locus-tag	class	description
AhaeAN54_RS00060	COG3550	peptidyl-serine autophosphorylation
AhaeAN54_RS00065	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AhaeAN54_RS00185	COG0735	belongs to the Fur family
AhaeAN54_RS00245	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AhaeAN54_RS00255	COG4115	mRNA cleavage
AhaeAN54_RS00275	COG0477	Major facilitator Superfamily
AhaeAN54_RS00280	COG1024	Enoyl-CoA hydratase
AhaeAN54_RS00285	COG1024	Enoyl-CoA hydratase
AhaeAN54_RS00290	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS00295	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AhaeAN54_RS00315	COG1113	amino acid transport
AhaeAN54_RS00320	COG0251	oxidation-reduction process
AhaeAN54_RS00350	COG0456	acetyltransferase
AhaeAN54_RS00360	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AhaeAN54_RS00390	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AhaeAN54_RS00410	COG1802	Transcriptional regulator
AhaeAN54_RS00415	COG1448	Aminotransferase
AhaeAN54_RS00420	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AhaeAN54_RS00425	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AhaeAN54_RS00440	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AhaeAN54_RS00450	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AhaeAN54_RS00460	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AhaeAN54_RS00485	COG1216	Glycosyl transferase, family 2
AhaeAN54_RS00490	COG5039	Polysaccharide pyruvyl transferase
AhaeAN54_RS00500	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AhaeAN54_RS00535	COG3023	N-Acetylmuramoyl-L-alanine amidase
AhaeAN54_RS00585	COG0546	phosphoglycolate phosphatase activity
AhaeAN54_RS00590	COG1028	Short-chain dehydrogenase reductase Sdr
AhaeAN54_RS00600	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AhaeAN54_RS00600	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AhaeAN54_RS00605	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_RS00610	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_RS00615	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AhaeAN54_RS00620	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AhaeAN54_RS00625	COG1116	anion transmembrane transporter activity
AhaeAN54_RS00630	COG1309	transcriptional regulator
AhaeAN54_RS00640	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AhaeAN54_RS00650	COG0196	riboflavin kinase activity
AhaeAN54_RS00655	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AhaeAN54_RS00665	COG1047	Peptidyl-prolyl cis-trans
AhaeAN54_RS00705	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AhaeAN54_RS00710	COG0657	acetylesterase activity
AhaeAN54_RS00730	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS00740	COG0443	Heat shock 70 kDa protein
AhaeAN54_RS00745	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
AhaeAN54_RS00770	COG2951	lytic endotransglycosylase activity
AhaeAN54_RS00775	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AhaeAN54_RS00795	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AhaeAN54_RS00815	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS00825	COG0861	Integral membrane protein TerC family
AhaeAN54_RS00850	COG0402	S-adenosylhomocysteine deaminase activity
AhaeAN54_RS00865	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AhaeAN54_RS00875	COG0706	membrane insertase activity
AhaeAN54_RS00900	COG0592	DNA-directed DNA polymerase activity
AhaeAN54_RS00910	COG0187	DNA topoisomerase II activity
AhaeAN54_RS00915	COG0586	Pfam SNARE associated Golgi protein
AhaeAN54_RS00920	COG0488	(ABC) transporter
AhaeAN54_RS00945	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AhaeAN54_RS00950	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AhaeAN54_RS00990	COG3273	potassium ion transport
AhaeAN54_RS00990	COG0471	metal ion transport
AhaeAN54_RS01000	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_RS01020	COG4372	Transposase
AhaeAN54_RS01035	COG0733	neurotransmitter:sodium symporter activity
AhaeAN54_RS01075	COG2233	PERMEase
AhaeAN54_RS01090	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_RS01105	COG0484	heat shock protein binding
AhaeAN54_RS01120	COG2814	Major facilitator Superfamily
AhaeAN54_RS01125	COG0656	L-ascorbic acid biosynthetic process
AhaeAN54_RS01130	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS01140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AhaeAN54_RS01145	COG1064	alcohol dehydrogenase
AhaeAN54_RS01150	COG2818	Glycosylase
AhaeAN54_RS01165	COG1194	a g-specific adenine glycosylase
AhaeAN54_RS01175	COG5487	UPF0391 membrane protein
AhaeAN54_RS01180	COG2983	Belongs to the UPF0260 family
AhaeAN54_RS01185	COG2133	pyrroloquinoline quinone binding
AhaeAN54_RS01195	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AhaeAN54_RS01205	COG1228	amidohydrolase
AhaeAN54_RS01210	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AhaeAN54_RS01220	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AhaeAN54_RS01225	COG1335	isochorismatase
AhaeAN54_RS01230	COG1522	sequence-specific DNA binding
AhaeAN54_RS01355	COG0633	Ferredoxin
AhaeAN54_RS01405	COG2814	Major facilitator Superfamily
AhaeAN54_RS01460	COG0789	Transcriptional regulator
AhaeAN54_RS01465	COG2217	Heavy metal translocating P-type atpase
AhaeAN54_RS01470	COG0640	Transcriptional regulator
AhaeAN54_RS01480	COG1230	cation diffusion facilitator family transporter
AhaeAN54_RS01485	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_RS01605	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AhaeAN54_RS01615	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AhaeAN54_RS01620	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AhaeAN54_RS01625	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AhaeAN54_RS01645	COG0560	Phosphoserine phosphatase
AhaeAN54_RS01645	COG3830	Belongs to the UPF0237 family
AhaeAN54_RS01690	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS01720	COG0534	Mate efflux family protein
AhaeAN54_RS01725	COG0436	Aminotransferase
AhaeAN54_RS01735	COG2733	membrane
AhaeAN54_RS01750	COG2918	glutathione biosynthetic process
AhaeAN54_RS01765	COG3150	esterase
AhaeAN54_RS01810	COG1247	-acetyltransferase
AhaeAN54_RS01845	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS01885	COG1132	(ABC) transporter
AhaeAN54_RS01905	COG1393	Belongs to the ArsC family
AhaeAN54_RS01910	COG0708	Exodeoxyribonuclease III
AhaeAN54_RS01930	COG0300	oxidoreductase activity
AhaeAN54_RS01945	COG2801	Transposase and inactivated derivatives
AhaeAN54_RS01960	COG0386	Belongs to the glutathione peroxidase family
AhaeAN54_RS01965	COG0189	ligase activity
AhaeAN54_RS01985	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AhaeAN54_RS02035	COG2119	membrane
AhaeAN54_RS02040	COG4774	siderophore transport
AhaeAN54_RS02045	COG0426	domain, Protein
AhaeAN54_RS02045	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AhaeAN54_RS02070	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AhaeAN54_RS02090	COG1902	pentaerythritol trinitrate reductase activity
AhaeAN54_RS02100	COG1519	Transferase
AhaeAN54_RS02110	COG0668	transmembrane transport
AhaeAN54_RS02115	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AhaeAN54_RS02170	COG0351	phosphomethylpyrimidine kinase
AhaeAN54_RS02170	COG0352	thiamine-phosphate diphosphorylase activity
AhaeAN54_RS02170	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AhaeAN54_RS02180	COG2814	Major facilitator Superfamily
AhaeAN54_RS02205	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AhaeAN54_RS02210	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_RS02220	COG1335	isochorismatase
AhaeAN54_RS02230	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
AhaeAN54_RS02290	COG0582	viral genome integration into host DNA
AhaeAN54_RS02310	COG0629	single-stranded DNA binding
AhaeAN54_RS02375	COG2801	Transposase and inactivated derivatives
AhaeAN54_RS02420	COG0582	viral genome integration into host DNA
AhaeAN54_RS02430	COG3158	transport of potassium into the cell
AhaeAN54_RS02445	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AhaeAN54_RS02465	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AhaeAN54_RS02485	COG0659	secondary active sulfate transmembrane transporter activity
AhaeAN54_RS02500	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS02505	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AhaeAN54_RS02535	COG0427	acetyl-CoA hydrolase
AhaeAN54_RS02570	COG1028	Short-chain dehydrogenase reductase Sdr
AhaeAN54_RS02575	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS02585	COG0789	Transcriptional regulator
AhaeAN54_RS02590	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AhaeAN54_RS02590	COG3320	Male sterility
AhaeAN54_RS02595	COG4221	oxidoreductase activity
AhaeAN54_RS02600	COG2873	o-acetylhomoserine
