C3F22_RS00010	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C3F22_RS00080	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS00140	SM00822	C3F22_RS00140
C3F22_RS00150	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS00155	SM00671	Sel1-like repeats.
C3F22_RS00265	SM00965	Secretin and TonB N terminus short domain
C3F22_RS00350	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS00455	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3F22_RS00455	SM00954	Region found in RelA / SpoT proteins
C3F22_RS00460	SM01409	C3F22_RS00460
C3F22_RS00465	SM00072	Guanylate kinase homologues.
C3F22_RS00690	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS00700	SM00357	Cold shock protein domain
C3F22_RS00725	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS00735	SM00861	Transketolase, pyrimidine binding domain
C3F22_RS00745	SM00487	DEAD-like helicases superfamily
C3F22_RS00745	SM00490	helicase superfamily c-terminal domain
C3F22_RS00750	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS00795	SM00487	DEAD-like helicases superfamily
C3F22_RS00795	SM00490	helicase superfamily c-terminal domain
C3F22_RS00810	SM00563	Phosphate acyltransferases
C3F22_RS00880	SM01403	C3F22_RS00880
C3F22_RS00900	SM01382	C3F22_RS00900
C3F22_RS00900	SM01383	C3F22_RS00900
C3F22_RS00915	SM00322	K homology RNA-binding domain
C3F22_RS00935	SM01374	C3F22_RS00935
C3F22_RS00940	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
C3F22_RS01005	SM00363	S4 RNA-binding domain
C3F22_RS01005	SM01390	C3F22_RS01005
C3F22_RS01010	SM00662	RNA polymerases D
C3F22_RS01080	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS01080	SM00955	C3F22_RS01080
C3F22_RS01200	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS01240	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
C3F22_RS01335	SM00450	Rhodanese Homology Domain
C3F22_RS01360	SM00481	DNA polymerase alpha chain like domain
C3F22_RS01405	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
C3F22_RS01405	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
C3F22_RS01440	SM00073	Histidine Phosphotransfer domain
C3F22_RS01440	SM00387	Histidine kinase-like ATPases
C3F22_RS01440	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS01440	SM00448	cheY-homologous receiver domain
C3F22_RS01460	SM00954	Region found in RelA / SpoT proteins
C3F22_RS01485	SM01323	C3F22_RS01485
C3F22_RS01545	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C3F22_RS01615	SM00873	B3/4 domain
C3F22_RS01615	SM00874	tRNA synthetase B5 domain
C3F22_RS01615	SM00896	Ferredoxin-fold anticodon binding domain
C3F22_RS01620	SM00411	bacterial (prokaryotic) histone like domain
C3F22_RS01630	SM00357	Cold shock protein domain
C3F22_RS01630	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS01630	SM00959	Rho termination factor, N-terminal domain
C3F22_RS01650	SM00977	TilS substrate C-terminal domain
C3F22_RS01670	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
C3F22_RS01670	SM00474	3'-5' exonuclease
C3F22_RS01670	SM00475	5'-3' exonuclease
C3F22_RS01670	SM00482	DNA polymerase A domain
C3F22_RS01690	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS01710	SM00331	Sigma factor PP2C-like phosphatases
C3F22_RS01800	SM00650	Ribosomal RNA adenine dimethylases
C3F22_RS01840	SM00563	Phosphate acyltransferases
C3F22_RS01845	SM00155	Phospholipase D. Active site motifs.
C3F22_RS01895	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS01955	SM00838	Elongation factor G C-terminus
C3F22_RS01970	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
C3F22_RS01970	SM01232	C3F22_RS01970
C3F22_RS01990	SM00671	Sel1-like repeats.
