locus-tag class description DYB08_RS00005 PF00743 Flavin-binding monooxygenase-like DYB08_RS00015 PF03969 AFG1-like ATPase DYB08_RS00020 PF01274 Malate synthase DYB08_RS00030 PF02472 Biopolymer transport protein ExbD/TolR DYB08_RS00035 PF02472 Biopolymer transport protein ExbD/TolR DYB08_RS00040 PF01618 MotA/TolQ/ExbB proton channel family DYB08_RS00050 PF00593 TonB dependent receptor DYB08_RS00050 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS00070 PF01432 Peptidase family M3 DYB08_RS00075 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS00080 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS00085 PF00005 ABC transporter DYB08_RS00085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYB08_RS00100 PF00459 Inositol monophosphatase family DYB08_RS00110 PF01649 Ribosomal protein S20 DYB08_RS00115 PF13460 NAD(P)H-binding DYB08_RS00120 PF03737 Aldolase/RraA DYB08_RS00140 PF02559 CarD-like/TRCF domain DYB08_RS00140 PF00270 DEAD/DEAH box helicase DYB08_RS00140 PF00271 Helicase conserved C-terminal domain DYB08_RS00140 PF03461 TRCF domain DYB08_RS00140 PF17757 UvrB interaction domain DYB08_RS00150 PF00211 Adenylate and Guanylate cyclase catalytic domain DYB08_RS00155 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS00160 PF00012 Hsp70 protein DYB08_RS00165 PF07743 HSCB C-terminal oligomerisation domain DYB08_RS00165 PF00226 DnaJ domain DYB08_RS00170 PF01521 Iron-sulphur cluster biosynthesis DYB08_RS00175 PF01592 NifU-like N terminal domain DYB08_RS00180 PF00266 Aminotransferase class-V DYB08_RS00185 PF02082 Transcriptional regulator DYB08_RS00200 PF00216 Bacterial DNA-binding protein DYB08_RS00205 PF09312 SurA N-terminal domain DYB08_RS00205 PF00639 PPIC-type PPIASE domain DYB08_RS00210 PF12833 Helix-turn-helix domain DYB08_RS00210 PF12852 Cupin DYB08_RS00215 PF00487 Fatty acid desaturase DYB08_RS00220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS00220 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS00220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS00230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS00230 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS00230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS00240 PF03109 ABC1 family DYB08_RS00250 PF04073 Aminoacyl-tRNA editing domain DYB08_RS00255 PF04183 IucA / IucC family DYB08_RS00255 PF06276 Ferric iron reductase FhuF-like transporter DYB08_RS00260 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DYB08_RS00265 PF07690 Major Facilitator Superfamily DYB08_RS00270 PF04183 IucA / IucC family DYB08_RS00270 PF06276 Ferric iron reductase FhuF-like transporter DYB08_RS00275 PF04183 IucA / IucC family DYB08_RS00275 PF06276 Ferric iron reductase FhuF-like transporter DYB08_RS00290 PF00593 TonB dependent receptor DYB08_RS00290 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS00330 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DYB08_RS00335 PF02277 Phosphoribosyltransferase DYB08_RS00350 PF02654 Cobalamin-5-phosphate synthase DYB08_RS00355 PF00793 DAHP synthetase I family DYB08_RS00360 PF01925 Sulfite exporter TauE/SafE DYB08_RS00395 PF02684 Lipid-A-disaccharide synthetase DYB08_RS00405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_RS00410 PF00005 ABC transporter DYB08_RS00445 PF01230 HIT domain DYB08_RS00475 PF08241 Methyltransferase domain DYB08_RS00480 PF00561 alpha/beta hydrolase fold DYB08_RS00485 PF01053 Cys/Met metabolism PLP-dependent enzyme DYB08_RS00495 PF02575 YbaB/EbfC DNA-binding family DYB08_RS00500 PF02132 RecR protein DYB08_RS00500 PF13662 Toprim domain DYB08_RS00505 PF01612 3'-5' exonuclease DYB08_RS00505 PF00570 HRDC domain DYB08_RS00525 PF05166 YcgL domain DYB08_RS00535 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_RS00535 PF17862 AAA+ lid domain DYB08_RS00535 PF01434 Peptidase family M41 DYB08_RS00545 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS00550 PF05175 Methyltransferase small domain DYB08_RS00555 PF01264 Chorismate synthase DYB08_RS00560 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS00560 PF08448 PAS fold DYB08_RS00575 PF04055 Radical SAM superfamily DYB08_RS00580 PF00676 Dehydrogenase E1 component DYB08_RS00585 PF02779 Transketolase, pyrimidine binding domain DYB08_RS00585 PF02780 Transketolase, C-terminal domain DYB08_RS00590 PF00364 Biotin-requiring enzyme DYB08_RS00590 PF02817 e3 binding domain DYB08_RS00590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYB08_RS00595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_RS00595 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS00600 PF00106 short chain dehydrogenase DYB08_RS00605 PF00107 Zinc-binding dehydrogenase DYB08_RS00605 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS00610 PF01062 Bestrophin, RFP-TM, chloride channel DYB08_RS00615 PF00158 Sigma-54 interaction domain DYB08_RS00615 PF00072 Response regulator receiver domain DYB08_RS00615 PF02954 Bacterial regulatory protein, Fis family DYB08_RS00620 PF04273 Putative phosphatase (DUF442) DYB08_RS00620 PF00753 Metallo-beta-lactamase superfamily DYB08_RS00625 PF04273 Putative phosphatase (DUF442) DYB08_RS00625 PF00753 Metallo-beta-lactamase superfamily DYB08_RS00630 PF01925 Sulfite exporter TauE/SafE DYB08_RS00645 PF12833 Helix-turn-helix domain DYB08_RS00645 PF06445 GyrI-like small molecule binding domain DYB08_RS00650 PF01638 HxlR-like helix-turn-helix DYB08_RS00655 PF02525 Flavodoxin-like fold DYB08_RS00665 PF07702 UTRA domain DYB08_RS00665 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS00680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DYB08_RS00685 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS00690 PF00005 ABC transporter DYB08_RS00705 PF00083 Sugar (and other) transporter DYB08_RS00710 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS00710 PF00593 TonB dependent receptor DYB08_RS00715 PF10415 Fumarase C C-terminus DYB08_RS00715 PF00206 Lyase DYB08_RS00730 PF03466 LysR substrate binding domain DYB08_RS00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS00735 PF03466 LysR substrate binding domain DYB08_RS00735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS00740 PF00108 Thiolase, N-terminal domain DYB08_RS00740 PF02803 Thiolase, C-terminal domain DYB08_RS00745 PF02667 Short chain fatty acid transporter DYB08_RS00750 PF01144 Coenzyme A transferase DYB08_RS00755 PF01144 Coenzyme A transferase DYB08_RS00760 PF03466 LysR substrate binding domain DYB08_RS00760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS00790 PF12833 Helix-turn-helix domain DYB08_RS00790 PF06719 AraC-type transcriptional regulator N-terminus DYB08_RS00795 PF07690 Major Facilitator Superfamily DYB08_RS00800 PF01738 Dienelactone hydrolase family DYB08_RS00815 PF01613 Flavin reductase like domain DYB08_RS00825 PF12833 Helix-turn-helix domain DYB08_RS00825 PF14525 AraC-binding-like domain DYB08_RS00830 PF00970 Oxidoreductase FAD-binding domain DYB08_RS00830 PF00175 Oxidoreductase NAD-binding domain DYB08_RS00830 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS00835 PF00866 Ring hydroxylating beta subunit DYB08_RS00840 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_RS00840 PF00355 Rieske [2Fe-2S] domain DYB08_RS00845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS00845 PF03459 TOBE domain DYB08_RS00855 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS00860 PF00005 ABC transporter DYB08_RS00860 PF03459 TOBE domain DYB08_RS00865 PF00106 short chain dehydrogenase DYB08_RS00870 PF00550 Phosphopantetheine attachment site DYB08_RS00870 PF00857 Isochorismatase family DYB08_RS00880 PF00149 Calcineurin-like phosphoesterase DYB08_RS00885 PF02503 Polyphosphate kinase middle domain DYB08_RS00885 PF17941 Polyphosphate kinase C-terminal domain 1 DYB08_RS00885 PF13089 Polyphosphate kinase N-terminal domain DYB08_RS00885 PF13090 Polyphosphate kinase C-terminal domain 2 DYB08_RS00890 PF08042 PqqA family DYB08_RS00895 PF12706 Beta-lactamase superfamily domain DYB08_RS00900 PF03070 TENA/THI-4/PQQC family DYB08_RS00905 PF05402 Coenzyme PQQ synthesis protein D (PqqD) DYB08_RS00910 PF13186 Iron-sulfur cluster-binding domain DYB08_RS00910 PF04055 Radical SAM superfamily DYB08_RS00915 PF01244 Membrane dipeptidase (Peptidase family M19) DYB08_RS00935 PF13091 PLD-like domain DYB08_RS00950 PF00199 Catalase DYB08_RS00960 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS00960 PF00107 Zinc-binding dehydrogenase DYB08_RS00970 PF00419 Fimbrial protein DYB08_RS00975 PF13953 PapC C-terminal domain DYB08_RS00975 PF13954 PapC N-terminal domain DYB08_RS00975 PF00577 Outer membrane usher protein DYB08_RS00980 PF02753 Pili assembly chaperone PapD, C-terminal domain DYB08_RS00980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DYB08_RS00990 PF16970 Type-1 fimbrial protein, A DYB08_RS01010 PF01266 FAD dependent oxidoreductase DYB08_RS01030 PF01593 Flavin containing amine oxidoreductase DYB08_RS01035 PF00743 Flavin-binding monooxygenase-like DYB08_RS01040 PF12146 Serine aminopeptidase, S33 DYB08_RS01045 PF02321 Outer membrane efflux protein DYB08_RS01050 PF00873 AcrB/AcrD/AcrF family DYB08_RS01055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_RS01055 PF00529 HlyD membrane-fusion protein of T1SS DYB08_RS01075 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS01075 PF00072 Response regulator receiver domain DYB08_RS01080 PF16527 Two-component sensor protein CpxA, periplasmic domain DYB08_RS01080 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS01080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS01080 PF00672 HAMP domain DYB08_RS01090 PF12833 Helix-turn-helix domain DYB08_RS01090 PF02311 AraC-like ligand binding domain DYB08_RS01095 PF12146 Serine aminopeptidase, S33 DYB08_RS01150 PF13291 ACT domain DYB08_RS01150 PF02824 TGS domain DYB08_RS01150 PF04607 Region found in RelA / SpoT proteins DYB08_RS01160 PF01975 Survival protein SurE DYB08_RS01185 PF07690 Major Facilitator Superfamily DYB08_RS01190 PF13533 Biotin-lipoyl like DYB08_RS01195 PF01425 Amidase DYB08_RS01200 PF00196 Bacterial regulatory proteins, luxR family DYB08_RS01275 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYB08_RS01280 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYB08_RS01280 PF14572 Phosphoribosyl synthetase-associated domain DYB08_RS01300 PF00005 ABC transporter DYB08_RS01305 PF01032 FecCD transport family DYB08_RS01315 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS01315 PF00107 Zinc-binding dehydrogenase DYB08_RS01330 PF12833 Helix-turn-helix domain DYB08_RS01330 PF06719 AraC-type transcriptional regulator N-terminus DYB08_RS01335 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYB08_RS01335 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYB08_RS01340 PF07690 Major Facilitator Superfamily DYB08_RS01345 PF00920 Dehydratase family DYB08_RS01350 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS01350 PF07729 FCD domain DYB08_RS01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS01360 PF03466 LysR substrate binding domain DYB08_RS01365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYB08_RS01365 PF13378 Enolase C-terminal domain-like DYB08_RS01370 PF02426 Muconolactone delta-isomerase DYB08_RS01375 PF04444 Catechol dioxygenase N terminus DYB08_RS01375 PF00775 Dioxygenase DYB08_RS01380 PF01144 Coenzyme A transferase DYB08_RS01385 PF01144 Coenzyme A transferase DYB08_RS01390 PF02803 Thiolase, C-terminal domain DYB08_RS01390 PF00108 Thiolase, N-terminal domain DYB08_RS01395 PF12146 Serine aminopeptidase, S33 DYB08_RS01400 PF01804 Penicillin amidase DYB08_RS01405 PF00171 Aldehyde dehydrogenase family DYB08_RS01415 PF01179 Copper amine oxidase, enzyme domain DYB08_RS01415 PF07833 Copper amine oxidase N-terminal domain DYB08_RS01415 PF02728 Copper amine oxidase, N3 domain DYB08_RS01415 PF02727 Copper amine oxidase, N2 domain DYB08_RS01420 PF12833 Helix-turn-helix domain DYB08_RS01420 PF02311 AraC-like ligand binding domain DYB08_RS01425 PF01613 Flavin reductase like domain DYB08_RS01430 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS01430 PF00175 Oxidoreductase NAD-binding domain DYB08_RS01445 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_RS01445 PF00355 Rieske [2Fe-2S] domain DYB08_RS01460 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS01465 PF01425 Amidase DYB08_RS01475 PF07690 Major Facilitator Superfamily DYB08_RS01485 PF00106 short chain dehydrogenase DYB08_RS01500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS01500 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS01500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS01520 PF01614 Bacterial transcriptional regulator DYB08_RS01520 PF09339 IclR helix-turn-helix domain DYB08_RS01525 PF00753 Metallo-beta-lactamase superfamily DYB08_RS01535 PF04143 Sulphur transport DYB08_RS01545 PF13360 PQQ-like domain DYB08_RS01545 PF01011 PQQ enzyme repeat DYB08_RS01550 PF04966 Carbohydrate-selective porin, OprB family DYB08_RS01555 PF05048 Periplasmic copper-binding protein (NosD) DYB08_RS01560 PF01487 Type I 3-dehydroquinase DYB08_RS01565 PF00775 Dioxygenase DYB08_RS01570 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal DYB08_RS01570 PF00775 Dioxygenase DYB08_RS01575 PF02627 Carboxymuconolactone decarboxylase family DYB08_RS01580 PF07690 Major Facilitator Superfamily DYB08_RS01585 PF00561 alpha/beta hydrolase fold DYB08_RS01590 PF10397 Adenylosuccinate lyase C-terminus DYB08_RS01590 PF00206 Lyase DYB08_RS01595 PF02803 Thiolase, C-terminal domain DYB08_RS01595 PF00108 Thiolase, N-terminal domain DYB08_RS01600 PF01144 Coenzyme A transferase DYB08_RS01605 PF01144 Coenzyme A transferase DYB08_RS01610 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DYB08_RS01615 PF04977 Septum formation initiator DYB08_RS01620 PF04239 Protein of unknown function (DUF421) DYB08_RS01625 PF00113 Enolase, C-terminal TIM barrel domain DYB08_RS01625 PF03952 Enolase, N-terminal domain DYB08_RS01630 PF00793 DAHP synthetase I family DYB08_RS01635 PF00117 Glutamine amidotransferase class-I DYB08_RS01635 PF06418 CTP synthase N-terminus DYB08_RS01665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_RS01665 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS01680 PF00793 DAHP synthetase I family DYB08_RS01685 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DYB08_RS01690 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_RS01690 PF02861 Clp amino terminal domain, pathogenicity island component DYB08_RS01690 PF17871 AAA lid domain DYB08_RS01690 PF07724 AAA domain (Cdc48 subfamily) DYB08_RS01690 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_RS01695 PF02617 ATP-dependent Clp protease adaptor protein ClpS DYB08_RS01705 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYB08_RS01705 PF02774 Semialdehyde dehydrogenase, dimerisation domain DYB08_RS01720 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DYB08_RS01725 PF00585 C-terminal regulatory domain of Threonine dehydratase DYB08_RS01725 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS01730 PF02254 TrkA-N domain DYB08_RS01730 PF02080 TrkA-C domain DYB08_RS01735 PF02386 Cation transport protein DYB08_RS01740 PF02253 Phospholipase A1 DYB08_RS01745 PF00675 Insulinase (Peptidase family M16) DYB08_RS01745 PF05193 Peptidase M16 inactive domain DYB08_RS01745 PF08367 Peptidase M16C associated DYB08_RS01750 PF00593 TonB dependent receptor DYB08_RS01750 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS01755 PF00294 pfkB family carbohydrate kinase DYB08_RS01765 PF07290 Protein of unknown function (DUF1449) DYB08_RS01780 PF01654 Cytochrome bd terminal oxidase subunit I DYB08_RS01785 PF02322 Cytochrome bd terminal oxidase subunit II DYB08_RS01790 PF08173 Membrane bound YbgT-like protein DYB08_RS01805 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DYB08_RS01815 PF00448 SRP54-type protein, GTPase domain DYB08_RS01815 PF02881 SRP54-type protein, helical bundle domain DYB08_RS01840 PF00571 CBS domain DYB08_RS01840 PF00478 IMP dehydrogenase / GMP reductase domain DYB08_RS01845 PF00202 Aminotransferase class-III DYB08_RS01850 PF00462 Glutaredoxin DYB08_RS01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS01860 PF03466 LysR substrate binding domain DYB08_RS01865 PF00557 Metallopeptidase family M24 DYB08_RS01870 PF05525 Branched-chain amino acid transport protein DYB08_RS01895 PF05524 PEP-utilising enzyme, N-terminal DYB08_RS01895 PF02896 PEP-utilising enzyme, TIM barrel domain DYB08_RS01895 PF00381 PTS HPr component phosphorylation site DYB08_RS01895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DYB08_RS01895 PF00391 PEP-utilising enzyme, mobile domain DYB08_RS01900 PF00294 pfkB family carbohydrate kinase DYB08_RS01905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DYB08_RS01905 PF02378 Phosphotransferase system, EIIC DYB08_RS01925 PF00563 EAL domain DYB08_RS01925 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS01925 PF03707 Bacterial signalling protein N terminal repeat DYB08_RS01935 PF07995 Glucose / Sorbosone dehydrogenase DYB08_RS01940 PF02586 SOS response associated peptidase (SRAP) DYB08_RS01945 PF00916 Sulfate permease family DYB08_RS01945 PF01740 STAS domain DYB08_RS01950 PF00082 Subtilase family DYB08_RS01950 PF05922 Peptidase inhibitor I9 DYB08_RS01960 PF00324 Amino acid permease DYB08_RS01965 PF00266 Aminotransferase class-V DYB08_RS01970 PF01037 Lrp/AsnC ligand binding domain DYB08_RS01995 PF13419 Haloacid dehalogenase-like hydrolase DYB08_RS02000 PF01479 S4 domain DYB08_RS02005 PF00154 recA bacterial DNA recombination protein DYB08_RS02010 PF02631 RecX family DYB08_RS02025 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS02025 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DYB08_RS02030 PF07977 FabA-like domain DYB08_RS02035 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS02035 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DYB08_RS02045 PF01103 Surface antigen DYB08_RS02045 PF07244 Surface antigen variable number repeat DYB08_RS02050 PF02163 Peptidase family M50 DYB08_RS02050 PF17820 PDZ domain DYB08_RS02050 PF13180 PDZ domain DYB08_RS02055 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DYB08_RS02055 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DYB08_RS02055 PF13288 DXP reductoisomerase C-terminal domain DYB08_RS02065 PF01255 Putative undecaprenyl diphosphate synthase DYB08_RS02070 PF01765 Ribosome recycling factor DYB08_RS02075 PF00696 Amino acid kinase family DYB08_RS02080 PF18693 TRAM domain DYB08_RS02080 PF04055 Radical SAM superfamily DYB08_RS02080 PF00919 Uncharacterized protein family UPF0004 DYB08_RS02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS02090 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS02090 PF00989 PAS fold DYB08_RS02095 PF02954 Bacterial regulatory protein, Fis family DYB08_RS02095 PF00072 Response regulator receiver domain DYB08_RS02095 PF00158 Sigma-54 interaction domain DYB08_RS02100 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS02105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYB08_RS02105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYB08_RS02115 PF02542 YgbB family DYB08_RS02125 PF01266 FAD dependent oxidoreductase DYB08_RS02150 PF10415 Fumarase C C-terminus DYB08_RS02150 PF00206 Lyase DYB08_RS02155 PF16363 GDP-mannose 4,6 dehydratase DYB08_RS02160 PF02635 DsrE/DsrF-like family DYB08_RS02180 PF00892 EamA-like transporter family DYB08_RS02185 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS02185 PF00155 Aminotransferase class I and II DYB08_RS02190 PF01638 HxlR-like helix-turn-helix DYB08_RS02195 PF03453 MoeA N-terminal region (domain I and II) DYB08_RS02195 PF03454 MoeA C-terminal region (domain IV) DYB08_RS02195 PF00994 Probable molybdopterin binding domain DYB08_RS02200 PF01967 MoaC family DYB08_RS02200 PF00994 Probable molybdopterin binding domain DYB08_RS02205 PF02391 MoaE protein DYB08_RS02215 PF04055 Radical SAM superfamily DYB08_RS02215 PF06463 Molybdenum Cofactor Synthesis C DYB08_RS02220 PF01568 Molydopterin dinucleotide binding domain DYB08_RS02220 PF00384 Molybdopterin oxidoreductase DYB08_RS02220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DYB08_RS02225 PF12804 MobA-like NTP transferase domain DYB08_RS02230 PF01568 Molydopterin dinucleotide binding domain DYB08_RS02230 PF00384 Molybdopterin oxidoreductase DYB08_RS02230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DYB08_RS02230 PF04324 BFD-like [2Fe-2S] binding domain DYB08_RS02235 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS02235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYB08_RS02235 PF18267 Rubredoxin NAD+ reductase C-terminal domain DYB08_RS02235 PF04324 BFD-like [2Fe-2S] binding domain DYB08_RS02235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYB08_RS02240 PF04324 BFD-like [2Fe-2S] binding domain DYB08_RS02240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYB08_RS02240 PF13806 Rieske-like [2Fe-2S] domain DYB08_RS02240 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS02240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYB08_RS02240 PF18267 Rubredoxin NAD+ reductase C-terminal domain DYB08_RS02250 PF00072 Response regulator receiver domain DYB08_RS02250 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS02255 PF00005 ABC transporter DYB08_RS02265 PF11799 impB/mucB/samB family C-terminal domain DYB08_RS02265 PF00817 impB/mucB/samB family DYB08_RS02265 PF13438 Domain of unknown function (DUF4113) DYB08_RS02270 PF01220 Dehydroquinase class II DYB08_RS02275 PF00364 Biotin-requiring enzyme DYB08_RS02280 PF00289 Biotin carboxylase, N-terminal domain DYB08_RS02280 PF02785 Biotin carboxylase C-terminal domain DYB08_RS02280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_RS02290 PF12832 MFS_1 like family DYB08_RS02630 PF01645 Conserved region in glutamate synthase DYB08_RS02645 PF01565 FAD binding domain DYB08_RS02645 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DYB08_RS02650 PF01451 Low molecular weight phosphotyrosine protein phosphatase DYB08_RS02660 PF00465 Iron-containing alcohol dehydrogenase DYB08_RS02665 PF03061 Thioesterase