AhaeAN54_RS02605	COG0488	(ABC) transporter
AhaeAN54_RS02740	COG0833	amino acid
AhaeAN54_RS02765	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AhaeAN54_RS02785	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AhaeAN54_RS02790	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AhaeAN54_RS02795	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AhaeAN54_RS02800	COG2226	methyltransferase
AhaeAN54_RS02850	COG0069	glutamate synthase activity
AhaeAN54_RS02850	COG0070	glutamate synthase
AhaeAN54_RS02850	COG0067	glutamate synthase
AhaeAN54_RS02855	COG0493	'glutamate synthase
AhaeAN54_RS02865	COG1704	LemA family
AhaeAN54_RS02870	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AhaeAN54_RS02885	COG1487	ribonuclease activity
AhaeAN54_RS02915	COG3307	-O-antigen
AhaeAN54_RS02935	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AhaeAN54_RS02945	COG0194	GDP metabolic process
AhaeAN54_RS02950	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AhaeAN54_RS02955	COG4969	Belongs to the N-Me-Phe pilin family
AhaeAN54_RS03020	COG0228	four-way junction DNA binding
AhaeAN54_RS03025	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AhaeAN54_RS03035	COG0335	large ribosomal subunit rRNA binding
AhaeAN54_RS03045	COG5380	lipid catabolic process
AhaeAN54_RS03050	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AhaeAN54_RS03075	COG1196	nuclear chromosome segregation
AhaeAN54_RS03075	COG0741	lytic transglycosylase activity
AhaeAN54_RS03075	COG0739	heme binding
AhaeAN54_RS03080	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AhaeAN54_RS03085	COG0277	FAD linked oxidase domain protein
AhaeAN54_RS03100	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AhaeAN54_RS03105	COG2249	NAD(P)H dehydrogenase (quinone) activity
AhaeAN54_RS03120	COG1289	transmembrane transporter activity
AhaeAN54_RS03125	COG0628	permease
AhaeAN54_RS03130	COG1192	Involved in chromosome partitioning
AhaeAN54_RS03140	COG2226	methyltransferase
AhaeAN54_RS03175	COG1404	Belongs to the peptidase S8 family
AhaeAN54_RS03185	COG2072	flavoprotein involved in K transport
AhaeAN54_RS03245	COG0471	metal ion transport
AhaeAN54_RS03255	COG1983	PspC domain protein
AhaeAN54_RS03265	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS03290	COG0408	coproporphyrinogen oxidase activity
AhaeAN54_RS03325	COG1127	ABC transporter
AhaeAN54_RS03330	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AhaeAN54_RS03335	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AhaeAN54_RS03340	COG2854	intermembrane phospholipid transfer
AhaeAN54_RS03355	COG0598	Magnesium transport protein CorA
AhaeAN54_RS03370	COG1040	competence protein
AhaeAN54_RS03375	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AhaeAN54_RS03390	COG2937	Belongs to the GPAT DAPAT family
AhaeAN54_RS03395	COG1946	Acyl-CoA thioesterase
AhaeAN54_RS03400	COG1301	dicarboxylic acid transport
AhaeAN54_RS03425	COG1959	2 iron, 2 sulfur cluster binding
AhaeAN54_RS03435	COG0433	COG0433 Predicted ATPase
AhaeAN54_RS03455	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AhaeAN54_RS03475	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AhaeAN54_RS03525	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AhaeAN54_RS03605	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS03610	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AhaeAN54_RS03640	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AhaeAN54_RS03665	COG0339	signal peptide processing
AhaeAN54_RS03670	COG0557	exoribonuclease II activity
AhaeAN54_RS03750	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS03770	COG0179	Fumarylacetoacetate (FAA) hydrolase
AhaeAN54_RS03780	COG2207	Transcriptional regulator
AhaeAN54_RS03790	COG1295	ribonuclease BN
AhaeAN54_RS03820	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AhaeAN54_RS03845	COG2813	Specifically methylates the guanine in position
AhaeAN54_RS03845	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AhaeAN54_RS03855	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AhaeAN54_RS03865	COG4771	TonB-dependent receptor
AhaeAN54_RS03875	COG0740	serine-type endopeptidase activity
AhaeAN54_RS03895	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AhaeAN54_RS03895	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AhaeAN54_RS03900	COG1917	Cupin 2, conserved barrel domain protein
AhaeAN54_RS03900	COG2207	Transcriptional regulator
AhaeAN54_RS03925	COG0857	belongs to the CobB CobQ family
AhaeAN54_RS03925	COG0280	phosphate acetyltransferase
AhaeAN54_RS03930	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AhaeAN54_RS03945	COG2267	carboxylic ester hydrolase activity
AhaeAN54_RS03960	COG0793	Belongs to the peptidase S41A family
AhaeAN54_RS03980	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AhaeAN54_RS03990	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AhaeAN54_RS03995	COG1408	metallophosphoesterase
AhaeAN54_RS04010	COG2199	diguanylate cyclase activity
AhaeAN54_RS04050	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS04065	COG1309	transcriptional regulator
AhaeAN54_RS04080	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AhaeAN54_RS04085	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS04140	COG2969	positive regulation of protein catabolic process
AhaeAN54_RS04145	COG0625	glutathione transferase activity
AhaeAN54_RS04150	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AhaeAN54_RS04155	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AhaeAN54_RS04165	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AhaeAN54_RS04170	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AhaeAN54_RS04175	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AhaeAN54_RS04190	COG2975	iron-sulfur cluster assembly
AhaeAN54_RS04210	COG1426	Protein conserved in bacteria
AhaeAN54_RS04245	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AhaeAN54_RS04255	COG1862	Preprotein translocase
AhaeAN54_RS04285	COG2205	protein histidine kinase activity
AhaeAN54_RS04285	COG0784	Response regulator, receiver
AhaeAN54_RS04285	COG5002	protein histidine kinase activity
AhaeAN54_RS04290	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
AhaeAN54_RS04300	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AhaeAN54_RS04325	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AhaeAN54_RS04325	COG2755	lipolytic protein G-D-S-L family
AhaeAN54_RS04360	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AhaeAN54_RS04400	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS04405	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS04415	COG2205	protein histidine kinase activity
AhaeAN54_RS04420	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_RS04435	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AhaeAN54_RS04455	COG2096	Adenosyltransferase
AhaeAN54_RS04460	COG4206	TonB-dependent receptor
AhaeAN54_RS04510	COG0285	dihydrofolate synthase activity
AhaeAN54_RS04525	COG0450	alkyl hydroperoxide reductase
AhaeAN54_RS04545	COG0477	Major facilitator Superfamily
AhaeAN54_RS04550	COG1272	protein, Hemolysin III
AhaeAN54_RS04580	COG1024	Enoyl-CoA hydratase
AhaeAN54_RS04580	COG1250	3-hydroxyacyl-CoA dehydrogenase
AhaeAN54_RS04585	COG0183	Belongs to the thiolase family
AhaeAN54_RS04595	COG2207	Transcriptional regulator
AhaeAN54_RS04600	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AhaeAN54_RS04635	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_RS04650	COG0183	Belongs to the thiolase family
AhaeAN54_RS04660	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AhaeAN54_RS04660	COG2885	chlorophyll binding
AhaeAN54_RS04665	COG2885	chlorophyll binding
AhaeAN54_RS04665	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
AhaeAN54_RS04670	COG1690	Belongs to the RtcB family
AhaeAN54_RS04675	COG0833	amino acid
AhaeAN54_RS04685	COG2233	PERMEase
AhaeAN54_RS04690	COG1217	gtp-binding protein TYPA
AhaeAN54_RS04715	COG4772	TonB-dependent receptor
AhaeAN54_RS04725	COG0354	folic acid binding
AhaeAN54_RS04735	COG2824	Alkylphosphonate utilization operon protein PhnA
AhaeAN54_RS04740	COG3422	double-strand break repair
AhaeAN54_RS04770	COG0840	transmembrane signaling receptor activity
AhaeAN54_RS04775	COG0643	Histidine kinase
AhaeAN54_RS04775	COG2198	Histidine kinase
AhaeAN54_RS04775	COG2198	Histidine kinase
AhaeAN54_RS04775	COG0643	Histidine kinase
AhaeAN54_RS04790	COG5510	response to toxic substance
AhaeAN54_RS04800	COG2832	Protein of unknown function (DUF454)
AhaeAN54_RS04805	COG1376	ErfK ybiS ycfS ynhG family protein
AhaeAN54_RS04850	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AhaeAN54_RS04860	COG1289	transmembrane transporter activity
AhaeAN54_RS04865	COG2814	Major facilitator Superfamily
AhaeAN54_RS04880	COG0786	glutamate:sodium symporter activity
