locus-tag class description C9E88_RS00005 PF00308 Bacterial dnaA protein C9E88_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix C9E88_RS00005 PF11638 DnaA N-terminal domain C9E88_RS00010 PF02767 DNA polymerase III beta subunit, central domain C9E88_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain C9E88_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain C9E88_RS00015 PF02463 RecF/RecN/SMC N terminal domain C9E88_RS00020 PF00204 DNA gyrase B C9E88_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus C9E88_RS00020 PF18053 DNA gyrase B subunit insert domain C9E88_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS00020 PF01751 Toprim domain C9E88_RS00030 PF12848 ABC transporter C9E88_RS00030 PF00005 ABC transporter C9E88_RS00050 PF01521 Iron-sulphur cluster biosynthesis C9E88_RS00065 PF00012 Hsp70 protein C9E88_RS00070 PF01025 GrpE C9E88_RS00085 PF07859 alpha/beta hydrolase fold C9E88_RS00095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C9E88_RS00125 PF00209 Sodium:neurotransmitter symporter family C9E88_RS00135 PF13359 DDE superfamily endonuclease C9E88_RS00135 PF13613 Helix-turn-helix of DDE superfamily endonuclease C9E88_RS00175 PF00691 OmpA family C9E88_RS00180 PF01029 NusB family C9E88_RS00180 PF01189 16S rRNA methyltransferase RsmB/F C9E88_RS00185 PF00551 Formyl transferase C9E88_RS00185 PF02911 Formyl transferase, C-terminal domain C9E88_RS00205 PF05662 Coiled stalk of trimeric autotransporter adhesin C9E88_RS00205 PF05658 Head domain of trimeric autotransporter adhesin C9E88_RS00205 PF03895 YadA-like membrane anchor domain C9E88_RS00205 PF13018 Extended Signal Peptide of Type V secretion system C9E88_RS00215 PF00920 Dehydratase family C9E88_RS00230 PF03707 Bacterial signalling protein N terminal repeat C9E88_RS00230 PF00563 EAL domain C9E88_RS00230 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS00250 PF00311 Phosphoenolpyruvate carboxylase C9E88_RS00255 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS00255 PF16859 Tetracyclin repressor-like, C-terminal domain C9E88_RS00260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_RS00265 PF00873 AcrB/AcrD/AcrF family C9E88_RS00275 PF00226 DnaJ domain C9E88_RS00275 PF00684 DnaJ central domain C9E88_RS00275 PF01556 DnaJ C terminal domain C9E88_RS00280 PF15864 Protein glycosylation ligase C9E88_RS00280 PF04932 O-Antigen ligase C9E88_RS00280 PF11846 Virulence factor membrane-bound polymerase, C-terminal C9E88_RS00285 PF05173 Dihydrodipicolinate reductase, C-terminus C9E88_RS00285 PF01113 Dihydrodipicolinate reductase, N-terminus C9E88_RS00305 PF08240 Alcohol dehydrogenase GroES-like domain C9E88_RS00305 PF00107 Zinc-binding dehydrogenase C9E88_RS00310 PF03352 Methyladenine glycosylase C9E88_RS00320 PF01551 Peptidase family M23 C9E88_RS00325 PF10576 Iron-sulfur binding domain of endonuclease III C9E88_RS00325 PF00730 HhH-GPD superfamily base excision DNA repair protein C9E88_RS00325 PF00633 Helix-hairpin-helix motif C9E88_RS00325 PF14815 NUDIX domain C9E88_RS00340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C9E88_RS00340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_RS00345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_RS00345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C9E88_RS00350 PF13807 G-rich domain on putative tyrosine kinase C9E88_RS00350 PF13614 AAA domain C9E88_RS00350 PF02706 Chain length determinant protein C9E88_RS00355 PF01451 Low molecular weight phosphotyrosine protein phosphatase C9E88_RS00360 PF18412 Outer-membrane lipoprotein Wza C-terminal domain C9E88_RS00360 PF02563 Polysaccharide biosynthesis/export protein C9E88_RS00360 PF10531 SLBB domain C9E88_RS00365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C9E88_RS00365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C9E88_RS00365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C9E88_RS00370 PF01370 NAD dependent epimerase/dehydratase family C9E88_RS00380 PF12464 Maltose acetyltransferase C9E88_RS00380 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS00385 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS00390 PF00534 Glycosyl transferases group 1 C9E88_RS00390 PF13439 Glycosyltransferase Family 4 C9E88_RS00395 PF13439 Glycosyltransferase Family 4 C9E88_RS00395 PF00534 Glycosyl transferases group 1 C9E88_RS00400 PF13477 Glycosyl transferase 4-like C9E88_RS00400 PF00534 Glycosyl transferases group 1 C9E88_RS00405 PF02397 Bacterial sugar transferase C9E88_RS00410 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS00410 PF17836 PglD N-terminal domain C9E88_RS00410 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_RS00415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C9E88_RS00420 PF02719 Polysaccharide biosynthesis protein C9E88_RS00425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C9E88_RS00425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C9E88_RS00425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C9E88_RS00430 PF16363 GDP-mannose 4,6 dehydratase C9E88_RS00435 PF01370 NAD dependent epimerase/dehydratase family C9E88_RS00440 PF00293 NUDIX domain C9E88_RS00460 PF00534 Glycosyl transferases group 1 C9E88_RS00460 PF13439 Glycosyltransferase Family 4 C9E88_RS00465 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS00470 PF13579 Glycosyl transferase 4-like domain C9E88_RS00470 PF00534 Glycosyl transferases group 1 C9E88_RS00475 PF00483 Nucleotidyl transferase C9E88_RS00475 PF01050 Mannose-6-phosphate isomerase C9E88_RS00480 PF02397 Bacterial sugar transferase C9E88_RS00485 PF00483 Nucleotidyl transferase C9E88_RS00490 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C9E88_RS00490 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C9E88_RS00490 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C9E88_RS00495 PF00342 Phosphoglucose isomerase C9E88_RS00500 PF16363 GDP-mannose 4,6 dehydratase C9E88_RS00505 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_RS00505 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_RS00505 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_RS00505 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_RS00510 PF01380 SIS domain C9E88_RS00515 PF12804 MobA-like NTP transferase domain C9E88_RS00515 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_RS00515 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS00520 PF04608 Phosphatidylglycerophosphatase A C9E88_RS00525 PF00586 AIR synthase related protein, N-terminal domain C9E88_RS00525 PF02769 AIR synthase related protein, C-terminal domain C9E88_RS00530 PF01029 NusB family C9E88_RS00535 PF00885 6,7-dimethyl-8-ribityllumazine synthase C9E88_RS00540 PF00925 GTP cyclohydrolase II C9E88_RS00540 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C9E88_RS00545 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS00555 PF01323 DSBA-like thioredoxin domain C9E88_RS00560 PF00171 Aldehyde dehydrogenase family C9E88_RS00585 PF06100 MCRA family C9E88_RS00595 PF05524 PEP-utilising enzyme, N-terminal C9E88_RS00595 PF00391 PEP-utilising enzyme, mobile domain C9E88_RS00595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C9E88_RS00595 PF00381 PTS HPr component phosphorylation site C9E88_RS00595 PF02896 PEP-utilising enzyme, TIM barrel domain C9E88_RS00600 PF00294 pfkB family carbohydrate kinase C9E88_RS00605 PF02378 Phosphotransferase system, EIIC C9E88_RS00605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C9E88_RS00620 PF00271 Helicase conserved C-terminal domain C9E88_RS00620 PF12419 SNF2 Helicase protein C9E88_RS00620 PF00176 SNF2 family N-terminal domain C9E88_RS00625 PF13657 HipA N-terminal domain C9E88_RS00625 PF07804 HipA-like C-terminal domain C9E88_RS00650 PF01323 DSBA-like thioredoxin domain C9E88_RS00655 PF00171 Aldehyde dehydrogenase family C9E88_RS00670 PF00465 Iron-containing alcohol dehydrogenase C9E88_RS00675 PF13737 Transposase DDE domain C9E88_RS00750 PF13614 AAA domain C9E88_RS00765 PF09335 SNARE associated Golgi protein C9E88_RS00770 PF07681 DoxX C9E88_RS00780 PF02540 NAD synthase C9E88_RS00780 PF00958 GMP synthase C terminal domain C9E88_RS00780 PF00117 Glutamine amidotransferase class-I C9E88_RS00785 PF07728 AAA domain (dynein-related subfamily) C9E88_RS00785 PF12102 Domain of unknown function (DUF3578) C9E88_RS00795 PF00145 C-5 cytosine-specific DNA methylase C9E88_RS00800 PF08448 PAS fold C9E88_RS00800 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS00805 PF05726 Pirin C-terminal cupin domain C9E88_RS00805 PF02678 Pirin C9E88_RS00820 PF11808 Phosphate regulon sensor protein PhoR C9E88_RS00820 PF00989 PAS fold C9E88_RS00820 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS00825 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS00825 PF00072 Response regulator receiver domain C9E88_RS00835 PF00106 short chain dehydrogenase C9E88_RS00840 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C9E88_RS00865 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS00870 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS00875 PF00005 ABC transporter C9E88_RS00880 PF00296 Luciferase-like monooxygenase C9E88_RS00885 PF01554 MatE C9E88_RS00890 PF00155 Aminotransferase class I and II C9E88_RS00895 PF13296 Putative type VI secretion system Rhs element Vgr C9E88_RS00895 PF04717 Type VI secretion system, phage-baseplate injector C9E88_RS00895 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) C9E88_RS00930 PF04261 Dyp-type peroxidase family C9E88_RS00935 PF01810 LysE type translocator C9E88_RS00945 PF05163 DinB family C9E88_RS00950 PF00950 ABC 3 transport family C9E88_RS00955 PF00005 ABC transporter C9E88_RS00975 PF00119 ATP synthase A chain C9E88_RS00980 PF00137 ATP synthase subunit C C9E88_RS00985 PF00430 ATP synthase B/B' CF(0) C9E88_RS00990 PF00213 ATP synthase delta (OSCP) subunit C9E88_RS00995 PF00306 ATP synthase alpha/beta chain, C terminal domain C9E88_RS00995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C9E88_RS00995 PF02874 ATP synthase alpha/beta family, beta-barrel domain C9E88_RS01000 PF00231 ATP synthase C9E88_RS01005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C9E88_RS01005 PF02874 ATP synthase alpha/beta family, beta-barrel domain C9E88_RS01010 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C9E88_RS01025 PF01263 Aldose 1-epimerase C9E88_RS01035 PF02678 Pirin C9E88_RS01035 PF05726 Pirin C-terminal cupin domain C9E88_RS01050 PF00255 Glutathione peroxidase C9E88_RS01065 PF01300 Telomere recombination C9E88_RS01070 PF02481 DNA recombination-mediator protein A C9E88_RS01070 PF17782 DprA winged helix domain C9E88_RS01080 PF01327 Polypeptide deformylase C9E88_RS01105 PF08359 YsiA-like protein, C-terminal region C9E88_RS01105 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS01135 PF01435 Peptidase family M48 C9E88_RS01140 PF08497 Radical SAM N-terminal C9E88_RS01140 PF04055 Radical SAM superfamily C9E88_RS01140 PF11842 Domain of unknown function (DUF3362) C9E88_RS01155 PF00817 impB/mucB/samB family C9E88_RS01155 PF11799 impB/mucB/samB family C-terminal domain C9E88_RS01155 PF11798 IMS family HHH motif C9E88_RS01165 PF07690 Major Facilitator Superfamily C9E88_RS01175 PF03641 Possible lysine decarboxylase C9E88_RS01180 PF03741 Integral membrane protein TerC family C9E88_RS01180 PF03471 Transporter associated domain C9E88_RS01185 PF02810 SEC-C motif C9E88_RS01190 PF03458 UPF0126 domain C9E88_RS01195 PF07690 Major Facilitator Superfamily C9E88_RS01200 PF00521 DNA gyrase/topoisomerase IV, subunit A C9E88_RS01200 PF03989 DNA gyrase C-terminal domain, beta-propeller C9E88_RS01205 PF00501 AMP-binding enzyme C9E88_RS01205 PF13193 AMP-binding enzyme C-terminal domain C9E88_RS01220 PF00719 Inorganic pyrophosphatase C9E88_RS01225 PF03573 outer membrane porin, OprD family C9E88_RS01240 PF13335 Magnesium chelatase, subunit ChlI C-terminal C9E88_RS01240 PF01078 Magnesium chelatase, subunit ChlI C9E88_RS01250 PF00543 Nitrogen regulatory protein P-II C9E88_RS01255 PF00909 Ammonium Transporter Family C9E88_RS01260 PF03477 ATP cone domain C9E88_RS01265 PF01872 RibD C-terminal domain C9E88_RS01265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C9E88_RS01275 PF00677 Lumazine binding domain C9E88_RS01280 PF09335 SNARE associated Golgi protein C9E88_RS01300 PF00883 Cytosol aminopeptidase family, catalytic domain C9E88_RS01300 PF02789 Cytosol aminopeptidase family, N-terminal domain C9E88_RS01305 PF03739 Lipopolysaccharide export system permease LptF/LptG C9E88_RS01310 PF03739 Lipopolysaccharide export system permease LptF/LptG C9E88_RS01315 PF01676 Metalloenzyme superfamily C9E88_RS01315 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C9E88_RS01320 PF17820 PDZ domain C9E88_RS01320 PF01471 Putative peptidoglycan binding domain C9E88_RS01320 PF03572 Peptidase family S41 C9E88_RS01325 PF00158 Sigma-54 interaction domain C9E88_RS01325 PF02954 Bacterial regulatory protein, Fis family C9E88_RS01325 PF00072 Response regulator receiver domain C9E88_RS01330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS01330 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS01335 PF00196 Bacterial regulatory proteins, luxR family C9E88_RS01335 PF00072 Response regulator receiver domain C9E88_RS01340 PF00768 D-alanyl-D-alanine carboxypeptidase C9E88_RS01345 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_RS01350 PF03447 Homoserine dehydrogenase, NAD binding domain C9E88_RS01350 PF00742 Homoserine dehydrogenase C9E88_RS01350 PF01842 ACT domain C9E88_RS01355 PF10411 Disulfide bond isomerase protein N-terminus C9E88_RS01355 PF13098 Thioredoxin-like domain C9E88_RS01360 PF00589 Phage integrase family C9E88_RS01360 PF02899 Phage integrase, N-terminal SAM-like domain C9E88_RS01370 PF07664 Ferrous iron transport protein B C terminus C9E88_RS01370 PF02421 Ferrous iron transport protein B C9E88_RS01370 PF07670 Nucleoside recognition C9E88_RS01380 PF08245 Mur ligase middle domain C9E88_RS01380 PF02875 Mur ligase family, glutamate ligase domain C9E88_RS01385 PF01098 Cell cycle protein C9E88_RS01390 PF00749 tRNA synthetases class I (E and Q), catalytic domain C9E88_RS01395 PF01258 Prokaryotic dksA/traR C4-type zinc finger C9E88_RS01400 PF00149 Calcineurin-like phosphoesterase C9E88_RS01405 PF00293 NUDIX domain C9E88_RS01410 PF13667 ThiC-associated domain C9E88_RS01410 PF01964 Radical SAM ThiC family C9E88_RS01425 PF01895 PhoU domain C9E88_RS01440 PF04632 Fusaric acid resistance protein family C9E88_RS01450 PF13533 Biotin-lipoyl like C9E88_RS01455 PF03652 Holliday junction resolvase C9E88_RS01460 PF02622 Uncharacterized ACR, COG1678 C9E88_RS01465 PF02463 RecF/RecN/SMC N terminal domain C9E88_RS01470 PF06865 Pyrimidine/purine nucleoside phosphorylase C9E88_RS01475 PF00588 SpoU rRNA Methylase family C9E88_RS01475 PF08032 RNA 2'-O ribose methyltransferase substrate binding C9E88_RS01485 PF01121 Dephospho-CoA kinase C9E88_RS01490 PF06750 Bacterial Peptidase A24 N-terminal domain C9E88_RS01490 PF01478 Type IV leader peptidase family C9E88_RS01495 PF00482 Type II secretion system (T2SS), protein F C9E88_RS01500 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C9E88_RS01500 PF00437 Type II/IV secretion system protein C9E88_RS01505 PF00121 Triosephosphate isomerase C9E88_RS01510 PF03840 Preprotein translocase SecG subunit C9E88_RS01535 PF02576 RimP N-terminal domain C9E88_RS01535 PF17384 RimP C-terminal SH3 domain C9E88_RS01540 PF13184 NusA-like KH domain C9E88_RS01540 PF00575 S1 RNA binding domain C9E88_RS01540 PF08529 NusA N-terminal domain C9E88_RS01545 PF11987 Translation-initiation factor 2 C9E88_RS01545 PF00009 Elongation factor Tu GTP binding domain C9E88_RS01545 PF04760 Translation initiation factor IF-2, N-terminal region C9E88_RS01545 PF08364 Bacterial translation initiation factor IF-2 associated region C9E88_RS01550 PF02033 Ribosome-binding factor A C9E88_RS01555 PF03334 Na+/H+ antiporter subunit C9E88_RS01560 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) C9E88_RS01565 PF01899 Na+/H+ ion antiporter subunit C9E88_RS01570 PF00361 Proton-conducting membrane transporter C9E88_RS01575 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C9E88_RS01580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C9E88_RS01580 PF00361 Proton-conducting membrane transporter C9E88_RS01580 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter C9E88_RS01580 PF13244 Domain of unknown function (DUF4040) C9E88_RS01595 PF01502 Phosphoribosyl-AMP cyclohydrolase C9E88_RS01600 PF00106 short chain dehydrogenase C9E88_RS01605 PF01053 Cys/Met metabolism PLP-dependent enzyme C9E88_RS01610 PF00005 ABC transporter C9E88_RS01610 PF12848 ABC transporter C9E88_RS01615 PF01545 Cation efflux family C9E88_RS01630 PF00749 tRNA synthetases class I (E and Q), catalytic domain C9E88_RS01650 PF01795 MraW methylase family C9E88_RS01660 PF00905 Penicillin binding protein transpeptidase domain C9E88_RS01660 PF03717 Penicillin-binding Protein dimerisation domain C9E88_RS01665 PF01225 Mur ligase family, catalytic domain C9E88_RS01665 PF08245 Mur ligase middle domain C9E88_RS01665 PF02875 Mur ligase family, glutamate ligase domain C9E88_RS01670 PF08245 Mur ligase middle domain C9E88_RS01670 PF02875 Mur ligase family, glutamate ligase domain C9E88_RS01670 PF01225 Mur ligase family, catalytic domain C9E88_RS01675 PF00953 Glycosyl transferase family 4 C9E88_RS01680 PF13847 Methyltransferase domain C9E88_RS01685 PF00912 Transglycosylase C9E88_RS01685 PF17092 Penicillin-binding protein OB-like domain C9E88_RS01685 PF00905 Penicillin binding protein transpeptidase domain C9E88_RS01690 PF11104 Type IV pilus assembly protein PilM; C9E88_RS01695 PF05137 Fimbrial assembly protein (PilN) C9E88_RS01700 PF04350 Pilus assembly protein, PilO C9E88_RS01710 PF11741 AMIN domain C9E88_RS01710 PF03958 Bacterial type II/III secretion system short domain C9E88_RS01710 PF07660 Secretin and TonB N terminus short domain C9E88_RS01710 PF00263 Bacterial type II and III secretion system protein C9E88_RS01715 PF01202 Shikimate kinase C9E88_RS01720 PF01761 3-dehydroquinate synthase C9E88_RS01730 PF01645 Conserved region in glutamate synthase C9E88_RS01730 PF04898 Glutamate synthase central domain C9E88_RS01730 PF00310 Glutamine amidotransferases class-II C9E88_RS01730 PF01493 GXGXG motif C9E88_RS01735 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS01735 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C9E88_RS01745 PF04011 LemA family C9E88_RS01750 PF04536 TPM domain C9E88_RS01760 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS01760 PF00114 Pilin (bacterial filament) C9E88_RS01770 PF00535 Glycosyl transferase family 2 C9E88_RS01775 PF00664 ABC transporter transmembrane region C9E88_RS01775 PF00005 ABC transporter C9E88_RS01800 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase C9E88_RS01800 PF00535 Glycosyl transferase family 2 C9E88_RS01805 PF03275 UDP-galactopyranose mutase C9E88_RS01815 PF13439 Glycosyltransferase Family 4 C9E88_RS01815 PF00534 Glycosyl transferases group 1 C9E88_RS01820 PF00114 Pilin (bacterial filament) C9E88_RS01820 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS01825 PF00210 Ferritin-like domain C9E88_RS01830 PF04324 BFD-like [2Fe-2S] binding domain C9E88_RS01835 PF01042 Endoribonuclease L-PSP C9E88_RS01840 PF02824 TGS domain C9E88_RS01840 PF04607 Region found in RelA / SpoT proteins C9E88_RS01840 PF13291 ACT domain C9E88_RS01845 PF01192 RNA polymerase Rpb6 C9E88_RS01850 PF00625 Guanylate kinase C9E88_RS01855 PF02401 LytB protein C9E88_RS01860 PF00114 Pilin (bacterial filament) C9E88_RS01860 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS01885 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS01885 PF00114 Pilin (bacterial filament) C9E88_RS01890 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor C9E88_RS01890 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS01895 PF00886 Ribosomal protein S16 C9E88_RS01900 PF01782 RimM N-terminal domain C9E88_RS01900 PF05239 PRC-barrel domain C9E88_RS01905 PF01746 tRNA (Guanine-1)-methyltransferase C9E88_RS01910 PF01245 Ribosomal protein