locus-tag class description RR41_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix RR41_RS00005 PF00308 Bacterial dnaA protein RR41_RS00005 PF11638 DnaA N-terminal domain RR41_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RR41_RS00010 PF02767 DNA polymerase III beta subunit, central domain RR41_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RR41_RS00015 PF02463 RecF/RecN/SMC N terminal domain RR41_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS00020 PF01751 Toprim domain RR41_RS00020 PF18053 DNA gyrase B subunit insert domain RR41_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus RR41_RS00020 PF00204 DNA gyrase B RR41_RS00030 PF09335 SNARE associated Golgi protein RR41_RS00035 PF12848 ABC transporter RR41_RS00035 PF00005 ABC transporter RR41_RS00055 PF01521 Iron-sulphur cluster biosynthesis RR41_RS00060 PF00561 alpha/beta hydrolase fold RR41_RS00065 PF03702 Anhydro-N-acetylmuramic acid kinase RR41_RS00070 PF00579 tRNA synthetases class I (W and Y) RR41_RS00110 PF00209 Sodium:neurotransmitter symporter family RR41_RS00120 PF01189 16S rRNA methyltransferase RsmB/F RR41_RS00120 PF01029 NusB family RR41_RS00125 PF02911 Formyl transferase, C-terminal domain RR41_RS00125 PF00551 Formyl transferase RR41_RS00130 PF00920 Dehydratase family RR41_RS00145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS00145 PF03466 LysR substrate binding domain RR41_RS00150 PF00860 Permease family RR41_RS00155 PF00311 Phosphoenolpyruvate carboxylase RR41_RS00160 PF08361 MAATS-type transcriptional repressor, C-terminal region RR41_RS00160 PF00440 Bacterial regulatory proteins, tetR family RR41_RS00165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS00170 PF00873 AcrB/AcrD/AcrF family RR41_RS00180 PF00684 DnaJ central domain RR41_RS00180 PF01556 DnaJ C terminal domain RR41_RS00180 PF00226 DnaJ domain RR41_RS00190 PF01113 Dihydrodipicolinate reductase, N-terminus RR41_RS00190 PF05173 Dihydrodipicolinate reductase, C-terminus RR41_RS00200 PF07690 Major Facilitator Superfamily RR41_RS00205 PF00248 Aldo/keto reductase family RR41_RS00210 PF03466 LysR substrate binding domain RR41_RS00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS00220 PF00155 Aminotransferase class I and II RR41_RS00220 PF00392 Bacterial regulatory proteins, gntR family RR41_RS00225 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS00225 PF00107 Zinc-binding dehydrogenase RR41_RS00230 PF03352 Methyladenine glycosylase RR41_RS00245 PF14815 NUDIX domain RR41_RS00245 PF00730 HhH-GPD superfamily base excision DNA repair protein RR41_RS00245 PF00633 Helix-hairpin-helix motif RR41_RS00245 PF10576 Iron-sulfur binding domain of endonuclease III RR41_RS00260 PF07043 Protein of unknown function (DUF1328) RR41_RS00265 PF03692 Putative zinc- or iron-chelating domain RR41_RS00270 PF07995 Glucose / Sorbosone dehydrogenase RR41_RS00275 PF00004 ATPase family associated with various cellular activities (AAA) RR41_RS00275 PF12002 MgsA AAA+ ATPase C terminal RR41_RS00275 PF16193 AAA C-terminal domain RR41_RS00280 PF01226 Formate/nitrite transporter RR41_RS00290 PF01259 SAICAR synthetase RR41_RS00300 PF00701 Dihydrodipicolinate synthetase family RR41_RS00305 PF00857 Isochorismatase family RR41_RS00310 PF01758 Sodium Bile acid symporter family RR41_RS00315 PF01554 MatE RR41_RS00320 PF04463 Protein of unknown function (DUF523) RR41_RS00325 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RR41_RS00335 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RR41_RS00340 PF14497 Glutathione S-transferase, C-terminal domain RR41_RS00340 PF02798 Glutathione S-transferase, N-terminal domain RR41_RS00350 PF00324 Amino acid permease RR41_RS00360 PF02492 CobW/HypB/UreG, nucleotide-binding domain RR41_RS00360 PF07683 Cobalamin synthesis protein cobW C-terminal domain RR41_RS00370 PF00392 Bacterial regulatory proteins, gntR family RR41_RS00370 PF07702 UTRA domain RR41_RS00375 PF05962 HutD RR41_RS00380 PF17392 Urocanase C-terminal domain RR41_RS00380 PF17391 Urocanase N-terminal domain RR41_RS00380 PF01175 Urocanase Rossmann-like domain RR41_RS00385 PF00221 Aromatic amino acid lyase RR41_RS00390 PF00324 Amino acid permease RR41_RS00395 PF01979 Amidohydrolase family RR41_RS00400 PF00491 Arginase family RR41_RS00415 PF01177 Asp/Glu/Hydantoin racemase RR41_RS00420 PF01380 SIS domain RR41_RS00425 PF12804 MobA-like NTP transferase domain RR41_RS00425 PF14602 Hexapeptide repeat of succinyl-transferase RR41_RS00425 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS00430 PF04608 Phosphatidylglycerophosphatase A RR41_RS00435 PF00586 AIR synthase related protein, N-terminal domain RR41_RS00435 PF02769 AIR synthase related protein, C-terminal domain RR41_RS00440 PF01029 NusB family RR41_RS00445 PF00885 6,7-dimethyl-8-ribityllumazine synthase RR41_RS00450 PF00925 GTP cyclohydrolase II RR41_RS00450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RR41_RS00475 PF02580 D-Tyr-tRNA(Tyr) deacylase RR41_RS00480 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RR41_RS00480 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RR41_RS00485 PF00581 Rhodanese-like domain RR41_RS00490 PF02666 Phosphatidylserine decarboxylase RR41_RS00500 PF11808 Phosphate regulon sensor protein PhoR RR41_RS00500 PF00989 PAS fold RR41_RS00500 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS00505 PF00486 Transcriptional regulatory protein, C terminal RR41_RS00505 PF00072 Response regulator receiver domain RR41_RS00515 PF00106 short chain dehydrogenase RR41_RS00520 PF01554 MatE RR41_RS00525 PF00155 Aminotransferase class I and II RR41_RS00530 PF04286 Protein of unknown function (DUF445) RR41_RS00545 PF04262 Glutamate-cysteine ligase RR41_RS00550 PF02600 Disulfide bond formation protein DsbB RR41_RS00565 PF01636 Phosphotransferase enzyme family RR41_RS00570 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase RR41_RS00590 PF17841 BID domain of Bartonella effector protein (Bep) RR41_RS00590 PF03389 MobA/MobL family RR41_RS00590 PF01443 Viral (Superfamily 1) RNA helicase RR41_RS00600 PF13610 DDE domain RR41_RS00610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RR41_RS00610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RR41_RS00610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RR41_RS00610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RR41_RS00615 PF00809 Pterin binding enzyme RR41_RS00630 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RR41_RS00630 PF04717 Type VI secretion system, phage-baseplate injector RR41_RS00630 PF13296 Putative type VI secretion system Rhs element Vgr RR41_RS00635 PF00665 Integrase core domain RR41_RS00635 PF13936 Helix-turn-helix domain RR41_RS00700 PF05728 Uncharacterised protein family (UPF0227) RR41_RS00705 PF01751 Toprim domain RR41_RS00705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS00705 PF00986 DNA gyrase B subunit, carboxyl terminus RR41_RS00705 PF00204 DNA gyrase B RR41_RS00710 PF00106 short chain dehydrogenase RR41_RS00715 PF04115 Ureidoglycolate lyase RR41_RS00720 PF03561 Allantoicase repeat RR41_RS00725 PF01494 FAD binding domain RR41_RS00735 PF00860 Permease family RR41_RS00740 PF00576 HIUase/Transthyretin family RR41_RS00770 PF02683 Cytochrome C biogenesis protein transmembrane region RR41_RS00770 PF11412 Disulphide bond corrector protein DsbC RR41_RS00775 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS00775 PF07694 5TMR of 5TMR-LYT RR41_RS00780 PF07859 alpha/beta hydrolase fold RR41_RS00790 PF03960 ArsC family RR41_RS00795 PF03372 Endonuclease/Exonuclease/phosphatase family RR41_RS00800 PF00156 Phosphoribosyl transferase domain RR41_RS00810 PF00593 TonB dependent receptor RR41_RS00810 PF07715 TonB-dependent Receptor Plug Domain RR41_RS00820 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RR41_RS00820 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RR41_RS00825 PF03033 Glycosyltransferase family 28 N-terminal domain RR41_RS00825 PF04101 Glycosyltransferase family 28 C-terminal domain RR41_RS00830 PF01225 Mur ligase family, catalytic domain RR41_RS00830 PF02875 Mur ligase family, glutamate ligase domain RR41_RS00830 PF08245 Mur ligase middle domain RR41_RS00835 PF01820 D-ala D-ala ligase N-terminus RR41_RS00835 PF07478 D-ala D-ala ligase C-terminus RR41_RS00840 PF08478 POTRA domain, FtsQ-type RR41_RS00840 PF03799 Cell division protein FtsQ RR41_RS00845 PF02491 SHS2 domain inserted in FTSA RR41_RS00850 PF00091 Tubulin/FtsZ family, GTPase domain RR41_RS00850 PF12327 FtsZ family, C-terminal domain RR41_RS00855 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RR41_RS00865 PF01551 Peptidase family M23 RR41_RS00870 PF17831 Pyruvate dehydrogenase E1 component middle domain RR41_RS00870 PF00456 Transketolase, thiamine diphosphate binding domain RR41_RS00875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RR41_RS00875 PF00364 Biotin-requiring enzyme RR41_RS00875 PF02817 e3 binding domain RR41_RS00885 PF01169 Uncharacterized protein family UPF0016 RR41_RS00890 PF07715 TonB-dependent Receptor Plug Domain RR41_RS00890 PF00593 TonB dependent receptor RR41_RS00895 PF01613 Flavin reductase like domain RR41_RS00895 PF00258 Flavodoxin RR41_RS00900 PF03692 Putative zinc- or iron-chelating domain RR41_RS00905 PF00478 IMP dehydrogenase / GMP reductase domain RR41_RS00905 PF00571 CBS domain RR41_RS00910 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RR41_RS00910 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RR41_RS00910 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RR41_RS00910 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RR41_RS00915 PF01243 Pyridoxamine 5'-phosphate oxidase RR41_RS00915 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RR41_RS00920 PF17768 RecJ OB domain RR41_RS00920 PF02272 DHHA1 domain RR41_RS00920 PF01368 DHH family RR41_RS00930 PF03462 PCRF domain RR41_RS00930 PF00472 RF-1 domain RR41_RS00940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR41_RS00945 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RR41_RS00950 PF04452 RNA methyltransferase RR41_RS00955 PF00924 Mechanosensitive ion channel RR41_RS00965 PF00501 AMP-binding enzyme RR41_RS00965 PF16177 Acetyl-coenzyme A synthetase N-terminus RR41_RS00965 PF13193 AMP-binding enzyme C-terminal domain RR41_RS00970 PF00857 Isochorismatase family RR41_RS00975 PF01037 Lrp/AsnC ligand binding domain RR41_RS00980 PF00296 Luciferase-like monooxygenase RR41_RS00985 PF03358 NADPH-dependent FMN reductase RR41_RS00990 PF00072 Response regulator receiver domain RR41_RS00990 PF00196 Bacterial regulatory proteins, luxR family RR41_RS01000 PF00672 HAMP domain RR41_RS01000 PF00072 Response regulator receiver domain RR41_RS01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS01000 PF01627 Hpt domain RR41_RS01000 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS01005 PF04341 Protein of unknown function, DUF485 RR41_RS01010 PF00474 Sodium:solute symporter family RR41_RS01020 PF02028 BCCT, betaine/carnitine/choline family transporter RR41_RS01030 PF13737 Transposase DDE domain RR41_RS01035 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS01040 PF00005 ABC transporter RR41_RS01040 PF17755 UvrA DNA-binding domain RR41_RS01040 PF17760 UvrA interaction domain RR41_RS01045 PF00440 Bacterial regulatory proteins, tetR family RR41_RS01045 PF16925 Tetracyclin repressor-like, C-terminal domain RR41_RS01050 PF00107 Zinc-binding dehydrogenase RR41_RS01050 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS01060 PF06942 GlpM protein RR41_RS01065 PF02581 Thiamine monophosphate synthase RR41_RS01065 PF08543 Phosphomethylpyrimidine kinase RR41_RS01065 PF03070 TENA/THI-4/PQQC family RR41_RS01075 PF07690 Major Facilitator Superfamily RR41_RS01080 PF00436 Single-strand binding protein family RR41_RS01090 PF03591 AzlC protein RR41_RS01100 PF00324 Amino acid permease RR41_RS01105 PF00392 Bacterial regulatory proteins, gntR family RR41_RS01105 PF00155 Aminotransferase class I and II RR41_RS01110 PF00202 Aminotransferase class-III RR41_RS01115 PF00171 Aldehyde dehydrogenase family RR41_RS01120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS01125 PF00857 Isochorismatase family RR41_RS01130 PF05726 Pirin C-terminal cupin domain RR41_RS01130 PF02678 Pirin RR41_RS01135 PF01593 Flavin containing amine oxidoreductase RR41_RS01155 PF07690 Major Facilitator Superfamily RR41_RS01160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS01160 PF03466 LysR substrate binding domain RR41_RS01205 PF13737 Transposase DDE domain RR41_RS01215 PF00248 Aldo/keto reductase family RR41_RS01235 PF00005 ABC transporter RR41_RS01245 PF12833 Helix-turn-helix domain RR41_RS01255 PF02705 K+ potassium transporter RR41_RS01280 PF00230 Major intrinsic protein RR41_RS01295 PF00977 Histidine biosynthesis protein RR41_RS01300 PF01636 Phosphotransferase enzyme family RR41_RS01315 PF03992 Antibiotic biosynthesis monooxygenase RR41_RS01330 PF00664 ABC transporter transmembrane region RR41_RS01330 PF00005 ABC transporter RR41_RS01335 PF00977 Histidine biosynthesis protein RR41_RS01350 PF00117 Glutamine amidotransferase class-I RR41_RS01355 PF00475 Imidazoleglycerol-phosphate dehydratase RR41_RS01375 PF00583 Acetyltransferase (GNAT) family RR41_RS01380 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RR41_RS01380 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RR41_RS01385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS01385 PF00672 HAMP domain RR41_RS01385 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS01390 PF00486 Transcriptional regulatory protein, C terminal RR41_RS01390 PF00072 Response regulator receiver domain RR41_RS01395 PF17674 HHH domain RR41_RS01395 PF00575 S1 RNA binding domain RR41_RS01395 PF09371 Tex-like protein N-terminal domain RR41_RS01395 PF16921 Tex protein YqgF-like domain RR41_RS01400 PF01740 STAS domain RR41_RS01400 PF00916 Sulfate permease family RR41_RS01405 PF00106 short chain dehydrogenase RR41_RS01410 PF01053 Cys/Met metabolism PLP-dependent enzyme RR41_RS01415 PF12848 ABC transporter RR41_RS01415 PF00005 ABC transporter RR41_RS01440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS01440 PF00529 HlyD membrane-fusion protein of T1SS RR41_RS01445 PF00873 AcrB/AcrD/AcrF family RR41_RS01450 PF01545 Cation efflux family RR41_RS01480 PF00324 Amino acid permease RR41_RS01495 PF00749 tRNA synthetases class I (E and Q), catalytic domain RR41_RS01510 PF01795 MraW methylase family RR41_RS01520 PF00905 Penicillin binding protein transpeptidase domain RR41_RS01520 PF03717 Penicillin-binding Protein dimerisation domain RR41_RS01525 PF02875 Mur ligase family, glutamate ligase domain RR41_RS01525 PF01225 Mur ligase family, catalytic domain RR41_RS01525 PF08245 Mur ligase middle domain RR41_RS01530 PF02875 Mur ligase family, glutamate ligase domain RR41_RS01530 PF08245 Mur ligase middle domain RR41_RS01530 PF01225 Mur ligase family, catalytic domain RR41_RS01535 PF00953 Glycosyl transferase family 4 RR41_RS01545 PF13847 Methyltransferase domain RR41_RS01550 PF17092 Penicillin-binding protein OB-like domain RR41_RS01550 PF00912 Transglycosylase RR41_RS01550 PF00905 Penicillin binding protein transpeptidase domain RR41_RS01555 PF11104 Type IV pilus assembly protein PilM; RR41_RS01560 PF05137 Fimbrial assembly protein (PilN) RR41_RS01565 PF04350 Pilus assembly protein, PilO RR41_RS01575 PF07660 Secretin and TonB N terminus short domain RR41_RS01575 PF03958 Bacterial type II/III secretion system short domain RR41_RS01575 PF00263 Bacterial type II and III secretion system protein RR41_RS01575 PF11741 AMIN domain RR41_RS01580 PF01202 Shikimate kinase RR41_RS01585 PF01761 3-dehydroquinate synthase RR41_RS01595 PF04898 Glutamate synthase central domain RR41_RS01595 PF00310 Glutamine amidotransferases class-II RR41_RS01595 PF01645 Conserved region in glutamate synthase RR41_RS01595 PF01493 GXGXG motif RR41_RS01600 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RR41_RS01600 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS01610 PF04011 LemA family RR41_RS01625 PF00114 Pilin (bacterial filament) RR41_RS01625 PF07963 Prokaryotic N-terminal methylation motif RR41_RS01635 PF04932 O-Antigen ligase RR41_RS01635 PF11846 Virulence factor membrane-bound polymerase, C-terminal RR41_RS01635 PF15864 Protein glycosylation ligase RR41_RS01640 PF00210 Ferritin-like domain RR41_RS01645 PF04324 BFD-like [2Fe-2S] binding domain RR41_RS01650 PF01042 Endoribonuclease L-PSP RR41_RS01655 PF04607 Region found in RelA / SpoT proteins RR41_RS01655 PF13291 ACT domain RR41_RS01655 PF02824 TGS domain RR41_RS01660 PF01192 RNA polymerase Rpb6 RR41_RS01665 PF00625 Guanylate kinase RR41_RS01670 PF02401 LytB protein RR41_RS01710 PF00886 Ribosomal protein S16 RR41_RS01715 PF05239 PRC-barrel domain RR41_RS01715 PF01782 RimM N-terminal domain RR41_RS01720 PF01746 tRNA (Guanine-1)-methyltransferase RR41_RS01725 PF01245 Ribosomal protein L19 RR41_RS01730 PF00561 alpha/beta hydrolase fold RR41_RS01735 PF03280 Proteobacterial lipase chaperone protein RR41_RS01740 PF16198 tRNA pseudouridylate synthase B C-terminal domain RR41_RS01740 PF01509 TruB family pseudouridylate synthase (N terminal domain) RR41_RS01740 PF09157 Pseudouridine synthase II TruB, C-terminal RR41_RS01745 PF01925 Sulfite exporter TauE/SafE RR41_RS01755 PF00892 EamA-like transporter family RR41_RS01760 PF00892 EamA-like transporter family RR41_RS01765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR41_RS01765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR41_RS01770 PF02913 FAD linked oxidases, C-terminal domain RR41_RS01770 PF01565 FAD binding domain RR41_RS01780 PF03992 Antibiotic biosynthesis monooxygenase RR41_RS01785 PF02525 Flavodoxin-like fold RR41_RS01795 PF07690 Major Facilitator Superfamily RR41_RS01800 PF12805 FUSC-like inner membrane protein yccS RR41_RS01805 PF00080 Copper/zinc superoxide dismutase (SODC) RR41_RS01810 PF01594 AI-2E family transporter RR41_RS01815 PF13614 AAA domain RR41_RS01835 PF08241 Methyltransferase domain RR41_RS01845 PF00324 Amino acid permease RR41_RS01850 PF13737 Transposase DDE domain RR41_RS01855 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RR41_RS01855 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RR41_RS01860 PF00202 Aminotransferase class-III RR41_RS01865 PF04958 Arginine N-succinyltransferase beta subunit RR41_RS01870 PF00171 Aldehyde dehydrogenase family RR41_RS01875 PF04996 Succinylarginine dihydrolase RR41_RS01880 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RR41_RS01895 PF00082 Subtilase family RR41_RS01895 PF05922 Peptidase inhibitor I9 RR41_RS01910 PF03466 LysR substrate binding domain RR41_RS01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS01915 PF00892 EamA-like transporter family RR41_RS01930 PF13737 Transposase DDE domain RR41_RS01940 PF02092 Glycyl-tRNA synthetase beta subunit RR41_RS01940 PF05746 DALR anticodon binding domain RR41_RS01945 PF02091 Glycyl-tRNA synthetase alpha subunit RR41_RS01970 PF00571 CBS domain RR41_RS01975 PF04024 PspC domain RR41_RS01985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS01985 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR41_RS01985 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS01985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS01995 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RR41_RS01995 PF01488 Shikimate / quinate 5-dehydrogenase RR41_RS01995 PF08501 Shikimate dehydrogenase substrate binding domain RR41_RS02000 PF01218 Coproporphyrinogen III oxidase RR41_RS02005 PF00925 GTP cyclohydrolase II RR41_RS02010 PF02779 Transketolase, pyrimidine binding domain RR41_RS02010 PF02780 Transketolase, C-terminal domain RR41_RS02010 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RR41_RS02015 PF00459 Inositol monophosphatase family RR41_RS02020 PF00270 DEAD/DEAH box helicase RR41_RS02020 PF12343 Cold shock protein DEAD box A RR41_RS02020 PF03880 DbpA RNA binding domain RR41_RS02020 PF00271 Helicase conserved C-terminal domain RR41_RS02030 PF00005 ABC transporter RR41_RS02035 PF02405 Permease MlaE RR41_RS02045 PF05494 MlaC protein RR41_RS02055 PF01544 CorA-like Mg2+ transporter protein RR41_RS02060 PF03641 Possible lysine decarboxylase RR41_RS02065 PF00293 NUDIX domain RR41_RS02070 PF00156 Phosphoribosyl transferase domain RR41_RS02075 PF00270 DEAD/DEAH box helicase RR41_RS02075 PF00271 Helicase conserved C-terminal domain RR41_RS02075 PF17191 RecG wedge domain RR41_RS02105 PF01553 Acyltransferase RR41_RS02115 PF00375 Sodium:dicarboxylate symporter family RR41_RS02125 PF01926 50S ribosome-binding GTPase RR41_RS02130 PF02082 Transcriptional regulator RR41_RS02135 PF00970 Oxidoreductase FAD-binding domain RR41_RS02135 PF00175 Oxidoreductase NAD-binding domain RR41_RS02135 PF00042 Globin RR41_RS02140 PF05872 Bacterial protein of unknown function (DUF853) RR41_RS02145 PF01053 Cys/Met metabolism PLP-dependent enzyme RR41_RS02150 PF00117 Glutamine amidotransferase class-I RR41_RS02155 PF00338 Ribosomal protein S10p/S20e RR41_RS02160 PF00297 Ribosomal protein L3 RR41_RS02165 PF00573 Ribosomal protein L4/L1 family RR41_RS02170 PF00276 Ribosomal protein L23 RR41_RS02175 PF03947 Ribosomal Proteins L2, C-terminal domain RR41_RS02175 PF00181 Ribosomal Proteins L2, RNA binding domain RR41_RS02180 PF00203 Ribosomal protein S19 RR41_RS02185 PF00237 Ribosomal protein L22p/L17e RR41_RS02190 PF00189 Ribosomal protein S3, C-terminal domain RR41_RS02190 PF07650 KH domain RR41_RS02195 PF00252 Ribosomal protein L16p/L10e RR41_RS02200 PF00831 Ribosomal L29 protein RR41_RS02205 PF00366 Ribosomal protein S17 RR41_RS02210 PF00238 Ribosomal protein L14p/L23e RR41_RS02215 PF00467 KOW motif RR41_RS02215 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RR41_RS02220 PF00281 Ribosomal protein L5 RR41_RS02220 PF00673 ribosomal L5P family C-terminus RR41_RS02225 PF00253 Ribosomal protein S14p/S29e RR41_RS02230 PF00410 Ribosomal protein S8 RR41_RS02235 PF00347 Ribosomal protein L6 RR41_RS02240 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RR41_RS02245 PF00333 Ribosomal protein S5, N-terminal domain RR41_RS02245 PF03719 Ribosomal protein S5, C-terminal domain RR41_RS02250 PF00327 Ribosomal protein L30p/L7e RR41_RS02255 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RR41_RS02260 PF00344 SecY translocase RR41_RS02265 PF00444 Ribosomal protein L36 RR41_RS02270 PF00416 Ribosomal protein S13/S18 RR41_RS02275 PF00411 Ribosomal