AhaeAN54_RS04885	COG1115	amino acid carrier protein
AhaeAN54_RS04890	COG1752	Esterase of the alpha-beta hydrolase superfamily
AhaeAN54_RS04895	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
AhaeAN54_RS04940	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS04955	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AhaeAN54_RS04965	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AhaeAN54_RS04970	COG1077	Cell shape determining protein MreB Mrl
AhaeAN54_RS04975	COG1792	Involved in formation and maintenance of cell shape
AhaeAN54_RS04985	COG0424	maF-like protein
AhaeAN54_RS04990	COG1530	ribonuclease E activity
AhaeAN54_RS05000	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AhaeAN54_RS05010	COG0560	Phosphoserine phosphatase
AhaeAN54_RS05020	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
AhaeAN54_RS05025	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
AhaeAN54_RS05030	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
AhaeAN54_RS05035	COG2205	protein histidine kinase activity
AhaeAN54_RS05040	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_RS05050	COG0671	phosphoesterase, PA-phosphatase related
AhaeAN54_RS05060	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AhaeAN54_RS05085	COG1113	amino acid transport
AhaeAN54_RS05090	COG2828	Protein conserved in bacteria
AhaeAN54_RS05095	COG0142	geranyltranstransferase activity
AhaeAN54_RS05110	COG1752	Esterase of the alpha-beta hydrolase superfamily
AhaeAN54_RS05130	COG2194	sulfuric ester hydrolase activity
AhaeAN54_RS05135	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_RS05140	COG0642	Histidine kinase
AhaeAN54_RS05150	COG1126	abc transporter atp-binding protein
AhaeAN54_RS05155	COG0765	amino acid transport
AhaeAN54_RS05160	COG0765	amino acid transport
AhaeAN54_RS05170	COG0004	ammonium transporteR
AhaeAN54_RS05190	COG0525	valine-tRNA ligase activity
AhaeAN54_RS05205	COG1028	Short-chain dehydrogenase reductase Sdr
AhaeAN54_RS05215	COG0393	Putative heavy-metal-binding
AhaeAN54_RS05220	COG0393	Putative heavy-metal-binding
AhaeAN54_RS05225	COG1538	Outer membrane efflux protein
AhaeAN54_RS05235	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_RS05240	COG0671	phosphoesterase, PA-phosphatase related
AhaeAN54_RS05270	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AhaeAN54_RS05285	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AhaeAN54_RS05285	COG1648	precorrin-2 dehydrogenase activity
AhaeAN54_RS05290	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AhaeAN54_RS05300	COG1733	regulation of RNA biosynthetic process
AhaeAN54_RS05310	COG0531	amino acid
AhaeAN54_RS05325	COG0321	lipoyl(octanoyl) transferase activity
AhaeAN54_RS05355	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_RS05365	COG0500	methyltransferase
AhaeAN54_RS05370	COG0586	Pfam SNARE associated Golgi protein
AhaeAN54_RS05375	COG1054	Belongs to the UPF0176 family
AhaeAN54_RS05390	COG2009	succinate dehydrogenase
AhaeAN54_RS05395	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AhaeAN54_RS05400	COG1053	succinate dehydrogenase
AhaeAN54_RS05405	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AhaeAN54_RS05425	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AhaeAN54_RS05440	COG2268	Band 7 protein
AhaeAN54_RS05445	COG1585	Membrane protein implicated in regulation of membrane protease activity
AhaeAN54_RS05455	COG2354	Protein conserved in bacteria
AhaeAN54_RS05460	COG2321	neutral zinc metallopeptidase
AhaeAN54_RS05485	COG0110	maltose O-acetyltransferase activity
AhaeAN54_RS05505	COG0505	Belongs to the CarA family
AhaeAN54_RS05530	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AhaeAN54_RS05545	COG2304	oxidoreductase activity
AhaeAN54_RS05580	COG0584	glycerophosphoryl diester phosphodiesterase
AhaeAN54_RS05585	COG2194	sulfuric ester hydrolase activity
AhaeAN54_RS05590	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_RS05595	COG2239	Acts as a magnesium transporter
AhaeAN54_RS05605	COG0501	Belongs to the peptidase M48B family
AhaeAN54_RS05610	COG0739	heme binding
AhaeAN54_RS05610	COG0741	lytic transglycosylase activity
AhaeAN54_RS05610	COG1196	nuclear chromosome segregation
AhaeAN54_RS05625	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AhaeAN54_RS05640	COG1301	dicarboxylic acid transport
AhaeAN54_RS05645	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS05670	COG2885	chlorophyll binding
AhaeAN54_RS05685	COG3293	Transposase
AhaeAN54_RS05710	COG3293	Transposase
AhaeAN54_RS05725	COG0725	ABC transporter, periplasmic molybdate-binding protein
AhaeAN54_RS05730	COG4149	molybdate abc transporter
AhaeAN54_RS05745	COG4521	taurine ABC transporter
AhaeAN54_RS05750	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
AhaeAN54_RS05755	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AhaeAN54_RS05760	COG2175	clavaminate synthase activity
AhaeAN54_RS05790	COG0589	response to stress
AhaeAN54_RS05805	COG0242	peptide deformylase activity
AhaeAN54_RS05845	COG0306	phosphate transporter
AhaeAN54_RS05860	COG1115	amino acid carrier protein
AhaeAN54_RS05870	COG0019	diaminopimelate decarboxylase activity
AhaeAN54_RS05875	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AhaeAN54_RS05885	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_RS05890	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AhaeAN54_RS05930	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_RS05950	COG1671	Belongs to the UPF0178 family
AhaeAN54_RS05975	COG4591	ABC-type transport system involved in lipoprotein release permease component
AhaeAN54_RS05980	COG1136	(ABC) transporter
AhaeAN54_RS05985	COG0658	competence protein
AhaeAN54_RS05985	COG2333	competence protein COMEC
AhaeAN54_RS05995	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AhaeAN54_RS05995	COG0616	signal peptide processing
AhaeAN54_RS06005	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AhaeAN54_RS06015	COG0628	permease
AhaeAN54_RS06055	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AhaeAN54_RS06075	COG0823	Involved in the tonB-independent uptake of proteins
AhaeAN54_RS06095	COG0824	Thioesterase
AhaeAN54_RS06105	COG2255	four-way junction helicase activity
AhaeAN54_RS06125	COG0047	phosphoribosylformylglycinamidine synthase activity
AhaeAN54_RS06125	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AhaeAN54_RS06140	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AhaeAN54_RS06140	COG3323	Protein of unknown function (DUF1653)
AhaeAN54_RS06145	COG0778	Nitroreductase
AhaeAN54_RS06155	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AhaeAN54_RS06155	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AhaeAN54_RS06155	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AhaeAN54_RS06160	COG1105	Belongs to the carbohydrate kinase PfkB family
AhaeAN54_RS06165	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AhaeAN54_RS06165	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AhaeAN54_RS06170	COG1024	Enoyl-CoA hydratase
AhaeAN54_RS06175	COG1056	cytidyltransferase-related domain
AhaeAN54_RS06175	COG1051	belongs to the nudix hydrolase family
AhaeAN54_RS06180	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS06185	COG1942	4-Oxalocrotonate Tautomerase
AhaeAN54_RS06205	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AhaeAN54_RS06220	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AhaeAN54_RS06225	COG0602	queuosine metabolic process
AhaeAN54_RS06240	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS06245	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AhaeAN54_RS06250	COG4208	sulfate ABC transporter
AhaeAN54_RS06255	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AhaeAN54_RS06265	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
AhaeAN54_RS06270	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AhaeAN54_RS06275	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AhaeAN54_RS06305	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS06310	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS06335	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AhaeAN54_RS06345	COG0481	GTPase activity
AhaeAN54_RS06360	COG0571	ribonuclease III activity
AhaeAN54_RS06365	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AhaeAN54_RS06380	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AhaeAN54_RS06415	COG0436	Aminotransferase
AhaeAN54_RS06435	COG0556	nucleotide-excision repair
AhaeAN54_RS06480	COG1840	ABC-type Fe3 transport system, periplasmic component
AhaeAN54_RS06485	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
AhaeAN54_RS06505	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS06510	COG0596	Alpha beta hydrolase
AhaeAN54_RS06515	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_RS06520	COG1773	rubredoxin