C3F22_RS02140	SM01006	Siderophore biosynthesis protein domain
C3F22_RS02190	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS02230	SM00448	cheY-homologous receiver domain
C3F22_RS02230	SM00862	Transcriptional regulatory protein, C terminal
C3F22_RS02235	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3F22_RS02235	SM00387	Histidine kinase-like ATPases
C3F22_RS02235	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS02265	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
C3F22_RS02270	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C3F22_RS02270	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
C3F22_RS02315	SM00357	Cold shock protein domain
C3F22_RS02390	SM00849	Metallo-beta-lactamase superfamily
C3F22_RS02515	SM00448	cheY-homologous receiver domain
C3F22_RS02520	SM00448	cheY-homologous receiver domain
C3F22_RS02525	SM00260	Two component signalling adaptor domain
C3F22_RS02530	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C3F22_RS02535	SM00073	Histidine Phosphotransfer domain
C3F22_RS02535	SM00260	Two component signalling adaptor domain
C3F22_RS02535	SM00387	Histidine kinase-like ATPases
C3F22_RS02535	SM00448	cheY-homologous receiver domain
C3F22_RS02535	SM01231	C3F22_RS02535
C3F22_RS02710	SM01322	C3F22_RS02710
C3F22_RS02725	SM00267	diguanylate cyclase
C3F22_RS02790	SM00014	Acid phosphatase homologues
C3F22_RS02925	SM00450	Rhodanese Homology Domain
C3F22_RS02970	SM01400	C3F22_RS02970
C3F22_RS03005	SM00028	Tetratricopeptide repeats
C3F22_RS03015	SM00400	zinc finger
C3F22_RS03015	SM00493	C3F22_RS03015
C3F22_RS03090	SM00851	MGS-like domain
C3F22_RS03090	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
C3F22_RS03095	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
C3F22_RS03115	SM01103	C3F22_RS03115
C3F22_RS03125	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS03170	SM01091	Transporter associated domain
C3F22_RS03200	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3F22_RS03200	SM00924	MgtE intracellular N domain
C3F22_RS03305	SM00919	Malic enzyme, NAD binding domain
C3F22_RS03305	SM01274	C3F22_RS03305
C3F22_RS03310	SM00052	Putative diguanylate phosphodiesterase
C3F22_RS03310	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C3F22_RS03310	SM00091	PAS domain
C3F22_RS03310	SM00267	diguanylate cyclase
C3F22_RS03325	SM00996	S-adenosyl-L-homocysteine hydrolase
C3F22_RS03325	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
C3F22_RS03330	SM00671	Sel1-like repeats.
C3F22_RS03335	SM00978	C3F22_RS03335
C3F22_RS03340	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS03395	SM00344	helix_turn_helix ASNC type
C3F22_RS03405	SM00893	Electron transfer flavoprotein domain
C3F22_RS03410	SM00893	Electron transfer flavoprotein domain
C3F22_RS03420	SM00434	DNA Topoisomerase IV
C3F22_RS03480	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS03605	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS03610	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C3F22_RS03615	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3F22_RS03625	SM01211	C3F22_RS03625
C3F22_RS03700	SM00867	YceI-like domain 
C3F22_RS03755	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS03815	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3F22_RS03825	SM00838	Elongation factor G C-terminus
C3F22_RS03840	SM00358	Double-stranded RNA binding motif
C3F22_RS03840	SM00535	Ribonuclease III family
C3F22_RS03950	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS03980	SM00479	C3F22_RS03980
C3F22_RS04045	SM00422	helix_turn_helix, mercury resistance
C3F22_RS04115	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS04125	SM00448	cheY-homologous receiver domain
C3F22_RS04125	SM00862	Transcriptional regulatory protein, C terminal
C3F22_RS04130	SM00387	Histidine kinase-like ATPases
C3F22_RS04130	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS04195	SM00830	Chorismate mutase type II
C3F22_RS04270	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C3F22_RS04280	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C3F22_RS04310	SM00788	Adenylosuccinate synthetase
C3F22_RS04355	SM00095	Transthyretin
