13385 PF00550 Phosphopantetheine attachment site AYP_RS13385 PF00857 Isochorismatase family AYP_RS13390 PF13193 AMP-binding enzyme C-terminal domain AYP_RS13390 PF00501 AMP-binding enzyme AYP_RS13395 PF00550 Phosphopantetheine attachment site AYP_RS13395 PF00668 Condensation domain AYP_RS13395 PF00501 AMP-binding enzyme AYP_RS13400 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AYP_RS13405 PF00593 TonB dependent receptor AYP_RS13405 PF07715 TonB-dependent Receptor Plug Domain AYP_RS13410 PF01497 Periplasmic binding protein AYP_RS13415 PF00005 ABC transporter AYP_RS13420 PF01032 FecCD transport family AYP_RS13425 PF01032 FecCD transport family AYP_RS13430 PF13193 AMP-binding enzyme C-terminal domain AYP_RS13430 PF00668 Condensation domain AYP_RS13430 PF00550 Phosphopantetheine attachment site AYP_RS13430 PF00975 Thioesterase domain AYP_RS13430 PF00501 AMP-binding enzyme AYP_RS13435 PF13193 AMP-binding enzyme C-terminal domain AYP_RS13435 PF00668 Condensation domain AYP_RS13435 PF00550 Phosphopantetheine attachment site AYP_RS13435 PF00501 AMP-binding enzyme AYP_RS13445 PF13309 HTH domain AYP_RS13445 PF08348 YheO-like PAS domain AYP_RS13455 PF17954 Quercetinase C-terminal cupin domain AYP_RS13455 PF02678 Pirin AYP_RS13475 PF00440 Bacterial regulatory proteins, tetR family AYP_RS13480 PF14765 Polyketide synthase dehydratase AYP_RS13480 PF08659 KR domain AYP_RS13480 PF16197 Ketoacyl-synthetase C-terminal extension AYP_RS13480 PF00550 Phosphopantetheine attachment site AYP_RS13480 PF00698 Acyl transferase domain AYP_RS13480 PF09277 Erythronolide synthase, docking AYP_RS13480 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_RS13480 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_RS13480 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS13480 PF08990 Erythronolide synthase docking AYP_RS13485 PF13378 Enolase C-terminal domain-like AYP_RS13485 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYP_RS13490 PF00083 Sugar (and other) transporter AYP_RS13495 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AYP_RS13505 PF00892 EamA-like transporter family AYP_RS13525 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYP_RS13525 PF01266 FAD dependent oxidoreductase AYP_RS13530 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS13530 PF18113 Rubredoxin binding C-terminal domain AYP_RS13535 PF00171 Aldehyde dehydrogenase family AYP_RS13540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYP_RS13540 PF00355 Rieske [2Fe-2S] domain AYP_RS13545 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_RS13550 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_RS13555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS13555 PF03466 LysR substrate binding domain AYP_RS13560 PF00324 Amino acid permease AYP_RS13565 PF00171 Aldehyde dehydrogenase family AYP_RS13580 PF06018 CodY GAF-like domain AYP_RS13580 PF13556 PucR C-terminal helix-turn-helix domain AYP_RS13580 PF17853 GGDEF-like domain AYP_RS13615 PF04328 Selenoprotein, putative AYP_RS13620 PF02554 Carbon starvation protein CstA AYP_RS13620 PF13722 5TM C-terminal transporter carbon starvation CstA AYP_RS13625 PF01132 Elongation factor P (EF-P) OB domain AYP_RS13625 PF08207 Elongation factor P (EF-P) KOW-like domain AYP_RS13625 PF09285 Elongation factor P, C-terminal AYP_RS13630 PF04055 Radical SAM superfamily AYP_RS13645 PF01197 Ribosomal protein L31 AYP_RS13650 PF13593 SBF-like CPA transporter family (DUF4137) AYP_RS13655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_RS13660 PF07690 Major Facilitator Superfamily AYP_RS13665 PF05362 Lon protease (S16) C-terminal proteolytic domain AYP_RS13665 PF13654 AAA domain AYP_RS13670 PF03466 LysR substrate binding domain AYP_RS13670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS13675 PF01476 LysM domain AYP_RS13675 PF01551 Peptidase family M23 AYP_RS13680 PF01975 Survival protein SurE AYP_RS13695 PF07943 Penicillin-binding protein 5, C-terminal domain AYP_RS13695 PF00768 D-alanyl-D-alanine carboxypeptidase AYP_RS13700 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS13705 PF00293 NUDIX domain AYP_RS13705 PF13344 Haloacid dehalogenase-like hydrolase AYP_RS13715 PF04356 Protein of unknown function (DUF489) AYP_RS13720 PF08328 Adenylosuccinate lyase C-terminal AYP_RS13720 PF00206 Lyase AYP_RS13735 PF01343 Peptidase family S49 AYP_RS13735 PF08496 Peptidase family S49 N-terminal AYP_RS13740 PF00005 ABC transporter AYP_RS13745 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS13750 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS13755 PF12849 PBP superfamily domain AYP_RS13760 PF00324 Amino acid permease AYP_RS13765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYP_RS13765 PF00205 Thiamine pyrophosphate enzyme, central domain AYP_RS13765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYP_RS13770 PF01037 Lrp/AsnC ligand binding domain AYP_RS13775 PF00171 Aldehyde dehydrogenase family AYP_RS13780 PF00282 Pyridoxal-dependent decarboxylase conserved domain AYP_RS13785 PF00202 Aminotransferase class-III AYP_RS13795 PF00440 Bacterial regulatory proteins, tetR family AYP_RS13795 PF17754 MftR C-terminal domain AYP_RS13805 PF00487 Fatty acid desaturase AYP_RS13810 PF00111 2Fe-2S iron-sulfur cluster binding domain AYP_RS13810 PF00970 Oxidoreductase FAD-binding domain AYP_RS13810 PF00175 Oxidoreductase NAD-binding domain AYP_RS13815 PF00440 Bacterial regulatory proteins, tetR family AYP_RS13825 PF00271 Helicase conserved C-terminal domain AYP_RS13825 PF18337 RapA N-terminal Tudor like domain AYP_RS13825 PF00176 SNF2 family N-terminal domain AYP_RS13825 PF12137 RNA polymerase recycling family C-terminal AYP_RS13825 PF18339 RapA N-terminal Tudor like domain 1 AYP_RS13830 PF00849 RNA pseudouridylate synthase AYP_RS13840 PF00202 Aminotransferase class-III AYP_RS13845 PF02581 Thiamine monophosphate synthase AYP_RS13870 PF05193 Peptidase M16 inactive domain AYP_RS13870 PF00675 Insulinase (Peptidase family M16) AYP_RS13875 PF02567 Phenazine biosynthesis-like protein AYP_RS13880 PF00375 Sodium:dicarboxylate symporter family AYP_RS13885 PF03466 LysR substrate binding domain AYP_RS13885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS13890 PF06779 Uncharacterised MFS-type transporter YbfB AYP_RS13910 PF00180 Isocitrate/isopropylmalate dehydrogenase AYP_RS13915 PF00849 RNA pseudouridylate synthase AYP_RS13920 PF03971 Monomeric isocitrate dehydrogenase AYP_RS13930 PF00768 D-alanyl-D-alanine carboxypeptidase AYP_RS13930 PF07943 Penicillin-binding protein 5, C-terminal domain AYP_RS13935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS13940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYP_RS13945 PF03441 FAD binding domain of DNA photolyase AYP_RS13945 PF00875 DNA photolyase AYP_RS13975 PF02350 UDP-N-acetylglucosamine 2-epimerase AYP_RS13990 PF03060 Nitronate monooxygenase AYP_RS13995 PF01207 Dihydrouridine synthase (Dus) AYP_RS14000 PF00589 Phage integrase family AYP_RS14330 PF07759 Protein of unknown function (DUF1615) AYP_RS14340 PF01472 PUA domain AYP_RS14340 PF00696 Amino acid kinase family