protein S11 RR41_RS02280 PF00163 Ribosomal protein S4/S9 N-terminal domain RR41_RS02280 PF01479 S4 domain RR41_RS02285 PF01000 RNA polymerase Rpb3/RpoA insert domain RR41_RS02285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RR41_RS02285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RR41_RS02290 PF01196 Ribosomal protein L17 RR41_RS02295 PF00743 Flavin-binding monooxygenase-like RR41_RS02300 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS02300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS02300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS02305 PF03937 Flavinator of succinate dehydrogenase RR41_RS02335 PF09526 Probable metal-binding protein (DUF2387) RR41_RS02340 PF01432 Peptidase family M3 RR41_RS02345 PF00773 RNB domain RR41_RS02345 PF00575 S1 RNA binding domain RR41_RS02345 PF17876 Cold shock domain RR41_RS02345 PF08461 Ribonuclease R winged-helix domain RR41_RS02345 PF08206 Ribonuclease B OB domain RR41_RS02395 PF01557 Fumarylacetoacetate (FAA) hydrolase family RR41_RS02400 PF12833 Helix-turn-helix domain RR41_RS02410 PF03631 Virulence factor BrkB RR41_RS02415 PF03358 NADPH-dependent FMN reductase RR41_RS02440 PF02130 Uncharacterized protein family UPF0054 RR41_RS02445 PF02562 PhoH-like protein RR41_RS02450 PF04055 Radical SAM superfamily RR41_RS02450 PF01938 TRAM domain RR41_RS02450 PF00919 Uncharacterized protein family UPF0004 RR41_RS02455 PF01464 Transglycosylase SLT domain RR41_RS02455 PF01551 Peptidase family M23 RR41_RS02455 PF10145 Phage-related minor tail protein RR41_RS02465 PF00056 lactate/malate dehydrogenase, NAD binding domain RR41_RS02465 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RR41_RS02475 PF00872 Transposase, Mutator family RR41_RS02490 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RR41_RS02495 PF01066 CDP-alcohol phosphatidyltransferase RR41_RS02540 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS02540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS02540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS02545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR41_RS02545 PF00289 Biotin carboxylase, N-terminal domain RR41_RS02545 PF02785 Biotin carboxylase C-terminal domain RR41_RS02550 PF02785 Biotin carboxylase C-terminal domain RR41_RS02550 PF00364 Biotin-requiring enzyme RR41_RS02550 PF00289 Biotin carboxylase, N-terminal domain RR41_RS02550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR41_RS02560 PF04386 Stringent starvation protein B RR41_RS02565 PF02798 Glutathione S-transferase, N-terminal domain RR41_RS02565 PF00043 Glutathione S-transferase, C-terminal domain RR41_RS02570 PF00380 Ribosomal protein S9/S16 RR41_RS02575 PF00572 Ribosomal protein L13 RR41_RS02580 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RR41_RS02585 PF00398 Ribosomal RNA adenine dimethylase RR41_RS02590 PF00149 Calcineurin-like phosphoesterase RR41_RS02610 PF16360 GTP-binding GTPase Middle Region RR41_RS02610 PF13167 GTP-binding GTPase N-terminal RR41_RS02610 PF01926 50S ribosome-binding GTPase RR41_RS02620 PF13091 PLD-like domain RR41_RS02625 PF00149 Calcineurin-like phosphoesterase RR41_RS02625 PF10518 TAT (twin-arginine translocation) pathway signal sequence RR41_RS02630 PF01389 OmpA-like transmembrane domain RR41_RS02630 PF00691 OmpA family RR41_RS02635 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS02635 PF17152 Periplasmic sensor domain RR41_RS02670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR41_RS02670 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS02680 PF04273 Putative phosphatase (DUF442) RR41_RS02680 PF00753 Metallo-beta-lactamase superfamily RR41_RS02685 PF00561 alpha/beta hydrolase fold RR41_RS02690 PF00085 Thioredoxin RR41_RS02695 PF03061 Thioesterase superfamily RR41_RS02715 PF00872 Transposase, Mutator family RR41_RS02745 PF04945 YHS domain RR41_RS02750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS02750 PF00672 HAMP domain RR41_RS02750 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS02755 PF00486 Transcriptional regulatory protein, C terminal RR41_RS02755 PF00072 Response regulator receiver domain RR41_RS02765 PF07731 Multicopper oxidase RR41_RS02765 PF07732 Multicopper oxidase RR41_RS02765 PF00394 Multicopper oxidase RR41_RS02785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS02790 PF00873 AcrB/AcrD/AcrF family RR41_RS02800 PF07670 Nucleoside recognition RR41_RS02800 PF02421 Ferrous iron transport protein B RR41_RS02800 PF07664 Ferrous iron transport protein B C terminus RR41_RS02815 PF13411 MerR HTH family regulatory protein RR41_RS02820 PF00872 Transposase, Mutator family RR41_RS02845 PF13007 Transposase C of IS166 homeodomain RR41_RS02845 PF13817 IS66 C-terminal element RR41_RS02845 PF03050 Transposase IS66 family RR41_RS02845 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS02855 PF13356 Arm DNA-binding domain RR41_RS02855 PF00589 Phage integrase family RR41_RS02860 PF04461 Protein of unknown function (DUF520) RR41_RS02870 PF01266 FAD dependent oxidoreductase RR41_RS02870 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RR41_RS02880 PF03795 YCII-related domain RR41_RS02885 PF04279 Intracellular septation protein A RR41_RS02890 PF02811 PHP domain RR41_RS02895 PF01062 Bestrophin, RFP-TM, chloride channel RR41_RS02900 PF04002 RadC-like JAB domain RR41_RS02905 PF02441 Flavoprotein RR41_RS02905 PF04127 DNA / pantothenate metabolism flavoprotein RR41_RS02910 PF07549 SecD/SecF GG Motif RR41_RS02910 PF02355 Protein export membrane protein RR41_RS02915 PF07549 SecD/SecF GG Motif RR41_RS02915 PF13721 SecD export protein N-terminal TM region RR41_RS02915 PF02355 Protein export membrane protein RR41_RS02920 PF02699 Preprotein translocase subunit RR41_RS02925 PF01702 Queuine tRNA-ribosyltransferase RR41_RS02945 PF02547 Queuosine biosynthesis protein RR41_RS02955 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS02955 PF07689 KaiB domain RR41_RS02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS02960 PF08335 GlnD PII-uridylyltransferase RR41_RS02960 PF03710 Glutamate-ammonia ligase adenylyltransferase RR41_RS02965 PF01063 Amino-transferase class IV RR41_RS02980 PF01522 Polysaccharide deacetylase RR41_RS02985 PF00535 Glycosyl transferase family 2 RR41_RS02990 PF00534 Glycosyl transferases group 1 RR41_RS02990 PF13439 Glycosyltransferase Family 4 RR41_RS03005 PF02350 UDP-N-acetylglucosamine 2-epimerase RR41_RS03020 PF02938 GAD domain RR41_RS03020 PF00152 tRNA synthetases class II (D, K and N) RR41_RS03020 PF01336 OB-fold nucleic acid binding domain RR41_RS03030 PF00593 TonB dependent receptor RR41_RS03030 PF07715 TonB-dependent Receptor Plug Domain RR41_RS03050 PF06146 Phosphate-starvation-inducible E RR41_RS03055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS03055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS03055 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS03055 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR41_RS03060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS03060 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR41_RS03060 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS03060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS03070 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS03070 PF00672 HAMP domain RR41_RS03075 PF00072 Response regulator receiver domain RR41_RS03075 PF00486 Transcriptional regulatory protein, C terminal RR41_RS03080 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RR41_RS03095 PF03009 Glycerophosphoryl diester phosphodiesterase family RR41_RS03100 PF01923 Cobalamin adenosyltransferase RR41_RS03105 PF07715 TonB-dependent Receptor Plug Domain RR41_RS03105 PF00593 TonB dependent receptor RR41_RS03110 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RR41_RS03115 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS03140 PF00290 Tryptophan synthase alpha chain RR41_RS03145 PF01039 Carboxyl transferase domain RR41_RS03150 PF02875 Mur ligase family, glutamate ligase domain RR41_RS03150 PF08245 Mur ligase middle domain RR41_RS03165 PF00753 Metallo-beta-lactamase superfamily RR41_RS03170 PF00578 AhpC/TSA family RR41_RS03170 PF10417 C-terminal domain of 1-Cys peroxiredoxin RR41_RS03175 PF07517 SecA DEAD-like domain RR41_RS03175 PF07516 SecA Wing and Scaffold domain RR41_RS03175 PF02810 SEC-C motif RR41_RS03175 PF01043 SecA preprotein cross-linking domain RR41_RS03185 PF07690 Major Facilitator Superfamily RR41_RS03185 PF00083 Sugar (and other) transporter RR41_RS03190 PF03006 Haemolysin-III related RR41_RS03215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR41_RS03215 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS03215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR41_RS03220 PF02803 Thiolase, C-terminal domain RR41_RS03220 PF00108 Thiolase, N-terminal domain RR41_RS03225 PF02311 AraC-like ligand binding domain RR41_RS03225 PF12833 Helix-turn-helix domain RR41_RS03230 PF02515 CoA-transferase family III RR41_RS03235 PF04966 Carbohydrate-selective porin, OprB family RR41_RS03240 PF01011 PQQ enzyme repeat RR41_RS03245 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RR41_RS03245 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RR41_RS03255 PF00893 Small Multidrug Resistance protein RR41_RS03265 PF02803 Thiolase, C-terminal domain RR41_RS03265 PF00108 Thiolase, N-terminal domain RR41_RS03275 PF00691 OmpA family RR41_RS03275 PF13505 Outer membrane protein beta-barrel domain RR41_RS03285 PF01139 tRNA-splicing ligase RtcB RR41_RS03290 PF00324 Amino acid permease RR41_RS03295 PF05175 Methyltransferase small domain RR41_RS03295 PF08468 Methyltransferase small domain N-terminal RR41_RS03300 PF00860 Permease family RR41_RS03305 PF00009 Elongation factor Tu GTP binding domain RR41_RS03305 PF00679 Elongation factor G C-terminus RR41_RS03305 PF03144 Elongation factor Tu domain 2 RR41_RS03310 PF01741 Large-conductance mechanosensitive channel, MscL RR41_RS03325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RR41_RS03325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RR41_RS03325 PF06827 Zinc finger found in FPG and IleRS RR41_RS03330 PF02245 Methylpurine-DNA glycosylase (MPG) RR41_RS03335 PF00593 TonB dependent receptor RR41_RS03335 PF07715 TonB-dependent Receptor Plug Domain RR41_RS03340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR41_RS03355 PF13098 Thioredoxin-like domain RR41_RS03355 PF10411 Disulfide bond isomerase protein N-terminus RR41_RS03360 PF01571 Aminomethyltransferase folate-binding domain RR41_RS03370 PF04343 Protein of unknown function, DUF488 RR41_RS03375 PF03831 PhnA domain RR41_RS03375 PF08274 PhnA Zinc-Ribbon RR41_RS03380 PF07411 Domain of unknown function (DUF1508) RR41_RS03385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RR41_RS03385 PF03129 Anticodon binding domain RR41_RS03385 PF04073 Aminoacyl-tRNA editing domain RR41_RS03390 PF00873 AcrB/AcrD/AcrF family RR41_RS03405 PF00072 Response regulator receiver domain RR41_RS03410 PF00072 Response regulator receiver domain RR41_RS03415 PF01584 CheW-like domain RR41_RS03420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR41_RS03420 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RR41_RS03425 PF01584 CheW-like domain RR41_RS03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS03425 PF01627 Hpt domain RR41_RS03425 PF00072 Response regulator receiver domain RR41_RS03435 PF07687 Peptidase dimerisation domain RR41_RS03435 PF01546 Peptidase family M20/M25/M40 RR41_RS03440 PF08085 Entericidin EcnA/B family RR41_RS03450 PF04304 Protein of unknown function (DUF454) RR41_RS03455 PF17969 L,D-transpeptidase C-terminal domain RR41_RS03455 PF03734 L,D-transpeptidase catalytic domain RR41_RS03495 PF00175 Oxidoreductase NAD-binding domain RR41_RS03495 PF00258 Flavodoxin RR41_RS03495 PF00667 FAD binding domain RR41_RS03505 PF12805 FUSC-like inner membrane protein yccS RR41_RS03510 PF07690 Major Facilitator Superfamily RR41_RS03515 PF00881 Nitroreductase family RR41_RS03525 PF01235 Sodium:alanine symporter family RR41_RS03530 PF01734 Patatin-like phospholipase RR41_RS03535 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS03535 PF13291 ACT domain RR41_RS03540 PF05992 SbmA/BacA-like family RR41_RS03545 PF01431 Peptidase family M13 RR41_RS03545 PF05649 Peptidase family M13 RR41_RS03570 PF02934 GatB/GatE catalytic domain RR41_RS03570 PF02637 GatB domain RR41_RS03575 PF01425 Amidase RR41_RS03580 PF02686 Glu-tRNAGln amidotransferase C subunit RR41_RS03590 PF04085 rod shape-determining protein MreC RR41_RS03595 PF04093 rod shape-determining protein MreD RR41_RS03600 PF02545 Maf-like protein RR41_RS03605 PF00575 S1 RNA binding domain RR41_RS03605 PF10150 Ribonuclease E/G family RR41_RS03615 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RR41_RS03615 PF06974 Protein of unknown function (DUF1298) RR41_RS03620 PF01507 Phosphoadenosine phosphosulfate reductase family RR41_RS03640 PF02525 Flavodoxin-like fold RR41_RS03660 PF02673 Bacitracin resistance protein BacA RR41_RS03665 PF06719 AraC-type transcriptional regulator N-terminus RR41_RS03665 PF12833 Helix-turn-helix domain RR41_RS03670 PF14765 Polyketide synthase dehydratase RR41_RS03670 PF16197 Ketoacyl-synthetase C-terminal extension RR41_RS03670 PF00550 Phosphopantetheine attachment site RR41_RS03670 PF09277 Erythronolide synthase, docking RR41_RS03670 PF08990 Erythronolide synthase docking RR41_RS03670 PF02801 Beta-ketoacyl synthase, C-terminal domain RR41_RS03670 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS03670 PF00698 Acyl transferase domain RR41_RS03670 PF08659 KR domain RR41_RS03670 PF00109 Beta-ketoacyl synthase, N-terminal domain RR41_RS03675 PF01965 DJ-1/PfpI family RR41_RS03715 PF00324 Amino acid permease RR41_RS03720 PF04303 PrpF protein RR41_RS03725 PF00348 Polyprenyl synthetase RR41_RS03730 PF04237 YjbR RR41_RS03735 PF01145 SPFH domain / Band 7 family RR41_RS03745 PF01734 Patatin-like phospholipase RR41_RS03765 PF08019 Phosphoethanolamine transferase EptA/EptB RR41_RS03765 PF00884 Sulfatase RR41_RS03770 PF00072 Response regulator receiver domain RR41_RS03770 PF00486 Transcriptional regulatory protein, C terminal RR41_RS03775 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS03775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS03775 PF08521 Two-component sensor kinase N-terminal RR41_RS03785 PF00909 Ammonium Transporter Family RR41_RS03790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS03790 PF03466 LysR substrate binding domain RR41_RS03805 PF00872 Transposase, Mutator family RR41_RS03810 PF13649 Methyltransferase domain RR41_RS03815 PF08264 Anticodon-binding domain of tRNA RR41_RS03815 PF00133 tRNA synthetases class I (I, L, M and V) RR41_RS03815 PF10458 Valyl tRNA synthetase tRNA binding arm RR41_RS03835 PF01906 Putative heavy-metal-binding RR41_RS03840 PF01906 Putative heavy-metal-binding RR41_RS03855 PF03050 Transposase IS66 family RR41_RS03855 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS03855 PF13817 IS66 C-terminal element RR41_RS03855 PF13007 Transposase C of IS166 homeodomain RR41_RS03860 PF02321 Outer membrane efflux protein RR41_RS03865 PF00873 AcrB/AcrD/AcrF family RR41_RS03870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS03870 PF00529 HlyD membrane-fusion protein of T1SS RR41_RS03875 PF01569 PAP2 superfamily RR41_RS03895 PF03050 Transposase IS66 family RR41_RS03895 PF13817 IS66 C-terminal element RR41_RS03895 PF13007 Transposase C of IS166 homeodomain RR41_RS03895 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS03915 PF00348 Polyprenyl synthetase RR41_RS03925 PF00829 Ribosomal prokaryotic L21 protein RR41_RS03930 PF01016 Ribosomal L27 protein RR41_RS03935 PF03548 Outer membrane lipoprotein carrier protein LolA RR41_RS03945 PF02403 Seryl-tRNA synthetase N-terminal domain RR41_RS03945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RR41_RS03950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RR41_RS03950 PF14824 Sirohaem biosynthesis protein central RR41_RS03950 PF10414 Sirohaem synthase dimerisation region RR41_RS03955 PF00588 SpoU rRNA Methylase family RR41_RS03965 PF03358 NADPH-dependent FMN reductase RR41_RS03970 PF13520 Amino acid permease RR41_RS03975 PF00465 Iron-containing alcohol dehydrogenase RR41_RS03985 PF03099 Biotin/lipoate A/B protein ligase family RR41_RS03990 PF04359 Protein of unknown function (DUF493) RR41_RS03995 PF04545 Sigma-70, region 4 RR41_RS03995 PF00140 Sigma-70 factor, region 1.2 RR41_RS03995 PF04539 Sigma-70 region 3 RR41_RS03995 PF04542 Sigma-70 region 2 RR41_RS03995 PF03979 Sigma-70 factor, region 1.1 RR41_RS03995 PF04546 Sigma-70, non-essential region RR41_RS04010 PF17773 UPF0176 acylphosphatase like domain RR41_RS04010 PF00581 Rhodanese-like domain RR41_RS04020 PF00285 Citrate synthase, C-terminal domain RR41_RS04025 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RR41_RS04030 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RR41_RS04035 PF00890 FAD binding domain RR41_RS04035 PF02910 Fumarate reductase flavoprotein C-term RR41_RS04040 PF13085 2Fe-2S iron-sulfur cluster binding domain RR41_RS04045 PF02779 Transketolase, pyrimidine binding domain RR41_RS04045 PF16870 2-oxoglutarate dehydrogenase C-terminal RR41_RS04045 PF00676 Dehydrogenase E1 component RR41_RS04045 PF16078 2-oxoglutarate dehydrogenase N-terminus RR41_RS04050 PF00364 Biotin-requiring enzyme RR41_RS04050 PF02817 e3 binding domain RR41_RS04050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RR41_RS04055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR41_RS04055 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS04060 PF00549 CoA-ligase RR41_RS04060 PF08442 ATP-grasp domain RR41_RS04065 PF00549 CoA-ligase RR41_RS04065 PF02629 CoA binding domain RR41_RS04080 PF00579 tRNA synthetases class I (W and Y) RR41_RS04085 PF05661 Protein of unknown function (DUF808) RR41_RS04090 PF04228 Putative neutral zinc metallopeptidase RR41_RS04095 PF00999 Sodium/hydrogen exchanger family RR41_RS04100 PF00665 Integrase core domain RR41_RS04100 PF13936 Helix-turn-helix domain RR41_RS04125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RR41_RS04130 PF00582 Universal stress protein family RR41_RS04135 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS04140 PF01042 Endoribonuclease L-PSP RR41_RS04145 PF00440 Bacterial regulatory proteins, tetR family RR41_RS04150 PF03449 Transcription elongation factor, N-terminal RR41_RS04150 PF01272 Transcription elongation factor, GreA/GreB, C-term RR41_RS04155 PF02142 MGS-like domain RR41_RS04155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR41_RS04155 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RR41_RS04160 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RR41_RS04160 PF00117 Glutamine amidotransferase class-I RR41_RS04175 PF01985 CRS1 / YhbY (CRM) domain RR41_RS04180 PF01728 FtsJ-like methyltransferase RR41_RS04185 PF01434 Peptidase family M41 RR41_RS04185 PF17862 AAA+ lid domain RR41_RS04185 PF00004 ATPase family associated with various cellular activities (AAA) RR41_RS04185 PF06480 FtsH Extracellular RR41_RS04190 PF00809 Pterin binding enzyme RR41_RS04210 PF16655 PhoD-like phosphatase, N-terminal domain RR41_RS04210 PF09423 PhoD-like phosphatase RR41_RS04225 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RR41_RS04225 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RR41_RS04240 PF00083 Sugar (and other) transporter RR41_RS04245 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RR41_RS04245 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RR41_RS04250 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RR41_RS04250 PF01266 FAD dependent oxidoreductase RR41_RS04255 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RR41_RS04255 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RR41_RS04260 PF00781 Diacylglycerol kinase catalytic domain RR41_RS04265 PF00149 Calcineurin-like phosphoesterase RR41_RS04270 PF00166 Chaperonin 10 Kd subunit RR41_RS04275 PF00118 TCP-1/cpn60 chaperonin family RR41_RS04280 PF01219 Prokaryotic diacylglycerol kinase RR41_RS04290 PF03009 Glycerophosphoryl diester phosphodiesterase family RR41_RS04295 PF00873 AcrB/AcrD/AcrF family RR41_RS04305 PF01435 Peptidase family M48 RR41_RS04310 PF01464 Transglycosylase SLT domain RR41_RS04315 PF01171 PP-loop family RR41_RS04325 PF01464 Transglycosylase SLT domain RR41_RS04325 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR41_RS04330 PF03449 Transcription elongation factor, N-terminal RR41_RS04330 PF01272 Transcription elongation factor, GreA/GreB, C-term RR41_RS04345 PF13193 AMP-binding enzyme C-terminal domain RR41_RS04345 PF00501 AMP-binding enzyme RR41_RS04345 PF00550 Phosphopantetheine attachment site RR41_RS04345 PF00975 Thioesterase domain RR41_RS04345 PF00668 Condensation domain RR41_RS04360 PF00881 Nitroreductase family RR41_RS04375 PF02595 Glycerate kinase family RR41_RS04380 PF00384 Molybdopterin oxidoreductase RR41_RS04385 PF02634 FdhD/NarQ family RR41_RS04390 PF00665 Integrase core domain RR41_RS04390 PF13936 Helix-turn-helix domain RR41_RS04395 PF06803 Protein of unknown function (DUF1232) RR41_RS04400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR41_RS04400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR41_RS04400 PF11890 Domain of unknown function (DUF3410) RR41_RS04405 PF00152 tRNA synthetases class II (D, K and N) RR41_RS04415 PF18073 Rubredoxin metal binding domain RR41_RS04420 PF01235 Sodium:alanine symporter family RR41_RS04425 PF00324 Amino acid permease RR41_RS04435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RR41_RS04435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RR41_RS04440 PF01678 Diaminopimelate epimerase RR41_RS04445 PF00561 alpha/beta hydrolase fold RR41_RS04450 PF13936 Helix-turn-helix domain RR41_RS04450 PF00665 Integrase core domain RR41_RS04460 PF01810 LysE type translocator RR41_RS04465 PF02899 Phage integrase, N-terminal SAM-like domain RR41_RS04465 PF00589 Phage integrase family RR41_RS04470 PF01012 Electron transfer flavoprotein domain RR41_RS04475 PF01012 Electron transfer flavoprotein domain RR41_RS04475 PF00766 Electron transfer flavoprotein FAD-binding domain RR41_RS04480 PF00521 DNA gyrase/topoisomerase IV, subunit A RR41_RS04480 PF03989 DNA gyrase C-terminal domain, beta-propeller RR41_RS04495 PF00535 Glycosyl transferase family 2 RR41_RS04515 PF13533 Biotin-lipoyl like RR41_RS04525 PF00266 Aminotransferase