L19 C9E88_RS01915 PF00561 alpha/beta hydrolase fold C9E88_RS01920 PF00561 alpha/beta hydrolase fold C9E88_RS01925 PF00561 alpha/beta hydrolase fold C9E88_RS01930 PF00561 alpha/beta hydrolase fold C9E88_RS01935 PF03280 Proteobacterial lipase chaperone protein C9E88_RS01940 PF01509 TruB family pseudouridylate synthase (N terminal domain) C9E88_RS01940 PF09157 Pseudouridine synthase II TruB, C-terminal C9E88_RS01940 PF16198 tRNA pseudouridylate synthase B C-terminal domain C9E88_RS01945 PF01925 Sulfite exporter TauE/SafE C9E88_RS01955 PF00892 EamA-like transporter family C9E88_RS01965 PF00892 EamA-like transporter family C9E88_RS01970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_RS01970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_RS01975 PF01565 FAD binding domain C9E88_RS01975 PF02913 FAD linked oxidases, C-terminal domain C9E88_RS01990 PF02678 Pirin C9E88_RS01990 PF05726 Pirin C-terminal cupin domain C9E88_RS01995 PF07690 Major Facilitator Superfamily C9E88_RS02000 PF12823 Domain of unknown function (DUF3817) C9E88_RS02005 PF12805 FUSC-like inner membrane protein yccS C9E88_RS02015 PF00080 Copper/zinc superoxide dismutase (SODC) C9E88_RS02020 PF01594 AI-2E family transporter C9E88_RS02025 PF13614 AAA domain C9E88_RS02040 PF01209 ubiE/COQ5 methyltransferase family C9E88_RS02060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C9E88_RS02065 PF01197 Ribosomal protein L31 C9E88_RS02070 PF03109 ABC1 family C9E88_RS02080 PF01554 MatE C9E88_RS02090 PF06969 HemN C-terminal domain C9E88_RS02090 PF04055 Radical SAM superfamily C9E88_RS02095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS02095 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_RS02095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS02095 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS02100 PF08501 Shikimate dehydrogenase substrate binding domain C9E88_RS02100 PF01488 Shikimate / quinate 5-dehydrogenase C9E88_RS02100 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C9E88_RS02110 PF01218 Coproporphyrinogen III oxidase C9E88_RS02115 PF04055 Radical SAM superfamily C9E88_RS02115 PF06969 HemN C-terminal domain C9E88_RS02125 PF00925 GTP cyclohydrolase II C9E88_RS02130 PF02780 Transketolase, C-terminal domain C9E88_RS02130 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C9E88_RS02130 PF02779 Transketolase, pyrimidine binding domain C9E88_RS02135 PF00459 Inositol monophosphatase family C9E88_RS02140 PF01202 Shikimate kinase C9E88_RS02145 PF00270 DEAD/DEAH box helicase C9E88_RS02145 PF12343 Cold shock protein DEAD box A C9E88_RS02145 PF00271 Helicase conserved C-terminal domain C9E88_RS02145 PF03880 DbpA RNA binding domain C9E88_RS02150 PF00005 ABC transporter C9E88_RS02155 PF02405 Permease MlaE C9E88_RS02175 PF01544 CorA-like Mg2+ transporter protein C9E88_RS02180 PF03641 Possible lysine decarboxylase C9E88_RS02185 PF00293 NUDIX domain C9E88_RS02190 PF00156 Phosphoribosyl transferase domain C9E88_RS02195 PF17191 RecG wedge domain C9E88_RS02195 PF00270 DEAD/DEAH box helicase C9E88_RS02195 PF00271 Helicase conserved C-terminal domain C9E88_RS02210 PF01553 Acyltransferase C9E88_RS02220 PF00375 Sodium:dicarboxylate symporter family C9E88_RS02230 PF01926 50S ribosome-binding GTPase C9E88_RS02235 PF02082 Transcriptional regulator C9E88_RS02240 PF00175 Oxidoreductase NAD-binding domain C9E88_RS02240 PF00970 Oxidoreductase FAD-binding domain C9E88_RS02240 PF00042 Globin C9E88_RS02245 PF05872 Bacterial protein of unknown function (DUF853) C9E88_RS02250 PF01053 Cys/Met metabolism PLP-dependent enzyme C9E88_RS02255 PF00117 Glutamine amidotransferase class-I C9E88_RS02260 PF00338 Ribosomal protein S10p/S20e C9E88_RS02265 PF00297 Ribosomal protein L3 C9E88_RS02270 PF00573 Ribosomal protein L4/L1 family C9E88_RS02275 PF00276 Ribosomal protein L23 C9E88_RS02280 PF00181 Ribosomal Proteins L2, RNA binding domain C9E88_RS02280 PF03947 Ribosomal Proteins L2, C-terminal domain C9E88_RS02285 PF00203 Ribosomal protein S19 C9E88_RS02290 PF00237 Ribosomal protein L22p/L17e C9E88_RS02295 PF07650 KH domain C9E88_RS02295 PF00189 Ribosomal protein S3, C-terminal domain C9E88_RS02300 PF00252 Ribosomal protein L16p/L10e C9E88_RS02305 PF00831 Ribosomal L29 protein C9E88_RS02310 PF00366 Ribosomal protein S17 C9E88_RS02315 PF00238 Ribosomal protein L14p/L23e C9E88_RS02320 PF00467 KOW motif C9E88_RS02320 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C9E88_RS02325 PF00281 Ribosomal protein L5 C9E88_RS02325 PF00673 ribosomal L5P family C-terminus C9E88_RS02330 PF00253 Ribosomal protein S14p/S29e C9E88_RS02335 PF00410 Ribosomal protein S8 C9E88_RS02340 PF00347 Ribosomal protein L6 C9E88_RS02345 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C9E88_RS02350 PF00333 Ribosomal protein S5, N-terminal domain C9E88_RS02350 PF03719 Ribosomal protein S5, C-terminal domain C9E88_RS02355 PF00327 Ribosomal protein L30p/L7e C9E88_RS02360 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C9E88_RS02365 PF00344 SecY translocase C9E88_RS02370 PF00444 Ribosomal protein L36 C9E88_RS02375 PF00416 Ribosomal protein S13/S18 C9E88_RS02380 PF00411 Ribosomal protein S11 C9E88_RS02385 PF00163 Ribosomal protein S4/S9 N-terminal domain C9E88_RS02385 PF01479 S4 domain C9E88_RS02390 PF01000 RNA polymerase Rpb3/RpoA insert domain C9E88_RS02390 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C9E88_RS02390 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C9E88_RS02395 PF01196 Ribosomal protein L17 C9E88_RS02400 PF00743 Flavin-binding monooxygenase-like C9E88_RS02410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS02410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS02410 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS02415 PF03937 Flavinator of succinate dehydrogenase C9E88_RS02440 PF00892 EamA-like transporter family C9E88_RS02450 PF09526 Probable metal-binding protein (DUF2387) C9E88_RS02455 PF01432 Peptidase family M3 C9E88_RS02470 PF00575 S1 RNA binding domain C9E88_RS02470 PF00773 RNB domain C9E88_RS02470 PF08461 Ribonuclease R winged-helix domain C9E88_RS02470 PF17876 Cold shock domain C9E88_RS02470 PF08206 Ribonuclease B OB domain C9E88_RS02505 PF01557 Fumarylacetoacetate (FAA) hydrolase family C9E88_RS02515 PF00892 EamA-like transporter family C9E88_RS02525 PF03631 Virulence factor BrkB C9E88_RS02530 PF03358 NADPH-dependent FMN reductase C9E88_RS02545 PF09084 NMT1/THI5 like C9E88_RS02580 PF02130 Uncharacterized protein family UPF0054 C9E88_RS02585 PF02562 PhoH-like protein C9E88_RS02590 PF01938 TRAM domain C9E88_RS02590 PF00919 Uncharacterized protein family UPF0004 C9E88_RS02590 PF04055 Radical SAM superfamily C9E88_RS02595 PF01551 Peptidase family M23 C9E88_RS02595 PF10145 Phage-related minor tail protein C9E88_RS02595 PF01464 Transglycosylase SLT domain C9E88_RS02605 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C9E88_RS02605 PF00056 lactate/malate dehydrogenase, NAD binding domain C9E88_RS02630 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C9E88_RS02635 PF01066 CDP-alcohol phosphatidyltransferase C9E88_RS02670 PF00403 Heavy-metal-associated domain C9E88_RS02670 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS02670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C9E88_RS02680 PF00753 Metallo-beta-lactamase superfamily C9E88_RS02680 PF04273 Putative phosphatase (DUF442) C9E88_RS02690 PF00085 Thioredoxin C9E88_RS02695 PF03061 Thioesterase superfamily C9E88_RS02710 PF04461 Protein of unknown function (DUF520) C9E88_RS02720 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C9E88_RS02720 PF01266 FAD dependent oxidoreductase C9E88_RS02730 PF03795 YCII-related domain C9E88_RS02735 PF04279 Intracellular septation protein A C9E88_RS02740 PF02811 PHP domain C9E88_RS02745 PF01062 Bestrophin, RFP-TM, chloride channel C9E88_RS02750 PF04002 RadC-like JAB domain C9E88_RS02755 PF02441 Flavoprotein C9E88_RS02755 PF04127 DNA / pantothenate metabolism flavoprotein C9E88_RS02760 PF01207 Dihydrouridine synthase (Dus) C9E88_RS02765 PF00589 Phage integrase family C9E88_RS02815 PF02673 Bacitracin resistance protein BacA C9E88_RS02820 PF03814 Potassium-transporting ATPase A subunit C9E88_RS02830 PF02669 K+-transporting ATPase, c chain C9E88_RS02835 PF13493 Domain of unknown function (DUF4118) C9E88_RS02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS02835 PF13492 GAF domain C9E88_RS02835 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS02835 PF02702 Osmosensitive K+ channel His kinase sensor domain C9E88_RS02840 PF00072 Response regulator receiver domain C9E88_RS02840 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS02845 PF00120 Glutamine synthetase, catalytic domain C9E88_RS02865 PF02384 N-6 DNA Methylase C9E88_RS02870 PF00270 DEAD/DEAH box helicase C9E88_RS02870 PF17191 RecG wedge domain C9E88_RS02870 PF13749 Putative ATP-dependent DNA helicase recG C-terminal C9E88_RS02875 PF01420 Type I restriction modification DNA specificity domain C9E88_RS02890 PF11867 Domain of unknown function (DUF3387) C9E88_RS02890 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C9E88_RS02890 PF18766 SWI2/SNF2 ATPase C9E88_RS02915 PF07690 Major Facilitator Superfamily C9E88_RS02925 PF00376 MerR family regulatory protein C9E88_RS02925 PF09278 MerR, DNA binding C9E88_RS02930 PF00892 EamA-like transporter family C9E88_RS02935 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C9E88_RS02935 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C9E88_RS02940 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C9E88_RS02945 PF02233 NAD(P) transhydrogenase beta subunit C9E88_RS02960 PF01261 Xylose isomerase-like TIM barrel C9E88_RS02965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C9E88_RS02965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C9E88_RS02970 PF00378 Enoyl-CoA hydratase/isomerase C9E88_RS02975 PF00672 HAMP domain C9E88_RS02975 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C9E88_RS02975 PF00072 Response regulator receiver domain C9E88_RS02975 PF01627 Hpt domain C9E88_RS02975 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS02975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS02980 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_RS02990 PF05958 tRNA (Uracil-5-)-methyltransferase C9E88_RS02995 PF02824 TGS domain C9E88_RS02995 PF13291 ACT domain C9E88_RS02995 PF04607 Region found in RelA / SpoT proteins C9E88_RS03005 PF02355 Protein export membrane protein C9E88_RS03005 PF07549 SecD/SecF GG Motif C9E88_RS03010 PF13721 SecD export protein N-terminal TM region C9E88_RS03010 PF07549 SecD/SecF GG Motif C9E88_RS03010 PF02355 Protein export membrane protein C9E88_RS03015 PF02699 Preprotein translocase subunit C9E88_RS03020 PF01702 Queuine tRNA-ribosyltransferase C9E88_RS03030 PF04011 LemA family C9E88_RS03040 PF02547 Queuosine biosynthesis protein C9E88_RS03055 PF03971 Monomeric isocitrate dehydrogenase C9E88_RS03065 PF03710 Glutamate-ammonia ligase adenylyltransferase C9E88_RS03065 PF08335 GlnD PII-uridylyltransferase C9E88_RS03070 PF01063 Amino-transferase class IV C9E88_RS03085 PF01522 Polysaccharide deacetylase C9E88_RS03090 PF00535 Glycosyl transferase family 2 C9E88_RS03095 PF00534 Glycosyl transferases group 1 C9E88_RS03095 PF13439 Glycosyltransferase Family 4 C9E88_RS03105 PF00534 Glycosyl transferases group 1 C9E88_RS03105 PF13439 Glycosyltransferase Family 4 C9E88_RS03110 PF00534 Glycosyl transferases group 1 C9E88_RS03110 PF13439 Glycosyltransferase Family 4 C9E88_RS03125 PF01336 OB-fold nucleic acid binding domain C9E88_RS03125 PF02938 GAD domain C9E88_RS03125 PF00152 tRNA synthetases class II (D, K and N) C9E88_RS03135 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS03135 PF00593 TonB dependent receptor C9E88_RS03155 PF06146 Phosphate-starvation-inducible E C9E88_RS03175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS03175 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS03175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS03175 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_RS03180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS03180 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS03180 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_RS03180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS03190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS03190 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS03190 PF00672 HAMP domain C9E88_RS03195 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS03195 PF00072 Response regulator receiver domain C9E88_RS03200 PF00324 Amino acid permease C9E88_RS03205 PF01757 Acyltransferase family C9E88_RS03215 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C9E88_RS03230 PF01923 Cobalamin adenosyltransferase C9E88_RS03235 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS03235 PF00593 TonB dependent receptor C9E88_RS03240 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS03240 PF00593 TonB dependent receptor C9E88_RS03245 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C9E88_RS03250 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_RS03280 PF12833 Helix-turn-helix domain C9E88_RS03280 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_RS03290 PF00290 Tryptophan synthase alpha chain C9E88_RS03295 PF01039 Carboxyl transferase domain C9E88_RS03300 PF02875 Mur ligase family, glutamate ligase domain C9E88_RS03300 PF08245 Mur ligase middle domain C9E88_RS03315 PF00753 Metallo-beta-lactamase superfamily C9E88_RS03320 PF10417 C-terminal domain of 1-Cys peroxiredoxin C9E88_RS03320 PF00578 AhpC/TSA family C9E88_RS03325 PF02810 SEC-C motif C9E88_RS03325 PF07517 SecA DEAD-like domain C9E88_RS03325 PF07516 SecA Wing and Scaffold domain C9E88_RS03325 PF01043 SecA preprotein cross-linking domain C9E88_RS03335 PF01960 ArgJ family C9E88_RS03340 PF02445 Quinolinate synthetase A protein C9E88_RS03365 PF13677 Membrane MotB of proton-channel complex MotA/MotB C9E88_RS03365 PF00691 OmpA family C9E88_RS03370 PF00563 EAL domain C9E88_RS03370 PF08448 PAS fold C9E88_RS03370 PF08447 PAS fold C9E88_RS03370 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS03430 PF04386 Stringent starvation protein B C9E88_RS03435 PF02798 Glutathione S-transferase, N-terminal domain C9E88_RS03435 PF00043 Glutathione S-transferase, C-terminal domain C9E88_RS03450 PF00380 Ribosomal protein S9/S16 C9E88_RS03455 PF00572 Ribosomal protein L13 C9E88_RS03460 PF04166 Pyridoxal phosphate biosynthetic protein PdxA C9E88_RS03465 PF00398 Ribosomal RNA adenine dimethylase C9E88_RS03470 PF00149 Calcineurin-like phosphoesterase C9E88_RS03505 PF16360 GTP-binding GTPase Middle Region C9E88_RS03505 PF13167 GTP-binding GTPase N-terminal C9E88_RS03505 PF01926 50S ribosome-binding GTPase C9E88_RS03510 PF01553 Acyltransferase C9E88_RS03515 PF13091 PLD-like domain C9E88_RS03520 PF10518 TAT (twin-arginine translocation) pathway signal sequence C9E88_RS03520 PF00149 Calcineurin-like phosphoesterase C9E88_RS03530 PF00083 Sugar (and other) transporter C9E88_RS03530 PF07690 Major Facilitator Superfamily C9E88_RS03535 PF03006 Haemolysin-III related C9E88_RS03565 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C9E88_RS03565 PF00378 Enoyl-CoA hydratase/isomerase C9E88_RS03565 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C9E88_RS03570 PF00108 Thiolase, N-terminal domain C9E88_RS03570 PF02803 Thiolase, C-terminal domain C9E88_RS03580 PF02311 AraC-like ligand binding domain C9E88_RS03580 PF12833 Helix-turn-helix domain C9E88_RS03585 PF02515 CoA-transferase family III C9E88_RS03590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C9E88_RS03590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C9E88_RS03600 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C9E88_RS03610 PF02803 Thiolase, C-terminal domain C9E88_RS03610 PF00108 Thiolase, N-terminal domain C9E88_RS03615 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS03615 PF00114 Pilin (bacterial filament) C9E88_RS03620 PF00691 OmpA family C9E88_RS03620 PF13505 Outer membrane protein beta-barrel domain C9E88_RS03630 PF00324 Amino acid permease C9E88_RS03635 PF05175 Methyltransferase small domain C9E88_RS03635 PF08468 Methyltransferase small domain N-terminal C9E88_RS03640 PF00860 Permease family C9E88_RS03645 PF03144 Elongation factor Tu domain 2 C9E88_RS03645 PF00679 Elongation factor G C-terminus C9E88_RS03645 PF00009 Elongation factor Tu GTP binding domain C9E88_RS03650 PF01741 Large-conductance mechanosensitive channel, MscL C9E88_RS03660 PF13520 Amino acid permease C9E88_RS03665 PF06751 Ethanolamine ammonia lyase large subunit (EutB) C9E88_RS03670 PF05985 Ethanolamine ammonia-lyase light chain (EutC) C9E88_RS03675 PF05552 Conserved TM helix C9E88_RS03695 PF13533 Biotin-lipoyl like C9E88_RS03725 PF03783 Curli production assembly/transport component CsgG C9E88_RS03735 PF05643 Putative bacterial lipoprotein (DUF799) C9E88_RS03745 PF01588 Putative tRNA binding domain C9E88_RS03745 PF09334 tRNA synthetases class I (M) C9E88_RS03755 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C9E88_RS03755 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C9E88_RS03755 PF06827 Zinc finger found in FPG and IleRS C9E88_RS03760 PF04966 Carbohydrate-selective porin, OprB family C9E88_RS03765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_RS03795 PF01571 Aminomethyltransferase folate-binding domain C9E88_RS03800 PF00694 Aconitase C-terminal domain C9E88_RS03800 PF00330 Aconitase family (aconitate hydratase) C9E88_RS03845 PF00849 RNA pseudouridylate synthase C9E88_RS03860 PF08274 PhnA Zinc-Ribbon C9E88_RS03860 PF03831 PhnA domain C9E88_RS03870 PF07411 Domain of unknown function (DUF1508) C9E88_RS03885 PF01594 AI-2E family transporter C9E88_RS03890 PF06674 Protein of unknown function (DUF1176) C9E88_RS03895 PF02581 Thiamine monophosphate synthase C9E88_RS03895 PF03070 TENA/THI-4/PQQC family C9E88_RS03895 PF08543 Phosphomethylpyrimidine kinase C9E88_RS03900 PF13419 Haloacid dehalogenase-like hydrolase C9E88_RS03915 PF04966 Carbohydrate-selective porin, OprB family C9E88_RS03920 PF01011 PQQ enzyme repeat C9E88_RS03925 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS03925 PF00593 TonB dependent receptor C9E88_RS03935 PF00268 Ribonucleotide reductase, small chain C9E88_RS03940 PF02867 Ribonucleotide reductase, barrel domain C9E88_RS03940 PF03477 ATP cone domain C9E88_RS03940 PF00317 Ribonucleotide reductase, all-alpha domain C9E88_RS03945 PF00072 Response regulator receiver domain C9E88_RS03945 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS03950 PF00672 HAMP domain C9E88_RS03950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS03950 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS03960 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C9E88_RS03965 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C9E88_RS03970 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C9E88_RS03970 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C9E88_RS03980 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C9E88_RS03980 PF10531 SLBB domain C9E88_RS03980 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C9E88_RS03985 PF00384 Molybdopterin oxidoreductase C9E88_RS03985 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C9E88_RS03985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C9E88_RS03990 PF00146 NADH dehydrogenase C9E88_RS03995 PF12838 4Fe-4S dicluster domain C9E88_RS04000 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C9E88_RS04005 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C9E88_RS04010 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C9E88_RS04010 PF00361 Proton-conducting membrane transporter C9E88_RS04015 PF00361 Proton-conducting membrane transporter C9E88_RS04020 PF00361 Proton-conducting membrane transporter C9E88_RS04035 PF13361 UvrD-like helicase C-terminal domain C9E88_RS04035 PF00580 UvrD/REP helicase N-terminal domain C9E88_RS04040 PF00692 dUTPase