AYP_RS14345 PF01926 50S ribosome-binding GTPase AYP_RS14345 PF01018 GTP1/OBG AYP_RS14360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYP_RS14360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYP_RS14365 PF00892 EamA-like transporter family AYP_RS14375 PF00271 Helicase conserved C-terminal domain AYP_RS14375 PF04851 Type III restriction enzyme, res subunit AYP_RS14375 PF02151 UvrB/uvrC motif AYP_RS14375 PF17757 UvrB interaction domain AYP_RS14375 PF12344 Ultra-violet resistance protein B AYP_RS14385 PF17151 Periplasmic sensor domain AYP_RS14385 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS14395 PF00155 Aminotransferase class I and II AYP_RS14425 PF00106 short chain dehydrogenase AYP_RS14430 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AYP_RS14435 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AYP_RS14440 PF11967 Recombination protein O N terminal AYP_RS14440 PF02565 Recombination protein O C terminal AYP_RS14450 PF01926 50S ribosome-binding GTPase AYP_RS14450 PF07650 KH domain AYP_RS14455 PF00035 Double-stranded RNA binding motif AYP_RS14455 PF14622 Ribonuclease-III-like AYP_RS14465 PF10502 Signal peptidase, peptidase S26 AYP_RS14470 PF00679 Elongation factor G C-terminus AYP_RS14470 PF00009 Elongation factor Tu GTP binding domain AYP_RS14470 PF03144 Elongation factor Tu domain 2 AYP_RS14470 PF06421 GTP-binding protein LepA C-terminus AYP_RS14480 PF13180 PDZ domain AYP_RS14485 PF00890 FAD binding domain AYP_RS14485 PF02910 Fumarate reductase flavoprotein C-term AYP_RS14495 PF02223 Thymidylate kinase AYP_RS14500 PF02618 YceG-like family AYP_RS14505 PF01063 Amino-transferase class IV AYP_RS14520 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS14525 PF00528 Binding-protein-dependent transport system inner membrane component AYP_RS14530 PF00005 ABC transporter AYP_RS14530 PF12857 TOBE-like domain AYP_RS14535 PF03466 LysR substrate binding domain AYP_RS14535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS14545 PF14602 Hexapeptide repeat of succinyl-transferase AYP_RS14545 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS14545 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AYP_RS14555 PF06508 Queuosine biosynthesis protein QueC AYP_RS14570 PF00578 AhpC/TSA family AYP_RS14580 PF01467 Cytidylyltransferase-like AYP_RS14580 PF00293 NUDIX domain AYP_RS14585 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS14590 PF01784 NIF3 (NGG1p interacting factor 3) AYP_RS14595 PF07690 Major Facilitator Superfamily AYP_RS14600 PF02769 AIR synthase related protein, C-terminal domain AYP_RS14600 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AYP_RS14600 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AYP_RS14605 PF01966 HD domain AYP_RS14610 PF07499 RuvA, C-terminal domain AYP_RS14610 PF01330 RuvA N terminal domain AYP_RS14615 PF17864 RuvB AAA lid domain AYP_RS14615 PF05491 RuvB C-terminal winged helix domain AYP_RS14615 PF05496 Holliday junction DNA helicase RuvB P-loop domain AYP_RS14620 PF07687 Peptidase dimerisation domain AYP_RS14620 PF01546 Peptidase family M20/M25/M40 AYP_RS14625 PF03061 Thioesterase superfamily AYP_RS14630 PF01618 MotA/TolQ/ExbB proton channel family AYP_RS14635 PF02472 Biopolymer transport protein ExbD/TolR AYP_RS14645 PF04052 TolB amino-terminal domain AYP_RS14645 PF07676 WD40-like Beta Propeller Repeat AYP_RS14650 PF00691 OmpA family AYP_RS14660 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AYP_RS14665 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYP_RS14665 PF00588 SpoU rRNA Methylase family AYP_RS14695 PF08299 Bacterial dnaA protein helix-turn-helix AYP_RS14695 PF11638 DnaA N-terminal domain AYP_RS14695 PF00308 Bacterial dnaA protein AYP_RS14700 PF01594 AI-2E family transporter AYP_RS14705 PF02769 AIR synthase related protein, C-terminal domain AYP_RS14705 PF00586 AIR synthase related protein, N-terminal domain AYP_RS14710 PF00551 Formyl transferase AYP_RS14715 PF12697 Alpha/beta hydrolase family AYP_RS14720 PF06965 Na+/H+ antiporter 1 AYP_RS14720 PF01343 Peptidase family S49 AYP_RS14730 PF03772 Competence protein AYP_RS14730 PF13567 Domain of unknown function (DUF4131) AYP_RS14730 PF00753 Metallo-beta-lactamase superfamily AYP_RS14735 PF00005 ABC transporter AYP_RS14740 PF12704 MacB-like periplasmic core domain AYP_RS14740 PF02687 FtsX-like permease family AYP_RS14750 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AYP_RS14760 PF00266 Aminotransferase class-V AYP_RS14770 PF13533 Biotin-lipoyl like AYP_RS14790 PF00535 Glycosyl transferase family 2 AYP_RS14805 PF00521 DNA gyrase/topoisomerase IV, subunit A AYP_RS14805 PF03989 DNA gyrase C-terminal domain, beta-propeller AYP_RS14810 PF00766 Electron transfer flavoprotein FAD-binding domain AYP_RS14810 PF01012 Electron transfer flavoprotein domain AYP_RS14815 PF01012 Electron transfer flavoprotein domain AYP_RS14820 PF00589 Phage integrase family AYP_RS14820 PF02899 Phage integrase, N-terminal SAM-like domain AYP_RS14825 PF01810 LysE type translocator AYP_RS14830 PF01678 Diaminopimelate epimerase AYP_RS14835 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYP_RS14835 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYP_RS14845 PF00324 Amino acid permease AYP_RS14850 PF18073 Rubredoxin metal binding domain AYP_RS14860 PF00152 tRNA synthetases class II (D, K and N) AYP_RS14865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_RS14865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_RS14865 PF11890 Domain of unknown function (DUF3410) AYP_RS14870 PF06803 Protein of unknown function (DUF1232) AYP_RS14875 PF02634 FdhD/NarQ family AYP_RS14880 PF00384 Molybdopterin oxidoreductase AYP_RS14885 PF02595 Glycerate kinase family AYP_RS14900 PF00881 Nitroreductase family AYP_RS14925 PF00501 AMP-binding enzyme AYP_RS14925 PF00668 Condensation domain AYP_RS14925 PF00975 Thioesterase domain AYP_RS14925 PF13193 AMP-binding enzyme C-terminal domain AYP_RS14925 PF00550 Phosphopantetheine attachment site AYP_RS14940 PF03449 Transcription elongation factor, N-terminal AYP_RS14940 PF01272 Transcription elongation factor, GreA/GreB, C-term AYP_RS14945 PF01464 Transglycosylase SLT domain AYP_RS14945 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYP_RS14955 PF01171 PP-loop family AYP_RS14965 PF01464 Transglycosylase SLT domain AYP_RS14970 PF01435 Peptidase family M48 AYP_RS14980 PF00873 AcrB/AcrD/AcrF family AYP_RS14985 PF03009 Glycerophosphoryl diester phosphodiesterase family AYP_RS14990 PF00753 Metallo-beta-lactamase superfamily AYP_RS14995 PF01219 Prokaryotic diacylglycerol kinase AYP_RS15000 PF00118 TCP-1/cpn60 chaperonin family AYP_RS15005 PF00166 Chaperonin 10 Kd subunit AYP_RS15015 PF00149 Calcineurin-like phosphoesterase AYP_RS15020 PF00781 Diacylglycerol kinase catalytic domain AYP_RS15025 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AYP_RS15025 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AYP_RS15030 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AYP_RS15030 PF01266 FAD dependent oxidoreductase AYP_RS15035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYP_RS15035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYP_RS15040 