class-V RR41_RS04535 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RR41_RS04545 PF02687 FtsX-like permease family RR41_RS04545 PF12704 MacB-like periplasmic core domain RR41_RS04550 PF00005 ABC transporter RR41_RS04555 PF13567 Domain of unknown function (DUF4131) RR41_RS04555 PF03772 Competence protein RR41_RS04555 PF00753 Metallo-beta-lactamase superfamily RR41_RS04560 PF13817 IS66 C-terminal element RR41_RS04560 PF03050 Transposase IS66 family RR41_RS04560 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS04560 PF13007 Transposase C of IS166 homeodomain RR41_RS04580 PF06965 Na+/H+ antiporter 1 RR41_RS04580 PF01343 Peptidase family S49 RR41_RS04585 PF12697 Alpha/beta hydrolase family RR41_RS04590 PF00551 Formyl transferase RR41_RS04595 PF00586 AIR synthase related protein, N-terminal domain RR41_RS04595 PF02769 AIR synthase related protein, C-terminal domain RR41_RS04600 PF01594 AI-2E family transporter RR41_RS04605 PF11638 DnaA N-terminal domain RR41_RS04605 PF00308 Bacterial dnaA protein RR41_RS04605 PF08299 Bacterial dnaA protein helix-turn-helix RR41_RS04635 PF08032 RNA 2'-O ribose methyltransferase substrate binding RR41_RS04635 PF00588 SpoU rRNA Methylase family RR41_RS04640 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RR41_RS04650 PF00691 OmpA family RR41_RS04655 PF04052 TolB amino-terminal domain RR41_RS04655 PF07676 WD40-like Beta Propeller Repeat RR41_RS04665 PF02472 Biopolymer transport protein ExbD/TolR RR41_RS04670 PF01618 MotA/TolQ/ExbB proton channel family RR41_RS04675 PF03061 Thioesterase superfamily RR41_RS04680 PF07687 Peptidase dimerisation domain RR41_RS04680 PF01546 Peptidase family M20/M25/M40 RR41_RS04685 PF05496 Holliday junction DNA helicase RuvB P-loop domain RR41_RS04685 PF17864 RuvB AAA lid domain RR41_RS04685 PF05491 RuvB C-terminal winged helix domain RR41_RS04690 PF01330 RuvA N terminal domain RR41_RS04690 PF07499 RuvA, C-terminal domain RR41_RS04695 PF01966 HD domain RR41_RS04700 PF02769 AIR synthase related protein, C-terminal domain RR41_RS04700 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RR41_RS04700 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RR41_RS04705 PF07690 Major Facilitator Superfamily RR41_RS04715 PF01784 NIF3 (NGG1p interacting factor 3) RR41_RS04720 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS04725 PF01467 Cytidylyltransferase-like RR41_RS04725 PF00293 NUDIX domain RR41_RS04735 PF00578 AhpC/TSA family RR41_RS04750 PF06508 Queuosine biosynthesis protein QueC RR41_RS04760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RR41_RS04760 PF14602 Hexapeptide repeat of succinyl-transferase RR41_RS04760 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS04770 PF03466 LysR substrate binding domain RR41_RS04770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS04775 PF12857 TOBE-like domain RR41_RS04775 PF00005 ABC transporter RR41_RS04780 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS04785 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS04800 PF01063 Amino-transferase class IV RR41_RS04805 PF02618 YceG-like family RR41_RS04810 PF02223 Thymidylate kinase RR41_RS04820 PF02910 Fumarate reductase flavoprotein C-term RR41_RS04820 PF00890 FAD binding domain RR41_RS04825 PF13180 PDZ domain RR41_RS04835 PF00679 Elongation factor G C-terminus RR41_RS04835 PF00009 Elongation factor Tu GTP binding domain RR41_RS04835 PF03144 Elongation factor Tu domain 2 RR41_RS04835 PF06421 GTP-binding protein LepA C-terminus RR41_RS04840 PF10502 Signal peptidase, peptidase S26 RR41_RS04850 PF00035 Double-stranded RNA binding motif RR41_RS04850 PF14622 Ribonuclease-III-like RR41_RS04855 PF01926 50S ribosome-binding GTPase RR41_RS04855 PF07650 KH domain RR41_RS04865 PF02565 Recombination protein O C terminal RR41_RS04865 PF11967 Recombination protein O N terminal RR41_RS04870 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RR41_RS04875 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RR41_RS04880 PF00106 short chain dehydrogenase RR41_RS04905 PF00012 Hsp70 protein RR41_RS04910 PF00665 Integrase core domain RR41_RS04910 PF13936 Helix-turn-helix domain RR41_RS04915 PF00012 Hsp70 protein RR41_RS04925 PF00155 Aminotransferase class I and II RR41_RS04935 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS04935 PF17151 Periplasmic sensor domain RR41_RS04945 PF12344 Ultra-violet resistance protein B RR41_RS04945 PF17757 UvrB interaction domain RR41_RS04945 PF02151 UvrB/uvrC motif RR41_RS04945 PF04851 Type III restriction enzyme, res subunit RR41_RS04945 PF00271 Helicase conserved C-terminal domain RR41_RS04955 PF00892 EamA-like transporter family RR41_RS04960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RR41_RS04960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RR41_RS04975 PF01926 50S ribosome-binding GTPase RR41_RS04975 PF01018 GTP1/OBG RR41_RS04980 PF00696 Amino acid kinase family RR41_RS04980 PF01472 PUA domain RR41_RS04990 PF07759 Protein of unknown function (DUF1615) RR41_RS04995 PF01207 Dihydrouridine synthase (Dus) RR41_RS05000 PF03060 Nitronate monooxygenase RR41_RS05015 PF02350 UDP-N-acetylglucosamine 2-epimerase RR41_RS05045 PF02322 Cytochrome bd terminal oxidase subunit II RR41_RS05050 PF01654 Cytochrome bd terminal oxidase subunit I RR41_RS05085 PF00875 DNA photolyase RR41_RS05085 PF03441 FAD binding domain of DNA photolyase RR41_RS05090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR41_RS05095 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS05100 PF00768 D-alanyl-D-alanine carboxypeptidase RR41_RS05100 PF07943 Penicillin-binding protein 5, C-terminal domain RR41_RS05110 PF03971 Monomeric isocitrate dehydrogenase RR41_RS05115 PF00849 RNA pseudouridylate synthase RR41_RS05120 PF00180 Isocitrate/isopropylmalate dehydrogenase RR41_RS05135 PF06779 Uncharacterised MFS-type transporter YbfB RR41_RS05140 PF03466 LysR substrate binding domain RR41_RS05140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS05145 PF00375 Sodium:dicarboxylate symporter family RR41_RS05150 PF02567 Phenazine biosynthesis-like protein RR41_RS05155 PF05193 Peptidase M16 inactive domain RR41_RS05155 PF00675 Insulinase (Peptidase family M16) RR41_RS05180 PF02581 Thiamine monophosphate synthase RR41_RS05185 PF00202 Aminotransferase class-III RR41_RS05195 PF00849 RNA pseudouridylate synthase RR41_RS05200 PF18339 RapA N-terminal Tudor like domain 1 RR41_RS05200 PF12137 RNA polymerase recycling family C-terminal RR41_RS05200 PF00271 Helicase conserved C-terminal domain RR41_RS05200 PF18337 RapA N-terminal Tudor like domain RR41_RS05200 PF00176 SNF2 family N-terminal domain RR41_RS05210 PF00440 Bacterial regulatory proteins, tetR family RR41_RS05215 PF00970 Oxidoreductase FAD-binding domain RR41_RS05215 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS05215 PF00175 Oxidoreductase NAD-binding domain RR41_RS05220 PF00487 Fatty acid desaturase RR41_RS05230 PF17754 MftR C-terminal domain RR41_RS05230 PF00440 Bacterial regulatory proteins, tetR family RR41_RS05240 PF00202 Aminotransferase class-III RR41_RS05245 PF00282 Pyridoxal-dependent decarboxylase conserved domain RR41_RS05250 PF00171 Aldehyde dehydrogenase family RR41_RS05255 PF01037 Lrp/AsnC ligand binding domain RR41_RS05260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RR41_RS05260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RR41_RS05260 PF00205 Thiamine pyrophosphate enzyme, central domain RR41_RS05265 PF00324 Amino acid permease RR41_RS05270 PF12849 PBP superfamily domain RR41_RS05275 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS05280 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS05285 PF00005 ABC transporter RR41_RS05290 PF08496 Peptidase family S49 N-terminal RR41_RS05290 PF01343 Peptidase family S49 RR41_RS05305 PF00206 Lyase RR41_RS05305 PF08328 Adenylosuccinate lyase C-terminal RR41_RS05310 PF04356 Protein of unknown function (DUF489) RR41_RS05320 PF00293 NUDIX domain RR41_RS05320 PF13344 Haloacid dehalogenase-like hydrolase RR41_RS05325 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS05330 PF00768 D-alanyl-D-alanine carboxypeptidase RR41_RS05330 PF07943 Penicillin-binding protein 5, C-terminal domain RR41_RS05345 PF01975 Survival protein SurE RR41_RS05350 PF01476 LysM domain RR41_RS05350 PF01551 Peptidase family M23 RR41_RS05355 PF03466 LysR substrate binding domain RR41_RS05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS05360 PF13654 AAA domain RR41_RS05360 PF05362 Lon protease (S16) C-terminal proteolytic domain RR41_RS05365 PF07690 Major Facilitator Superfamily RR41_RS05370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RR41_RS05375 PF13593 SBF-like CPA transporter family (DUF4137) RR41_RS05380 PF01197 Ribosomal protein L31 RR41_RS05385 PF12792 CSS motif domain associated with EAL RR41_RS05385 PF00563 EAL domain RR41_RS05395 PF04055 Radical SAM superfamily RR41_RS05400 PF08207 Elongation factor P (EF-P) KOW-like domain RR41_RS05400 PF01132 Elongation factor P (EF-P) OB domain RR41_RS05400 PF09285 Elongation factor P, C-terminal RR41_RS05405 PF13722 5TM C-terminal transporter carbon starvation CstA RR41_RS05405 PF02554 Carbon starvation protein CstA RR41_RS05410 PF04328 Selenoprotein, putative RR41_RS05430 PF17954 Quercetinase C-terminal cupin domain RR41_RS05430 PF02678 Pirin RR41_RS05435 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS05440 PF08348 YheO-like PAS domain RR41_RS05440 PF13309 HTH domain RR41_RS05450 PF00668 Condensation domain RR41_RS05450 PF00550 Phosphopantetheine attachment site RR41_RS05450 PF00501 AMP-binding enzyme RR41_RS05450 PF13193 AMP-binding enzyme C-terminal domain RR41_RS05455 PF00975 Thioesterase domain RR41_RS05455 PF00550 Phosphopantetheine attachment site RR41_RS05455 PF00668 Condensation domain RR41_RS05455 PF13193 AMP-binding enzyme C-terminal domain RR41_RS05455 PF00501 AMP-binding enzyme RR41_RS05460 PF01032 FecCD transport family RR41_RS05465 PF01032 FecCD transport family RR41_RS05470 PF00005 ABC transporter RR41_RS05475 PF01497 Periplasmic binding protein RR41_RS05480 PF00593 TonB dependent receptor RR41_RS05480 PF07715 TonB-dependent Receptor Plug Domain RR41_RS05485 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RR41_RS05490 PF00501 AMP-binding enzyme RR41_RS05490 PF00550 Phosphopantetheine attachment site RR41_RS05490 PF00668 Condensation domain RR41_RS05495 PF13193 AMP-binding enzyme C-terminal domain RR41_RS05495 PF00501 AMP-binding enzyme RR41_RS05500 PF00550 Phosphopantetheine attachment site RR41_RS05500 PF00857 Isochorismatase family RR41_RS05505 PF00282 Pyridoxal-dependent decarboxylase conserved domain RR41_RS05515 PF00005 ABC transporter RR41_RS05515 PF00664 ABC transporter transmembrane region RR41_RS05520 PF00005 ABC transporter RR41_RS05525 PF00975 Thioesterase domain RR41_RS05535 PF00425 chorismate binding enzyme RR41_RS05545 PF01208 Uroporphyrinogen decarboxylase (URO-D) RR41_RS05550 PF05675 Protein of unknown function (DUF817) RR41_RS05565 PF00144 Beta-lactamase RR41_RS05580 PF01227 GTP cyclohydrolase I RR41_RS05585 PF01799 [2Fe-2S] binding domain RR41_RS05585 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS05590 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR41_RS05590 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RR41_RS05605 PF00218 Indole-3-glycerol phosphate synthase RR41_RS05610 PF00591 Glycosyl transferase family, a/b domain RR41_RS05610 PF02885 Glycosyl transferase family, helical bundle domain RR41_RS05615 PF00593 TonB dependent receptor RR41_RS05615 PF07715 TonB-dependent Receptor Plug Domain RR41_RS05620 PF11838 ERAP1-like C-terminal domain RR41_RS05620 PF01433 Peptidase family M1 domain RR41_RS05630 PF00117 Glutamine amidotransferase class-I RR41_RS05640 PF00854 POT family RR41_RS05645 PF03951 Glutamine synthetase, beta-Grasp domain RR41_RS05645 PF00120 Glutamine synthetase, catalytic domain RR41_RS05650 PF04345 Chorismate lyase RR41_RS05655 PF01040 UbiA prenyltransferase family RR41_RS05690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RR41_RS05690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RR41_RS05695 PF01784 NIF3 (NGG1p interacting factor 3) RR41_RS05700 PF13180 PDZ domain RR41_RS05705 PF01743 Poly A polymerase head domain RR41_RS05705 PF12627 Probable RNA and SrmB- binding site of polymerase A RR41_RS05710 PF03949 Malic enzyme, NAD binding domain RR41_RS05710 PF01515 Phosphate acetyl/butaryl transferase RR41_RS05710 PF00390 Malic enzyme, N-terminal domain RR41_RS05715 PF03707 Bacterial signalling protein N terminal repeat RR41_RS05715 PF00563 EAL domain RR41_RS05715 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS05720 PF04452 RNA methyltransferase RR41_RS05725 PF02219 Methylenetetrahydrofolate reductase RR41_RS05730 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RR41_RS05730 PF05221 S-adenosyl-L-homocysteine hydrolase RR41_RS05745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS05745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS05745 PF09317 Domain of unknown function (DUF1974) RR41_RS05750 PF04055 Radical SAM superfamily RR41_RS05755 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS05755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR41_RS05770 PF07690 Major Facilitator Superfamily RR41_RS05780 PF00557 Metallopeptidase family M24 RR41_RS05785 PF00318 Ribosomal protein S2 RR41_RS05790 PF00889 Elongation factor TS RR41_RS05800 PF12833 Helix-turn-helix domain RR41_RS05820 PF05036 Sporulation related domain RR41_RS05820 PF03330 Lytic transglycolase RR41_RS05825 PF13406 Transglycosylase SLT domain RR41_RS05830 PF01098 Cell cycle protein RR41_RS05840 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RR41_RS05840 PF14489 QueF-like protein RR41_RS05845 PF01061 ABC-2 type transporter RR41_RS05850 PF00005 ABC transporter RR41_RS05860 PF01695 IstB-like ATP binding protein RR41_RS05955 PF00583 Acetyltransferase (GNAT) family RR41_RS06055 PF00464 Serine hydroxymethyltransferase RR41_RS06060 PF02321 Outer membrane efflux protein RR41_RS06065 PF00873 AcrB/AcrD/AcrF family RR41_RS06070 PF13533 Biotin-lipoyl like RR41_RS06075 PF03466 LysR substrate binding domain RR41_RS06075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS06080 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR41_RS06085 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS06090 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS06095 PF00005 ABC transporter RR41_RS06100 PF00893 Small Multidrug Resistance protein RR41_RS06105 PF12838 4Fe-4S dicluster domain RR41_RS06110 PF01136 Peptidase family U32 RR41_RS06110 PF16325 Peptidase family U32 C-terminal domain RR41_RS06115 PF00155 Aminotransferase class I and II RR41_RS06115 PF00392 Bacterial regulatory proteins, gntR family RR41_RS06120 PF02567 Phenazine biosynthesis-like protein RR41_RS06125 PF00970 Oxidoreductase FAD-binding domain RR41_RS06125 PF00175 Oxidoreductase NAD-binding domain RR41_RS06130 PF01980 tRNA-methyltransferase O RR41_RS06130 PF18389 TrmO C-terminal domain RR41_RS06140 PF00437 Type II/IV secretion system protein RR41_RS06140 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RR41_RS06150 PF00072 Response regulator receiver domain RR41_RS06150 PF00486 Transcriptional regulatory protein, C terminal RR41_RS06155 PF08521 Two-component sensor kinase N-terminal RR41_RS06155 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS06155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS06165 PF00293 NUDIX domain RR41_RS06175 PF14814 Bifunctional transglycosylase second domain RR41_RS06175 PF00905 Penicillin binding protein transpeptidase domain RR41_RS06175 PF00912 Transglycosylase RR41_RS06180 PF01513 ATP-NAD kinase RR41_RS06185 PF07023 Protein of unknown function (DUF1315) RR41_RS06190 PF00591 Glycosyl transferase family, a/b domain RR41_RS06190 PF02885 Glycosyl transferase family, helical bundle domain RR41_RS06195 PF00375 Sodium:dicarboxylate symporter family RR41_RS06200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS06200 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS06200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS06210 PF01842 ACT domain RR41_RS06210 PF01817 Chorismate mutase type II RR41_RS06210 PF00800 Prephenate dehydratase RR41_RS06215 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RR41_RS06225 PF07687 Peptidase dimerisation domain RR41_RS06225 PF01546 Peptidase family M20/M25/M40 RR41_RS06230 PF01137 RNA 3'-terminal phosphate cyclase RR41_RS06230 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain RR41_RS06250 PF00753 Metallo-beta-lactamase superfamily RR41_RS06255 PF06956 Regulator of RNA terminal phosphate cyclase RR41_RS06255 PF00158 Sigma-54 interaction domain RR41_RS06265 PF03883 Peroxide stress protein YaaA RR41_RS06275 PF05690 Thiazole biosynthesis protein ThiG RR41_RS06285 PF04241 Protein of unknown function (DUF423) RR41_RS06290 PF00140 Sigma-70 factor, region 1.2 RR41_RS06290 PF04545 Sigma-70, region 4 RR41_RS06290 PF04542 Sigma-70 region 2 RR41_RS06300 PF00313 'Cold-shock' DNA-binding domain RR41_RS06305 PF00271 Helicase conserved C-terminal domain RR41_RS06305 PF00270 DEAD/DEAH box helicase RR41_RS06315 PF00881 Nitroreductase family RR41_RS06320 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RR41_RS06320 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RR41_RS06340 PF01180 Dihydroorotate dehydrogenase RR41_RS06345 PF02674 Colicin V production protein RR41_RS06350 PF00156 Phosphoribosyl transferase domain RR41_RS06365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR41_RS06365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR41_RS06370 PF01435 Peptidase family M48 RR41_RS06375 PF09424 Yqey-like protein RR41_RS06380 PF01165 Ribosomal protein S21 RR41_RS06385 PF00814 Glycoprotease family RR41_RS06405 PF00069 Protein kinase domain RR41_RS06430 PF03466 LysR substrate binding domain RR41_RS06430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS06435 PF00202 Aminotransferase class-III RR41_RS06440 PF00171 Aldehyde dehydrogenase family RR41_RS06445 PF00324 Amino acid permease RR41_RS06475 PF04076 Bacterial OB fold (BOF) protein RR41_RS06500 PF00561 alpha/beta hydrolase fold RR41_RS06505 PF03616 Sodium/glutamate symporter RR41_RS06515 PF07729 FCD domain RR41_RS06515 PF00392 Bacterial regulatory proteins, gntR family RR41_RS06535 PF04403 Paraquat-inducible protein A RR41_RS06540 PF02470 MlaD protein RR41_RS06550 PF00576 HIUase/Transthyretin family RR41_RS06560 PF00072 Response regulator receiver domain RR41_RS06560 PF00486 Transcriptional regulatory protein, C terminal RR41_RS06565 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS06565 PF00672 HAMP domain RR41_RS06605 PF08521 Two-component sensor kinase N-terminal RR41_RS06605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS06605 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS06610 PF00072 Response regulator receiver domain RR41_RS06610 PF00486 Transcriptional regulatory protein, C terminal RR41_RS06630 PF01177 Asp/Glu/Hydantoin racemase RR41_RS06635 PF00892 EamA-like transporter family RR41_RS06640 PF07995 Glucose / Sorbosone dehydrogenase RR41_RS06660 PF00375 Sodium:dicarboxylate symporter family RR41_RS06670 PF16123 Hydroxyacylglutathione hydrolase C-terminus RR41_RS06670 PF00753 Metallo-beta-lactamase superfamily RR41_RS06675 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS06680 PF00005 ABC transporter RR41_RS06680 PF09383 NIL domain RR41_RS06685 PF03180 NLPA lipoprotein RR41_RS06690 PF02843 Phosphoribosylglycinamide synthetase, C domain RR41_RS06690 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RR41_RS06690 PF02844 Phosphoribosylglycinamide synthetase, N domain RR41_RS06695 PF02142 MGS-like domain RR41_RS06695 PF01808 AICARFT/IMPCHase bienzyme RR41_RS06700 PF02954 Bacterial regulatory protein, Fis family RR41_RS06720 PF13932 GidA associated domain RR41_RS06720 PF01134 Glucose inhibited division protein A RR41_RS06730 PF14403 Circularly permuted ATP-grasp type 2 RR41_RS06740 PF01841 Transglutaminase-like superfamily RR41_RS06740 PF08379 Bacterial transglutaminase-like N-terminal region RR41_RS06750 PF01168 Alanine racemase, N-terminal domain RR41_RS06750 PF00842 Alanine racemase, C-terminal domain RR41_RS06755 PF03796 DnaB-like helicase C terminal domain RR41_RS06755 PF00772 DnaB-like helicase N terminal domain RR41_RS06760 PF03948 Ribosomal protein L9, C-terminal domain RR41_RS06760 PF01281 Ribosomal protein L9, N-terminal domain RR41_RS06765 PF01084 Ribosomal protein S18 RR41_RS06770 PF01250 Ribosomal protein S6 RR41_RS06775 PF01040 UbiA prenyltransferase family RR41_RS06780 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RR41_RS06785 PF00510 Cytochrome c oxidase subunit III RR41_RS06790 PF00115 Cytochrome C and Quinol oxidase polypeptide I RR41_RS06795 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RR41_RS06795 PF06481 COX Aromatic Rich Motif RR41_RS06805 PF02896 PEP-utilising enzyme, TIM barrel domain RR41_RS06805 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RR41_RS06805 PF00391 PEP-utilising enzyme, mobile domain RR41_RS06810 PF03618 Kinase/pyrophosphorylase RR41_RS06820 PF01522 Polysaccharide deacetylase RR41_RS06820 PF14883 Hypothetical glycosyl hydrolase family 13 RR41_RS06825 PF00535 Glycosyl transferase family 2 RR41_RS06830 PF13994 PgaD-like protein RR41_RS06840 PF00296 Luciferase-like monooxygenase RR41_RS06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS06860 PF03466 LysR substrate binding domain RR41_RS06870 PF03462 PCRF domain RR41_RS06870 PF00472 RF-1 domain RR41_RS06875 PF13847 Methyltransferase domain RR41_RS06875 PF17827 PrmC N-terminal domain RR41_RS06880 PF12833 Helix-turn-helix domain RR41_RS06885 PF00106 short chain dehydrogenase RR41_RS06890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS06890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS06890 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS06895 PF00501 AMP-binding enzyme RR41_RS06895 PF13193 AMP-binding enzyme C-terminal domain RR41_RS06900 PF01613 Flavin reductase like domain RR41_RS06905 PF00899 ThiF family RR41_RS06910 PF03109 ABC1 family RR41_RS06925 PF03814 Potassium-transporting ATPase A subunit RR41_RS06935 PF02669 K+-transporting ATPase, c chain RR41_RS06940 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS06940 PF02702 Osmosensitive K+ channel His kinase sensor domain RR41_RS06940 PF13493 Domain of unknown