superfamily DYB08_RS02670 PF04185 Phosphoesterase family DYB08_RS02670 PF05506 Domain of unknown function (DUF756) DYB08_RS02675 PF12169 DNA polymerase III subunits gamma and tau domain III DYB08_RS02675 PF12170 DNA polymerase III tau subunit V interacting with alpha DYB08_RS02675 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DYB08_RS02680 PF07690 Major Facilitator Superfamily DYB08_RS02690 PF00144 Beta-lactamase DYB08_RS02695 PF01575 MaoC like domain DYB08_RS02705 PF00108 Thiolase, N-terminal domain DYB08_RS02705 PF02803 Thiolase, C-terminal domain DYB08_RS02715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS02715 PF03466 LysR substrate binding domain DYB08_RS02720 PF00923 Transaldolase/Fructose-6-phosphate aldolase DYB08_RS02725 PF01810 LysE type translocator DYB08_RS02730 PF01037 Lrp/AsnC ligand binding domain DYB08_RS02735 PF03594 Benzoate membrane transport protein DYB08_RS02740 PF02308 MgtC family DYB08_RS02745 PF00689 Cation transporting ATPase, C-terminus DYB08_RS02745 PF00690 Cation transporter/ATPase, N-terminus DYB08_RS02760 PF00665 Integrase core domain DYB08_RS02780 PF00809 Pterin binding enzyme DYB08_RS02785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_RS02785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_RS02785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_RS02785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_RS02800 PF00665 Integrase core domain DYB08_RS02840 PF00582 Universal stress protein family DYB08_RS02845 PF00916 Sulfate permease family DYB08_RS02845 PF01740 STAS domain DYB08_RS02855 PF07690 Major Facilitator Superfamily DYB08_RS02860 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS02860 PF02909 Tetracyclin repressor-like, C-terminal domain DYB08_RS02885 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DYB08_RS02890 PF01636 Phosphotransferase enzyme family DYB08_RS02925 PF00582 Universal stress protein family DYB08_RS02930 PF12848 ABC transporter DYB08_RS02930 PF00005 ABC transporter DYB08_RS02950 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS02950 PF00593 TonB dependent receptor DYB08_RS02980 PF00924 Mechanosensitive ion channel DYB08_RS02985 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS02985 PF00593 TonB dependent receptor DYB08_RS02990 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS03005 PF01037 Lrp/AsnC ligand binding domain DYB08_RS03010 PF01817 Chorismate mutase type II DYB08_RS03020 PF00106 short chain dehydrogenase DYB08_RS03030 PF11940 Domain of unknown function (DUF3458) Ig-like fold DYB08_RS03030 PF01433 Peptidase family M1 domain DYB08_RS03030 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DYB08_RS03045 PF02110 Hydroxyethylthiazole kinase family DYB08_RS03050 PF06445 GyrI-like small molecule binding domain DYB08_RS03060 PF05970 PIF1-like helicase DYB08_RS03060 PF14493 Helix-turn-helix domain DYB08_RS03065 PF00465 Iron-containing alcohol dehydrogenase DYB08_RS03080 PF00171 Aldehyde dehydrogenase family DYB08_RS03085 PF13520 Amino acid permease DYB08_RS03090 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DYB08_RS03095 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DYB08_RS03100 PF02540 NAD synthase DYB08_RS03100 PF00958 GMP synthase C terminal domain DYB08_RS03100 PF00117 Glutamine amidotransferase class-I DYB08_RS03105 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DYB08_RS03105 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYB08_RS03110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYB08_RS03115 PF00149 Calcineurin-like phosphoesterase DYB08_RS03125 PF00881 Nitroreductase family DYB08_RS03135 PF17209 Hfq protein DYB08_RS03145 PF01119 DNA mismatch repair protein, C-terminal domain DYB08_RS03145 PF08676 MutL C terminal dimerisation domain DYB08_RS03150 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DYB08_RS03155 PF01479 S4 domain DYB08_RS03155 PF00849 RNA pseudouridylate synthase DYB08_RS03170 PF01479 S4 domain DYB08_RS03170 PF00849 RNA pseudouridylate synthase DYB08_RS03180 PF04284 Protein of unknown function (DUF441) DYB08_RS03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS03185 PF03466 LysR substrate binding domain DYB08_RS03200 PF07690 Major Facilitator Superfamily DYB08_RS03205 PF00520 Ion transport protein DYB08_RS03205 PF00027 Cyclic nucleotide-binding domain DYB08_RS03215 PF06434 Aconitate hydratase 2 N-terminus DYB08_RS03215 PF00330 Aconitase family (aconitate hydratase) DYB08_RS03215 PF11791 Aconitate B N-terminal domain DYB08_RS03235 PF17243 POTRA domain TamA domain 1 DYB08_RS03235 PF01103 Surface antigen DYB08_RS03235 PF07244 Surface antigen variable number repeat DYB08_RS03240 PF07690 Major Facilitator Superfamily DYB08_RS03245 PF03232 Ubiquinone biosynthesis protein COQ7 DYB08_RS03260 PF00120 Glutamine synthetase, catalytic domain DYB08_RS03265 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS03265 PF00072 Response regulator receiver domain DYB08_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS03270 PF02702 Osmosensitive K+ channel His kinase sensor domain DYB08_RS03270 PF13493 Domain of unknown function (DUF4118) DYB08_RS03270 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS03275 PF02669 K+-transporting ATPase, c chain DYB08_RS03285 PF03814 Potassium-transporting ATPase A subunit DYB08_RS03300 PF03109 ABC1 family DYB08_RS03305 PF00899 ThiF family DYB08_RS03310 PF01613 Flavin reductase like domain DYB08_RS03315 PF00501 AMP-binding enzyme DYB08_RS03315 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS03320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS03320 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS03320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS03325 PF00106 short chain dehydrogenase DYB08_RS03330 PF12833 Helix-turn-helix domain DYB08_RS03335 PF09084 NMT1/THI5 like DYB08_RS03340 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS03345 PF17827 PrmC N-terminal domain DYB08_RS03345 PF13847 Methyltransferase domain DYB08_RS03350 PF00472 RF-1 domain DYB08_RS03350 PF03462 PCRF domain DYB08_RS03360 PF03466 LysR substrate binding domain DYB08_RS03360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS03380 PF00296 Luciferase-like monooxygenase DYB08_RS03390 PF13994 PgaD-like protein DYB08_RS03395 PF00535 Glycosyl transferase family 2 DYB08_RS03400 PF01522 Polysaccharide deacetylase DYB08_RS03400 PF14883 Hypothetical glycosyl hydrolase family 13 DYB08_RS03410 PF03618 Kinase/pyrophosphorylase DYB08_RS03415 PF02896 PEP-utilising enzyme, TIM barrel domain DYB08_RS03415 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DYB08_RS03415 PF00391 PEP-utilising enzyme, mobile domain DYB08_RS03425 PF06481 COX Aromatic Rich Motif DYB08_RS03425 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DYB08_RS03430 PF00115 Cytochrome C and Quinol oxidase polypeptide I DYB08_RS03435 PF00510 Cytochrome c oxidase subunit III DYB08_RS03440 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DYB08_RS03445 PF01040 UbiA prenyltransferase family DYB08_RS03450 PF01250 Ribosomal protein S6 DYB08_RS03455 PF01084 Ribosomal protein S18 DYB08_RS03460 PF03948 Ribosomal protein L9, C-terminal domain DYB08_RS03460 PF01281 Ribosomal protein L9, N-terminal domain DYB08_RS03465 PF00772 DnaB-like helicase N terminal domain DYB08_RS03465 PF03796 DnaB-like helicase C terminal domain DYB08_RS03470 PF00842 Alanine racemase, C-terminal domain DYB08_RS03470 PF01168 Alanine racemase, N-terminal domain DYB08_RS03480 PF01841 Transglutaminase-like superfamily DYB08_RS03480 PF08379 Bacterial transglutaminase-like N-terminal region DYB08_RS03490 PF14403 Circularly permuted ATP-grasp type 2 DYB08_RS03500 PF13932 GidA associated domain DYB08_RS03500 PF01134 Glucose inhibited division protein A DYB08_RS03520 PF02954 Bacterial regulatory protein, Fis family DYB08_RS03525 PF02142 MGS-like domain DYB08_RS03525 PF01808 AICARFT/IMPCHase bienzyme DYB08_RS03530 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DYB08_RS03530 PF02843 Phosphoribosylglycinamide synthetase, C domain DYB08_RS03530 PF02844 Phosphoribosylglycinamide synthetase, N domain DYB08_RS03535 PF03180 NLPA lipoprotein DYB08_RS03540 PF09383 NIL domain DYB08_RS03540 PF00005 ABC transporter DYB08_RS03545 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS03550 PF00753 Metallo-beta-lactamase superfamily DYB08_RS03550 PF16123 Hydroxyacylglutathione hydrolase C-terminus DYB08_RS03560 PF00375 Sodium:dicarboxylate symporter family DYB08_RS03580 PF07995 Glucose / Sorbosone dehydrogenase DYB08_RS03585 PF00892 EamA-like transporter family DYB08_RS03590 PF01177 Asp/Glu/Hydantoin racemase DYB08_RS03600 PF02470 MlaD protein DYB08_RS03605 PF04403 Paraquat-inducible protein A DYB08_RS03615 PF02080 TrkA-C domain DYB08_RS03615 PF06826 Predicted Permease Membrane Region DYB08_RS03620 PF00155 Aminotransferase class I and II DYB08_RS03645 PF00083 Sugar (and other) transporter DYB08_RS03645 PF08946 Osmosensory transporter coiled coil DYB08_RS03700 PF07729 FCD domain DYB08_RS03700 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS03710 PF03616 Sodium/glutamate symporter DYB08_RS03715 PF00561 alpha/beta hydrolase fold DYB08_RS03745 PF04076 Bacterial OB fold (BOF) protein DYB08_RS03775 PF00324 Amino acid permease DYB08_RS03780 PF00171 Aldehyde dehydrogenase family DYB08_RS03785 PF00202 Aminotransferase class-III DYB08_RS03790 PF03466 LysR substrate binding domain DYB08_RS03790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS03815 PF00069 Protein kinase domain DYB08_RS03835 PF00814 Glycoprotease family DYB08_RS03840 PF01165 Ribosomal protein S21 DYB08_RS03845 PF09424 Yqey-like protein DYB08_RS03850 PF01435 Peptidase family M48 DYB08_RS03855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYB08_RS03855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYB08_RS03870 PF00156 Phosphoribosyl transferase domain DYB08_RS03875 PF02674 Colicin V production protein DYB08_RS03880 PF01180 Dihydroorotate dehydrogenase DYB08_RS03900 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DYB08_RS03900 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DYB08_RS03905 PF00881 Nitroreductase family DYB08_RS03915 PF00271 Helicase conserved C-terminal domain DYB08_RS03915 PF00270 DEAD/DEAH box helicase DYB08_RS03920 PF00313 'Cold-shock' DNA-binding domain DYB08_RS03930 PF04545 Sigma-70, region 4 DYB08_RS03930 PF00140 Sigma-70 factor, region 1.2 DYB08_RS03930 PF04542 Sigma-70 region 2 DYB08_RS03935 PF04241 Protein of unknown function (DUF423) DYB08_RS03945 PF05690 Thiazole biosynthesis protein ThiG DYB08_RS03955 PF03883 Peroxide stress protein YaaA DYB08_RS03965 PF12706 Beta-lactamase superfamily domain DYB08_RS03970 PF01546 Peptidase family M20/M25/M40 DYB08_RS03970 PF07687 Peptidase dimerisation domain DYB08_RS03980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYB08_RS03985 PF01817 Chorismate mutase type II DYB08_RS03985 PF01842 ACT domain DYB08_RS03985 PF00800 Prephenate dehydratase DYB08_RS03990 PF00756 Putative esterase DYB08_RS03995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS03995 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS03995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS04000 PF00375 Sodium:dicarboxylate symporter family DYB08_RS04010 PF00591 Glycosyl transferase family, a/b domain DYB08_RS04010 PF02885 Glycosyl transferase family, helical bundle domain DYB08_RS04015 PF07023 Protein of unknown function (DUF1315) DYB08_RS04020 PF01513 ATP-NAD kinase DYB08_RS04025 PF14814 Bifunctional transglycosylase second domain DYB08_RS04025 PF00905 Penicillin binding protein transpeptidase domain DYB08_RS04025 PF00912 Transglycosylase DYB08_RS04035 PF00293 NUDIX domain DYB08_RS04045 PF08521 Two-component sensor kinase N-terminal DYB08_RS04045 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS04045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS04050 PF00072 Response regulator receiver domain DYB08_RS04050 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS04065 PF00437 Type II/IV secretion system protein DYB08_RS04065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DYB08_RS04075 PF18389 TrmO C-terminal domain DYB08_RS04075 PF01980 tRNA-methyltransferase O DYB08_RS04080 PF00970 Oxidoreductase FAD-binding domain DYB08_RS04080 PF00175 Oxidoreductase NAD-binding domain DYB08_RS04085 PF02567 Phenazine biosynthesis-like protein DYB08_RS04090 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS04090 PF00155 Aminotransferase class I and II DYB08_RS04095 PF16325 Peptidase family U32 C-terminal domain DYB08_RS04095 PF01136 Peptidase family U32 DYB08_RS04100 PF00037 4Fe-4S binding domain DYB08_RS04105 PF00893 Small Multidrug Resistance protein DYB08_RS04110 PF00005 ABC transporter DYB08_RS04115 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS04120 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS04125 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_RS04145 PF13533 Biotin-lipoyl like DYB08_RS04150 PF00873 AcrB/AcrD/AcrF family DYB08_RS04155 PF02321 Outer membrane efflux protein DYB08_RS04160 PF00464 Serine hydroxymethyltransferase DYB08_RS04200 PF00005 ABC transporter DYB08_RS04205 PF01061 ABC-2 type transporter DYB08_RS04210 PF14489 QueF-like protein DYB08_RS04210 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DYB08_RS04220 PF01098 Cell cycle protein DYB08_RS04225 PF13406 Transglycosylase SLT domain DYB08_RS04230 PF05036 Sporulation related domain DYB08_RS04230 PF03330 Lytic transglycolase DYB08_RS04250 PF12833 Helix-turn-helix domain DYB08_RS04260 PF00889 Elongation factor TS DYB08_RS04265 PF00318 Ribosomal protein S2 DYB08_RS04270 PF00557 Metallopeptidase family M24 DYB08_RS04280 PF07690 Major Facilitator Superfamily DYB08_RS04290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_RS04290 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS04295 PF04055 Radical SAM superfamily DYB08_RS04300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS04300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS04300 PF09317 Domain of unknown function (DUF1974) DYB08_RS04315 PF05221 S-adenosyl-L-homocysteine hydrolase DYB08_RS04315 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DYB08_RS04320 PF02219 Methylenetetrahydrofolate reductase DYB08_RS04325 PF04452 RNA methyltransferase DYB08_RS04330 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS04330 PF03707 Bacterial signalling protein N terminal repeat DYB08_RS04330 PF00563 EAL domain DYB08_RS04335 PF03949 Malic enzyme, NAD binding domain DYB08_RS04335 PF00390 Malic enzyme, N-terminal domain DYB08_RS04335 PF01515 Phosphate acetyl/butaryl transferase DYB08_RS04340 PF12627 Probable RNA and SrmB- binding site of polymerase A DYB08_RS04340 PF01743 Poly A polymerase head domain DYB08_RS04345 PF13180 PDZ domain DYB08_RS04350 PF01784 NIF3 (NGG1p interacting factor 3) DYB08_RS04355 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DYB08_RS04355 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DYB08_RS04390 PF01040 UbiA prenyltransferase family DYB08_RS04395 PF04345 Chorismate lyase DYB08_RS04400 PF03951 Glutamine synthetase, beta-Grasp domain DYB08_RS04400 PF00120 Glutamine synthetase, catalytic domain DYB08_RS04405 PF00854 POT family DYB08_RS04415 PF00117 Glutamine amidotransferase class-I DYB08_RS04420 PF01433 Peptidase family M1 domain DYB08_RS04420 PF11838 ERAP1-like C-terminal domain DYB08_RS04425 PF00593 TonB dependent receptor DYB08_RS04425 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS04435 PF02885 Glycosyl transferase family, helical bundle domain DYB08_RS04435 PF00591 Glycosyl transferase family, a/b domain DYB08_RS04440 PF00218 Indole-3-glycerol phosphate synthase DYB08_RS04455 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DYB08_RS04455 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DYB08_RS04460 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS04460 PF01799 [2Fe-2S] binding domain DYB08_RS04465 PF01227 GTP cyclohydrolase I DYB08_RS04475 PF00144 Beta-lactamase DYB08_RS04490 PF05675 Protein of unknown function (DUF817) DYB08_RS04495 PF01208 Uroporphyrinogen decarboxylase (URO-D) DYB08_RS04505 PF00425 chorismate binding enzyme DYB08_RS04515 PF00975 Thioesterase domain DYB08_RS04520 PF00005 ABC transporter DYB08_RS04525 PF00005 ABC transporter DYB08_RS04535 PF00282 Pyridoxal-dependent decarboxylase conserved domain DYB08_RS04540 PF00857 Isochorismatase family DYB08_RS04540 PF00550 Phosphopantetheine attachment site DYB08_RS04545 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS04545 PF00501 AMP-binding enzyme DYB08_RS04550 PF00668 Condensation domain DYB08_RS04550 PF00501 AMP-binding enzyme DYB08_RS04550 PF00550 Phosphopantetheine attachment site DYB08_RS04555 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) DYB08_RS04560 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS04560 PF00593 TonB dependent receptor DYB08_RS04565 PF01497 Periplasmic binding protein DYB08_RS04570 PF00005 ABC transporter DYB08_RS04575 PF01032 FecCD transport family DYB08_RS04580 PF01032 FecCD transport family DYB08_RS04585 PF00550 Phosphopantetheine attachment site DYB08_RS04585 PF00668 Condensation domain DYB08_RS04585 PF00501 AMP-binding enzyme DYB08_RS04585 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS04585 PF00975 Thioesterase domain DYB08_RS04590 PF00668 Condensation domain DYB08_RS04590 PF00550 Phosphopantetheine attachment site DYB08_RS04590 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS04590 PF00501 AMP-binding enzyme DYB08_RS04600 PF08348 YheO-like PAS domain DYB08_RS04600 PF13309 HTH domain DYB08_RS04610 PF17954 Quercetinase C-terminal cupin domain DYB08_RS04610 PF02678 Pirin DYB08_RS04630 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS04635 PF00698 Acyl transferase domain DYB08_RS04635 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS04635 PF08990 Erythronolide synthase docking DYB08_RS04635 PF09277 Erythronolide synthase, docking DYB08_RS04635 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_RS04635 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_RS04635 PF08659 KR domain DYB08_RS04635 PF00550 Phosphopantetheine attachment site DYB08_RS04635 PF14765 Polyketide synthase dehydratase DYB08_RS04635 PF16197 Ketoacyl-synthetase C-terminal extension DYB08_RS04640 PF13378 Enolase C-terminal domain-like DYB08_RS04640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DYB08_RS04645 PF00083 Sugar (and other) transporter DYB08_RS04650 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DYB08_RS04660 PF00892 EamA-like transporter family DYB08_RS04680 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DYB08_RS04680 PF01266 FAD dependent oxidoreductase DYB08_RS04685 PF18113 Rubredoxin binding C-terminal domain DYB08_RS04685 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS04690 PF00171 Aldehyde dehydrogenase family DYB08_RS04695 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_RS04695 PF00355 Rieske [2Fe-2S] domain DYB08_RS04700 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_RS04705 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_RS04715 PF03466 LysR substrate binding domain DYB08_RS04715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS04720 PF00324 Amino acid permease DYB08_RS04725 PF00171 Aldehyde dehydrogenase family DYB08_RS04740 PF17853 GGDEF-like domain DYB08_RS04740 PF06018 CodY GAF-like domain DYB08_RS04740 PF13556 PucR C-terminal helix-turn-helix domain DYB08_RS04780 PF04328 Selenoprotein, putative DYB08_RS04785 PF13722 5TM C-terminal transporter carbon starvation CstA DYB08_RS04785 PF02554 Carbon starvation protein CstA DYB08_RS04790 PF09285 Elongation factor P, C-terminal DYB08_RS04790 PF01132 Elongation factor P (EF-P) OB domain DYB08_RS04790 PF08207 Elongation factor P (EF-P) KOW-like domain DYB08_RS04795 PF04055 Radical SAM superfamily DYB08_RS04810 PF01197 Ribosomal protein L31 DYB08_RS04815 PF13593 SBF-like CPA transporter family (DUF4137) DYB08_RS04820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_RS04825 PF07690 Major Facilitator Superfamily DYB08_RS04830 PF13654 AAA domain DYB08_RS04830 PF05362 Lon protease (S16) C-terminal proteolytic domain DYB08_RS04835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS04835 PF03466 LysR substrate binding domain DYB08_RS04840 PF01551 Peptidase family M23 DYB08_RS04840 PF01476 LysM domain DYB08_RS04845 PF01975 Survival protein SurE DYB08_RS04860 PF07943 Penicillin-binding protein 5, C-terminal domain DYB08_RS04860 PF00768 D-alanyl-D-alanine carboxypeptidase DYB08_RS04865 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS04870 PF00293 NUDIX domain DYB08_RS04870 PF13344 Haloacid dehalogenase-like hydrolase DYB08_RS04880 PF04356 Protein of unknown function (DUF489) DYB08_RS04885 PF08328 Adenylosuccinate lyase C-terminal DYB08_RS04885 PF00206 Lyase DYB08_RS04900 PF08496 Peptidase family S49 N-terminal DYB08_RS04900 PF01343 Peptidase family S49 DYB08_RS04905 PF00005 ABC transporter DYB08_RS04910 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS04915 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS04920 PF12849 PBP superfamily domain DYB08_RS04925 PF00324 Amino acid permease DYB08_RS04930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYB08_RS04930 PF00205 Thiamine pyrophosphate enzyme, central domain DYB08_RS04930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYB08_RS04935 PF01037 Lrp/AsnC ligand binding domain DYB08_RS04940 PF00171 Aldehyde dehydrogenase family DYB08_RS04945 PF00282 Pyridoxal-dependent decarboxylase conserved domain DYB08_RS04950 PF00202 Aminotransferase class-III DYB08_RS04960 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS04960 PF17754 MftR C-terminal domain DYB08_RS04970 PF00487 Fatty acid desaturase DYB08_RS04975 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS04975 PF00175 Oxidoreductase NAD-binding domain DYB08_RS04975 PF00970 Oxidoreductase FAD-binding domain DYB08_RS04980 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS04990 PF00271 Helicase conserved C-terminal domain DYB08_RS04990 PF12137 RNA polymerase recycling