PF00083 Sugar (and other) transporter AYP_RS15055 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYP_RS15055 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYP_RS15070 PF16655 PhoD-like phosphatase, N-terminal domain AYP_RS15070 PF09423 PhoD-like phosphatase AYP_RS15090 PF00809 Pterin binding enzyme AYP_RS15095 PF06480 FtsH Extracellular AYP_RS15095 PF01434 Peptidase family M41 AYP_RS15095 PF00004 ATPase family associated with various cellular activities (AAA) AYP_RS15095 PF17862 AAA+ lid domain AYP_RS15100 PF01728 FtsJ-like methyltransferase AYP_RS15105 PF01985 CRS1 / YhbY (CRM) domain AYP_RS15120 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYP_RS15120 PF00117 Glutamine amidotransferase class-I AYP_RS15125 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYP_RS15125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_RS15125 PF02142 MGS-like domain AYP_RS15130 PF01272 Transcription elongation factor, GreA/GreB, C-term AYP_RS15130 PF03449 Transcription elongation factor, N-terminal AYP_RS15135 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS15140 PF00582 Universal stress protein family AYP_RS15145 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYP_RS15155 PF09587 Bacterial capsule synthesis protein PGA_cap AYP_RS15190 PF00999 Sodium/hydrogen exchanger family AYP_RS15195 PF04228 Putative neutral zinc metallopeptidase AYP_RS15200 PF05661 Protein of unknown function (DUF808) AYP_RS15205 PF00579 tRNA synthetases class I (W and Y) AYP_RS15210 PF00549 CoA-ligase AYP_RS15210 PF02629 CoA binding domain AYP_RS15215 PF08442 ATP-grasp domain AYP_RS15215 PF00549 CoA-ligase AYP_RS15220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_RS15220 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS15225 PF00364 Biotin-requiring enzyme AYP_RS15225 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYP_RS15225 PF02817 e3 binding domain AYP_RS15230 PF02779 Transketolase, pyrimidine binding domain AYP_RS15230 PF16078 2-oxoglutarate dehydrogenase N-terminus AYP_RS15230 PF00676 Dehydrogenase E1 component AYP_RS15230 PF16870 2-oxoglutarate dehydrogenase C-terminal AYP_RS15245 PF13085 2Fe-2S iron-sulfur cluster binding domain AYP_RS15250 PF00890 FAD binding domain AYP_RS15250 PF02910 Fumarate reductase flavoprotein C-term AYP_RS15255 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYP_RS15260 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYP_RS15265 PF00285 Citrate synthase, C-terminal domain AYP_RS15275 PF00581 Rhodanese-like domain AYP_RS15275 PF17773 UPF0176 acylphosphatase like domain AYP_RS15300 PF04545 Sigma-70, region 4 AYP_RS15300 PF04539 Sigma-70 region 3 AYP_RS15300 PF04542 Sigma-70 region 2 AYP_RS15300 PF00140 Sigma-70 factor, region 1.2 AYP_RS15300 PF04546 Sigma-70, non-essential region AYP_RS15300 PF03979 Sigma-70 factor, region 1.1 AYP_RS15305 PF04359 Protein of unknown function (DUF493) AYP_RS15310 PF03099 Biotin/lipoate A/B protein ligase family AYP_RS15320 PF00465 Iron-containing alcohol dehydrogenase AYP_RS15325 PF13520 Amino acid permease AYP_RS15330 PF03358 NADPH-dependent FMN reductase AYP_RS15335 PF01638 HxlR-like helix-turn-helix AYP_RS15340 PF00588 SpoU rRNA Methylase family AYP_RS15345 PF14824 Sirohaem biosynthesis protein central AYP_RS15345 PF10414 Sirohaem synthase dimerisation region AYP_RS15345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYP_RS15350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYP_RS15350 PF02403 Seryl-tRNA synthetase N-terminal domain AYP_RS15360 PF03548 Outer membrane lipoprotein carrier protein LolA AYP_RS15365 PF01016 Ribosomal L27 protein AYP_RS15370 PF00829 Ribosomal prokaryotic L21 protein AYP_RS15380 PF00348 Polyprenyl synthetase AYP_RS15390 PF01569 PAP2 superfamily AYP_RS15395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_RS15395 PF00529 HlyD membrane-fusion protein of T1SS AYP_RS15400 PF00873 AcrB/AcrD/AcrF family AYP_RS15405 PF02321 Outer membrane efflux protein AYP_RS15410 PF01906 Putative heavy-metal-binding AYP_RS15415 PF01906 Putative heavy-metal-binding AYP_RS15435 PF08264 Anticodon-binding domain of tRNA AYP_RS15435 PF00133 tRNA synthetases class I (I, L, M and V) AYP_RS15435 PF10458 Valyl tRNA synthetase tRNA binding arm AYP_RS15455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS15455 PF03466 LysR substrate binding domain AYP_RS15465 PF00909 Ammonium Transporter Family AYP_RS15475 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS15475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS15475 PF08521 Two-component sensor kinase N-terminal AYP_RS15480 PF00072 Response regulator receiver domain AYP_RS15480 PF00486 Transcriptional regulatory protein, C terminal AYP_RS15485 PF00884 Sulfatase AYP_RS15485 PF08019 Phosphoethanolamine transferase EptA/EptB AYP_RS15505 PF01734 Patatin-like phospholipase AYP_RS15515 PF01145 SPFH domain / Band 7 family AYP_RS15520 PF04237 YjbR AYP_RS15525 PF00348 Polyprenyl synthetase AYP_RS15530 PF04303 PrpF protein AYP_RS15535 PF00324 Amino acid permease AYP_RS15545 PF01965 DJ-1/PfpI family AYP_RS15550 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS15550 PF09277 Erythronolide synthase, docking AYP_RS15550 PF00698 Acyl transferase domain AYP_RS15550 PF16197 Ketoacyl-synthetase C-terminal extension AYP_RS15550 PF02801 Beta-ketoacyl synthase, C-terminal domain AYP_RS15550 PF00550 Phosphopantetheine attachment site AYP_RS15550 PF00109 Beta-ketoacyl synthase, N-terminal domain AYP_RS15550 PF14765 Polyketide synthase dehydratase AYP_RS15550 PF08659 KR domain AYP_RS15550 PF08990 Erythronolide synthase docking AYP_RS15555 PF06719 AraC-type transcriptional regulator N-terminus AYP_RS15555 PF12833 Helix-turn-helix domain AYP_RS15560 PF02673 Bacitracin resistance protein BacA AYP_RS15590 PF02525 Flavodoxin-like fold AYP_RS15605 PF01507 Phosphoadenosine phosphosulfate reductase family AYP_RS15610 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AYP_RS15610 PF06974 Protein of unknown function (DUF1298) AYP_RS15620 PF10150 Ribonuclease E/G family AYP_RS15620 PF00575 S1 RNA binding domain AYP_RS15625 PF02545 Maf-like protein AYP_RS15630 PF04093 rod shape-determining protein MreD AYP_RS15635 PF04085 rod shape-determining protein MreC AYP_RS15645 PF02686 Glu-tRNAGln amidotransferase C subunit AYP_RS15650 PF01425 Amidase AYP_RS15655 PF02637 GatB domain AYP_RS15655 PF02934 GatB/GatE catalytic domain AYP_RS15685 PF05992 SbmA/BacA-like family AYP_RS15690 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS15690 PF13291 ACT domain AYP_RS15695 PF01734 Patatin-like phospholipase AYP_RS15700 PF01235 Sodium:alanine symporter family AYP_RS15715 PF00881 Nitroreductase family AYP_RS15720 PF07690 Major Facilitator Superfamily AYP_RS15725 PF12805 FUSC-like inner membrane protein yccS AYP_RS15735 PF00175 Oxidoreductase NAD-binding domain AYP_RS15735 PF00258 Flavodoxin AYP_RS15735 PF00667 FAD binding domain AYP_RS15775 PF17969 L,D-transpeptidase C-terminal domain AYP_RS15775 PF03734 L,D-transpeptidase catalytic domain AYP_RS15780 PF04304 