C9E88_RS04045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_RS04045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_RS04045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_RS04045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_RS04050 PF00696 Amino acid kinase family C9E88_RS04060 PF13230 Glutamine amidotransferases class-II C9E88_RS04065 PF01814 Hemerythrin HHE cation binding domain C9E88_RS04075 PF03658 RnfH family Ubiquitin C9E88_RS04080 PF04355 SmpA / OmlA family C9E88_RS04085 PF01475 Ferric uptake regulator family C9E88_RS04090 PF00437 Type II/IV secretion system protein C9E88_RS04095 PF00437 Type II/IV secretion system protein C9E88_RS04100 PF01168 Alanine racemase, N-terminal domain C9E88_RS04110 PF12320 Type 5 capsule protein repressor C-terminal domain C9E88_RS04110 PF00149 Calcineurin-like phosphoesterase C9E88_RS04130 PF01266 FAD dependent oxidoreductase C9E88_RS04140 PF00490 Delta-aminolevulinic acid dehydratase C9E88_RS04145 PF03061 Thioesterase superfamily C9E88_RS04150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_RS04150 PF00529 HlyD membrane-fusion protein of T1SS C9E88_RS04155 PF07690 Major Facilitator Superfamily C9E88_RS04160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C9E88_RS04160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C9E88_RS04200 PF08360 QacR-like protein, C-terminal region C9E88_RS04200 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS04210 PF07690 Major Facilitator Superfamily C9E88_RS04215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C9E88_RS04215 PF00378 Enoyl-CoA hydratase/isomerase C9E88_RS04215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C9E88_RS04220 PF13193 AMP-binding enzyme C-terminal domain C9E88_RS04220 PF00501 AMP-binding enzyme C9E88_RS04225 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS04225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS04225 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_RS04225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS04235 PF03573 outer membrane porin, OprD family C9E88_RS04240 PF00593 TonB dependent receptor C9E88_RS04240 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS04275 PF05992 SbmA/BacA-like family C9E88_RS04305 PF02934 GatB/GatE catalytic domain C9E88_RS04305 PF02637 GatB domain C9E88_RS04310 PF01425 Amidase C9E88_RS04315 PF02686 Glu-tRNAGln amidotransferase C subunit C9E88_RS04325 PF04085 rod shape-determining protein MreC C9E88_RS04330 PF04093 rod shape-determining protein MreD C9E88_RS04335 PF02545 Maf-like protein C9E88_RS04340 PF10150 Ribonuclease E/G family C9E88_RS04340 PF00575 S1 RNA binding domain C9E88_RS04345 PF06974 Protein of unknown function (DUF1298) C9E88_RS04345 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain C9E88_RS04350 PF01507 Phosphoadenosine phosphosulfate reductase family C9E88_RS04380 PF00324 Amino acid permease C9E88_RS04385 PF04303 PrpF protein C9E88_RS04390 PF00348 Polyprenyl synthetase C9E88_RS04395 PF00474 Sodium:solute symporter family C9E88_RS04400 PF01145 SPFH domain / Band 7 family C9E88_RS04410 PF01734 Patatin-like phospholipase C9E88_RS04425 PF08019 Phosphoethanolamine transferase EptA/EptB C9E88_RS04425 PF00884 Sulfatase C9E88_RS04430 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS04430 PF00072 Response regulator receiver domain C9E88_RS04435 PF08521 Two-component sensor kinase N-terminal C9E88_RS04435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS04435 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS04450 PF00909 Ammonium Transporter Family C9E88_RS04455 PF00005 ABC transporter C9E88_RS04460 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS04465 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS04470 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_RS04475 PF08448 PAS fold C9E88_RS04475 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS04495 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C9E88_RS04500 PF00133 tRNA synthetases class I (I, L, M and V) C9E88_RS04500 PF10458 Valyl tRNA synthetase tRNA binding arm C9E88_RS04500 PF08264 Anticodon-binding domain of tRNA C9E88_RS04520 PF01906 Putative heavy-metal-binding C9E88_RS04525 PF01906 Putative heavy-metal-binding C9E88_RS04530 PF02321 Outer membrane efflux protein C9E88_RS04535 PF00873 AcrB/AcrD/AcrF family C9E88_RS04540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_RS04540 PF00529 HlyD membrane-fusion protein of T1SS C9E88_RS04545 PF01569 PAP2 superfamily C9E88_RS04555 PF00348 Polyprenyl synthetase C9E88_RS04560 PF00829 Ribosomal prokaryotic L21 protein C9E88_RS04565 PF01016 Ribosomal L27 protein C9E88_RS04570 PF03548 Outer membrane lipoprotein carrier protein LolA C9E88_RS04580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C9E88_RS04580 PF02403 Seryl-tRNA synthetase N-terminal domain C9E88_RS04585 PF10414 Sirohaem synthase dimerisation region C9E88_RS04585 PF14824 Sirohaem biosynthesis protein central C9E88_RS04585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C9E88_RS04590 PF00588 SpoU rRNA Methylase family C9E88_RS04600 PF13520 Amino acid permease C9E88_RS04605 PF00465 Iron-containing alcohol dehydrogenase C9E88_RS04615 PF03099 Biotin/lipoate A/B protein ligase family C9E88_RS04620 PF04359 Protein of unknown function (DUF493) C9E88_RS04625 PF04542 Sigma-70 region 2 C9E88_RS04625 PF04546 Sigma-70, non-essential region C9E88_RS04625 PF04545 Sigma-70, region 4 C9E88_RS04625 PF03979 Sigma-70 factor, region 1.1 C9E88_RS04625 PF04539 Sigma-70 region 3 C9E88_RS04625 PF00140 Sigma-70 factor, region 1.2 C9E88_RS04645 PF09335 SNARE associated Golgi protein C9E88_RS04650 PF17773 UPF0176 acylphosphatase like domain C9E88_RS04650 PF00581 Rhodanese-like domain C9E88_RS04675 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C9E88_RS04690 PF02261 Aspartate decarboxylase C9E88_RS04695 PF01195 Peptidyl-tRNA hydrolase C9E88_RS04700 PF01386 Ribosomal L25p family C9E88_RS04705 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C9E88_RS04705 PF14572 Phosphoribosyl synthetase-associated domain C9E88_RS04730 PF08544 GHMP kinases C terminal C9E88_RS04730 PF00288 GHMP kinases N terminal domain C9E88_RS04735 PF03550 Outer membrane lipoprotein LolB C9E88_RS04745 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C9E88_RS04745 PF01488 Shikimate / quinate 5-dehydrogenase C9E88_RS04745 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C9E88_RS04750 PF08278 DNA primase DnaG DnaB-binding C9E88_RS04750 PF01807 CHC2 zinc finger C9E88_RS04750 PF10410 DnaB-helicase binding domain of primase C9E88_RS04750 PF08275 DNA primase catalytic core, N-terminal domain C9E88_RS04755 PF13525 Outer membrane lipoprotein C9E88_RS04760 PF00849 RNA pseudouridylate synthase C9E88_RS04760 PF01479 S4 domain C9E88_RS04765 PF02578 Multi-copper polyphenol oxidoreductase laccase C9E88_RS04780 PF01668 SmpB protein C9E88_RS04785 PF01467 Cytidylyltransferase-like C9E88_RS04790 PF00037 4Fe-4S binding domain C9E88_RS04810 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS04815 PF04072 Leucine carboxyl methyltransferase C9E88_RS04820 PF03449 Transcription elongation factor, N-terminal C9E88_RS04820 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_RS04825 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C9E88_RS04825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_RS04825 PF02142 MGS-like domain C9E88_RS04830 PF00117 Glutamine amidotransferase class-I C9E88_RS04830 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C9E88_RS04845 PF01985 CRS1 / YhbY (CRM) domain C9E88_RS04850 PF01728 FtsJ-like methyltransferase C9E88_RS04855 PF06480 FtsH Extracellular C9E88_RS04855 PF01434 Peptidase family M41 C9E88_RS04855 PF17862 AAA+ lid domain C9E88_RS04855 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS04860 PF00809 Pterin binding enzyme C9E88_RS04875 PF09423 PhoD-like phosphatase C9E88_RS04875 PF16655 PhoD-like phosphatase, N-terminal domain C9E88_RS04890 PF03600 Citrate transporter C9E88_RS04895 PF01595 Cyclin M transmembrane N-terminal domain C9E88_RS04895 PF03471 Transporter associated domain C9E88_RS04895 PF00571 CBS domain C9E88_RS04900 PF03466 LysR substrate binding domain C9E88_RS04900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS04905 PF00463 Isocitrate lyase family C9E88_RS04910 PF01219 Prokaryotic diacylglycerol kinase C9E88_RS04920 PF00873 AcrB/AcrD/AcrF family C9E88_RS04925 PF00571 CBS domain C9E88_RS04925 PF03448 MgtE intracellular N domain C9E88_RS04925 PF01769 Divalent cation transporter C9E88_RS04935 PF01435 Peptidase family M48 C9E88_RS04940 PF01464 Transglycosylase SLT domain C9E88_RS04940 PF01551 Peptidase family M23 C9E88_RS04940 PF10145 Phage-related minor tail protein C9E88_RS04950 PF01171 PP-loop family C9E88_RS04960 PF01464 Transglycosylase SLT domain C9E88_RS04960 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_RS04965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS04965 PF03466 LysR substrate binding domain C9E88_RS04970 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_RS04970 PF03449 Transcription elongation factor, N-terminal C9E88_RS04985 PF00596 Class II Aldolase and Adducin N-terminal domain C9E88_RS04990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_RS04990 PF11890 Domain of unknown function (DUF3410) C9E88_RS04990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_RS04995 PF00152 tRNA synthetases class II (D, K and N) C9E88_RS05005 PF01743 Poly A polymerase head domain C9E88_RS05005 PF12627 Probable RNA and SrmB- binding site of polymerase A C9E88_RS05010 PF01515 Phosphate acetyl/butaryl transferase C9E88_RS05010 PF03949 Malic enzyme, NAD binding domain C9E88_RS05010 PF00390 Malic enzyme, N-terminal domain C9E88_RS05015 PF00563 EAL domain C9E88_RS05015 PF00498 FHA domain C9E88_RS05015 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS05020 PF04452 RNA methyltransferase C9E88_RS05025 PF02219 Methylenetetrahydrofolate reductase C9E88_RS05030 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C9E88_RS05030 PF05221 S-adenosyl-L-homocysteine hydrolase C9E88_RS05045 PF08238 Sel1 repeat C9E88_RS05055 PF18073 Rubredoxin metal binding domain C9E88_RS05065 PF01235 Sodium:alanine symporter family C9E88_RS05090 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C9E88_RS05090 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C9E88_RS05095 PF01678 Diaminopimelate epimerase C9E88_RS05105 PF00589 Phage integrase family C9E88_RS05105 PF02899 Phage integrase, N-terminal SAM-like domain C9E88_RS05110 PF01425 Amidase C9E88_RS05120 PF01037 Lrp/AsnC ligand binding domain C9E88_RS05125 PF01810 LysE type translocator C9E88_RS05130 PF01012 Electron transfer flavoprotein domain C9E88_RS05135 PF01012 Electron transfer flavoprotein domain C9E88_RS05135 PF00766 Electron transfer flavoprotein FAD-binding domain C9E88_RS05140 PF00521 DNA gyrase/topoisomerase IV, subunit A C9E88_RS05140 PF03989 DNA gyrase C-terminal domain, beta-propeller C9E88_RS05155 PF00375 Sodium:dicarboxylate symporter family C9E88_RS05170 PF13533 Biotin-lipoyl like C9E88_RS05180 PF00266 Aminotransferase class-V C9E88_RS05190 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 C9E88_RS05205 PF12704 MacB-like periplasmic core domain C9E88_RS05205 PF02687 FtsX-like permease family C9E88_RS05210 PF00005 ABC transporter C9E88_RS05215 PF13567 Domain of unknown function (DUF4131) C9E88_RS05215 PF00753 Metallo-beta-lactamase superfamily C9E88_RS05215 PF03772 Competence protein C9E88_RS05225 PF06965 Na+/H+ antiporter 1 C9E88_RS05225 PF01343 Peptidase family S49 C9E88_RS05235 PF00551 Formyl transferase C9E88_RS05240 PF00586 AIR synthase related protein, N-terminal domain C9E88_RS05240 PF02769 AIR synthase related protein, C-terminal domain C9E88_RS05245 PF01594 AI-2E family transporter C9E88_RS05250 PF11638 DnaA N-terminal domain C9E88_RS05250 PF08299 Bacterial dnaA protein helix-turn-helix C9E88_RS05250 PF00308 Bacterial dnaA protein C9E88_RS05280 PF08032 RNA 2'-O ribose methyltransferase substrate binding C9E88_RS05280 PF00588 SpoU rRNA Methylase family C9E88_RS05285 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C9E88_RS05295 PF00691 OmpA family C9E88_RS05300 PF07676 WD40-like Beta Propeller Repeat C9E88_RS05300 PF04052 TolB amino-terminal domain C9E88_RS05310 PF02472 Biopolymer transport protein ExbD/TolR C9E88_RS05315 PF01618 MotA/TolQ/ExbB proton channel family C9E88_RS05320 PF03061 Thioesterase superfamily C9E88_RS05330 PF05496 Holliday junction DNA helicase RuvB P-loop domain C9E88_RS05330 PF05491 RuvB C-terminal winged helix domain C9E88_RS05330 PF17864 RuvB AAA lid domain C9E88_RS05335 PF07499 RuvA, C-terminal domain C9E88_RS05335 PF01330 RuvA N terminal domain C9E88_RS05345 PF01966 HD domain C9E88_RS05350 PF00884 Sulfatase C9E88_RS05355 PF01483 Proprotein convertase P-domain C9E88_RS05355 PF04389 Peptidase family M28 C9E88_RS05360 PF02769 AIR synthase related protein, C-terminal domain C9E88_RS05360 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C9E88_RS05360 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C9E88_RS05385 PF01784 NIF3 (NGG1p interacting factor 3) C9E88_RS05390 PF00881 Nitroreductase family C9E88_RS05395 PF00378 Enoyl-CoA hydratase/isomerase C9E88_RS05400 PF00293 NUDIX domain C9E88_RS05400 PF01467 Cytidylyltransferase-like C9E88_RS05405 PF04264 YceI-like domain C9E88_RS05410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS05410 PF03466 LysR substrate binding domain C9E88_RS05415 PF01810 LysE type translocator C9E88_RS05420 PF00578 AhpC/TSA family C9E88_RS05430 PF06508 Queuosine biosynthesis protein QueC C9E88_RS05435 PF04055 Radical SAM superfamily C9E88_RS05440 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C9E88_RS05440 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_RS05440 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS05455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS05455 PF03466 LysR substrate binding domain C9E88_RS05460 PF00005 ABC transporter C9E88_RS05460 PF12857 TOBE-like domain C9E88_RS05465 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS05470 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS05490 PF01063 Amino-transferase class IV C9E88_RS05495 PF02618 YceG-like family C9E88_RS05500 PF02223 Thymidylate kinase C9E88_RS05520 PF02910 Fumarate reductase flavoprotein C-term C9E88_RS05520 PF00890 FAD binding domain C9E88_RS05525 PF13180 PDZ domain C9E88_RS05535 PF00679 Elongation factor G C-terminus C9E88_RS05535 PF06421 GTP-binding protein LepA C-terminus C9E88_RS05535 PF00009 Elongation factor Tu GTP binding domain C9E88_RS05535 PF03144 Elongation factor Tu domain 2 C9E88_RS05540 PF10502 Signal peptidase, peptidase S26 C9E88_RS05550 PF00035 Double-stranded RNA binding motif C9E88_RS05550 PF14622 Ribonuclease-III-like C9E88_RS05555 PF01926 50S ribosome-binding GTPase C9E88_RS05555 PF07650 KH domain C9E88_RS05565 PF02565 Recombination protein O C terminal C9E88_RS05565 PF11967 Recombination protein O N terminal C9E88_RS05570 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C9E88_RS05575 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) C9E88_RS05600 PF00155 Aminotransferase class I and II C9E88_RS05605 PF00557 Metallopeptidase family M24 C9E88_RS05610 PF00318 Ribosomal protein S2 C9E88_RS05615 PF00889 Elongation factor TS C9E88_RS05645 PF05036 Sporulation related domain C9E88_RS05645 PF03330 Lytic transglycolase C9E88_RS05650 PF13406 Transglycosylase SLT domain C9E88_RS05665 PF14489 QueF-like protein C9E88_RS05665 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C9E88_RS05670 PF01061 ABC-2 type transporter C9E88_RS05675 PF00005 ABC transporter C9E88_RS05685 PF13356 Arm DNA-binding domain C9E88_RS05685 PF00589 Phage integrase family C9E88_RS05700 PF13737 Transposase DDE domain C9E88_RS05745 PF02661 Fic/DOC family C9E88_RS05745 PF13784 Fic/DOC family N-terminal C9E88_RS05780 PF12631 MnmE helical domain C9E88_RS05780 PF10396 GTP-binding protein TrmE N-terminus C9E88_RS05780 PF01926 50S ribosome-binding GTPase C9E88_RS05785 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C9E88_RS05785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_RS05820 PF13784 Fic/DOC family N-terminal C9E88_RS05820 PF02661 Fic/DOC family C9E88_RS05825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_RS05830 PF02687 FtsX-like permease family C9E88_RS05830 PF12704 MacB-like periplasmic core domain C9E88_RS05835 PF00005 ABC transporter C9E88_RS05845 PF04143 Sulphur transport C9E88_RS05855 PF00753 Metallo-beta-lactamase superfamily C9E88_RS05860 PF01925 Sulfite exporter TauE/SafE C9E88_RS05865 PF00581 Rhodanese-like domain C9E88_RS05880 PF03960 ArsC family C9E88_RS05895 PF01022 Bacterial regulatory protein, arsR family C9E88_RS05905 PF01758 Sodium Bile acid symporter family C9E88_RS05910 PF03358 NADPH-dependent FMN reductase C9E88_RS05920 PF13784 Fic/DOC family N-terminal C9E88_RS05920 PF02661 Fic/DOC family C9E88_RS05925 PF12804 MobA-like NTP transferase domain C9E88_RS05925 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_RS05925 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS05955 PF00464 Serine hydroxymethyltransferase C9E88_RS05960 PF14760 Rnk N-terminus C9E88_RS05960 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_RS05975 PF05816 Toxic anion resistance protein (TelA) C9E88_RS05985 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS05985 PF13192 Thioredoxin domain C9E88_RS05990 PF12838 4Fe-4S dicluster domain C9E88_RS05995 PF01136 Peptidase family U32 C9E88_RS05995 PF16325 Peptidase family U32 C-terminal domain C9E88_RS06000 PF01022 Bacterial regulatory protein, arsR family C9E88_RS06005 PF01451 Low molecular weight phosphotyrosine protein phosphatase C9E88_RS06010 PF01758 Sodium Bile acid symporter family C9E88_RS06015 PF03358 NADPH-dependent FMN reductase C9E88_RS06020 PF13411 MerR HTH family regulatory protein C9E88_RS06030 PF13296 Putative type VI secretion system Rhs element Vgr C9E88_RS06030 PF04717 Type VI secretion system, phage-baseplate injector C9E88_RS06030 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) C9E88_RS06065 PF00970 Oxidoreductase FAD-binding domain C9E88_RS06065 PF00175 Oxidoreductase NAD-binding domain C9E88_RS06070 PF01980 tRNA-methyltransferase O C9E88_RS06070 PF18389 TrmO C-terminal domain C9E88_RS06080 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C9E88_RS06080 PF00437 Type II/IV secretion system protein C9E88_RS06090 PF00072 Response regulator receiver domain C9E88_RS06090 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS06095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS06095 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS06095 PF08521 Two-component sensor kinase N-terminal C9E88_RS06105 PF00293 NUDIX domain C9E88_RS06115 PF14814 Bifunctional transglycosylase second domain C9E88_RS06115 PF00905 Penicillin binding protein transpeptidase domain C9E88_RS06115 PF00912 Transglycosylase C9E88_RS06120 PF01513 ATP-NAD kinase C9E88_RS06125 PF07023 Protein of unknown function (DUF1315) C9E88_RS06130 PF02885 Glycosyl transferase family, helical bundle domain C9E88_RS06130 PF00591 Glycosyl transferase family, a/b domain C9E88_RS06135 PF00375 Sodium:dicarboxylate symporter family C9E88_RS06140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS06140 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS06140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS06145 PF01965 DJ-1/PfpI family C9E88_RS06150 PF01817 Chorismate mutase type II C9E88_RS06150 PF00800 Prephenate dehydratase C9E88_RS06150 PF01842 ACT domain C9E88_RS06155 PF00155 Aminotransferase class I and II C9E88_RS06160 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C9E88_RS06180 PF03883 Peroxide stress protein YaaA C9E88_RS06185 PF00860 Permease family C9E88_RS06220 PF01351 Ribonuclease HII C9E88_RS06225 PF02599 Global regulator protein family C9E88_RS06230 PF01842 ACT domain C9E88_RS06230 PF00696 Amino acid kinase family C9E88_RS06230 PF13840 ACT domain C9E88_RS06235 PF02272 DHHA1 domain C9E88_RS06235 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C9E88_RS06235 PF01411 tRNA synthetases class II (A) C9E88_RS06240 