family C-terminal DYB08_RS04990 PF00176 SNF2 family N-terminal domain DYB08_RS04990 PF18339 RapA N-terminal Tudor like domain 1 DYB08_RS04990 PF18337 RapA N-terminal Tudor like domain DYB08_RS04995 PF00849 RNA pseudouridylate synthase DYB08_RS05005 PF00202 Aminotransferase class-III DYB08_RS05010 PF02581 Thiamine monophosphate synthase DYB08_RS05035 PF05193 Peptidase M16 inactive domain DYB08_RS05035 PF00675 Insulinase (Peptidase family M16) DYB08_RS05040 PF02567 Phenazine biosynthesis-like protein DYB08_RS05045 PF00375 Sodium:dicarboxylate symporter family DYB08_RS05050 PF03466 LysR substrate binding domain DYB08_RS05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS05055 PF06779 Uncharacterised MFS-type transporter YbfB DYB08_RS05075 PF00180 Isocitrate/isopropylmalate dehydrogenase DYB08_RS05080 PF00849 RNA pseudouridylate synthase DYB08_RS05085 PF03971 Monomeric isocitrate dehydrogenase DYB08_RS05095 PF00768 D-alanyl-D-alanine carboxypeptidase DYB08_RS05095 PF07943 Penicillin-binding protein 5, C-terminal domain DYB08_RS05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS05105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_RS05110 PF00875 DNA photolyase DYB08_RS05110 PF03441 FAD binding domain of DNA photolyase DYB08_RS05140 PF02350 UDP-N-acetylglucosamine 2-epimerase DYB08_RS05155 PF03060 Nitronate monooxygenase DYB08_RS05160 PF01207 Dihydrouridine synthase (Dus) DYB08_RS05165 PF07759 Protein of unknown function (DUF1615) DYB08_RS05175 PF01472 PUA domain DYB08_RS05175 PF00696 Amino acid kinase family DYB08_RS05180 PF01926 50S ribosome-binding GTPase DYB08_RS05180 PF01018 GTP1/OBG DYB08_RS05195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DYB08_RS05195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DYB08_RS05200 PF00892 EamA-like transporter family DYB08_RS05210 PF00271 Helicase conserved C-terminal domain DYB08_RS05210 PF04851 Type III restriction enzyme, res subunit DYB08_RS05210 PF02151 UvrB/uvrC motif DYB08_RS05210 PF17757 UvrB interaction domain DYB08_RS05210 PF12344 Ultra-violet resistance protein B DYB08_RS05220 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS05220 PF17151 Periplasmic sensor domain DYB08_RS05230 PF00155 Aminotransferase class I and II DYB08_RS05260 PF00106 short chain dehydrogenase DYB08_RS05265 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DYB08_RS05270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DYB08_RS05275 PF02565 Recombination protein O C terminal DYB08_RS05275 PF11967 Recombination protein O N terminal DYB08_RS05285 PF01926 50S ribosome-binding GTPase DYB08_RS05285 PF07650 KH domain DYB08_RS05290 PF14622 Ribonuclease-III-like DYB08_RS05290 PF00035 Double-stranded RNA binding motif DYB08_RS05300 PF10502 Signal peptidase, peptidase S26 DYB08_RS05305 PF03144 Elongation factor Tu domain 2 DYB08_RS05305 PF06421 GTP-binding protein LepA C-terminus DYB08_RS05305 PF00679 Elongation factor G C-terminus DYB08_RS05305 PF00009 Elongation factor Tu GTP binding domain DYB08_RS05315 PF13180 PDZ domain DYB08_RS05320 PF02910 Fumarate reductase flavoprotein C-term DYB08_RS05320 PF00890 FAD binding domain DYB08_RS05330 PF02223 Thymidylate kinase DYB08_RS05335 PF02618 YceG-like family DYB08_RS05340 PF01063 Amino-transferase class IV DYB08_RS05355 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS05360 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS05365 PF00005 ABC transporter DYB08_RS05365 PF12857 TOBE-like domain DYB08_RS05370 PF03466 LysR substrate binding domain DYB08_RS05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS05380 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DYB08_RS05380 PF14602 Hexapeptide repeat of succinyl-transferase DYB08_RS05380 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS05390 PF06508 Queuosine biosynthesis protein QueC DYB08_RS05405 PF00578 AhpC/TSA family DYB08_RS05415 PF01467 Cytidylyltransferase-like DYB08_RS05415 PF00293 NUDIX domain DYB08_RS05420 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS05425 PF01784 NIF3 (NGG1p interacting factor 3) DYB08_RS05430 PF07690 Major Facilitator Superfamily DYB08_RS05435 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DYB08_RS05435 PF02769 AIR synthase related protein, C-terminal domain DYB08_RS05435 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DYB08_RS05445 PF01966 HD domain DYB08_RS05450 PF07499 RuvA, C-terminal domain DYB08_RS05450 PF01330 RuvA N terminal domain DYB08_RS05455 PF05491 RuvB C-terminal winged helix domain DYB08_RS05455 PF17864 RuvB AAA lid domain DYB08_RS05455 PF05496 Holliday junction DNA helicase RuvB P-loop domain DYB08_RS05460 PF01546 Peptidase family M20/M25/M40 DYB08_RS05460 PF07687 Peptidase dimerisation domain DYB08_RS05465 PF03061 Thioesterase superfamily DYB08_RS05470 PF01618 MotA/TolQ/ExbB proton channel family DYB08_RS05475 PF02472 Biopolymer transport protein ExbD/TolR DYB08_RS05485 PF07676 WD40-like Beta Propeller Repeat DYB08_RS05485 PF04052 TolB amino-terminal domain DYB08_RS05490 PF00691 OmpA family DYB08_RS05500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DYB08_RS05505 PF00588 SpoU rRNA Methylase family DYB08_RS05505 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYB08_RS05535 PF11638 DnaA N-terminal domain DYB08_RS05535 PF08299 Bacterial dnaA protein helix-turn-helix DYB08_RS05535 PF00308 Bacterial dnaA protein DYB08_RS05540 PF01594 AI-2E family transporter DYB08_RS05545 PF02769 AIR synthase related protein, C-terminal domain DYB08_RS05545 PF00586 AIR synthase related protein, N-terminal domain DYB08_RS05550 PF00551 Formyl transferase DYB08_RS05555 PF12697 Alpha/beta hydrolase family DYB08_RS05560 PF06965 Na+/H+ antiporter 1 DYB08_RS05560 PF01343 Peptidase family S49 DYB08_RS05585 PF00005 ABC transporter DYB08_RS05590 PF12704 MacB-like periplasmic core domain DYB08_RS05590 PF02687 FtsX-like permease family DYB08_RS05600 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DYB08_RS05610 PF00266 Aminotransferase class-V DYB08_RS05625 PF13533 Biotin-lipoyl like DYB08_RS05645 PF00535 Glycosyl transferase family 2 DYB08_RS05660 PF03989 DNA gyrase C-terminal domain, beta-propeller DYB08_RS05660 PF00521 DNA gyrase/topoisomerase IV, subunit A DYB08_RS05665 PF00766 Electron transfer flavoprotein FAD-binding domain DYB08_RS05665 PF01012 Electron transfer flavoprotein domain DYB08_RS05670 PF01012 Electron transfer flavoprotein domain DYB08_RS05675 PF00589 Phage integrase family DYB08_RS05675 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_RS05680 PF01810 LysE type translocator DYB08_RS05685 PF01678 Diaminopimelate epimerase DYB08_RS05690 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DYB08_RS05690 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DYB08_RS05700 PF00324 Amino acid permease DYB08_RS05705 PF18073 Rubredoxin metal binding domain DYB08_RS05715 PF00152 tRNA synthetases class II (D, K and N) DYB08_RS05720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYB08_RS05720 PF11890 Domain of unknown function (DUF3410) DYB08_RS05720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYB08_RS05725 PF06803 Protein of unknown function (DUF1232) DYB08_RS05730 PF02634 FdhD/NarQ family DYB08_RS05735 PF00384 Molybdopterin oxidoreductase DYB08_RS05740 PF02595 Glycerate kinase family DYB08_RS05755 PF00881 Nitroreductase family DYB08_RS05780 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS05780 PF00501 AMP-binding enzyme DYB08_RS05780 PF00668 Condensation domain DYB08_RS05780 PF00550 Phosphopantetheine attachment site DYB08_RS05780 PF00975 Thioesterase domain DYB08_RS05795 PF03449 Transcription elongation factor, N-terminal DYB08_RS05795 PF01272 Transcription elongation factor, GreA/GreB, C-term DYB08_RS05800 PF01464 Transglycosylase SLT domain DYB08_RS05800 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_RS05810 PF01171 PP-loop family DYB08_RS05825 PF01464 Transglycosylase SLT domain DYB08_RS05830 PF01435 Peptidase family M48 DYB08_RS05840 PF00873 AcrB/AcrD/AcrF family DYB08_RS05845 PF03009 Glycerophosphoryl diester phosphodiesterase family DYB08_RS05850 PF00753 Metallo-beta-lactamase superfamily DYB08_RS05855 PF01219 Prokaryotic diacylglycerol kinase DYB08_RS05860 PF00118 TCP-1/cpn60 chaperonin family DYB08_RS05865 PF00166 Chaperonin 10 Kd subunit DYB08_RS05875 PF00149 Calcineurin-like phosphoesterase DYB08_RS05880 PF00781 Diacylglycerol kinase catalytic domain DYB08_RS05885 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DYB08_RS05885 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DYB08_RS05890 PF01266 FAD dependent oxidoreductase DYB08_RS05890 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DYB08_RS05895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DYB08_RS05895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DYB08_RS05900 PF00083 Sugar (and other) transporter DYB08_RS05915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DYB08_RS05915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DYB08_RS05930 PF09423 PhoD-like phosphatase DYB08_RS05930 PF16655 PhoD-like phosphatase, N-terminal domain DYB08_RS05955 PF01434 Peptidase family M41 DYB08_RS05955 PF06480 FtsH Extracellular DYB08_RS05955 PF17862 AAA+ lid domain DYB08_RS05955 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_RS05960 PF01728 FtsJ-like methyltransferase DYB08_RS05965 PF01985 CRS1 / YhbY (CRM) domain DYB08_RS05980 PF00117 Glutamine amidotransferase class-I DYB08_RS05980 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DYB08_RS05985 PF02142 MGS-like domain DYB08_RS05985 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DYB08_RS05985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_RS05990 PF03449 Transcription elongation factor, N-terminal DYB08_RS05990 PF01272 Transcription elongation factor, GreA/GreB, C-term DYB08_RS05995 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS06000 PF00582 Universal stress protein family DYB08_RS06005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYB08_RS06015 PF09587 Bacterial capsule synthesis protein PGA_cap DYB08_RS06050 PF00999 Sodium/hydrogen exchanger family DYB08_RS06055 PF04228 Putative neutral zinc metallopeptidase DYB08_RS06060 PF05661 Protein of unknown function (DUF808) DYB08_RS06065 PF00579 tRNA synthetases class I (W and Y) DYB08_RS06070 PF00549 CoA-ligase DYB08_RS06070 PF02629 CoA binding domain DYB08_RS06075 PF00549 CoA-ligase DYB08_RS06075 PF08442 ATP-grasp domain DYB08_RS06080 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS06080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_RS06085 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYB08_RS06085 PF02817 e3 binding domain DYB08_RS06085 PF00364 Biotin-requiring enzyme DYB08_RS06090 PF16078 2-oxoglutarate dehydrogenase N-terminus DYB08_RS06090 PF00676 Dehydrogenase E1 component DYB08_RS06090 PF16870 2-oxoglutarate dehydrogenase C-terminal DYB08_RS06090 PF02779 Transketolase, pyrimidine binding domain DYB08_RS06105 PF13085 2Fe-2S iron-sulfur cluster binding domain DYB08_RS06110 PF00890 FAD binding domain DYB08_RS06110 PF02910 Fumarate reductase flavoprotein C-term DYB08_RS06115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DYB08_RS06120 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DYB08_RS06125 PF00285 Citrate synthase, C-terminal domain DYB08_RS06135 PF00581 Rhodanese-like domain DYB08_RS06135 PF17773 UPF0176 acylphosphatase like domain DYB08_RS06155 PF03979 Sigma-70 factor, region 1.1 DYB08_RS06155 PF04545 Sigma-70, region 4 DYB08_RS06155 PF04539 Sigma-70 region 3 DYB08_RS06155 PF04542 Sigma-70 region 2 DYB08_RS06155 PF00140 Sigma-70 factor, region 1.2 DYB08_RS06155 PF04546 Sigma-70, non-essential region DYB08_RS06160 PF04359 Protein of unknown function (DUF493) DYB08_RS06165 PF03099 Biotin/lipoate A/B protein ligase family DYB08_RS06175 PF00465 Iron-containing alcohol dehydrogenase DYB08_RS06180 PF13520 Amino acid permease DYB08_RS06185 PF03358 NADPH-dependent FMN reductase DYB08_RS06190 PF01638 HxlR-like helix-turn-helix DYB08_RS06195 PF00588 SpoU rRNA Methylase family DYB08_RS06200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYB08_RS06200 PF14824 Sirohaem biosynthesis protein central DYB08_RS06200 PF10414 Sirohaem synthase dimerisation region DYB08_RS06205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYB08_RS06205 PF02403 Seryl-tRNA synthetase N-terminal domain DYB08_RS06215 PF03548 Outer membrane lipoprotein carrier protein LolA DYB08_RS06220 PF01016 Ribosomal L27 protein DYB08_RS06225 PF00829 Ribosomal prokaryotic L21 protein DYB08_RS06235 PF00348 Polyprenyl synthetase DYB08_RS06245 PF01569 PAP2 superfamily DYB08_RS06250 PF00529 HlyD membrane-fusion protein of T1SS DYB08_RS06250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_RS06255 PF00873 AcrB/AcrD/AcrF family DYB08_RS06260 PF02321 Outer membrane efflux protein DYB08_RS06265 PF01906 Putative heavy-metal-binding DYB08_RS06270 PF01906 Putative heavy-metal-binding DYB08_RS06290 PF00133 tRNA synthetases class I (I, L, M and V) DYB08_RS06290 PF10458 Valyl tRNA synthetase tRNA binding arm DYB08_RS06290 PF08264 Anticodon-binding domain of tRNA DYB08_RS06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS06310 PF03466 LysR substrate binding domain DYB08_RS06320 PF00909 Ammonium Transporter Family DYB08_RS06330 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS06330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS06330 PF08521 Two-component sensor kinase N-terminal DYB08_RS06335 PF00072 Response regulator receiver domain DYB08_RS06335 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS06340 PF00884 Sulfatase DYB08_RS06340 PF08019 Phosphoethanolamine transferase EptA/EptB DYB08_RS06360 PF01734 Patatin-like phospholipase DYB08_RS06370 PF01145 SPFH domain / Band 7 family DYB08_RS06375 PF04237 YjbR DYB08_RS06380 PF00348 Polyprenyl synthetase DYB08_RS06385 PF04303 PrpF protein DYB08_RS06390 PF00324 Amino acid permease DYB08_RS06400 PF01965 DJ-1/PfpI family DYB08_RS06405 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_RS06405 PF08659 KR domain DYB08_RS06405 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_RS06405 PF16197 Ketoacyl-synthetase C-terminal extension DYB08_RS06405 PF09277 Erythronolide synthase, docking DYB08_RS06405 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS06405 PF00698 Acyl transferase domain DYB08_RS06405 PF00550 Phosphopantetheine attachment site DYB08_RS06405 PF08990 Erythronolide synthase docking DYB08_RS06405 PF14765 Polyketide synthase dehydratase DYB08_RS06410 PF12833 Helix-turn-helix domain DYB08_RS06410 PF06719 AraC-type transcriptional regulator N-terminus DYB08_RS06415 PF02673 Bacitracin resistance protein BacA DYB08_RS06435 PF02525 Flavodoxin-like fold DYB08_RS06450 PF01507 Phosphoadenosine phosphosulfate reductase family DYB08_RS06455 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain DYB08_RS06455 PF06974 Protein of unknown function (DUF1298) DYB08_RS06465 PF10150 Ribonuclease E/G family DYB08_RS06465 PF00575 S1 RNA binding domain DYB08_RS06470 PF02545 Maf-like protein DYB08_RS06475 PF04093 rod shape-determining protein MreD DYB08_RS06480 PF04085 rod shape-determining protein MreC DYB08_RS06490 PF02686 Glu-tRNAGln amidotransferase C subunit DYB08_RS06495 PF01425 Amidase DYB08_RS06500 PF02637 GatB domain DYB08_RS06500 PF02934 GatB/GatE catalytic domain DYB08_RS06530 PF05992 SbmA/BacA-like family DYB08_RS06535 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS06535 PF13291 ACT domain DYB08_RS06540 PF01734 Patatin-like phospholipase DYB08_RS06545 PF01235 Sodium:alanine symporter family DYB08_RS06560 PF00881 Nitroreductase family DYB08_RS06565 PF07690 Major Facilitator Superfamily DYB08_RS06570 PF12805 FUSC-like inner membrane protein yccS DYB08_RS06580 PF00175 Oxidoreductase NAD-binding domain DYB08_RS06580 PF00258 Flavodoxin DYB08_RS06580 PF00667 FAD binding domain DYB08_RS06620 PF17969 L,D-transpeptidase C-terminal domain DYB08_RS06620 PF03734 L,D-transpeptidase catalytic domain DYB08_RS06625 PF04304 Protein of unknown function (DUF454) DYB08_RS06635 PF08085 Entericidin EcnA/B family DYB08_RS06640 PF01546 Peptidase family M20/M25/M40 DYB08_RS06640 PF07687 Peptidase dimerisation domain DYB08_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS06650 PF00072 Response regulator receiver domain DYB08_RS06650 PF01627 Hpt domain DYB08_RS06650 PF01584 CheW-like domain DYB08_RS06655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DYB08_RS06655 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DYB08_RS06660 PF01584 CheW-like domain DYB08_RS06665 PF00072 Response regulator receiver domain DYB08_RS06670 PF00072 Response regulator receiver domain DYB08_RS06695 PF00873 AcrB/AcrD/AcrF family DYB08_RS06700 PF03129 Anticodon binding domain DYB08_RS06700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYB08_RS06700 PF04073 Aminoacyl-tRNA editing domain DYB08_RS06705 PF07411 Domain of unknown function (DUF1508) DYB08_RS06710 PF08274 PhnA Zinc-Ribbon DYB08_RS06710 PF03831 PhnA domain DYB08_RS06715 PF04343 Protein of unknown function, DUF488 DYB08_RS06725 PF01571 Aminomethyltransferase folate-binding domain DYB08_RS06730 PF10411 Disulfide bond isomerase protein N-terminus DYB08_RS06730 PF13098 Thioredoxin-like domain DYB08_RS06740 PF03547 Membrane transport protein DYB08_RS06745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_RS06750 PF00593 TonB dependent receptor DYB08_RS06750 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS06755 PF02245 Methylpurine-DNA glycosylase (MPG) DYB08_RS06760 PF06827 Zinc finger found in FPG and IleRS DYB08_RS06760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DYB08_RS06760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DYB08_RS06775 PF01741 Large-conductance mechanosensitive channel, MscL DYB08_RS06780 PF03144 Elongation factor Tu domain 2 DYB08_RS06780 PF00009 Elongation factor Tu GTP binding domain DYB08_RS06780 PF00679 Elongation factor G C-terminus DYB08_RS06785 PF00860 Permease family DYB08_RS06790 PF05175 Methyltransferase small domain DYB08_RS06790 PF08468 Methyltransferase small domain N-terminal DYB08_RS06795 PF00324 Amino acid permease DYB08_RS06800 PF01139 tRNA-splicing ligase RtcB DYB08_RS06805 PF13505 Outer membrane protein beta-barrel domain DYB08_RS06805 PF00691 OmpA family DYB08_RS06815 PF02803 Thiolase, C-terminal domain DYB08_RS06815 PF00108 Thiolase, N-terminal domain DYB08_RS06825 PF00893 Small Multidrug Resistance protein DYB08_RS06835 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DYB08_RS06835 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DYB08_RS06840 PF01011 PQQ enzyme repeat DYB08_RS06845 PF04966 Carbohydrate-selective porin, OprB family DYB08_RS06850 PF02515 CoA-transferase family III DYB08_RS06855 PF02311 AraC-like ligand binding domain DYB08_RS06855 PF12833 Helix-turn-helix domain DYB08_RS06860 PF00108 Thiolase, N-terminal domain DYB08_RS06860 PF02803 Thiolase, C-terminal domain DYB08_RS06865 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS06865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_RS06865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_RS06890 PF03006 Haemolysin-III related DYB08_RS06895 PF07690 Major Facilitator Superfamily DYB08_RS06895 PF00083 Sugar (and other) transporter DYB08_RS06905 PF02810 SEC-C motif DYB08_RS06905 PF07517 SecA DEAD-like domain DYB08_RS06905 PF07516 SecA Wing and Scaffold domain DYB08_RS06905 PF01043 SecA preprotein cross-linking domain DYB08_RS06920 PF10417 C-terminal domain of 1-Cys peroxiredoxin DYB08_RS06920 PF00578 AhpC/TSA family DYB08_RS06925 PF00753 Metallo-beta-lactamase superfamily DYB08_RS06940 PF02875 Mur ligase family, glutamate ligase domain DYB08_RS06940 PF08245 Mur ligase middle domain DYB08_RS06945 PF01039 Carboxyl transferase domain DYB08_RS06950 PF00290 Tryptophan synthase alpha chain DYB08_RS06975 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS06980 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DYB08_RS06985 PF00593 TonB dependent receptor DYB08_RS06985 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS06990 PF01923 Cobalamin adenosyltransferase DYB08_RS07010 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DYB08_RS07015 PF00072 Response regulator receiver domain DYB08_RS07015 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS07020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS07020 PF00672 HAMP domain DYB08_RS07020 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS07030 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS07030 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_RS07030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS07030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS07035 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_RS07035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS07035 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS07035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS07045 PF03466 LysR substrate binding domain DYB08_RS07045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS07050 PF02798 Glutathione S-transferase, N-terminal domain DYB08_RS07050 PF00043 Glutathione S-transferase, C-terminal domain DYB08_RS07055 PF06146 Phosphate-starvation-inducible E DYB08_RS07075 PF00593 TonB dependent receptor DYB08_RS07075 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS07085 PF02938 GAD domain DYB08_RS07085 PF00152 tRNA synthetases class II (D, K and N) DYB08_RS07085 PF01336 OB-fold nucleic acid binding domain DYB08_RS07090 PF17101 Stealth protein CR1, conserved region 1 DYB08_RS07090 PF11380 Stealth protein CR2, conserved region 2 DYB08_RS07090 PF17102 Stealth protein CR3, conserved region 3 DYB08_RS07115 PF13439 Glycosyltransferase Family 4 DYB08_RS07115 PF00534 Glycosyl transferases group 1 DYB08_RS07120 PF00535 Glycosyl transferase family 2 DYB08_RS07125 PF01522 Polysaccharide deacetylase DYB08_RS07140 PF01063 Amino-transferase class IV DYB08_RS07145 PF03710 Glutamate-ammonia ligase adenylyltransferase DYB08_RS07145 PF08335 GlnD PII-uridylyltransferase DYB08_RS07150 