AhaeAN54_RS06530	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AhaeAN54_RS06540	COG0175	sulfate reduction
AhaeAN54_RS06555	COG0222	ribosome binding
AhaeAN54_RS06560	COG1253	flavin adenine dinucleotide binding
AhaeAN54_RS06580	COG3015	lipoprotein NlpE involved in copper resistance
AhaeAN54_RS06600	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AhaeAN54_RS06600	COG0517	IMP dehydrogenase activity
AhaeAN54_RS06605	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
AhaeAN54_RS06615	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AhaeAN54_RS06620	COG1137	ATPase activity
AhaeAN54_RS06655	COG4122	O-methyltransferase activity
AhaeAN54_RS06660	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS06670	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AhaeAN54_RS06710	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AhaeAN54_RS06740	COG4783	chaperone-mediated protein folding
AhaeAN54_RS06760	COG1610	YqeY-like protein
AhaeAN54_RS06780	COG2963	transposase activity
AhaeAN54_RS06785	COG2801	Transposase and inactivated derivatives
AhaeAN54_RS06840	COG2815	serine threonine protein kinase
AhaeAN54_RS06840	COG0515	serine threonine protein kinase
AhaeAN54_RS06860	COG0028	Belongs to the TPP enzyme family
AhaeAN54_RS06880	COG0482	sulfurtransferase activity
AhaeAN54_RS06900	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AhaeAN54_RS06905	COG1686	Belongs to the peptidase S11 family
AhaeAN54_RS06925	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AhaeAN54_RS06935	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS06940	COG1067	ATP-dependent peptidase activity
AhaeAN54_RS06960	COG0254	rRNA binding
AhaeAN54_RS06980	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AhaeAN54_RS06985	COG1966	Carbon starvation protein
AhaeAN54_RS06990	COG2879	small protein
AhaeAN54_RS06995	COG0714	Associated with various cellular activities
AhaeAN54_RS07280	COG3604	Transcriptional regulator
AhaeAN54_RS07305	COG2144	transferase activity, transferring acyl groups
AhaeAN54_RS07315	COG2072	flavoprotein involved in K transport
AhaeAN54_RS07325	COG0582	viral genome integration into host DNA
AhaeAN54_RS07340	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AhaeAN54_RS07370	COG0732	type I restriction modification DNA specificity domain
AhaeAN54_RS07385	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
AhaeAN54_RS07425	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
AhaeAN54_RS07430	COG2116	formate transmembrane transporter activity
AhaeAN54_RS07435	COG0515	serine threonine protein kinase
AhaeAN54_RS07460	COG1741	Belongs to the pirin family
AhaeAN54_RS07475	COG0446	pyridine nucleotide-disulphide oxidoreductase
AhaeAN54_RS07475	COG1902	pentaerythritol trinitrate reductase activity
AhaeAN54_RS07485	COG0582	viral genome integration into host DNA
AhaeAN54_RS07625	COG1230	cation diffusion facilitator family transporter
AhaeAN54_RS07685	COG2814	Major facilitator Superfamily
AhaeAN54_RS07690	COG1238	metal cluster binding
AhaeAN54_RS07715	COG4804	nuclease activity
AhaeAN54_RS07740	COG2271	Major facilitator Superfamily
AhaeAN54_RS07755	COG0642	Histidine kinase
AhaeAN54_RS07780	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AhaeAN54_RS07820	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AhaeAN54_RS07825	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AhaeAN54_RS07825	COG4451	ribulose bisphosphate carboxylase, small
AhaeAN54_RS07830	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AhaeAN54_RS07835	COG1469	GTP cyclohydrolase I activity
AhaeAN54_RS07850	COG0523	cobalamin synthesis protein
AhaeAN54_RS07855	COG1414	Transcriptional regulator
AhaeAN54_RS07860	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AhaeAN54_RS07865	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AhaeAN54_RS07870	COG0183	Belongs to the thiolase family
AhaeAN54_RS07875	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AhaeAN54_RS07880	COG0596	Alpha beta hydrolase
AhaeAN54_RS07885	COG2271	Major facilitator Superfamily
AhaeAN54_RS07890	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AhaeAN54_RS07895	COG3485	protocatechuate 3,4-dioxygenase
AhaeAN54_RS07900	COG3485	protocatechuate 3,4-dioxygenase
AhaeAN54_RS07905	COG0710	3-dehydroquinate dehydratase activity
AhaeAN54_RS07925	COG3659	wide pore channel activity
AhaeAN54_RS07950	COG2351	hydroxyisourate hydrolase activity
AhaeAN54_RS07955	COG2233	PERMEase
AhaeAN54_RS07975	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_RS07985	COG4266	Belongs to the allantoicase family
AhaeAN54_RS08010	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_RS08020	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AhaeAN54_RS08035	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS08045	COG2188	Transcriptional regulator
AhaeAN54_RS08065	COG0010	Belongs to the arginase family
AhaeAN54_RS08070	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AhaeAN54_RS08075	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AhaeAN54_RS08120	COG0243	molybdopterin cofactor binding
AhaeAN54_RS08125	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AhaeAN54_RS08130	COG2837	iron assimilation
AhaeAN54_RS08140	COG1538	Outer membrane efflux protein
AhaeAN54_RS08145	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_RS08150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_RS08155	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_RS08160	COG5002	protein histidine kinase activity
AhaeAN54_RS08165	COG3040	lipid binding
AhaeAN54_RS08185	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AhaeAN54_RS08195	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AhaeAN54_RS08200	COG0642	Histidine kinase
AhaeAN54_RS08220	COG1309	transcriptional regulator
AhaeAN54_RS08240	COG2072	flavoprotein involved in K transport
AhaeAN54_RS08245	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AhaeAN54_RS08250	COG1560	Kdo2-lipid A biosynthetic process
AhaeAN54_RS08255	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
AhaeAN54_RS08260	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AhaeAN54_RS08265	COG4770	biotin carboxylase activity
AhaeAN54_RS08270	COG0501	Belongs to the peptidase M48B family
AhaeAN54_RS08280	COG1765	OsmC-like protein
AhaeAN54_RS08330	COG4133	protoheme IX ABC transporter activity
AhaeAN54_RS08360	COG0308	aminopeptidase N
AhaeAN54_RS08365	COG1760	l-serine dehydratase
AhaeAN54_RS08385	COG1714	RDD family
AhaeAN54_RS08395	COG0475	glutathione-regulated potassium exporter activity
AhaeAN54_RS08395	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AhaeAN54_RS08400	COG3135	benzoate transporter
AhaeAN54_RS08410	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AhaeAN54_RS08415	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS08435	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AhaeAN54_RS08465	COG0316	Belongs to the HesB IscA family
AhaeAN54_RS08470	COG0822	iron-sulfur transferase activity
AhaeAN54_RS08495	COG0776	regulation of translation
AhaeAN54_RS08500	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AhaeAN54_RS08520	COG2137	regulation of response to DNA damage stimulus
AhaeAN54_RS08530	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AhaeAN54_RS08535	COG1011	Hydrolase
AhaeAN54_RS08540	COG1218	3'(2'),5'-bisphosphate nucleotidase
AhaeAN54_RS08560	COG0268	Binds directly to 16S ribosomal RNA
AhaeAN54_RS08565	COG0702	epimerase
AhaeAN54_RS08570	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AhaeAN54_RS08590	COG0183	Belongs to the thiolase family
AhaeAN54_RS08605	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AhaeAN54_RS08645	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AhaeAN54_RS08650	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS08655	COG0424	maF-like protein
AhaeAN54_RS08710	COG1286	toxin biosynthetic process
AhaeAN54_RS08755	COG3634	alkyl hydroperoxide reductase activity
AhaeAN54_RS08810	COG0436	Aminotransferase
AhaeAN54_RS08815	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AhaeAN54_RS08820	COG0386	Belongs to the glutathione peroxidase family
AhaeAN54_RS08830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_RS08855	COG1522	sequence-specific DNA binding
AhaeAN54_RS08865	COG0436	Aminotransferase
AhaeAN54_RS08890	COG1253	flavin adenine dinucleotide binding
AhaeAN54_RS08895	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AhaeAN54_RS08905	COG0012	GTP binding
AhaeAN54_RS08910	COG2011	ABC-type metal ion transport system permease component
AhaeAN54_RS08915	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AhaeAN54_RS08920	COG1464	Belongs to the NlpA lipoprotein family
AhaeAN54_RS08950	COG2195	Cleaves the N-terminal amino acid of tripeptides