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C9E88_RS06240 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C9E88_RS06255 PF03591 AzlC protein C9E88_RS06265 PF13393 Histidyl-tRNA synthetase C9E88_RS06270 PF00709 Adenylosuccinate synthetase C9E88_RS06275 PF01435 Peptidase family M48 C9E88_RS06290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_RS06295 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS06300 PF00768 D-alanyl-D-alanine carboxypeptidase C9E88_RS06300 PF07943 Penicillin-binding protein 5, C-terminal domain C9E88_RS06315 PF00849 RNA pseudouridylate synthase C9E88_RS06320 PF00155 Aminotransferase class I and II C9E88_RS06325 PF01641 SelR domain C9E88_RS06330 PF00255 Glutathione peroxidase C9E88_RS06345 PF00155 Aminotransferase class I and II C9E88_RS06350 PF08335 GlnD PII-uridylyltransferase C9E88_RS06350 PF01909 Nucleotidyltransferase domain C9E88_RS06350 PF01966 HD domain C9E88_RS06355 PF02222 ATP-grasp domain C9E88_RS06365 PF03591 AzlC protein C9E88_RS06375 PF13545 Crp-like helix-turn-helix domain C9E88_RS06375 PF00027 Cyclic nucleotide-binding domain C9E88_RS06395 PF01926 50S ribosome-binding GTPase C9E88_RS06395 PF06071 Protein of unknown function (DUF933) C9E88_RS06400 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS06415 PF00296 Luciferase-like monooxygenase C9E88_RS06425 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS06425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS06445 PF01709 Transcriptional regulator C9E88_RS06450 PF01553 Acyltransferase C9E88_RS06465 PF13737 Transposase DDE domain C9E88_RS06500 PF00875 DNA photolyase C9E88_RS06500 PF03441 FAD binding domain of DNA photolyase C9E88_RS06520 PF06968 Biotin and Thiamin Synthesis associated domain C9E88_RS06520 PF04055 Radical SAM superfamily C9E88_RS06525 PF08331 Domain of unknown function (DUF1730) C9E88_RS06530 PF03853 YjeF-related protein N-terminus C9E88_RS06530 PF01256 Carbohydrate kinase C9E88_RS06535 PF00708 Acylphosphatase C9E88_RS06540 PF02075 Crossover junction endodeoxyribonuclease RuvC C9E88_RS06550 PF01810 LysE type translocator C9E88_RS06565 PF13192 Thioredoxin domain C9E88_RS06565 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS06585 PF10417 C-terminal domain of 1-Cys peroxiredoxin C9E88_RS06585 PF00578 AhpC/TSA family C9E88_RS06590 PF00270 DEAD/DEAH box helicase C9E88_RS06590 PF11898 Domain of unknown function (DUF3418) C9E88_RS06590 PF04408 Helicase associated domain (HA2) C9E88_RS06590 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C9E88_RS06590 PF00271 Helicase conserved C-terminal domain C9E88_RS06595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C9E88_RS06595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C9E88_RS06610 PF14493 Helix-turn-helix domain C9E88_RS06610 PF05970 PIF1-like helicase C9E88_RS06625 PF04284 Protein of unknown function (DUF441) C9E88_RS06630 PF00849 RNA pseudouridylate synthase C9E88_RS06630 PF01479 S4 domain C9E88_RS06645 PF00849 RNA pseudouridylate synthase C9E88_RS06650 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C9E88_RS06655 PF08676 MutL C terminal dimerisation domain C9E88_RS06655 PF01119 DNA mismatch repair protein, C-terminal domain C9E88_RS06665 PF17209 Hfq protein C9E88_RS06670 PF00639 PPIC-type PPIASE domain C9E88_RS06670 PF09312 SurA N-terminal domain C9E88_RS06675 PF03968 OstA-like protein C9E88_RS06675 PF04453 LPS transport system D C9E88_RS06680 PF01636 Phosphotransferase enzyme family C9E88_RS06685 PF00483 Nucleotidyl transferase C9E88_RS06690 PF02527 rRNA small subunit methyltransferase G C9E88_RS06695 PF13614 AAA domain C9E88_RS06700 PF17762 HTH domain found in ParB protein C9E88_RS06700 PF02195 ParB-like nuclease domain C9E88_RS06705 PF01618 MotA/TolQ/ExbB proton channel family C9E88_RS06715 PF00664 ABC transporter transmembrane region C9E88_RS06715 PF00005 ABC transporter C9E88_RS06720 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C9E88_RS06725 PF02348 Cytidylyltransferase C9E88_RS06730 PF09115 DNA polymerase III, delta subunit, C terminal C9E88_RS06740 PF01026 TatD related DNase C9E88_RS06750 PF08334 Type II secretion system (T2SS), protein G C9E88_RS06750 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS06755 PF02501 Type II secretion system (T2SS), protein I C9E88_RS06755 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS06760 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS06760 PF11612 Type II secretion system (T2SS), protein J C9E88_RS06765 PF03934 Type II secretion system (T2SS), protein K C9E88_RS06775 PF03167 Uracil DNA glycosylase superfamily C9E88_RS06785 PF14437 MafB19-like deaminase C9E88_RS06795 PF02224 Cytidylate kinase C9E88_RS06800 PF00575 S1 RNA binding domain C9E88_RS06805 PF00216 Bacterial DNA-binding protein C9E88_RS06815 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C9E88_RS06825 PF03956 Lysine exporter LysO C9E88_RS06830 PF00743 Flavin-binding monooxygenase-like C9E88_RS06840 PF03969 AFG1-like ATPase C9E88_RS06845 PF01274 Malate synthase C9E88_RS06870 PF03471 Transporter associated domain C9E88_RS06870 PF03741 Integral membrane protein TerC family C9E88_RS06885 PF02110 Hydroxyethylthiazole kinase family C9E88_RS06900 PF01433 Peptidase family M1 domain C9E88_RS06900 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C9E88_RS06900 PF11940 Domain of unknown function (DUF3458) Ig-like fold C9E88_RS06915 PF00582 Universal stress protein family C9E88_RS06920 PF00582 Universal stress protein family C9E88_RS06930 PF00893 Small Multidrug Resistance protein C9E88_RS06935 PF08361 MAATS-type transcriptional repressor, C-terminal region C9E88_RS06935 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS06940 PF01810 LysE type translocator C9E88_RS06945 PF00923 Transaldolase/Fructose-6-phosphate aldolase C9E88_RS06950 PF03466 LysR substrate binding domain C9E88_RS06950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS06960 PF02803 Thiolase, C-terminal domain C9E88_RS06960 PF00108 Thiolase, N-terminal domain C9E88_RS06990 PF12170 DNA polymerase III tau subunit V interacting with alpha C9E88_RS06990 PF12169 DNA polymerase III subunits gamma and tau domain III C9E88_RS06990 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C9E88_RS06995 PF03061 Thioesterase superfamily C9E88_RS07005 PF00465 Iron-containing alcohol dehydrogenase C9E88_RS07010 PF01451 Low molecular weight phosphotyrosine protein phosphatase C9E88_RS07015 PF01565 FAD binding domain C9E88_RS07015 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C9E88_RS07030 PF01645 Conserved region in glutamate synthase C9E88_RS07040 PF14403 Circularly permuted ATP-grasp type 2 C9E88_RS07050 PF08379 Bacterial transglutaminase-like N-terminal region C9E88_RS07050 PF01841 Transglutaminase-like superfamily C9E88_RS07065 PF01168 Alanine racemase, N-terminal domain C9E88_RS07065 PF00842 Alanine racemase, C-terminal domain C9E88_RS07070 PF00772 DnaB-like helicase N terminal domain C9E88_RS07070 PF03796 DnaB-like helicase C terminal domain C9E88_RS07075 PF01281 Ribosomal protein L9, N-terminal domain C9E88_RS07075 PF03948 Ribosomal protein L9, C-terminal domain C9E88_RS07080 PF01084 Ribosomal protein S18 C9E88_RS07085 PF01250 Ribosomal protein S6 C9E88_RS07100 PF01040 UbiA prenyltransferase family C9E88_RS07105 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C9E88_RS07110 PF00510 Cytochrome c oxidase subunit III C9E88_RS07115 PF00115 Cytochrome C and Quinol oxidase polypeptide I C9E88_RS07120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C9E88_RS07120 PF06481 COX Aromatic Rich Motif C9E88_RS07130 PF00391 PEP-utilising enzyme, mobile domain C9E88_RS07130 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C9E88_RS07130 PF02896 PEP-utilising enzyme, TIM barrel domain C9E88_RS07135 PF03618 Kinase/pyrophosphorylase C9E88_RS07145 PF00296 Luciferase-like monooxygenase C9E88_RS07165 PF00472 RF-1 domain C9E88_RS07165 PF03462 PCRF domain C9E88_RS07170 PF17827 PrmC N-terminal domain C9E88_RS07170 PF13847 Methyltransferase domain C9E88_RS07175 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS07180 PF09084 NMT1/THI5 like C9E88_RS07190 PF12833 Helix-turn-helix domain C9E88_RS07190 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_RS07195 PF00106 short chain dehydrogenase C9E88_RS07200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS07200 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS07200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS07205 PF13193 AMP-binding enzyme C-terminal domain C9E88_RS07205 PF00501 AMP-binding enzyme C9E88_RS07210 PF07690 Major Facilitator Superfamily C9E88_RS07215 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS07215 PF13977 BetI-type transcriptional repressor, C-terminal C9E88_RS07220 PF00899 ThiF family C9E88_RS07225 PF03109 ABC1 family C9E88_RS07230 PF02152 Dihydroneopterin aldolase C9E88_RS07245 PF03232 Ubiquinone biosynthesis protein COQ7 C9E88_RS07250 PF07690 Major Facilitator Superfamily C9E88_RS07255 PF01103 Surface antigen C9E88_RS07255 PF07244 Surface antigen variable number repeat C9E88_RS07255 PF17243 POTRA domain TamA domain 1 C9E88_RS07280 PF13742 OB-fold nucleic acid binding domain C9E88_RS07280 PF02601 Exonuclease VII, large subunit C9E88_RS07305 PF11799 impB/mucB/samB family C-terminal domain C9E88_RS07305 PF11798 IMS family HHH motif C9E88_RS07305 PF00817 impB/mucB/samB family C9E88_RS07305 PF13438 Domain of unknown function (DUF4113) C9E88_RS07310 PF00717 Peptidase S24-like C9E88_RS07335 PF11791 Aconitate B N-terminal domain C9E88_RS07335 PF06434 Aconitate hydratase 2 N-terminus C9E88_RS07335 PF00330 Aconitase family (aconitate hydratase) C9E88_RS07340 PF13737 Transposase DDE domain C9E88_RS07355 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain C9E88_RS07355 PF00589 Phage integrase family C9E88_RS07390 PF00145 C-5 cytosine-specific DNA methylase C9E88_RS07400 PF00717 Peptidase S24-like C9E88_RS07405 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT C9E88_RS07430 PF11638 DnaA N-terminal domain C9E88_RS07430 PF00308 Bacterial dnaA protein C9E88_RS07430 PF08299 Bacterial dnaA protein helix-turn-helix C9E88_RS07505 PF00313 'Cold-shock' DNA-binding domain C9E88_RS07515 PF00313 'Cold-shock' DNA-binding domain C9E88_RS07570 PF07030 Protein of unknown function (DUF1320) C9E88_RS07685 PF01292 Prokaryotic cytochrome b561 C9E88_RS07715 PF03869 Arc-like DNA binding domain C9E88_RS07735 PF07690 Major Facilitator Superfamily C9E88_RS07745 PF00565 Staphylococcal nuclease homologue C9E88_RS07750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS07750 PF03466 LysR substrate binding domain C9E88_RS07755 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS07755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS07755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS07770 PF00106 short chain dehydrogenase C9E88_RS07775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C9E88_RS07775 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C9E88_RS07800 PF00892 EamA-like transporter family C9E88_RS07805 PF00392 Bacterial regulatory proteins, gntR family C9E88_RS07805 PF00155 Aminotransferase class I and II C9E88_RS07820 PF13091 PLD-like domain C9E88_RS07825 PF08240 Alcohol dehydrogenase GroES-like domain C9E88_RS07825 PF00107 Zinc-binding dehydrogenase C9E88_RS07830 PF00175 Oxidoreductase NAD-binding domain C9E88_RS07835 PF00487 Fatty acid desaturase C9E88_RS07840 PF00793 DAHP synthetase I family C9E88_RS07845 PF00437 Type II/IV secretion system protein C9E88_RS07850 PF01597 Glycine cleavage H-protein C9E88_RS07855 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_RS07855 PF12833 Helix-turn-helix domain C9E88_RS07865 PF00005 ABC transporter C9E88_RS07865 PF00664 ABC transporter transmembrane region C9E88_RS07875 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) C9E88_RS07885 PF00375 Sodium:dicarboxylate symporter family C9E88_RS07890 PF00916 Sulfate permease family C9E88_RS07890 PF01740 STAS domain C9E88_RS07900 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_RS07905 PF00403 Heavy-metal-associated domain C9E88_RS07910 PF00376 MerR family regulatory protein C9E88_RS07910 PF09278 MerR, DNA binding C9E88_RS07920 PF08360 QacR-like protein, C-terminal region C9E88_RS07920 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS07925 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_RS07925 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS07925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS07925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS07930 PF00108 Thiolase, N-terminal domain C9E88_RS07930 PF02803 Thiolase, C-terminal domain C9E88_RS07935 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C9E88_RS07935 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C9E88_RS07940 PF13737 Transposase DDE domain C9E88_RS07945 PF00140 Sigma-70 factor, region 1.2 C9E88_RS07945 PF04545 Sigma-70, region 4 C9E88_RS07945 PF04539 Sigma-70 region 3 C9E88_RS07945 PF04542 Sigma-70 region 2 C9E88_RS07950 PF13419 Haloacid dehalogenase-like hydrolase C9E88_RS07955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS07955 PF03466 LysR substrate binding domain C9E88_RS07960 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C9E88_RS07965 PF00005 ABC transporter C9E88_RS07970 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS07975 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C9E88_RS07990 PF02785 Biotin carboxylase C-terminal domain C9E88_RS07990 PF00289 Biotin carboxylase, N-terminal domain C9E88_RS07990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_RS07990 PF18140 Propionyl-coenzyme A carboxylase BT domain C9E88_RS07990 PF00364 Biotin-requiring enzyme C9E88_RS08020 PF00106 short chain dehydrogenase C9E88_RS08025 PF01638 HxlR-like helix-turn-helix C9E88_RS08035 PF00881 Nitroreductase family C9E88_RS08040 PF10005 zinc-ribbon domain C9E88_RS08040 PF15887 Putative zinc-binding metallo-peptidase C9E88_RS08045 PF01402 Ribbon-helix-helix protein, copG family C9E88_RS08045 PF08753 NikR C terminal nickel binding domain C9E88_RS08055 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_RS08070 PF02082 Transcriptional regulator C9E88_RS08075 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS08085 PF01717 Cobalamin-independent synthase, Catalytic domain C9E88_RS08090 PF01613 Flavin reductase like domain C9E88_RS08095 PF01925 Sulfite exporter TauE/SafE C9E88_RS08100 PF00893 Small Multidrug Resistance protein C9E88_RS08115 PF00005 ABC transporter C9E88_RS08125 PF02146 Sir2 family C9E88_RS08140 PF07690 Major Facilitator Superfamily C9E88_RS08150 PF01979 Amidohydrolase family C9E88_RS08155 PF00355 Rieske [2Fe-2S] domain C9E88_RS08160 PF14437 MafB19-like deaminase C9E88_RS08165 PF02608 ABC transporter substrate-binding protein PnrA-like C9E88_RS08170 PF14226 non-haem dioxygenase in morphine synthesis N-terminal C9E88_RS08170 PF03171 2OG-Fe(II) oxygenase superfamily C9E88_RS08175 PF02608 ABC transporter substrate-binding protein PnrA-like C9E88_RS08180 PF00005 ABC transporter C9E88_RS08185 PF02653 Branched-chain amino acid transport system / permease component C9E88_RS08190 PF02653 Branched-chain amino acid transport system / permease component C9E88_RS08195 PF01979 Amidohydrolase family C9E88_RS08200 PF12146 Serine aminopeptidase, S33 C9E88_RS08205 PF02803 Thiolase, C-terminal domain C9E88_RS08205 PF00108 Thiolase, N-terminal domain C9E88_RS08210 PF01144 Coenzyme A transferase C9E88_RS08215 PF01144 Coenzyme A transferase C9E88_RS08220 PF03594 Benzoate membrane transport protein C9E88_RS08225 PF00106 short chain dehydrogenase C9E88_RS08230 PF00970 Oxidoreductase FAD-binding domain C9E88_RS08230 PF00111 2Fe-2S iron-sulfur cluster binding domain C9E88_RS08230 PF00175 Oxidoreductase NAD-binding domain C9E88_RS08235 PF00866 Ring hydroxylating beta subunit C9E88_RS08240 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C9E88_RS08240 PF00355 Rieske [2Fe-2S] domain C9E88_RS08245 PF00775 Dioxygenase C9E88_RS08245 PF04444 Catechol dioxygenase N terminus C9E88_RS08250 PF02426 Muconolactone delta-isomerase C9E88_RS08255 PF13378 Enolase C-terminal domain-like C9E88_RS08255 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain C9E88_RS08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS08260 PF03466 LysR substrate binding domain C9E88_RS08265 PF07690 Major Facilitator Superfamily C9E88_RS08275 PF00155 Aminotransferase class I and II C9E88_RS08275 PF00392 Bacterial regulatory proteins, gntR family C9E88_RS08280 PF13193 AMP-binding enzyme C-terminal domain C9E88_RS08280 PF00501 AMP-binding enzyme C9E88_RS08320 PF03949 Malic enzyme, NAD binding domain C9E88_RS08320 PF00390 Malic enzyme, N-terminal domain C9E88_RS08325 PF00892 EamA-like transporter family C9E88_RS08330 PF04172 LrgB-like family C9E88_RS08335 PF03788 LrgA family C9E88_RS08340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS08340 PF03466 LysR substrate binding domain C9E88_RS08355 PF00576 HIUase/Transthyretin family C9E88_RS08360 PF00860 Permease family C9E88_RS08365 PF04115 Ureidoglycolate lyase C9E88_RS08370 PF03561 Allantoicase repeat C9E88_RS08375 PF01494 FAD binding domain C9E88_RS08380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS08380 PF03466 LysR substrate binding domain C9E88_RS08385 PF00005 ABC transporter C9E88_RS08395 PF07690 Major Facilitator Superfamily C9E88_RS08400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C9E88_RS08400 PF04324 BFD-like [2Fe-2S] binding domain C9E88_RS08400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C9E88_RS08400 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS08400 PF18267 Rubredoxin NAD+ reductase C-terminal domain C9E88_RS08405 PF04324 BFD-like [2Fe-2S] binding domain C9E88_RS08405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C9E88_RS08405 PF18267 Rubredoxin NAD+ reductase C-terminal domain C9E88_RS08405 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS08405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C9E88_RS08410 PF00384 Molybdopterin oxidoreductase C9E88_RS08410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C9E88_RS08410 PF04324 BFD-like [2Fe-2S] binding domain C9E88_RS08410 PF01568 Molydopterin dinucleotide binding domain C9E88_RS08415 PF12804 MobA-like NTP transferase domain C9E88_RS08420 PF04055 Radical SAM superfamily C9E88_RS08420 PF06463 Molybdenum Cofactor Synthesis C C9E88_RS08430 PF02391 MoaE protein C9E88_RS08435 PF00994 Probable molybdopterin binding domain C9E88_RS08435 PF01967 MoaC family C9E88_RS08440 PF03453 MoeA N-terminal region (domain I and II) C9E88_RS08440 PF00994 Probable molybdopterin binding domain C9E88_RS08440 PF03454 MoeA C-terminal region (domain IV) C9E88_RS08450 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS08455 PF00005 ABC transporter C9E88_RS08455 PF03459 TOBE domain C9E88_RS08460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C9E88_RS08460 PF14824 Sirohaem biosynthesis protein central C9E88_RS08460 PF10414 Sirohaem synthase dimerisation region C9E88_RS08465 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS08465 PF00593 TonB dependent receptor C9E88_RS08470 PF00171 Aldehyde dehydrogenase family C9E88_RS08475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS08475 PF12806 Acetyl-CoA dehydrogenase C-terminal like C9E88_RS08475 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS08475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS08480 PF12833 Helix-turn-helix domain C9E88_RS08480 PF02311 AraC-like ligand binding domain C9E88_RS08505 PF00561 alpha/beta hydrolase fold C9E88_RS08510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C9E88_RS08515 PF01494 FAD binding domain C9E88_RS08520 PF01557 Fumarylacetoacetate (FAA) hydrolase family C9E88_RS08550 PF02321 Outer membrane efflux protein C9E88_RS08560 PF00873 AcrB/AcrD/AcrF family C9E88_RS08570 PF09905 DNA-binding protein VF530 C9E88_RS08575 PF00873 AcrB/AcrD/AcrF family C9E88_RS08585 PF02321 Outer membrane efflux protein C9E88_RS08590 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS08595 