PF07689 KaiB domain DYB08_RS07150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS07150 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS07190 PF02547 Queuosine biosynthesis protein DYB08_RS07205 PF01702 Queuine tRNA-ribosyltransferase DYB08_RS07210 PF02699 Preprotein translocase subunit DYB08_RS07215 PF02355 Protein export membrane protein DYB08_RS07215 PF13721 SecD export protein N-terminal TM region DYB08_RS07215 PF07549 SecD/SecF GG Motif DYB08_RS07220 PF02355 Protein export membrane protein DYB08_RS07220 PF07549 SecD/SecF GG Motif DYB08_RS07225 PF04127 DNA / pantothenate metabolism flavoprotein DYB08_RS07225 PF02441 Flavoprotein DYB08_RS07230 PF04002 RadC-like JAB domain DYB08_RS07235 PF01062 Bestrophin, RFP-TM, chloride channel DYB08_RS07240 PF02811 PHP domain DYB08_RS07245 PF04279 Intracellular septation protein A DYB08_RS07250 PF03795 YCII-related domain DYB08_RS07260 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DYB08_RS07260 PF01266 FAD dependent oxidoreductase DYB08_RS07270 PF04461 Protein of unknown function (DUF520) DYB08_RS07280 PF03061 Thioesterase superfamily DYB08_RS07285 PF00085 Thioredoxin DYB08_RS07290 PF00561 alpha/beta hydrolase fold DYB08_RS07295 PF00753 Metallo-beta-lactamase superfamily DYB08_RS07295 PF04273 Putative phosphatase (DUF442) DYB08_RS07305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DYB08_RS07305 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS07340 PF17152 Periplasmic sensor domain DYB08_RS07340 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS07345 PF01389 OmpA-like transmembrane domain DYB08_RS07345 PF00691 OmpA family DYB08_RS07350 PF00149 Calcineurin-like phosphoesterase DYB08_RS07350 PF10518 TAT (twin-arginine translocation) pathway signal sequence DYB08_RS07355 PF13091 PLD-like domain DYB08_RS07365 PF01926 50S ribosome-binding GTPase DYB08_RS07365 PF13167 GTP-binding GTPase N-terminal DYB08_RS07365 PF16360 GTP-binding GTPase Middle Region DYB08_RS07385 PF00149 Calcineurin-like phosphoesterase DYB08_RS07390 PF00398 Ribosomal RNA adenine dimethylase DYB08_RS07395 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DYB08_RS07400 PF00572 Ribosomal protein L13 DYB08_RS07405 PF00380 Ribosomal protein S9/S16 DYB08_RS07410 PF00043 Glutathione S-transferase, C-terminal domain DYB08_RS07410 PF13417 Glutathione S-transferase, N-terminal domain DYB08_RS07415 PF04386 Stringent starvation protein B DYB08_RS07425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_RS07425 PF00364 Biotin-requiring enzyme DYB08_RS07425 PF00289 Biotin carboxylase, N-terminal domain DYB08_RS07425 PF02785 Biotin carboxylase C-terminal domain DYB08_RS07450 PF01039 Carboxyl transferase domain DYB08_RS07465 PF17932 Tetracyclin repressor-like, C-terminal domain DYB08_RS07465 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS07470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS07470 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS07470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS07515 PF01066 CDP-alcohol phosphatidyltransferase DYB08_RS07520 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DYB08_RS07540 PF00056 lactate/malate dehydrogenase, NAD binding domain DYB08_RS07540 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DYB08_RS07550 PF01551 Peptidase family M23 DYB08_RS07550 PF01464 Transglycosylase SLT domain DYB08_RS07550 PF10145 Phage-related minor tail protein DYB08_RS07555 PF00919 Uncharacterized protein family UPF0004 DYB08_RS07555 PF01938 TRAM domain DYB08_RS07555 PF04055 Radical SAM superfamily DYB08_RS07560 PF02562 PhoH-like protein DYB08_RS07565 PF02130 Uncharacterized protein family UPF0054 DYB08_RS07590 PF03358 NADPH-dependent FMN reductase DYB08_RS07595 PF03631 Virulence factor BrkB DYB08_RS07600 PF00892 EamA-like transporter family DYB08_RS07605 PF12833 Helix-turn-helix domain DYB08_RS07610 PF01557 Fumarylacetoacetate (FAA) hydrolase family DYB08_RS07655 PF08206 Ribonuclease B OB domain DYB08_RS07655 PF17876 Cold shock domain DYB08_RS07655 PF00575 S1 RNA binding domain DYB08_RS07655 PF08461 Ribonuclease R winged-helix domain DYB08_RS07655 PF00773 RNB domain DYB08_RS07660 PF01432 Peptidase family M3 DYB08_RS07665 PF09526 Probable metal-binding protein (DUF2387) DYB08_RS07695 PF03937 Flavinator of succinate dehydrogenase DYB08_RS07700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS07700 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS07700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS07705 PF00743 Flavin-binding monooxygenase-like DYB08_RS07710 PF01196 Ribosomal protein L17 DYB08_RS07715 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DYB08_RS07715 PF01000 RNA polymerase Rpb3/RpoA insert domain DYB08_RS07715 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DYB08_RS07720 PF00163 Ribosomal protein S4/S9 N-terminal domain DYB08_RS07720 PF01479 S4 domain DYB08_RS07725 PF00411 Ribosomal protein S11 DYB08_RS07730 PF00416 Ribosomal protein S13/S18 DYB08_RS07735 PF00444 Ribosomal protein L36 DYB08_RS07740 PF00344 SecY translocase DYB08_RS07745 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DYB08_RS07750 PF00327 Ribosomal protein L30p/L7e DYB08_RS07755 PF00333 Ribosomal protein S5, N-terminal domain DYB08_RS07755 PF03719 Ribosomal protein S5, C-terminal domain DYB08_RS07760 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DYB08_RS07765 PF00347 Ribosomal protein L6 DYB08_RS07770 PF00410 Ribosomal protein S8 DYB08_RS07775 PF00253 Ribosomal protein S14p/S29e DYB08_RS07780 PF00281 Ribosomal protein L5 DYB08_RS07780 PF00673 ribosomal L5P family C-terminus DYB08_RS07785 PF00467 KOW motif DYB08_RS07785 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DYB08_RS07790 PF00238 Ribosomal protein L14p/L23e DYB08_RS07795 PF00366 Ribosomal protein S17 DYB08_RS07800 PF00831 Ribosomal L29 protein DYB08_RS07805 PF00252 Ribosomal protein L16p/L10e DYB08_RS07810 PF07650 KH domain DYB08_RS07810 PF00189 Ribosomal protein S3, C-terminal domain DYB08_RS07815 PF00237 Ribosomal protein L22p/L17e DYB08_RS07820 PF00203 Ribosomal protein S19 DYB08_RS07825 PF00181 Ribosomal Proteins L2, RNA binding domain DYB08_RS07825 PF03947 Ribosomal Proteins L2, C-terminal domain DYB08_RS07830 PF00276 Ribosomal protein L23 DYB08_RS07835 PF00573 Ribosomal protein L4/L1 family DYB08_RS07840 PF00297 Ribosomal protein L3 DYB08_RS07845 PF00338 Ribosomal protein S10p/S20e DYB08_RS07850 PF00117 Glutamine amidotransferase class-I DYB08_RS07855 PF01053 Cys/Met metabolism PLP-dependent enzyme DYB08_RS07860 PF05872 Bacterial protein of unknown function (DUF853) DYB08_RS07865 PF00042 Globin DYB08_RS07865 PF00175 Oxidoreductase NAD-binding domain DYB08_RS07865 PF00970 Oxidoreductase FAD-binding domain DYB08_RS07870 PF02082 Transcriptional regulator DYB08_RS07875 PF01926 50S ribosome-binding GTPase DYB08_RS07885 PF00375 Sodium:dicarboxylate symporter family DYB08_RS07895 PF01553 Acyltransferase DYB08_RS07910 PF17191 RecG wedge domain DYB08_RS07910 PF00271 Helicase conserved C-terminal domain DYB08_RS07910 PF00270 DEAD/DEAH box helicase DYB08_RS07915 PF00156 Phosphoribosyl transferase domain DYB08_RS07920 PF00293 NUDIX domain DYB08_RS07925 PF03641 Possible lysine decarboxylase DYB08_RS07930 PF01544 CorA-like Mg2+ transporter protein DYB08_RS07940 PF05494 MlaC protein DYB08_RS07950 PF02405 Permease MlaE DYB08_RS07955 PF00005 ABC transporter DYB08_RS07965 PF03880 DbpA RNA binding domain DYB08_RS07965 PF00270 DEAD/DEAH box helicase DYB08_RS07965 PF12343 Cold shock protein DEAD box A DYB08_RS07965 PF00271 Helicase conserved C-terminal domain DYB08_RS07970 PF00459 Inositol monophosphatase family DYB08_RS07975 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DYB08_RS07975 PF02779 Transketolase, pyrimidine binding domain DYB08_RS07975 PF02780 Transketolase, C-terminal domain DYB08_RS07980 PF00925 GTP cyclohydrolase II DYB08_RS07985 PF01218 Coproporphyrinogen III oxidase DYB08_RS07990 PF01488 Shikimate / quinate 5-dehydrogenase DYB08_RS07990 PF08501 Shikimate dehydrogenase substrate binding domain DYB08_RS07990 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DYB08_RS08000 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_RS08000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS08000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS08000 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS08010 PF04024 PspC domain DYB08_RS08015 PF00571 CBS domain DYB08_RS08040 PF02091 Glycyl-tRNA synthetase alpha subunit DYB08_RS08045 PF05746 DALR anticodon binding domain DYB08_RS08045 PF02092 Glycyl-tRNA synthetase beta subunit DYB08_RS08055 PF00892 EamA-like transporter family DYB08_RS08060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS08060 PF03466 LysR substrate binding domain DYB08_RS08075 PF00082 Subtilase family DYB08_RS08075 PF05922 Peptidase inhibitor I9 DYB08_RS08090 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DYB08_RS08095 PF04996 Succinylarginine dihydrolase DYB08_RS08100 PF00171 Aldehyde dehydrogenase family DYB08_RS08105 PF04958 Arginine N-succinyltransferase beta subunit DYB08_RS08110 PF00202 Aminotransferase class-III DYB08_RS08115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DYB08_RS08115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DYB08_RS08120 PF00324 Amino acid permease DYB08_RS08150 PF13614 AAA domain DYB08_RS08155 PF01594 AI-2E family transporter DYB08_RS08160 PF00080 Copper/zinc superoxide dismutase (SODC) DYB08_RS08165 PF12805 FUSC-like inner membrane protein yccS DYB08_RS08170 PF07690 Major Facilitator Superfamily DYB08_RS08200 PF03992 Antibiotic biosynthesis monooxygenase DYB08_RS08210 PF02913 FAD linked oxidases, C-terminal domain DYB08_RS08210 PF01565 FAD binding domain DYB08_RS08215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DYB08_RS08215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DYB08_RS08220 PF00892 EamA-like transporter family DYB08_RS08225 PF00892 EamA-like transporter family DYB08_RS08235 PF01925 Sulfite exporter TauE/SafE DYB08_RS08240 PF09157 Pseudouridine synthase II TruB, C-terminal DYB08_RS08240 PF16198 tRNA pseudouridylate synthase B C-terminal domain DYB08_RS08240 PF01509 TruB family pseudouridylate synthase (N terminal domain) DYB08_RS08245 PF03280 Proteobacterial lipase chaperone protein DYB08_RS08250 PF00561 alpha/beta hydrolase fold DYB08_RS08255 PF01245 Ribosomal protein L19 DYB08_RS08260 PF01746 tRNA (Guanine-1)-methyltransferase DYB08_RS08270 PF05239 PRC-barrel domain DYB08_RS08270 PF01782 RimM N-terminal domain DYB08_RS08275 PF00886 Ribosomal protein S16 DYB08_RS08315 PF02401 LytB protein DYB08_RS08320 PF00625 Guanylate kinase DYB08_RS08325 PF01192 RNA polymerase Rpb6 DYB08_RS08335 PF02824 TGS domain DYB08_RS08335 PF04607 Region found in RelA / SpoT proteins DYB08_RS08335 PF13291 ACT domain DYB08_RS08340 PF01042 Endoribonuclease L-PSP DYB08_RS08345 PF04324 BFD-like [2Fe-2S] binding domain DYB08_RS08350 PF00210 Ferritin-like domain DYB08_RS08355 PF15864 Protein glycosylation ligase DYB08_RS08355 PF11846 Virulence factor membrane-bound polymerase, C-terminal DYB08_RS08355 PF04932 O-Antigen ligase DYB08_RS08365 PF07963 Prokaryotic N-terminal methylation motif DYB08_RS08365 PF00114 Pilin (bacterial filament) DYB08_RS08375 PF04536 TPM domain DYB08_RS08380 PF04011 LemA family DYB08_RS08390 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS08390 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DYB08_RS08395 PF01493 GXGXG motif DYB08_RS08395 PF00310 Glutamine amidotransferases class-II DYB08_RS08395 PF01645 Conserved region in glutamate synthase DYB08_RS08395 PF04898 Glutamate synthase central domain DYB08_RS08405 PF01761 3-dehydroquinate synthase DYB08_RS08410 PF01202 Shikimate kinase DYB08_RS08415 PF11741 AMIN domain DYB08_RS08415 PF00263 Bacterial type II and III secretion system protein DYB08_RS08415 PF03958 Bacterial type II/III secretion system short domain DYB08_RS08415 PF07660 Secretin and TonB N terminus short domain DYB08_RS08425 PF04350 Pilus assembly protein, PilO DYB08_RS08430 PF05137 Fimbrial assembly protein (PilN) DYB08_RS08435 PF11104 Type IV pilus assembly protein PilM; DYB08_RS08440 PF17092 Penicillin-binding protein OB-like domain DYB08_RS08440 PF00912 Transglycosylase DYB08_RS08440 PF00905 Penicillin binding protein transpeptidase domain DYB08_RS08445 PF13847 Methyltransferase domain DYB08_RS08455 PF00953 Glycosyl transferase family 4 DYB08_RS08460 PF02875 Mur ligase family, glutamate ligase domain DYB08_RS08460 PF01225 Mur ligase family, catalytic domain DYB08_RS08460 PF08245 Mur ligase middle domain DYB08_RS08465 PF08245 Mur ligase middle domain DYB08_RS08465 PF02875 Mur ligase family, glutamate ligase domain DYB08_RS08465 PF01225 Mur ligase family, catalytic domain DYB08_RS08470 PF03717 Penicillin-binding Protein dimerisation domain DYB08_RS08470 PF00905 Penicillin binding protein transpeptidase domain DYB08_RS08480 PF01795 MraW methylase family DYB08_RS08495 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYB08_RS08510 PF00324 Amino acid permease DYB08_RS08540 PF01545 Cation efflux family DYB08_RS08545 PF00873 AcrB/AcrD/AcrF family DYB08_RS08550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_RS08550 PF00529 HlyD membrane-fusion protein of T1SS DYB08_RS08570 PF04191 Phospholipid methyltransferase DYB08_RS08595 PF12848 ABC transporter DYB08_RS08595 PF00005 ABC transporter DYB08_RS08600 PF01053 Cys/Met metabolism PLP-dependent enzyme DYB08_RS08605 PF00106 short chain dehydrogenase DYB08_RS08610 PF00916 Sulfate permease family DYB08_RS08610 PF01740 STAS domain DYB08_RS08615 PF09371 Tex-like protein N-terminal domain DYB08_RS08615 PF00575 S1 RNA binding domain DYB08_RS08615 PF16921 Tex protein YqgF-like domain DYB08_RS08615 PF17674 HHH domain DYB08_RS08620 PF00072 Response regulator receiver domain DYB08_RS08620 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS08625 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS08625 PF00672 HAMP domain DYB08_RS08635 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain DYB08_RS08635 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain DYB08_RS08640 PF00583 Acetyltransferase (GNAT) family DYB08_RS08660 PF00475 Imidazoleglycerol-phosphate dehydratase DYB08_RS08665 PF00117 Glutamine amidotransferase class-I DYB08_RS08680 PF00977 Histidine biosynthesis protein DYB08_RS08695 PF03992 Antibiotic biosynthesis monooxygenase DYB08_RS08710 PF01636 Phosphotransferase enzyme family DYB08_RS08715 PF00977 Histidine biosynthesis protein DYB08_RS08730 PF00230 Major intrinsic protein DYB08_RS08755 PF02705 K+ potassium transporter DYB08_RS08775 PF02525 Flavodoxin-like fold DYB08_RS08785 PF01638 HxlR-like helix-turn-helix DYB08_RS08815 PF02311 AraC-like ligand binding domain DYB08_RS08815 PF12833 Helix-turn-helix domain DYB08_RS08820 PF00248 Aldo/keto reductase family DYB08_RS08840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS08840 PF03466 LysR substrate binding domain DYB08_RS08845 PF07690 Major Facilitator Superfamily DYB08_RS08865 PF01593 Flavin containing amine oxidoreductase DYB08_RS08870 PF02678 Pirin DYB08_RS08870 PF05726 Pirin C-terminal cupin domain DYB08_RS08875 PF00857 Isochorismatase family DYB08_RS08880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS08885 PF00171 Aldehyde dehydrogenase family DYB08_RS08890 PF00202 Aminotransferase class-III DYB08_RS08895 PF00155 Aminotransferase class I and II DYB08_RS08895 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS08900 PF00324 Amino acid permease DYB08_RS08930 PF00436 Single-strand binding protein family DYB08_RS08935 PF07690 Major Facilitator Superfamily DYB08_RS08945 PF02581 Thiamine monophosphate synthase DYB08_RS08945 PF08543 Phosphomethylpyrimidine kinase DYB08_RS08945 PF03070 TENA/THI-4/PQQC family DYB08_RS08950 PF06942 GlpM protein DYB08_RS08960 PF00107 Zinc-binding dehydrogenase DYB08_RS08960 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS08965 PF16925 Tetracyclin repressor-like, C-terminal domain DYB08_RS08965 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS08970 PF17755 UvrA DNA-binding domain DYB08_RS08970 PF17760 UvrA interaction domain DYB08_RS08970 PF00005 ABC transporter DYB08_RS08980 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS08990 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_RS09000 PF00474 Sodium:solute symporter family DYB08_RS09005 PF04341 Protein of unknown function, DUF485 DYB08_RS09010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS09010 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS09010 PF01627 Hpt domain DYB08_RS09010 PF00072 Response regulator receiver domain DYB08_RS09010 PF00672 HAMP domain DYB08_RS09020 PF00072 Response regulator receiver domain DYB08_RS09020 PF00196 Bacterial regulatory proteins, luxR family DYB08_RS09025 PF03358 NADPH-dependent FMN reductase DYB08_RS09030 PF00296 Luciferase-like monooxygenase DYB08_RS09035 PF00872 Transposase, Mutator family DYB08_RS09040 PF01037 Lrp/AsnC ligand binding domain DYB08_RS09045 PF00857 Isochorismatase family DYB08_RS09050 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS09050 PF16177 Acetyl-coenzyme A synthetase N-terminus DYB08_RS09050 PF00501 AMP-binding enzyme DYB08_RS09060 PF00924 Mechanosensitive ion channel DYB08_RS09065 PF04452 RNA methyltransferase DYB08_RS09070 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DYB08_RS09075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_RS09095 PF01368 DHH family DYB08_RS09095 PF17768 RecJ OB domain DYB08_RS09095 PF02272 DHHA1 domain DYB08_RS09100 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DYB08_RS09100 PF01243 Pyridoxamine 5'-phosphate oxidase DYB08_RS09105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_RS09105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_RS09105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_RS09105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_RS09110 PF00478 IMP dehydrogenase / GMP reductase domain DYB08_RS09110 PF00571 CBS domain DYB08_RS09115 PF03692 Putative zinc- or iron-chelating domain DYB08_RS09120 PF00258 Flavodoxin DYB08_RS09120 PF01613 Flavin reductase like domain DYB08_RS09125 PF00593 TonB dependent receptor DYB08_RS09125 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS09130 PF01169 Uncharacterized protein family UPF0016 DYB08_RS09140 PF00364 Biotin-requiring enzyme DYB08_RS09140 PF02817 e3 binding domain DYB08_RS09140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DYB08_RS09145 PF00456 Transketolase, thiamine diphosphate binding domain DYB08_RS09145 PF17831 Pyruvate dehydrogenase E1 component middle domain DYB08_RS09150 PF01551 Peptidase family M23 DYB08_RS09160 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DYB08_RS09165 PF12327 FtsZ family, C-terminal domain DYB08_RS09165 PF00091 Tubulin/FtsZ family, GTPase domain DYB08_RS09170 PF02491 SHS2 domain inserted in FTSA DYB08_RS09175 PF08478 POTRA domain, FtsQ-type DYB08_RS09175 PF03799 Cell division protein FtsQ DYB08_RS09180 PF01820 D-ala D-ala ligase N-terminus DYB08_RS09180 PF07478 D-ala D-ala ligase C-terminus DYB08_RS09185 PF08245 Mur ligase middle domain DYB08_RS09185 PF02875 Mur ligase family, glutamate ligase domain DYB08_RS09185 PF01225 Mur ligase family, catalytic domain DYB08_RS09190 PF04101 Glycosyltransferase family 28 C-terminal domain DYB08_RS09190 PF03033 Glycosyltransferase family 28 N-terminal domain DYB08_RS09195 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DYB08_RS09195 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DYB08_RS09205 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS09205 PF00593 TonB dependent receptor DYB08_RS09210 PF00156 Phosphoribosyl transferase domain DYB08_RS09215 PF03372 Endonuclease/Exonuclease/phosphatase family DYB08_RS09220 PF03960 ArsC family DYB08_RS09230 PF07859 alpha/beta hydrolase fold DYB08_RS09235 PF07694 5TMR of 5TMR-LYT DYB08_RS09235 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS09240 PF02683 Cytochrome C biogenesis protein transmembrane region DYB08_RS09240 PF11412 Disulphide bond corrector protein DsbC DYB08_RS09270 PF00576 HIUase/Transthyretin family DYB08_RS09275 PF00860 Permease family DYB08_RS09285 PF01494 FAD binding domain DYB08_RS09290 PF03561 Allantoicase repeat DYB08_RS09295 PF04115 Ureidoglycolate lyase DYB08_RS09300 PF00106 short chain dehydrogenase DYB08_RS09305 PF00204 DNA gyrase B DYB08_RS09305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS09305 PF00986 DNA gyrase B subunit, carboxyl terminus DYB08_RS09305 PF01751 Toprim domain DYB08_RS09310 PF05728 Uncharacterised protein family (UPF0227) DYB08_RS09325 PF00877 NlpC/P60 family DYB08_RS09325 PF01476 LysM domain DYB08_RS09330 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DYB08_RS09330 PF04717 Type VI secretion system, phage-baseplate injector DYB08_RS09330 PF13296 Putative type VI secretion system Rhs element Vgr DYB08_RS09335 PF02600 Disulfide bond formation protein DsbB DYB08_RS09340 PF04262 Glutamate-cysteine ligase DYB08_RS09355 PF04286 Protein of unknown function (DUF445) DYB08_RS09360 PF00155 Aminotransferase class I and II DYB08_RS09365 PF01554 MatE DYB08_RS09370 PF00106 short chain dehydrogenase DYB08_RS09380 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS09380 PF00072 Response regulator receiver domain DYB08_RS09385 PF11808 Phosphate regulon sensor protein PhoR DYB08_RS09385 PF00989 PAS fold DYB08_RS09385 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS09385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS09415 PF03069 Acetamidase/Formamidase family DYB08_RS09420 PF02666 Phosphatidylserine decarboxylase DYB08_RS09425 PF00581 Rhodanese-like domain DYB08_RS09430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DYB08_RS09430 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DYB08_RS09435 PF02580 D-Tyr-tRNA(Tyr) deacylase DYB08_RS09465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DYB08_RS09465 PF00925 GTP cyclohydrolase II DYB08_RS09470 PF00885 6,7-dimethyl-8-ribityllumazine synthase DYB08_RS09475 PF01029 NusB family DYB08_RS09480 PF02769 AIR