C3F22_RS04420	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3F22_RS04465	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS04500	SM00344	helix_turn_helix ASNC type
C3F22_RS04510	SM00563	Phosphate acyltransferases
C3F22_RS04540	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS04670	SM00487	DEAD-like helicases superfamily
C3F22_RS04675	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS04770	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS04770	SM00876	Biotin and Thiamin Synthesis associated domain
C3F22_RS04850	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS04850	SM00487	DEAD-like helicases superfamily
C3F22_RS04850	SM00490	helicase superfamily c-terminal domain
C3F22_RS04850	SM00847	Helicase associated domain (HA2)  Add an annotation
C3F22_RS04860	SM00563	Phosphate acyltransferases
C3F22_RS04870	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS04880	SM00363	S4 RNA-binding domain
C3F22_RS04905	SM00853	MutL C terminal dimerisation domain
C3F22_RS04905	SM01340	C3F22_RS04905
C3F22_RS04950	SM00470	ParB-like nuclease domain
C3F22_RS04965	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS05025	SM00986	Uracil DNA glycosylase superfamily
C3F22_RS05025	SM00987	UreE urease accessory protein, C-terminal domain 
C3F22_RS05050	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS05055	SM00411	bacterial (prokaryotic) histone like domain
C3F22_RS05065	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
C3F22_RS05085	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS05110	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS05125	SM00347	helix_turn_helix multiple antibiotic resistance protein
C3F22_RS05130	SM01091	Transporter associated domain
C3F22_RS05210	SM00822	C3F22_RS05210
C3F22_RS05230	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS05245	SM00226	Low molecular weight phosphatase family
C3F22_RS05285	SM00460	Transglutaminase/protease-like homologues
C3F22_RS05295	SM01034	Sensors of blue-light using FAD
C3F22_RS05300	SM01005	Alanine racemase, C-terminal domain
C3F22_RS05410	SM00937	C3F22_RS05410
C3F22_RS05425	SM00062	Bacterial periplasmic substrate-binding proteins
C3F22_RS05435	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS05440	SM00822	C3F22_RS05440
C3F22_RS05475	SM00905	Dihydroneopterin aldolase
C3F22_RS05485	SM00384	DNA binding domain with preference for A/T rich regions
C3F22_RS05640	SM01192	C3F22_RS05640
C3F22_RS05640	SM01193	C3F22_RS05640
C3F22_RS05700	SM01324	C3F22_RS05700
C3F22_RS05725	SM00493	C3F22_RS05725
C3F22_RS05730	SM00341	Helicase and RNase D C-terminal
C3F22_RS05730	SM00474	3'-5' exonuclease
C3F22_RS05745	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS05760	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3F22_RS05800	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS05800	SM00962	SRP54-type protein, GTPase domain
C3F22_RS05800	SM00963	SRP54-type protein, helical bundle domain
C3F22_RS05955	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS05975	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS05985	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS06005	SM00347	helix_turn_helix multiple antibiotic resistance protein
C3F22_RS06025	SM00318	Staphylococcal nuclease homologues
C3F22_RS06050	SM00855	Phosphoglycerate mutase family
C3F22_RS06085	SM00155	Phospholipase D. Active site motifs.
C3F22_RS06090	SM00829	Enoylreductase
C3F22_RS06125	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS06130	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS06180	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3F22_RS06195	SM00422	helix_turn_helix, mercury resistance
C3F22_RS06220	SM00849	Metallo-beta-lactamase superfamily
C3F22_RS06270	SM00882	Coenzyme A transferase
C3F22_RS06275	SM00882	Coenzyme A transferase
C3F22_RS06315	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
C3F22_RS06335	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3F22_RS06380	SM01012	C3F22_RS06380
C3F22_RS06435	SM00346	helix_turn_helix isocitrate lyase regulation
C3F22_RS06455	SM00882	Coenzyme A transferase
C3F22_RS06460	SM00882	Coenzyme A transferase
C3F22_RS06505	SM01007	Class II Aldolase and Adducin N-terminal domain
C3F22_RS06575	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3F22_RS06595	SM00849	Metallo-beta-lactamase superfamily