AhaeAN54_RS08960	COG3550	peptidyl-serine autophosphorylation
AhaeAN54_RS09010	COG2363	Small membrane protein
AhaeAN54_RS09030	COG0513	Belongs to the DEAD box helicase family
AhaeAN54_RS09040	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AhaeAN54_RS09055	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AhaeAN54_RS09065	COG1192	Involved in chromosome partitioning
AhaeAN54_RS09070	COG1475	DNA binding
AhaeAN54_RS09075	COG0811	peptide transport
AhaeAN54_RS09085	COG1132	(ABC) transporter
AhaeAN54_RS09090	COG1663	tetraacyldisaccharide 4'-kinase activity
AhaeAN54_RS09115	COG0084	hydrolase, TatD family'
AhaeAN54_RS09180	COG0776	regulation of translation
AhaeAN54_RS09195	COG2431	L-lysine efflux transmembrane transporter activity
AhaeAN54_RS09210	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AhaeAN54_RS09215	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AhaeAN54_RS09255	COG0024	Methionine aminopeptidase
AhaeAN54_RS09260	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS09270	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AhaeAN54_RS09275	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AhaeAN54_RS09285	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AhaeAN54_RS09285	COG0517	IMP dehydrogenase activity
AhaeAN54_RS09310	COG0552	protein localization to endoplasmic reticulum
AhaeAN54_RS09340	COG4890	Cyd operon protein YbgT
AhaeAN54_RS09345	COG1294	oxidase, subunit
AhaeAN54_RS09370	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AhaeAN54_RS09390	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AhaeAN54_RS09395	COG0569	domain protein
AhaeAN54_RS09400	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AhaeAN54_RS09405	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AhaeAN54_RS09440	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AhaeAN54_RS09450	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AhaeAN54_RS09455	COG0542	response to heat
AhaeAN54_RS09465	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AhaeAN54_RS09470	COG2267	carboxylic ester hydrolase activity
AhaeAN54_RS09480	COG1902	pentaerythritol trinitrate reductase activity
AhaeAN54_RS09480	COG0446	pyridine nucleotide-disulphide oxidoreductase
AhaeAN54_RS09515	COG0148	phosphopyruvate hydratase activity
AhaeAN54_RS09520	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AhaeAN54_RS09575	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AhaeAN54_RS09585	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AhaeAN54_RS09600	COG1802	Transcriptional regulator
AhaeAN54_RS09610	COG2207	Transcriptional regulator
AhaeAN54_RS09615	COG1063	alcohol dehydrogenase
AhaeAN54_RS09625	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AhaeAN54_RS09645	COG1944	ATP diphosphatase activity
AhaeAN54_RS09665	COG1522	sequence-specific DNA binding
AhaeAN54_RS09680	COG0439	Biotin carboxylase
AhaeAN54_RS09690	COG0864	Transcriptional regulator
AhaeAN54_RS09695	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_RS09710	COG1595	DNA-templated transcription, initiation
AhaeAN54_RS09780	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS09790	COG4770	biotin carboxylase activity
AhaeAN54_RS09795	COG1024	Enoyl-CoA hydratase
AhaeAN54_RS09800	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AhaeAN54_RS09805	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS09810	COG1309	transcriptional regulator
AhaeAN54_RS09815	COG0318	PFAM AMP-dependent synthetase and ligase
AhaeAN54_RS09830	COG2814	Major facilitator Superfamily
AhaeAN54_RS09850	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS09860	COG4774	siderophore transport
AhaeAN54_RS09895	COG2249	NAD(P)H dehydrogenase (quinone) activity
AhaeAN54_RS09905	COG3706	GGDEF domain
AhaeAN54_RS09925	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AhaeAN54_RS09945	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AhaeAN54_RS09990	COG0537	adenosine 5'-monophosphoramidase activity
AhaeAN54_RS10020	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AhaeAN54_RS10040	COG0730	response to heat
AhaeAN54_RS10045	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AhaeAN54_RS10055	COG4771	TonB-dependent receptor
AhaeAN54_RS10075	COG0406	alpha-ribazole phosphatase activity
AhaeAN54_RS10080	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AhaeAN54_RS10095	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AhaeAN54_RS10110	COG2814	Major facilitator Superfamily
AhaeAN54_RS10155	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS10160	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS10165	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AhaeAN54_RS10170	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_RS10175	COG2207	Transcriptional regulator
AhaeAN54_RS10180	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AhaeAN54_RS10215	COG0575	Belongs to the CDS family
AhaeAN54_RS10220	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AhaeAN54_RS10230	COG0528	UMP kinase activity
AhaeAN54_RS10240	COG3852	Histidine kinase
AhaeAN54_RS10245	COG2204	response regulator
AhaeAN54_RS10250	COG1309	transcriptional regulator
AhaeAN54_RS10300	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AhaeAN54_RS10320	COG0697	spore germination
AhaeAN54_RS10325	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AhaeAN54_RS10335	COG0303	'Molybdopterin
AhaeAN54_RS10340	COG0315	cyclic pyranopterin monophosphate synthase activity
AhaeAN54_RS10340	COG0521	Mo-molybdopterin cofactor biosynthetic process
AhaeAN54_RS10355	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AhaeAN54_RS10360	COG0243	molybdopterin cofactor binding
AhaeAN54_RS10375	COG0243	molybdopterin cofactor binding
AhaeAN54_RS10380	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_RS10385	COG2146	nitrite reductase [NAD(P)H] activity
AhaeAN54_RS10385	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AhaeAN54_RS10390	COG2223	nitrite transmembrane transporter activity
AhaeAN54_RS10400	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AhaeAN54_RS10400	COG1116	anion transmembrane transporter activity
AhaeAN54_RS10415	COG0439	Biotin carboxylase
AhaeAN54_RS10430	COG2814	Major facilitator Superfamily
AhaeAN54_RS10440	COG0069	glutamate synthase activity
AhaeAN54_RS10460	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AhaeAN54_RS10465	COG1454	alcohol dehydrogenase
AhaeAN54_RS10480	COG2850	peptidyl-arginine hydroxylation
AhaeAN54_RS10510	COG0640	Transcriptional regulator
AhaeAN54_RS10535	COG0668	transmembrane transport
AhaeAN54_RS10545	COG1132	(ABC) transporter
AhaeAN54_RS10565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AhaeAN54_RS10575	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AhaeAN54_RS10575	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AhaeAN54_RS10575	COG0506	proline dehydrogenase activity
AhaeAN54_RS10585	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AhaeAN54_RS10595	COG3698	Phosphodiester glycosidase
AhaeAN54_RS10610	COG3153	acetyltransferase
AhaeAN54_RS10615	COG2353	YceI-like domain
AhaeAN54_RS10635	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AhaeAN54_RS10640	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AhaeAN54_RS10655	COG3042	response to heat
AhaeAN54_RS10675	COG1278	Cold shock
AhaeAN54_RS10680	COG1278	Cold shock
AhaeAN54_RS10700	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AhaeAN54_RS10700	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AhaeAN54_RS10725	COG3539	Fimbrial protein
AhaeAN54_RS10750	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS10790	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AhaeAN54_RS10805	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS10810	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AhaeAN54_RS10835	COG3139	Protein of unknown function (DUF1315)
AhaeAN54_RS10840	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AhaeAN54_RS10845	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AhaeAN54_RS10855	COG0494	nUDIX hydrolase
AhaeAN54_RS10865	COG0642	Histidine kinase
AhaeAN54_RS10880	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AhaeAN54_RS10885	COG1720	tRNA m6t6A37 methyltransferase activity
AhaeAN54_RS10920	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS10925	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AhaeAN54_RS10935	COG2814	Major facilitator Superfamily
AhaeAN54_RS10940	COG4607	ABC-type enterochelin transport system periplasmic component
AhaeAN54_RS10945	COG4604	ABC transporter, ATP-binding protein
AhaeAN54_RS10950	COG4605	iron ion homeostasis
AhaeAN54_RS10955	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AhaeAN54_RS10965	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AhaeAN54_RS10975	COG0471	metal ion transport