synthase related protein, C-terminal domain DYB08_RS09480 PF00586 AIR synthase related protein, N-terminal domain DYB08_RS09485 PF04608 Phosphatidylglycerophosphatase A DYB08_RS09490 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS09490 PF14602 Hexapeptide repeat of succinyl-transferase DYB08_RS09490 PF12804 MobA-like NTP transferase domain DYB08_RS09495 PF01380 SIS domain DYB08_RS09500 PF01177 Asp/Glu/Hydantoin racemase DYB08_RS09505 PF13419 Haloacid dehalogenase-like hydrolase DYB08_RS09515 PF00491 Arginase family DYB08_RS09520 PF01979 Amidohydrolase family DYB08_RS09525 PF00324 Amino acid permease DYB08_RS09530 PF00221 Aromatic amino acid lyase DYB08_RS09535 PF17391 Urocanase N-terminal domain DYB08_RS09535 PF17392 Urocanase C-terminal domain DYB08_RS09535 PF01175 Urocanase Rossmann-like domain DYB08_RS09540 PF05962 HutD DYB08_RS09545 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS09545 PF07702 UTRA domain DYB08_RS09555 PF07683 Cobalamin synthesis protein cobW C-terminal domain DYB08_RS09555 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYB08_RS09565 PF00324 Amino acid permease DYB08_RS09575 PF02798 Glutathione S-transferase, N-terminal domain DYB08_RS09575 PF14497 Glutathione S-transferase, C-terminal domain DYB08_RS09580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_RS09590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_RS09595 PF04463 Protein of unknown function (DUF523) DYB08_RS09600 PF01554 MatE DYB08_RS09605 PF01758 Sodium Bile acid symporter family DYB08_RS09610 PF00857 Isochorismatase family DYB08_RS09615 PF00701 Dihydrodipicolinate synthetase family DYB08_RS09625 PF01259 SAICAR synthetase DYB08_RS09635 PF01226 Formate/nitrite transporter DYB08_RS09640 PF12002 MgsA AAA+ ATPase C terminal DYB08_RS09640 PF16193 AAA C-terminal domain DYB08_RS09640 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_RS09645 PF07995 Glucose / Sorbosone dehydrogenase DYB08_RS09650 PF03692 Putative zinc- or iron-chelating domain DYB08_RS09655 PF07043 Protein of unknown function (DUF1328) DYB08_RS09660 PF02230 Phospholipase/Carboxylesterase DYB08_RS09670 PF10576 Iron-sulfur binding domain of endonuclease III DYB08_RS09670 PF00730 HhH-GPD superfamily base excision DNA repair protein DYB08_RS09670 PF14815 NUDIX domain DYB08_RS09670 PF00633 Helix-hairpin-helix motif DYB08_RS09685 PF03352 Methyladenine glycosylase DYB08_RS09690 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS09690 PF00107 Zinc-binding dehydrogenase DYB08_RS09695 PF00155 Aminotransferase class I and II DYB08_RS09695 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS09710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS09710 PF03466 LysR substrate binding domain DYB08_RS09715 PF00248 Aldo/keto reductase family DYB08_RS09720 PF07690 Major Facilitator Superfamily DYB08_RS09730 PF05173 Dihydrodipicolinate reductase, C-terminus DYB08_RS09730 PF01113 Dihydrodipicolinate reductase, N-terminus DYB08_RS09740 PF00226 DnaJ domain DYB08_RS09740 PF01556 DnaJ C terminal domain DYB08_RS09740 PF00684 DnaJ central domain DYB08_RS09750 PF00873 AcrB/AcrD/AcrF family DYB08_RS09755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DYB08_RS09760 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS09760 PF08361 MAATS-type transcriptional repressor, C-terminal region DYB08_RS09765 PF00311 Phosphoenolpyruvate carboxylase DYB08_RS09770 PF00860 Permease family DYB08_RS09775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS09775 PF03466 LysR substrate binding domain DYB08_RS09790 PF00920 Dehydratase family DYB08_RS09795 PF02911 Formyl transferase, C-terminal domain DYB08_RS09795 PF00551 Formyl transferase DYB08_RS09800 PF01029 NusB family DYB08_RS09800 PF01189 16S rRNA methyltransferase RsmB/F DYB08_RS09810 PF00209 Sodium:neurotransmitter symporter family DYB08_RS09855 PF00579 tRNA synthetases class I (W and Y) DYB08_RS09860 PF03702 Anhydro-N-acetylmuramic acid kinase DYB08_RS09865 PF00561 alpha/beta hydrolase fold DYB08_RS09870 PF01521 Iron-sulphur cluster biosynthesis DYB08_RS09890 PF00005 ABC transporter DYB08_RS09890 PF12848 ABC transporter DYB08_RS09895 PF09335 SNARE associated Golgi protein DYB08_RS09905 PF00204 DNA gyrase B DYB08_RS09905 PF18053 DNA gyrase B subunit insert domain DYB08_RS09905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS09905 PF00986 DNA gyrase B subunit, carboxyl terminus DYB08_RS09905 PF01751 Toprim domain DYB08_RS09910 PF02463 RecF/RecN/SMC N terminal domain DYB08_RS09915 PF02768 DNA polymerase III beta subunit, C-terminal domain DYB08_RS09915 PF02767 DNA polymerase III beta subunit, central domain DYB08_RS09915 PF00712 DNA polymerase III beta subunit, N-terminal domain DYB08_RS09920 PF00308 Bacterial dnaA protein DYB08_RS09920 PF08299 Bacterial dnaA protein helix-turn-helix DYB08_RS09920 PF11638 DnaA N-terminal domain DYB08_RS09925 PF00468 Ribosomal protein L34 DYB08_RS09930 PF00825 Ribonuclease P DYB08_RS09935 PF01809 Putative membrane protein insertion efficiency factor DYB08_RS09940 PF14849 YidC periplasmic domain DYB08_RS09940 PF02096 60Kd inner membrane protein DYB08_RS09945 PF12631 MnmE helical domain DYB08_RS09945 PF10396 GTP-binding protein TrmE N-terminus DYB08_RS09945 PF01926 50S ribosome-binding GTPase DYB08_RS09950 PF02583 Metal-sensitive transcriptional repressor DYB08_RS09955 PF16916 Dimerisation domain of Zinc Transporter DYB08_RS09955 PF01545 Cation efflux family DYB08_RS09960 PF13098 Thioredoxin-like domain DYB08_RS09960 PF10411 Disulfide bond isomerase protein N-terminus DYB08_RS09970 PF00156 Phosphoribosyl transferase domain DYB08_RS09975 PF01979 Amidohydrolase family DYB08_RS09980 PF00355 Rieske [2Fe-2S] domain DYB08_RS09985 PF03738 Glutathionylspermidine synthase preATP-grasp DYB08_RS09995 PF03741 Integral membrane protein TerC family DYB08_RS10000 PF01569 PAP2 superfamily DYB08_RS10010 PF08245 Mur ligase middle domain DYB08_RS10010 PF02875 Mur ligase family, glutamate ligase domain DYB08_RS10010 PF01225 Mur ligase family, catalytic domain DYB08_RS10025 PF00731 AIR carboxylase DYB08_RS10030 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DYB08_RS10030 PF02222 ATP-grasp domain DYB08_RS10035 PF13406 Transglycosylase SLT domain DYB08_RS10055 PF00012 Hsp70 protein DYB08_RS10060 PF01025 GrpE DYB08_RS10100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DYB08_RS10140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_RS10145 PF01252 Signal peptidase (SPase) II DYB08_RS10150 PF00133 tRNA synthetases class I (I, L, M and V) DYB08_RS10150 PF08264 Anticodon-binding domain of tRNA DYB08_RS10150 PF06827 Zinc finger found in FPG and IleRS DYB08_RS10155 PF01687 Riboflavin kinase DYB08_RS10155 PF06574 FAD synthetase DYB08_RS10165 PF01048 Phosphorylase superfamily DYB08_RS10170 PF08362 YcdC-like protein, C-terminal region DYB08_RS10170 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS10175 PF00005 ABC transporter DYB08_RS10180 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS10185 PF00296 Luciferase-like monooxygenase DYB08_RS10190 PF09084 NMT1/THI5 like DYB08_RS10195 PF09084 NMT1/THI5 like DYB08_RS10200 PF00696 Amino acid kinase family DYB08_RS10200 PF00583 Acetyltransferase (GNAT) family DYB08_RS10215 PF00106 short chain dehydrogenase DYB08_RS10220 PF13419 Haloacid dehalogenase-like hydrolase DYB08_RS10230 PF01323 DSBA-like thioredoxin domain DYB08_RS10235 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS10235 PF08360 QacR-like protein, C-terminal region DYB08_RS10240 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS10245 PF00175 Oxidoreductase NAD-binding domain DYB08_RS10250 PF00487 Fatty acid desaturase DYB08_RS10255 PF03725 3' exoribonuclease family, domain 2 DYB08_RS10255 PF01138 3' exoribonuclease family, domain 1 DYB08_RS10260 PF05506 Domain of unknown function (DUF756) DYB08_RS10260 PF04185 Phosphoesterase family DYB08_RS10270 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DYB08_RS10270 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DYB08_RS10275 PF01510 N-acetylmuramoyl-L-alanine amidase DYB08_RS10280 PF03023 Lipid II flippase MurJ DYB08_RS10285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYB08_RS10285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_RS10290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_RS10290 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DYB08_RS10295 PF02706 Chain length determinant protein DYB08_RS10295 PF13614 AAA domain DYB08_RS10295 PF13807 G-rich domain on putative tyrosine kinase DYB08_RS10300 PF01451 Low molecular weight phosphotyrosine protein phosphatase DYB08_RS10305 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DYB08_RS10305 PF10531 SLBB domain DYB08_RS10305 PF02563 Polysaccharide biosynthesis/export protein DYB08_RS10310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYB08_RS10310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYB08_RS10310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYB08_RS10315 PF01370 NAD dependent epimerase/dehydratase family DYB08_RS10340 PF08485 Polysaccharide biosynthesis protein C-terminal DYB08_RS10340 PF02719 Polysaccharide biosynthesis protein DYB08_RS10345 PF01370 NAD dependent epimerase/dehydratase family DYB08_RS10350 PF02350 UDP-N-acetylglucosamine 2-epimerase DYB08_RS10355 PF13579 Glycosyl transferase 4-like domain DYB08_RS10360 PF01370 NAD dependent epimerase/dehydratase family DYB08_RS10365 PF00953 Glycosyl transferase family 4 DYB08_RS10370 PF02397 Bacterial sugar transferase DYB08_RS10375 PF00483 Nucleotidyl transferase DYB08_RS10380 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DYB08_RS10380 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DYB08_RS10380 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DYB08_RS10395 PF16363 GDP-mannose 4,6 dehydratase DYB08_RS10400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_RS10400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_RS10400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_RS10400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_RS10405 PF02652 L-lactate permease DYB08_RS10410 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS10410 PF07729 FCD domain DYB08_RS10415 PF01070 FMN-dependent dehydrogenase DYB08_RS10420 PF09330 D-lactate dehydrogenase, membrane binding DYB08_RS10420 PF01565 FAD binding domain DYB08_RS10425 PF00155 Aminotransferase class I and II DYB08_RS10435 PF07729 FCD domain DYB08_RS10435 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS10445 PF00285 Citrate synthase, C-terminal domain DYB08_RS10450 PF00694 Aconitase C-terminal domain DYB08_RS10450 PF00330 Aconitase family (aconitate hydratase) DYB08_RS10470 PF00293 NUDIX domain DYB08_RS10495 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_RS10495 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_RS10510 PF00849 RNA pseudouridylate synthase DYB08_RS10525 PF00593 TonB dependent receptor DYB08_RS10525 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS10535 PF01037 Lrp/AsnC ligand binding domain DYB08_RS10540 PF01266 FAD dependent oxidoreductase DYB08_RS10545 PF01168 Alanine racemase, N-terminal domain DYB08_RS10545 PF00842 Alanine racemase, C-terminal domain DYB08_RS10550 PF01042 Endoribonuclease L-PSP DYB08_RS10555 PF00324 Amino acid permease DYB08_RS10560 PF00324 Amino acid permease DYB08_RS10570 PF00171 Aldehyde dehydrogenase family DYB08_RS10575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYB08_RS10575 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYB08_RS10580 PF00501 AMP-binding enzyme DYB08_RS10580 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS10585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS10585 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS10585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS10590 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS10595 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS10600 PF07690 Major Facilitator Superfamily DYB08_RS10600 PF00083 Sugar (and other) transporter DYB08_RS10605 PF00765 Autoinducer synthase DYB08_RS10615 PF03472 Autoinducer binding domain DYB08_RS10615 PF00196 Bacterial regulatory proteins, luxR family DYB08_RS10620 PF00501 AMP-binding enzyme DYB08_RS10625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS10625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS10625 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS10630 PF16197 Ketoacyl-synthetase C-terminal extension DYB08_RS10630 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_RS10630 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_RS10630 PF08242 Methyltransferase domain DYB08_RS10630 PF00550 Phosphopantetheine attachment site DYB08_RS10630 PF14765 Polyketide synthase dehydratase DYB08_RS10630 PF00975 Thioesterase domain DYB08_RS10635 PF00550 Phosphopantetheine attachment site DYB08_RS10635 PF07993 Male sterility protein DYB08_RS10635 PF00668 Condensation domain DYB08_RS10635 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS10635 PF00501 AMP-binding enzyme DYB08_RS10640 PF00668 Condensation domain DYB08_RS10640 PF00550 Phosphopantetheine attachment site DYB08_RS10640 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS10640 PF00501 AMP-binding enzyme DYB08_RS10640 PF00975 Thioesterase domain DYB08_RS10655 PF12697 Alpha/beta hydrolase family DYB08_RS10660 PF01648 4'-phosphopantetheinyl transferase superfamily DYB08_RS10675 PF01722 BolA-like protein DYB08_RS10685 PF13614 AAA domain DYB08_RS10700 PF09335 SNARE associated Golgi protein DYB08_RS10705 PF07681 DoxX DYB08_RS10710 PF04286 Protein of unknown function (DUF445) DYB08_RS10715 PF02540 NAD synthase DYB08_RS10715 PF00117 Glutamine amidotransferase class-I DYB08_RS10715 PF00958 GMP synthase C terminal domain DYB08_RS10720 PF01909 Nucleotidyltransferase domain DYB08_RS10720 PF13427 Domain of unknown function (DUF4111) DYB08_RS10725 PF03551 Transcriptional regulator PadR-like family DYB08_RS10735 PF05726 Pirin C-terminal cupin domain DYB08_RS10735 PF02678 Pirin DYB08_RS10755 PF00750 tRNA synthetases class I (R) DYB08_RS10755 PF05746 DALR anticodon binding domain DYB08_RS10755 PF03485 Arginyl tRNA synthetase N terminal domain DYB08_RS10760 PF00390 Malic enzyme, N-terminal domain DYB08_RS10760 PF03949 Malic enzyme, NAD binding domain DYB08_RS10790 PF01810 LysE type translocator DYB08_RS10795 PF00950 ABC 3 transport family DYB08_RS10800 PF00005 ABC transporter DYB08_RS10820 PF00119 ATP synthase A chain DYB08_RS10825 PF00137 ATP synthase subunit C DYB08_RS10830 PF00430 ATP synthase B/B' CF(0) DYB08_RS10835 PF00213 ATP synthase delta (OSCP) subunit DYB08_RS10840 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYB08_RS10840 PF00306 ATP synthase alpha/beta chain, C terminal domain DYB08_RS10840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYB08_RS10845 PF00231 ATP synthase DYB08_RS10850 PF02874 ATP synthase alpha/beta family, beta-barrel domain DYB08_RS10850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYB08_RS10855 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DYB08_RS10865 PF00255 Glutathione peroxidase DYB08_RS10875 PF07690 Major Facilitator Superfamily DYB08_RS10880 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS10885 PF00892 EamA-like transporter family DYB08_RS10890 PF01300 Telomere recombination DYB08_RS10895 PF17782 DprA winged helix domain DYB08_RS10895 PF02481 DNA recombination-mediator protein A DYB08_RS10905 PF01327 Polypeptide deformylase DYB08_RS10930 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS10965 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS10975 PF03358 NADPH-dependent FMN reductase DYB08_RS10995 PF11842 Domain of unknown function (DUF3362) DYB08_RS10995 PF04055 Radical SAM superfamily DYB08_RS10995 PF08497 Radical SAM N-terminal DYB08_RS11010 PF11798 IMS family HHH motif DYB08_RS11010 PF11799 impB/mucB/samB family C-terminal domain DYB08_RS11010 PF00817 impB/mucB/samB family DYB08_RS11020 PF07690 Major Facilitator Superfamily DYB08_RS11025 PF03641 Possible lysine decarboxylase DYB08_RS11030 PF03471 Transporter associated domain DYB08_RS11030 PF03741 Integral membrane protein TerC family DYB08_RS11035 PF02810 SEC-C motif DYB08_RS11040 PF03458 UPF0126 domain DYB08_RS11045 PF07690 Major Facilitator Superfamily DYB08_RS11050 PF03989 DNA gyrase C-terminal domain, beta-propeller DYB08_RS11050 PF00521 DNA gyrase/topoisomerase IV, subunit A DYB08_RS11055 PF00501 AMP-binding enzyme DYB08_RS11055 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS11070 PF00719 Inorganic pyrophosphatase DYB08_RS11075 PF03573 outer membrane porin, OprD family DYB08_RS11085 PF00701 Dihydrodipicolinate synthetase family DYB08_RS11095 PF00155 Aminotransferase class I and II DYB08_RS11095 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS11100 PF01078 Magnesium chelatase, subunit ChlI DYB08_RS11100 PF13335 Magnesium chelatase, subunit ChlI C-terminal DYB08_RS11120 PF00665 Integrase core domain DYB08_RS11140 PF00582 Universal stress protein family DYB08_RS11145 PF00916 Sulfate permease family DYB08_RS11145 PF01740 STAS domain DYB08_RS11175 PF00589 Phage integrase family DYB08_RS11175 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_RS11200 PF00665 Integrase core domain DYB08_RS11220 PF00809 Pterin binding enzyme DYB08_RS11225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_RS11225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_RS11225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_RS11225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_RS11240 PF00665 Integrase core domain DYB08_RS11270 PF00582 Universal stress protein family DYB08_RS11275 PF01740 STAS domain DYB08_RS11275 PF00916 Sulfate permease family DYB08_RS11285 PF07690 Major Facilitator Superfamily DYB08_RS11290 PF02909 Tetracyclin repressor-like, C-terminal domain DYB08_RS11290 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS11315 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase DYB08_RS11320 PF01636 Phosphotransferase enzyme family DYB08_RS11335 PF01078 Magnesium chelatase, subunit ChlI DYB08_RS11335 PF13335 Magnesium chelatase, subunit ChlI C-terminal DYB08_RS11345 PF00543 Nitrogen regulatory protein P-II DYB08_RS11350 PF00909 Ammonium Transporter Family DYB08_RS11355 PF03477 ATP cone domain DYB08_RS11360 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DYB08_RS11360 PF01872 RibD C-terminal domain DYB08_RS11370 PF00677 Lumazine binding domain DYB08_RS11390 PF02789 Cytosol aminopeptidase family, N-terminal domain DYB08_RS11390 PF00883 Cytosol aminopeptidase family, catalytic domain DYB08_RS11400 PF03739 Lipopolysaccharide export system permease LptF/LptG DYB08_RS11405 PF01676 Metalloenzyme superfamily DYB08_RS11405 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DYB08_RS11410 PF03572 Peptidase family S41 DYB08_RS11410 PF00595 PDZ domain DYB08_RS11415 PF02954 Bacterial regulatory protein, Fis family DYB08_RS11415 PF00158 Sigma-54 interaction domain DYB08_RS11415 PF00072 Response regulator receiver domain DYB08_RS11420 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS11425 PF00072 Response regulator receiver domain DYB08_RS11425 PF00196 Bacterial regulatory proteins, luxR family DYB08_RS11430 PF00768 D-alanyl-D-alanine carboxypeptidase DYB08_RS11435 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS11440 PF03447 Homoserine dehydrogenase, NAD binding domain DYB08_RS11440 PF00742 Homoserine dehydrogenase DYB08_RS11440 PF01842 ACT domain DYB08_RS11445 PF13098 Thioredoxin-like domain DYB08_RS11445 PF10411 Disulfide bond isomerase protein N-terminus DYB08_RS11450 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_RS11450 PF00589 Phage integrase family DYB08_RS11460 PF07664 Ferrous iron transport protein B C terminus DYB08_RS11460 PF07670 Nucleoside recognition DYB08_RS11460 PF02421 Ferrous iron transport protein B DYB08_RS11470 PF08245 Mur ligase middle domain DYB08_RS11470 PF02875 Mur ligase family, glutamate ligase domain DYB08_RS11475 PF01098 Cell cycle protein DYB08_RS11480 PF00749 tRNA synthetases class I (E and Q), catalytic domain DYB08_RS11485 PF01258 Prokaryotic dksA/traR C4-type zinc finger DYB08_RS11490 PF00149 Calcineurin-like phosphoesterase DYB08_RS11495 PF00293 NUDIX domain DYB08_RS11500 PF13667 ThiC-associated domain DYB08_RS11500 PF01964 Radical SAM ThiC family DYB08_RS11515 PF00892 EamA-like transporter family DYB08_RS11520 PF02321 Outer membrane efflux protein DYB08_RS11525 PF01895 PhoU domain DYB08_RS11530 PF04362 Bacterial Fe(2+) trafficking DYB08_RS11535 PF14698 Argininosuccinate lyase C-terminal DYB08_RS11535 PF00206 Lyase DYB08_RS11540 PF07694 5TMR of 5TMR-LYT DYB08_RS11540 PF06580 Histidine kinase DYB08_RS11540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS11545 PF04397 LytTr DNA-binding domain DYB08_RS11545 PF00072 Response regulator receiver domain DYB08_RS11550 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DYB08_RS11550 PF03900 Porphobilinogen deaminase, C-terminal domain DYB08_RS11575 PF00816 H-NS histone family DYB08_RS11590 PF03958 Bacterial type II/III secretion system short domain DYB08_RS11590 PF00263 Bacterial type II and III secretion system protein DYB08_RS11595 PF00498 FHA domain DYB08_RS11595 PF12401 Protein of unknown function (DUF2662) DYB08_RS11600 PF13419 Haloacid dehalogenase-like hydrolase DYB08_RS11605 PF04715 Anthranilate synthase component I, N terminal region DYB08_RS11605 PF00425 chorismate binding enzyme DYB08_RS11630 PF03143 Elongation factor Tu C-terminal domain DYB08_RS11630 PF03144 Elongation factor Tu domain 2 DYB08_RS11630 PF00009 Elongation factor Tu GTP binding domain DYB08_RS11640 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DYB08_RS11645 PF02357 Transcription termination factor nusG DYB08_RS11645 PF00467 KOW motif DYB08_RS11650 PF00298 Ribosomal protein L11, RNA binding domain DYB08_RS11650 PF03946 Ribosomal protein L11, N-terminal domain DYB08_RS11655 PF00687 Ribosomal protein L1p/L10e family DYB08_RS11660 PF00466 Ribosomal protein L10 DYB08_RS11665 PF00542 Ribosomal protein L7/L12 C-terminal domain DYB08_RS11665 PF16320 