function (DUF4118) RR41_RS06945 PF00486 Transcriptional regulatory protein, C terminal RR41_RS06945 PF00072 Response regulator receiver domain RR41_RS06960 PF00120 Glutamine synthetase, catalytic domain RR41_RS06970 PF03232 Ubiquinone biosynthesis protein COQ7 RR41_RS06975 PF07690 Major Facilitator Superfamily RR41_RS06980 PF07244 Surface antigen variable number repeat RR41_RS06980 PF01103 Surface antigen RR41_RS06980 PF17243 POTRA domain TamA domain 1 RR41_RS06995 PF11791 Aconitate B N-terminal domain RR41_RS06995 PF00330 Aconitase family (aconitate hydratase) RR41_RS06995 PF06434 Aconitate hydratase 2 N-terminus RR41_RS07005 PF13737 Transposase DDE domain RR41_RS07010 PF00027 Cyclic nucleotide-binding domain RR41_RS07010 PF00520 Ion transport protein RR41_RS07015 PF07690 Major Facilitator Superfamily RR41_RS07030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS07030 PF03466 LysR substrate binding domain RR41_RS07035 PF04284 Protein of unknown function (DUF441) RR41_RS07045 PF01479 S4 domain RR41_RS07045 PF00849 RNA pseudouridylate synthase RR41_RS07060 PF00849 RNA pseudouridylate synthase RR41_RS07060 PF01479 S4 domain RR41_RS07065 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RR41_RS07070 PF01119 DNA mismatch repair protein, C-terminal domain RR41_RS07070 PF08676 MutL C terminal dimerisation domain RR41_RS07080 PF17209 Hfq protein RR41_RS07100 PF00905 Penicillin binding protein transpeptidase domain RR41_RS07120 PF00881 Nitroreductase family RR41_RS07130 PF00149 Calcineurin-like phosphoesterase RR41_RS07135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RR41_RS07140 PF00749 tRNA synthetases class I (E and Q), catalytic domain RR41_RS07140 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RR41_RS07145 PF00958 GMP synthase C terminal domain RR41_RS07145 PF00117 Glutamine amidotransferase class-I RR41_RS07145 PF02540 NAD synthase RR41_RS07150 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RR41_RS07155 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RR41_RS07160 PF13520 Amino acid permease RR41_RS07165 PF00171 Aldehyde dehydrogenase family RR41_RS07180 PF00465 Iron-containing alcohol dehydrogenase RR41_RS07185 PF05970 PIF1-like helicase RR41_RS07185 PF14493 Helix-turn-helix domain RR41_RS07195 PF02110 Hydroxyethylthiazole kinase family RR41_RS07210 PF01433 Peptidase family M1 domain RR41_RS07210 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RR41_RS07210 PF11940 Domain of unknown function (DUF3458) Ig-like fold RR41_RS07225 PF13953 PapC C-terminal domain RR41_RS07225 PF00577 Outer membrane usher protein RR41_RS07225 PF13954 PapC N-terminal domain RR41_RS07255 PF01037 Lrp/AsnC ligand binding domain RR41_RS07265 PF00440 Bacterial regulatory proteins, tetR family RR41_RS07270 PF00593 TonB dependent receptor RR41_RS07270 PF07715 TonB-dependent Receptor Plug Domain RR41_RS07275 PF00924 Mechanosensitive ion channel RR41_RS07305 PF13007 Transposase C of IS166 homeodomain RR41_RS07305 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS07305 PF03050 Transposase IS66 family RR41_RS07305 PF13817 IS66 C-terminal element RR41_RS07320 PF00593 TonB dependent receptor RR41_RS07320 PF07715 TonB-dependent Receptor Plug Domain RR41_RS07335 PF13737 Transposase DDE domain RR41_RS07340 PF00005 ABC transporter RR41_RS07340 PF12848 ABC transporter RR41_RS07340 PF16326 ABC transporter C-terminal domain RR41_RS07345 PF00582 Universal stress protein family RR41_RS07365 PF00690 Cation transporter/ATPase, N-terminus RR41_RS07365 PF00689 Cation transporting ATPase, C-terminus RR41_RS07370 PF02308 MgtC family RR41_RS07375 PF03594 Benzoate membrane transport protein RR41_RS07380 PF01037 Lrp/AsnC ligand binding domain RR41_RS07385 PF01810 LysE type translocator RR41_RS07390 PF00923 Transaldolase/Fructose-6-phosphate aldolase RR41_RS07395 PF03466 LysR substrate binding domain RR41_RS07395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS07405 PF00108 Thiolase, N-terminal domain RR41_RS07405 PF02803 Thiolase, C-terminal domain RR41_RS07415 PF01575 MaoC like domain RR41_RS07420 PF00144 Beta-lactamase RR41_RS07430 PF07690 Major Facilitator Superfamily RR41_RS07445 PF12169 DNA polymerase III subunits gamma and tau domain III RR41_RS07445 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RR41_RS07445 PF12170 DNA polymerase III tau subunit V interacting with alpha RR41_RS07450 PF04185 Phosphoesterase family RR41_RS07450 PF05506 Domain of unknown function (DUF756) RR41_RS07455 PF03061 Thioesterase superfamily RR41_RS07460 PF00465 Iron-containing alcohol dehydrogenase RR41_RS07470 PF01451 Low molecular weight phosphotyrosine protein phosphatase RR41_RS07475 PF01565 FAD binding domain RR41_RS07475 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RR41_RS07500 PF01645 Conserved region in glutamate synthase RR41_RS07520 PF13737 Transposase DDE domain RR41_RS07560 PF13737 Transposase DDE domain RR41_RS07740 PF01551 Peptidase family M23 RR41_RS07740 PF08525 Opacity-associated protein A N-terminal motif RR41_RS07740 PF01476 LysM domain RR41_RS07805 PF13737 Transposase DDE domain RR41_RS07815 PF00817 impB/mucB/samB family RR41_RS07815 PF11798 IMS family HHH motif RR41_RS07815 PF13438 Domain of unknown function (DUF4113) RR41_RS07815 PF11799 impB/mucB/samB family C-terminal domain RR41_RS07820 PF00717 Peptidase S24-like RR41_RS07835 PF12832 MFS_1 like family RR41_RS07845 PF02785 Biotin carboxylase C-terminal domain RR41_RS07845 PF00289 Biotin carboxylase, N-terminal domain RR41_RS07845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR41_RS07850 PF00364 Biotin-requiring enzyme RR41_RS07855 PF01220 Dehydroquinase class II RR41_RS07860 PF13438 Domain of unknown function (DUF4113) RR41_RS07860 PF00817 impB/mucB/samB family RR41_RS07860 PF11799 impB/mucB/samB family C-terminal domain RR41_RS07865 PF00005 ABC transporter RR41_RS07870 PF00072 Response regulator receiver domain RR41_RS07870 PF00486 Transcriptional regulatory protein, C terminal RR41_RS07880 PF13806 Rieske-like [2Fe-2S] domain RR41_RS07880 PF18267 Rubredoxin NAD+ reductase C-terminal domain RR41_RS07880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RR41_RS07880 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS07880 PF04324 BFD-like [2Fe-2S] binding domain RR41_RS07880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RR41_RS07885 PF04324 BFD-like [2Fe-2S] binding domain RR41_RS07885 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RR41_RS07885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RR41_RS07885 PF18267 Rubredoxin NAD+ reductase C-terminal domain RR41_RS07885 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS07890 PF01568 Molydopterin dinucleotide binding domain RR41_RS07890 PF04324 BFD-like [2Fe-2S] binding domain RR41_RS07890 PF00384 Molybdopterin oxidoreductase RR41_RS07890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RR41_RS07895 PF12804 MobA-like NTP transferase domain RR41_RS07900 PF00384 Molybdopterin oxidoreductase RR41_RS07900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RR41_RS07900 PF01568 Molydopterin dinucleotide binding domain RR41_RS07905 PF04055 Radical SAM superfamily RR41_RS07905 PF06463 Molybdenum Cofactor Synthesis C RR41_RS07915 PF02391 MoaE protein RR41_RS07920 PF00994 Probable molybdopterin binding domain RR41_RS07920 PF01967 MoaC family RR41_RS07925 PF03454 MoeA C-terminal region (domain IV) RR41_RS07925 PF00994 Probable molybdopterin binding domain RR41_RS07925 PF03453 MoeA N-terminal region (domain I and II) RR41_RS07930 PF01638 HxlR-like helix-turn-helix RR41_RS07935 PF00155 Aminotransferase class I and II RR41_RS07935 PF00392 Bacterial regulatory proteins, gntR family RR41_RS07940 PF00892 EamA-like transporter family RR41_RS07960 PF02635 DsrE/DsrF-like family RR41_RS07965 PF16363 GDP-mannose 4,6 dehydratase RR41_RS07970 PF00206 Lyase RR41_RS07970 PF10415 Fumarase C C-terminus RR41_RS07990 PF01266 FAD dependent oxidoreductase RR41_RS08000 PF02542 YgbB family RR41_RS08020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RR41_RS08020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RR41_RS08025 PF00440 Bacterial regulatory proteins, tetR family RR41_RS08030 PF00072 Response regulator receiver domain RR41_RS08030 PF02954 Bacterial regulatory protein, Fis family RR41_RS08030 PF00158 Sigma-54 interaction domain RR41_RS08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS08035 PF00989 PAS fold RR41_RS08035 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS08040 PF04055 Radical SAM superfamily RR41_RS08040 PF18693 TRAM domain RR41_RS08040 PF00919 Uncharacterized protein family UPF0004 RR41_RS08045 PF00696 Amino acid kinase family RR41_RS08050 PF01765 Ribosome recycling factor RR41_RS08055 PF01255 Putative undecaprenyl diphosphate synthase RR41_RS08065 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RR41_RS08065 PF13288 DXP reductoisomerase C-terminal domain RR41_RS08065 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RR41_RS08070 PF13180 PDZ domain RR41_RS08070 PF17820 PDZ domain RR41_RS08070 PF02163 Peptidase family M50 RR41_RS08075 PF07244 Surface antigen variable number repeat RR41_RS08075 PF01103 Surface antigen RR41_RS08085 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS08085 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RR41_RS08090 PF07977 FabA-like domain RR41_RS08095 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS08095 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RR41_RS08105 PF02631 RecX family RR41_RS08110 PF00154 recA bacterial DNA recombination protein RR41_RS08115 PF01479 S4 domain RR41_RS08120 PF13419 Haloacid dehalogenase-like hydrolase RR41_RS08175 PF07007 Lysozyme inhibitor LprI RR41_RS08185 PF13737 Transposase DDE domain RR41_RS08205 PF04233 Phage Mu protein F like protein RR41_RS08355 PF02767 DNA polymerase III beta subunit, central domain RR41_RS08355 PF00712 DNA polymerase III beta subunit, N-terminal domain RR41_RS08355 PF02768 DNA polymerase III beta subunit, C-terminal domain RR41_RS08420 PF11798 IMS family HHH motif RR41_RS08420 PF13438 Domain of unknown function (DUF4113) RR41_RS08420 PF11799 impB/mucB/samB family C-terminal domain RR41_RS08420 PF00817 impB/mucB/samB family RR41_RS08425 PF00717 Peptidase S24-like RR41_RS08440 PF00589 Phage integrase family RR41_RS08440 PF13356 Arm DNA-binding domain RR41_RS08445 PF02216 B domain RR41_RS08445 PF00746 LPXTG cell wall anchor motif RR41_RS08445 PF01476 LysM domain RR41_RS08445 PF04650 YSIRK type signal peptide RR41_RS08445 PF03373 Octapeptide repeat RR41_RS08455 PF00733 Asparagine synthase RR41_RS08455 PF13537 Glutamine amidotransferase domain RR41_RS08475 PF00083 Sugar (and other) transporter RR41_RS08480 PF00701 Dihydrodipicolinate synthetase family RR41_RS08490 PF08281 Sigma-70, region 4 RR41_RS08490 PF04542 Sigma-70 region 2 RR41_RS08500 PF00593 TonB dependent receptor RR41_RS08500 PF07715 TonB-dependent Receptor Plug Domain RR41_RS08510 PF04575 Protein of unknown function (DUF560) RR41_RS08520 PF01126 Heme oxygenase RR41_RS08545 PF13520 Amino acid permease RR41_RS08550 PF02574 Homocysteine S-methyltransferase RR41_RS08560 PF06039 Malate:quinone oxidoreductase (Mqo) RR41_RS08565 PF05199 GMC oxidoreductase RR41_RS08565 PF00732 GMC oxidoreductase RR41_RS08570 PF00171 Aldehyde dehydrogenase family RR41_RS08575 PF13977 BetI-type transcriptional repressor, C-terminal RR41_RS08575 PF00440 Bacterial regulatory proteins, tetR family RR41_RS08580 PF02028 BCCT, betaine/carnitine/choline family transporter RR41_RS08585 PF02028 BCCT, betaine/carnitine/choline family transporter RR41_RS08595 PF03061 Thioesterase superfamily RR41_RS08605 PF07683 Cobalamin synthesis protein cobW C-terminal domain RR41_RS08605 PF02492 CobW/HypB/UreG, nucleotide-binding domain RR41_RS08610 PF00375 Sodium:dicarboxylate symporter family RR41_RS08615 PF07152 YaeQ protein RR41_RS08620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR41_RS08625 PF01522 Polysaccharide deacetylase RR41_RS08625 PF14883 Hypothetical glycosyl hydrolase family 13 RR41_RS08630 PF00535 Glycosyl transferase family 2 RR41_RS08640 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS08655 PF09339 IclR helix-turn-helix domain RR41_RS08655 PF01614 Bacterial transcriptional regulator RR41_RS08670 PF00355 Rieske [2Fe-2S] domain RR41_RS08680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RR41_RS08685 PF14759 Reductase C-terminal RR41_RS08685 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS08690 PF07690 Major Facilitator Superfamily RR41_RS08700 PF12697 Alpha/beta hydrolase family RR41_RS08710 PF03447 Homoserine dehydrogenase, NAD binding domain RR41_RS08710 PF01958 Domain of unknown function DUF108 RR41_RS08715 PF00171 Aldehyde dehydrogenase family RR41_RS08720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RR41_RS08720 PF00205 Thiamine pyrophosphate enzyme, central domain RR41_RS08720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RR41_RS08730 PF07690 Major Facilitator Superfamily RR41_RS08735 PF01327 Polypeptide deformylase RR41_RS08740 PF04960 Glutaminase RR41_RS08745 PF02311 AraC-like ligand binding domain RR41_RS08745 PF12833 Helix-turn-helix domain RR41_RS08750 PF07690 Major Facilitator Superfamily RR41_RS08755 PF13737 Transposase DDE domain RR41_RS08760 PF07690 Major Facilitator Superfamily RR41_RS08765 PF01263 Aldose 1-epimerase RR41_RS08785 PF13936 Helix-turn-helix domain RR41_RS08785 PF00665 Integrase core domain RR41_RS08790 PF02310 B12 binding domain RR41_RS08790 PF02607 B12 binding domain RR41_RS08790 PF02965 Vitamin B12 dependent methionine synthase, activation domain RR41_RS08790 PF00809 Pterin binding enzyme RR41_RS08790 PF02574 Homocysteine S-methyltransferase RR41_RS08795 PF01384 Phosphate transporter family RR41_RS08800 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS08815 PF03781 Sulfatase-modifying factor enzyme 1 RR41_RS08820 PF00884 Sulfatase RR41_RS08830 PF01106 NifU-like domain RR41_RS08830 PF01521 Iron-sulphur cluster biosynthesis RR41_RS08835 PF07715 TonB-dependent Receptor Plug Domain RR41_RS08835 PF00593 TonB dependent receptor RR41_RS08845 PF00561 alpha/beta hydrolase fold RR41_RS08850 PF00484 Carbonic anhydrase RR41_RS08855 PF13472 GDSL-like Lipase/Acylhydrolase family RR41_RS08860 PF00005 ABC transporter RR41_RS08870 PF01694 Rhomboid family RR41_RS08875 PF00912 Transglycosylase RR41_RS08880 PF17941 Polyphosphate kinase C-terminal domain 1 RR41_RS08880 PF02503 Polyphosphate kinase middle domain RR41_RS08880 PF13090 Polyphosphate kinase C-terminal domain 2 RR41_RS08880 PF13089 Polyphosphate kinase N-terminal domain RR41_RS08890 PF03466 LysR substrate binding domain RR41_RS08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS08895 PF00561 alpha/beta hydrolase fold RR41_RS08900 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS08900 PF18113 Rubredoxin binding C-terminal domain RR41_RS08905 PF00301 Rubredoxin RR41_RS08920 PF00152 tRNA synthetases class II (D, K and N) RR41_RS08920 PF01336 OB-fold nucleic acid binding domain RR41_RS08925 PF14052 Capsule assembly protein Wzi RR41_RS08930 PF01507 Phosphoadenosine phosphosulfate reductase family RR41_RS08935 PF00009 Elongation factor Tu GTP binding domain RR41_RS08950 PF03600 Citrate transporter RR41_RS08955 PF01595 Cyclin M transmembrane N-terminal domain RR41_RS08955 PF03471 Transporter associated domain RR41_RS08955 PF00571 CBS domain RR41_RS08960 PF03466 LysR substrate binding domain RR41_RS08960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS08965 PF00463 Isocitrate lyase family RR41_RS08980 PF01774 UreD urease accessory protein RR41_RS08985 PF00547 Urease, gamma subunit RR41_RS08990 PF00699 Urease beta subunit RR41_RS08995 PF00449 Urease alpha-subunit, N-terminal domain RR41_RS08995 PF01979 Amidohydrolase family RR41_RS09000 PF05194 UreE urease accessory protein, C-terminal domain RR41_RS09000 PF02814 UreE urease accessory protein, N-terminal domain RR41_RS09005 PF01730 UreF RR41_RS09010 PF02492 CobW/HypB/UreG, nucleotide-binding domain RR41_RS09025 PF03717 Penicillin-binding Protein dimerisation domain RR41_RS09025 PF00905 Penicillin binding protein transpeptidase domain RR41_RS09040 PF05191 Adenylate kinase, active site lid RR41_RS09045 PF10576 Iron-sulfur binding domain of endonuclease III RR41_RS09045 PF00730 HhH-GPD superfamily base excision DNA repair protein RR41_RS09045 PF00633 Helix-hairpin-helix motif RR41_RS09050 PF04060 Putative Fe-S cluster RR41_RS09055 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RR41_RS09055 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RR41_RS09065 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RR41_RS09070 PF02590 Predicted SPOUT methyltransferase RR41_RS09075 PF02190 ATP-dependent protease La (LON) substrate-binding domain RR41_RS09075 PF00004 ATPase family associated with various cellular activities (AAA) RR41_RS09075 PF05362 Lon protease (S16) C-terminal proteolytic domain RR41_RS09100 PF01507 Phosphoadenosine phosphosulfate reductase family RR41_RS09105 PF01812 5-formyltetrahydrofolate cyclo-ligase family RR41_RS09205 PF00872 Transposase, Mutator family RR41_RS09230 PF00557 Metallopeptidase family M24 RR41_RS09230 PF05195 Aminopeptidase P, N-terminal domain RR41_RS09235 PF01494 FAD binding domain RR41_RS09240 PF01494 FAD binding domain RR41_RS09250 PF13411 MerR HTH family regulatory protein RR41_RS09260 PF01810 LysE type translocator RR41_RS09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS09265 PF03466 LysR substrate binding domain RR41_RS09275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RR41_RS09280 PF02021 Uncharacterised protein family UPF0102 RR41_RS09285 PF04972 BON domain RR41_RS09295 PF09297 NADH pyrophosphatase zinc ribbon domain RR41_RS09295 PF00293 NUDIX domain RR41_RS09305 PF00929 Exonuclease RR41_RS09310 PF01476 LysM domain RR41_RS09310 PF01464 Transglycosylase SLT domain RR41_RS09315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR41_RS09320 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS09325 PF12911 N-terminal TM domain of oligopeptide transport permease C RR41_RS09325 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS09330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR41_RS09330 PF00005 ABC transporter RR41_RS09335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR41_RS09335 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS09340 PF07715 TonB-dependent Receptor Plug Domain RR41_RS09340 PF00593 TonB dependent receptor RR41_RS09350 PF00929 Exonuclease RR41_RS09355 PF01979 Amidohydrolase family RR41_RS09360 PF00360 Phytochrome region RR41_RS09360 PF00563 EAL domain RR41_RS09360 PF01590 GAF domain RR41_RS09360 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS09365 PF00764 Arginosuccinate synthase RR41_RS09370 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR41_RS09370 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS09380 PF00589 Phage integrase family RR41_RS09380 PF13356 Arm DNA-binding domain RR41_RS09390 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS09390 PF13007 Transposase C of IS166 homeodomain RR41_RS09390 PF03050 Transposase IS66 family RR41_RS09390 PF13817 IS66 C-terminal element RR41_RS09405 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RR41_RS09410 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system RR41_RS09430 PF13737 Transposase DDE domain RR41_RS09530 PF16124 RecQ zinc-binding RR41_RS09530 PF00570 HRDC domain RR41_RS09530 PF09382 RQC domain RR41_RS09530 PF00270 DEAD/DEAH box helicase RR41_RS09530 PF00271 Helicase conserved C-terminal domain RR41_RS09555 PF13086 AAA domain RR41_RS09555 PF13195 Protein of unknown function (DUF4011) RR41_RS09555 PF13087 AAA domain RR41_RS09555 PF13087 AAA domain RR41_RS09555 PF13195 Protein of unknown function (DUF4011) RR41_RS09555 PF13086 AAA domain RR41_RS09580 PF05987 Bacterial protein of unknown function (DUF898) RR41_RS09585 PF03180 NLPA lipoprotein RR41_RS09605 PF00665 Integrase core domain RR41_RS09605 PF13936 Helix-turn-helix domain RR41_RS09610 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RR41_RS09610 PF04717 Type VI secretion system, phage-baseplate injector RR41_RS09610 PF13296 Putative type VI secretion system Rhs element Vgr RR41_RS09635 PF00665 Integrase core domain RR41_RS09635 PF13936 Helix-turn-helix domain RR41_RS09665 PF13007 Transposase C of IS166 homeodomain RR41_RS09665 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS09665 PF13817 IS66 C-terminal element RR41_RS09665 PF03050 Transposase IS66 family RR41_RS09670 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS09670 PF13007 Transposase C of IS166 homeodomain RR41_RS09670 PF13817 IS66 C-terminal element RR41_RS09670 PF03050 Transposase IS66 family RR41_RS09675 PF00324 Amino acid permease RR41_RS09680 PF01266 FAD dependent oxidoreductase RR41_RS09685 PF00324 Amino acid permease RR41_RS09695 PF07729 FCD domain RR41_RS09695 PF00392 Bacterial regulatory proteins, gntR family RR41_RS09705 PF00171 Aldehyde dehydrogenase family RR41_RS09715 PF00202 Aminotransferase class-III RR41_RS09720 PF04958 Arginine N-succinyltransferase beta subunit RR41_RS09725 PF00324 Amino acid permease RR41_RS09730 PF13737 Transposase DDE domain RR41_RS09745 PF00171 Aldehyde dehydrogenase family RR41_RS09750 PF12833 Helix-turn-helix domain RR41_RS09750 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RR41_RS09755 PF00892 EamA-like transporter family RR41_RS09765 PF07690 Major Facilitator Superfamily RR41_RS09770 PF13378 Enolase C-terminal domain-like RR41_RS09775 PF00701 Dihydrodipicolinate synthetase family RR41_RS09780 PF00171 Aldehyde dehydrogenase family RR41_RS09785 PF07729 FCD domain RR41_RS09785 PF00392 Bacterial regulatory proteins, gntR family RR41_RS09790 PF07519 Tannase and feruloyl esterase RR41_RS09805 PF03573 outer membrane porin, OprD family RR41_RS09810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS09810 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS09810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS09820 PF00171 Aldehyde dehydrogenase family RR41_RS09825 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS09830 PF07690 Major Facilitator Superfamily RR41_RS09845 PF00175 Oxidoreductase NAD-binding domain RR41_RS09845 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS09850 PF00355 Rieske [2Fe-2S] domain RR41_RS09860 PF03781 Sulfatase-modifying factor enzyme 1 RR41_RS09865 PF00884 