Protein of unknown function (DUF454) AYP_RS15790 PF08085 Entericidin EcnA/B family AYP_RS15795 PF01546 Peptidase family M20/M25/M40 AYP_RS15795 PF07687 Peptidase dimerisation domain AYP_RS15805 PF01627 Hpt domain AYP_RS15805 PF01584 CheW-like domain AYP_RS15805 PF00072 Response regulator receiver domain AYP_RS15805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS15810 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AYP_RS15810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYP_RS15815 PF01584 CheW-like domain AYP_RS15820 PF00072 Response regulator receiver domain AYP_RS15825 PF00072 Response regulator receiver domain AYP_RS15850 PF00873 AcrB/AcrD/AcrF family AYP_RS15855 PF04073 Aminoacyl-tRNA editing domain AYP_RS15855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYP_RS15855 PF03129 Anticodon binding domain AYP_RS15860 PF07411 Domain of unknown function (DUF1508) AYP_RS15865 PF08274 PhnA Zinc-Ribbon AYP_RS15865 PF03831 PhnA domain AYP_RS15870 PF04343 Protein of unknown function, DUF488 AYP_RS15880 PF01571 Aminomethyltransferase folate-binding domain AYP_RS15885 PF10411 Disulfide bond isomerase protein N-terminus AYP_RS15885 PF13098 Thioredoxin-like domain AYP_RS15900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_RS15905 PF00593 TonB dependent receptor AYP_RS15905 PF07715 TonB-dependent Receptor Plug Domain AYP_RS15910 PF02245 Methylpurine-DNA glycosylase (MPG) AYP_RS15915 PF06827 Zinc finger found in FPG and IleRS AYP_RS15915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYP_RS15915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYP_RS15930 PF01741 Large-conductance mechanosensitive channel, MscL AYP_RS15935 PF00679 Elongation factor G C-terminus AYP_RS15935 PF03144 Elongation factor Tu domain 2 AYP_RS15935 PF00009 Elongation factor Tu GTP binding domain AYP_RS15940 PF00860 Permease family AYP_RS15945 PF05175 Methyltransferase small domain AYP_RS15945 PF08468 Methyltransferase small domain N-terminal AYP_RS15950 PF00324 Amino acid permease AYP_RS15955 PF01139 tRNA-splicing ligase RtcB AYP_RS15965 PF13505 Outer membrane protein beta-barrel domain AYP_RS15965 PF00691 OmpA family AYP_RS15975 PF02803 Thiolase, C-terminal domain AYP_RS15975 PF00108 Thiolase, N-terminal domain AYP_RS15985 PF00893 Small Multidrug Resistance protein AYP_RS16000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYP_RS16000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYP_RS16005 PF01011 PQQ enzyme repeat AYP_RS16010 PF04966 Carbohydrate-selective porin, OprB family AYP_RS16015 PF02515 CoA-transferase family III AYP_RS16020 PF12833 Helix-turn-helix domain AYP_RS16020 PF02311 AraC-like ligand binding domain AYP_RS16025 PF02803 Thiolase, C-terminal domain AYP_RS16025 PF00108 Thiolase, N-terminal domain AYP_RS16030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYP_RS16030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYP_RS16030 PF00378 Enoyl-CoA hydratase/isomerase AYP_RS16055 PF03006 Haemolysin-III related AYP_RS16060 PF07690 Major Facilitator Superfamily AYP_RS16060 PF00083 Sugar (and other) transporter AYP_RS16070 PF01043 SecA preprotein cross-linking domain AYP_RS16070 PF07516 SecA Wing and Scaffold domain AYP_RS16070 PF02810 SEC-C motif AYP_RS16070 PF07517 SecA DEAD-like domain AYP_RS16075 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYP_RS16075 PF00578 AhpC/TSA family AYP_RS16080 PF00753 Metallo-beta-lactamase superfamily AYP_RS16095 PF02875 Mur ligase family, glutamate ligase domain AYP_RS16095 PF08245 Mur ligase middle domain AYP_RS16100 PF01039 Carboxyl transferase domain AYP_RS16105 PF00290 Tryptophan synthase alpha chain AYP_RS16130 PF00291 Pyridoxal-phosphate dependent enzyme AYP_RS16135 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYP_RS16140 PF00593 TonB dependent receptor AYP_RS16140 PF07715 TonB-dependent Receptor Plug Domain AYP_RS16145 PF01923 Cobalamin adenosyltransferase AYP_RS16165 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AYP_RS16170 PF00486 Transcriptional regulatory protein, C terminal AYP_RS16170 PF00072 Response regulator receiver domain AYP_RS16175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS16175 PF00672 HAMP domain AYP_RS16175 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS16185 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS16185 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_RS16185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS16185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS16190 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS16190 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_RS16190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS16190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS16195 PF03466 LysR substrate binding domain AYP_RS16195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS16200 PF02798 Glutathione S-transferase, N-terminal domain AYP_RS16200 PF00043 Glutathione S-transferase, C-terminal domain AYP_RS16205 PF06146 Phosphate-starvation-inducible E AYP_RS16225 PF00593 TonB dependent receptor AYP_RS16225 PF07715 TonB-dependent Receptor Plug Domain AYP_RS16235 PF01336 OB-fold nucleic acid binding domain AYP_RS16235 PF00152 tRNA synthetases class II (D, K and N) AYP_RS16235 PF02938 GAD domain AYP_RS16240 PF17101 Stealth protein CR1, conserved region 1 AYP_RS16240 PF11380 Stealth protein CR2, conserved region 2 AYP_RS16240 PF17102 Stealth protein CR3, conserved region 3 AYP_RS16265 PF13439 Glycosyltransferase Family 4 AYP_RS16265 PF00534 Glycosyl transferases group 1 AYP_RS16270 PF00535 Glycosyl transferase family 2 AYP_RS16275 PF01522 Polysaccharide deacetylase AYP_RS16290 PF01063 Amino-transferase class IV AYP_RS16295 PF08335 GlnD PII-uridylyltransferase AYP_RS16295 PF03710 Glutamate-ammonia ligase adenylyltransferase AYP_RS16300 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS16300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS16300 PF07689 KaiB domain AYP_RS16330 PF02547 Queuosine biosynthesis protein AYP_RS16345 PF01702 Queuine tRNA-ribosyltransferase AYP_RS16350 PF02699 Preprotein translocase subunit AYP_RS16355 PF13721 SecD export protein N-terminal TM region AYP_RS16355 PF02355 Protein export membrane protein AYP_RS16355 PF07549 SecD/SecF GG Motif AYP_RS16360 PF02355 Protein export membrane protein AYP_RS16360 PF07549 SecD/SecF GG Motif AYP_RS16365 PF02441 Flavoprotein AYP_RS16365 PF04127 DNA / pantothenate metabolism flavoprotein AYP_RS16370 PF04002 RadC-like JAB domain AYP_RS16375 PF01062 Bestrophin, RFP-TM, chloride channel AYP_RS16380 PF02811 PHP domain AYP_RS16385 PF04279 Intracellular septation protein A AYP_RS16390 PF03795 YCII-related domain AYP_RS16400 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYP_RS16400 PF01266 FAD dependent oxidoreductase AYP_RS16410 PF04461 Protein of unknown function (DUF520) AYP_RS16420 PF03061 Thioesterase superfamily AYP_RS16425 PF00085 Thioredoxin AYP_RS16430 PF00561 alpha/beta hydrolase fold AYP_RS16435 PF04273 Putative phosphatase (DUF442) AYP_RS16435 PF00753 Metallo-beta-lactamase superfamily