Ribosomal protein L7/L12 dimerisation domain DYB08_RS11670 PF04563 RNA polymerase beta subunit DYB08_RS11670 PF04561 RNA polymerase Rpb2, domain 2 DYB08_RS11670 PF04565 RNA polymerase Rpb2, domain 3 DYB08_RS11670 PF04560 RNA polymerase Rpb2, domain 7 DYB08_RS11670 PF10385 RNA polymerase beta subunit external 1 domain DYB08_RS11670 PF00562 RNA polymerase Rpb2, domain 6 DYB08_RS11675 PF04998 RNA polymerase Rpb1, domain 5 DYB08_RS11675 PF04983 RNA polymerase Rpb1, domain 3 DYB08_RS11675 PF00623 RNA polymerase Rpb1, domain 2 DYB08_RS11675 PF04997 RNA polymerase Rpb1, domain 1 DYB08_RS11675 PF05000 RNA polymerase Rpb1, domain 4 DYB08_RS11705 PF00561 alpha/beta hydrolase fold DYB08_RS11710 PF03553 Na+/H+ antiporter family DYB08_RS11710 PF13726 Na+-H+ antiporter family DYB08_RS11725 PF00183 Hsp90 protein DYB08_RS11725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS11740 PF01323 DSBA-like thioredoxin domain DYB08_RS11750 PF09278 MerR, DNA binding DYB08_RS11750 PF00376 MerR family regulatory protein DYB08_RS11770 PF00108 Thiolase, N-terminal domain DYB08_RS11770 PF02803 Thiolase, C-terminal domain DYB08_RS11775 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS11775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_RS11775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_RS11800 PF02151 UvrB/uvrC motif DYB08_RS11800 PF08459 UvrC Helix-hairpin-helix N-terminal DYB08_RS11800 PF01541 GIY-YIG catalytic domain DYB08_RS11810 PF01066 CDP-alcohol phosphatidyltransferase DYB08_RS11815 PF12833 Helix-turn-helix domain DYB08_RS11815 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYB08_RS11815 PF02805 Metal binding domain of Ada DYB08_RS11815 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DYB08_RS11840 PF13533 Biotin-lipoyl like DYB08_RS11845 PF03652 Holliday junction resolvase DYB08_RS11850 PF02622 Uncharacterized ACR, COG1678 DYB08_RS11855 PF02463 RecF/RecN/SMC N terminal domain DYB08_RS11865 PF06865 Pyrimidine/purine nucleoside phosphorylase DYB08_RS11870 PF08032 RNA 2'-O ribose methyltransferase substrate binding DYB08_RS11870 PF00588 SpoU rRNA Methylase family DYB08_RS11880 PF01121 Dephospho-CoA kinase DYB08_RS11885 PF01478 Type IV leader peptidase family DYB08_RS11885 PF06750 Bacterial Peptidase A24 N-terminal domain DYB08_RS11890 PF00482 Type II secretion system (T2SS), protein F DYB08_RS11895 PF00437 Type II/IV secretion system protein DYB08_RS11895 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DYB08_RS11900 PF00121 Triosephosphate isomerase DYB08_RS11905 PF03840 Preprotein translocase SecG subunit DYB08_RS11925 PF02576 RimP N-terminal domain DYB08_RS11925 PF17384 RimP C-terminal SH3 domain DYB08_RS11930 PF13184 NusA-like KH domain DYB08_RS11930 PF08529 NusA N-terminal domain DYB08_RS11930 PF00575 S1 RNA binding domain DYB08_RS11935 PF04760 Translation initiation factor IF-2, N-terminal region DYB08_RS11935 PF00009 Elongation factor Tu GTP binding domain DYB08_RS11935 PF11987 Translation-initiation factor 2 DYB08_RS11935 PF08364 Bacterial translation initiation factor IF-2 associated region DYB08_RS11940 PF02033 Ribosome-binding factor A DYB08_RS11945 PF03334 Na+/H+ antiporter subunit DYB08_RS11950 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DYB08_RS11955 PF01899 Na+/H+ ion antiporter subunit DYB08_RS11960 PF00361 Proton-conducting membrane transporter DYB08_RS11965 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DYB08_RS11970 PF00361 Proton-conducting membrane transporter DYB08_RS11970 PF13244 Domain of unknown function (DUF4040) DYB08_RS11970 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DYB08_RS11970 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DYB08_RS11985 PF01502 Phosphoribosyl-AMP cyclohydrolase DYB08_RS11990 PF01494 FAD binding domain DYB08_RS11995 PF03109 ABC1 family DYB08_RS12005 PF01209 ubiE/COQ5 methyltransferase family DYB08_RS12015 PF03976 Polyphosphate kinase 2 (PPK2) DYB08_RS12025 PF17946 RecC C-terminal domain DYB08_RS12030 PF12705 PD-(D/E)XK nuclease superfamily DYB08_RS12030 PF00580 UvrD/REP helicase N-terminal domain DYB08_RS12030 PF13361 UvrD-like helicase C-terminal domain DYB08_RS12035 PF13538 UvrD-like helicase C-terminal domain DYB08_RS12040 PF00144 Beta-lactamase DYB08_RS12045 PF00312 Ribosomal protein S15 DYB08_RS12050 PF03725 3' exoribonuclease family, domain 2 DYB08_RS12050 PF00013 KH domain DYB08_RS12050 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DYB08_RS12050 PF01138 3' exoribonuclease family, domain 1 DYB08_RS12050 PF00575 S1 RNA binding domain DYB08_RS12055 PF01544 CorA-like Mg2+ transporter protein DYB08_RS12065 PF00226 DnaJ domain DYB08_RS12065 PF01556 DnaJ C terminal domain DYB08_RS12075 PF01430 Hsp33 protein DYB08_RS12080 PF02254 TrkA-N domain DYB08_RS12080 PF00999 Sodium/hydrogen exchanger family DYB08_RS12085 PF17764 3′ DNA-binding domain (3′BD) DYB08_RS12085 PF00270 DEAD/DEAH box helicase DYB08_RS12085 PF00271 Helicase conserved C-terminal domain DYB08_RS12085 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DYB08_RS12085 PF18074 Primosomal protein N C-terminal domain DYB08_RS12090 PF00482 Type II secretion system (T2SS), protein F DYB08_RS12095 PF07963 Prokaryotic N-terminal methylation motif DYB08_RS12095 PF08334 Type II secretion system (T2SS), protein G DYB08_RS12110 PF01588 Putative tRNA binding domain DYB08_RS12115 PF00795 Carbon-nitrogen hydrolase DYB08_RS12120 PF00571 CBS domain DYB08_RS12120 PF03471 Transporter associated domain DYB08_RS12125 PF01206 Sulfurtransferase TusA DYB08_RS12140 PF01177 Asp/Glu/Hydantoin racemase DYB08_RS12150 PF00762 Ferrochelatase DYB08_RS12155 PF00753 Metallo-beta-lactamase superfamily DYB08_RS12160 PF03884 DNA gyrase inhibitor YacG DYB08_RS12180 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DYB08_RS12195 PF01197 Ribosomal protein L31 DYB08_RS12200 PF03109 ABC1 family DYB08_RS12205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS12205 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS12210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS12210 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS12210 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS12215 PF01554 MatE DYB08_RS12225 PF06969 HemN C-terminal domain DYB08_RS12225 PF04055 Radical SAM superfamily DYB08_RS12230 PF00106 short chain dehydrogenase DYB08_RS12235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS12235 PF03466 LysR substrate binding domain DYB08_RS12250 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS12250 PF00501 AMP-binding enzyme DYB08_RS12255 PF00575 S1 RNA binding domain DYB08_RS12255 PF10150 Ribonuclease E/G family DYB08_RS12255 PF12111 Polyribonucleotide phosphorylase C terminal DYB08_RS12265 PF01479 S4 domain DYB08_RS12265 PF00849 RNA pseudouridylate synthase DYB08_RS12270 PF13419 Haloacid dehalogenase-like hydrolase DYB08_RS12275 PF13280 WYL domain DYB08_RS12275 PF08279 HTH domain DYB08_RS12280 PF02798 Glutathione S-transferase, N-terminal domain DYB08_RS12290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS12290 PF03466 LysR substrate binding domain DYB08_RS12295 PF12706 Beta-lactamase superfamily domain DYB08_RS12300 PF00141 Peroxidase DYB08_RS12305 PF01590 GAF domain DYB08_RS12305 PF00391 PEP-utilising enzyme, mobile domain DYB08_RS12305 PF05524 PEP-utilising enzyme, N-terminal DYB08_RS12305 PF02896 PEP-utilising enzyme, TIM barrel domain DYB08_RS12310 PF00293 NUDIX domain DYB08_RS12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS12330 PF03466 LysR substrate binding domain DYB08_RS12340 PF00330 Aconitase family (aconitate hydratase) DYB08_RS12345 PF00694 Aconitase C-terminal domain DYB08_RS12355 PF00180 Isocitrate/isopropylmalate dehydrogenase DYB08_RS12370 PF01176 Translation initiation factor 1A / IF-1 DYB08_RS12380 PF01416 tRNA pseudouridine synthase DYB08_RS12400 PF01118 Semialdehyde dehydrogenase, NAD binding domain DYB08_RS12400 PF02774 Semialdehyde dehydrogenase, dimerisation domain DYB08_RS12410 PF00375 Sodium:dicarboxylate symporter family DYB08_RS12420 PF03279 Bacterial lipid A biosynthesis acyltransferase DYB08_RS12425 PF01810 LysE type translocator DYB08_RS12430 PF12848 ABC transporter DYB08_RS12430 PF16326 ABC transporter C-terminal domain DYB08_RS12430 PF00005 ABC transporter DYB08_RS12435 PF04102 SlyX DYB08_RS12440 PF00107 Zinc-binding dehydrogenase DYB08_RS12440 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS12445 PF01638 HxlR-like helix-turn-helix DYB08_RS12455 PF01131 DNA topoisomerase DYB08_RS12455 PF08272 Topoisomerase I zinc-ribbon-like DYB08_RS12455 PF01751 Toprim domain DYB08_RS12455 PF01396 Topoisomerase DNA binding C4 zinc finger DYB08_RS12470 PF13361 UvrD-like helicase C-terminal domain DYB08_RS12470 PF00580 UvrD/REP helicase N-terminal domain DYB08_RS12475 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) DYB08_RS12495 PF00999 Sodium/hydrogen exchanger family DYB08_RS12495 PF02254 TrkA-N domain DYB08_RS12500 PF00471 Ribosomal protein L33 DYB08_RS12505 PF00830 Ribosomal L28 family DYB08_RS12510 PF00171 Aldehyde dehydrogenase family DYB08_RS12520 PF00551 Formyl transferase DYB08_RS12520 PF01842 ACT domain DYB08_RS12530 PF01618 MotA/TolQ/ExbB proton channel family DYB08_RS12540 PF01625 Peptide methionine sulfoxide reductase DYB08_RS12550 PF00186 Dihydrofolate reductase DYB08_RS12555 PF00303 Thymidylate synthase DYB08_RS12570 PF01790 Prolipoprotein diacylglyceryl transferase DYB08_RS12590 PF00902 Sec-independent protein translocase protein (TatC) DYB08_RS12595 PF02416 mttA/Hcf106 family DYB08_RS12600 PF02416 mttA/Hcf106 family DYB08_RS12610 PF01725 Ham1 family DYB08_RS12620 PF00561 alpha/beta hydrolase fold DYB08_RS12620 PF07021 Methionine biosynthesis protein MetW DYB08_RS12625 PF00561 alpha/beta hydrolase fold DYB08_RS12630 PF08502 LeuA allosteric (dimerisation) domain DYB08_RS12630 PF00682 HMGL-like DYB08_RS12635 PF13640 2OG-Fe(II) oxygenase superfamily DYB08_RS12635 PF18331 PKHD-type hydroxylase C-terminal domain DYB08_RS12640 PF00593 TonB dependent receptor DYB08_RS12640 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS12645 PF05698 Bacterial trigger factor protein (TF) C-terminus DYB08_RS12645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_RS12645 PF05697 Bacterial trigger factor protein (TF) DYB08_RS12650 PF00574 Clp protease DYB08_RS12655 PF06689 ClpX C4-type zinc finger DYB08_RS12655 PF07724 AAA domain (Cdc48 subfamily) DYB08_RS12655 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_RS12670 PF05683 Fumarase C-terminus DYB08_RS12670 PF05681 Fumarate hydratase (Fumerase) DYB08_RS12675 PF07085 DRTGG domain DYB08_RS12675 PF01515 Phosphate acetyl/butaryl transferase DYB08_RS12680 PF00871 Acetokinase family DYB08_RS12690 PF00920 Dehydratase family DYB08_RS12695 PF01081 KDPG and KHG aldolase DYB08_RS12700 PF02447 GntP family permease DYB08_RS12705 PF01202 Shikimate kinase DYB08_RS12710 PF00171 Aldehyde dehydrogenase family DYB08_RS12715 PF00171 Aldehyde dehydrogenase family DYB08_RS12720 PF00561 alpha/beta hydrolase fold DYB08_RS12730 PF00933 Glycosyl hydrolase family 3 N terminal domain DYB08_RS12735 PF11818 C-terminal domain of tail specific protease (DUF3340) DYB08_RS12735 PF17804 Tail specific protease N-terminal domain DYB08_RS12735 PF03572 Peptidase family S41 DYB08_RS12735 PF00595 PDZ domain DYB08_RS12740 PF13439 Glycosyltransferase Family 4 DYB08_RS12740 PF00534 Glycosyl transferases group 1 DYB08_RS12745 PF01569 PAP2 superfamily DYB08_RS12750 PF04384 Iron-sulphur cluster assembly DYB08_RS12755 PF00334 Nucleoside diphosphate kinase DYB08_RS12760 PF04055 Radical SAM superfamily DYB08_RS12770 PF13464 Domain of unknown function (DUF4115) DYB08_RS12775 PF04551 GcpE protein DYB08_RS12780 PF03129 Anticodon binding domain DYB08_RS12780 PF13393 Histidyl-tRNA synthetase DYB08_RS12790 PF13360 PQQ-like domain DYB08_RS12795 PF01926 50S ribosome-binding GTPase DYB08_RS12795 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DYB08_RS12810 PF00550 Phosphopantetheine attachment site DYB08_RS12815 PF00550 Phosphopantetheine attachment site DYB08_RS12825 PF00501 AMP-binding enzyme DYB08_RS12825 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS12840 PF00221 Aromatic amino acid lyase DYB08_RS12870 PF04820 Tryptophan halogenase DYB08_RS12880 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_RS12880 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_RS12895 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_RS12895 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_RS12910 PF02556 Preprotein translocase subunit SecB DYB08_RS12915 PF00462 Glutaredoxin DYB08_RS12925 PF03193 RsgA GTPase DYB08_RS12930 PF00929 Exonuclease DYB08_RS12945 PF02321 Outer membrane efflux protein DYB08_RS12950 PF12704 MacB-like periplasmic core domain DYB08_RS12950 PF00005 ABC transporter DYB08_RS12950 PF02687 FtsX-like permease family DYB08_RS12980 PF00133 tRNA synthetases class I (I, L, M and V) DYB08_RS12980 PF08264 Anticodon-binding domain of tRNA DYB08_RS12980 PF09334 tRNA synthetases class I (M) DYB08_RS12980 PF13603 Leucyl-tRNA synthetase, Domain 2 DYB08_RS12990 PF00205 Thiamine pyrophosphate enzyme, central domain DYB08_RS12990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYB08_RS12990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYB08_RS12995 PF10369 Small subunit of acetolactate synthase DYB08_RS13000 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DYB08_RS13000 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DYB08_RS13005 PF03707 Bacterial signalling protein N terminal repeat DYB08_RS13005 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS13005 PF00563 EAL domain DYB08_RS13035 PF16658 Class II release factor RF3, C-terminal domain DYB08_RS13035 PF00009 Elongation factor Tu GTP binding domain DYB08_RS13035 PF03144 Elongation factor Tu domain 2 DYB08_RS13050 PF01026 TatD related DNase DYB08_RS13055 PF00330 Aconitase family (aconitate hydratase) DYB08_RS13055 PF00694 Aconitase C-terminal domain DYB08_RS13065 PF00899 ThiF family DYB08_RS13075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS13075 PF03466 LysR substrate binding domain DYB08_RS13085 PF01207 Dihydrouridine synthase (Dus) DYB08_RS13090 PF07690 Major Facilitator Superfamily DYB08_RS13100 PF00892 EamA-like transporter family DYB08_RS13105 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DYB08_RS13105 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DYB08_RS13110 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DYB08_RS13115 PF02233 NAD(P) transhydrogenase beta subunit DYB08_RS13120 PF00106 short chain dehydrogenase DYB08_RS13130 PF01261 Xylose isomerase-like TIM barrel DYB08_RS13135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DYB08_RS13135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DYB08_RS13140 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS13145 PF00072 Response regulator receiver domain DYB08_RS13145 PF00672 HAMP domain DYB08_RS13145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS13145 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS13145 PF01627 Hpt domain DYB08_RS13145 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DYB08_RS13150 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS13160 PF05958 tRNA (Uracil-5-)-methyltransferase DYB08_RS13165 PF02824 TGS domain DYB08_RS13165 PF04607 Region found in RelA / SpoT proteins DYB08_RS13165 PF13291 ACT domain DYB08_RS13175 PF03819 MazG nucleotide pyrophosphohydrolase domain DYB08_RS13185 PF01743 Poly A polymerase head domain DYB08_RS13185 PF12626 Polymerase A arginine-rich C-terminus DYB08_RS13185 PF12627 Probable RNA and SrmB- binding site of polymerase A DYB08_RS13190 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DYB08_RS13195 PF02548 Ketopantoate hydroxymethyltransferase DYB08_RS13200 PF02569 Pantoate-beta-alanine ligase DYB08_RS13205 PF03668 P-loop ATPase protein family DYB08_RS13210 PF00381 PTS HPr component phosphorylation site DYB08_RS13215 PF04751 Protein of unknown function (DUF615) DYB08_RS13220 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS13220 PF00501 AMP-binding enzyme DYB08_RS13225 PF02824 TGS domain DYB08_RS13225 PF03129 Anticodon binding domain DYB08_RS13225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYB08_RS13225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DYB08_RS13230 PF05198 Translation initiation factor IF-3, N-terminal domain DYB08_RS13230 PF00707 Translation initiation factor IF-3, C-terminal domain DYB08_RS13240 PF00043 Glutathione S-transferase, C-terminal domain DYB08_RS13240 PF02798 Glutathione S-transferase, N-terminal domain DYB08_RS13245 PF09335 SNARE associated Golgi protein DYB08_RS13250 PF07690 Major Facilitator Superfamily DYB08_RS13255 PF01632 Ribosomal protein L35 DYB08_RS13260 PF00453 Ribosomal protein L20 DYB08_RS13280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DYB08_RS13280 PF01409 tRNA synthetases class II core domain (F) DYB08_RS13285 PF03147 Ferredoxin-fold anticodon binding domain DYB08_RS13285 PF01588 Putative tRNA binding domain DYB08_RS13285 PF03484 tRNA synthetase B5 domain DYB08_RS13285 PF03483 B3/4 domain DYB08_RS13285 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DYB08_RS13290 PF00216 Bacterial DNA-binding protein DYB08_RS13305 PF07497 Rho termination factor, RNA-binding domain DYB08_RS13305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DYB08_RS13305 PF07498 Rho termination factor, N-terminal domain DYB08_RS13310 PF00085 Thioredoxin DYB08_RS13315 PF02541 Ppx/GppA phosphatase family DYB08_RS13320 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DYB08_RS13325 PF09179 TilS substrate binding domain DYB08_RS13325 PF01171 PP-loop family DYB08_RS13325 PF11734 TilS substrate C-terminal domain DYB08_RS13330 PF03807 NADP oxidoreductase coenzyme F420-dependent DYB08_RS13330 PF14748 Pyrroline-5-carboxylate reductase dimerisation DYB08_RS13335 PF02325 YGGT family DYB08_RS13340 PF01612 3'-5' exonuclease DYB08_RS13340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DYB08_RS13340 PF01367 5'-3' exonuclease, C-terminal SAM fold DYB08_RS13340 PF00476 DNA polymerase family A DYB08_RS13360 PF00437 Type II/IV secretion system protein DYB08_RS13365 PF02566 OsmC-like protein DYB08_RS13370 PF01047 MarR family DYB08_RS13380 PF00795 Carbon-nitrogen hydrolase DYB08_RS13425 PF00309 Sigma-54 factor, Activator interacting domain (AID) DYB08_RS13425 PF04963 Sigma-54 factor, core binding domain DYB08_RS13425 PF04552 Sigma-54, DNA binding domain DYB08_RS13430 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DYB08_RS13435 PF01722 BolA-like protein DYB08_RS13440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DYB08_RS13445 PF01634 ATP phosphoribosyltransferase DYB08_RS13450 PF00815 Histidinol dehydrogenase DYB08_RS13455 PF00155 Aminotransferase class I and II DYB08_RS13460 PF00425 chorismate binding enzyme DYB08_RS13460 PF04715 Anthranilate synthase component I, N terminal region DYB08_RS13500 PF00293 NUDIX domain DYB08_RS13510 PF00814 Glycoprotease family DYB08_RS13515 PF04445 Putative SAM-dependent methyltransferase DYB08_RS13525 PF00756 Putative esterase DYB08_RS13535 PF00834 Ribulose-phosphate 3 epimerase family DYB08_RS13550 PF00394 Multicopper oxidase DYB08_RS13550 PF07732 Multicopper oxidase DYB08_RS13550 PF07731 Multicopper oxidase DYB08_RS13555 PF05275 Copper resistance protein B precursor (CopB) DYB08_RS13565 PF00893 Small Multidrug Resistance protein DYB08_RS13570 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DYB08_RS13570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DYB08_RS13575 PF01960 ArgJ family DYB08_RS13580 PF02445 Quinolinate synthetase A protein DYB08_RS13605 PF00962 Adenosine/AMP deaminase DYB08_RS13610 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS13610 PF00107 Zinc-binding dehydrogenase DYB08_RS13615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS13615 PF03466 LysR substrate binding domain DYB08_RS13620 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS13620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS13620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS13630 PF07690 Major Facilitator Superfamily DYB08_RS13635 PF02515 CoA-transferase family III DYB08_RS13645 PF14537 Cytochrome c3 DYB08_RS13645 PF00890 FAD binding domain DYB08_RS13650 PF03466 LysR substrate binding domain DYB08_RS13650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS13660 PF07690 Major Facilitator Superfamily DYB08_RS13675 PF03466 LysR substrate binding domain DYB08_RS13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS13685 PF01546 Peptidase family M20/M25/M40 DYB08_RS13685 PF07687 Peptidase dimerisation domain DYB08_RS13690 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DYB08_RS13690 PF12833 Helix-turn-helix domain DYB08_RS13700 PF01810 LysE type translocator DYB08_RS13705 PF03466 LysR substrate binding domain DYB08_RS13705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS13715 PF08267 Cobalamin-independent synthase, N-terminal domain DYB08_RS13715 PF01717 Cobalamin-independent synthase, Catalytic domain DYB08_RS13720 PF01613 Flavin reductase like domain DYB08_RS13750 PF02567 Phenazine biosynthesis-like protein DYB08_RS13770 PF13360 PQQ-like domain DYB08_RS13770 PF01011 PQQ enzyme repeat DYB08_RS13855 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS13855 PF13755 Sensor N-terminal transmembrane domain DYB08_RS13855 PF13756 Stimulus-sensing domain DYB08_RS13855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS13855 PF00672 HAMP domain DYB08_RS13865 PF00268 Ribonucleotide reductase, small chain DYB08_RS13875 PF00317 Ribonucleotide reductase, all-alpha domain DYB08_RS13875 PF02867 Ribonucleotide reductase, barrel domain DYB08_RS13875 PF03477 ATP cone domain DYB08_RS13885 PF00072 Response regulator receiver domain DYB08_RS13885 PF00486 Transcriptional regulatory protein, C terminal DYB08_RS13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS13890 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS13890 PF00672 HAMP domain DYB08_RS13900 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS13900 PF17151 