PF13657 HipA N-terminal domain C9E88_RS08595 PF07804 HipA-like C-terminal domain C9E88_RS08615 PF01425 Amidase C9E88_RS08620 PF18393 MotY N-terminal domain C9E88_RS08620 PF00691 OmpA family C9E88_RS08630 PF06761 Intracellular multiplication and human macrophage-killing C9E88_RS08630 PF06744 Type VI secretion protein IcmF C-terminal C9E88_RS08630 PF14331 ImcF-related N-terminal domain C9E88_RS08645 PF05947 Type VI secretion system, TssF C9E88_RS08660 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath C9E88_RS08675 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS08675 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_RS08675 PF17871 AAA lid domain C9E88_RS08675 PF07724 AAA domain (Cdc48 subfamily) C9E88_RS08680 PF06812 ImpA, N-terminal, type VI secretion system C9E88_RS08685 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE C9E88_RS08705 PF12697 Alpha/beta hydrolase family C9E88_RS08710 PF04273 Putative phosphatase (DUF442) C9E88_RS08710 PF00753 Metallo-beta-lactamase superfamily C9E88_RS08720 PF04143 Sulphur transport C9E88_RS08745 PF01220 Dehydroquinase class II C9E88_RS08750 PF00364 Biotin-requiring enzyme C9E88_RS08755 PF00289 Biotin carboxylase, N-terminal domain C9E88_RS08755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_RS08755 PF02785 Biotin carboxylase C-terminal domain C9E88_RS08765 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS08770 PF12832 MFS_1 like family C9E88_RS08785 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS08785 PF07694 5TMR of 5TMR-LYT C9E88_RS08815 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) C9E88_RS08830 PF02881 SRP54-type protein, helical bundle domain C9E88_RS08830 PF00448 SRP54-type protein, GTPase domain C9E88_RS08835 PF00675 Insulinase (Peptidase family M16) C9E88_RS08835 PF05193 Peptidase M16 inactive domain C9E88_RS08865 PF00571 CBS domain C9E88_RS08875 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_RS08885 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS08885 PF01434 Peptidase family M41 C9E88_RS08885 PF17862 AAA+ lid domain C9E88_RS08895 PF05166 YcgL domain C9E88_RS08905 PF00570 HRDC domain C9E88_RS08905 PF01612 3'-5' exonuclease C9E88_RS08910 PF13662 Toprim domain C9E88_RS08910 PF02132 RecR protein C9E88_RS08915 PF02575 YbaB/EbfC DNA-binding family C9E88_RS08920 PF01053 Cys/Met metabolism PLP-dependent enzyme C9E88_RS08930 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C9E88_RS08930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C9E88_RS08940 PF01230 HIT domain C9E88_RS08945 PF00267 Gram-negative porin C9E88_RS08955 PF01654 Cytochrome bd terminal oxidase subunit I C9E88_RS08960 PF02322 Cytochrome bd terminal oxidase subunit II C9E88_RS08965 PF08173 Membrane bound YbgT-like protein C9E88_RS08985 PF01098 Cell cycle protein C9E88_RS08990 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C9E88_RS08995 PF04977 Septum formation initiator C9E88_RS09000 PF00113 Enolase, C-terminal TIM barrel domain C9E88_RS09000 PF03952 Enolase, N-terminal domain C9E88_RS09005 PF00793 DAHP synthetase I family C9E88_RS09010 PF06418 CTP synthase N-terminus C9E88_RS09010 PF00117 Glutamine amidotransferase class-I C9E88_RS09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS09020 PF03466 LysR substrate binding domain C9E88_RS09025 PF00248 Aldo/keto reductase family C9E88_RS09030 PF07690 Major Facilitator Superfamily C9E88_RS09045 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS09045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_RS09055 PF12697 Alpha/beta hydrolase family C9E88_RS09060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS09060 PF03466 LysR substrate binding domain C9E88_RS09065 PF00557 Metallopeptidase family M24 C9E88_RS09070 PF05525 Branched-chain amino acid transport protein C9E88_RS09105 PF00206 Lyase C9E88_RS09105 PF10415 Fumarase C C-terminus C9E88_RS09110 PF16363 GDP-mannose 4,6 dehydratase C9E88_RS09120 PF02635 DsrE/DsrF-like family C9E88_RS09140 PF01638 HxlR-like helix-turn-helix C9E88_RS09150 PF02654 Cobalamin-5-phosphate synthase C9E88_RS09160 PF02277 Phosphoribosyltransferase C9E88_RS09165 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase C9E88_RS09175 PF13419 Haloacid dehalogenase-like hydrolase C9E88_RS09185 PF00593 TonB dependent receptor C9E88_RS09185 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS09190 PF07690 Major Facilitator Superfamily C9E88_RS09205 PF04183 IucA / IucC family C9E88_RS09205 PF06276 Ferric iron reductase FhuF-like transporter C9E88_RS09210 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) C9E88_RS09215 PF06276 Ferric iron reductase FhuF-like transporter C9E88_RS09215 PF04183 IucA / IucC family C9E88_RS09220 PF04073 Aminoacyl-tRNA editing domain C9E88_RS09225 PF00487 Fatty acid desaturase C9E88_RS09230 PF12833 Helix-turn-helix domain C9E88_RS09230 PF12852 Cupin C9E88_RS09240 PF02684 Lipid-A-disaccharide synthetase C9E88_RS09250 PF01925 Sulfite exporter TauE/SafE C9E88_RS09255 PF00793 DAHP synthetase I family C9E88_RS09265 PF02542 YgbB family C9E88_RS09275 PF01266 FAD dependent oxidoreductase C9E88_RS09295 PF01264 Chorismate synthase C9E88_RS09300 PF05175 Methyltransferase small domain C9E88_RS09315 PF03109 ABC1 family C9E88_RS09320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS09320 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS09320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS09325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS09325 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS09325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS09330 PF00583 Acetyltransferase (GNAT) family C9E88_RS09345 PF00994 Probable molybdopterin binding domain C9E88_RS09345 PF02464 Competence-damaged protein C9E88_RS09345 PF18146 Damage-inducible protein CinA KH domain C9E88_RS09350 PF00285 Citrate synthase, C-terminal domain C9E88_RS09365 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C9E88_RS09365 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C9E88_RS09375 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C9E88_RS09380 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS09380 PF02861 Clp amino terminal domain, pathogenicity island component C9E88_RS09380 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_RS09380 PF07724 AAA domain (Cdc48 subfamily) C9E88_RS09380 PF17871 AAA lid domain C9E88_RS09385 PF02617 ATP-dependent Clp protease adaptor protein ClpS C9E88_RS09395 PF02774 Semialdehyde dehydrogenase, dimerisation domain C9E88_RS09395 PF01118 Semialdehyde dehydrogenase, NAD binding domain C9E88_RS09405 PF00535 Glycosyl transferase family 2 C9E88_RS09410 PF13359 DDE superfamily endonuclease C9E88_RS09410 PF13613 Helix-turn-helix of DDE superfamily endonuclease C9E88_RS09425 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C9E88_RS09430 PF00291 Pyridoxal-phosphate dependent enzyme C9E88_RS09430 PF00585 C-terminal regulatory domain of Threonine dehydratase C9E88_RS09445 PF02254 TrkA-N domain C9E88_RS09445 PF02080 TrkA-C domain C9E88_RS09450 PF02386 Cation transport protein C9E88_RS09455 PF02253 Phospholipase A1 C9E88_RS09460 PF05193 Peptidase M16 inactive domain C9E88_RS09460 PF00675 Insulinase (Peptidase family M16) C9E88_RS09460 PF08367 Peptidase M16C associated C9E88_RS09475 PF00294 pfkB family carbohydrate kinase C9E88_RS09485 PF07290 Protein of unknown function (DUF1449) C9E88_RS09505 PF00561 alpha/beta hydrolase fold C9E88_RS09515 PF09312 SurA N-terminal domain C9E88_RS09520 PF00216 Bacterial DNA-binding protein C9E88_RS09535 PF02082 Transcriptional regulator C9E88_RS09540 PF00266 Aminotransferase class-V C9E88_RS09545 PF01592 NifU-like N terminal domain C9E88_RS09550 PF01521 Iron-sulphur cluster biosynthesis C9E88_RS09555 PF07743 HSCB C-terminal oligomerisation domain C9E88_RS09555 PF00226 DnaJ domain C9E88_RS09560 PF00012 Hsp70 protein C9E88_RS09565 PF00111 2Fe-2S iron-sulfur cluster binding domain C9E88_RS09570 PF00211 Adenylate and Guanylate cyclase catalytic domain C9E88_RS09580 PF02559 CarD-like/TRCF domain C9E88_RS09580 PF03461 TRCF domain C9E88_RS09580 PF17757 UvrB interaction domain C9E88_RS09580 PF00271 Helicase conserved C-terminal domain C9E88_RS09580 PF00270 DEAD/DEAH box helicase C9E88_RS09590 PF10415 Fumarase C C-terminus C9E88_RS09590 PF00206 Lyase C9E88_RS09595 PF00474 Sodium:solute symporter family C9E88_RS09600 PF01037 Lrp/AsnC ligand binding domain C9E88_RS09605 PF00171 Aldehyde dehydrogenase family C9E88_RS09605 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C9E88_RS09605 PF14850 DNA-binding domain of Proline dehydrogenase C9E88_RS09605 PF01619 Proline dehydrogenase C9E88_RS09610 PF05958 tRNA (Uracil-5-)-methyltransferase C9E88_RS09630 PF00580 UvrD/REP helicase N-terminal domain C9E88_RS09630 PF13361 UvrD-like helicase C-terminal domain C9E88_RS09635 PF01062 Bestrophin, RFP-TM, chloride channel C9E88_RS09640 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C9E88_RS09640 PF00749 tRNA synthetases class I (E and Q), catalytic domain C9E88_RS09645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C9E88_RS09650 PF00149 Calcineurin-like phosphoesterase C9E88_RS09655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS09655 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS09655 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS09660 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS09660 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS09660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS09665 PF00296 Luciferase-like monooxygenase C9E88_RS09675 PF03328 HpcH/HpaI aldolase/citrate lyase family C9E88_RS09685 PF00881 Nitroreductase family C9E88_RS09700 PF01116 Fructose-bisphosphate aldolase class-II C9E88_RS09710 PF00162 Phosphoglycerate kinase C9E88_RS09720 PF02545 Maf-like protein C9E88_RS09735 PF08007 Cupin superfamily protein C9E88_RS09740 PF05231 MASE1 C9E88_RS09740 PF07730 Histidine kinase C9E88_RS09740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS09745 PF00196 Bacterial regulatory proteins, luxR family C9E88_RS09745 PF00072 Response regulator receiver domain C9E88_RS09755 PF03737 Aldolase/RraA C9E88_RS09760 PF13460 NAD(P)H-binding C9E88_RS09765 PF01649 Ribosomal protein S20 C9E88_RS09780 PF00459 Inositol monophosphatase family C9E88_RS09785 PF13419 Haloacid dehalogenase-like hydrolase C9E88_RS09790 PF01479 S4 domain C9E88_RS09795 PF00154 recA bacterial DNA recombination protein C9E88_RS09800 PF02631 RecX family C9E88_RS09815 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C9E88_RS09815 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS09820 PF07977 FabA-like domain C9E88_RS09825 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C9E88_RS09825 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS09835 PF07244 Surface antigen variable number repeat C9E88_RS09835 PF01103 Surface antigen C9E88_RS09840 PF13180 PDZ domain C9E88_RS09840 PF02163 Peptidase family M50 C9E88_RS09840 PF17820 PDZ domain C9E88_RS09845 PF13288 DXP reductoisomerase C-terminal domain C9E88_RS09845 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C9E88_RS09845 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C9E88_RS09855 PF01255 Putative undecaprenyl diphosphate synthase C9E88_RS09860 PF01765 Ribosome recycling factor C9E88_RS09865 PF00696 Amino acid kinase family C9E88_RS09870 PF18693 TRAM domain C9E88_RS09870 PF00919 Uncharacterized protein family UPF0004 C9E88_RS09870 PF04055 Radical SAM superfamily C9E88_RS09875 PF00989 PAS fold C9E88_RS09875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS09875 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS09880 PF00158 Sigma-54 interaction domain C9E88_RS09880 PF00072 Response regulator receiver domain C9E88_RS09880 PF02954 Bacterial regulatory protein, Fis family C9E88_RS09890 PF07690 Major Facilitator Superfamily C9E88_RS09895 PF13737 Transposase DDE domain C9E88_RS09900 PF01134 Glucose inhibited division protein A C9E88_RS09900 PF13932 GidA associated domain C9E88_RS09930 PF02954 Bacterial regulatory protein, Fis family C9E88_RS09935 PF02142 MGS-like domain C9E88_RS09935 PF01808 AICARFT/IMPCHase bienzyme C9E88_RS09940 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C9E88_RS09940 PF02843 Phosphoribosylglycinamide synthetase, C domain C9E88_RS09940 PF02844 Phosphoribosylglycinamide synthetase, N domain C9E88_RS09950 PF13302 Acetyltransferase (GNAT) domain C9E88_RS09965 PF03180 NLPA lipoprotein C9E88_RS09970 PF09383 NIL domain C9E88_RS09970 PF00005 ABC transporter C9E88_RS09975 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS09985 PF01336 OB-fold nucleic acid binding domain C9E88_RS09985 PF02811 PHP domain C9E88_RS09985 PF14579 Helix-hairpin-helix motif C9E88_RS09985 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C9E88_RS09985 PF07733 Bacterial DNA polymerase III alpha NTPase domain C9E88_RS09990 PF00588 SpoU rRNA Methylase family C9E88_RS09995 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS10015 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS10020 PF00488 MutS domain V C9E88_RS10020 PF01624 MutS domain I C9E88_RS10020 PF05188 MutS domain II C9E88_RS10020 PF05192 MutS domain III C9E88_RS10020 PF05190 MutS family domain IV C9E88_RS10025 PF11953 Domain of unknown function (DUF3470) C9E88_RS10025 PF00037 4Fe-4S binding domain C9E88_RS10035 PF01596 O-methyltransferase C9E88_RS10040 PF00582 Universal stress protein family C9E88_RS10045 PF14602 Hexapeptide repeat of succinyl-transferase C9E88_RS10045 PF12464 Maltose acetyltransferase C9E88_RS10050 PF01205 Uncharacterized protein family UPF0029 C9E88_RS10060 PF00005 ABC transporter C9E88_RS10060 PF03412 Peptidase C39 family C9E88_RS10060 PF00664 ABC transporter transmembrane region C9E88_RS10065 PF02321 Outer membrane efflux protein C9E88_RS10070 PF00005 ABC transporter C9E88_RS10070 PF12399 Branched-chain amino acid ATP-binding cassette transporter C9E88_RS10075 PF03968 OstA-like protein C9E88_RS10090 PF01380 SIS domain C9E88_RS10090 PF00571 CBS domain C9E88_RS10100 PF01406 tRNA synthetases class I (C) catalytic domain C9E88_RS10100 PF09190 DALR domain C9E88_RS10115 PF00117 Glutamine amidotransferase class-I C9E88_RS10115 PF02540 NAD synthase C9E88_RS10115 PF00958 GMP synthase C terminal domain C9E88_RS10120 PF01810 LysE type translocator C9E88_RS10145 PF02779 Transketolase, pyrimidine binding domain C9E88_RS10145 PF02780 Transketolase, C-terminal domain C9E88_RS10145 PF00456 Transketolase, thiamine diphosphate binding domain C9E88_RS10150 PF02773 S-adenosylmethionine synthetase, C-terminal domain C9E88_RS10150 PF00438 S-adenosylmethionine synthetase, N-terminal domain C9E88_RS10150 PF02772 S-adenosylmethionine synthetase, central domain C9E88_RS10170 PF04143 Sulphur transport C9E88_RS10190 PF03060 Nitronate monooxygenase C9E88_RS10200 PF01207 Dihydrouridine synthase (Dus) C9E88_RS10210 PF00535 Glycosyl transferase family 2 C9E88_RS10215 PF14883 Hypothetical glycosyl hydrolase family 13 C9E88_RS10215 PF01522 Polysaccharide deacetylase C9E88_RS10220 PF07759 Protein of unknown function (DUF1615) C9E88_RS10230 PF00487 Fatty acid desaturase C9E88_RS10235 PF00970 Oxidoreductase FAD-binding domain C9E88_RS10235 PF00111 2Fe-2S iron-sulfur cluster binding domain C9E88_RS10235 PF00175 Oxidoreductase NAD-binding domain C9E88_RS10240 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS10245 PF00072 Response regulator receiver domain C9E88_RS10245 PF00196 Bacterial regulatory proteins, luxR family C9E88_RS10275 PF18337 RapA N-terminal Tudor like domain C9E88_RS10275 PF00176 SNF2 family N-terminal domain C9E88_RS10275 PF00271 Helicase conserved C-terminal domain C9E88_RS10275 PF12137 RNA polymerase recycling family C-terminal C9E88_RS10275 PF18339 RapA N-terminal Tudor like domain 1 C9E88_RS10280 PF00849 RNA pseudouridylate synthase C9E88_RS10290 PF13737 Transposase DDE domain C9E88_RS10295 PF03928 Haem-degrading C9E88_RS10300 PF00202 Aminotransferase class-III C9E88_RS10305 PF02581 Thiamine monophosphate synthase C9E88_RS10335 PF00675 Insulinase (Peptidase family M16) C9E88_RS10335 PF05193 Peptidase M16 inactive domain C9E88_RS10340 PF02567 Phenazine biosynthesis-like protein C9E88_RS10345 PF01613 Flavin reductase like domain C9E88_RS10350 PF01757 Acyltransferase family C9E88_RS10355 PF00753 Metallo-beta-lactamase superfamily C9E88_RS10355 PF16123 Hydroxyacylglutathione hydrolase C-terminus C9E88_RS10415 PF03793 PASTA domain C9E88_RS10415 PF00069 Protein kinase domain C9E88_RS10435 PF01699 Sodium/calcium exchanger protein C9E88_RS10440 PF00814 Glycoprotease family C9E88_RS10445 PF01165 Ribosomal protein S21 C9E88_RS10450 PF09424 Yqey-like protein C9E88_RS10465 PF01435 Peptidase family M48 C9E88_RS10470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_RS10470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_RS10485 PF00156 Phosphoribosyl transferase domain C9E88_RS10495 PF01180 Dihydroorotate dehydrogenase C9E88_RS10515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C9E88_RS10515 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C9E88_RS10520 PF00881 Nitroreductase family C9E88_RS10530 PF00270 DEAD/DEAH box helicase C9E88_RS10530 PF00271 Helicase conserved C-terminal domain C9E88_RS10535 PF00313 'Cold-shock' DNA-binding domain C9E88_RS10545 PF04545 Sigma-70, region 4 C9E88_RS10545 PF04542 Sigma-70 region 2 C9E88_RS10545 PF00140 Sigma-70 factor, region 1.2 C9E88_RS10555 PF04241 Protein of unknown function (DUF423) C9E88_RS10565 PF05690 Thiazole biosynthesis protein ThiG C9E88_RS10575 PF00043 Glutathione S-transferase, C-terminal domain C9E88_RS10575 PF02798 Glutathione S-transferase, N-terminal domain C9E88_RS10580 PF00916 Sulfate permease family C9E88_RS10580 PF01740 STAS domain C9E88_RS10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS10585 PF05231 MASE1 C9E88_RS10585 PF07730 Histidine kinase C9E88_RS10595 PF02390 Putative methyltransferase C9E88_RS10600 PF00171 Aldehyde dehydrogenase family C9E88_RS10605 PF05199 GMC oxidoreductase C9E88_RS10605 PF00732 GMC oxidoreductase C9E88_RS10625 PF00691 OmpA family C9E88_RS10630 PF01979 Amidohydrolase family C9E88_RS10635 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C9E88_RS10635 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C9E88_RS10645 PF02926 THUMP domain C9E88_RS10645 PF01170 Putative RNA methylase family UPF0020 C9E88_RS10645 PF10672 S-adenosylmethionine-dependent methyltransferase C9E88_RS10685 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS10685 PF07724 AAA domain (Cdc48 subfamily) C9E88_RS10685 PF17871 AAA lid domain C9E88_RS10685 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_RS10685 PF02861 Clp amino terminal domain, pathogenicity island component C9E88_RS10690 PF00248 Aldo/keto reductase family C9E88_RS10695 PF00027 Cyclic nucleotide-binding domain C9E88_RS10695 PF13545 Crp-like helix-turn-helix domain C9E88_RS10700 PF02566 OsmC-like protein C9E88_RS10725 PF01867 CRISPR associated protein Cas1 C9E88_RS10810 PF01841 Transglutaminase-like superfamily C9E88_RS10810 PF13559 Domain of unknown function (DUF4129) C9E88_RS10810 PF11992 Domain of unknown function (DUF3488) C9E88_RS10820 PF07726 ATPase family associated with various cellular activities (AAA) C9E88_RS10820 PF17863 AAA lid domain C9E88_RS10825 PF04328 Selenoprotein, putative C9E88_RS10830 PF13722 5TM C-terminal transporter carbon starvation CstA C9E88_RS10830 PF02554 Carbon starvation protein CstA C9E88_RS10835 PF01132 Elongation factor P (EF-P) OB domain C9E88_RS10835 PF08207 Elongation factor P (EF-P) KOW-like domain C9E88_RS10835 PF09285 Elongation factor P, C-terminal C9E88_RS10840 PF04055 Radical SAM superfamily C9E88_RS10855 PF01197 Ribosomal protein L31 C9E88_RS10865 PF13593 SBF-like CPA transporter family (DUF4137) C9E88_RS10870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C9E88_RS10875 PF07690 Major Facilitator Superfamily C9E88_RS10880 PF05362 Lon protease (S16) C-terminal proteolytic domain C9E88_RS10880 PF13654 AAA domain C9E88_RS10885 PF00462 Glutaredoxin C9E88_RS10890 PF00202 