Sulfatase RR41_RS09880 PF07690 Major Facilitator Superfamily RR41_RS09885 PF03573 outer membrane porin, OprD family RR41_RS09890 PF05199 GMC oxidoreductase RR41_RS09895 PF07859 alpha/beta hydrolase fold RR41_RS09900 PF00106 short chain dehydrogenase RR41_RS09905 PF00743 Flavin-binding monooxygenase-like RR41_RS09915 PF04072 Leucine carboxyl methyltransferase RR41_RS09920 PF00743 Flavin-binding monooxygenase-like RR41_RS09925 PF00106 short chain dehydrogenase RR41_RS09935 PF17932 Tetracyclin repressor-like, C-terminal domain RR41_RS09935 PF00440 Bacterial regulatory proteins, tetR family RR41_RS09940 PF17954 Quercetinase C-terminal cupin domain RR41_RS09940 PF02678 Pirin RR41_RS09950 PF00106 short chain dehydrogenase RR41_RS09955 PF00743 Flavin-binding monooxygenase-like RR41_RS09965 PF00860 Permease family RR41_RS09970 PF00962 Adenosine/AMP deaminase RR41_RS09975 PF01292 Prokaryotic cytochrome b561 RR41_RS09985 PF01351 Ribonuclease HII RR41_RS09990 PF02599 Global regulator protein family RR41_RS09995 PF00696 Amino acid kinase family RR41_RS09995 PF01842 ACT domain RR41_RS09995 PF13840 ACT domain RR41_RS10000 PF01411 tRNA synthetases class II (A) RR41_RS10000 PF02272 DHHA1 domain RR41_RS10000 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RR41_RS10005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RR41_RS10005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RR41_RS10010 PF13393 Histidyl-tRNA synthetase RR41_RS10015 PF00709 Adenylosuccinate synthetase RR41_RS10030 PF00248 Aldo/keto reductase family RR41_RS10035 PF13545 Crp-like helix-turn-helix domain RR41_RS10035 PF00027 Cyclic nucleotide-binding domain RR41_RS10040 PF02566 OsmC-like protein RR41_RS10045 PF00872 Transposase, Mutator family RR41_RS10060 PF10431 C-terminal, D2-small domain, of ClpB protein RR41_RS10060 PF02861 Clp amino terminal domain, pathogenicity island component RR41_RS10060 PF00004 ATPase family associated with various cellular activities (AAA) RR41_RS10060 PF07724 AAA domain (Cdc48 subfamily) RR41_RS10060 PF17871 AAA lid domain RR41_RS10075 PF01170 Putative RNA methylase family UPF0020 RR41_RS10075 PF10672 S-adenosylmethionine-dependent methyltransferase RR41_RS10075 PF02926 THUMP domain RR41_RS10085 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RR41_RS10085 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RR41_RS10090 PF01979 Amidohydrolase family RR41_RS10095 PF00691 OmpA family RR41_RS10095 PF13488 Glycine zipper RR41_RS10105 PF13417 Glutathione S-transferase, N-terminal domain RR41_RS10105 PF00043 Glutathione S-transferase, C-terminal domain RR41_RS10110 PF13936 Helix-turn-helix domain RR41_RS10110 PF00665 Integrase core domain RR41_RS10130 PF02390 Putative methyltransferase RR41_RS10140 PF00043 Glutathione S-transferase, C-terminal domain RR41_RS10140 PF02798 Glutathione S-transferase, N-terminal domain RR41_RS10150 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS10150 PF13192 Thioredoxin domain RR41_RS10170 PF10417 C-terminal domain of 1-Cys peroxiredoxin RR41_RS10170 PF00578 AhpC/TSA family RR41_RS10175 PF00270 DEAD/DEAH box helicase RR41_RS10175 PF11898 Domain of unknown function (DUF3418) RR41_RS10175 PF04408 Helicase associated domain (HA2) RR41_RS10175 PF00271 Helicase conserved C-terminal domain RR41_RS10175 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RR41_RS10180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RR41_RS10180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RR41_RS10190 PF07690 Major Facilitator Superfamily RR41_RS10195 PF03594 Benzoate membrane transport protein RR41_RS10200 PF00106 short chain dehydrogenase RR41_RS10205 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS10205 PF00970 Oxidoreductase FAD-binding domain RR41_RS10205 PF00175 Oxidoreductase NAD-binding domain RR41_RS10210 PF00866 Ring hydroxylating beta subunit RR41_RS10215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS10215 PF03466 LysR substrate binding domain RR41_RS10225 PF00403 Heavy-metal-associated domain RR41_RS10230 PF00376 MerR family regulatory protein RR41_RS10230 PF09278 MerR, DNA binding RR41_RS10265 PF02601 Exonuclease VII, large subunit RR41_RS10265 PF13742 OB-fold nucleic acid binding domain RR41_RS10295 PF01810 LysE type translocator RR41_RS10300 PF00665 Integrase core domain RR41_RS10300 PF13936 Helix-turn-helix domain RR41_RS10305 PF00313 'Cold-shock' DNA-binding domain RR41_RS10315 PF03807 NADP oxidoreductase coenzyme F420-dependent RR41_RS10315 PF14748 Pyrroline-5-carboxylate reductase dimerisation RR41_RS10335 PF07690 Major Facilitator Superfamily RR41_RS10340 PF01638 HxlR-like helix-turn-helix RR41_RS10360 PF13737 Transposase DDE domain RR41_RS10380 PF09190 DALR domain RR41_RS10380 PF01406 tRNA synthetases class I (C) catalytic domain RR41_RS10385 PF01380 SIS domain RR41_RS10385 PF00571 CBS domain RR41_RS10400 PF03968 OstA-like protein RR41_RS10405 PF00005 ABC transporter RR41_RS10405 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR41_RS10415 PF03412 Peptidase C39 family RR41_RS10415 PF00005 ABC transporter RR41_RS10415 PF00664 ABC transporter transmembrane region RR41_RS10425 PF01205 Uncharacterized protein family UPF0029 RR41_RS10430 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS10440 PF01596 O-methyltransferase RR41_RS10450 PF00037 4Fe-4S binding domain RR41_RS10450 PF11953 Domain of unknown function (DUF3470) RR41_RS10460 PF01624 MutS domain I RR41_RS10460 PF05188 MutS domain II RR41_RS10460 PF05192 MutS domain III RR41_RS10460 PF00488 MutS domain V RR41_RS10460 PF05190 MutS family domain IV RR41_RS10465 PF01037 Lrp/AsnC ligand binding domain RR41_RS10470 PF00892 EamA-like transporter family RR41_RS10475 PF00563 EAL domain RR41_RS10475 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS10475 PF03707 Bacterial signalling protein N terminal repeat RR41_RS10480 PF03279 Bacterial lipid A biosynthesis acyltransferase RR41_RS10490 PF07690 Major Facilitator Superfamily RR41_RS10510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR41_RS10510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR41_RS10535 PF03466 LysR substrate binding domain RR41_RS10535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS10540 PF01566 Natural resistance-associated macrophage protein RR41_RS10545 PF03746 LamB/YcsF family RR41_RS10550 PF07286 Protein of unknown function (DUF1445) RR41_RS10560 PF02785 Biotin carboxylase C-terminal domain RR41_RS10560 PF00289 Biotin carboxylase, N-terminal domain RR41_RS10560 PF00364 Biotin-requiring enzyme RR41_RS10560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR41_RS10565 PF00654 Voltage gated chloride channel RR41_RS10580 PF00872 Transposase, Mutator family RR41_RS10585 PF00440 Bacterial regulatory proteins, tetR family RR41_RS10595 PF13823 Alcohol dehydrogenase GroES-associated RR41_RS10595 PF00107 Zinc-binding dehydrogenase RR41_RS10595 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS10610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR41_RS10610 PF02785 Biotin carboxylase C-terminal domain RR41_RS10610 PF00289 Biotin carboxylase, N-terminal domain RR41_RS10615 PF02525 Flavodoxin-like fold RR41_RS10620 PF01638 HxlR-like helix-turn-helix RR41_RS10635 PF01402 Ribbon-helix-helix protein, copG family RR41_RS10635 PF08753 NikR C terminal nickel binding domain RR41_RS10640 PF01425 Amidase RR41_RS10645 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR41_RS10650 PF00005 ABC transporter RR41_RS10665 PF13296 Putative type VI secretion system Rhs element Vgr RR41_RS10665 PF04717 Type VI secretion system, phage-baseplate injector RR41_RS10665 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RR41_RS10705 PF06812 ImpA, N-terminal, type VI secretion system RR41_RS10710 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE RR41_RS10730 PF03466 LysR substrate binding domain RR41_RS10730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS10740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RR41_RS10745 PF07690 Major Facilitator Superfamily RR41_RS10760 PF02677 Epoxyqueuosine reductase QueH RR41_RS10770 PF09278 MerR, DNA binding RR41_RS10770 PF00376 MerR family regulatory protein RR41_RS10785 PF00701 Dihydrodipicolinate synthetase family RR41_RS10795 PF00392 Bacterial regulatory proteins, gntR family RR41_RS10800 PF05544 Proline racemase RR41_RS10805 PF01266 FAD dependent oxidoreductase RR41_RS10805 PF01266 FAD dependent oxidoreductase RR41_RS10815 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS10815 PF04324 BFD-like [2Fe-2S] binding domain RR41_RS10825 PF00083 Sugar (and other) transporter RR41_RS10830 PF00171 Aldehyde dehydrogenase family RR41_RS10835 PF13520 Amino acid permease RR41_RS10840 PF03315 Serine dehydratase beta chain RR41_RS10840 PF03313 Serine dehydratase alpha chain RR41_RS10845 PF00171 Aldehyde dehydrogenase family RR41_RS10845 PF01575 MaoC like domain RR41_RS10850 PF05138 Phenylacetic acid catabolic protein RR41_RS10855 PF06243 Phenylacetic acid degradation B RR41_RS10860 PF05138 Phenylacetic acid catabolic protein RR41_RS10865 PF01883 Iron-sulfur cluster assembly protein RR41_RS10870 PF00175 Oxidoreductase NAD-binding domain RR41_RS10870 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS10870 PF00970 Oxidoreductase FAD-binding domain RR41_RS10875 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS10880 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS10885 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RR41_RS10885 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR41_RS10885 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR41_RS10890 PF00108 Thiolase, N-terminal domain RR41_RS10890 PF02803 Thiolase, C-terminal domain RR41_RS10895 PF14535 AMP-binding enzyme C-terminal domain RR41_RS10895 PF00501 AMP-binding enzyme RR41_RS10900 PF07848 PaaX-like protein RR41_RS10900 PF08223 PaaX-like protein C-terminal domain RR41_RS10905 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS10910 PF03061 Thioesterase superfamily RR41_RS10925 PF00199 Catalase RR41_RS10930 PF01292 Prokaryotic cytochrome b561 RR41_RS10935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS10935 PF03466 LysR substrate binding domain RR41_RS10940 PF02525 Flavodoxin-like fold RR41_RS10945 PF01614 Bacterial transcriptional regulator RR41_RS10945 PF09339 IclR helix-turn-helix domain RR41_RS10950 PF01494 FAD binding domain RR41_RS10955 PF00842 Alanine racemase, C-terminal domain RR41_RS10955 PF01168 Alanine racemase, N-terminal domain RR41_RS10960 PF07702 UTRA domain RR41_RS10960 PF00392 Bacterial regulatory proteins, gntR family RR41_RS10970 PF00005 ABC transporter RR41_RS10970 PF08402 TOBE domain RR41_RS10975 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS10980 PF01266 FAD dependent oxidoreductase RR41_RS10985 PF00266 Aminotransferase class-V RR41_RS10990 PF13419 Haloacid dehalogenase-like hydrolase RR41_RS10995 PF07690 Major Facilitator Superfamily RR41_RS11000 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS11000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS11000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS11005 PF02515 CoA-transferase family III RR41_RS11010 PF09339 IclR helix-turn-helix domain RR41_RS11015 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS11020 PF03060 Nitronate monooxygenase RR41_RS11025 PF07690 Major Facilitator Superfamily RR41_RS11030 PF09339 IclR helix-turn-helix domain RR41_RS11035 PF00108 Thiolase, N-terminal domain RR41_RS11035 PF02803 Thiolase, C-terminal domain RR41_RS11040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR41_RS11040 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RR41_RS11040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR41_RS11050 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS11055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS11055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS11055 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS11060 PF07690 Major Facilitator Superfamily RR41_RS11065 PF01144 Coenzyme A transferase RR41_RS11070 PF01144 Coenzyme A transferase RR41_RS11080 PF07690 Major Facilitator Superfamily RR41_RS11090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS11090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS11090 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS11090 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR41_RS11105 PF03466 LysR substrate binding domain RR41_RS11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11110 PF00682 HMGL-like RR41_RS11115 PF00289 Biotin carboxylase, N-terminal domain RR41_RS11115 PF00364 Biotin-requiring enzyme RR41_RS11115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR41_RS11115 PF18140 Propionyl-coenzyme A carboxylase BT domain RR41_RS11115 PF02785 Biotin carboxylase C-terminal domain RR41_RS11120 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS11125 PF01039 Carboxyl transferase domain RR41_RS11130 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS11130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS11130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS11135 PF00440 Bacterial regulatory proteins, tetR family RR41_RS11140 PF13193 AMP-binding enzyme C-terminal domain RR41_RS11140 PF00501 AMP-binding enzyme RR41_RS11160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11160 PF03466 LysR substrate binding domain RR41_RS11195 PF00665 Integrase core domain RR41_RS11195 PF13936 Helix-turn-helix domain RR41_RS11200 PF02464 Competence-damaged protein RR41_RS11200 PF18146 Damage-inducible protein CinA KH domain RR41_RS11200 PF00994 Probable molybdopterin binding domain RR41_RS11210 PF06628 Catalase-related immune-responsive RR41_RS11210 PF18011 C-terminal domain found in long catalases RR41_RS11210 PF00199 Catalase RR41_RS11235 PF00717 Peptidase S24-like RR41_RS11245 PF01037 Lrp/AsnC ligand binding domain RR41_RS11245 PF13404 AsnC-type helix-turn-helix domain RR41_RS11255 PF00072 Response regulator receiver domain RR41_RS11255 PF09308 LuxQ, periplasmic RR41_RS11255 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS11270 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS11275 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS11280 PF00005 ABC transporter RR41_RS11285 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR41_RS11290 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR41_RS11295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11295 PF03466 LysR substrate binding domain RR41_RS11300 PF01810 LysE type translocator RR41_RS11305 PF00266 Aminotransferase class-V RR41_RS11315 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS11320 PF00581 Rhodanese-like domain RR41_RS11330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11330 PF03466 LysR substrate binding domain RR41_RS11335 PF02798 Glutathione S-transferase, N-terminal domain RR41_RS11340 PF14834 Glutathione S-transferase, C-terminal domain RR41_RS11340 PF02798 Glutathione S-transferase, N-terminal domain RR41_RS11345 PF03466 LysR substrate binding domain RR41_RS11345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11350 PF03788 LrgA family RR41_RS11355 PF04172 LrgB-like family RR41_RS11360 PF00392 Bacterial regulatory proteins, gntR family RR41_RS11380 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RR41_RS11385 PF06857 Malonate decarboxylase delta subunit (MdcD) RR41_RS11390 PF01039 Carboxyl transferase domain RR41_RS11400 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG RR41_RS11405 PF00698 Acyl transferase domain RR41_RS11420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11420 PF03466 LysR substrate binding domain RR41_RS11425 PF00155 Aminotransferase class I and II RR41_RS11425 PF00392 Bacterial regulatory proteins, gntR family RR41_RS11445 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS11445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS11445 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS11450 PF00296 Luciferase-like monooxygenase RR41_RS11455 PF00083 Sugar (and other) transporter RR41_RS11465 PF03960 ArsC family RR41_RS11470 PF01022 Bacterial regulatory protein, arsR family RR41_RS11475 PF01758 Sodium Bile acid symporter family RR41_RS11480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11480 PF03466 LysR substrate binding domain RR41_RS11495 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS11495 PF13192 Thioredoxin domain RR41_RS11510 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS11515 PF00588 SpoU rRNA Methylase family RR41_RS11520 PF01336 OB-fold nucleic acid binding domain RR41_RS11520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RR41_RS11520 PF14579 Helix-hairpin-helix motif RR41_RS11520 PF02811 PHP domain RR41_RS11520 PF07733 Bacterial DNA polymerase III alpha NTPase domain RR41_RS11525 PF00710 Asparaginase, N-terminal RR41_RS11525 PF17763 Glutaminase/Asparaginase C-terminal domain RR41_RS11530 PF00375 Sodium:dicarboxylate symporter family RR41_RS11535 PF00155 Aminotransferase class I and II RR41_RS11540 PF01641 SelR domain RR41_RS11545 PF00255 Glutathione peroxidase RR41_RS11550 PF12833 Helix-turn-helix domain RR41_RS11550 PF12852 Cupin RR41_RS11560 PF00155 Aminotransferase class I and II RR41_RS11565 PF08335 GlnD PII-uridylyltransferase RR41_RS11565 PF01966 HD domain RR41_RS11565 PF01909 Nucleotidyltransferase domain RR41_RS11570 PF02222 ATP-grasp domain RR41_RS11580 PF05437 Branched-chain amino acid transport protein (AzlD) RR41_RS11585 PF03591 AzlC protein RR41_RS11610 PF06071 Protein of unknown function (DUF933) RR41_RS11610 PF01926 50S ribosome-binding GTPase RR41_RS11615 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS11620 PF09383 NIL domain RR41_RS11620 PF00005 ABC transporter RR41_RS11625 PF03180 NLPA lipoprotein RR41_RS11630 PF03180 NLPA lipoprotein RR41_RS11635 PF00296 Luciferase-like monooxygenase RR41_RS11645 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS11645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS11660 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS11665 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS11670 PF00005 ABC transporter RR41_RS11690 PF13007 Transposase C of IS166 homeodomain RR41_RS11690 PF03050 Transposase IS66 family RR41_RS11690 PF13817 IS66 C-terminal element RR41_RS11690 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS11695 PF01037 Lrp/AsnC ligand binding domain RR41_RS11700 PF01709 Transcriptional regulator RR41_RS11710 PF00440 Bacterial regulatory proteins, tetR family RR41_RS11730 PF03466 LysR substrate binding domain RR41_RS11730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS11740 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RR41_RS11750 PF00892 EamA-like transporter family RR41_RS11780 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RR41_RS11780 PF02753 Pili assembly chaperone PapD, C-terminal domain RR41_RS11785 PF16970 Type-1 fimbrial protein, A RR41_RS11800 PF06968 Biotin and Thiamin Synthesis associated domain RR41_RS11800 PF04055 Radical SAM superfamily RR41_RS11805 PF08331 Domain of unknown function (DUF1730) RR41_RS11810 PF03853 YjeF-related protein N-terminus RR41_RS11810 PF01256 Carbohydrate kinase RR41_RS11815 PF02075 Crossover junction endodeoxyribonuclease RuvC RR41_RS11830 PF00905 Penicillin binding protein transpeptidase domain RR41_RS11865 PF02772 S-adenosylmethionine synthetase, central domain RR41_RS11865 PF00438 S-adenosylmethionine synthetase, N-terminal domain RR41_RS11865 PF02773 S-adenosylmethionine synthetase, C-terminal domain RR41_RS11870 PF02779 Transketolase, pyrimidine binding domain RR41_RS11870 PF00456 Transketolase, thiamine diphosphate binding domain RR41_RS11870 PF02780 Transketolase, C-terminal domain RR41_RS11880 PF04264 YceI-like domain RR41_RS11890 PF09992 Phosphodiester glycosidase RR41_RS11900 PF05958 tRNA (Uracil-5-)-methyltransferase RR41_RS11905 PF04229 GrpB protein RR41_RS11910 PF14850 DNA-binding domain of Proline dehydrogenase RR41_RS11910 PF01619 Proline dehydrogenase RR41_RS11910 PF00171 Aldehyde dehydrogenase family RR41_RS11910 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RR41_RS11915 PF01037 Lrp/AsnC ligand binding domain RR41_RS11920 PF00474 Sodium:solute symporter family RR41_RS11925 PF02146 Sir2 family RR41_RS11930 PF01597 Glycine cleavage H-protein RR41_RS11935 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RR41_RS11935 PF12833 Helix-turn-helix domain RR41_RS11945 PF00664 ABC transporter transmembrane region RR41_RS11945 PF00005 ABC transporter RR41_RS11950 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) RR41_RS11955 PF06912 Protein of unknown function (DUF1275) RR41_RS11960 PF00375 Sodium:dicarboxylate symporter family RR41_RS11975 PF08007 Cupin superfamily protein RR41_RS11980 PF02545 Maf-like protein RR41_RS11990 PF00162 Phosphoglycerate kinase RR41_RS12000 PF01116 Fructose-bisphosphate aldolase class-II RR41_RS12005 PF00639 PPIC-type PPIASE domain RR41_RS12005 PF09312 SurA N-terminal domain RR41_RS12010 PF03968 OstA-like protein RR41_RS12010 PF04453 LPS transport system D RR41_RS12015 PF01636 Phosphotransferase enzyme family RR41_RS12020 PF00483 Nucleotidyl transferase RR41_RS12025 PF02527 rRNA small subunit methyltransferase G RR41_RS12030 PF13614 AAA domain RR41_RS12035 PF02195 ParB-like nuclease domain RR41_RS12035 PF17762 HTH domain found in ParB protein RR41_RS12040 PF01618 MotA/TolQ/ExbB proton channel family RR41_RS12050 PF00005 ABC transporter RR41_RS12050 PF00664 ABC transporter transmembrane region RR41_RS12055 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RR41_RS12060 PF02348 Cytidylyltransferase RR41_RS12065 PF09115 DNA polymerase III, delta subunit, C terminal RR41_RS12075 PF01026 TatD related DNase RR41_RS12090 PF07963 Prokaryotic N-terminal methylation motif RR41_RS12090 PF02501 Type II secretion system (T2SS), protein I RR41_RS12095 PF11612 Type II secretion system (T2SS), protein J RR41_RS12095 PF07963 Prokaryotic N-terminal methylation motif RR41_RS12100 PF03934 Type II secretion system (T2SS), protein K RR41_RS12110 PF03167 Uracil DNA glycosylase superfamily RR41_RS12120 PF14437 MafB19-like deaminase RR41_RS12130 PF02224 Cytidylate kinase RR41_RS12135 PF00575 S1 RNA binding domain RR41_RS12140 PF00216 Bacterial DNA-binding protein RR41_RS12150 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RR41_RS12160 PF00743 Flavin-binding monooxygenase-like RR41_RS12165 PF00665 Integrase core