C3F22_RS06640	SM01116	C3F22_RS06640
C3F22_RS06650	SM00220	Serine/Threonine protein kinases, catalytic domain
C3F22_RS06650	SM00331	Sigma factor PP2C-like phosphatases
C3F22_RS06650	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C3F22_RS06730	SM01034	Sensors of blue-light using FAD
C3F22_RS06760	SM00564	beta-propeller repeat
C3F22_RS06800	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS06860	SM00095	Transthyretin
C3F22_RS06925	SM00988	UreE urease accessory protein, N-terminal domain
C3F22_RS06935	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS07030	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS07030	SM01086	C-terminal, D2-small domain, of ClpB protein
C3F22_RS07145	SM00878	Biotin carboxylase C-terminal domain
C3F22_RS07155	SM00267	diguanylate cyclase
C3F22_RS07195	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS07275	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS07275	SM01086	C-terminal, D2-small domain, of ClpB protein
C3F22_RS07290	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C3F22_RS07325	SM01264	C3F22_RS07325
C3F22_RS07370	SM00411	bacterial (prokaryotic) histone like domain
C3F22_RS07405	SM00271	DnaJ molecular chaperone homology domain
C3F22_RS07420	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
C3F22_RS07430	SM00487	DEAD-like helicases superfamily
C3F22_RS07430	SM00490	helicase superfamily c-terminal domain
C3F22_RS07430	SM00982	C3F22_RS07430
C3F22_RS07430	SM01058	CarD-like/TRCF domain
C3F22_RS07450	SM00344	helix_turn_helix ASNC type
C3F22_RS07560	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
C3F22_RS07565	SM00387	Histidine kinase-like ATPases
C3F22_RS07570	SM00421	helix_turn_helix, Lux Regulon
C3F22_RS07570	SM00448	cheY-homologous receiver domain
C3F22_RS07610	SM00363	S4 RNA-binding domain
C3F22_RS07615	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS07655	SM00935	Outer membrane protein (OmpH-like)
C3F22_RS07665	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3F22_RS07695	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS07700	SM00091	PAS domain
C3F22_RS07700	SM00387	Histidine kinase-like ATPases
C3F22_RS07700	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS07705	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS07705	SM00448	cheY-homologous receiver domain
C3F22_RS07715	SM01228	C3F22_RS07715
C3F22_RS07755	SM00798	AICARFT/IMPCHase bienzyme
C3F22_RS07755	SM00851	MGS-like domain
C3F22_RS07760	SM01209	C3F22_RS07760
C3F22_RS07760	SM01210	C3F22_RS07760
C3F22_RS07780	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS07780	SM00930	C3F22_RS07780
C3F22_RS07790	SM00481	DNA polymerase alpha chain like domain
C3F22_RS07815	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
C3F22_RS07815	SM00534	ATPase domain of DNA mismatch repair MUTS family
C3F22_RS07885	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS07905	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3F22_RS07915	SM00840	C3F22_RS07915
C3F22_RS07950	SM00867	YceI-like domain 
C3F22_RS07965	SM00861	Transketolase, pyrimidine binding domain
C3F22_RS08055	SM00487	DEAD-like helicases superfamily
C3F22_RS08055	SM00490	helicase superfamily c-terminal domain
C3F22_RS08065	SM00823	Phosphopantetheine attachment site
C3F22_RS08095	SM01118	C3F22_RS08095
C3F22_RS08100	SM00880	C3F22_RS08100
C3F22_RS08100	SM01118	C3F22_RS08100
C3F22_RS08145	SM00903	Flavin reductase like domain
C3F22_RS08150	SM00849	Metallo-beta-lactamase superfamily
C3F22_RS08200	SM00220	Serine/Threonine protein kinases, catalytic domain
C3F22_RS08295	SM00855	Phosphoglycerate mutase family
C3F22_RS08315	SM00487	DEAD-like helicases superfamily
C3F22_RS08315	SM00490	helicase superfamily c-terminal domain
C3F22_RS08320	SM00357	Cold shock protein domain
C3F22_RS08420	SM00878	Biotin carboxylase C-terminal domain
C3F22_RS08430	SM00882	Coenzyme A transferase
C3F22_RS08435	SM00882	Coenzyme A transferase
C3F22_RS08470	SM00981	C3F22_RS08470
C3F22_RS08475	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS08475	SM01086	C-terminal, D2-small domain, of ClpB protein
C3F22_RS08490	SM00100	Cyclic nucleotide-monophosphate binding domain