Aminotransferase class-III C9E88_RS10895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS10895 PF03466 LysR substrate binding domain C9E88_RS10900 PF01476 LysM domain C9E88_RS10900 PF01551 Peptidase family M23 C9E88_RS10905 PF01975 Survival protein SurE C9E88_RS10920 PF00768 D-alanyl-D-alanine carboxypeptidase C9E88_RS10920 PF07943 Penicillin-binding protein 5, C-terminal domain C9E88_RS10925 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS10935 PF13536 Putative multidrug resistance efflux transporter C9E88_RS10940 PF01381 Helix-turn-helix C9E88_RS10940 PF07883 Cupin domain C9E88_RS10945 PF00293 NUDIX domain C9E88_RS10955 PF04356 Protein of unknown function (DUF489) C9E88_RS10960 PF00206 Lyase C9E88_RS10960 PF08328 Adenylosuccinate lyase C-terminal C9E88_RS10990 PF08496 Peptidase family S49 N-terminal C9E88_RS10990 PF01343 Peptidase family S49 C9E88_RS11010 PF00005 ABC transporter C9E88_RS11015 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS11020 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS11025 PF12849 PBP superfamily domain C9E88_RS11035 PF00282 Pyridoxal-dependent decarboxylase conserved domain C9E88_RS11040 PF00202 Aminotransferase class-III C9E88_RS11050 PF01569 PAP2 superfamily C9E88_RS11055 PF00696 Amino acid kinase family C9E88_RS11055 PF01472 PUA domain C9E88_RS11060 PF01926 50S ribosome-binding GTPase C9E88_RS11060 PF01018 GTP1/OBG C9E88_RS11065 PF07690 Major Facilitator Superfamily C9E88_RS11070 PF01638 HxlR-like helix-turn-helix C9E88_RS11075 PF05368 NmrA-like family C9E88_RS11095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C9E88_RS11095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C9E88_RS11115 PF00271 Helicase conserved C-terminal domain C9E88_RS11115 PF04851 Type III restriction enzyme, res subunit C9E88_RS11115 PF02151 UvrB/uvrC motif C9E88_RS11115 PF12344 Ultra-violet resistance protein B C9E88_RS11115 PF17757 UvrB interaction domain C9E88_RS11125 PF08448 PAS fold C9E88_RS11125 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS11145 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C9E88_RS11155 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS11155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C9E88_RS11160 PF04055 Radical SAM superfamily C9E88_RS11175 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C9E88_RS11175 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C9E88_RS11180 PF00860 Permease family C9E88_RS11185 PF01613 Flavin reductase like domain C9E88_RS11190 PF01042 Endoribonuclease L-PSP C9E88_RS11195 PF00857 Isochorismatase family C9E88_RS11200 PF00296 Luciferase-like monooxygenase C9E88_RS11205 PF12697 Alpha/beta hydrolase family C9E88_RS11215 PF13180 PDZ domain C9E88_RS11215 PF17820 PDZ domain C9E88_RS11220 PF01784 NIF3 (NGG1p interacting factor 3) C9E88_RS11225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C9E88_RS11225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C9E88_RS11270 PF01494 FAD binding domain C9E88_RS11275 PF03466 LysR substrate binding domain C9E88_RS11275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS11285 PF01040 UbiA prenyltransferase family C9E88_RS11290 PF04345 Chorismate lyase C9E88_RS11305 PF00120 Glutamine synthetase, catalytic domain C9E88_RS11305 PF03951 Glutamine synthetase, beta-Grasp domain C9E88_RS11310 PF13439 Glycosyltransferase Family 4 C9E88_RS11310 PF00534 Glycosyl transferases group 1 C9E88_RS11315 PF05159 Capsule polysaccharide biosynthesis protein C9E88_RS11320 PF13439 Glycosyltransferase Family 4 C9E88_RS11320 PF00534 Glycosyl transferases group 1 C9E88_RS11325 PF02563 Polysaccharide biosynthesis/export protein C9E88_RS11340 PF00534 Glycosyl transferases group 1 C9E88_RS11340 PF13439 Glycosyltransferase Family 4 C9E88_RS11345 PF00005 ABC transporter C9E88_RS11350 PF01061 ABC-2 type transporter C9E88_RS11360 PF01050 Mannose-6-phosphate isomerase C9E88_RS11360 PF00483 Nucleotidyl transferase C9E88_RS11365 PF05159 Capsule polysaccharide biosynthesis protein C9E88_RS11370 PF00117 Glutamine amidotransferase class-I C9E88_RS11375 PF00591 Glycosyl transferase family, a/b domain C9E88_RS11375 PF02885 Glycosyl transferase family, helical bundle domain C9E88_RS11380 PF00218 Indole-3-glycerol phosphate synthase C9E88_RS11385 PF01593 Flavin containing amine oxidoreductase C9E88_RS11395 PF01227 GTP cyclohydrolase I C9E88_RS11405 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS11420 PF05675 Protein of unknown function (DUF817) C9E88_RS11425 PF01208 Uroporphyrinogen decarboxylase (URO-D) C9E88_RS11435 PF02678 Pirin C9E88_RS11435 PF17954 Quercetinase C-terminal cupin domain C9E88_RS11500 PF02384 N-6 DNA Methylase C9E88_RS11510 PF02661 Fic/DOC family C9E88_RS11560 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS11560 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_RS11570 PF00764 Arginosuccinate synthase C9E88_RS11575 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS11575 PF08448 PAS fold C9E88_RS11580 PF01979 Amidohydrolase family C9E88_RS11585 PF00929 Exonuclease C9E88_RS11610 PF00324 Amino acid permease C9E88_RS11620 PF00324 Amino acid permease C9E88_RS11650 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS11650 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_RS11655 PF00005 ABC transporter C9E88_RS11655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C9E88_RS11660 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS11660 PF12911 N-terminal TM domain of oligopeptide transport permease C C9E88_RS11665 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS11670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C9E88_RS11675 PF01464 Transglycosylase SLT domain C9E88_RS11675 PF01476 LysM domain C9E88_RS11680 PF00929 Exonuclease C9E88_RS11690 PF09297 NADH pyrophosphatase zinc ribbon domain C9E88_RS11690 PF00293 NUDIX domain C9E88_RS11700 PF07859 alpha/beta hydrolase fold C9E88_RS11710 PF02021 Uncharacterised protein family UPF0102 C9E88_RS11720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C9E88_RS11730 PF01494 FAD binding domain C9E88_RS11735 PF01494 FAD binding domain C9E88_RS11740 PF00561 alpha/beta hydrolase fold C9E88_RS11750 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS11755 PF09278 MerR, DNA binding C9E88_RS11755 PF00376 MerR family regulatory protein C9E88_RS11765 PF00557 Metallopeptidase family M24 C9E88_RS11765 PF05195 Aminopeptidase P, N-terminal domain C9E88_RS11770 PF03695 Uncharacterised protein family (UPF0149) C9E88_RS11795 PF18381 YcaO cyclodehydratase C-terminal domain C9E88_RS11795 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding C9E88_RS11810 PF01812 5-formyltetrahydrofolate cyclo-ligase family C9E88_RS11815 PF02190 ATP-dependent protease La (LON) substrate-binding domain C9E88_RS11815 PF05362 Lon protease (S16) C-terminal proteolytic domain C9E88_RS11815 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS11820 PF04389 Peptidase family M28 C9E88_RS11825 PF02590 Predicted SPOUT methyltransferase C9E88_RS11830 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C9E88_RS11840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C9E88_RS11840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C9E88_RS11845 PF04060 Putative Fe-S cluster C9E88_RS11850 PF00730 HhH-GPD superfamily base excision DNA repair protein C9E88_RS11850 PF00633 Helix-hairpin-helix motif C9E88_RS11850 PF10576 Iron-sulfur binding domain of endonuclease III C9E88_RS11860 PF05191 Adenylate kinase, active site lid C9E88_RS11875 PF03717 Penicillin-binding Protein dimerisation domain C9E88_RS11875 PF00905 Penicillin binding protein transpeptidase domain C9E88_RS11900 PF01553 Acyltransferase C9E88_RS11905 PF17185 NlpE C-terminal OB domain C9E88_RS11905 PF04170 NlpE N-terminal domain C9E88_RS11910 PF00593 TonB dependent receptor C9E88_RS11910 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS11920 PF00196 Bacterial regulatory proteins, luxR family C9E88_RS11940 PF00118 TCP-1/cpn60 chaperonin family C9E88_RS11945 PF00166 Chaperonin 10 Kd subunit C9E88_RS11950 PF00149 Calcineurin-like phosphoesterase C9E88_RS11955 PF00781 Diacylglycerol kinase catalytic domain C9E88_RS11960 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain C9E88_RS11960 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain C9E88_RS11970 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C9E88_RS11970 PF01266 FAD dependent oxidoreductase C9E88_RS11975 PF00083 Sugar (and other) transporter C9E88_RS11990 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C9E88_RS11990 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C9E88_RS12010 PF08240 Alcohol dehydrogenase GroES-like domain C9E88_RS12010 PF00107 Zinc-binding dehydrogenase C9E88_RS12030 PF03551 Transcriptional regulator PadR-like family C9E88_RS12050 PF00009 Elongation factor Tu GTP binding domain C9E88_RS12055 PF01507 Phosphoadenosine phosphosulfate reductase family C9E88_RS12070 PF15975 Flotillin C9E88_RS12070 PF01145 SPFH domain / Band 7 family C9E88_RS12075 PF00549 CoA-ligase C9E88_RS12075 PF02629 CoA binding domain C9E88_RS12080 PF08442 ATP-grasp domain C9E88_RS12080 PF00549 CoA-ligase C9E88_RS12085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C9E88_RS12085 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS12090 PF00364 Biotin-requiring enzyme C9E88_RS12090 PF02817 e3 binding domain C9E88_RS12090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C9E88_RS12095 PF02779 Transketolase, pyrimidine binding domain C9E88_RS12095 PF16870 2-oxoglutarate dehydrogenase C-terminal C9E88_RS12095 PF00676 Dehydrogenase E1 component C9E88_RS12095 PF16078 2-oxoglutarate dehydrogenase N-terminus C9E88_RS12100 PF13085 2Fe-2S iron-sulfur cluster binding domain C9E88_RS12105 PF02910 Fumarate reductase flavoprotein C-term C9E88_RS12105 PF00890 FAD binding domain C9E88_RS12110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C9E88_RS12115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C9E88_RS12120 PF00285 Citrate synthase, C-terminal domain C9E88_RS12125 PF00743 Flavin-binding monooxygenase-like C9E88_RS12140 PF05762 VWA domain containing CoxE-like protein C9E88_RS12145 PF07728 AAA domain (dynein-related subfamily) C9E88_RS12145 PF17868 AAA lid domain C9E88_RS12145 PF12592 Protein of unknown function (DUF3763) C9E88_RS12150 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) C9E88_RS12150 PF13296 Putative type VI secretion system Rhs element Vgr C9E88_RS12150 PF04717 Type VI secretion system, phage-baseplate injector C9E88_RS12155 PF02540 NAD synthase C9E88_RS12155 PF00795 Carbon-nitrogen hydrolase C9E88_RS12170 PF00582 Universal stress protein family C9E88_RS12205 PF00999 Sodium/hydrogen exchanger family C9E88_RS12215 PF04228 Putative neutral zinc metallopeptidase C9E88_RS12220 PF05661 Protein of unknown function (DUF808) C9E88_RS12225 PF00579 tRNA synthetases class I (W and Y) C9E88_RS12235 PF00152 tRNA synthetases class II (D, K and N) C9E88_RS12235 PF01336 OB-fold nucleic acid binding domain C9E88_RS12245 PF00156 Phosphoribosyl transferase domain C9E88_RS12250 PF00301 Rubredoxin C9E88_RS12255 PF18113 Rubredoxin binding C-terminal domain C9E88_RS12255 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS12260 PF12697 Alpha/beta hydrolase family C9E88_RS12265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS12265 PF03466 LysR substrate binding domain C9E88_RS12270 PF00072 Response regulator receiver domain C9E88_RS12270 PF00196 Bacterial regulatory proteins, luxR family C9E88_RS12275 PF13090 Polyphosphate kinase C-terminal domain 2 C9E88_RS12275 PF17941 Polyphosphate kinase C-terminal domain 1 C9E88_RS12275 PF13089 Polyphosphate kinase N-terminal domain C9E88_RS12275 PF02503 Polyphosphate kinase middle domain C9E88_RS12280 PF00912 Transglycosylase C9E88_RS12285 PF01694 Rhomboid family C9E88_RS12295 PF00005 ABC transporter C9E88_RS12300 PF13472 GDSL-like Lipase/Acylhydrolase family C9E88_RS12305 PF00484 Carbonic anhydrase C9E88_RS12310 PF00561 alpha/beta hydrolase fold C9E88_RS12320 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS12320 PF00593 TonB dependent receptor C9E88_RS12325 PF01106 NifU-like domain C9E88_RS12325 PF01521 Iron-sulphur cluster biosynthesis C9E88_RS12350 PF01384 Phosphate transporter family C9E88_RS12355 PF02574 Homocysteine S-methyltransferase C9E88_RS12355 PF02965 Vitamin B12 dependent methionine synthase, activation domain C9E88_RS12355 PF02607 B12 binding domain C9E88_RS12355 PF02310 B12 binding domain C9E88_RS12355 PF00809 Pterin binding enzyme C9E88_RS12370 PF04480 Protein of unknown function (DUF559) C9E88_RS12375 PF17151 Periplasmic sensor domain C9E88_RS12375 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS12380 PF02733 Dak1 domain C9E88_RS12385 PF13361 UvrD-like helicase C-terminal domain C9E88_RS12385 PF00580 UvrD/REP helicase N-terminal domain C9E88_RS12395 PF07690 Major Facilitator Superfamily C9E88_RS12405 PF01327 Polypeptide deformylase C9E88_RS12425 PF00083 Sugar (and other) transporter C9E88_RS12425 PF08946 Osmosensory transporter coiled coil C9E88_RS12460 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS12465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_RS12470 PF02308 MgtC family C9E88_RS12475 PF07152 YaeQ protein C9E88_RS12480 PF07683 Cobalamin synthesis protein cobW C-terminal domain C9E88_RS12480 PF02492 CobW/HypB/UreG, nucleotide-binding domain C9E88_RS12490 PF01494 FAD binding domain C9E88_RS12495 PF03466 LysR substrate binding domain C9E88_RS12495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS12500 PF07690 Major Facilitator Superfamily C9E88_RS12505 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS12505 PF16859 Tetracyclin repressor-like, C-terminal domain C9E88_RS12510 PF03061 Thioesterase superfamily C9E88_RS12520 PF01734 Patatin-like phospholipase C9E88_RS12525 PF01235 Sodium:alanine symporter family C9E88_RS12530 PF03616 Sodium/glutamate symporter C9E88_RS12540 PF00881 Nitroreductase family C9E88_RS12545 PF07690 Major Facilitator Superfamily C9E88_RS12550 PF12805 FUSC-like inner membrane protein yccS C9E88_RS12560 PF00667 FAD binding domain C9E88_RS12560 PF00258 Flavodoxin C9E88_RS12560 PF00175 Oxidoreductase NAD-binding domain C9E88_RS12620 PF04304 Protein of unknown function (DUF454) C9E88_RS12630 PF08085 Entericidin EcnA/B family C9E88_RS12635 PF01546 Peptidase family M20/M25/M40 C9E88_RS12635 PF07687 Peptidase dimerisation domain C9E88_RS12645 PF01584 CheW-like domain C9E88_RS12645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS12645 PF01627 Hpt domain C9E88_RS12645 PF00072 Response regulator receiver domain C9E88_RS12650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C9E88_RS12650 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C9E88_RS12655 PF01584 CheW-like domain C9E88_RS12660 PF00072 Response regulator receiver domain C9E88_RS12665 PF00072 Response regulator receiver domain C9E88_RS12675 PF13533 Biotin-lipoyl like C9E88_RS12680 PF00873 AcrB/AcrD/AcrF family C9E88_RS12685 PF03129 Anticodon binding domain C9E88_RS12685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C9E88_RS12685 PF04073 Aminoacyl-tRNA editing domain C9E88_RS12710 PF00692 dUTPase C9E88_RS12720 PF10609 NUBPL iron-transfer P-loop NTPase C9E88_RS12735 PF00970 Oxidoreductase FAD-binding domain C9E88_RS12735 PF00175 Oxidoreductase NAD-binding domain C9E88_RS12740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS12740 PF03466 LysR substrate binding domain C9E88_RS12745 PF00691 OmpA family C9E88_RS12745 PF13488 Glycine zipper C9E88_RS12750 PF01553 Acyltransferase C9E88_RS12760 PF03775 Septum formation inhibitor MinC, C-terminal domain C9E88_RS12765 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C9E88_RS12770 PF03776 Septum formation topological specificity factor MinE C9E88_RS12785 PF03895 YadA-like membrane anchor domain C9E88_RS12785 PF13018 Extended Signal Peptide of Type V secretion system C9E88_RS12785 PF05662 Coiled stalk of trimeric autotransporter adhesin C9E88_RS12785 PF05658 Head domain of trimeric autotransporter adhesin C9E88_RS12805 PF01580 FtsK/SpoIIIE family C9E88_RS12805 PF09397 Ftsk gamma domain C9E88_RS12805 PF17854 FtsK alpha domain C9E88_RS12805 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C9E88_RS12810 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS12815 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C9E88_RS12820 PF04376 Arginine-tRNA-protein transferase, N terminus C9E88_RS12820 PF04377 Arginine-tRNA-protein transferase, C terminus C9E88_RS12825 PF00583 Acetyltransferase (GNAT) family C9E88_RS12835 PF03144 Elongation factor Tu domain 2 C9E88_RS12835 PF03143 Elongation factor Tu C-terminal domain C9E88_RS12835 PF00009 Elongation factor Tu GTP binding domain C9E88_RS12840 PF03144 Elongation factor Tu domain 2 C9E88_RS12840 PF14492 Elongation Factor G, domain II C9E88_RS12840 PF00679 Elongation factor G C-terminus C9E88_RS12840 PF03764 Elongation factor G, domain IV C9E88_RS12840 PF00009 Elongation factor Tu GTP binding domain C9E88_RS12845 PF00177 Ribosomal protein S7p/S5e C9E88_RS12850 PF00164 Ribosomal protein S12/S23 C9E88_RS12860 PF02801 Beta-ketoacyl synthase, C-terminal domain C9E88_RS12860 PF00109 Beta-ketoacyl synthase, N-terminal domain C9E88_RS12865 PF03653 Uncharacterised protein family (UPF0093) C9E88_RS12870 PF04972 BON domain C9E88_RS12870 PF01476 LysM domain C9E88_RS12875 PF00550 Phosphopantetheine attachment site C9E88_RS12885 PF00698 Acyl transferase domain C9E88_RS12890 PF01783 Ribosomal L32p protein family C9E88_RS12895 PF02620 Large ribosomal RNA subunit accumulation protein YceD C9E88_RS12900 PF04315 Elongation factor P hydroxylase C9E88_RS12905 PF01300 Telomere recombination C9E88_RS12915 PF02616 Segregation and condensation protein ScpA C9E88_RS12920 PF04079 Segregation and condensation complex subunit ScpB C9E88_RS12925 PF01479 S4 domain C9E88_RS12925 PF00849 RNA pseudouridylate synthase C9E88_RS12945 PF00155 Aminotransferase class I and II C9E88_RS12950 PF04055 Radical SAM superfamily C9E88_RS12950 PF00202 Aminotransferase class-III C9E88_RS12950 PF06968 Biotin and Thiamin Synthesis associated domain C9E88_RS12955 PF12697 Alpha/beta hydrolase family C9E88_RS12965 PF00578 AhpC/TSA family C9E88_RS12970 PF00210 Ferritin-like domain C9E88_RS12975 PF05971 RNA methyltransferase C9E88_RS12990 PF16363 GDP-mannose 4,6 dehydratase C9E88_RS12995 PF12826 Helix-hairpin-helix motif C9E88_RS12995 PF01653 NAD-dependent DNA ligase adenylation domain C9E88_RS12995 PF00533 BRCA1 C Terminus (BRCT) domain C9E88_RS12995 PF03120 NAD-dependent DNA ligase OB-fold domain C9E88_RS12995 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C9E88_RS13005 PF02463 RecF/RecN/SMC N terminal domain C9E88_RS13015 PF01925 Sulfite exporter TauE/SafE C9E88_RS13025 PF03309 Type III pantothenate kinase C9E88_RS13035 PF00448 SRP54-type protein, GTPase domain C9E88_RS13035 PF02978 Signal peptide binding domain C9E88_RS13035 PF02881 SRP54-type protein, helical bundle domain C9E88_RS13045 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS13045 PF00114 Pilin (bacterial filament) C9E88_RS13070 PF01207 Dihydrouridine synthase (Dus) C9E88_RS13080 PF08378 Nuclease-related domain C9E88_RS13085 PF00893 Small Multidrug Resistance protein C9E88_RS13090 PF00893 Small Multidrug Resistance protein C9E88_RS13105 PF07732 Multicopper oxidase C9E88_RS13105 PF07731 Multicopper oxidase C9E88_RS13105 PF00394 Multicopper oxidase C9E88_RS13115 PF00834 Ribulose-phosphate 3 epimerase family C9E88_RS13125 PF00756 Putative esterase C9E88_RS13135 PF04445 Putative SAM-dependent methyltransferase C9E88_RS13140 PF02673 Bacitracin resistance protein BacA C9E88_RS13145 PF00814 Glycoprotease family C9E88_RS13150 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS13155 PF00293 NUDIX domain C9E88_RS13195 PF04715 Anthranilate synthase component I, N terminal region C9E88_RS13195 PF00425 chorismate binding enzyme C9E88_RS13200 PF00155 Aminotransferase class I and II C9E88_RS13205 PF00815 Histidinol dehydrogenase C9E88_RS13210 PF01634 ATP phosphoribosyltransferase