domain RR41_RS12165 PF13936 Helix-turn-helix domain RR41_RS12170 PF00743 Flavin-binding monooxygenase-like RR41_RS12180 PF03969 AFG1-like ATPase RR41_RS12185 PF01274 Malate synthase RR41_RS12195 PF02472 Biopolymer transport protein ExbD/TolR RR41_RS12200 PF02472 Biopolymer transport protein ExbD/TolR RR41_RS12205 PF01618 MotA/TolQ/ExbB proton channel family RR41_RS12215 PF00593 TonB dependent receptor RR41_RS12215 PF07715 TonB-dependent Receptor Plug Domain RR41_RS12225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR41_RS12230 PF01432 Peptidase family M3 RR41_RS12235 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS12240 PF12911 N-terminal TM domain of oligopeptide transport permease C RR41_RS12240 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS12245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR41_RS12245 PF00005 ABC transporter RR41_RS12260 PF00459 Inositol monophosphatase family RR41_RS12270 PF01649 Ribosomal protein S20 RR41_RS12275 PF13460 NAD(P)H-binding RR41_RS12280 PF03737 Aldolase/RraA RR41_RS12300 PF00872 Transposase, Mutator family RR41_RS12305 PF00270 DEAD/DEAH box helicase RR41_RS12305 PF02559 CarD-like/TRCF domain RR41_RS12305 PF03461 TRCF domain RR41_RS12305 PF00271 Helicase conserved C-terminal domain RR41_RS12305 PF17757 UvrB interaction domain RR41_RS12315 PF00211 Adenylate and Guanylate cyclase catalytic domain RR41_RS12320 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS12325 PF00012 Hsp70 protein RR41_RS12330 PF00226 DnaJ domain RR41_RS12330 PF07743 HSCB C-terminal oligomerisation domain RR41_RS12335 PF01521 Iron-sulphur cluster biosynthesis RR41_RS12340 PF01592 NifU-like N terminal domain RR41_RS12345 PF00266 Aminotransferase class-V RR41_RS12350 PF02082 Transcriptional regulator RR41_RS12365 PF00216 Bacterial DNA-binding protein RR41_RS12370 PF00639 PPIC-type PPIASE domain RR41_RS12370 PF09312 SurA N-terminal domain RR41_RS12375 PF12833 Helix-turn-helix domain RR41_RS12375 PF12852 Cupin RR41_RS12380 PF00487 Fatty acid desaturase RR41_RS12385 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS12385 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS12385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS12390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS12390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS12390 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS12395 PF03109 ABC1 family RR41_RS12405 PF04073 Aminoacyl-tRNA editing domain RR41_RS12410 PF04183 IucA / IucC family RR41_RS12410 PF06276 Ferric iron reductase FhuF-like transporter RR41_RS12415 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RR41_RS12420 PF07690 Major Facilitator Superfamily RR41_RS12425 PF04183 IucA / IucC family RR41_RS12425 PF06276 Ferric iron reductase FhuF-like transporter RR41_RS12430 PF04183 IucA / IucC family RR41_RS12430 PF06276 Ferric iron reductase FhuF-like transporter RR41_RS12440 PF03737 Aldolase/RraA RR41_RS12445 PF00593 TonB dependent receptor RR41_RS12445 PF07715 TonB-dependent Receptor Plug Domain RR41_RS12470 PF13419 Haloacid dehalogenase-like hydrolase RR41_RS12480 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RR41_RS12485 PF02277 Phosphoribosyltransferase RR41_RS12490 PF00300 Histidine phosphatase superfamily (branch 1) RR41_RS12500 PF02654 Cobalamin-5-phosphate synthase RR41_RS12505 PF00793 DAHP synthetase I family RR41_RS12510 PF01925 Sulfite exporter TauE/SafE RR41_RS12530 PF00593 TonB dependent receptor RR41_RS12530 PF07715 TonB-dependent Receptor Plug Domain RR41_RS12535 PF02684 Lipid-A-disaccharide synthetase RR41_RS12545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS12550 PF00005 ABC transporter RR41_RS12585 PF01230 HIT domain RR41_RS12595 PF13737 Transposase DDE domain RR41_RS12620 PF08241 Methyltransferase domain RR41_RS12625 PF00561 alpha/beta hydrolase fold RR41_RS12630 PF01053 Cys/Met metabolism PLP-dependent enzyme RR41_RS12645 PF13817 IS66 C-terminal element RR41_RS12645 PF03050 Transposase IS66 family RR41_RS12645 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS12645 PF13007 Transposase C of IS166 homeodomain RR41_RS12655 PF02575 YbaB/EbfC DNA-binding family RR41_RS12660 PF02132 RecR protein RR41_RS12660 PF13662 Toprim domain RR41_RS12665 PF00570 HRDC domain RR41_RS12665 PF01612 3'-5' exonuclease RR41_RS12685 PF05166 YcgL domain RR41_RS12695 PF00004 ATPase family associated with various cellular activities (AAA) RR41_RS12695 PF01434 Peptidase family M41 RR41_RS12695 PF17862 AAA+ lid domain RR41_RS12705 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS12710 PF05175 Methyltransferase small domain RR41_RS12715 PF01264 Chorismate synthase RR41_RS12720 PF08448 PAS fold RR41_RS12720 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS12735 PF04055 Radical SAM superfamily RR41_RS12740 PF00676 Dehydrogenase E1 component RR41_RS12745 PF02779 Transketolase, pyrimidine binding domain RR41_RS12745 PF02780 Transketolase, C-terminal domain RR41_RS12750 PF00364 Biotin-requiring enzyme RR41_RS12750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RR41_RS12750 PF02817 e3 binding domain RR41_RS12755 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS12755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR41_RS12760 PF00106 short chain dehydrogenase RR41_RS12765 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS12765 PF00107 Zinc-binding dehydrogenase RR41_RS12770 PF01062 Bestrophin, RFP-TM, chloride channel RR41_RS12775 PF00072 Response regulator receiver domain RR41_RS12775 PF02954 Bacterial regulatory protein, Fis family RR41_RS12775 PF00158 Sigma-54 interaction domain RR41_RS12780 PF00753 Metallo-beta-lactamase superfamily RR41_RS12780 PF04273 Putative phosphatase (DUF442) RR41_RS12785 PF00753 Metallo-beta-lactamase superfamily RR41_RS12785 PF04273 Putative phosphatase (DUF442) RR41_RS12790 PF01925 Sulfite exporter TauE/SafE RR41_RS12805 PF12833 Helix-turn-helix domain RR41_RS12805 PF06445 GyrI-like small molecule binding domain RR41_RS12815 PF02525 Flavodoxin-like fold RR41_RS12825 PF07702 UTRA domain RR41_RS12825 PF00392 Bacterial regulatory proteins, gntR family RR41_RS12840 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RR41_RS12845 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS12850 PF00005 ABC transporter RR41_RS12865 PF00083 Sugar (and other) transporter RR41_RS12870 PF07715 TonB-dependent Receptor Plug Domain RR41_RS12870 PF00593 TonB dependent receptor RR41_RS12875 PF10415 Fumarase C C-terminus RR41_RS12875 PF00206 Lyase RR41_RS12890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS12890 PF03466 LysR substrate binding domain RR41_RS12895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS12895 PF03466 LysR substrate binding domain RR41_RS12900 PF02803 Thiolase, C-terminal domain RR41_RS12900 PF00108 Thiolase, N-terminal domain RR41_RS12905 PF02667 Short chain fatty acid transporter RR41_RS12910 PF01144 Coenzyme A transferase RR41_RS12915 PF01144 Coenzyme A transferase RR41_RS12920 PF03466 LysR substrate binding domain RR41_RS12920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS12940 PF12833 Helix-turn-helix domain RR41_RS12940 PF06719 AraC-type transcriptional regulator N-terminus RR41_RS12945 PF07690 Major Facilitator Superfamily RR41_RS12950 PF00872 Transposase, Mutator family RR41_RS12955 PF01738 Dienelactone hydrolase family RR41_RS12970 PF01613 Flavin reductase like domain RR41_RS12980 PF14525 AraC-binding-like domain RR41_RS12980 PF12833 Helix-turn-helix domain RR41_RS12985 PF00175 Oxidoreductase NAD-binding domain RR41_RS12985 PF00970 Oxidoreductase FAD-binding domain RR41_RS12985 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS12990 PF00866 Ring hydroxylating beta subunit RR41_RS12995 PF00355 Rieske [2Fe-2S] domain RR41_RS12995 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RR41_RS13000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS13000 PF03459 TOBE domain RR41_RS13010 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS13015 PF03459 TOBE domain RR41_RS13015 PF00005 ABC transporter RR41_RS13020 PF00106 short chain dehydrogenase RR41_RS13025 PF00857 Isochorismatase family RR41_RS13025 PF00550 Phosphopantetheine attachment site RR41_RS13035 PF00149 Calcineurin-like phosphoesterase RR41_RS13040 PF13089 Polyphosphate kinase N-terminal domain RR41_RS13040 PF13090 Polyphosphate kinase C-terminal domain 2 RR41_RS13040 PF02503 Polyphosphate kinase middle domain RR41_RS13040 PF17941 Polyphosphate kinase C-terminal domain 1 RR41_RS13045 PF12706 Beta-lactamase superfamily domain RR41_RS13050 PF03070 TENA/THI-4/PQQC family RR41_RS13055 PF05402 Coenzyme PQQ synthesis protein D (PqqD) RR41_RS13060 PF04055 Radical SAM superfamily RR41_RS13060 PF13186 Iron-sulfur cluster-binding domain RR41_RS13065 PF01244 Membrane dipeptidase (Peptidase family M19) RR41_RS13085 PF13091 PLD-like domain RR41_RS13090 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS13090 PF03050 Transposase IS66 family RR41_RS13090 PF13007 Transposase C of IS166 homeodomain RR41_RS13090 PF13817 IS66 C-terminal element RR41_RS13105 PF13091 PLD-like domain RR41_RS13115 PF13936 Helix-turn-helix domain RR41_RS13115 PF00665 Integrase core domain RR41_RS13125 PF00199 Catalase RR41_RS13135 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS13135 PF00107 Zinc-binding dehydrogenase RR41_RS13150 PF00577 Outer membrane usher protein RR41_RS13150 PF13954 PapC N-terminal domain RR41_RS13150 PF13953 PapC C-terminal domain RR41_RS13155 PF02753 Pili assembly chaperone PapD, C-terminal domain RR41_RS13155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RR41_RS13160 PF16970 Type-1 fimbrial protein, A RR41_RS13200 PF01266 FAD dependent oxidoreductase RR41_RS13210 PF00743 Flavin-binding monooxygenase-like RR41_RS13220 PF12146 Serine aminopeptidase, S33 RR41_RS13225 PF02321 Outer membrane efflux protein RR41_RS13230 PF00873 AcrB/AcrD/AcrF family RR41_RS13235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS13235 PF00529 HlyD membrane-fusion protein of T1SS RR41_RS13240 PF13673 Acetyltransferase (GNAT) domain RR41_RS13270 PF13291 ACT domain RR41_RS13270 PF04607 Region found in RelA / SpoT proteins RR41_RS13270 PF02824 TGS domain RR41_RS13280 PF01975 Survival protein SurE RR41_RS13305 PF07690 Major Facilitator Superfamily RR41_RS13325 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RR41_RS13330 PF14572 Phosphoribosyl synthetase-associated domain RR41_RS13330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RR41_RS13350 PF00005 ABC transporter RR41_RS13355 PF01032 FecCD transport family RR41_RS13365 PF00171 Aldehyde dehydrogenase family RR41_RS13380 PF00529 HlyD membrane-fusion protein of T1SS RR41_RS13380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS13395 PF07702 UTRA domain RR41_RS13395 PF00392 Bacterial regulatory proteins, gntR family RR41_RS13405 PF04909 Amidohydrolase RR41_RS13410 PF07690 Major Facilitator Superfamily RR41_RS13415 PF13737 Transposase DDE domain RR41_RS13430 PF13737 Transposase DDE domain RR41_RS13450 PF00501 AMP-binding enzyme RR41_RS13450 PF13193 AMP-binding enzyme C-terminal domain RR41_RS13460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS13460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS13460 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS13460 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR41_RS13465 PF01575 MaoC like domain RR41_RS13470 PF00106 short chain dehydrogenase RR41_RS13485 PF03466 LysR substrate binding domain RR41_RS13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS13490 PF08359 YsiA-like protein, C-terminal region RR41_RS13490 PF00440 Bacterial regulatory proteins, tetR family RR41_RS13495 PF12706 Beta-lactamase superfamily domain RR41_RS13505 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS13515 PF09278 MerR, DNA binding RR41_RS13515 PF00376 MerR family regulatory protein RR41_RS13525 PF00106 short chain dehydrogenase RR41_RS13530 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS13530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR41_RS13535 PF00561 alpha/beta hydrolase fold RR41_RS13545 PF00171 Aldehyde dehydrogenase family RR41_RS13555 PF07690 Major Facilitator Superfamily RR41_RS13560 PF00920 Dehydratase family RR41_RS13565 PF07729 FCD domain RR41_RS13565 PF00392 Bacterial regulatory proteins, gntR family RR41_RS13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS13575 PF03466 LysR substrate binding domain RR41_RS13580 PF13378 Enolase C-terminal domain-like RR41_RS13580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RR41_RS13585 PF02426 Muconolactone delta-isomerase RR41_RS13590 PF00775 Dioxygenase RR41_RS13590 PF04444 Catechol dioxygenase N terminus RR41_RS13595 PF01144 Coenzyme A transferase RR41_RS13600 PF01144 Coenzyme A transferase RR41_RS13605 PF02803 Thiolase, C-terminal domain RR41_RS13605 PF00108 Thiolase, N-terminal domain RR41_RS13610 PF12146 Serine aminopeptidase, S33 RR41_RS13615 PF01804 Penicillin amidase RR41_RS13620 PF00171 Aldehyde dehydrogenase family RR41_RS13630 PF02728 Copper amine oxidase, N3 domain RR41_RS13630 PF02727 Copper amine oxidase, N2 domain RR41_RS13630 PF07833 Copper amine oxidase N-terminal domain RR41_RS13630 PF01179 Copper amine oxidase, enzyme domain RR41_RS13635 PF12833 Helix-turn-helix domain RR41_RS13635 PF02311 AraC-like ligand binding domain RR41_RS13640 PF01613 Flavin reductase like domain RR41_RS13645 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS13645 PF00175 Oxidoreductase NAD-binding domain RR41_RS13660 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RR41_RS13660 PF00355 Rieske [2Fe-2S] domain RR41_RS13675 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS13680 PF01425 Amidase RR41_RS13690 PF07690 Major Facilitator Superfamily RR41_RS13700 PF00106 short chain dehydrogenase RR41_RS13715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS13715 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS13715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS13720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS13720 PF03466 LysR substrate binding domain RR41_RS13725 PF01614 Bacterial transcriptional regulator RR41_RS13725 PF09339 IclR helix-turn-helix domain RR41_RS13730 PF00753 Metallo-beta-lactamase superfamily RR41_RS13740 PF04143 Sulphur transport RR41_RS13750 PF01011 PQQ enzyme repeat RR41_RS13750 PF13360 PQQ-like domain RR41_RS13755 PF04966 Carbohydrate-selective porin, OprB family RR41_RS13760 PF05048 Periplasmic copper-binding protein (NosD) RR41_RS13765 PF01487 Type I 3-dehydroquinase RR41_RS13770 PF00775 Dioxygenase RR41_RS13775 PF00775 Dioxygenase RR41_RS13775 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RR41_RS13780 PF02627 Carboxymuconolactone decarboxylase family RR41_RS13785 PF07690 Major Facilitator Superfamily RR41_RS13790 PF00561 alpha/beta hydrolase fold RR41_RS13795 PF00206 Lyase RR41_RS13795 PF10397 Adenylosuccinate lyase C-terminus RR41_RS13800 PF00108 Thiolase, N-terminal domain RR41_RS13800 PF02803 Thiolase, C-terminal domain RR41_RS13805 PF01144 Coenzyme A transferase RR41_RS13810 PF01144 Coenzyme A transferase RR41_RS13815 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RR41_RS13820 PF04977 Septum formation initiator RR41_RS13825 PF04239 Protein of unknown function (DUF421) RR41_RS13830 PF00113 Enolase, C-terminal TIM barrel domain RR41_RS13830 PF03952 Enolase, N-terminal domain RR41_RS13835 PF00793 DAHP synthetase I family RR41_RS13840 PF06418 CTP synthase N-terminus RR41_RS13840 PF00117 Glutamine amidotransferase class-I RR41_RS13870 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS13870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR41_RS13885 PF00793 DAHP synthetase I family RR41_RS13890 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RR41_RS13895 PF00004 ATPase family associated with various cellular activities (AAA) RR41_RS13895 PF07724 AAA domain (Cdc48 subfamily) RR41_RS13895 PF10431 C-terminal, D2-small domain, of ClpB protein RR41_RS13895 PF02861 Clp amino terminal domain, pathogenicity island component RR41_RS13895 PF17871 AAA lid domain RR41_RS13900 PF02617 ATP-dependent Clp protease adaptor protein ClpS RR41_RS13910 PF02774 Semialdehyde dehydrogenase, dimerisation domain RR41_RS13910 PF01118 Semialdehyde dehydrogenase, NAD binding domain RR41_RS13925 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RR41_RS13930 PF00585 C-terminal regulatory domain of Threonine dehydratase RR41_RS13930 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS13935 PF02254 TrkA-N domain RR41_RS13935 PF02080 TrkA-C domain RR41_RS13940 PF02386 Cation transport protein RR41_RS13945 PF02253 Phospholipase A1 RR41_RS13950 PF00675 Insulinase (Peptidase family M16) RR41_RS13950 PF05193 Peptidase M16 inactive domain RR41_RS13950 PF08367 Peptidase M16C associated RR41_RS13955 PF07715 TonB-dependent Receptor Plug Domain RR41_RS13955 PF00593 TonB dependent receptor RR41_RS13960 PF00294 pfkB family carbohydrate kinase RR41_RS13970 PF07290 Protein of unknown function (DUF1449) RR41_RS13980 PF01654 Cytochrome bd terminal oxidase subunit I RR41_RS13985 PF02322 Cytochrome bd terminal oxidase subunit II RR41_RS13990 PF08173 Membrane bound YbgT-like protein RR41_RS14005 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RR41_RS14015 PF02881 SRP54-type protein, helical bundle domain RR41_RS14015 PF00448 SRP54-type protein, GTPase domain RR41_RS14040 PF00571 CBS domain RR41_RS14040 PF00478 IMP dehydrogenase / GMP reductase domain RR41_RS14045 PF00202 Aminotransferase class-III RR41_RS14050 PF00462 Glutaredoxin RR41_RS14060 PF03466 LysR substrate binding domain RR41_RS14060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS14065 PF00557 Metallopeptidase family M24 RR41_RS14070 PF05525 Branched-chain amino acid transport protein RR41_RS14095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RR41_RS14095 PF00381 PTS HPr component phosphorylation site RR41_RS14095 PF02896 PEP-utilising enzyme, TIM barrel domain RR41_RS14095 PF00391 PEP-utilising enzyme, mobile domain RR41_RS14095 PF05524 PEP-utilising enzyme, N-terminal RR41_RS14100 PF00294 pfkB family carbohydrate kinase RR41_RS14105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RR41_RS14105 PF02378 Phosphotransferase system, EIIC RR41_RS14120 PF03707 Bacterial signalling protein N terminal repeat RR41_RS14120 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS14120 PF00563 EAL domain RR41_RS14130 PF07995 Glucose / Sorbosone dehydrogenase RR41_RS14135 PF02586 SOS response associated peptidase (SRAP) RR41_RS14140 PF01740 STAS domain RR41_RS14140 PF00916 Sulfate permease family RR41_RS14145 PF00082 Subtilase family RR41_RS14145 PF05922 Peptidase inhibitor I9 RR41_RS14155 PF00324 Amino acid permease RR41_RS14160 PF00266 Aminotransferase class-V RR41_RS14165 PF01037 Lrp/AsnC ligand binding domain RR41_RS14190 PF13007 Transposase C of IS166 homeodomain RR41_RS14190 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS14190 PF03050 Transposase IS66 family RR41_RS14190 PF13817 IS66 C-terminal element RR41_RS14205 PF13737 Transposase DDE domain RR41_RS14215 PF00717 Peptidase S24-like RR41_RS14220 PF13438 Domain of unknown function (DUF4113) RR41_RS14220 PF00817 impB/mucB/samB family RR41_RS14220 PF11799 impB/mucB/samB family C-terminal domain RR41_RS14240 PF13737 Transposase DDE domain RR41_RS14260 PF00872 Transposase, Mutator family RR41_RS14330 PF13936 Helix-turn-helix domain RR41_RS14330 PF00665 Integrase core domain RR41_RS14340 PF02767 DNA polymerase III beta subunit, central domain RR41_RS14340 PF02768 DNA polymerase III beta subunit, C-terminal domain RR41_RS14340 PF00712 DNA polymerase III beta subunit, N-terminal domain RR41_RS14365 PF00872 Transposase, Mutator family RR41_RS14510 PF13737 Transposase DDE domain RR41_RS14525 PF13359 DDE superfamily endonuclease RR41_RS14525 PF13613 Helix-turn-helix of DDE superfamily endonuclease RR41_RS14600 PF01695 IstB-like ATP binding protein RR41_RS14610 PF01555 DNA methylase RR41_RS14615 PF00145 C-5 cytosine-specific DNA methylase RR41_RS14650 PF00717 Peptidase S24-like RR41_RS14650 PF01381 Helix-turn-helix RR41_RS14675 PF00929 Exonuclease RR41_RS14740 PF07690 Major Facilitator Superfamily RR41_RS14745 PF13533 Biotin-lipoyl like RR41_RS14750 PF03061 Thioesterase superfamily RR41_RS14755 PF00490 Delta-aminolevulinic acid dehydratase RR41_RS14760 PF01266 FAD dependent oxidoreductase RR41_RS14765 PF01370 NAD dependent epimerase/dehydratase family RR41_RS14765 PF08338 Domain of unknown function (DUF1731) RR41_RS14785 PF00149 Calcineurin-like phosphoesterase RR41_RS14785 PF12320 Type 5 capsule protein repressor C-terminal domain RR41_RS14795 PF01168 Alanine racemase, N-terminal domain RR41_RS14800 PF00437 Type II/IV secretion system protein RR41_RS14805 PF00437 Type II/IV secretion system protein RR41_RS14810 PF01475 Ferric uptake regulator family RR41_RS14815 PF04355 SmpA / OmlA family RR41_RS14820 PF03658 RnfH family Ubiquitin RR41_RS14830 PF01814 Hemerythrin HHE cation binding domain RR41_RS14835 PF13230 Glutamine amidotransferases class-II RR41_RS14845 PF00696 Amino acid kinase family RR41_RS14850 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RR41_RS14850 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RR41_RS14850 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RR41_RS14850 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RR41_RS14855 PF00692 dUTPase RR41_RS14860 PF00580 UvrD/REP helicase N-terminal domain RR41_RS14860 PF13361 UvrD-like helicase C-terminal domain RR41_RS14865 PF13488 Glycine zipper RR41_RS14865 PF00691 OmpA family RR41_RS14870 PF01553 Acyltransferase RR41_RS14880 PF03775 Septum formation inhibitor MinC, C-terminal domain RR41_RS14885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RR41_RS14890 PF03776 Septum formation topological specificity factor MinE RR41_RS14900 PF01810 LysE type translocator RR41_RS14905 PF17854 FtsK alpha domain RR41_RS14905 PF09397 Ftsk gamma domain RR41_RS14905 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RR41_RS14905 PF01580 FtsK/SpoIIIE family RR41_RS14910 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS14915 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RR41_RS14920 PF04377 Arginine-tRNA-protein transferase, C terminus RR41_RS14920 PF04376 Arginine-tRNA-protein transferase, N terminus RR41_RS14925 PF00583 Acetyltransferase (GNAT) family RR41_RS14940 