AYP_RS16445 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS16445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYP_RS16480 PF17152 Periplasmic sensor domain AYP_RS16480 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS16485 PF00691 OmpA family AYP_RS16485 PF01389 OmpA-like transmembrane domain AYP_RS16490 PF10518 TAT (twin-arginine translocation) pathway signal sequence AYP_RS16490 PF00149 Calcineurin-like phosphoesterase AYP_RS16495 PF13091 PLD-like domain AYP_RS16505 PF16360 GTP-binding GTPase Middle Region AYP_RS16505 PF13167 GTP-binding GTPase N-terminal AYP_RS16505 PF01926 50S ribosome-binding GTPase AYP_RS16615 PF01551 Peptidase family M23 AYP_RS16615 PF10145 Phage-related minor tail protein AYP_RS16615 PF01464 Transglycosylase SLT domain AYP_RS16630 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system AYP_RS16900 PF00149 Calcineurin-like phosphoesterase AYP_RS16905 PF00398 Ribosomal RNA adenine dimethylase AYP_RS16910 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYP_RS16915 PF00572 Ribosomal protein L13 AYP_RS16920 PF00380 Ribosomal protein S9/S16 AYP_RS16925 PF13417 Glutathione S-transferase, N-terminal domain AYP_RS16925 PF00043 Glutathione S-transferase, C-terminal domain AYP_RS16930 PF04386 Stringent starvation protein B AYP_RS16940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYP_RS16940 PF00364 Biotin-requiring enzyme AYP_RS16940 PF02785 Biotin carboxylase C-terminal domain AYP_RS16940 PF00289 Biotin carboxylase, N-terminal domain AYP_RS16950 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS16950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS16950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS16955 PF01039 Carboxyl transferase domain AYP_RS16970 PF17932 Tetracyclin repressor-like, C-terminal domain AYP_RS16970 PF00440 Bacterial regulatory proteins, tetR family AYP_RS16975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS16975 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS16975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS17020 PF01066 CDP-alcohol phosphatidyltransferase AYP_RS17025 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AYP_RS17050 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYP_RS17050 PF00056 lactate/malate dehydrogenase, NAD binding domain AYP_RS17060 PF01464 Transglycosylase SLT domain AYP_RS17060 PF01551 Peptidase family M23 AYP_RS17060 PF10145 Phage-related minor tail protein AYP_RS17065 PF00919 Uncharacterized protein family UPF0004 AYP_RS17065 PF01938 TRAM domain AYP_RS17065 PF04055 Radical SAM superfamily AYP_RS17070 PF02562 PhoH-like protein AYP_RS17075 PF02130 Uncharacterized protein family UPF0054 AYP_RS17100 PF03358 NADPH-dependent FMN reductase AYP_RS17105 PF03631 Virulence factor BrkB AYP_RS17110 PF00892 EamA-like transporter family AYP_RS17115 PF12833 Helix-turn-helix domain AYP_RS17120 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYP_RS17165 PF17876 Cold shock domain AYP_RS17165 PF00575 S1 RNA binding domain AYP_RS17165 PF00773 RNB domain AYP_RS17165 PF08461 Ribonuclease R winged-helix domain AYP_RS17165 PF08206 Ribonuclease B OB domain AYP_RS17170 PF01432 Peptidase family M3 AYP_RS17175 PF09526 Probable metal-binding protein (DUF2387) AYP_RS17205 PF03937 Flavinator of succinate dehydrogenase AYP_RS17210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS17210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS17210 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS17215 PF00743 Flavin-binding monooxygenase-like AYP_RS17220 PF01196 Ribosomal protein L17 AYP_RS17225 PF01000 RNA polymerase Rpb3/RpoA insert domain AYP_RS17225 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYP_RS17225 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYP_RS17230 PF00163 Ribosomal protein S4/S9 N-terminal domain AYP_RS17230 PF01479 S4 domain AYP_RS17235 PF00411 Ribosomal protein S11 AYP_RS17240 PF00416 Ribosomal protein S13/S18 AYP_RS17245 PF00444 Ribosomal protein L36 AYP_RS17250 PF00344 SecY translocase AYP_RS17255 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AYP_RS17260 PF00327 Ribosomal protein L30p/L7e AYP_RS17265 PF00333 Ribosomal protein S5, N-terminal domain AYP_RS17265 PF03719 Ribosomal protein S5, C-terminal domain AYP_RS17270 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AYP_RS17275 PF00347 Ribosomal protein L6 AYP_RS17280 PF00410 Ribosomal protein S8 AYP_RS17285 PF00253 Ribosomal protein S14p/S29e AYP_RS17290 PF00673 ribosomal L5P family C-terminus AYP_RS17290 PF00281 Ribosomal protein L5 AYP_RS17295 PF00467 KOW motif AYP_RS17295 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AYP_RS17300 PF00238 Ribosomal protein L14p/L23e AYP_RS17305 PF00366 Ribosomal protein S17 AYP_RS17310 PF00831 Ribosomal L29 protein AYP_RS17315 PF00252 Ribosomal protein L16p/L10e AYP_RS17320 PF07650 KH domain AYP_RS17320 PF00189 Ribosomal protein S3, C-terminal domain AYP_RS17325 PF00237 Ribosomal protein L22p/L17e AYP_RS17330 PF00203 Ribosomal protein S19 AYP_RS17335 PF00181 Ribosomal Proteins L2, RNA binding domain AYP_RS17335 PF03947 Ribosomal Proteins L2, C-terminal domain AYP_RS17340 PF00276 Ribosomal protein L23 AYP_RS17345 PF00573 Ribosomal protein L4/L1 family AYP_RS17350 PF00297 Ribosomal protein L3 AYP_RS17355 PF00338 Ribosomal protein S10p/S20e AYP_RS17360 PF00117 Glutamine amidotransferase class-I AYP_RS17365 PF01053 Cys/Met metabolism PLP-dependent enzyme AYP_RS17370 PF05872 Bacterial protein of unknown function (DUF853) AYP_RS17375 PF00970 Oxidoreductase FAD-binding domain AYP_RS17375 PF00042 Globin AYP_RS17375 PF00175 Oxidoreductase NAD-binding domain AYP_RS17380 PF02082 Transcriptional regulator AYP_RS17385 PF01926 50S ribosome-binding GTPase AYP_RS17395 PF00375 Sodium:dicarboxylate symporter family AYP_RS17405 PF01553 Acyltransferase AYP_RS17420 PF17191 RecG wedge domain AYP_RS17420 PF00271 Helicase conserved C-terminal domain AYP_RS17420 PF00270 DEAD/DEAH box helicase AYP_RS17425 PF00156 Phosphoribosyl transferase domain AYP_RS17430 PF00293 NUDIX domain AYP_RS17435 PF03641 Possible lysine decarboxylase AYP_RS17440 PF01544 CorA-like Mg2+ transporter protein AYP_RS17450 PF05494 MlaC protein AYP_RS17460 PF02405 Permease MlaE AYP_RS17465 PF00005 ABC transporter AYP_RS17470 PF00271 Helicase conserved C-terminal domain AYP_RS17470 PF00270 DEAD/DEAH box helicase AYP_RS17470 PF12343 Cold shock protein DEAD box A AYP_RS17470 PF03880 DbpA RNA binding domain AYP_RS17475 PF00459 Inositol monophosphatase family AYP_RS17480 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AYP_RS17480 PF02779 Transketolase, pyrimidine binding domain AYP_RS17480 PF02780 Transketolase, C-terminal domain AYP_RS17485 PF00925 GTP cyclohydrolase II AYP_RS17490 PF01218 Coproporphyrinogen III oxidase AYP_RS17495 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYP_RS17495 PF01488 Shikimate / quinate 5-dehydrogenase AYP_RS17495 PF08501 Shikimate dehydrogenase substrate binding domain AYP_RS17505 PF02770 Acyl-CoA dehydrogenase, middle domain AYP_RS17505 