C9E88_RS13215 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C9E88_RS13220 PF01722 BolA-like protein C9E88_RS13225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C9E88_RS13230 PF04963 Sigma-54 factor, core binding domain C9E88_RS13230 PF00309 Sigma-54 factor, Activator interacting domain (AID) C9E88_RS13230 PF04552 Sigma-54, DNA binding domain C9E88_RS13275 PF00795 Carbon-nitrogen hydrolase C9E88_RS13285 PF02566 OsmC-like protein C9E88_RS13295 PF00437 Type II/IV secretion system protein C9E88_RS13315 PF00476 DNA polymerase family A C9E88_RS13315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C9E88_RS13315 PF01367 5'-3' exonuclease, C-terminal SAM fold C9E88_RS13315 PF01612 3'-5' exonuclease C9E88_RS13320 PF02325 YGGT family C9E88_RS13325 PF14748 Pyrroline-5-carboxylate reductase dimerisation C9E88_RS13325 PF03807 NADP oxidoreductase coenzyme F420-dependent C9E88_RS13330 PF09179 TilS substrate binding domain C9E88_RS13330 PF01171 PP-loop family C9E88_RS13330 PF11734 TilS substrate C-terminal domain C9E88_RS13335 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C9E88_RS13340 PF02541 Ppx/GppA phosphatase family C9E88_RS13345 PF00085 Thioredoxin C9E88_RS13350 PF07497 Rho termination factor, RNA-binding domain C9E88_RS13350 PF07498 Rho termination factor, N-terminal domain C9E88_RS13350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C9E88_RS13360 PF00216 Bacterial DNA-binding protein C9E88_RS13365 PF03483 B3/4 domain C9E88_RS13365 PF01588 Putative tRNA binding domain C9E88_RS13365 PF03147 Ferredoxin-fold anticodon binding domain C9E88_RS13365 PF03484 tRNA synthetase B5 domain C9E88_RS13365 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C9E88_RS13370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C9E88_RS13370 PF01409 tRNA synthetases class II core domain (F) C9E88_RS13405 PF00453 Ribosomal protein L20 C9E88_RS13410 PF01632 Ribosomal protein L35 C9E88_RS13415 PF07690 Major Facilitator Superfamily C9E88_RS13425 PF09335 SNARE associated Golgi protein C9E88_RS13435 PF02798 Glutathione S-transferase, N-terminal domain C9E88_RS13435 PF00043 Glutathione S-transferase, C-terminal domain C9E88_RS13440 PF00707 Translation initiation factor IF-3, C-terminal domain C9E88_RS13440 PF05198 Translation initiation factor IF-3, N-terminal domain C9E88_RS13445 PF03129 Anticodon binding domain C9E88_RS13445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C9E88_RS13445 PF02824 TGS domain C9E88_RS13445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C9E88_RS13470 PF04030 D-arabinono-1,4-lactone oxidase C9E88_RS13470 PF01565 FAD binding domain C9E88_RS13475 PF00501 AMP-binding enzyme C9E88_RS13475 PF13193 AMP-binding enzyme C-terminal domain C9E88_RS13480 PF04751 Protein of unknown function (DUF615) C9E88_RS13485 PF00381 PTS HPr component phosphorylation site C9E88_RS13490 PF03668 P-loop ATPase protein family C9E88_RS13495 PF02569 Pantoate-beta-alanine ligase C9E88_RS13500 PF02548 Ketopantoate hydroxymethyltransferase C9E88_RS13505 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C9E88_RS13510 PF12627 Probable RNA and SrmB- binding site of polymerase A C9E88_RS13510 PF01743 Poly A polymerase head domain C9E88_RS13510 PF12626 Polymerase A arginine-rich C-terminus C9E88_RS13515 PF10531 SLBB domain C9E88_RS13520 PF03819 MazG nucleotide pyrophosphohydrolase domain C9E88_RS13525 PF00106 short chain dehydrogenase C9E88_RS13535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C9E88_RS13535 PF01926 50S ribosome-binding GTPase C9E88_RS13540 PF13360 PQQ-like domain C9E88_RS13550 PF03129 Anticodon binding domain C9E88_RS13550 PF13393 Histidyl-tRNA synthetase C9E88_RS13555 PF04551 GcpE protein C9E88_RS13560 PF13464 Domain of unknown function (DUF4115) C9E88_RS13570 PF04055 Radical SAM superfamily C9E88_RS13575 PF00334 Nucleoside diphosphate kinase C9E88_RS13580 PF04384 Iron-sulphur cluster assembly C9E88_RS13585 PF01569 PAP2 superfamily C9E88_RS13590 PF13439 Glycosyltransferase Family 4 C9E88_RS13590 PF00534 Glycosyl transferases group 1 C9E88_RS13595 PF07730 Histidine kinase C9E88_RS13595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS13595 PF13492 GAF domain C9E88_RS13620 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C9E88_RS13620 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C9E88_RS13625 PF10369 Small subunit of acetolactate synthase C9E88_RS13630 PF00205 Thiamine pyrophosphate enzyme, central domain C9E88_RS13630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C9E88_RS13630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C9E88_RS13640 PF09334 tRNA synthetases class I (M) C9E88_RS13640 PF13603 Leucyl-tRNA synthetase, Domain 2 C9E88_RS13640 PF00133 tRNA synthetases class I (I, L, M and V) C9E88_RS13640 PF08264 Anticodon-binding domain of tRNA C9E88_RS13655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_RS13660 PF12704 MacB-like periplasmic core domain C9E88_RS13660 PF00005 ABC transporter C9E88_RS13660 PF02687 FtsX-like permease family C9E88_RS13665 PF08139 Prokaryotic membrane lipoprotein lipid attachment site C9E88_RS13665 PF02321 Outer membrane efflux protein C9E88_RS13695 PF13296 Putative type VI secretion system Rhs element Vgr C9E88_RS13695 PF04717 Type VI secretion system, phage-baseplate injector C9E88_RS13695 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) C9E88_RS13695 PF13296 Putative type VI secretion system Rhs element Vgr C9E88_RS13695 PF04717 Type VI secretion system, phage-baseplate injector C9E88_RS13695 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) C9E88_RS13700 PF00899 ThiF family C9E88_RS13710 PF00929 Exonuclease C9E88_RS13715 PF03193 RsgA GTPase C9E88_RS13725 PF00462 Glutaredoxin C9E88_RS13730 PF02556 Preprotein translocase subunit SecB C9E88_RS13740 PF01026 TatD related DNase C9E88_RS13755 PF03144 Elongation factor Tu domain 2 C9E88_RS13755 PF16658 Class II release factor RF3, C-terminal domain C9E88_RS13755 PF00009 Elongation factor Tu GTP binding domain C9E88_RS13760 PF07729 FCD domain C9E88_RS13760 PF00392 Bacterial regulatory proteins, gntR family C9E88_RS13765 PF00289 Biotin carboxylase, N-terminal domain C9E88_RS13765 PF00364 Biotin-requiring enzyme C9E88_RS13765 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_RS13765 PF02785 Biotin carboxylase C-terminal domain C9E88_RS13770 PF01425 Amidase C9E88_RS13775 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS13775 PF03707 Bacterial signalling protein N terminal repeat C9E88_RS13775 PF00563 EAL domain C9E88_RS13780 PF03572 Peptidase family S41 C9E88_RS13780 PF17804 Tail specific protease N-terminal domain C9E88_RS13780 PF00595 PDZ domain C9E88_RS13780 PF11818 C-terminal domain of tail specific protease (DUF3340) C9E88_RS13785 PF00933 Glycosyl hydrolase family 3 N terminal domain C9E88_RS13800 PF00171 Aldehyde dehydrogenase family C9E88_RS13805 PF00871 Acetokinase family C9E88_RS13810 PF07085 DRTGG domain C9E88_RS13810 PF01515 Phosphate acetyl/butaryl transferase C9E88_RS13835 PF05683 Fumarase C-terminus C9E88_RS13835 PF05681 Fumarate hydratase (Fumerase) C9E88_RS13850 PF07724 AAA domain (Cdc48 subfamily) C9E88_RS13850 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_RS13850 PF06689 ClpX C4-type zinc finger C9E88_RS13855 PF00574 Clp protease C9E88_RS13860 PF05697 Bacterial trigger factor protein (TF) C9E88_RS13860 PF05698 Bacterial trigger factor protein (TF) C-terminus C9E88_RS13860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_RS13865 PF00593 TonB dependent receptor C9E88_RS13865 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS13870 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS13870 PF00593 TonB dependent receptor C9E88_RS13875 PF00593 TonB dependent receptor C9E88_RS13875 PF07715 TonB-dependent Receptor Plug Domain C9E88_RS13880 PF18331 PKHD-type hydroxylase C-terminal domain C9E88_RS13880 PF13640 2OG-Fe(II) oxygenase superfamily C9E88_RS13885 PF01070 FMN-dependent dehydrogenase C9E88_RS13890 PF08502 LeuA allosteric (dimerisation) domain C9E88_RS13890 PF00682 HMGL-like C9E88_RS13895 PF00561 alpha/beta hydrolase fold C9E88_RS13900 PF00561 alpha/beta hydrolase fold C9E88_RS13900 PF07021 Methionine biosynthesis protein MetW C9E88_RS13915 PF01725 Ham1 family C9E88_RS13925 PF02416 mttA/Hcf106 family C9E88_RS13930 PF02416 mttA/Hcf106 family C9E88_RS13935 PF00902 Sec-independent protein translocase protein (TatC) C9E88_RS13950 PF01790 Prolipoprotein diacylglyceryl transferase C9E88_RS13975 PF00303 Thymidylate synthase C9E88_RS13980 PF00186 Dihydrofolate reductase C9E88_RS13995 PF01625 Peptide methionine sulfoxide reductase C9E88_RS14005 PF01618 MotA/TolQ/ExbB proton channel family C9E88_RS14015 PF00551 Formyl transferase C9E88_RS14015 PF01842 ACT domain C9E88_RS14025 PF00171 Aldehyde dehydrogenase family C9E88_RS14030 PF00830 Ribosomal L28 family C9E88_RS14035 PF00471 Ribosomal protein L33 C9E88_RS14040 PF02254 TrkA-N domain C9E88_RS14040 PF00999 Sodium/hydrogen exchanger family C9E88_RS14065 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C9E88_RS14070 PF00580 UvrD/REP helicase N-terminal domain C9E88_RS14070 PF13361 UvrD-like helicase C-terminal domain C9E88_RS14080 PF13737 Transposase DDE domain C9E88_RS14085 PF02595 Glycerate kinase family C9E88_RS14110 PF01396 Topoisomerase DNA binding C4 zinc finger C9E88_RS14110 PF01751 Toprim domain C9E88_RS14110 PF08272 Topoisomerase I zinc-ribbon-like C9E88_RS14110 PF01131 DNA topoisomerase C9E88_RS14125 PF04102 SlyX C9E88_RS14130 PF00005 ABC transporter C9E88_RS14130 PF16326 ABC transporter C-terminal domain C9E88_RS14130 PF12848 ABC transporter C9E88_RS14145 PF03279 Bacterial lipid A biosynthesis acyltransferase C9E88_RS14165 PF01118 Semialdehyde dehydrogenase, NAD binding domain C9E88_RS14165 PF02774 Semialdehyde dehydrogenase, dimerisation domain C9E88_RS14185 PF01416 tRNA pseudouridine synthase C9E88_RS14195 PF01176 Translation initiation factor 1A / IF-1 C9E88_RS14210 PF00180 Isocitrate/isopropylmalate dehydrogenase C9E88_RS14220 PF00694 Aconitase C-terminal domain C9E88_RS14225 PF00330 Aconitase family (aconitate hydratase) C9E88_RS14235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS14235 PF03466 LysR substrate binding domain C9E88_RS14260 PF00293 NUDIX domain C9E88_RS14265 PF05524 PEP-utilising enzyme, N-terminal C9E88_RS14265 PF01590 GAF domain C9E88_RS14265 PF02896 PEP-utilising enzyme, TIM barrel domain C9E88_RS14265 PF00391 PEP-utilising enzyme, mobile domain C9E88_RS14275 PF12833 Helix-turn-helix domain C9E88_RS14275 PF01965 DJ-1/PfpI family C9E88_RS14290 PF01037 Lrp/AsnC ligand binding domain C9E88_RS14295 PF18158 Adaptive response protein AidB N-terminal domain C9E88_RS14295 PF02770 Acyl-CoA dehydrogenase, middle domain C9E88_RS14295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS14310 PF00141 Peroxidase C9E88_RS14325 PF12706 Beta-lactamase superfamily domain C9E88_RS14335 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS14335 PF14759 Reductase C-terminal C9E88_RS14340 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C9E88_RS14345 PF00106 short chain dehydrogenase C9E88_RS14350 PF00355 Rieske [2Fe-2S] domain C9E88_RS14355 PF00866 Ring hydroxylating beta subunit C9E88_RS14360 PF00848 Ring hydroxylating alpha subunit (catalytic domain) C9E88_RS14360 PF00355 Rieske [2Fe-2S] domain C9E88_RS14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS14365 PF03466 LysR substrate binding domain C9E88_RS14370 PF00561 alpha/beta hydrolase fold C9E88_RS14375 PF03573 outer membrane porin, OprD family C9E88_RS14380 PF07836 DmpG-like communication domain C9E88_RS14380 PF00682 HMGL-like C9E88_RS14385 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation C9E88_RS14385 PF01118 Semialdehyde dehydrogenase, NAD binding domain C9E88_RS14390 PF01557 Fumarylacetoacetate (FAA) hydrolase family C9E88_RS14400 PF01479 S4 domain C9E88_RS14400 PF00849 RNA pseudouridylate synthase C9E88_RS14405 PF12111 Polyribonucleotide phosphorylase C terminal C9E88_RS14405 PF00575 S1 RNA binding domain C9E88_RS14405 PF10150 Ribonuclease E/G family C9E88_RS14410 PF00501 AMP-binding enzyme C9E88_RS14410 PF13193 AMP-binding enzyme C-terminal domain C9E88_RS14440 PF04024 PspC domain C9E88_RS14445 PF12627 Probable RNA and SrmB- binding site of polymerase A C9E88_RS14445 PF02272 DHHA1 domain C9E88_RS14445 PF01368 DHH family C9E88_RS14445 PF00571 CBS domain C9E88_RS14445 PF01743 Poly A polymerase head domain C9E88_RS14465 PF02091 Glycyl-tRNA synthetase alpha subunit C9E88_RS14470 PF02092 Glycyl-tRNA synthetase beta subunit C9E88_RS14470 PF05746 DALR anticodon binding domain C9E88_RS14505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_RS14505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_RS14530 PF07992 Pyridine nucleotide-disulphide oxidoreductase C9E88_RS14530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C9E88_RS14540 PF03884 DNA gyrase inhibitor YacG C9E88_RS14545 PF00753 Metallo-beta-lactamase superfamily C9E88_RS14550 PF00762 Ferrochelatase C9E88_RS14560 PF01177 Asp/Glu/Hydantoin racemase C9E88_RS14590 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) C9E88_RS14590 PF04717 Type VI secretion system, phage-baseplate injector C9E88_RS14590 PF13296 Putative type VI secretion system Rhs element Vgr C9E88_RS14595 PF01206 Sulfurtransferase TusA C9E88_RS14600 PF03471 Transporter associated domain C9E88_RS14600 PF00571 CBS domain C9E88_RS14605 PF00795 Carbon-nitrogen hydrolase C9E88_RS14610 PF01588 Putative tRNA binding domain C9E88_RS14610 PF08264 Anticodon-binding domain of tRNA C9E88_RS14610 PF09334 tRNA synthetases class I (M) C9E88_RS14620 PF13737 Transposase DDE domain C9E88_RS14625 PF07963 Prokaryotic N-terminal methylation motif C9E88_RS14625 PF08334 Type II secretion system (T2SS), protein G C9E88_RS14630 PF00482 Type II secretion system (T2SS), protein F C9E88_RS14635 PF18074 Primosomal protein N C-terminal domain C9E88_RS14635 PF00270 DEAD/DEAH box helicase C9E88_RS14635 PF00271 Helicase conserved C-terminal domain C9E88_RS14635 PF17764 3′ DNA-binding domain (3′BD) C9E88_RS14635 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C9E88_RS14640 PF00999 Sodium/hydrogen exchanger family C9E88_RS14640 PF02254 TrkA-N domain C9E88_RS14645 PF01430 Hsp33 protein C9E88_RS14665 PF01556 DnaJ C terminal domain C9E88_RS14665 PF00226 DnaJ domain C9E88_RS14675 PF04325 Protein of unknown function (DUF465) C9E88_RS14685 PF01544 CorA-like Mg2+ transporter protein C9E88_RS14690 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C9E88_RS14690 PF00013 KH domain C9E88_RS14690 PF03725 3' exoribonuclease family, domain 2 C9E88_RS14690 PF00575 S1 RNA binding domain C9E88_RS14690 PF01138 3' exoribonuclease family, domain 1 C9E88_RS14695 PF00312 Ribosomal protein S15 C9E88_RS14700 PF13538 UvrD-like helicase C-terminal domain C9E88_RS14705 PF13361 UvrD-like helicase C-terminal domain C9E88_RS14705 PF00580 UvrD/REP helicase N-terminal domain C9E88_RS14705 PF12705 PD-(D/E)XK nuclease superfamily C9E88_RS14710 PF17946 RecC C-terminal domain C9E88_RS14720 PF03976 Polyphosphate kinase 2 (PPK2) C9E88_RS14730 PF01209 ubiE/COQ5 methyltransferase family C9E88_RS14740 PF03109 ABC1 family C9E88_RS14765 PF17674 HHH domain C9E88_RS14765 PF00575 S1 RNA binding domain C9E88_RS14765 PF09371 Tex-like protein N-terminal domain C9E88_RS14765 PF16921 Tex protein YqgF-like domain C9E88_RS14770 PF00072 Response regulator receiver domain C9E88_RS14770 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS14775 PF00672 HAMP domain C9E88_RS14775 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS14775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS14780 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain C9E88_RS14780 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain C9E88_RS14790 PF01323 DSBA-like thioredoxin domain C9E88_RS14815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS14815 PF00183 Hsp90 protein C9E88_RS14825 PF03922 OmpW family C9E88_RS14830 PF03553 Na+/H+ antiporter family C9E88_RS14830 PF13726 Na+-H+ antiporter family C9E88_RS14835 PF00561 alpha/beta hydrolase fold C9E88_RS14855 PF05000 RNA polymerase Rpb1, domain 4 C9E88_RS14855 PF04983 RNA polymerase Rpb1, domain 3 C9E88_RS14855 PF00623 RNA polymerase Rpb1, domain 2 C9E88_RS14855 PF04997 RNA polymerase Rpb1, domain 1 C9E88_RS14855 PF04998 RNA polymerase Rpb1, domain 5 C9E88_RS14860 PF00562 RNA polymerase Rpb2, domain 6 C9E88_RS14860 PF10385 RNA polymerase beta subunit external 1 domain C9E88_RS14860 PF04563 RNA polymerase beta subunit C9E88_RS14860 PF04565 RNA polymerase Rpb2, domain 3 C9E88_RS14860 PF04560 RNA polymerase Rpb2, domain 7 C9E88_RS14860 PF04561 RNA polymerase Rpb2, domain 2 C9E88_RS14865 PF16320 Ribosomal protein L7/L12 dimerisation domain C9E88_RS14865 PF00542 Ribosomal protein L7/L12 C-terminal domain C9E88_RS14870 PF00466 Ribosomal protein L10 C9E88_RS14875 PF00687 Ribosomal protein L1p/L10e family C9E88_RS14880 PF03946 Ribosomal protein L11, N-terminal domain C9E88_RS14880 PF00298 Ribosomal protein L11, RNA binding domain C9E88_RS14885 PF02357 Transcription termination factor nusG C9E88_RS14885 PF00467 KOW motif C9E88_RS14890 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C9E88_RS14900 PF00009 Elongation factor Tu GTP binding domain C9E88_RS14900 PF03144 Elongation factor Tu domain 2 C9E88_RS14900 PF03143 Elongation factor Tu C-terminal domain C9E88_RS14925 PF04715 Anthranilate synthase component I, N terminal region C9E88_RS14925 PF00425 chorismate binding enzyme C9E88_RS14930 PF13419 Haloacid dehalogenase-like hydrolase C9E88_RS14935 PF16697 Inner membrane component of T3SS, cytoplasmic domain C9E88_RS14940 PF03958 Bacterial type II/III secretion system short domain C9E88_RS14940 PF00263 Bacterial type II and III secretion system protein C9E88_RS14955 PF00816 H-NS histone family C9E88_RS14980 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C9E88_RS14980 PF03900 Porphobilinogen deaminase, C-terminal domain C9E88_RS14985 PF00072 Response regulator receiver domain C9E88_RS14985 PF04397 LytTr DNA-binding domain C9E88_RS14990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS14990 PF07694 5TMR of 5TMR-LYT C9E88_RS14990 PF06580 Histidine kinase C9E88_RS14995 PF14698 Argininosuccinate lyase C-terminal C9E88_RS14995 PF00206 Lyase C9E88_RS15000 PF04362 Bacterial Fe(2+) trafficking C9E88_RS15005 PF01066 CDP-alcohol phosphatidyltransferase C9E88_RS15015 PF08459 UvrC Helix-hairpin-helix N-terminal C9E88_RS15015 PF02151 UvrB/uvrC motif C9E88_RS15015 PF01541 GIY-YIG catalytic domain C9E88_RS15025 PF10431 C-terminal, D2-small domain, of ClpB protein C9E88_RS15025 PF07724 AAA domain (Cdc48 subfamily) C9E88_RS15035 PF00378 Enoyl-CoA hydratase/isomerase C9E88_RS15035 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C9E88_RS15035 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C9E88_RS15040 PF00108 Thiolase, N-terminal domain C9E88_RS15040 PF02803 Thiolase, C-terminal domain C9E88_RS15100 PF00475 Imidazoleglycerol-phosphate dehydratase C9E88_RS15105 PF00117 Glutamine amidotransferase class-I C9E88_RS15120 PF00977 Histidine biosynthesis protein C9E88_RS15125 PF00892 EamA-like transporter family C9E88_RS15130 PF01266 FAD dependent oxidoreductase C9E88_RS15135 PF00324 Amino acid permease C9E88_RS15155 PF01636 Phosphotransferase enzyme family C9E88_RS15160 PF00977 Histidine biosynthesis protein C9E88_RS15175 PF12833 Helix-turn-helix domain C9E88_RS15175 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C9E88_RS15200 PF02705 K+ potassium transporter C9E88_RS15225 PF01593 Flavin containing amine oxidoreductase C9E88_RS15230 PF05726 Pirin C-terminal cupin domain C9E88_RS15230 PF02678 Pirin C9E88_RS15235 PF00857 Isochorismatase family C9E88_RS15245 PF10417 C-terminal domain of 1-Cys peroxiredoxin C9E88_RS15245 PF00578 AhpC/TSA family C9E88_RS15250 PF17754 MftR C-terminal domain C9E88_RS15250 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS15260 PF00436 Single-strand binding protein family C9E88_RS15265 PF07690 Major Facilitator