PF03143 Elongation factor Tu C-terminal domain RR41_RS14940 PF03144 Elongation factor Tu domain 2 RR41_RS14940 PF00009 Elongation factor Tu GTP binding domain RR41_RS14945 PF00009 Elongation factor Tu GTP binding domain RR41_RS14945 PF03144 Elongation factor Tu domain 2 RR41_RS14945 PF14492 Elongation Factor G, domain II RR41_RS14945 PF00679 Elongation factor G C-terminus RR41_RS14945 PF03764 Elongation factor G, domain IV RR41_RS14950 PF00177 Ribosomal protein S7p/S5e RR41_RS14955 PF00164 Ribosomal protein S12/S23 RR41_RS14965 PF00109 Beta-ketoacyl synthase, N-terminal domain RR41_RS14965 PF02801 Beta-ketoacyl synthase, C-terminal domain RR41_RS14970 PF03653 Uncharacterised protein family (UPF0093) RR41_RS14975 PF02678 Pirin RR41_RS14975 PF05726 Pirin C-terminal cupin domain RR41_RS14985 PF00795 Carbon-nitrogen hydrolase RR41_RS14985 PF02540 NAD synthase RR41_RS15000 PF00175 Oxidoreductase NAD-binding domain RR41_RS15000 PF00111 2Fe-2S iron-sulfur cluster binding domain RR41_RS15000 PF00970 Oxidoreductase FAD-binding domain RR41_RS15005 PF00171 Aldehyde dehydrogenase family RR41_RS15010 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RR41_RS15010 PF00355 Rieske [2Fe-2S] domain RR41_RS15015 PF07859 alpha/beta hydrolase fold RR41_RS15020 PF02028 BCCT, betaine/carnitine/choline family transporter RR41_RS15025 PF00180 Isocitrate/isopropylmalate dehydrogenase RR41_RS15030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS15030 PF03466 LysR substrate binding domain RR41_RS15045 PF00037 4Fe-4S binding domain RR41_RS15050 PF01467 Cytidylyltransferase-like RR41_RS15055 PF01668 SmpB protein RR41_RS15065 PF02578 Multi-copper polyphenol oxidoreductase laccase RR41_RS15070 PF00849 RNA pseudouridylate synthase RR41_RS15070 PF01479 S4 domain RR41_RS15075 PF13525 Outer membrane lipoprotein RR41_RS15080 PF01807 CHC2 zinc finger RR41_RS15080 PF08278 DNA primase DnaG DnaB-binding RR41_RS15080 PF10410 DnaB-helicase binding domain of primase RR41_RS15080 PF08275 DNA primase catalytic core, N-terminal domain RR41_RS15085 PF01488 Shikimate / quinate 5-dehydrogenase RR41_RS15085 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RR41_RS15085 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RR41_RS15095 PF03550 Outer membrane lipoprotein LolB RR41_RS15100 PF08544 GHMP kinases C terminal RR41_RS15100 PF00288 GHMP kinases N terminal domain RR41_RS15120 PF14572 Phosphoribosyl synthetase-associated domain RR41_RS15120 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RR41_RS15125 PF01386 Ribosomal L25p family RR41_RS15130 PF01195 Peptidyl-tRNA hydrolase RR41_RS15135 PF02261 Aspartate decarboxylase RR41_RS15150 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RR41_RS15160 PF03070 TENA/THI-4/PQQC family RR41_RS15160 PF02581 Thiamine monophosphate synthase RR41_RS15160 PF08543 Phosphomethylpyrimidine kinase RR41_RS15165 PF04972 BON domain RR41_RS15165 PF01476 LysM domain RR41_RS15170 PF00550 Phosphopantetheine attachment site RR41_RS15180 PF00698 Acyl transferase domain RR41_RS15185 PF01783 Ribosomal L32p protein family RR41_RS15190 PF02620 Large ribosomal RNA subunit accumulation protein YceD RR41_RS15195 PF04315 Elongation factor P hydroxylase RR41_RS15200 PF01300 Telomere recombination RR41_RS15205 PF02616 Segregation and condensation protein ScpA RR41_RS15210 PF04079 Segregation and condensation complex subunit ScpB RR41_RS15215 PF00849 RNA pseudouridylate synthase RR41_RS15215 PF01479 S4 domain RR41_RS15230 PF00155 Aminotransferase class I and II RR41_RS15235 PF06968 Biotin and Thiamin Synthesis associated domain RR41_RS15235 PF00202 Aminotransferase class-III RR41_RS15235 PF04055 Radical SAM superfamily RR41_RS15240 PF12697 Alpha/beta hydrolase family RR41_RS15240 PF08241 Methyltransferase domain RR41_RS15245 PF02358 Trehalose-phosphatase RR41_RS15250 PF00982 Glycosyltransferase family 20 RR41_RS15255 PF07690 Major Facilitator Superfamily RR41_RS15260 PF00210 Ferritin-like domain RR41_RS15265 PF12826 Helix-hairpin-helix motif RR41_RS15265 PF00533 BRCA1 C Terminus (BRCT) domain RR41_RS15265 PF01653 NAD-dependent DNA ligase adenylation domain RR41_RS15265 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RR41_RS15265 PF03120 NAD-dependent DNA ligase OB-fold domain RR41_RS15275 PF06470 SMC proteins Flexible Hinge Domain RR41_RS15275 PF02463 RecF/RecN/SMC N terminal domain RR41_RS15285 PF01925 Sulfite exporter TauE/SafE RR41_RS15295 PF03309 Type III pantothenate kinase RR41_RS15300 PF02978 Signal peptide binding domain RR41_RS15300 PF02881 SRP54-type protein, helical bundle domain RR41_RS15300 PF00448 SRP54-type protein, GTPase domain RR41_RS15310 PF01207 Dihydrouridine synthase (Dus) RR41_RS15340 PF00692 dUTPase RR41_RS15355 PF01048 Phosphorylase superfamily RR41_RS15360 PF10609 NUBPL iron-transfer P-loop NTPase RR41_RS15370 PF09334 tRNA synthetases class I (M) RR41_RS15370 PF01588 Putative tRNA binding domain RR41_RS15395 PF13533 Biotin-lipoyl like RR41_RS15400 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS15415 PF05552 Conserved TM helix RR41_RS15430 PF00970 Oxidoreductase FAD-binding domain RR41_RS15430 PF00175 Oxidoreductase NAD-binding domain RR41_RS15435 PF03466 LysR substrate binding domain RR41_RS15435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS15440 PF00313 'Cold-shock' DNA-binding domain RR41_RS15450 PF00361 Proton-conducting membrane transporter RR41_RS15455 PF00361 Proton-conducting membrane transporter RR41_RS15460 PF00361 Proton-conducting membrane transporter RR41_RS15460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RR41_RS15465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RR41_RS15470 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RR41_RS15475 PF12838 4Fe-4S dicluster domain RR41_RS15480 PF00146 NADH dehydrogenase RR41_RS15485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RR41_RS15485 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RR41_RS15485 PF00384 Molybdopterin oxidoreductase RR41_RS15490 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RR41_RS15490 PF10531 SLBB domain RR41_RS15490 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RR41_RS15500 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RR41_RS15500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RR41_RS15505 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RR41_RS15510 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RR41_RS15515 PF17151 Periplasmic sensor domain RR41_RS15515 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS15525 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS15525 PF00672 HAMP domain RR41_RS15530 PF00486 Transcriptional regulatory protein, C terminal RR41_RS15530 PF00072 Response regulator receiver domain RR41_RS15540 PF02867 Ribonucleotide reductase, barrel domain RR41_RS15540 PF00317 Ribonucleotide reductase, all-alpha domain RR41_RS15540 PF03477 ATP cone domain RR41_RS15550 PF00268 Ribonucleotide reductase, small chain RR41_RS15565 PF01613 Flavin reductase like domain RR41_RS15570 PF01717 Cobalamin-independent synthase, Catalytic domain RR41_RS15570 PF08267 Cobalamin-independent synthase, N-terminal domain RR41_RS15580 PF03466 LysR substrate binding domain RR41_RS15580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS15585 PF01810 LysE type translocator RR41_RS15595 PF12833 Helix-turn-helix domain RR41_RS15595 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RR41_RS15610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS15610 PF03466 LysR substrate binding domain RR41_RS15615 PF07690 Major Facilitator Superfamily RR41_RS15625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS15625 PF03466 LysR substrate binding domain RR41_RS15630 PF14537 Cytochrome c3 RR41_RS15630 PF00890 FAD binding domain RR41_RS15640 PF02515 CoA-transferase family III RR41_RS15645 PF07690 Major Facilitator Superfamily RR41_RS15650 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS15650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS15650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS15665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS15665 PF03466 LysR substrate binding domain RR41_RS15670 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS15670 PF00107 Zinc-binding dehydrogenase RR41_RS15675 PF00962 Adenosine/AMP deaminase RR41_RS15700 PF02445 Quinolinate synthetase A protein RR41_RS15705 PF01960 ArgJ family RR41_RS15710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RR41_RS15710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RR41_RS15715 PF00893 Small Multidrug Resistance protein RR41_RS15725 PF05275 Copper resistance protein B precursor (CopB) RR41_RS15730 PF00394 Multicopper oxidase RR41_RS15730 PF07732 Multicopper oxidase RR41_RS15730 PF07731 Multicopper oxidase RR41_RS15745 PF00834 Ribulose-phosphate 3 epimerase family RR41_RS15755 PF00756 Putative esterase RR41_RS15765 PF04445 Putative SAM-dependent methyltransferase RR41_RS15770 PF00814 Glycoprotease family RR41_RS15775 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS15780 PF00293 NUDIX domain RR41_RS15795 PF04715 Anthranilate synthase component I, N terminal region RR41_RS15795 PF00425 chorismate binding enzyme RR41_RS15800 PF00155 Aminotransferase class I and II RR41_RS15805 PF00815 Histidinol dehydrogenase RR41_RS15810 PF01634 ATP phosphoribosyltransferase RR41_RS15815 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RR41_RS15820 PF01722 BolA-like protein RR41_RS15825 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RR41_RS15830 PF04963 Sigma-54 factor, core binding domain RR41_RS15830 PF00309 Sigma-54 factor, Activator interacting domain (AID) RR41_RS15830 PF04552 Sigma-54, DNA binding domain RR41_RS15875 PF00795 Carbon-nitrogen hydrolase RR41_RS15885 PF01047 MarR family RR41_RS15890 PF02566 OsmC-like protein RR41_RS15895 PF00437 Type II/IV secretion system protein RR41_RS15915 PF01612 3'-5' exonuclease RR41_RS15915 PF00476 DNA polymerase family A RR41_RS15915 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RR41_RS15915 PF01367 5'-3' exonuclease, C-terminal SAM fold RR41_RS15920 PF02325 YGGT family RR41_RS15925 PF14748 Pyrroline-5-carboxylate reductase dimerisation RR41_RS15925 PF03807 NADP oxidoreductase coenzyme F420-dependent RR41_RS15930 PF11734 TilS substrate C-terminal domain RR41_RS15930 PF01171 PP-loop family RR41_RS15930 PF09179 TilS substrate binding domain RR41_RS15935 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RR41_RS15940 PF02541 Ppx/GppA phosphatase family RR41_RS15945 PF00085 Thioredoxin RR41_RS15950 PF07498 Rho termination factor, N-terminal domain RR41_RS15950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RR41_RS15950 PF07497 Rho termination factor, RNA-binding domain RR41_RS15960 PF00216 Bacterial DNA-binding protein RR41_RS15965 PF01588 Putative tRNA binding domain RR41_RS15965 PF03147 Ferredoxin-fold anticodon binding domain RR41_RS15965 PF03483 B3/4 domain RR41_RS15965 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RR41_RS15965 PF03484 tRNA synthetase B5 domain RR41_RS15970 PF01409 tRNA synthetases class II core domain (F) RR41_RS15970 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RR41_RS15990 PF00453 Ribosomal protein L20 RR41_RS15995 PF01632 Ribosomal protein L35 RR41_RS16000 PF07690 Major Facilitator Superfamily RR41_RS16005 PF09335 SNARE associated Golgi protein RR41_RS16010 PF02798 Glutathione S-transferase, N-terminal domain RR41_RS16010 PF00043 Glutathione S-transferase, C-terminal domain RR41_RS16015 PF05198 Translation initiation factor IF-3, N-terminal domain RR41_RS16015 PF00707 Translation initiation factor IF-3, C-terminal domain RR41_RS16020 PF03129 Anticodon binding domain RR41_RS16020 PF02824 TGS domain RR41_RS16020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RR41_RS16020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RR41_RS16025 PF13193 AMP-binding enzyme C-terminal domain RR41_RS16025 PF00501 AMP-binding enzyme RR41_RS16030 PF04751 Protein of unknown function (DUF615) RR41_RS16035 PF00381 PTS HPr component phosphorylation site RR41_RS16040 PF03668 P-loop ATPase protein family RR41_RS16045 PF02569 Pantoate-beta-alanine ligase RR41_RS16050 PF02548 Ketopantoate hydroxymethyltransferase RR41_RS16055 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RR41_RS16060 PF12627 Probable RNA and SrmB- binding site of polymerase A RR41_RS16060 PF12626 Polymerase A arginine-rich C-terminus RR41_RS16060 PF01743 Poly A polymerase head domain RR41_RS16070 PF03819 MazG nucleotide pyrophosphohydrolase domain RR41_RS16080 PF13291 ACT domain RR41_RS16080 PF04607 Region found in RelA / SpoT proteins RR41_RS16080 PF02824 TGS domain RR41_RS16085 PF05958 tRNA (Uracil-5-)-methyltransferase RR41_RS16095 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS16100 PF01627 Hpt domain RR41_RS16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS16100 PF00672 HAMP domain RR41_RS16100 PF00072 Response regulator receiver domain RR41_RS16100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RR41_RS16100 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS16105 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS16110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RR41_RS16110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RR41_RS16115 PF01261 Xylose isomerase-like TIM barrel RR41_RS16125 PF00106 short chain dehydrogenase RR41_RS16130 PF02233 NAD(P) transhydrogenase beta subunit RR41_RS16135 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RR41_RS16140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RR41_RS16140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RR41_RS16145 PF00892 EamA-like transporter family RR41_RS16155 PF07690 Major Facilitator Superfamily RR41_RS16160 PF01207 Dihydrouridine synthase (Dus) RR41_RS16170 PF03466 LysR substrate binding domain RR41_RS16170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS16175 PF00899 ThiF family RR41_RS16180 PF00330 Aconitase family (aconitate hydratase) RR41_RS16180 PF00694 Aconitase C-terminal domain RR41_RS16185 PF01026 TatD related DNase RR41_RS16200 PF16658 Class II release factor RF3, C-terminal domain RR41_RS16200 PF00009 Elongation factor Tu GTP binding domain RR41_RS16200 PF03144 Elongation factor Tu domain 2 RR41_RS16205 PF00665 Integrase core domain RR41_RS16205 PF13333 Integrase core domain RR41_RS16205 PF13276 HTH-like domain RR41_RS16215 PF04151 Bacterial pre-peptidase C-terminal domain RR41_RS16225 PF16884 N-terminal domain of oxidoreductase RR41_RS16225 PF00107 Zinc-binding dehydrogenase RR41_RS16230 PF00440 Bacterial regulatory proteins, tetR family RR41_RS16230 PF16925 Tetracyclin repressor-like, C-terminal domain RR41_RS16240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR41_RS16250 PF00465 Iron-containing alcohol dehydrogenase RR41_RS16260 PF00756 Putative esterase RR41_RS16265 PF00107 Zinc-binding dehydrogenase RR41_RS16265 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS16270 PF02583 Metal-sensitive transcriptional repressor RR41_RS16275 PF02801 Beta-ketoacyl synthase, C-terminal domain RR41_RS16275 PF00698 Acyl transferase domain RR41_RS16275 PF00109 Beta-ketoacyl synthase, N-terminal domain RR41_RS16275 PF08659 KR domain RR41_RS16275 PF00550 Phosphopantetheine attachment site RR41_RS16275 PF14765 Polyketide synthase dehydratase RR41_RS16275 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS16275 PF16197 Ketoacyl-synthetase C-terminal extension RR41_RS16280 PF00107 Zinc-binding dehydrogenase RR41_RS16280 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS16285 PF03466 LysR substrate binding domain RR41_RS16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS16290 PF00106 short chain dehydrogenase RR41_RS16295 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS16295 PF00107 Zinc-binding dehydrogenase RR41_RS16300 PF00872 Transposase, Mutator family RR41_RS16320 PF00563 EAL domain RR41_RS16320 PF00990 Diguanylate cyclase, GGDEF domain RR41_RS16320 PF03707 Bacterial signalling protein N terminal repeat RR41_RS16325 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RR41_RS16325 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RR41_RS16330 PF10369 Small subunit of acetolactate synthase RR41_RS16335 PF00205 Thiamine pyrophosphate enzyme, central domain RR41_RS16335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RR41_RS16335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RR41_RS16355 PF09334 tRNA synthetases class I (M) RR41_RS16355 PF13603 Leucyl-tRNA synthetase, Domain 2 RR41_RS16355 PF00133 tRNA synthetases class I (I, L, M and V) RR41_RS16355 PF08264 Anticodon-binding domain of tRNA RR41_RS16370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR41_RS16375 PF02687 FtsX-like permease family RR41_RS16375 PF00005 ABC transporter RR41_RS16375 PF12704 MacB-like periplasmic core domain RR41_RS16380 PF02321 Outer membrane efflux protein RR41_RS16395 PF00929 Exonuclease RR41_RS16400 PF03193 RsgA GTPase RR41_RS16410 PF00462 Glutaredoxin RR41_RS16415 PF02556 Preprotein translocase subunit SecB RR41_RS16425 PF01926 50S ribosome-binding GTPase RR41_RS16425 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RR41_RS16430 PF13360 PQQ-like domain RR41_RS16440 PF13393 Histidyl-tRNA synthetase RR41_RS16440 PF03129 Anticodon binding domain RR41_RS16445 PF04551 GcpE protein RR41_RS16450 PF13464 Domain of unknown function (DUF4115) RR41_RS16460 PF04055 Radical SAM superfamily RR41_RS16465 PF00334 Nucleoside diphosphate kinase RR41_RS16470 PF04384 Iron-sulphur cluster assembly RR41_RS16475 PF01569 PAP2 superfamily RR41_RS16480 PF00534 Glycosyl transferases group 1 RR41_RS16480 PF13439 Glycosyltransferase Family 4 RR41_RS16485 PF00595 PDZ domain RR41_RS16485 PF03572 Peptidase family S41 RR41_RS16485 PF17804 Tail specific protease N-terminal domain RR41_RS16485 PF11818 C-terminal domain of tail specific protease (DUF3340) RR41_RS16490 PF00933 Glycosyl hydrolase family 3 N terminal domain RR41_RS16500 PF00561 alpha/beta hydrolase fold RR41_RS16505 PF00171 Aldehyde dehydrogenase family RR41_RS16510 PF00171 Aldehyde dehydrogenase family RR41_RS16515 PF01202 Shikimate kinase RR41_RS16520 PF02447 GntP family permease RR41_RS16525 PF01081 KDPG and KHG aldolase RR41_RS16530 PF00920 Dehydratase family RR41_RS16535 PF00871 Acetokinase family RR41_RS16540 PF07085 DRTGG domain RR41_RS16540 PF01515 Phosphate acetyl/butaryl transferase RR41_RS16545 PF05683 Fumarase C-terminus RR41_RS16545 PF05681 Fumarate hydratase (Fumerase) RR41_RS16560 PF07724 AAA domain (Cdc48 subfamily) RR41_RS16560 PF10431 C-terminal, D2-small domain, of ClpB protein RR41_RS16560 PF06689 ClpX C4-type zinc finger RR41_RS16565 PF00574 Clp protease RR41_RS16570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR41_RS16570 PF05698 Bacterial trigger factor protein (TF) C-terminus RR41_RS16570 PF05697 Bacterial trigger factor protein (TF) RR41_RS16575 PF07715 TonB-dependent Receptor Plug Domain RR41_RS16575 PF00593 TonB dependent receptor RR41_RS16580 PF03050 Transposase IS66 family RR41_RS16580 PF13817 IS66 C-terminal element RR41_RS16580 PF13007 Transposase C of IS166 homeodomain RR41_RS16580 PF13005 zinc-finger binding domain of transposase IS66 RR41_RS16595 PF07715 TonB-dependent Receptor Plug Domain RR41_RS16595 PF00593 TonB dependent receptor RR41_RS16600 PF13640 2OG-Fe(II) oxygenase superfamily RR41_RS16600 PF18331 PKHD-type hydroxylase C-terminal domain RR41_RS16605 PF00682 HMGL-like RR41_RS16605 PF08502 LeuA allosteric (dimerisation) domain RR41_RS16610 PF00561 alpha/beta hydrolase fold RR41_RS16615 PF00561 alpha/beta hydrolase fold RR41_RS16615 PF07021 Methionine biosynthesis protein MetW RR41_RS16630 PF01725 Ham1 family RR41_RS16640 PF02416 mttA/Hcf106 family RR41_RS16645 PF02416 mttA/Hcf106 family RR41_RS16650 PF00902 Sec-independent protein translocase protein (TatC) RR41_RS16670 PF01790 Prolipoprotein diacylglyceryl transferase RR41_RS16685 PF00303 Thymidylate synthase RR41_RS16690 PF00186 Dihydrofolate reductase RR41_RS16700 PF01625 Peptide methionine sulfoxide reductase RR41_RS16710 PF01618 MotA/TolQ/ExbB proton channel family RR41_RS16720 PF00551 Formyl transferase RR41_RS16720 PF01842 ACT domain RR41_RS16730 PF00171 Aldehyde dehydrogenase family RR41_RS16735 PF00830 Ribosomal L28 family RR41_RS16740 PF00471 Ribosomal protein L33 RR41_RS16745 PF00999 Sodium/hydrogen exchanger family RR41_RS16745 PF02254 TrkA-N domain RR41_RS16765 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RR41_RS16770 PF00580 UvrD/REP helicase N-terminal domain RR41_RS16770 PF13361 UvrD-like helicase C-terminal domain RR41_RS16785 PF08272 Topoisomerase I zinc-ribbon-like RR41_RS16785 PF01131 DNA topoisomerase RR41_RS16785 PF01751 Toprim domain RR41_RS16785 PF01396 Topoisomerase DNA binding C4 zinc finger RR41_RS16795 PF01638 HxlR-like helix-turn-helix RR41_RS16800 PF00107 Zinc-binding dehydrogenase RR41_RS16800 PF08240 Alcohol dehydrogenase GroES-like domain RR41_RS16805 PF04102 SlyX RR41_RS16810 PF00005 ABC transporter RR41_RS16810 PF16326 ABC transporter C-terminal domain RR41_RS16810 PF12848 ABC transporter RR41_RS16815 PF01810 LysE type translocator RR41_RS16820 PF03279 Bacterial lipid A biosynthesis acyltransferase RR41_RS16830 PF00375 Sodium:dicarboxylate symporter family RR41_RS16840 PF01118 Semialdehyde dehydrogenase, NAD binding domain RR41_RS16840 PF02774 Semialdehyde dehydrogenase, dimerisation domain RR41_RS16860 PF01416 tRNA pseudouridine synthase RR41_RS16870 PF01176 Translation initiation factor 1A / IF-1 RR41_RS16885 PF00180 Isocitrate/isopropylmalate dehydrogenase RR41_RS16895 PF00694 Aconitase C-terminal domain RR41_RS16900 PF00330 Aconitase family (aconitate hydratase) RR41_RS16910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS16910 PF03466 LysR substrate binding domain RR41_RS16930 PF00293 NUDIX domain RR41_RS16935 PF02896 PEP-utilising enzyme, TIM barrel domain RR41_RS16935 PF00391 PEP-utilising enzyme, mobile domain RR41_RS16935 PF01590 GAF domain RR41_RS16935 PF05524 PEP-utilising enzyme, N-terminal RR41_RS16940 PF00141 Peroxidase RR41_RS16945 PF12706 Beta-lactamase superfamily domain RR41_RS16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS16950 PF03466 LysR substrate binding domain RR41_RS16955 PF00872 Transposase, Mutator family RR41_RS16965 PF02798 Glutathione S-transferase, N-terminal domain RR41_RS16970 PF08279 HTH domain RR41_RS16970 PF13280 WYL domain