C3F22_RS08490	SM00419	helix_turn_helix, cAMP Regulatory protein
C3F22_RS08515	SM00460	Transglutaminase/protease-like homologues
C3F22_RS08540	SM00841	Elongation factor P, C-terminal
C3F22_RS08540	SM01185	C3F22_RS08540
C3F22_RS08555	SM00052	Putative diguanylate phosphodiesterase
C3F22_RS08600	SM00257	Lysin motif
C3F22_RS08620	SM00936	Penicillin-binding protein 5, C-terminal domain 
C3F22_RS08650	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS08710	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS08740	SM00344	helix_turn_helix ASNC type
C3F22_RS08770	SM00014	Acid phosphatase homologues
C3F22_RS08775	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
C3F22_RS08800	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C3F22_RS08820	SM00487	DEAD-like helicases superfamily
C3F22_RS08820	SM00490	helicase superfamily c-terminal domain
C3F22_RS08875	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS08900	SM00903	Flavin reductase like domain
C3F22_RS08930	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3F22_RS08995	SM01230	C3F22_RS08995
C3F22_RS09025	SM00463	Small MutS-related domain
C3F22_RS09045	SM00267	diguanylate cyclase
C3F22_RS09120	SM00357	Cold shock protein domain
C3F22_RS09125	SM00919	Malic enzyme, NAD binding domain
C3F22_RS09125	SM01274	C3F22_RS09125
C3F22_RS09165	SM00267	diguanylate cyclase
C3F22_RS09170	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS09180	SM00098	Alkaline phosphatase homologues
C3F22_RS09185	SM00098	Alkaline phosphatase homologues
C3F22_RS09220	SM00267	diguanylate cyclase
C3F22_RS09230	SM00479	C3F22_RS09230
C3F22_RS09280	SM01236	C3F22_RS09280
C3F22_RS09305	SM00257	Lysin motif
C3F22_RS09310	SM00479	C3F22_RS09310
C3F22_RS09365	SM01034	Sensors of blue-light using FAD
C3F22_RS09395	SM01011	Aminopeptidase P, N-terminal domain
C3F22_RS09425	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS09425	SM00464	Found in ATP-dependent protease La (LON)
C3F22_RS09450	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
C3F22_RS09460	SM00478	endonuclease III
C3F22_RS09515	SM00563	Phosphate acyltransferases
C3F22_RS09525	SM00421	helix_turn_helix, Lux Regulon
C3F22_RS09545	SM00883	Chaperonin 10 Kd subunit
C3F22_RS09555	SM00046	Diacylglycerol kinase catalytic domain (presumed)
C3F22_RS09610	SM00829	Enoylreductase
C3F22_RS09665	SM00244	prohibitin homologues
C3F22_RS09670	SM00881	CoA binding domain
C3F22_RS09690	SM00861	Transketolase, pyrimidine binding domain
C3F22_RS09790	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS09905	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS09915	SM00947	Carbonic anhydrase
C3F22_RS09970	SM01018	B12 binding domain
C3F22_RS10010	SM01120	C3F22_RS10010
C3F22_RS10020	SM00822	C3F22_RS10020
C3F22_RS10050	SM01057	Eukaryotic-type carbonic anhydrase
C3F22_RS10075	SM00563	Phosphate acyltransferases
C3F22_RS10090	SM00244	prohibitin homologues
C3F22_RS10145	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS10180	SM00845	GatB domain
C3F22_RS10295	SM01060	C3F22_RS10295
C3F22_RS10320	SM00052	Putative diguanylate phosphodiesterase
C3F22_RS10320	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C3F22_RS10320	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C3F22_RS10320	SM00091	PAS domain
C3F22_RS10320	SM00267	diguanylate cyclase
C3F22_RS10325	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS10340	SM00852	Probable molybdopterin binding domain
C3F22_RS10345	SM00852	Probable molybdopterin binding domain
C3F22_RS10360	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS10370	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C3F22_RS10485	SM01040	BRO family, N-terminal domain
C3F22_RS10505	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS10555	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3F22_RS10555	SM00895	C3F22_RS10555
C3F22_RS10665	SM00220	Serine/Threonine protein kinases, catalytic domain
C3F22_RS10665	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS10700	SM00487	DEAD-like helicases superfamily
C3F22_RS10790	SM01004	Delta-aminolevulinic acid dehydratase
C3F22_RS10830	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS10835	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS10915	SM00563	Phosphate acyltransferases