Periplasmic sensor domain DYB08_RS13905 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DYB08_RS13910 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DYB08_RS13915 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DYB08_RS13915 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DYB08_RS13925 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DYB08_RS13925 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DYB08_RS13925 PF10531 SLBB domain DYB08_RS13930 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DYB08_RS13930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DYB08_RS13930 PF00384 Molybdopterin oxidoreductase DYB08_RS13935 PF00146 NADH dehydrogenase DYB08_RS13940 PF12838 4Fe-4S dicluster domain DYB08_RS13945 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DYB08_RS13950 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DYB08_RS13955 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DYB08_RS13955 PF00361 Proton-conducting membrane transporter DYB08_RS13960 PF00361 Proton-conducting membrane transporter DYB08_RS13965 PF00361 Proton-conducting membrane transporter DYB08_RS13975 PF00313 'Cold-shock' DNA-binding domain DYB08_RS13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS13980 PF03466 LysR substrate binding domain DYB08_RS13985 PF00970 Oxidoreductase FAD-binding domain DYB08_RS13985 PF00175 Oxidoreductase NAD-binding domain DYB08_RS14000 PF05552 Conserved TM helix DYB08_RS14015 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS14020 PF13533 Biotin-lipoyl like DYB08_RS14045 PF01588 Putative tRNA binding domain DYB08_RS14045 PF09334 tRNA synthetases class I (M) DYB08_RS14055 PF10609 NUBPL iron-transfer P-loop NTPase DYB08_RS14065 PF01048 Phosphorylase superfamily DYB08_RS14080 PF00692 dUTPase DYB08_RS14115 PF01207 Dihydrouridine synthase (Dus) DYB08_RS14125 PF02978 Signal peptide binding domain DYB08_RS14125 PF00448 SRP54-type protein, GTPase domain DYB08_RS14125 PF02881 SRP54-type protein, helical bundle domain DYB08_RS14130 PF03309 Type III pantothenate kinase DYB08_RS14140 PF01925 Sulfite exporter TauE/SafE DYB08_RS14150 PF06470 SMC proteins Flexible Hinge Domain DYB08_RS14150 PF02463 RecF/RecN/SMC N terminal domain DYB08_RS14160 PF00533 BRCA1 C Terminus (BRCT) domain DYB08_RS14160 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DYB08_RS14160 PF03120 NAD-dependent DNA ligase OB-fold domain DYB08_RS14160 PF12826 Helix-hairpin-helix motif DYB08_RS14160 PF01653 NAD-dependent DNA ligase adenylation domain DYB08_RS14165 PF00210 Ferritin-like domain DYB08_RS14170 PF07690 Major Facilitator Superfamily DYB08_RS14175 PF00982 Glycosyltransferase family 20 DYB08_RS14180 PF02358 Trehalose-phosphatase DYB08_RS14185 PF12697 Alpha/beta hydrolase family DYB08_RS14185 PF08241 Methyltransferase domain DYB08_RS14190 PF00202 Aminotransferase class-III DYB08_RS14190 PF06968 Biotin and Thiamin Synthesis associated domain DYB08_RS14190 PF04055 Radical SAM superfamily DYB08_RS14195 PF00155 Aminotransferase class I and II DYB08_RS14210 PF01479 S4 domain DYB08_RS14210 PF00849 RNA pseudouridylate synthase DYB08_RS14215 PF04079 Segregation and condensation complex subunit ScpB DYB08_RS14220 PF02616 Segregation and condensation protein ScpA DYB08_RS14225 PF01300 Telomere recombination DYB08_RS14230 PF04315 Elongation factor P hydroxylase DYB08_RS14235 PF02620 Large ribosomal RNA subunit accumulation protein YceD DYB08_RS14240 PF01783 Ribosomal L32p protein family DYB08_RS14245 PF00698 Acyl transferase domain DYB08_RS14255 PF00550 Phosphopantetheine attachment site DYB08_RS14260 PF04972 BON domain DYB08_RS14260 PF01476 LysM domain DYB08_RS14265 PF08543 Phosphomethylpyrimidine kinase DYB08_RS14265 PF02581 Thiamine monophosphate synthase DYB08_RS14265 PF03070 TENA/THI-4/PQQC family DYB08_RS14275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DYB08_RS14290 PF02261 Aspartate decarboxylase DYB08_RS14295 PF01195 Peptidyl-tRNA hydrolase DYB08_RS14300 PF01386 Ribosomal L25p family DYB08_RS14305 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DYB08_RS14305 PF14572 Phosphoribosyl synthetase-associated domain DYB08_RS14330 PF08544 GHMP kinases C terminal DYB08_RS14330 PF00288 GHMP kinases N terminal domain DYB08_RS14335 PF03550 Outer membrane lipoprotein LolB DYB08_RS14345 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DYB08_RS14345 PF01488 Shikimate / quinate 5-dehydrogenase DYB08_RS14345 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DYB08_RS14350 PF10410 DnaB-helicase binding domain of primase DYB08_RS14350 PF08278 DNA primase DnaG DnaB-binding DYB08_RS14350 PF08275 DNA primase catalytic core, N-terminal domain DYB08_RS14350 PF01807 CHC2 zinc finger DYB08_RS14355 PF13525 Outer membrane lipoprotein DYB08_RS14360 PF01479 S4 domain DYB08_RS14360 PF00849 RNA pseudouridylate synthase DYB08_RS14365 PF02578 Multi-copper polyphenol oxidoreductase laccase DYB08_RS14370 PF03358 NADPH-dependent FMN reductase DYB08_RS14375 PF01668 SmpB protein DYB08_RS14380 PF01467 Cytidylyltransferase-like DYB08_RS14385 PF00037 4Fe-4S binding domain DYB08_RS14405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS14405 PF03466 LysR substrate binding domain DYB08_RS14410 PF00180 Isocitrate/isopropylmalate dehydrogenase DYB08_RS14425 PF00970 Oxidoreductase FAD-binding domain DYB08_RS14425 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS14425 PF00175 Oxidoreductase NAD-binding domain DYB08_RS14440 PF00795 Carbon-nitrogen hydrolase DYB08_RS14440 PF02540 NAD synthase DYB08_RS14450 PF05726 Pirin C-terminal cupin domain DYB08_RS14450 PF02678 Pirin DYB08_RS14455 PF03653 Uncharacterised protein family (UPF0093) DYB08_RS14460 PF00109 Beta-ketoacyl synthase, N-terminal domain DYB08_RS14460 PF02801 Beta-ketoacyl synthase, C-terminal domain DYB08_RS14470 PF00164 Ribosomal protein S12/S23 DYB08_RS14475 PF00177 Ribosomal protein S7p/S5e DYB08_RS14480 PF03764 Elongation factor G, domain IV DYB08_RS14480 PF00009 Elongation factor Tu GTP binding domain DYB08_RS14480 PF00679 Elongation factor G C-terminus DYB08_RS14480 PF03144 Elongation factor Tu domain 2 DYB08_RS14480 PF14492 Elongation Factor G, domain II DYB08_RS14485 PF03144 Elongation factor Tu domain 2 DYB08_RS14485 PF03143 Elongation factor Tu C-terminal domain DYB08_RS14485 PF00009 Elongation factor Tu GTP binding domain DYB08_RS14500 PF00583 Acetyltransferase (GNAT) family DYB08_RS14505 PF04376 Arginine-tRNA-protein transferase, N terminus DYB08_RS14505 PF04377 Arginine-tRNA-protein transferase, C terminus DYB08_RS14510 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DYB08_RS14515 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS14520 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DYB08_RS14520 PF01580 FtsK/SpoIIIE family DYB08_RS14520 PF09397 Ftsk gamma domain DYB08_RS14520 PF17854 FtsK alpha domain DYB08_RS14525 PF01810 LysE type translocator DYB08_RS14545 PF03776 Septum formation topological specificity factor MinE DYB08_RS14550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DYB08_RS14555 PF03775 Septum formation inhibitor MinC, C-terminal domain DYB08_RS14565 PF01553 Acyltransferase DYB08_RS14570 PF00691 OmpA family DYB08_RS14570 PF13488 Glycine zipper DYB08_RS14575 PF13361 UvrD-like helicase C-terminal domain DYB08_RS14575 PF00580 UvrD/REP helicase N-terminal domain DYB08_RS14580 PF00692 dUTPase DYB08_RS14585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DYB08_RS14585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DYB08_RS14585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DYB08_RS14585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DYB08_RS14590 PF00696 Amino acid kinase family DYB08_RS14600 PF13230 Glutamine amidotransferases class-II DYB08_RS14605 PF01814 Hemerythrin HHE cation binding domain DYB08_RS14620 PF03658 RnfH family Ubiquitin DYB08_RS14625 PF04355 SmpA / OmlA family DYB08_RS14630 PF01475 Ferric uptake regulator family DYB08_RS14635 PF00437 Type II/IV secretion system protein DYB08_RS14640 PF00437 Type II/IV secretion system protein DYB08_RS14645 PF01168 Alanine racemase, N-terminal domain DYB08_RS14655 PF00149 Calcineurin-like phosphoesterase DYB08_RS14655 PF12320 Type 5 capsule protein repressor C-terminal domain DYB08_RS14675 PF08338 Domain of unknown function (DUF1731) DYB08_RS14675 PF01370 NAD dependent epimerase/dehydratase family DYB08_RS14680 PF01266 FAD dependent oxidoreductase DYB08_RS14685 PF00490 Delta-aminolevulinic acid dehydratase DYB08_RS14690 PF03061 Thioesterase superfamily DYB08_RS14695 PF13533 Biotin-lipoyl like DYB08_RS14700 PF07690 Major Facilitator Superfamily DYB08_RS14770 PF00929 Exonuclease DYB08_RS14850 PF00145 C-5 cytosine-specific DNA methylase DYB08_RS14860 PF01695 IstB-like ATP binding protein DYB08_RS15055 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DYB08_RS15095 PF02768 DNA polymerase III beta subunit, C-terminal domain DYB08_RS15095 PF00712 DNA polymerase III beta subunit, N-terminal domain DYB08_RS15095 PF02767 DNA polymerase III beta subunit, central domain DYB08_RS15235 PF00083 Sugar (and other) transporter DYB08_RS15240 PF00701 Dihydrodipicolinate synthetase family DYB08_RS15250 PF04542 Sigma-70 region 2 DYB08_RS15250 PF08281 Sigma-70, region 4 DYB08_RS15260 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS15260 PF00593 TonB dependent receptor DYB08_RS15270 PF04575 Protein of unknown function (DUF560) DYB08_RS15280 PF01126 Heme oxygenase DYB08_RS15305 PF13520 Amino acid permease DYB08_RS15310 PF02574 Homocysteine S-methyltransferase DYB08_RS15320 PF06039 Malate:quinone oxidoreductase (Mqo) DYB08_RS15325 PF05199 GMC oxidoreductase DYB08_RS15325 PF00732 GMC oxidoreductase DYB08_RS15330 PF00171 Aldehyde dehydrogenase family DYB08_RS15335 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS15335 PF13977 BetI-type transcriptional repressor, C-terminal DYB08_RS15340 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_RS15345 PF02028 BCCT, betaine/carnitine/choline family transporter DYB08_RS15355 PF03061 Thioesterase superfamily DYB08_RS15365 PF07683 Cobalamin synthesis protein cobW C-terminal domain DYB08_RS15365 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYB08_RS15370 PF00375 Sodium:dicarboxylate symporter family DYB08_RS15375 PF07152 YaeQ protein DYB08_RS15380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DYB08_RS15385 PF14883 Hypothetical glycosyl hydrolase family 13 DYB08_RS15385 PF01522 Polysaccharide deacetylase DYB08_RS15390 PF00535 Glycosyl transferase family 2 DYB08_RS15400 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS15415 PF01614 Bacterial transcriptional regulator DYB08_RS15415 PF09339 IclR helix-turn-helix domain DYB08_RS15420 PF00355 Rieske [2Fe-2S] domain DYB08_RS15430 PF00355 Rieske [2Fe-2S] domain DYB08_RS15440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DYB08_RS15445 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS15445 PF14759 Reductase C-terminal DYB08_RS15450 PF07690 Major Facilitator Superfamily DYB08_RS15460 PF12697 Alpha/beta hydrolase family DYB08_RS15470 PF01958 Domain of unknown function DUF108 DYB08_RS15470 PF03447 Homoserine dehydrogenase, NAD binding domain DYB08_RS15475 PF00171 Aldehyde dehydrogenase family DYB08_RS15480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DYB08_RS15480 PF00205 Thiamine pyrophosphate enzyme, central domain DYB08_RS15480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DYB08_RS15490 PF07690 Major Facilitator Superfamily DYB08_RS15495 PF01327 Polypeptide deformylase DYB08_RS15500 PF04960 Glutaminase DYB08_RS15505 PF12833 Helix-turn-helix domain DYB08_RS15505 PF02311 AraC-like ligand binding domain DYB08_RS15510 PF07690 Major Facilitator Superfamily DYB08_RS15515 PF01263 Aldose 1-epimerase DYB08_RS15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS15530 PF03466 LysR substrate binding domain DYB08_RS15540 PF07690 Major Facilitator Superfamily DYB08_RS15545 PF00456 Transketolase, thiamine diphosphate binding domain DYB08_RS15550 PF02779 Transketolase, pyrimidine binding domain DYB08_RS15550 PF02780 Transketolase, C-terminal domain DYB08_RS15555 PF02607 B12 binding domain DYB08_RS15555 PF02310 B12 binding domain DYB08_RS15555 PF02965 Vitamin B12 dependent methionine synthase, activation domain DYB08_RS15555 PF00809 Pterin binding enzyme DYB08_RS15555 PF02574 Homocysteine S-methyltransferase DYB08_RS15560 PF01384 Phosphate transporter family DYB08_RS15565 PF00291 Pyridoxal-phosphate dependent enzyme DYB08_RS15580 PF03781 Sulfatase-modifying factor enzyme 1 DYB08_RS15585 PF00884 Sulfatase DYB08_RS15595 PF01521 Iron-sulphur cluster biosynthesis DYB08_RS15595 PF01106 NifU-like domain DYB08_RS15600 PF00593 TonB dependent receptor DYB08_RS15600 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS15610 PF00561 alpha/beta hydrolase fold DYB08_RS15615 PF00484 Carbonic anhydrase DYB08_RS15620 PF13472 GDSL-like Lipase/Acylhydrolase family DYB08_RS15625 PF00005 ABC transporter DYB08_RS15635 PF01694 Rhomboid family DYB08_RS15640 PF00912 Transglycosylase DYB08_RS15645 PF02503 Polyphosphate kinase middle domain DYB08_RS15645 PF13090 Polyphosphate kinase C-terminal domain 2 DYB08_RS15645 PF17941 Polyphosphate kinase C-terminal domain 1 DYB08_RS15645 PF13089 Polyphosphate kinase N-terminal domain DYB08_RS15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS15655 PF03466 LysR substrate binding domain DYB08_RS15660 PF00561 alpha/beta hydrolase fold DYB08_RS15665 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS15665 PF18113 Rubredoxin binding C-terminal domain DYB08_RS15670 PF00301 Rubredoxin DYB08_RS15685 PF00152 tRNA synthetases class II (D, K and N) DYB08_RS15685 PF01336 OB-fold nucleic acid binding domain DYB08_RS15690 PF14052 Capsule assembly protein Wzi DYB08_RS15700 PF01507 Phosphoadenosine phosphosulfate reductase family DYB08_RS15705 PF00009 Elongation factor Tu GTP binding domain DYB08_RS15720 PF03600 Citrate transporter DYB08_RS15730 PF03471 Transporter associated domain DYB08_RS15730 PF01595 Cyclin M transmembrane N-terminal domain DYB08_RS15730 PF00571 CBS domain DYB08_RS15735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS15735 PF03466 LysR substrate binding domain DYB08_RS15740 PF00463 Isocitrate lyase family DYB08_RS15755 PF01774 UreD urease accessory protein DYB08_RS15760 PF00547 Urease, gamma subunit DYB08_RS15765 PF00699 Urease beta subunit DYB08_RS15770 PF00449 Urease alpha-subunit, N-terminal domain DYB08_RS15770 PF01979 Amidohydrolase family DYB08_RS15775 PF05194 UreE urease accessory protein, C-terminal domain DYB08_RS15775 PF02814 UreE urease accessory protein, N-terminal domain DYB08_RS15780 PF01730 UreF DYB08_RS15785 PF02492 CobW/HypB/UreG, nucleotide-binding domain DYB08_RS15800 PF03717 Penicillin-binding Protein dimerisation domain DYB08_RS15800 PF00905 Penicillin binding protein transpeptidase domain DYB08_RS15815 PF05191 Adenylate kinase, active site lid DYB08_RS15825 PF10576 Iron-sulfur binding domain of endonuclease III DYB08_RS15825 PF00730 HhH-GPD superfamily base excision DNA repair protein DYB08_RS15825 PF00633 Helix-hairpin-helix motif DYB08_RS15830 PF04060 Putative Fe-S cluster DYB08_RS15835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DYB08_RS15835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DYB08_RS15845 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DYB08_RS15850 PF02590 Predicted SPOUT methyltransferase DYB08_RS15860 PF05362 Lon protease (S16) C-terminal proteolytic domain DYB08_RS15860 PF02190 ATP-dependent protease La (LON) substrate-binding domain DYB08_RS15860 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_RS15865 PF05662 Coiled stalk of trimeric autotransporter adhesin DYB08_RS15865 PF03895 YadA-like membrane anchor domain DYB08_RS15865 PF05658 Head domain of trimeric autotransporter adhesin DYB08_RS15865 PF13018 Extended Signal Peptide of Type V secretion system DYB08_RS15870 PF04355 SmpA / OmlA family DYB08_RS15870 PF00691 OmpA family DYB08_RS15875 PF01812 5-formyltetrahydrofolate cyclo-ligase family DYB08_RS16200 PF01551 Peptidase family M23 DYB08_RS16200 PF08525 Opacity-associated protein A N-terminal motif DYB08_RS16200 PF01476 LysM domain DYB08_RS16255 PF08019 Phosphoethanolamine transferase EptA/EptB DYB08_RS16255 PF00884 Sulfatase DYB08_RS16290 PF05195 Aminopeptidase P, N-terminal domain DYB08_RS16290 PF00557 Metallopeptidase family M24 DYB08_RS16295 PF01494 FAD binding domain DYB08_RS16300 PF01494 FAD binding domain DYB08_RS16310 PF13411 MerR HTH family regulatory protein DYB08_RS16320 PF01810 LysE type translocator DYB08_RS16325 PF03466 LysR substrate binding domain DYB08_RS16325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS16335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DYB08_RS16340 PF02021 Uncharacterised protein family UPF0102 DYB08_RS16345 PF04972 BON domain DYB08_RS16355 PF00293 NUDIX domain DYB08_RS16355 PF09297 NADH pyrophosphatase zinc ribbon domain DYB08_RS16365 PF00929 Exonuclease DYB08_RS16370 PF01476 LysM domain DYB08_RS16370 PF01476 LysM domain DYB08_RS16370 PF01464 Transglycosylase SLT domain DYB08_RS16370 PF01464 Transglycosylase SLT domain DYB08_RS16375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DYB08_RS16380 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS16385 PF12911 N-terminal TM domain of oligopeptide transport permease C DYB08_RS16385 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS16390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DYB08_RS16390 PF00005 ABC transporter DYB08_RS16395 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS16395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_RS16400 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS16400 PF00593 TonB dependent receptor DYB08_RS16410 PF00929 Exonuclease DYB08_RS16415 PF01979 Amidohydrolase family DYB08_RS16420 PF00360 Phytochrome region DYB08_RS16420 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS16420 PF01590 GAF domain DYB08_RS16420 PF00563 EAL domain DYB08_RS16425 PF00764 Arginosuccinate synthase DYB08_RS16430 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS16430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DYB08_RS16445 PF13610 DDE domain DYB08_RS16450 PF13495 Phage integrase, N-terminal SAM-like domain DYB08_RS16450 PF00589 Phage integrase family DYB08_RS16455 PF00583 Acetyltransferase (GNAT) family DYB08_RS16465 PF13610 DDE domain DYB08_RS16480 PF02796 Helix-turn-helix domain of resolvase DYB08_RS16480 PF00239 Resolvase, N terminal domain DYB08_RS16485 PF13610 DDE domain DYB08_RS16495 PF00583 Acetyltransferase (GNAT) family DYB08_RS16510 PF13610 DDE domain DYB08_RS16520 PF00106 short chain dehydrogenase DYB08_RS16530 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS16530 PF17932 Tetracyclin repressor-like, C-terminal domain DYB08_RS16535 PF17954 Quercetinase C-terminal cupin domain DYB08_RS16535 PF02678 Pirin DYB08_RS16545 PF00106 short chain dehydrogenase DYB08_RS16550 PF00743 Flavin-binding monooxygenase-like DYB08_RS16560 PF00860 Permease family DYB08_RS16565 PF00962 Adenosine/AMP deaminase DYB08_RS16570 PF01292 Prokaryotic cytochrome b561 DYB08_RS16580 PF01351 Ribonuclease HII DYB08_RS16585 PF02599 Global regulator protein family DYB08_RS16590 PF00696 Amino acid kinase family DYB08_RS16590 PF13840 ACT domain DYB08_RS16590 PF01842 ACT domain DYB08_RS16595 PF02272 DHHA1 domain DYB08_RS16595 PF01411 tRNA synthetases class II (A) DYB08_RS16595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DYB08_RS16600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DYB08_RS16600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DYB08_RS16605 PF13393 Histidyl-tRNA synthetase DYB08_RS16610 PF00709 Adenylosuccinate synthetase DYB08_RS16625 PF00248 Aldo/keto reductase family DYB08_RS16635 PF00027 Cyclic nucleotide-binding domain DYB08_RS16635 PF13545 Crp-like helix-turn-helix domain DYB08_RS16640 PF02566 OsmC-like protein DYB08_RS16655 PF02861 Clp amino terminal domain, pathogenicity island component DYB08_RS16655 PF07724 AAA domain (Cdc48 subfamily) DYB08_RS16655 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_RS16655 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_RS16655 PF17871 AAA lid domain DYB08_RS16670 PF10672 S-adenosylmethionine-dependent methyltransferase DYB08_RS16670 PF02926 THUMP domain DYB08_RS16670 PF01170 Putative RNA methylase family UPF0020 DYB08_RS16680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DYB08_RS16680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DYB08_RS16685 PF01979 Amidohydrolase family DYB08_RS16690 PF13488 Glycine zipper DYB08_RS16690 PF00691 OmpA family DYB08_RS16700 PF00043 Glutathione S-transferase, C-terminal domain DYB08_RS16700 PF13417 Glutathione S-transferase, N-terminal domain DYB08_RS16705 PF02390 Putative methyltransferase DYB08_RS16715 PF02798 Glutathione S-transferase, N-terminal domain DYB08_RS16715 PF00043 Glutathione S-transferase, C-terminal domain DYB08_RS16725 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS16725 PF13192 Thioredoxin domain DYB08_RS16745 PF10417 C-terminal domain of 1-Cys peroxiredoxin DYB08_RS16745 PF00578 AhpC/TSA family DYB08_RS16750 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DYB08_RS16750 PF00271 Helicase conserved C-terminal domain DYB08_RS16750 PF04408 Helicase associated domain (HA2) DYB08_RS16750 PF11898 Domain of unknown function (DUF3418) DYB08_RS16750 PF00270 DEAD/DEAH box helicase DYB08_RS16755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DYB08_RS16755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DYB08_RS16765 PF07690 Major Facilitator Superfamily DYB08_RS16770 PF03594 Benzoate membrane transport protein DYB08_RS16775 PF00106 short chain dehydrogenase DYB08_RS16780 PF00970 Oxidoreductase FAD-binding domain DYB08_RS16780 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS16780 PF00175 Oxidoreductase NAD-binding domain DYB08_RS16785 PF00866 Ring hydroxylating beta subunit DYB08_RS16790 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DYB08_RS16790 PF00355 Rieske [2Fe-2S] domain