AhaeAN54_RS11000	COG0729	surface antigen
AhaeAN54_RS11030	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AhaeAN54_RS11060	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AhaeAN54_RS11140	COG1131	(ABC) transporter
AhaeAN54_RS11145	COG0842	Transport permease protein
AhaeAN54_RS11160	COG0772	Belongs to the SEDS family
AhaeAN54_RS11165	COG2951	lytic endotransglycosylase activity
AhaeAN54_RS11190	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AhaeAN54_RS11220	COG1643	Atp-dependent helicase
AhaeAN54_RS11225	COG0450	alkyl hydroperoxide reductase
AhaeAN54_RS11235	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AhaeAN54_RS11255	COG3634	alkyl hydroperoxide reductase activity
AhaeAN54_RS11275	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AhaeAN54_RS11290	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AhaeAN54_RS11305	COG0531	amino acid
AhaeAN54_RS11310	COG4303	Ethanolamine ammonia lyase large subunit
AhaeAN54_RS11315	COG4302	ethanolamine ammonia-lyase activity
AhaeAN54_RS11325	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AhaeAN54_RS11325	COG0519	Catalyzes the synthesis of GMP from XMP
AhaeAN54_RS11340	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AhaeAN54_RS11350	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AhaeAN54_RS11360	COG2249	NAD(P)H dehydrogenase (quinone) activity
AhaeAN54_RS11370	COG0697	spore germination
AhaeAN54_RS11375	COG1923	regulation of RNA biosynthetic process
AhaeAN54_RS11385	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AhaeAN54_RS11390	COG0802	atpase or kinase
AhaeAN54_RS11420	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AhaeAN54_RS11425	COG5001	Diguanylate cyclase
AhaeAN54_RS11425	COG3300	MHYT domain
AhaeAN54_RS11445	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AhaeAN54_RS11450	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AhaeAN54_RS11455	COG1845	cytochrome c oxidase, subunit III
AhaeAN54_RS11460	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AhaeAN54_RS11490	COG0305	Participates in initiation and elongation during chromosome replication
AhaeAN54_RS11495	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AhaeAN54_RS11510	COG1305	Transglutaminase-like
AhaeAN54_RS11520	COG2308	Evidence 4 Homologs of previously reported genes of
AhaeAN54_RS11530	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AhaeAN54_RS11545	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AhaeAN54_RS11555	COG0582	viral genome integration into host DNA
AhaeAN54_RS11570	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AhaeAN54_RS11790	COG2357	RelA SpoT domain protein
AhaeAN54_RS11950	COG0527	aspartate kinase activity
AhaeAN54_RS11960	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AhaeAN54_RS11970	COG3038	cytochrome b561
AhaeAN54_RS11975	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AhaeAN54_RS11980	COG2252	PERMEase
AhaeAN54_RS12055	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AhaeAN54_RS12060	COG0138	bifunctional purine biosynthesis protein purh
AhaeAN54_RS12065	COG0151	Belongs to the GarS family
AhaeAN54_RS12070	COG1464	Belongs to the NlpA lipoprotein family
AhaeAN54_RS12075	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AhaeAN54_RS12080	COG2011	ABC-type metal ion transport system permease component
AhaeAN54_RS12095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AhaeAN54_RS12105	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
AhaeAN54_RS12110	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AhaeAN54_RS12115	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AhaeAN54_RS12140	COG0052	Belongs to the universal ribosomal protein uS2 family
AhaeAN54_RS12145	COG0024	Methionine aminopeptidase
AhaeAN54_RS12155	COG2223	nitrite transmembrane transporter activity
AhaeAN54_RS12165	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AhaeAN54_RS12170	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AhaeAN54_RS12175	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AhaeAN54_RS12220	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AhaeAN54_RS12225	COG3161	chorismate lyase activity
AhaeAN54_RS12230	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AhaeAN54_RS12235	COG2852	Protein conserved in bacteria
AhaeAN54_RS12250	COG0174	glutamine synthetase
AhaeAN54_RS12255	COG0512	Glutamine amidotransferase of anthranilate synthase
AhaeAN54_RS12260	COG1823	symporter activity
AhaeAN54_RS12265	COG3217	Mosc domain protein beta barrel domain protein
AhaeAN54_RS12265	COG0633	Ferredoxin
AhaeAN54_RS12290	COG0302	gtp cyclohydrolase
AhaeAN54_RS12310	COG3739	integral membrane protein
AhaeAN54_RS12335	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AhaeAN54_RS12350	COG4172	Belongs to the ABC transporter superfamily
AhaeAN54_RS12355	COG4239	(ABC) transporter, permease
AhaeAN54_RS12360	COG4174	ABC transporter (Permease)
AhaeAN54_RS12365	COG4166	transmembrane transport
AhaeAN54_RS12370	COG1388	LysM domain
AhaeAN54_RS12370	COG0741	lytic transglycosylase activity
AhaeAN54_RS12370	COG1388	LysM domain
AhaeAN54_RS12370	COG0741	lytic transglycosylase activity
AhaeAN54_RS12375	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AhaeAN54_RS12385	COG2816	NAD+ diphosphatase activity
AhaeAN54_RS12415	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS12420	COG1279	arginine transmembrane transporter activity
AhaeAN54_RS12440	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_RS12445	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_RS12450	COG0006	proline dipeptidase activity
AhaeAN54_RS12480	COG2217	Heavy metal translocating P-type atpase
AhaeAN54_RS12495	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AhaeAN54_RS12510	COG3384	dioxygenase
AhaeAN54_RS12520	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AhaeAN54_RS12560	COG2878	Part of a membrane complex involved in electron transport
AhaeAN54_RS12565	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AhaeAN54_RS12590	COG0768	penicillin binding
AhaeAN54_RS12595	COG0742	ribosomal rna small subunit methyltransferase
AhaeAN54_RS12620	COG0616	signal peptide processing
AhaeAN54_RS12625	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AhaeAN54_RS12635	COG0573	inorganic phosphate transmembrane transporter activity
AhaeAN54_RS12650	COG0076	glutamate decarboxylase activity
AhaeAN54_RS12655	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AhaeAN54_RS12665	COG1309	transcriptional regulator
AhaeAN54_RS12695	COG0783	Belongs to the Dps family
AhaeAN54_RS12705	COG0564	pseudouridine synthase activity
AhaeAN54_RS12720	COG0352	thiamine-phosphate diphosphorylase activity
AhaeAN54_RS12750	COG0612	Peptidase, M16
AhaeAN54_RS12755	COG0384	phenazine biosynthesis protein PhzF
AhaeAN54_RS12790	COG1686	Belongs to the peptidase S11 family
AhaeAN54_RS12795	COG1252	NADH dehydrogenase
AhaeAN54_RS12805	COG0415	Belongs to the DNA photolyase family
AhaeAN54_RS12825	COG1271	oxidase subunit
AhaeAN54_RS12830	COG1294	oxidase, subunit
AhaeAN54_RS12850	COG0705	Rhomboid family
AhaeAN54_RS12850	COG0457	Tetratricopeptide repeat
AhaeAN54_RS12860	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AhaeAN54_RS12865	COG4181	ATPase activity
AhaeAN54_RS12875	COG0456	acetyltransferase
AhaeAN54_RS12895	COG4771	TonB-dependent receptor
AhaeAN54_RS12915	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AhaeAN54_RS12940	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AhaeAN54_RS12945	COG1597	lipid kinase activity
AhaeAN54_RS12950	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
AhaeAN54_RS12990	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AhaeAN54_RS13000	COG2388	GCN5-related N-acetyl-transferase
AhaeAN54_RS13025	COG3152	Membrane
AhaeAN54_RS13090	COG4681	YaeQ
AhaeAN54_RS13095	COG0523	cobalamin synthesis protein
AhaeAN54_RS13105	COG1607	acyl-coa hydrolase
AhaeAN54_RS13120	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS13130	COG2814	Major facilitator Superfamily
AhaeAN54_RS13135	COG1024	Enoyl-CoA hydratase
AhaeAN54_RS13140	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_RS13150	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS13175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_RS13180	COG1414	Transcriptional regulator
AhaeAN54_RS13185	COG0281	malic enzyme
AhaeAN54_RS13190	COG0833	amino acid
AhaeAN54_RS13205	COG1012	belongs to the aldehyde dehydrogenase family
AhaeAN54_RS13215	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AhaeAN54_RS13220	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AhaeAN54_RS13230	COG1960	acyl-CoA dehydrogenase activity
AhaeAN54_RS13235	COG1454	alcohol dehydrogenase
AhaeAN54_RS13305	COG2814	Major facilitator Superfamily
AhaeAN54_RS13310	COG1566	PFAM secretion protein HlyD family protein