RR41_RS16975 PF13419 Haloacid dehalogenase-like hydrolase RR41_RS16980 PF01479 S4 domain RR41_RS16980 PF00849 RNA pseudouridylate synthase RR41_RS16985 PF00575 S1 RNA binding domain RR41_RS16985 PF10150 Ribonuclease E/G family RR41_RS16985 PF12111 Polyribonucleotide phosphorylase C terminal RR41_RS16990 PF13193 AMP-binding enzyme C-terminal domain RR41_RS16990 PF00501 AMP-binding enzyme RR41_RS17005 PF03466 LysR substrate binding domain RR41_RS17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS17010 PF00106 short chain dehydrogenase RR41_RS17015 PF06969 HemN C-terminal domain RR41_RS17015 PF04055 Radical SAM superfamily RR41_RS17025 PF01554 MatE RR41_RS17030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS17030 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS17030 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS17035 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS17035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS17040 PF03109 ABC1 family RR41_RS17045 PF01197 Ribosomal protein L31 RR41_RS17055 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RR41_RS17065 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR41_RS17065 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RR41_RS17065 PF13247 4Fe-4S dicluster domain RR41_RS17075 PF03884 DNA gyrase inhibitor YacG RR41_RS17080 PF00753 Metallo-beta-lactamase superfamily RR41_RS17085 PF00762 Ferrochelatase RR41_RS17095 PF01177 Asp/Glu/Hydantoin racemase RR41_RS17115 PF01206 Sulfurtransferase TusA RR41_RS17120 PF00571 CBS domain RR41_RS17120 PF03471 Transporter associated domain RR41_RS17125 PF00795 Carbon-nitrogen hydrolase RR41_RS17130 PF01588 Putative tRNA binding domain RR41_RS17140 PF08334 Type II secretion system (T2SS), protein G RR41_RS17140 PF07963 Prokaryotic N-terminal methylation motif RR41_RS17145 PF00482 Type II secretion system (T2SS), protein F RR41_RS17150 PF00270 DEAD/DEAH box helicase RR41_RS17150 PF17764 3′ DNA-binding domain (3′BD) RR41_RS17150 PF18074 Primosomal protein N C-terminal domain RR41_RS17150 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RR41_RS17150 PF00271 Helicase conserved C-terminal domain RR41_RS17155 PF02254 TrkA-N domain RR41_RS17155 PF00999 Sodium/hydrogen exchanger family RR41_RS17160 PF01430 Hsp33 protein RR41_RS17170 PF01556 DnaJ C terminal domain RR41_RS17170 PF00226 DnaJ domain RR41_RS17180 PF01544 CorA-like Mg2+ transporter protein RR41_RS17185 PF00575 S1 RNA binding domain RR41_RS17185 PF01138 3' exoribonuclease family, domain 1 RR41_RS17185 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RR41_RS17185 PF00013 KH domain RR41_RS17185 PF03725 3' exoribonuclease family, domain 2 RR41_RS17190 PF00312 Ribosomal protein S15 RR41_RS17195 PF00144 Beta-lactamase RR41_RS17200 PF13538 UvrD-like helicase C-terminal domain RR41_RS17205 PF12705 PD-(D/E)XK nuclease superfamily RR41_RS17205 PF00580 UvrD/REP helicase N-terminal domain RR41_RS17205 PF13361 UvrD-like helicase C-terminal domain RR41_RS17210 PF17946 RecC C-terminal domain RR41_RS17220 PF03976 Polyphosphate kinase 2 (PPK2) RR41_RS17230 PF01209 ubiE/COQ5 methyltransferase family RR41_RS17240 PF03109 ABC1 family RR41_RS17245 PF01494 FAD binding domain RR41_RS17250 PF01502 Phosphoribosyl-AMP cyclohydrolase RR41_RS17265 PF00361 Proton-conducting membrane transporter RR41_RS17265 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RR41_RS17265 PF13244 Domain of unknown function (DUF4040) RR41_RS17265 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RR41_RS17270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RR41_RS17275 PF00361 Proton-conducting membrane transporter RR41_RS17280 PF01899 Na+/H+ ion antiporter subunit RR41_RS17285 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RR41_RS17290 PF03334 Na+/H+ antiporter subunit RR41_RS17295 PF02033 Ribosome-binding factor A RR41_RS17300 PF04760 Translation initiation factor IF-2, N-terminal region RR41_RS17300 PF11987 Translation-initiation factor 2 RR41_RS17300 PF00009 Elongation factor Tu GTP binding domain RR41_RS17300 PF08364 Bacterial translation initiation factor IF-2 associated region RR41_RS17305 PF13184 NusA-like KH domain RR41_RS17305 PF08529 NusA N-terminal domain RR41_RS17305 PF00575 S1 RNA binding domain RR41_RS17310 PF17384 RimP C-terminal SH3 domain RR41_RS17310 PF02576 RimP N-terminal domain RR41_RS17330 PF03840 Preprotein translocase SecG subunit RR41_RS17335 PF00121 Triosephosphate isomerase RR41_RS17340 PF00437 Type II/IV secretion system protein RR41_RS17340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RR41_RS17345 PF00482 Type II secretion system (T2SS), protein F RR41_RS17350 PF06750 Bacterial Peptidase A24 N-terminal domain RR41_RS17350 PF01478 Type IV leader peptidase family RR41_RS17355 PF01121 Dephospho-CoA kinase RR41_RS17365 PF00588 SpoU rRNA Methylase family RR41_RS17365 PF08032 RNA 2'-O ribose methyltransferase substrate binding RR41_RS17370 PF06865 Pyrimidine/purine nucleoside phosphorylase RR41_RS17380 PF02463 RecF/RecN/SMC N terminal domain RR41_RS17385 PF02622 Uncharacterized ACR, COG1678 RR41_RS17390 PF03652 Holliday junction resolvase RR41_RS17395 PF13533 Biotin-lipoyl like RR41_RS17420 PF12833 Helix-turn-helix domain RR41_RS17420 PF02805 Metal binding domain of Ada RR41_RS17420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RR41_RS17420 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RR41_RS17425 PF01066 CDP-alcohol phosphatidyltransferase RR41_RS17435 PF01541 GIY-YIG catalytic domain RR41_RS17435 PF02151 UvrB/uvrC motif RR41_RS17435 PF08459 UvrC Helix-hairpin-helix N-terminal RR41_RS17450 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR41_RS17450 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS17450 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR41_RS17455 PF02803 Thiolase, C-terminal domain RR41_RS17455 PF00108 Thiolase, N-terminal domain RR41_RS17475 PF00376 MerR family regulatory protein RR41_RS17475 PF09278 MerR, DNA binding RR41_RS17485 PF01323 DSBA-like thioredoxin domain RR41_RS17500 PF00183 Hsp90 protein RR41_RS17500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS17515 PF03553 Na+/H+ antiporter family RR41_RS17515 PF13726 Na+-H+ antiporter family RR41_RS17520 PF00561 alpha/beta hydrolase fold RR41_RS17540 PF04998 RNA polymerase Rpb1, domain 5 RR41_RS17540 PF05000 RNA polymerase Rpb1, domain 4 RR41_RS17540 PF04983 RNA polymerase Rpb1, domain 3 RR41_RS17540 PF00623 RNA polymerase Rpb1, domain 2 RR41_RS17540 PF04997 RNA polymerase Rpb1, domain 1 RR41_RS17545 PF04563 RNA polymerase beta subunit RR41_RS17545 PF04565 RNA polymerase Rpb2, domain 3 RR41_RS17545 PF10385 RNA polymerase beta subunit external 1 domain RR41_RS17545 PF04561 RNA polymerase Rpb2, domain 2 RR41_RS17545 PF04560 RNA polymerase Rpb2, domain 7 RR41_RS17545 PF00562 RNA polymerase Rpb2, domain 6 RR41_RS17550 PF00542 Ribosomal protein L7/L12 C-terminal domain RR41_RS17550 PF16320 Ribosomal protein L7/L12 dimerisation domain RR41_RS17555 PF00466 Ribosomal protein L10 RR41_RS17560 PF00687 Ribosomal protein L1p/L10e family RR41_RS17565 PF00298 Ribosomal protein L11, RNA binding domain RR41_RS17565 PF03946 Ribosomal protein L11, N-terminal domain RR41_RS17570 PF00467 KOW motif RR41_RS17570 PF02357 Transcription termination factor nusG RR41_RS17575 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RR41_RS17585 PF03144 Elongation factor Tu domain 2 RR41_RS17585 PF00009 Elongation factor Tu GTP binding domain RR41_RS17585 PF03143 Elongation factor Tu C-terminal domain RR41_RS17610 PF04715 Anthranilate synthase component I, N terminal region RR41_RS17610 PF00425 chorismate binding enzyme RR41_RS17615 PF13419 Haloacid dehalogenase-like hydrolase RR41_RS17620 PF12401 Protein of unknown function (DUF2662) RR41_RS17620 PF00498 FHA domain RR41_RS17625 PF03958 Bacterial type II/III secretion system short domain RR41_RS17625 PF00263 Bacterial type II and III secretion system protein RR41_RS17640 PF00816 H-NS histone family RR41_RS17665 PF03900 Porphobilinogen deaminase, C-terminal domain RR41_RS17665 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RR41_RS17670 PF04397 LytTr DNA-binding domain RR41_RS17670 PF00072 Response regulator receiver domain RR41_RS17675 PF07694 5TMR of 5TMR-LYT RR41_RS17675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS17675 PF06580 Histidine kinase RR41_RS17680 PF14698 Argininosuccinate lyase C-terminal RR41_RS17680 PF00206 Lyase RR41_RS17685 PF04362 Bacterial Fe(2+) trafficking RR41_RS17690 PF01895 PhoU domain RR41_RS17695 PF02321 Outer membrane efflux protein RR41_RS17700 PF00892 EamA-like transporter family RR41_RS17715 PF01964 Radical SAM ThiC family RR41_RS17715 PF13667 ThiC-associated domain RR41_RS17720 PF00293 NUDIX domain RR41_RS17725 PF00149 Calcineurin-like phosphoesterase RR41_RS17730 PF01258 Prokaryotic dksA/traR C4-type zinc finger RR41_RS17735 PF00749 tRNA synthetases class I (E and Q), catalytic domain RR41_RS17740 PF01098 Cell cycle protein RR41_RS17745 PF08245 Mur ligase middle domain RR41_RS17745 PF02875 Mur ligase family, glutamate ligase domain RR41_RS17755 PF07670 Nucleoside recognition RR41_RS17755 PF07664 Ferrous iron transport protein B C terminus RR41_RS17755 PF02421 Ferrous iron transport protein B RR41_RS17765 PF02899 Phage integrase, N-terminal SAM-like domain RR41_RS17765 PF00589 Phage integrase family RR41_RS17770 PF13098 Thioredoxin-like domain RR41_RS17770 PF10411 Disulfide bond isomerase protein N-terminus RR41_RS17775 PF03447 Homoserine dehydrogenase, NAD binding domain RR41_RS17775 PF01842 ACT domain RR41_RS17775 PF00742 Homoserine dehydrogenase RR41_RS17780 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS17785 PF00768 D-alanyl-D-alanine carboxypeptidase RR41_RS17790 PF00196 Bacterial regulatory proteins, luxR family RR41_RS17790 PF00072 Response regulator receiver domain RR41_RS17795 PF00512 His Kinase A (phospho-acceptor) domain RR41_RS17795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS17800 PF00158 Sigma-54 interaction domain RR41_RS17800 PF00072 Response regulator receiver domain RR41_RS17800 PF02954 Bacterial regulatory protein, Fis family RR41_RS17805 PF03572 Peptidase family S41 RR41_RS17805 PF00595 PDZ domain RR41_RS17810 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RR41_RS17810 PF01676 Metalloenzyme superfamily RR41_RS17815 PF03739 Lipopolysaccharide export system permease LptF/LptG RR41_RS17825 PF00883 Cytosol aminopeptidase family, catalytic domain RR41_RS17825 PF02789 Cytosol aminopeptidase family, N-terminal domain RR41_RS17845 PF00677 Lumazine binding domain RR41_RS17855 PF01872 RibD C-terminal domain RR41_RS17855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RR41_RS17860 PF03477 ATP cone domain RR41_RS17865 PF00909 Ammonium Transporter Family RR41_RS17870 PF00543 Nitrogen regulatory protein P-II RR41_RS17880 PF01078 Magnesium chelatase, subunit ChlI RR41_RS17880 PF13335 Magnesium chelatase, subunit ChlI C-terminal RR41_RS17885 PF00155 Aminotransferase class I and II RR41_RS17885 PF00392 Bacterial regulatory proteins, gntR family RR41_RS17890 PF00596 Class II Aldolase and Adducin N-terminal domain RR41_RS17895 PF00701 Dihydrodipicolinate synthetase family RR41_RS17905 PF03573 outer membrane porin, OprD family RR41_RS17910 PF00719 Inorganic pyrophosphatase RR41_RS17925 PF00501 AMP-binding enzyme RR41_RS17925 PF13193 AMP-binding enzyme C-terminal domain RR41_RS17930 PF03989 DNA gyrase C-terminal domain, beta-propeller RR41_RS17930 PF00521 DNA gyrase/topoisomerase IV, subunit A RR41_RS17935 PF07690 Major Facilitator Superfamily RR41_RS17940 PF03458 UPF0126 domain RR41_RS17945 PF02810 SEC-C motif RR41_RS17950 PF03471 Transporter associated domain RR41_RS17950 PF03741 Integral membrane protein TerC family RR41_RS17955 PF03641 Possible lysine decarboxylase RR41_RS17960 PF07690 Major Facilitator Superfamily RR41_RS17970 PF00817 impB/mucB/samB family RR41_RS17970 PF11799 impB/mucB/samB family C-terminal domain RR41_RS17970 PF11798 IMS family HHH motif RR41_RS17985 PF04055 Radical SAM superfamily RR41_RS17985 PF08497 Radical SAM N-terminal RR41_RS17985 PF11842 Domain of unknown function (DUF3362) RR41_RS18005 PF03358 NADPH-dependent FMN reductase RR41_RS18015 PF00291 Pyridoxal-phosphate dependent enzyme RR41_RS18050 PF00440 Bacterial regulatory proteins, tetR family RR41_RS18075 PF01327 Polypeptide deformylase RR41_RS18085 PF02481 DNA recombination-mediator protein A RR41_RS18085 PF17782 DprA winged helix domain RR41_RS18090 PF01300 Telomere recombination RR41_RS18095 PF00892 EamA-like transporter family RR41_RS18100 PF00440 Bacterial regulatory proteins, tetR family RR41_RS18105 PF07690 Major Facilitator Superfamily RR41_RS18115 PF00255 Glutathione peroxidase RR41_RS18125 PF11008 Protein of unknown function (DUF2846) RR41_RS18130 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RR41_RS18135 PF02874 ATP synthase alpha/beta family, beta-barrel domain RR41_RS18135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RR41_RS18140 PF00231 ATP synthase RR41_RS18145 PF02874 ATP synthase alpha/beta family, beta-barrel domain RR41_RS18145 PF00306 ATP synthase alpha/beta chain, C terminal domain RR41_RS18145 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RR41_RS18150 PF00213 ATP synthase delta (OSCP) subunit RR41_RS18155 PF00430 ATP synthase B/B' CF(0) RR41_RS18160 PF00137 ATP synthase subunit C RR41_RS18165 PF00119 ATP synthase A chain RR41_RS18185 PF00005 ABC transporter RR41_RS18190 PF00950 ABC 3 transport family RR41_RS18195 PF01810 LysE type translocator RR41_RS18200 PF04261 Dyp-type peroxidase family RR41_RS18205 PF13737 Transposase DDE domain RR41_RS18215 PF03949 Malic enzyme, NAD binding domain RR41_RS18215 PF00390 Malic enzyme, N-terminal domain RR41_RS18220 PF03485 Arginyl tRNA synthetase N terminal domain RR41_RS18220 PF05746 DALR anticodon binding domain RR41_RS18220 PF00750 tRNA synthetases class I (R) RR41_RS18240 PF02678 Pirin RR41_RS18240 PF05726 Pirin C-terminal cupin domain RR41_RS18250 PF03551 Transcriptional regulator PadR-like family RR41_RS18255 PF01909 Nucleotidyltransferase domain RR41_RS18255 PF13427 Domain of unknown function (DUF4111) RR41_RS18260 PF00958 GMP synthase C terminal domain RR41_RS18260 PF00117 Glutamine amidotransferase class-I RR41_RS18260 PF02540 NAD synthase RR41_RS18265 PF04286 Protein of unknown function (DUF445) RR41_RS18270 PF07681 DoxX RR41_RS18275 PF09335 SNARE associated Golgi protein RR41_RS18290 PF13614 AAA domain RR41_RS18300 PF01722 BolA-like protein RR41_RS18315 PF00083 Sugar (and other) transporter RR41_RS18320 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS18325 PF00378 Enoyl-CoA hydratase/isomerase RR41_RS18330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR41_RS18330 PF02770 Acyl-CoA dehydrogenase, middle domain RR41_RS18330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR41_RS18335 PF00501 AMP-binding enzyme RR41_RS18335 PF13193 AMP-binding enzyme C-terminal domain RR41_RS18340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RR41_RS18340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RR41_RS18345 PF00171 Aldehyde dehydrogenase family RR41_RS18355 PF00324 Amino acid permease RR41_RS18360 PF00324 Amino acid permease RR41_RS18365 PF01042 Endoribonuclease L-PSP RR41_RS18370 PF00842 Alanine racemase, C-terminal domain RR41_RS18370 PF01168 Alanine racemase, N-terminal domain RR41_RS18375 PF01266 FAD dependent oxidoreductase RR41_RS18380 PF01037 Lrp/AsnC ligand binding domain RR41_RS18390 PF00593 TonB dependent receptor RR41_RS18390 PF07715 TonB-dependent Receptor Plug Domain RR41_RS18405 PF00849 RNA pseudouridylate synthase RR41_RS18430 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RR41_RS18430 PF04717 Type VI secretion system, phage-baseplate injector RR41_RS18430 PF13296 Putative type VI secretion system Rhs element Vgr RR41_RS18435 PF13737 Transposase DDE domain RR41_RS18475 PF00330 Aconitase family (aconitate hydratase) RR41_RS18475 PF00694 Aconitase C-terminal domain RR41_RS18480 PF00285 Citrate synthase, C-terminal domain RR41_RS18490 PF00392 Bacterial regulatory proteins, gntR family RR41_RS18490 PF07729 FCD domain RR41_RS18495 PF00155 Aminotransferase class I and II RR41_RS18500 PF09330 D-lactate dehydrogenase, membrane binding RR41_RS18500 PF01565 FAD binding domain RR41_RS18505 PF01070 FMN-dependent dehydrogenase RR41_RS18510 PF00392 Bacterial regulatory proteins, gntR family RR41_RS18510 PF07729 FCD domain RR41_RS18515 PF02652 L-lactate permease RR41_RS18520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RR41_RS18520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RR41_RS18520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RR41_RS18520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RR41_RS18525 PF16363 GDP-mannose 4,6 dehydratase RR41_RS18530 PF00342 Phosphoglucose isomerase RR41_RS18535 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RR41_RS18535 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RR41_RS18535 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RR41_RS18540 PF00483 Nucleotidyl transferase RR41_RS18545 PF02397 Bacterial sugar transferase RR41_RS18550 PF00953 Glycosyl transferase family 4 RR41_RS18560 PF13579 Glycosyl transferase 4-like domain RR41_RS18565 PF02350 UDP-N-acetylglucosamine 2-epimerase RR41_RS18570 PF01370 NAD dependent epimerase/dehydratase family RR41_RS18575 PF08485 Polysaccharide biosynthesis protein C-terminal RR41_RS18575 PF02719 Polysaccharide biosynthesis protein RR41_RS18600 PF02348 Cytidylyltransferase RR41_RS18605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RR41_RS18605 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RR41_RS18610 PF00483 Nucleotidyl transferase RR41_RS18615 PF00132 Bacterial transferase hexapeptide (six repeats) RR41_RS18620 PF03102 NeuB family RR41_RS18620 PF08666 SAF domain RR41_RS18625 PF02350 UDP-N-acetylglucosamine 2-epimerase RR41_RS18630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RR41_RS18635 PF02719 Polysaccharide biosynthesis protein RR41_RS18640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RR41_RS18640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RR41_RS18640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RR41_RS18645 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RR41_RS18645 PF10531 SLBB domain RR41_RS18645 PF02563 Polysaccharide biosynthesis/export protein RR41_RS18650 PF01451 Low molecular weight phosphotyrosine protein phosphatase RR41_RS18655 PF02706 Chain length determinant protein RR41_RS18655 PF13807 G-rich domain on putative tyrosine kinase RR41_RS18655 PF13614 AAA domain RR41_RS18665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR41_RS18665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RR41_RS18670 PF03023 Lipid II flippase MurJ RR41_RS18675 PF01510 N-acetylmuramoyl-L-alanine amidase RR41_RS18680 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RR41_RS18680 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RR41_RS18695 PF01138 3' exoribonuclease family, domain 1 RR41_RS18695 PF03725 3' exoribonuclease family, domain 2 RR41_RS18700 PF00487 Fatty acid desaturase RR41_RS18705 PF00175 Oxidoreductase NAD-binding domain RR41_RS18710 PF00440 Bacterial regulatory proteins, tetR family RR41_RS18715 PF00440 Bacterial regulatory proteins, tetR family RR41_RS18715 PF08360 QacR-like protein, C-terminal region RR41_RS18720 PF01323 DSBA-like thioredoxin domain RR41_RS18730 PF13419 Haloacid dehalogenase-like hydrolase RR41_RS18735 PF00106 short chain dehydrogenase RR41_RS18750 PF00583 Acetyltransferase (GNAT) family RR41_RS18750 PF00696 Amino acid kinase family RR41_RS18755 PF09084 NMT1/THI5 like RR41_RS18760 PF09084 NMT1/THI5 like RR41_RS18765 PF00296 Luciferase-like monooxygenase RR41_RS18770 PF00528 Binding-protein-dependent transport system inner membrane component RR41_RS18775 PF00005 ABC transporter RR41_RS18780 PF08362 YcdC-like protein, C-terminal region RR41_RS18780 PF00440 Bacterial regulatory proteins, tetR family RR41_RS18785 PF01048 Phosphorylase superfamily RR41_RS18795 PF01687 Riboflavin kinase RR41_RS18795 PF06574 FAD synthetase RR41_RS18800 PF00133 tRNA synthetases class I (I, L, M and V) RR41_RS18800 PF08264 Anticodon-binding domain of tRNA RR41_RS18800 PF06827 Zinc finger found in FPG and IleRS RR41_RS18805 PF01252 Signal peptidase (SPase) II RR41_RS18810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR41_RS18850 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RR41_RS18855 PF07859 alpha/beta hydrolase fold RR41_RS18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR41_RS18875 PF03466 LysR substrate binding domain RR41_RS18880 PF01025 GrpE RR41_RS18885 PF00012 Hsp70 protein RR41_RS18905 PF13406 Transglycosylase SLT domain RR41_RS18910 PF02222 ATP-grasp domain RR41_RS18910 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RR41_RS18915 PF00731 AIR carboxylase RR41_RS18930 PF01225 Mur ligase family, catalytic domain RR41_RS18930 PF02875 Mur ligase family, glutamate ligase domain RR41_RS18930 PF08245 Mur ligase middle domain RR41_RS18940 PF00872 Transposase, Mutator family RR41_RS18950 PF01569 PAP2 superfamily RR41_RS18955 PF03741 Integral membrane protein TerC family RR41_RS18965 PF03738 Glutathionylspermidine synthase preATP-grasp RR41_RS18970 PF00355 Rieske [2Fe-2S] domain RR41_RS18975 PF01979 Amidohydrolase family RR41_RS18985 PF00156 Phosphoribosyl transferase domain RR41_RS18995 PF10411 Disulfide bond isomerase protein N-terminus RR41_RS18995 PF13098 Thioredoxin-like domain RR41_RS19000 PF16916 Dimerisation domain of Zinc Transporter RR41_RS19000 PF01545 Cation efflux family RR41_RS19005 PF02583 Metal-sensitive transcriptional repressor RR41_RS19010 PF10396 GTP-binding protein TrmE N-terminus RR41_RS19010 PF12631 MnmE helical domain RR41_RS19010 PF01926 50S ribosome-binding GTPase RR41_RS19015 PF14849 YidC periplasmic domain RR41_RS19015 PF02096 60Kd inner membrane protein RR41_RS19020 PF01809 Putative membrane protein insertion efficiency factor RR41_RS19025 PF00825 Ribonuclease P RR41_RS19030 PF00468 Ribosomal protein L34 RR41_RS19060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR41_RS19060 PF01751 Toprim domain RR41_RS19060 PF00986 DNA gyrase B subunit, carboxyl terminus RR41_RS19060 PF00204 DNA gyrase B RR41_RS19060 PF18053 DNA gyrase B subunit insert domain RR41_RS19115 PF00313 'Cold-shock' DNA-binding domain