C3F22_RS10945	SM00843	C3F22_RS10945
C3F22_RS10985	SM00838	Elongation factor G C-terminus
C3F22_RS10985	SM00889	Elongation factor G, domain IV
C3F22_RS11005	SM00825	Beta-ketoacyl synthase
C3F22_RS11025	SM01005	Alanine racemase, C-terminal domain
C3F22_RS11035	SM00344	helix_turn_helix ASNC type
C3F22_RS11040	SM00257	Lysin motif
C3F22_RS11050	SM00822	C3F22_RS11050
C3F22_RS11055	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
C3F22_RS11100	SM00363	S4 RNA-binding domain
C3F22_RS11110	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS11180	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C3F22_RS11180	SM00292	breast cancer carboxy-terminal domain
C3F22_RS11180	SM00532	Ligase N family
C3F22_RS11185	SM00771	ZipA, C-terminal domain (FtsZ-binding)
C3F22_RS11195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3F22_RS11230	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS11230	SM00962	SRP54-type protein, GTPase domain
C3F22_RS11230	SM00963	SRP54-type protein, helical bundle domain
C3F22_RS11575	SM00957	SecA DEAD-like domain
C3F22_RS11575	SM00958	SecA preprotein cross-linking domain
C3F22_RS11615	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS11685	SM00448	cheY-homologous receiver domain
C3F22_RS11685	SM00862	Transcriptional regulatory protein, C terminal
C3F22_RS11690	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3F22_RS11690	SM00387	Histidine kinase-like ATPases
C3F22_RS11690	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS11810	SM00387	Histidine kinase-like ATPases
C3F22_RS11810	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS11850	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C3F22_RS11875	SM01321	C3F22_RS11875
C3F22_RS11895	SM00564	beta-propeller repeat
C3F22_RS11920	SM00028	Tetratricopeptide repeats
C3F22_RS11930	SM00562	C3F22_RS11930
C3F22_RS11940	SM00014	Acid phosphatase homologues
C3F22_RS12010	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS12020	SM00671	Sel1-like repeats.
C3F22_RS12035	SM00479	C3F22_RS12035
C3F22_RS12045	SM00450	Rhodanese Homology Domain
C3F22_RS12115	SM00267	diguanylate cyclase
C3F22_RS12160	SM00052	Putative diguanylate phosphodiesterase
C3F22_RS12160	SM00267	diguanylate cyclase
C3F22_RS12165	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3F22_RS12165	SM00245	tail specific protease
C3F22_RS12215	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS12215	SM00994	ClpX C4-type zinc finger
C3F22_RS12215	SM01086	C-terminal, D2-small domain, of ClpB protein
C3F22_RS12235	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
C3F22_RS12240	SM00917	LeuA allosteric (dimerisation) domain
C3F22_RS12255	SM00671	Sel1-like repeats.
C3F22_RS12395	SM00360	RNA recognition motif
C3F22_RS12430	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
C3F22_RS12430	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
C3F22_RS12430	SM00493	C3F22_RS12430
C3F22_RS12460	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS12480	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C3F22_RS12495	SM00870	C3F22_RS12495
C3F22_RS12505	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS12510	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS12525	SM01329	C3F22_RS12525
C3F22_RS12575	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C3F22_RS12595	SM01060	C3F22_RS12595
C3F22_RS12685	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C3F22_RS12700	SM00363	S4 RNA-binding domain
C3F22_RS12710	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS12755	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3F22_RS12760	SM00460	Transglutaminase/protease-like homologues
C3F22_RS12840	SM00849	Metallo-beta-lactamase superfamily
C3F22_RS12905	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3F22_RS12905	SM01091	Transporter associated domain
C3F22_RS12930	SM00487	DEAD-like helicases superfamily
C3F22_RS12930	SM00490	helicase superfamily c-terminal domain
C3F22_RS12975	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS12975	SM00322	K homology RNA-binding domain
C3F22_RS12980	SM01387	C3F22_RS12980
C3F22_RS13050	SM00316	Ribosomal protein S1-like RNA-binding domain
C3F22_RS13050	SM00732	Likely ribonuclease with RNase H fold.