Superfamily C9E88_RS15275 PF03070 TENA/THI-4/PQQC family C9E88_RS15280 PF06942 GlpM protein C9E88_RS15295 PF17755 UvrA DNA-binding domain C9E88_RS15295 PF17760 UvrA interaction domain C9E88_RS15305 PF00072 Response regulator receiver domain C9E88_RS15305 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS15325 PF00474 Sodium:solute symporter family C9E88_RS15330 PF04341 Protein of unknown function, DUF485 C9E88_RS15335 PF09456 RcsC Alpha-Beta-Loop (ABL) C9E88_RS15335 PF00072 Response regulator receiver domain C9E88_RS15335 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS15335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS15345 PF00072 Response regulator receiver domain C9E88_RS15345 PF00196 Bacterial regulatory proteins, luxR family C9E88_RS15350 PF03358 NADPH-dependent FMN reductase C9E88_RS15355 PF00296 Luciferase-like monooxygenase C9E88_RS15365 PF00677 Lumazine binding domain C9E88_RS15370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C9E88_RS15370 PF08028 Acyl-CoA dehydrogenase, C-terminal domain C9E88_RS15375 PF16177 Acetyl-coenzyme A synthetase N-terminus C9E88_RS15375 PF00501 AMP-binding enzyme C9E88_RS15375 PF13193 AMP-binding enzyme C-terminal domain C9E88_RS15385 PF00924 Mechanosensitive ion channel C9E88_RS15390 PF04452 RNA methyltransferase C9E88_RS15395 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C9E88_RS15400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C9E88_RS15425 PF17768 RecJ OB domain C9E88_RS15425 PF02272 DHHA1 domain C9E88_RS15425 PF01368 DHH family C9E88_RS15430 PF01243 Pyridoxamine 5'-phosphate oxidase C9E88_RS15430 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C9E88_RS15435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_RS15435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_RS15435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_RS15435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_RS15440 PF00478 IMP dehydrogenase / GMP reductase domain C9E88_RS15440 PF00571 CBS domain C9E88_RS15445 PF03692 Putative zinc- or iron-chelating domain C9E88_RS15455 PF01169 Uncharacterized protein family UPF0016 C9E88_RS15460 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C9E88_RS15460 PF00364 Biotin-requiring enzyme C9E88_RS15460 PF02817 e3 binding domain C9E88_RS15465 PF17831 Pyruvate dehydrogenase E1 component middle domain C9E88_RS15465 PF00456 Transketolase, thiamine diphosphate binding domain C9E88_RS15480 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C9E88_RS15485 PF12327 FtsZ family, C-terminal domain C9E88_RS15485 PF00091 Tubulin/FtsZ family, GTPase domain C9E88_RS15490 PF02491 SHS2 domain inserted in FTSA C9E88_RS15495 PF08478 POTRA domain, FtsQ-type C9E88_RS15495 PF03799 Cell division protein FtsQ C9E88_RS15500 PF01820 D-ala D-ala ligase N-terminus C9E88_RS15500 PF07478 D-ala D-ala ligase C-terminus C9E88_RS15505 PF02875 Mur ligase family, glutamate ligase domain C9E88_RS15505 PF01225 Mur ligase family, catalytic domain C9E88_RS15505 PF08245 Mur ligase middle domain C9E88_RS15510 PF04101 Glycosyltransferase family 28 C-terminal domain C9E88_RS15510 PF03033 Glycosyltransferase family 28 N-terminal domain C9E88_RS15515 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C9E88_RS15515 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C9E88_RS15520 PF00313 'Cold-shock' DNA-binding domain C9E88_RS15530 PF00156 Phosphoribosyl transferase domain C9E88_RS15535 PF03372 Endonuclease/Exonuclease/phosphatase family C9E88_RS15550 PF07859 alpha/beta hydrolase fold C9E88_RS15555 PF02525 Flavodoxin-like fold C9E88_RS15560 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS15570 PF11412 Disulphide bond corrector protein DsbC C9E88_RS15570 PF02683 Cytochrome C biogenesis protein transmembrane region C9E88_RS15595 PF00583 Acetyltransferase (GNAT) family C9E88_RS15605 PF00005 ABC transporter C9E88_RS15610 PF12399 Branched-chain amino acid ATP-binding cassette transporter C9E88_RS15610 PF00005 ABC transporter C9E88_RS15620 PF02653 Branched-chain amino acid transport system / permease component C9E88_RS15630 PF01751 Toprim domain C9E88_RS15630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS15630 PF00204 DNA gyrase B C9E88_RS15630 PF00986 DNA gyrase B subunit, carboxyl terminus C9E88_RS15635 PF05728 Uncharacterised protein family (UPF0227) C9E88_RS15645 PF02600 Disulfide bond formation protein DsbB C9E88_RS15650 PF04262 Glutamate-cysteine ligase C9E88_RS15665 PF04286 Protein of unknown function (DUF445) C9E88_RS15675 PF03485 Arginyl tRNA synthetase N terminal domain C9E88_RS15675 PF00750 tRNA synthetases class I (R) C9E88_RS15675 PF05746 DALR anticodon binding domain C9E88_RS15685 PF02666 Phosphatidylserine decarboxylase C9E88_RS15690 PF00581 Rhodanese-like domain C9E88_RS15695 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C9E88_RS15695 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C9E88_RS15705 PF00199 Catalase C9E88_RS15705 PF06628 Catalase-related immune-responsive C9E88_RS15710 PF02580 D-Tyr-tRNA(Tyr) deacylase C9E88_RS15735 PF01758 Sodium Bile acid symporter family C9E88_RS15740 PF00857 Isochorismatase family C9E88_RS15750 PF07690 Major Facilitator Superfamily C9E88_RS15755 PF00701 Dihydrodipicolinate synthetase family C9E88_RS15765 PF01259 SAICAR synthetase C9E88_RS15770 PF16193 AAA C-terminal domain C9E88_RS15770 PF12002 MgsA AAA+ ATPase C terminal C9E88_RS15770 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS15775 PF00563 EAL domain C9E88_RS15775 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS15775 PF03707 Bacterial signalling protein N terminal repeat C9E88_RS15785 PF03692 Putative zinc- or iron-chelating domain C9E88_RS15790 PF07043 Protein of unknown function (DUF1328) C9E88_RS15795 PF03023 Lipid II flippase MurJ C9E88_RS15800 PF01510 N-acetylmuramoyl-L-alanine amidase C9E88_RS15805 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C9E88_RS15805 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C9E88_RS15810 PF05506 Domain of unknown function (DUF756) C9E88_RS15810 PF04185 Phosphoesterase family C9E88_RS15815 PF03725 3' exoribonuclease family, domain 2 C9E88_RS15815 PF01138 3' exoribonuclease family, domain 1 C9E88_RS15820 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS15825 PF01323 DSBA-like thioredoxin domain C9E88_RS15835 PF13419 Haloacid dehalogenase-like hydrolase C9E88_RS15840 PF00106 short chain dehydrogenase C9E88_RS15860 PF00583 Acetyltransferase (GNAT) family C9E88_RS15860 PF00696 Amino acid kinase family C9E88_RS15865 PF09084 NMT1/THI5 like C9E88_RS15870 PF00296 Luciferase-like monooxygenase C9E88_RS15875 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS15880 PF00005 ABC transporter C9E88_RS15885 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS15885 PF08362 YcdC-like protein, C-terminal region C9E88_RS15905 PF01687 Riboflavin kinase C9E88_RS15905 PF06574 FAD synthetase C9E88_RS15910 PF08264 Anticodon-binding domain of tRNA C9E88_RS15910 PF06827 Zinc finger found in FPG and IleRS C9E88_RS15910 PF00133 tRNA synthetases class I (I, L, M and V) C9E88_RS15915 PF01252 Signal peptidase (SPase) II C9E88_RS15920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C9E88_RS15950 PF07690 Major Facilitator Superfamily C9E88_RS15955 PF07690 Major Facilitator Superfamily C9E88_RS15995 PF00579 tRNA synthetases class I (W and Y) C9E88_RS16000 PF03702 Anhydro-N-acetylmuramic acid kinase C9E88_RS16005 PF13406 Transglycosylase SLT domain C9E88_RS16010 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C9E88_RS16010 PF02222 ATP-grasp domain C9E88_RS16015 PF00731 AIR carboxylase C9E88_RS16025 PF08245 Mur ligase middle domain C9E88_RS16025 PF02875 Mur ligase family, glutamate ligase domain C9E88_RS16025 PF01225 Mur ligase family, catalytic domain C9E88_RS16050 PF07690 Major Facilitator Superfamily C9E88_RS16055 PF03741 Integral membrane protein TerC family C9E88_RS16060 PF01979 Amidohydrolase family C9E88_RS16065 PF00156 Phosphoribosyl transferase domain C9E88_RS16080 PF02583 Metal-sensitive transcriptional repressor C9E88_RS16090 PF10396 GTP-binding protein TrmE N-terminus C9E88_RS16090 PF12631 MnmE helical domain C9E88_RS16090 PF01926 50S ribosome-binding GTPase C9E88_RS16095 PF02096 60Kd inner membrane protein C9E88_RS16095 PF14849 YidC periplasmic domain C9E88_RS16100 PF01809 Putative membrane protein insertion efficiency factor C9E88_RS16105 PF00825 Ribonuclease P C9E88_RS16110 PF00468 Ribosomal protein L34 C9E88_RS16125 PF01551 Peptidase family M23 C9E88_RS16125 PF01464 Transglycosylase SLT domain C9E88_RS16125 PF10145 Phage-related minor tail protein C9E88_RS16140 PF01551 Peptidase family M23 C9E88_RS16140 PF01464 Transglycosylase SLT domain C9E88_RS16140 PF10145 Phage-related minor tail protein C9E88_RS16155 PF00437 Type II/IV secretion system protein C9E88_RS16160 PF03743 Bacterial conjugation TrbI-like protein C9E88_RS16205 PF13614 AAA domain C9E88_RS16270 PF17841 BID domain of Bartonella effector protein (Bep) C9E88_RS16270 PF03389 MobA/MobL family C9E88_RS16270 PF01443 Viral (Superfamily 1) RNA helicase C9E88_RS16295 PF01636 Phosphotransferase enzyme family C9E88_RS16300 PF00665 Integrase core domain C9E88_RS16300 PF13936 Helix-turn-helix domain C9E88_RS16305 PF00753 Metallo-beta-lactamase superfamily C9E88_RS16315 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C9E88_RS16320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C9E88_RS16325 PF03091 CutA1 divalent ion tolerance protein C9E88_RS16330 PF00166 Chaperonin 10 Kd subunit C9E88_RS16335 PF00118 TCP-1/cpn60 chaperonin family C9E88_RS16350 PF00665 Integrase core domain C9E88_RS16350 PF13936 Helix-turn-helix domain C9E88_RS16355 PF02796 Helix-turn-helix domain of resolvase C9E88_RS16355 PF00239 Resolvase, N terminal domain C9E88_RS16370 PF00565 Staphylococcal nuclease homologue C9E88_RS16385 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C9E88_RS16385 PF02142 MGS-like domain C9E88_RS16385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C9E88_RS16390 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_RS16390 PF03449 Transcription elongation factor, N-terminal C9E88_RS16395 PF04072 Leucine carboxyl methyltransferase C9E88_RS16400 PF00132 Bacterial transferase hexapeptide (six repeats) C9E88_RS16420 PF00037 4Fe-4S binding domain C9E88_RS16425 PF01467 Cytidylyltransferase-like C9E88_RS16430 PF01668 SmpB protein C9E88_RS16445 PF02578 Multi-copper polyphenol oxidoreductase laccase C9E88_RS16450 PF00849 RNA pseudouridylate synthase C9E88_RS16450 PF01479 S4 domain C9E88_RS16455 PF13525 Outer membrane lipoprotein C9E88_RS16460 PF01807 CHC2 zinc finger C9E88_RS16460 PF08275 DNA primase catalytic core, N-terminal domain C9E88_RS16460 PF08278 DNA primase DnaG DnaB-binding C9E88_RS16460 PF10410 DnaB-helicase binding domain of primase C9E88_RS16465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C9E88_RS16465 PF01488 Shikimate / quinate 5-dehydrogenase C9E88_RS16465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C9E88_RS16475 PF03550 Outer membrane lipoprotein LolB C9E88_RS16480 PF08544 GHMP kinases C terminal C9E88_RS16480 PF00288 GHMP kinases N terminal domain C9E88_RS16505 PF14572 Phosphoribosyl synthetase-associated domain C9E88_RS16505 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C9E88_RS16510 PF01386 Ribosomal L25p family C9E88_RS16515 PF01195 Peptidyl-tRNA hydrolase C9E88_RS16520 PF02261 Aspartate decarboxylase C9E88_RS16535 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C9E88_RS16560 PF17773 UPF0176 acylphosphatase like domain C9E88_RS16560 PF00581 Rhodanese-like domain C9E88_RS16565 PF09335 SNARE associated Golgi protein C9E88_RS16585 PF04542 Sigma-70 region 2 C9E88_RS16585 PF04539 Sigma-70 region 3 C9E88_RS16585 PF04545 Sigma-70, region 4 C9E88_RS16585 PF03979 Sigma-70 factor, region 1.1 C9E88_RS16585 PF04546 Sigma-70, non-essential region C9E88_RS16585 PF00140 Sigma-70 factor, region 1.2 C9E88_RS16590 PF04359 Protein of unknown function (DUF493) C9E88_RS16595 PF03099 Biotin/lipoate A/B protein ligase family C9E88_RS16605 PF00465 Iron-containing alcohol dehydrogenase C9E88_RS16610 PF13520 Amino acid permease C9E88_RS16620 PF00588 SpoU rRNA Methylase family C9E88_RS16625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C9E88_RS16625 PF10414 Sirohaem synthase dimerisation region C9E88_RS16625 PF14824 Sirohaem biosynthesis protein central C9E88_RS16630 PF02403 Seryl-tRNA synthetase N-terminal domain C9E88_RS16630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C9E88_RS16640 PF03548 Outer membrane lipoprotein carrier protein LolA C9E88_RS16645 PF01016 Ribosomal L27 protein C9E88_RS16650 PF00829 Ribosomal prokaryotic L21 protein C9E88_RS16655 PF00348 Polyprenyl synthetase C9E88_RS16665 PF01569 PAP2 superfamily C9E88_RS16670 PF00529 HlyD membrane-fusion protein of T1SS C9E88_RS16670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C9E88_RS16675 PF00873 AcrB/AcrD/AcrF family C9E88_RS16680 PF02321 Outer membrane efflux protein C9E88_RS16685 PF01906 Putative heavy-metal-binding C9E88_RS16690 PF01906 Putative heavy-metal-binding C9E88_RS16710 PF08264 Anticodon-binding domain of tRNA C9E88_RS16710 PF10458 Valyl tRNA synthetase tRNA binding arm C9E88_RS16710 PF00133 tRNA synthetases class I (I, L, M and V) C9E88_RS16715 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) C9E88_RS16735 PF08448 PAS fold C9E88_RS16735 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS16740 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_RS16745 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS16750 PF00528 Binding-protein-dependent transport system inner membrane component C9E88_RS16755 PF00005 ABC transporter C9E88_RS16760 PF00909 Ammonium Transporter Family C9E88_RS16775 PF08521 Two-component sensor kinase N-terminal C9E88_RS16775 PF00512 His Kinase A (phospho-acceptor) domain C9E88_RS16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C9E88_RS16780 PF00072 Response regulator receiver domain C9E88_RS16780 PF00486 Transcriptional regulatory protein, C terminal C9E88_RS16785 PF00884 Sulfatase C9E88_RS16785 PF08019 Phosphoethanolamine transferase EptA/EptB C9E88_RS16800 PF01734 Patatin-like phospholipase C9E88_RS16810 PF01145 SPFH domain / Band 7 family C9E88_RS16815 PF00474 Sodium:solute symporter family C9E88_RS16820 PF00348 Polyprenyl synthetase C9E88_RS16825 PF04303 PrpF protein C9E88_RS16830 PF00324 Amino acid permease C9E88_RS16860 PF01507 Phosphoadenosine phosphosulfate reductase family C9E88_RS16865 PF06974 Protein of unknown function (DUF1298) C9E88_RS16865 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain C9E88_RS16870 PF00575 S1 RNA binding domain C9E88_RS16870 PF10150 Ribonuclease E/G family C9E88_RS16875 PF02545 Maf-like protein C9E88_RS16880 PF04093 rod shape-determining protein MreD C9E88_RS16885 PF04085 rod shape-determining protein MreC C9E88_RS16895 PF02686 Glu-tRNAGln amidotransferase C subunit C9E88_RS16900 PF01425 Amidase C9E88_RS16905 PF02637 GatB domain C9E88_RS16905 PF02934 GatB/GatE catalytic domain C9E88_RS16935 PF05992 SbmA/BacA-like family C9E88_RS16975 PF01235 Sodium:alanine symporter family C9E88_RS16985 PF18073 Rubredoxin metal binding domain C9E88_RS16995 PF08238 Sel1 repeat C9E88_RS17010 PF05221 S-adenosyl-L-homocysteine hydrolase C9E88_RS17010 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain C9E88_RS17015 PF02219 Methylenetetrahydrofolate reductase C9E88_RS17020 PF04452 RNA methyltransferase C9E88_RS17025 PF00563 EAL domain C9E88_RS17025 PF00498 FHA domain C9E88_RS17025 PF00990 Diguanylate cyclase, GGDEF domain C9E88_RS17030 PF00390 Malic enzyme, N-terminal domain C9E88_RS17030 PF01515 Phosphate acetyl/butaryl transferase C9E88_RS17030 PF03949 Malic enzyme, NAD binding domain C9E88_RS17035 PF01743 Poly A polymerase head domain C9E88_RS17035 PF12627 Probable RNA and SrmB- binding site of polymerase A C9E88_RS17045 PF00152 tRNA synthetases class II (D, K and N) C9E88_RS17050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C9E88_RS17050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C9E88_RS17050 PF11890 Domain of unknown function (DUF3410) C9E88_RS17055 PF00596 Class II Aldolase and Adducin N-terminal domain C9E88_RS17070 PF01272 Transcription elongation factor, GreA/GreB, C-term C9E88_RS17070 PF03449 Transcription elongation factor, N-terminal C9E88_RS17075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS17075 PF03466 LysR substrate binding domain C9E88_RS17080 PF01464 Transglycosylase SLT domain C9E88_RS17080 PF00497 Bacterial extracellular solute-binding proteins, family 3 C9E88_RS17090 PF01171 PP-loop family C9E88_RS17100 PF01464 Transglycosylase SLT domain C9E88_RS17100 PF10145 Phage-related minor tail protein C9E88_RS17100 PF01551 Peptidase family M23 C9E88_RS17105 PF01435 Peptidase family M48 C9E88_RS17115 PF00571 CBS domain C9E88_RS17115 PF03448 MgtE intracellular N domain C9E88_RS17115 PF01769 Divalent cation transporter C9E88_RS17120 PF00873 AcrB/AcrD/AcrF family C9E88_RS17140 PF01219 Prokaryotic diacylglycerol kinase C9E88_RS17145 PF00463 Isocitrate lyase family C9E88_RS17150 PF03466 LysR substrate binding domain C9E88_RS17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C9E88_RS17155 PF01595 Cyclin M transmembrane N-terminal domain C9E88_RS17155 PF03471 Transporter associated domain C9E88_RS17155 PF00571 CBS domain C9E88_RS17160 PF03600 Citrate transporter C9E88_RS17175 PF16655 PhoD-like phosphatase, N-terminal domain C9E88_RS17175 PF09423 PhoD-like phosphatase C9E88_RS17190 PF00809 Pterin binding enzyme C9E88_RS17195 PF00004 ATPase family associated with various cellular activities (AAA) C9E88_RS17195 PF06480 FtsH Extracellular C9E88_RS17195 PF17862 AAA+ lid domain C9E88_RS17195 PF01434 Peptidase family M41 C9E88_RS17200 PF01728 FtsJ-like methyltransferase C9E88_RS17205 PF01985 CRS1 / YhbY (CRM) domain C9E88_RS17220 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C9E88_RS17220 PF00117 Glutamine amidotransferase class-I C9E88_RS17225 PF13737 Transposase DDE domain C9E88_RS17230 PF01636 Phosphotransferase enzyme family C9E88_RS17235 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase C9E88_RS17245 PF05973 Phage derived protein Gp49-like (DUF891) C9E88_RS17260 PF00239 Resolvase, N terminal domain C9E88_RS17260 PF02796 Helix-turn-helix domain of resolvase C9E88_RS17265 PF01636 Phosphotransferase enzyme family C9E88_RS17270 PF12848 ABC transporter C9E88_RS17270 PF00005 ABC transporter C9E88_RS17285 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS17285 PF02909 Tetracyclin repressor-like, C-terminal domain C9E88_RS17290 PF07690 Major Facilitator Superfamily C9E88_RS17300 PF01051 Initiator Replication protein C9E88_RS17305 PF01443 Viral (Superfamily 1) RNA helicase C9E88_RS17305 PF17841 BID domain of Bartonella effector protein (Bep) C9E88_RS17305 PF03389 MobA/MobL family C9E88_RS17330 PF00809 Pterin binding enzyme C9E88_RS17335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C9E88_RS17335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C9E88_RS17335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C9E88_RS17335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C9E88_RS17340 PF08463 EcoEI R protein C-terminal C9E88_RS17340 PF00271 Helicase conserved C-terminal domain C9E88_RS17340 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) C9E88_RS17340 PF04851 Type III restriction enzyme, res subunit C9E88_RS17350 PF13614 AAA domain C9E88_RS17355 PF00717 Peptidase S24-like C9E88_RS17355 PF01726 LexA DNA binding domain C9E88_RS17370 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system C9E88_RS17380 PF02909 Tetracyclin repressor-like, C-terminal domain C9E88_RS17380 PF00440 Bacterial regulatory proteins, tetR family C9E88_RS17385 PF07690 Major Facilitator Superfamily C9E88_RS17395 PF01051 Initiator Replication protein C9E88_RS17415 PF03389 MobA/MobL family C9E88_RS17415 PF16793 RepB DNA-primase from phage plasmid C9E88_RS17425 PF01051 Initiator Replication protein C9E88_RS17465 PF01076 Plasmid recombination enzyme