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYP_RS17505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYP_RS17505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYP_RS17515 PF04024 PspC domain AYP_RS17520 PF00571 CBS domain AYP_RS17545 PF02091 Glycyl-tRNA synthetase alpha subunit AYP_RS17550 PF05746 DALR anticodon binding domain AYP_RS17550 PF02092 Glycyl-tRNA synthetase beta subunit AYP_RS17560 PF00892 EamA-like transporter family AYP_RS17565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS17565 PF03466 LysR substrate binding domain AYP_RS17580 PF00082 Subtilase family AYP_RS17580 PF05922 Peptidase inhibitor I9 AYP_RS17595 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AYP_RS17600 PF04996 Succinylarginine dihydrolase AYP_RS17605 PF00171 Aldehyde dehydrogenase family AYP_RS17610 PF04958 Arginine N-succinyltransferase beta subunit AYP_RS17615 PF00202 Aminotransferase class-III AYP_RS17620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYP_RS17620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYP_RS17625 PF00324 Amino acid permease AYP_RS17655 PF13614 AAA domain AYP_RS17660 PF01594 AI-2E family transporter AYP_RS17665 PF00080 Copper/zinc superoxide dismutase (SODC) AYP_RS17670 PF12805 FUSC-like inner membrane protein yccS AYP_RS17675 PF07690 Major Facilitator Superfamily AYP_RS17685 PF02525 Flavodoxin-like fold AYP_RS17690 PF03992 Antibiotic biosynthesis monooxygenase AYP_RS17700 PF02913 FAD linked oxidases, C-terminal domain AYP_RS17700 PF01565 FAD binding domain AYP_RS17705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYP_RS17705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYP_RS17710 PF00892 EamA-like transporter family AYP_RS17715 PF00892 EamA-like transporter family AYP_RS17725 PF01925 Sulfite exporter TauE/SafE AYP_RS17730 PF09157 Pseudouridine synthase II TruB, C-terminal AYP_RS17730 PF16198 tRNA pseudouridylate synthase B C-terminal domain AYP_RS17730 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYP_RS17735 PF03280 Proteobacterial lipase chaperone protein AYP_RS17740 PF00561 alpha/beta hydrolase fold AYP_RS17745 PF01245 Ribosomal protein L19 AYP_RS17750 PF01746 tRNA (Guanine-1)-methyltransferase AYP_RS17755 PF05239 PRC-barrel domain AYP_RS17755 PF01782 RimM N-terminal domain AYP_RS17760 PF00886 Ribosomal protein S16 AYP_RS17800 PF02401 LytB protein AYP_RS17805 PF00625 Guanylate kinase AYP_RS17810 PF01192 RNA polymerase Rpb6 AYP_RS17815 PF02824 TGS domain AYP_RS17815 PF04607 Region found in RelA / SpoT proteins AYP_RS17815 PF13291 ACT domain AYP_RS17820 PF01042 Endoribonuclease L-PSP AYP_RS17825 PF04324 BFD-like [2Fe-2S] binding domain AYP_RS17830 PF00210 Ferritin-like domain AYP_RS17835 PF15864 Protein glycosylation ligase AYP_RS17835 PF11846 Virulence factor membrane-bound polymerase, C-terminal AYP_RS17835 PF04932 O-Antigen ligase AYP_RS17845 PF07963 Prokaryotic N-terminal methylation motif AYP_RS17845 PF00114 Pilin (bacterial filament) AYP_RS17855 PF04536 TPM domain AYP_RS17860 PF04011 LemA family AYP_RS17870 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AYP_RS17870 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYP_RS17875 PF01493 GXGXG motif AYP_RS17875 PF00310 Glutamine amidotransferases class-II AYP_RS17875 PF01645 Conserved region in glutamate synthase AYP_RS17875 PF04898 Glutamate synthase central domain AYP_RS17885 PF01761 3-dehydroquinate synthase AYP_RS17890 PF01202 Shikimate kinase AYP_RS17895 PF00263 Bacterial type II and III secretion system protein AYP_RS17895 PF11741 AMIN domain AYP_RS17895 PF03958 Bacterial type II/III secretion system short domain AYP_RS17895 PF07660 Secretin and TonB N terminus short domain AYP_RS17905 PF04350 Pilus assembly protein, PilO AYP_RS17910 PF05137 Fimbrial assembly protein (PilN) AYP_RS17915 PF11104 Type IV pilus assembly protein PilM; AYP_RS17920 PF00905 Penicillin binding protein transpeptidase domain AYP_RS17920 PF00912 Transglycosylase AYP_RS17920 PF17092 Penicillin-binding protein OB-like domain AYP_RS17925 PF13847 Methyltransferase domain AYP_RS17935 PF00953 Glycosyl transferase family 4 AYP_RS17940 PF08245 Mur ligase middle domain AYP_RS17940 PF01225 Mur ligase family, catalytic domain AYP_RS17940 PF02875 Mur ligase family, glutamate ligase domain AYP_RS17945 PF02875 Mur ligase family, glutamate ligase domain AYP_RS17945 PF01225 Mur ligase family, catalytic domain AYP_RS17945 PF08245 Mur ligase middle domain AYP_RS17950 PF03717 Penicillin-binding Protein dimerisation domain AYP_RS17950 PF00905 Penicillin binding protein transpeptidase domain AYP_RS17960 PF01795 MraW methylase family AYP_RS17975 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYP_RS17990 PF00324 Amino acid permease AYP_RS18020 PF01545 Cation efflux family AYP_RS18025 PF00873 AcrB/AcrD/AcrF family AYP_RS18030 PF00529 HlyD membrane-fusion protein of T1SS AYP_RS18030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_RS18050 PF04191 Phospholipid methyltransferase AYP_RS18075 PF00005 ABC transporter AYP_RS18075 PF12848 ABC transporter AYP_RS18080 PF01053 Cys/Met metabolism PLP-dependent enzyme AYP_RS18085 PF00106 short chain dehydrogenase AYP_RS18090 PF01740 STAS domain AYP_RS18090 PF00916 Sulfate permease family AYP_RS18095 PF16921 Tex protein YqgF-like domain AYP_RS18095 PF09371 Tex-like protein N-terminal domain AYP_RS18095 PF00575 S1 RNA binding domain AYP_RS18095 PF17674 HHH domain AYP_RS18100 PF00072 Response regulator receiver domain AYP_RS18100 PF00486 Transcriptional regulatory protein, C terminal AYP_RS18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS18105 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS18105 PF00672 HAMP domain AYP_RS18115 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AYP_RS18115 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AYP_RS18120 PF00583 Acetyltransferase (GNAT) family AYP_RS18140 PF00475 Imidazoleglycerol-phosphate dehydratase AYP_RS18145 PF00117 Glutamine amidotransferase class-I AYP_RS18160 PF00977 Histidine biosynthesis protein AYP_RS18175 PF03992 Antibiotic biosynthesis monooxygenase AYP_RS18190 PF01636 Phosphotransferase enzyme family AYP_RS18195 PF00977 Histidine biosynthesis protein AYP_RS18210 PF00230 Major intrinsic protein AYP_RS18235 PF02705 K+ potassium transporter AYP_RS18255 PF02525 Flavodoxin-like fold AYP_RS18265 PF01638 HxlR-like helix-turn-helix AYP_RS18295 PF02311 AraC-like ligand binding domain AYP_RS18295 PF12833 Helix-turn-helix domain AYP_RS18300 PF00248 Aldo/keto reductase family AYP_RS18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS18320 PF03466 LysR substrate binding domain AYP_RS18325 PF07690 Major Facilitator Superfamily AYP_RS18345 PF01593 Flavin containing amine oxidoreductase AYP_RS18350 PF05726 Pirin C-terminal cupin domain AYP_RS18350 PF02678 Pirin AYP_RS18355 PF00857 Isochorismatase family AYP_RS18360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS18365 PF00171 Aldehyde dehydrogenase family AYP_RS18370 PF00202 Aminotransferase class-III AYP_RS18375 PF00392 Bacterial regulatory proteins, gntR family AYP_RS18375 PF00155 Aminotransferase class I and II AYP_RS18380 PF00324 Amino acid permease