C3F22_RS13055	SM00448	cheY-homologous receiver domain
C3F22_RS13055	SM00862	Transcriptional regulatory protein, C terminal
C3F22_RS13065	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3F22_RS13065	SM00387	Histidine kinase-like ATPases
C3F22_RS13065	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS13105	SM00387	Histidine kinase-like ATPases
C3F22_RS13160	SM00663	RNA polymerase I subunit A N-terminus
C3F22_RS13185	SM00649	Ribosomal protein L11/L12
C3F22_RS13190	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
C3F22_RS13190	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
C3F22_RS13240	SM00240	Forkhead associated domain
C3F22_RS13250	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3F22_RS13260	SM00528	Domain in histone-like proteins of HNS family
C3F22_RS13290	SM00448	cheY-homologous receiver domain
C3F22_RS13290	SM00850	LytTr DNA-binding domain
C3F22_RS13335	SM00465	GIY-YIG type nucleases (URI domain)
C3F22_RS13340	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS13340	SM01086	C-terminal, D2-small domain, of ClpB protein
C3F22_RS13490	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS13515	SM00477	DNA/RNA non-specific endonuclease
C3F22_RS13515	SM00892	DNA/RNA non-specific endonuclease
C3F22_RS13670	SM00387	Histidine kinase-like ATPases
C3F22_RS13670	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS13670	SM00448	cheY-homologous receiver domain
C3F22_RS13680	SM00421	helix_turn_helix, Lux Regulon
C3F22_RS13680	SM00448	cheY-homologous receiver domain
C3F22_RS13740	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3F22_RS13775	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3F22_RS13775	SM01240	C3F22_RS13775
C3F22_RS13785	SM00849	Metallo-beta-lactamase superfamily
C3F22_RS13820	SM00864	Tubulin/FtsZ family, GTPase domain
C3F22_RS13820	SM00865	Tubulin/FtsZ family, C-terminal domain
C3F22_RS13825	SM00842	Cell division protein FtsA
C3F22_RS13945	SM00387	Histidine kinase-like ATPases
C3F22_RS13945	SM00433	TopoisomeraseII
C3F22_RS13990	SM00836	DALR anticodon binding domain
C3F22_RS13990	SM01016	Arginyl tRNA synthetase N terminal dom
C3F22_RS14005	SM00450	Rhodanese Homology Domain
C3F22_RS14015	SM00248	ankyrin repeats
C3F22_RS14020	SM01060	C3F22_RS14020
C3F22_RS14070	SM01130	C3F22_RS14070
C3F22_RS14085	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS14090	SM00052	Putative diguanylate phosphodiesterase
C3F22_RS14090	SM00091	PAS domain
C3F22_RS14090	SM00267	diguanylate cyclase
C3F22_RS14110	SM00644	C3F22_RS14110
C3F22_RS14175	SM00062	Bacterial periplasmic substrate-binding proteins
C3F22_RS14180	SM00062	Bacterial periplasmic substrate-binding proteins
C3F22_RS14195	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS14210	SM00904	Riboflavin kinase
C3F22_RS14250	SM00267	diguanylate cyclase
C3F22_RS14370	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS14375	SM00829	Enoylreductase
C3F22_RS14385	SM00387	Histidine kinase-like ATPases
C3F22_RS14385	SM00433	TopoisomeraseII
C3F22_RS14395	SM00480	DNA polymerase III beta subunit
C3F22_RS14400	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS14400	SM00760	Bacterial dnaA protein helix-turn-helix domain
C3F22_RS14415	SM01234	C3F22_RS14415
C3F22_RS14505	SM01034	Sensors of blue-light using FAD
C3F22_RS14510	SM00829	Enoylreductase
C3F22_RS14530	SM01001	AIR carboxylase
C3F22_RS14600	SM00248	ankyrin repeats
C3F22_RS14665	SM00830	Chorismate mutase type II
C3F22_RS14715	SM00271	DnaJ molecular chaperone homology domain
C3F22_RS14755	SM01321	C3F22_RS14755
C3F22_RS14760	SM00829	Enoylreductase
C3F22_RS14780	SM00478	endonuclease III
C3F22_RS14935	SM00226	Low molecular weight phosphatase family
C3F22_RS14945	SM00984	UDP binding domain
C3F22_RS15025	SM00984	UDP binding domain
C3F22_RS15055	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS15185	SM00487	DEAD-like helicases superfamily
C3F22_RS15185	SM00490	helicase superfamily c-terminal domain
C3F22_RS15195	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS15205	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS15250	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS15285	SM00507	HNH nucleases
C3F22_RS15295	SM00487	DEAD-like helicases superfamily
C3F22_RS15395	SM00267	diguanylate cyclase
C3F22_RS15415	SM00091	PAS domain
C3F22_RS15415	SM00387	Histidine kinase-like ATPases
C3F22_RS15415	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS15420	SM00448	cheY-homologous receiver domain
C3F22_RS15420	SM00862	Transcriptional regulatory protein, C terminal
C3F22_RS15465	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS15540	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS15590	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS15700	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS15725	SM00641	Glycosyl hydrolases family 25
C3F22_RS15745	SM01091	Transporter associated domain
C3F22_RS15765	SM00434	DNA Topoisomerase IV
C3F22_RS15805	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS15815	SM00938	Nitrogen regulatory protein P-II
C3F22_RS15880	SM00245	tail specific protease
C3F22_RS15885	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS15885	SM00448	cheY-homologous receiver domain
C3F22_RS15890	SM00387	Histidine kinase-like ATPases
C3F22_RS15890	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS15895	SM00421	helix_turn_helix, Lux Regulon
C3F22_RS15895	SM00448	cheY-homologous receiver domain
C3F22_RS15925	SM00899	C3F22_RS15925
C3F22_RS16035	SM00732	Likely ribonuclease with RNase H fold.