AhaeAN54_RS13315	COG2050	protein possibly involved in aromatic compounds catabolism
AhaeAN54_RS13325	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AhaeAN54_RS13330	COG1090	epimerase
AhaeAN54_RS13350	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AhaeAN54_RS13355	COG0420	3'-5' exonuclease activity
AhaeAN54_RS13385	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AhaeAN54_RS13390	COG2914	Belongs to the UPF0125 (RnfH) family
AhaeAN54_RS13405	COG0121	glutamine amidotransferase
AhaeAN54_RS13420	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AhaeAN54_RS13425	COG0756	dUTP diphosphatase activity
AhaeAN54_RS13430	COG0210	DNA helicase
AhaeAN54_RS13435	COG2885	chlorophyll binding
AhaeAN54_RS13440	COG0204	Acyl-transferase
AhaeAN54_RS13450	COG0850	regulation of cytokinetic process
AhaeAN54_RS13455	COG2894	cell division
AhaeAN54_RS13460	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AhaeAN54_RS13470	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_RS13475	COG1674	ftsk spoiiie
AhaeAN54_RS13475	COG0531	amino acid
AhaeAN54_RS13480	COG0492	ferredoxin-NADP+ reductase activity
AhaeAN54_RS13485	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AhaeAN54_RS13495	COG0456	acetyltransferase
AhaeAN54_RS13510	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AhaeAN54_RS13520	COG0049	tRNA binding
AhaeAN54_RS13540	COG1981	membrane
AhaeAN54_RS13570	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AhaeAN54_RS13570	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AhaeAN54_RS13595	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AhaeAN54_RS13605	COG0582	viral genome integration into host DNA
AhaeAN54_RS13680	COG2132	Multicopper oxidase
AhaeAN54_RS13695	COG2205	protein histidine kinase activity
AhaeAN54_RS13700	COG2217	Heavy metal translocating P-type atpase
AhaeAN54_RS13820	COG0564	pseudouridine synthase activity
AhaeAN54_RS13830	COG0358	DNA primase activity
AhaeAN54_RS13865	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AhaeAN54_RS13880	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AhaeAN54_RS13915	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AhaeAN54_RS13925	COG0351	phosphomethylpyrimidine kinase
AhaeAN54_RS13925	COG0352	thiamine-phosphate diphosphorylase activity
AhaeAN54_RS13925	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AhaeAN54_RS13945	COG1652	LysM domain
AhaeAN54_RS13975	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AhaeAN54_RS13980	COG1399	metal-binding, possibly nucleic acid-binding protein
AhaeAN54_RS13985	COG3101	peptidyl-lysine hydroxylation
AhaeAN54_RS13990	COG0009	L-threonylcarbamoyladenylate synthase
AhaeAN54_RS14010	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
AhaeAN54_RS14015	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
AhaeAN54_RS14050	COG4166	transmembrane transport
AhaeAN54_RS14095	COG4106	trans-aconitate 2-methyltransferase activity
AhaeAN54_RS14115	COG0596	Alpha beta hydrolase
AhaeAN54_RS14125	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AhaeAN54_RS14140	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AhaeAN54_RS14150	COG1196	nuclear chromosome segregation
AhaeAN54_RS14160	COG0730	response to heat
AhaeAN54_RS14185	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AhaeAN54_RS14245	COG0489	protein tyrosine kinase activity
AhaeAN54_RS14265	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AhaeAN54_RS14265	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AhaeAN54_RS14305	COG2515	1-aminocyclopropane-1-carboxylate deaminase
AhaeAN54_RS14310	COG2081	HI0933 family
AhaeAN54_RS14315	COG0668	transmembrane transport
AhaeAN54_RS14330	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AhaeAN54_RS14335	COG0583	DNA-binding transcription factor activity
AhaeAN54_RS14370	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_RS14375	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AhaeAN54_RS14390	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_RS14405	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
AhaeAN54_RS14415	COG0649	NAD binding
AhaeAN54_RS14415	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_RS14425	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
AhaeAN54_RS14450	COG2205	protein histidine kinase activity
AhaeAN54_RS14455	COG0745	RESPONSE REGULATOR receiver
AhaeAN54_RS14470	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AhaeAN54_RS14500	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AhaeAN54_RS14505	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
AhaeAN54_RS14510	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AhaeAN54_RS14515	COG2076	Multidrug Resistance protein
AhaeAN54_RS14535	COG2132	Multicopper oxidase
AhaeAN54_RS14545	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AhaeAN54_RS14570	COG1968	undecaprenyl-diphosphatase activity
AhaeAN54_RS14575	COG1214	PFAM Peptidase M22, glycoprotease
AhaeAN54_RS14585	COG0494	nUDIX hydrolase
AhaeAN54_RS14625	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AhaeAN54_RS14635	COG1595	DNA-templated transcription, initiation
AhaeAN54_RS14640	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AhaeAN54_RS14645	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AhaeAN54_RS14710	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AhaeAN54_RS14720	COG1764	response to oxidative stress
AhaeAN54_RS14745	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AhaeAN54_RS14745	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AhaeAN54_RS14760	COG0037	tRNA processing
AhaeAN54_RS14770	COG0248	Ppx GppA phosphatase
AhaeAN54_RS14795	COG0072	phenylalanine-tRNA ligase activity
AhaeAN54_RS14825	COG1238	metal cluster binding
AhaeAN54_RS14840	COG0625	glutathione transferase activity
AhaeAN54_RS14860	COG0318	PFAM AMP-dependent synthetase and ligase
AhaeAN54_RS14865	COG3028	Belongs to the UPF0307 family
AhaeAN54_RS14890	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AhaeAN54_RS14895	COG0617	tRNA 3'-terminal CCA addition
AhaeAN54_RS14900	COG1555	photosystem II stabilization
AhaeAN54_RS14905	COG3956	TIGRFAM MazG family protein
AhaeAN54_RS14945	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AhaeAN54_RS14965	COG0784	Response regulator, receiver
AhaeAN54_RS14965	COG2205	protein histidine kinase activity
AhaeAN54_RS14965	COG5002	protein histidine kinase activity
AhaeAN54_RS14975	COG2084	Dehydrogenase
AhaeAN54_RS14980	COG3622	Belongs to the hyi family
AhaeAN54_RS15025	COG2814	Major facilitator Superfamily
AhaeAN54_RS15030	COG5285	phytanoyl-CoA dioxygenase
AhaeAN54_RS15035	COG1917	Cupin 2, conserved barrel domain protein
AhaeAN54_RS15045	COG0456	acetyltransferase
AhaeAN54_RS15055	COG0431	NADPH-dependent FMN reductase
AhaeAN54_RS15060	COG0798	PFAM Bile acid sodium symporter
AhaeAN54_RS15070	COG0640	Transcriptional regulator
AhaeAN54_RS15090	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AhaeAN54_RS15110	COG0732	type I restriction modification DNA specificity domain
AhaeAN54_RS15120	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AhaeAN54_RS15220	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AhaeAN54_RS15230	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AhaeAN54_RS15245	COG0084	hydrolase, TatD family'
AhaeAN54_RS15260	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AhaeAN54_RS15340	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AhaeAN54_RS15345	COG0440	acetolactate synthase activity
AhaeAN54_RS15350	COG0028	Belongs to the TPP enzyme family
AhaeAN54_RS15370	COG1466	dna polymerase III delta subunit
AhaeAN54_RS15375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AhaeAN54_RS15380	COG1136	(ABC) transporter
AhaeAN54_RS15380	COG0577	efflux transmembrane transporter activity
AhaeAN54_RS15385	COG1538	Outer membrane efflux protein
AhaeAN54_RS15400	COG2826	transposase and inactivated derivatives, IS30 family
AhaeAN54_RS15425	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AhaeAN54_RS15430	COG1162	GTPase activity
AhaeAN54_RS15440	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AhaeAN54_RS15475	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AhaeAN54_RS15485	COG3781	membrane
AhaeAN54_RS15520	COG1666	GTP binding
AhaeAN54_RS15535	COG1956	GAF domain-containing protein
AhaeAN54_RS15540	COG1607	acyl-coa hydrolase
AhaeAN54_RS15595	COG1183	phosphatidylcholine synthase activity
AhaeAN54_RS15600	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AhaeAN54_RS15630	COG0739	heme binding
AhaeAN54_RS15630	COG0741	lytic transglycosylase activity
AhaeAN54_RS15630	COG1196	nuclear chromosome segregation
AhaeAN54_RS15640	COG1702	phosphate starvation-inducible protein PhoH
AhaeAN54_RS15655	COG4773	Receptor