DYB08_RS16795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS16795 PF03466 LysR substrate binding domain DYB08_RS16805 PF00403 Heavy-metal-associated domain DYB08_RS16810 PF09278 MerR, DNA binding DYB08_RS16810 PF00376 MerR family regulatory protein DYB08_RS16850 PF02601 Exonuclease VII, large subunit DYB08_RS16850 PF13742 OB-fold nucleic acid binding domain DYB08_RS16885 PF01810 LysE type translocator DYB08_RS16890 PF00313 'Cold-shock' DNA-binding domain DYB08_RS16910 PF03807 NADP oxidoreductase coenzyme F420-dependent DYB08_RS16910 PF14748 Pyrroline-5-carboxylate reductase dimerisation DYB08_RS16940 PF07690 Major Facilitator Superfamily DYB08_RS16945 PF01638 HxlR-like helix-turn-helix DYB08_RS17080 PF01695 IstB-like ATP binding protein DYB08_RS17320 PF00589 Phage integrase family DYB08_RS17330 PF01406 tRNA synthetases class I (C) catalytic domain DYB08_RS17330 PF09190 DALR domain DYB08_RS17335 PF00571 CBS domain DYB08_RS17335 PF01380 SIS domain DYB08_RS17350 PF03968 OstA-like protein DYB08_RS17355 PF00005 ABC transporter DYB08_RS17355 PF12399 Branched-chain amino acid ATP-binding cassette transporter DYB08_RS17360 PF02321 Outer membrane efflux protein DYB08_RS17365 PF00005 ABC transporter DYB08_RS17365 PF03412 Peptidase C39 family DYB08_RS17365 PF00664 ABC transporter transmembrane region DYB08_RS17375 PF01205 Uncharacterized protein family UPF0029 DYB08_RS17380 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS17390 PF01596 O-methyltransferase DYB08_RS17400 PF11953 Domain of unknown function (DUF3470) DYB08_RS17400 PF00037 4Fe-4S binding domain DYB08_RS17410 PF05192 MutS domain III DYB08_RS17410 PF05190 MutS family domain IV DYB08_RS17410 PF05188 MutS domain II DYB08_RS17410 PF01624 MutS domain I DYB08_RS17410 PF00488 MutS domain V DYB08_RS17415 PF01037 Lrp/AsnC ligand binding domain DYB08_RS17420 PF00892 EamA-like transporter family DYB08_RS17425 PF00990 Diguanylate cyclase, GGDEF domain DYB08_RS17425 PF00563 EAL domain DYB08_RS17425 PF03707 Bacterial signalling protein N terminal repeat DYB08_RS17430 PF03279 Bacterial lipid A biosynthesis acyltransferase DYB08_RS17445 PF07690 Major Facilitator Superfamily DYB08_RS17465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_RS17465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_RS17485 PF13419 Haloacid dehalogenase-like hydrolase DYB08_RS17500 PF04717 Type VI secretion system, phage-baseplate injector DYB08_RS17500 PF13296 Putative type VI secretion system Rhs element Vgr DYB08_RS17500 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) DYB08_RS17505 PF03527 RHS protein DYB08_RS17505 PF05593 RHS Repeat DYB08_RS17520 PF03466 LysR substrate binding domain DYB08_RS17520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS17525 PF01566 Natural resistance-associated macrophage protein DYB08_RS17530 PF03746 LamB/YcsF family DYB08_RS17535 PF07286 Protein of unknown function (DUF1445) DYB08_RS17545 PF02785 Biotin carboxylase C-terminal domain DYB08_RS17545 PF00289 Biotin carboxylase, N-terminal domain DYB08_RS17545 PF00364 Biotin-requiring enzyme DYB08_RS17545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_RS17550 PF00654 Voltage gated chloride channel DYB08_RS17575 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS17585 PF00107 Zinc-binding dehydrogenase DYB08_RS17585 PF13823 Alcohol dehydrogenase GroES-associated DYB08_RS17585 PF08240 Alcohol dehydrogenase GroES-like domain DYB08_RS17600 PF00289 Biotin carboxylase, N-terminal domain DYB08_RS17600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_RS17600 PF02785 Biotin carboxylase C-terminal domain DYB08_RS17605 PF02525 Flavodoxin-like fold DYB08_RS17625 PF08753 NikR C terminal nickel binding domain DYB08_RS17625 PF01402 Ribbon-helix-helix protein, copG family DYB08_RS17630 PF01425 Amidase DYB08_RS17635 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_RS17640 PF00005 ABC transporter DYB08_RS17670 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DYB08_RS17685 PF05947 Type VI secretion system, TssF DYB08_RS17705 PF06761 Intracellular multiplication and human macrophage-killing DYB08_RS17705 PF14331 ImcF-related N-terminal domain DYB08_RS17705 PF06744 Type VI secretion protein IcmF C-terminal DYB08_RS17715 PF00691 OmpA family DYB08_RS17715 PF01389 OmpA-like transmembrane domain DYB08_RS17725 PF10431 C-terminal, D2-small domain, of ClpB protein DYB08_RS17725 PF17871 AAA lid domain DYB08_RS17725 PF00004 ATPase family associated with various cellular activities (AAA) DYB08_RS17725 PF07724 AAA domain (Cdc48 subfamily) DYB08_RS17730 PF06812 ImpA, N-terminal, type VI secretion system DYB08_RS17735 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DYB08_RS17755 PF03466 LysR substrate binding domain DYB08_RS17755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS17765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DYB08_RS17770 PF07690 Major Facilitator Superfamily DYB08_RS17785 PF02677 Epoxyqueuosine reductase QueH DYB08_RS17800 PF00376 MerR family regulatory protein DYB08_RS17800 PF09278 MerR, DNA binding DYB08_RS17815 PF00701 Dihydrodipicolinate synthetase family DYB08_RS17825 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS17830 PF05544 Proline racemase DYB08_RS17835 PF01266 FAD dependent oxidoreductase DYB08_RS17845 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS17845 PF04324 BFD-like [2Fe-2S] binding domain DYB08_RS17855 PF00083 Sugar (and other) transporter DYB08_RS17860 PF00171 Aldehyde dehydrogenase family DYB08_RS17865 PF13520 Amino acid permease DYB08_RS17870 PF03313 Serine dehydratase alpha chain DYB08_RS17870 PF03315 Serine dehydratase beta chain DYB08_RS17875 PF01575 MaoC like domain DYB08_RS17875 PF00171 Aldehyde dehydrogenase family DYB08_RS17880 PF05138 Phenylacetic acid catabolic protein DYB08_RS17885 PF06243 Phenylacetic acid degradation B DYB08_RS17890 PF05138 Phenylacetic acid catabolic protein DYB08_RS17895 PF01883 Iron-sulfur cluster assembly protein DYB08_RS17900 PF00111 2Fe-2S iron-sulfur cluster binding domain DYB08_RS17900 PF00970 Oxidoreductase FAD-binding domain DYB08_RS17900 PF00175 Oxidoreductase NAD-binding domain DYB08_RS17905 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS17910 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS17915 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DYB08_RS17915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_RS17915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_RS17920 PF02803 Thiolase, C-terminal domain DYB08_RS17920 PF00108 Thiolase, N-terminal domain DYB08_RS17925 PF00501 AMP-binding enzyme DYB08_RS17925 PF14535 AMP-binding enzyme C-terminal domain DYB08_RS17930 PF07848 PaaX-like protein DYB08_RS17930 PF08223 PaaX-like protein C-terminal domain DYB08_RS17935 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS17940 PF03061 Thioesterase superfamily DYB08_RS17980 PF00199 Catalase DYB08_RS17985 PF01292 Prokaryotic cytochrome b561 DYB08_RS18005 PF12697 Alpha/beta hydrolase family DYB08_RS18010 PF01613 Flavin reductase like domain DYB08_RS18015 PF00296 Luciferase-like monooxygenase DYB08_RS18020 PF00171 Aldehyde dehydrogenase family DYB08_RS18030 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DYB08_RS18040 PF00171 Aldehyde dehydrogenase family DYB08_RS18045 PF02627 Carboxymuconolactone decarboxylase family DYB08_RS18050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18050 PF03466 LysR substrate binding domain DYB08_RS18055 PF02525 Flavodoxin-like fold DYB08_RS18060 PF01614 Bacterial transcriptional regulator DYB08_RS18060 PF09339 IclR helix-turn-helix domain DYB08_RS18065 PF01494 FAD binding domain DYB08_RS18070 PF07702 UTRA domain DYB08_RS18070 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS18080 PF00005 ABC transporter DYB08_RS18080 PF08402 TOBE domain DYB08_RS18085 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS18090 PF01266 FAD dependent oxidoreductase DYB08_RS18095 PF00266 Aminotransferase class-V DYB08_RS18100 PF13419 Haloacid dehalogenase-like hydrolase DYB08_RS18105 PF07690 Major Facilitator Superfamily DYB08_RS18110 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS18110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS18110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS18115 PF02515 CoA-transferase family III DYB08_RS18130 PF09339 IclR helix-turn-helix domain DYB08_RS18135 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS18140 PF03060 Nitronate monooxygenase DYB08_RS18145 PF07690 Major Facilitator Superfamily DYB08_RS18150 PF09339 IclR helix-turn-helix domain DYB08_RS18155 PF02803 Thiolase, C-terminal domain DYB08_RS18155 PF00108 Thiolase, N-terminal domain DYB08_RS18160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DYB08_RS18160 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain DYB08_RS18160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DYB08_RS18170 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS18175 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS18175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS18175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS18180 PF07690 Major Facilitator Superfamily DYB08_RS18185 PF01144 Coenzyme A transferase DYB08_RS18190 PF01144 Coenzyme A transferase DYB08_RS18200 PF07690 Major Facilitator Superfamily DYB08_RS18210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS18210 PF12806 Acetyl-CoA dehydrogenase C-terminal like DYB08_RS18210 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS18210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS18225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18225 PF03466 LysR substrate binding domain DYB08_RS18230 PF00682 HMGL-like DYB08_RS18235 PF02785 Biotin carboxylase C-terminal domain DYB08_RS18235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DYB08_RS18235 PF18140 Propionyl-coenzyme A carboxylase BT domain DYB08_RS18235 PF00364 Biotin-requiring enzyme DYB08_RS18235 PF00289 Biotin carboxylase, N-terminal domain DYB08_RS18240 PF00378 Enoyl-CoA hydratase/isomerase DYB08_RS18245 PF01039 Carboxyl transferase domain DYB08_RS18250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS18250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS18250 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS18255 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS18260 PF13193 AMP-binding enzyme C-terminal domain DYB08_RS18260 PF00501 AMP-binding enzyme DYB08_RS18280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18280 PF03466 LysR substrate binding domain DYB08_RS18310 PF18146 Damage-inducible protein CinA KH domain DYB08_RS18310 PF02464 Competence-damaged protein DYB08_RS18310 PF00994 Probable molybdopterin binding domain DYB08_RS18320 PF18011 C-terminal domain found in long catalases DYB08_RS18320 PF06628 Catalase-related immune-responsive DYB08_RS18320 PF00199 Catalase DYB08_RS18345 PF00717 Peptidase S24-like DYB08_RS18355 PF01037 Lrp/AsnC ligand binding domain DYB08_RS18355 PF13404 AsnC-type helix-turn-helix domain DYB08_RS18365 PF00072 Response regulator receiver domain DYB08_RS18365 PF09308 LuxQ, periplasmic DYB08_RS18365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DYB08_RS18365 PF00512 His Kinase A (phospho-acceptor) domain DYB08_RS18370 PF00072 Response regulator receiver domain DYB08_RS18385 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS18390 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS18395 PF00005 ABC transporter DYB08_RS18400 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_RS18405 PF00497 Bacterial extracellular solute-binding proteins, family 3 DYB08_RS18415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18415 PF03466 LysR substrate binding domain DYB08_RS18420 PF01810 LysE type translocator DYB08_RS18430 PF00266 Aminotransferase class-V DYB08_RS18440 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS18445 PF00581 Rhodanese-like domain DYB08_RS18455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18455 PF03466 LysR substrate binding domain DYB08_RS18460 PF02798 Glutathione S-transferase, N-terminal domain DYB08_RS18465 PF14834 Glutathione S-transferase, C-terminal domain DYB08_RS18465 PF02798 Glutathione S-transferase, N-terminal domain DYB08_RS18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18470 PF03466 LysR substrate binding domain DYB08_RS18475 PF03788 LrgA family DYB08_RS18480 PF04172 LrgB-like family DYB08_RS18485 PF00155 Aminotransferase class I and II DYB08_RS18485 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS18500 PF07690 Major Facilitator Superfamily DYB08_RS18505 PF16957 Malonate decarboxylase, alpha subunit, transporter DYB08_RS18510 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DYB08_RS18515 PF06857 Malonate decarboxylase delta subunit (MdcD) DYB08_RS18520 PF01039 Carboxyl transferase domain DYB08_RS18530 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DYB08_RS18535 PF00698 Acyl transferase domain DYB08_RS18550 PF03466 LysR substrate binding domain DYB08_RS18550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18555 PF00155 Aminotransferase class I and II DYB08_RS18555 PF00392 Bacterial regulatory proteins, gntR family DYB08_RS18565 PF02322 Cytochrome bd terminal oxidase subunit II DYB08_RS18570 PF01654 Cytochrome bd terminal oxidase subunit I DYB08_RS18585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS18585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS18585 PF02770 Acyl-CoA dehydrogenase, middle domain DYB08_RS18590 PF00296 Luciferase-like monooxygenase DYB08_RS18595 PF00083 Sugar (and other) transporter DYB08_RS18620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DYB08_RS18625 PF00005 ABC transporter DYB08_RS18630 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS18635 PF02668 Taurine catabolism dioxygenase TauD, TfdA family DYB08_RS18640 PF01177 Asp/Glu/Hydantoin racemase DYB08_RS18645 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DYB08_RS18655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18655 PF03466 LysR substrate binding domain DYB08_RS18665 PF13382 Adenine deaminase C-terminal domain DYB08_RS18665 PF01979 Amidohydrolase family DYB08_RS18675 PF03960 ArsC family DYB08_RS18680 PF01022 Bacterial regulatory protein, arsR family DYB08_RS18685 PF01758 Sodium Bile acid symporter family DYB08_RS18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18690 PF03466 LysR substrate binding domain DYB08_RS18705 PF07992 Pyridine nucleotide-disulphide oxidoreductase DYB08_RS18705 PF13192 Thioredoxin domain DYB08_RS18720 PF00132 Bacterial transferase hexapeptide (six repeats) DYB08_RS18725 PF00588 SpoU rRNA Methylase family DYB08_RS18730 PF14579 Helix-hairpin-helix motif DYB08_RS18730 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYB08_RS18730 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYB08_RS18730 PF01336 OB-fold nucleic acid binding domain DYB08_RS18730 PF02811 PHP domain DYB08_RS18735 PF00710 Asparaginase, N-terminal DYB08_RS18735 PF17763 Glutaminase/Asparaginase C-terminal domain DYB08_RS18755 PF00375 Sodium:dicarboxylate symporter family DYB08_RS18760 PF00155 Aminotransferase class I and II DYB08_RS18765 PF01641 SelR domain DYB08_RS18770 PF00255 Glutathione peroxidase DYB08_RS18775 PF12852 Cupin DYB08_RS18775 PF12833 Helix-turn-helix domain DYB08_RS18785 PF00155 Aminotransferase class I and II DYB08_RS18790 PF08335 GlnD PII-uridylyltransferase DYB08_RS18790 PF01966 HD domain DYB08_RS18790 PF01909 Nucleotidyltransferase domain DYB08_RS18795 PF02222 ATP-grasp domain DYB08_RS18805 PF05437 Branched-chain amino acid transport protein (AzlD) DYB08_RS18810 PF03591 AzlC protein DYB08_RS18835 PF01926 50S ribosome-binding GTPase DYB08_RS18835 PF06071 Protein of unknown function (DUF933) DYB08_RS18840 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS18845 PF00005 ABC transporter DYB08_RS18845 PF09383 NIL domain DYB08_RS18850 PF03180 NLPA lipoprotein DYB08_RS18855 PF03180 NLPA lipoprotein DYB08_RS18860 PF00296 Luciferase-like monooxygenase DYB08_RS18870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DYB08_RS18870 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DYB08_RS18885 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS18890 PF00528 Binding-protein-dependent transport system inner membrane component DYB08_RS18895 PF00005 ABC transporter DYB08_RS18905 PF01037 Lrp/AsnC ligand binding domain DYB08_RS18910 PF01709 Transcriptional regulator DYB08_RS18920 PF00440 Bacterial regulatory proteins, tetR family DYB08_RS18945 PF03466 LysR substrate binding domain DYB08_RS18945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DYB08_RS18955 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DYB08_RS18965 PF00892 EamA-like transporter family DYB08_RS18990 PF00577 Outer membrane usher protein DYB08_RS18990 PF13953 PapC C-terminal domain DYB08_RS18990 PF13954 PapC N-terminal domain DYB08_RS18995 PF02753 Pili assembly chaperone PapD, C-terminal domain DYB08_RS18995 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain DYB08_RS19000 PF16970 Type-1 fimbrial protein, A DYB08_RS19015 PF06968 Biotin and Thiamin Synthesis associated domain DYB08_RS19015 PF04055 Radical SAM superfamily DYB08_RS19020 PF08331 Domain of unknown function (DUF1730) DYB08_RS19025 PF03853 YjeF-related protein N-terminus DYB08_RS19025 PF01256 Carbohydrate kinase DYB08_RS19030 PF02075 Crossover junction endodeoxyribonuclease RuvC DYB08_RS19045 PF00905 Penicillin binding protein transpeptidase domain DYB08_RS19065 PF00438 S-adenosylmethionine synthetase, N-terminal domain DYB08_RS19065 PF02773 S-adenosylmethionine synthetase, C-terminal domain DYB08_RS19065 PF02772 S-adenosylmethionine synthetase, central domain DYB08_RS19070 PF02779 Transketolase, pyrimidine binding domain DYB08_RS19070 PF02780 Transketolase, C-terminal domain DYB08_RS19070 PF00456 Transketolase, thiamine diphosphate binding domain DYB08_RS19080 PF04264 YceI-like domain DYB08_RS19090 PF09992 Phosphodiester glycosidase DYB08_RS19100 PF05958 tRNA (Uracil-5-)-methyltransferase DYB08_RS19105 PF04229 GrpB protein DYB08_RS19110 PF14850 DNA-binding domain of Proline dehydrogenase DYB08_RS19110 PF01619 Proline dehydrogenase DYB08_RS19110 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DYB08_RS19110 PF00171 Aldehyde dehydrogenase family DYB08_RS19115 PF01037 Lrp/AsnC ligand binding domain DYB08_RS19120 PF00474 Sodium:solute symporter family DYB08_RS19125 PF02146 Sir2 family DYB08_RS19130 PF01597 Glycine cleavage H-protein DYB08_RS19135 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DYB08_RS19135 PF12833 Helix-turn-helix domain DYB08_RS19145 PF00664 ABC transporter transmembrane region DYB08_RS19145 PF00005 ABC transporter DYB08_RS19150 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DYB08_RS19155 PF06912 Protein of unknown function (DUF1275) DYB08_RS19185 PF08007 Cupin superfamily protein DYB08_RS19190 PF02545 Maf-like protein DYB08_RS19200 PF00162 Phosphoglycerate kinase DYB08_RS19210 PF01116 Fructose-bisphosphate aldolase class-II DYB08_RS19215 PF09312 SurA N-terminal domain DYB08_RS19215 PF00639 PPIC-type PPIASE domain DYB08_RS19220 PF04453 LPS transport system D DYB08_RS19220 PF03968 OstA-like protein DYB08_RS19225 PF01636 Phosphotransferase enzyme family DYB08_RS19230 PF00483 Nucleotidyl transferase DYB08_RS19235 PF02527 rRNA small subunit methyltransferase G DYB08_RS19240 PF13614 AAA domain DYB08_RS19245 PF17762 HTH domain found in ParB protein DYB08_RS19245 PF02195 ParB-like nuclease domain DYB08_RS19250 PF01618 MotA/TolQ/ExbB proton channel family DYB08_RS19260 PF00664 ABC transporter transmembrane region DYB08_RS19260 PF00005 ABC transporter DYB08_RS19265 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DYB08_RS19270 PF02348 Cytidylyltransferase DYB08_RS19275 PF09115 DNA polymerase III, delta subunit, C terminal DYB08_RS19285 PF01026 TatD related DNase DYB08_RS19300 PF07963 Prokaryotic N-terminal methylation motif DYB08_RS19300 PF02501 Type II secretion system (T2SS), protein I DYB08_RS19305 PF07963 Prokaryotic N-terminal methylation motif DYB08_RS19305 PF11612 Type II secretion system (T2SS), protein J DYB08_RS19310 PF03934 Type II secretion system (T2SS), protein K DYB08_RS19320 PF03167 Uracil DNA glycosylase superfamily DYB08_RS19330 PF14437 MafB19-like deaminase DYB08_RS19340 PF02224 Cytidylate kinase DYB08_RS19345 PF00575 S1 RNA binding domain DYB08_RS19350 PF00216 Bacterial DNA-binding protein DYB08_RS19360 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DYB08_RS19395 PF00877 NlpC/P60 family DYB08_RS19505 PF09383 NIL domain DYB08_RS19505 PF00005 ABC transporter DYB08_RS19510 PF02195 ParB-like nuclease domain DYB08_RS19655 PF00929 Exonuclease DYB08_RS19705 PF13610 DDE domain DYB08_RS19715 PF00005 ABC transporter DYB08_RS19715 PF12848 ABC transporter DYB08_RS19720 PF01636 Phosphotransferase enzyme family DYB08_RS19730 PF13610 DDE domain DYB08_RS19790 PF00692 dUTPase DYB08_RS19815 PF00268 Ribonucleotide reductase, small chain DYB08_RS19820 PF00317 Ribonucleotide reductase, all-alpha domain DYB08_RS19820 PF02867 Ribonucleotide reductase, barrel domain DYB08_RS19820 PF03477 ATP cone domain DYB08_RS19845 PF13476 AAA domain DYB08_RS19890 PF00154 recA bacterial DNA recombination protein DYB08_RS19910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DYB08_RS19910 PF07733 Bacterial DNA polymerase III alpha NTPase domain DYB08_RS19910 PF02811 PHP domain DYB08_RS19910 PF14579 Helix-hairpin-helix motif DYB08_RS19945 PF00589 Phage integrase family DYB08_RS19945 PF02899 Phage integrase, N-terminal SAM-like domain DYB08_RS19970 PF00625 Guanylate kinase DYB08_RS20010 PF01807 CHC2 zinc finger DYB08_RS20010 PF08275 DNA primase catalytic core, N-terminal domain DYB08_RS20010 PF10410 DnaB-helicase binding domain of primase DYB08_RS20050 PF00905 Penicillin binding protein transpeptidase domain DYB08_RS20065 PF00593 TonB dependent receptor DYB08_RS20065 PF07715 TonB-dependent Receptor Plug Domain DYB08_RS20085 PF05973 Phage derived protein Gp49-like (DUF891) DYB08_RS20090 PF00905 Penicillin binding protein transpeptidase domain