C3F22_RS16125	SM00829	Enoylreductase
C3F22_RS16155	SM00857	Resolvase, N terminal domain
C3F22_RS16185	SM00829	Enoylreductase
C3F22_RS16280	SM00470	ParB-like nuclease domain
C3F22_RS16325	SM00972	Spore Coat Protein U domain
C3F22_RS16340	SM00972	Spore Coat Protein U domain
C3F22_RS16350	SM00972	Spore Coat Protein U domain
C3F22_RS16385	SM00857	Resolvase, N terminal domain
C3F22_RS16425	SM01034	Sensors of blue-light using FAD
C3F22_RS16480	SM00347	helix_turn_helix multiple antibiotic resistance protein
C3F22_RS16490	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS16500	SM00267	diguanylate cyclase
C3F22_RS16505	SM00857	Resolvase, N terminal domain
C3F22_RS16630	SM00318	Staphylococcal nuclease homologues
C3F22_RS16645	SM00857	Resolvase, N terminal domain
C3F22_RS16655	SM00849	Metallo-beta-lactamase superfamily
C3F22_RS16840	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS16840	SM00876	Biotin and Thiamin Synthesis associated domain
C3F22_RS16990	SM00866	C3F22_RS16990
C3F22_RS17010	SM00470	ParB-like nuclease domain
C3F22_RS17070	SM00829	Enoylreductase
C3F22_RS17120	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS17160	SM00267	diguanylate cyclase
C3F22_RS17165	SM00530	Helix-turn-helix XRE-family like proteins 
C3F22_RS17210	SM00422	helix_turn_helix, mercury resistance
C3F22_RS17220	SM00899	C3F22_RS17220
C3F22_RS17245	SM00226	Low molecular weight phosphatase family
C3F22_RS17250	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3F22_RS17260	SM00857	Resolvase, N terminal domain
C3F22_RS17340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3F22_RS17340	SM00387	Histidine kinase-like ATPases
C3F22_RS17340	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS17345	SM00448	cheY-homologous receiver domain
C3F22_RS17345	SM00862	Transcriptional regulatory protein, C terminal
C3F22_RS17425	SM00671	Sel1-like repeats.
C3F22_RS17600	SM00829	Enoylreductase
C3F22_RS17630	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS17685	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C3F22_RS17685	SM00267	diguanylate cyclase
C3F22_RS17770	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3F22_RS17785	SM00861	Transketolase, pyrimidine binding domain
C3F22_RS17820	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3F22_RS17820	SM00895	C3F22_RS17820
C3F22_RS17855	SM00382	ATPases associated with a variety of cellular activities
C3F22_RS17885	SM00387	Histidine kinase-like ATPases
C3F22_RS17885	SM00388	His Kinase A (phosphoacceptor) domain
C3F22_RS17890	SM00448	cheY-homologous receiver domain
C3F22_RS17890	SM00862	Transcriptional regulatory protein, C terminal
C3F22_RS17915	SM00903	Flavin reductase like domain
C3F22_RS18005	SM00342	helix_turn_helix, arabinose operon control protein
C3F22_RS18015	SM00822	C3F22_RS18015
C3F22_RS18125	SM00829	Enoylreductase
C3F22_RS18135	SM00829	Enoylreductase
C3F22_RS18140	SM00829	Enoylreductase
C3F22_RS18150	SM00822	C3F22_RS18150
C3F22_RS18155	SM00829	Enoylreductase
C3F22_RS18185	SM00271	DnaJ molecular chaperone homology domain