AYP_RS18390 PF03591 AzlC protein AYP_RS18400 PF00436 Single-strand binding protein family AYP_RS18405 PF07690 Major Facilitator Superfamily AYP_RS18415 PF02581 Thiamine monophosphate synthase AYP_RS18415 PF03070 TENA/THI-4/PQQC family AYP_RS18415 PF08543 Phosphomethylpyrimidine kinase AYP_RS18420 PF06942 GlpM protein AYP_RS18430 PF00107 Zinc-binding dehydrogenase AYP_RS18430 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS18435 PF16925 Tetracyclin repressor-like, C-terminal domain AYP_RS18435 PF00440 Bacterial regulatory proteins, tetR family AYP_RS18440 PF17755 UvrA DNA-binding domain AYP_RS18440 PF00005 ABC transporter AYP_RS18440 PF17760 UvrA interaction domain AYP_RS18450 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS18460 PF02028 BCCT, betaine/carnitine/choline family transporter AYP_RS18470 PF00474 Sodium:solute symporter family AYP_RS18475 PF04341 Protein of unknown function, DUF485 AYP_RS18480 PF00072 Response regulator receiver domain AYP_RS18480 PF01627 Hpt domain AYP_RS18480 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS18480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS18480 PF00672 HAMP domain AYP_RS18490 PF00196 Bacterial regulatory proteins, luxR family AYP_RS18490 PF00072 Response regulator receiver domain AYP_RS18495 PF03358 NADPH-dependent FMN reductase AYP_RS18500 PF00296 Luciferase-like monooxygenase AYP_RS18505 PF00872 Transposase, Mutator family AYP_RS18510 PF01037 Lrp/AsnC ligand binding domain AYP_RS18515 PF00857 Isochorismatase family AYP_RS18520 PF13193 AMP-binding enzyme C-terminal domain AYP_RS18520 PF16177 Acetyl-coenzyme A synthetase N-terminus AYP_RS18520 PF00501 AMP-binding enzyme AYP_RS18530 PF00924 Mechanosensitive ion channel AYP_RS18535 PF04452 RNA methyltransferase AYP_RS18540 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYP_RS18545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_RS18565 PF02272 DHHA1 domain AYP_RS18565 PF17768 RecJ OB domain AYP_RS18565 PF01368 DHH family AYP_RS18570 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AYP_RS18570 PF01243 Pyridoxamine 5'-phosphate oxidase AYP_RS18575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYP_RS18575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYP_RS18575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYP_RS18575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYP_RS18580 PF00478 IMP dehydrogenase / GMP reductase domain AYP_RS18580 PF00571 CBS domain AYP_RS18585 PF03692 Putative zinc- or iron-chelating domain AYP_RS18590 PF01613 Flavin reductase like domain AYP_RS18590 PF00258 Flavodoxin AYP_RS18595 PF00593 TonB dependent receptor AYP_RS18595 PF07715 TonB-dependent Receptor Plug Domain AYP_RS18600 PF01169 Uncharacterized protein family UPF0016 AYP_RS18610 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYP_RS18610 PF02817 e3 binding domain AYP_RS18610 PF00364 Biotin-requiring enzyme AYP_RS18615 PF00456 Transketolase, thiamine diphosphate binding domain AYP_RS18615 PF17831 Pyruvate dehydrogenase E1 component middle domain AYP_RS18620 PF01551 Peptidase family M23 AYP_RS18630 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYP_RS18635 PF00091 Tubulin/FtsZ family, GTPase domain AYP_RS18635 PF12327 FtsZ family, C-terminal domain AYP_RS18640 PF02491 SHS2 domain inserted in FTSA AYP_RS18645 PF03799 Cell division protein FtsQ AYP_RS18645 PF08478 POTRA domain, FtsQ-type AYP_RS18650 PF07478 D-ala D-ala ligase C-terminus AYP_RS18650 PF01820 D-ala D-ala ligase N-terminus AYP_RS18655 PF08245 Mur ligase middle domain AYP_RS18655 PF01225 Mur ligase family, catalytic domain AYP_RS18655 PF02875 Mur ligase family, glutamate ligase domain AYP_RS18660 PF03033 Glycosyltransferase family 28 N-terminal domain AYP_RS18660 PF04101 Glycosyltransferase family 28 C-terminal domain AYP_RS18665 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYP_RS18665 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYP_RS18675 PF07715 TonB-dependent Receptor Plug Domain AYP_RS18675 PF00593 TonB dependent receptor AYP_RS18680 PF00156 Phosphoribosyl transferase domain AYP_RS18685 PF03372 Endonuclease/Exonuclease/phosphatase family AYP_RS18690 PF03960 ArsC family AYP_RS18700 PF07859 alpha/beta hydrolase fold AYP_RS18705 PF07694 5TMR of 5TMR-LYT AYP_RS18705 PF00990 Diguanylate cyclase, GGDEF domain AYP_RS18710 PF02683 Cytochrome C biogenesis protein transmembrane region AYP_RS18710 PF11412 Disulphide bond corrector protein DsbC AYP_RS18740 PF00576 HIUase/Transthyretin family AYP_RS18745 PF00860 Permease family AYP_RS18755 PF01494 FAD binding domain AYP_RS18760 PF03561 Allantoicase repeat AYP_RS18765 PF04115 Ureidoglycolate lyase AYP_RS18770 PF00106 short chain dehydrogenase AYP_RS18775 PF00204 DNA gyrase B AYP_RS18775 PF00986 DNA gyrase B subunit, carboxyl terminus AYP_RS18775 PF01751 Toprim domain AYP_RS18775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS18780 PF05728 Uncharacterised protein family (UPF0227) AYP_RS18795 PF01476 LysM domain AYP_RS18795 PF00877 NlpC/P60 family AYP_RS18800 PF13296 Putative type VI secretion system Rhs element Vgr AYP_RS18800 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AYP_RS18800 PF04717 Type VI secretion system, phage-baseplate injector AYP_RS18805 PF02600 Disulfide bond formation protein DsbB AYP_RS18810 PF04262 Glutamate-cysteine ligase AYP_RS18825 PF04286 Protein of unknown function (DUF445) AYP_RS18830 PF00155 Aminotransferase class I and II AYP_RS18835 PF01554 MatE AYP_RS18840 PF00106 short chain dehydrogenase AYP_RS18850 PF00072 Response regulator receiver domain AYP_RS18850 PF00486 Transcriptional regulatory protein, C terminal AYP_RS18855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYP_RS18855 PF00989 PAS fold AYP_RS18855 PF11808 Phosphate regulon sensor protein PhoR AYP_RS18855 PF00512 His Kinase A (phospho-acceptor) domain AYP_RS18875 PF03069 Acetamidase/Formamidase family AYP_RS18880 PF02666 Phosphatidylserine decarboxylase AYP_RS18885 PF00581 Rhodanese-like domain AYP_RS18890 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYP_RS18890 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AYP_RS18895 PF02580 D-Tyr-tRNA(Tyr) deacylase AYP_RS18925 PF00925 GTP cyclohydrolase II AYP_RS18925 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYP_RS18930 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYP_RS18935 PF01029 NusB family AYP_RS18940 PF02769 AIR synthase related protein, C-terminal domain AYP_RS18940 PF00586 AIR synthase related protein, N-terminal domain AYP_RS18945 PF04608 Phosphatidylglycerophosphatase A AYP_RS18950 PF00132 Bacterial transferase hexapeptide (six repeats) AYP_RS18950 PF14602 Hexapeptide repeat of succinyl-transferase AYP_RS18950 PF12804 MobA-like NTP transferase domain AYP_RS18955 PF01380 SIS domain AYP_RS18960 PF01177 Asp/Glu/Hydantoin racemase AYP_RS18975 PF00491 Arginase family AYP_RS18980 PF01979 Amidohydrolase family AYP_RS18985 PF00324 Amino acid permease AYP_RS18990 PF00221 Aromatic amino acid lyase AYP_RS18995 PF17392 Urocanase C-terminal domain AYP_RS18995 PF01175 Urocanase Rossmann-like domain