AhaeAN54_RS15720	COG0788	formyltetrahydrofolate deformylase activity
AhaeAN54_RS15745	COG4651	solute:proton antiporter activity
AhaeAN54_RS15745	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AhaeAN54_RS15765	COG0210	DNA helicase
AhaeAN54_RS15790	COG1733	regulation of RNA biosynthetic process
AhaeAN54_RS15800	COG2900	Belongs to the SlyX family
AhaeAN54_RS15805	COG0488	(ABC) transporter
AhaeAN54_RS15815	COG1560	Kdo2-lipid A biosynthetic process
AhaeAN54_RS15870	COG0473	3-isopropylmalate dehydrogenase activity
AhaeAN54_RS15905	COG0494	nUDIX hydrolase
AhaeAN54_RS15940	COG0625	glutathione transferase activity
AhaeAN54_RS15955	COG0564	pseudouridine synthase activity
AhaeAN54_RS15965	COG1530	ribonuclease E activity
AhaeAN54_RS15970	COG0318	PFAM AMP-dependent synthetase and ligase
AhaeAN54_RS15980	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AhaeAN54_RS15990	COG0534	Mate efflux family protein
AhaeAN54_RS15995	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AhaeAN54_RS16020	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AhaeAN54_RS16035	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
AhaeAN54_RS16035	COG0493	'glutamate synthase
AhaeAN54_RS16045	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AhaeAN54_RS16095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AhaeAN54_RS16110	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AhaeAN54_RS16120	COG0644	oxidoreductase
AhaeAN54_RS16120	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
AhaeAN54_RS16125	COG0425	Belongs to the sulfur carrier protein TusA family
AhaeAN54_RS16130	COG4535	Mg2 and Co2 transporter CorC
AhaeAN54_RS16135	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AhaeAN54_RS16165	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AhaeAN54_RS16175	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AhaeAN54_RS16190	COG0789	Transcriptional regulator
AhaeAN54_RS16195	COG0598	Magnesium transport protein CorA
AhaeAN54_RS16200	COG1185	polyribonucleotide nucleotidyltransferase activity
AhaeAN54_RS16205	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AhaeAN54_RS16210	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AhaeAN54_RS16215	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AhaeAN54_RS16220	COG1074	ATP-dependent DNA helicase activity
AhaeAN54_RS16225	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AhaeAN54_RS16285	COG1116	anion transmembrane transporter activity
AhaeAN54_RS16290	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AhaeAN54_RS16300	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AhaeAN54_RS16315	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AhaeAN54_RS16315	COG2111	Na H antiporter
AhaeAN54_RS16320	COG1006	Multisubunit Na H antiporter MnhC subunit
AhaeAN54_RS16325	COG0651	ATP synthesis coupled electron transport
AhaeAN54_RS16330	COG1863	multisubunit Na H antiporter MnhE subunit
AhaeAN54_RS16335	COG2212	antiporter activity
AhaeAN54_RS16340	COG1320	monovalent cation:proton antiporter activity
AhaeAN54_RS16360	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AhaeAN54_RS16370	COG0195	Participates in both transcription termination and antitermination
AhaeAN54_RS16415	COG0237	dephospho-CoA kinase activity
AhaeAN54_RS16430	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AhaeAN54_RS16440	COG0497	DNA recombination
AhaeAN54_RS16450	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AhaeAN54_RS16475	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AhaeAN54_RS16530	COG1132	(ABC) transporter
AhaeAN54_RS16540	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AhaeAN54_RS16555	COG0326	Molecular chaperone. Has ATPase activity
AhaeAN54_RS16565	COG2056	Na+-H+ antiporter family
AhaeAN54_RS16615	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AhaeAN54_RS16625	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AhaeAN54_RS16635	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AhaeAN54_RS16665	COG0546	phosphoglycolate phosphatase activity
AhaeAN54_RS16715	COG0181	hydroxymethylbilane synthase activity
AhaeAN54_RS16725	COG3275	phosphorelay sensor kinase activity
AhaeAN54_RS16750	COG0494	nUDIX hydrolase
AhaeAN54_RS16760	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AhaeAN54_RS16765	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AhaeAN54_RS16770	COG0772	Belongs to the SEDS family
AhaeAN54_RS16795	COG4974	Belongs to the 'phage' integrase family
AhaeAN54_RS16800	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AhaeAN54_RS16810	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AhaeAN54_RS16815	COG1686	Belongs to the peptidase S11 family
AhaeAN54_RS16820	COG2197	response regulator
AhaeAN54_RS16835	COG0793	Belongs to the peptidase S41A family
AhaeAN54_RS16840	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AhaeAN54_RS16845	COG0795	lipopolysaccharide-transporting ATPase activity
AhaeAN54_RS16850	COG0795	lipopolysaccharide-transporting ATPase activity
AhaeAN54_RS16890	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AhaeAN54_RS16890	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AhaeAN54_RS16895	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AhaeAN54_RS16900	COG0004	ammonium transporteR
AhaeAN54_RS16905	COG0347	Belongs to the P(II) protein family
AhaeAN54_RS16935	COG0659	secondary active sulfate transmembrane transporter activity
AhaeAN54_RS16940	COG0589	response to stress
AhaeAN54_RS16950	COG0640	Transcriptional regulator
AhaeAN54_RS16960	COG0798	PFAM Bile acid sodium symporter
AhaeAN54_RS16965	COG0431	NADPH-dependent FMN reductase
AhaeAN54_RS16970	COG0492	ferredoxin-NADP+ reductase activity
AhaeAN54_RS16975	COG2072	flavoprotein involved in K transport
AhaeAN54_RS17005	COG0606	chelatase, subunit chli
AhaeAN54_RS17040	COG0318	PFAM AMP-dependent synthetase and ligase
AhaeAN54_RS17055	COG2860	membrane
AhaeAN54_RS17065	COG1253	flavin adenine dinucleotide binding
AhaeAN54_RS17085	COG2814	Major facilitator Superfamily
AhaeAN54_RS17095	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AhaeAN54_RS17120	COG2814	Major facilitator Superfamily
AhaeAN54_RS17130	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AhaeAN54_RS17135	COG1283	sodium-dependent phosphate transmembrane transporter activity
AhaeAN54_RS17165	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AhaeAN54_RS17185	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AhaeAN54_RS17190	COG3162	membrane
AhaeAN54_RS17195	COG2205	protein histidine kinase activity
AhaeAN54_RS17270	COG2390	Transcriptional regulator
AhaeAN54_RS17270	COG4584	PFAM Integrase catalytic
AhaeAN54_RS17275	COG1484	DNA-dependent DNA replication
AhaeAN54_RS17300	COG1652	LysM domain
AhaeAN54_RS17305	COG0758	DNA mediated transformation
AhaeAN54_RS17320	COG1309	transcriptional regulator
AhaeAN54_RS17325	COG2814	Major facilitator Superfamily
AhaeAN54_RS17335	COG0386	Belongs to the glutathione peroxidase family
AhaeAN54_RS17370	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AhaeAN54_RS17380	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AhaeAN54_RS17420	COG1121	(ABC) transporter
AhaeAN54_RS17425	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AhaeAN54_RS17435	COG1280	lysine exporter protein (LysE YggA)
AhaeAN54_RS17440	COG2837	iron assimilation
AhaeAN54_RS17475	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AhaeAN54_RS17495	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AhaeAN54_RS17495	COG0519	Catalyzes the synthesis of GMP from XMP
AhaeAN54_RS17500	COG4399	Belongs to the UPF0754 family
AhaeAN54_RS17510	COG2259	Doxx family
AhaeAN54_RS17515	COG0586	Pfam SNARE associated Golgi protein
AhaeAN54_RS17530	COG1192	Involved in chromosome partitioning
AhaeAN54_RS17540	COG0271	Belongs to the BolA IbaG family
AhaeAN54_RS17575	COG3756	Protein conserved in bacteria
AhaeAN54_RS17585	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AhaeAN54_RS17795	COG1252	NADH dehydrogenase
AhaeAN54_RS17800	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
AhaeAN54_RS17850	COG0154	amidase activity
AhaeAN54_RS17880	COG2337	Toxic component of a toxin-antitoxin (TA) module
AhaeAN54_RS17885	COG2336	PFAM SpoVT AbrB
AhaeAN54_RS17940	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AhaeAN54_RS18005	COG1192	Involved in chromosome partitioning
AhaeAN54_RS18065	COG0739	heme binding
AhaeAN54_RS18065	COG1196	nuclear chromosome segregation
AhaeAN54_RS18065	COG0741	lytic transglycosylase activity
AhaeAN54_RS18080	COG0741	lytic transglycosylase activity
AhaeAN54_RS18080	COG1196	nuclear chromosome segregation
AhaeAN54_RS18080	COG0739	heme binding
AhaeAN54_RS18105	COG1525	nuclease
AhaeAN54_RS18150	COG1324	tolerance protein
AhaeAN54_RS18155	COG0673	inositol 2-dehydrogenase activity