AYP_RS18995 PF17391 Urocanase N-terminal domain AYP_RS19000 PF05962 HutD AYP_RS19005 PF00392 Bacterial regulatory proteins, gntR family AYP_RS19005 PF07702 UTRA domain AYP_RS19015 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYP_RS19015 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYP_RS19025 PF00324 Amino acid permease AYP_RS19035 PF14497 Glutathione S-transferase, C-terminal domain AYP_RS19035 PF02798 Glutathione S-transferase, N-terminal domain AYP_RS19040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_RS19050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYP_RS19055 PF04463 Protein of unknown function (DUF523) AYP_RS19060 PF01554 MatE AYP_RS19065 PF01758 Sodium Bile acid symporter family AYP_RS19070 PF00857 Isochorismatase family AYP_RS19075 PF00701 Dihydrodipicolinate synthetase family AYP_RS19085 PF01259 SAICAR synthetase AYP_RS19095 PF01226 Formate/nitrite transporter AYP_RS19100 PF16193 AAA C-terminal domain AYP_RS19100 PF12002 MgsA AAA+ ATPase C terminal AYP_RS19100 PF00004 ATPase family associated with various cellular activities (AAA) AYP_RS19105 PF07995 Glucose / Sorbosone dehydrogenase AYP_RS19110 PF03692 Putative zinc- or iron-chelating domain AYP_RS19115 PF07043 Protein of unknown function (DUF1328) AYP_RS19130 PF10576 Iron-sulfur binding domain of endonuclease III AYP_RS19130 PF00633 Helix-hairpin-helix motif AYP_RS19130 PF00730 HhH-GPD superfamily base excision DNA repair protein AYP_RS19130 PF14815 NUDIX domain AYP_RS19145 PF03352 Methyladenine glycosylase AYP_RS19150 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS19150 PF00107 Zinc-binding dehydrogenase AYP_RS19155 PF00155 Aminotransferase class I and II AYP_RS19155 PF00392 Bacterial regulatory proteins, gntR family AYP_RS19170 PF03466 LysR substrate binding domain AYP_RS19170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS19175 PF00248 Aldo/keto reductase family AYP_RS19180 PF07690 Major Facilitator Superfamily AYP_RS19190 PF05173 Dihydrodipicolinate reductase, C-terminus AYP_RS19190 PF01113 Dihydrodipicolinate reductase, N-terminus AYP_RS19200 PF01556 DnaJ C terminal domain AYP_RS19200 PF00226 DnaJ domain AYP_RS19200 PF00684 DnaJ central domain AYP_RS19210 PF00873 AcrB/AcrD/AcrF family AYP_RS19215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYP_RS19220 PF08361 MAATS-type transcriptional repressor, C-terminal region AYP_RS19220 PF00440 Bacterial regulatory proteins, tetR family AYP_RS19225 PF00311 Phosphoenolpyruvate carboxylase AYP_RS19230 PF00860 Permease family AYP_RS19235 PF03466 LysR substrate binding domain AYP_RS19235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYP_RS19250 PF00920 Dehydratase family AYP_RS19255 PF00551 Formyl transferase AYP_RS19255 PF02911 Formyl transferase, C-terminal domain AYP_RS19260 PF01189 16S rRNA methyltransferase RsmB/F AYP_RS19260 PF01029 NusB family AYP_RS19270 PF00209 Sodium:neurotransmitter symporter family AYP_RS19310 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYP_RS19315 PF07859 alpha/beta hydrolase fold AYP_RS19340 PF01025 GrpE AYP_RS19345 PF00012 Hsp70 protein AYP_RS19365 PF13406 Transglycosylase SLT domain AYP_RS19370 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYP_RS19370 PF02222 ATP-grasp domain AYP_RS19375 PF00731 AIR carboxylase AYP_RS19390 PF01225 Mur ligase family, catalytic domain AYP_RS19390 PF02875 Mur ligase family, glutamate ligase domain AYP_RS19390 PF08245 Mur ligase middle domain AYP_RS19400 PF01569 PAP2 superfamily AYP_RS19405 PF03741 Integral membrane protein TerC family AYP_RS19415 PF03738 Glutathionylspermidine synthase preATP-grasp AYP_RS19420 PF00355 Rieske [2Fe-2S] domain AYP_RS19425 PF01979 Amidohydrolase family AYP_RS19430 PF00156 Phosphoribosyl transferase domain AYP_RS19440 PF13098 Thioredoxin-like domain AYP_RS19440 PF10411 Disulfide bond isomerase protein N-terminus AYP_RS19445 PF16916 Dimerisation domain of Zinc Transporter AYP_RS19445 PF01545 Cation efflux family AYP_RS19450 PF02583 Metal-sensitive transcriptional repressor AYP_RS19455 PF10396 GTP-binding protein TrmE N-terminus AYP_RS19455 PF12631 MnmE helical domain AYP_RS19455 PF01926 50S ribosome-binding GTPase AYP_RS19460 PF02096 60Kd inner membrane protein AYP_RS19460 PF14849 YidC periplasmic domain AYP_RS19465 PF01809 Putative membrane protein insertion efficiency factor AYP_RS19470 PF00825 Ribonuclease P AYP_RS19475 PF00468 Ribosomal protein L34 AYP_RS19565 PF00005 ABC transporter AYP_RS19565 PF09383 NIL domain AYP_RS19585 PF17757 UvrB interaction domain AYP_RS19585 PF03461 TRCF domain AYP_RS19585 PF00271 Helicase conserved C-terminal domain AYP_RS19585 PF00270 DEAD/DEAH box helicase AYP_RS19585 PF02559 CarD-like/TRCF domain AYP_RS19600 PF03373 Octapeptide repeat AYP_RS19600 PF04650 YSIRK type signal peptide AYP_RS19600 PF00746 LPXTG cell wall anchor motif AYP_RS19600 PF02216 B domain AYP_RS19600 PF01476 LysM domain AYP_RS19670 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS19670 PF13823 Alcohol dehydrogenase GroES-associated AYP_RS19670 PF00107 Zinc-binding dehydrogenase AYP_RS19685 PF02583 Metal-sensitive transcriptional repressor AYP_RS19690 PF08240 Alcohol dehydrogenase GroES-like domain AYP_RS19690 PF00107 Zinc-binding dehydrogenase AYP_RS19695 PF00756 Putative esterase AYP_RS19705 PF00465 Iron-containing alcohol dehydrogenase AYP_RS19715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYP_RS19725 PF16925 Tetracyclin repressor-like, C-terminal domain AYP_RS19725 PF00440 Bacterial regulatory proteins, tetR family AYP_RS19735 PF16884 N-terminal domain of oxidoreductase AYP_RS19735 PF00107 Zinc-binding dehydrogenase AYP_RS19740 PF13737 Transposase DDE domain AYP_RS19780 PF00929 Exonuclease AYP_RS19815 PF00268 Ribonucleotide reductase, small chain AYP_RS19820 PF00317 Ribonucleotide reductase, all-alpha domain AYP_RS19820 PF03477 ATP cone domain AYP_RS19820 PF02867 Ribonucleotide reductase, barrel domain AYP_RS19840 PF02463 RecF/RecN/SMC N terminal domain AYP_RS19840 PF06470 SMC proteins Flexible Hinge Domain AYP_RS19870 PF00154 recA bacterial DNA recombination protein AYP_RS19870 PF03161 LAGLIDADG DNA endonuclease family AYP_RS19875 PF00476 DNA polymerase family A AYP_RS19875 PF01612 3'-5' exonuclease AYP_RS19875 PF01367 5'-3' exonuclease, C-terminal SAM fold AYP_RS19875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYP_RS19890 PF02811 PHP domain AYP_RS19890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYP_RS19890 PF14579 Helix-hairpin-helix motif AYP_RS19890 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYP_RS19900 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYP_RS19900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYP_RS19900 PF14579 Helix-hairpin-helix motif AYP_RS19900 PF02811 PHP domain AYP_RS19935 PF02899 Phage integrase, N-terminal SAM-like domain AYP_RS19935 PF00589 Phage integrase family AYP_RS19945 PF07015 VirC1 protein AYP_RS19960 PF00625 Guanylate kinase AYP_RS19990 PF01807 CHC2 zinc finger AYP_RS19990 PF08275 DNA primase catalytic core, N-terminal domain AYP_RS19990 PF10410 DnaB-helicase binding domain of primase