locus-tag class description NDN12_RS00005 PF00308 Bacterial dnaA protein NDN12_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix NDN12_RS00005 PF11638 DnaA N-terminal domain NDN12_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain NDN12_RS00010 PF02767 DNA polymerase III beta subunit, central domain NDN12_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain NDN12_RS00015 PF02463 RecF/RecN/SMC N terminal domain NDN12_RS00020 PF00204 DNA gyrase B NDN12_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus NDN12_RS00020 PF18053 DNA gyrase B subunit insert domain NDN12_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS00020 PF01751 Toprim domain NDN12_RS00035 PF09335 SNARE associated Golgi protein NDN12_RS00040 PF00005 ABC transporter NDN12_RS00040 PF12848 ABC transporter NDN12_RS00065 PF01521 Iron-sulphur cluster biosynthesis NDN12_RS00070 PF03702 Anhydro-N-acetylmuramic acid kinase NDN12_RS00075 PF00579 tRNA synthetases class I (W and Y) NDN12_RS00130 PF00171 Aldehyde dehydrogenase family NDN12_RS00135 PF00209 Sodium:neurotransmitter symporter family NDN12_RS00145 PF01189 16S rRNA methyltransferase RsmB/F NDN12_RS00145 PF01029 NusB family NDN12_RS00150 PF02911 Formyl transferase, C-terminal domain NDN12_RS00150 PF00551 Formyl transferase NDN12_RS00155 PF00920 Dehydratase family NDN12_RS00170 PF03466 LysR substrate binding domain NDN12_RS00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS00175 PF03466 LysR substrate binding domain NDN12_RS00175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS00185 PF00860 Permease family NDN12_RS00190 PF00311 Phosphoenolpyruvate carboxylase NDN12_RS00195 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS00200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_RS00205 PF00873 AcrB/AcrD/AcrF family NDN12_RS00215 PF00226 DnaJ domain NDN12_RS00215 PF00684 DnaJ central domain NDN12_RS00215 PF01556 DnaJ C terminal domain NDN12_RS00220 PF05173 Dihydrodipicolinate reductase, C-terminus NDN12_RS00220 PF01113 Dihydrodipicolinate reductase, N-terminus NDN12_RS00230 PF07690 Major Facilitator Superfamily NDN12_RS00235 PF00248 Aldo/keto reductase family NDN12_RS00240 PF03466 LysR substrate binding domain NDN12_RS00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS00250 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS00250 PF00155 Aminotransferase class I and II NDN12_RS00255 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_RS00255 PF00107 Zinc-binding dehydrogenase NDN12_RS00260 PF03352 Methyladenine glycosylase NDN12_RS00275 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN12_RS00275 PF14815 NUDIX domain NDN12_RS00275 PF00633 Helix-hairpin-helix motif NDN12_RS00275 PF10576 Iron-sulfur binding domain of endonuclease III NDN12_RS00285 PF07043 Protein of unknown function (DUF1328) NDN12_RS00290 PF03692 Putative zinc- or iron-chelating domain NDN12_RS00295 PF07995 Glucose / Sorbosone dehydrogenase NDN12_RS00300 PF00144 Beta-lactamase NDN12_RS00305 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_RS00305 PF12002 MgsA AAA+ ATPase C terminal NDN12_RS00305 PF16193 AAA C-terminal domain NDN12_RS00310 PF00892 EamA-like transporter family NDN12_RS00325 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS00325 PF00593 TonB dependent receptor NDN12_RS00330 PF01259 SAICAR synthetase NDN12_RS00340 PF00701 Dihydrodipicolinate synthetase family NDN12_RS00345 PF00857 Isochorismatase family NDN12_RS00350 PF01037 Lrp/AsnC ligand binding domain NDN12_RS00360 PF01380 SIS domain NDN12_RS00365 PF12804 MobA-like NTP transferase domain NDN12_RS00365 PF14602 Hexapeptide repeat of succinyl-transferase NDN12_RS00365 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS00370 PF04608 Phosphatidylglycerophosphatase A NDN12_RS00375 PF00586 AIR synthase related protein, N-terminal domain NDN12_RS00375 PF02769 AIR synthase related protein, C-terminal domain NDN12_RS00380 PF01029 NusB family NDN12_RS00385 PF00885 6,7-dimethyl-8-ribityllumazine synthase NDN12_RS00390 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN12_RS00390 PF00925 GTP cyclohydrolase II NDN12_RS00415 PF02580 D-Tyr-tRNA(Tyr) deacylase NDN12_RS00420 PF00199 Catalase NDN12_RS00420 PF06628 Catalase-related immune-responsive NDN12_RS00430 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN12_RS00430 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NDN12_RS00440 PF00581 Rhodanese-like domain NDN12_RS00445 PF02666 Phosphatidylserine decarboxylase NDN12_RS00455 PF09208 Restriction endonuclease MspI NDN12_RS00460 PF00145 C-5 cytosine-specific DNA methylase NDN12_RS00480 PF03466 LysR substrate binding domain NDN12_RS00480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS00485 PF03466 LysR substrate binding domain NDN12_RS00485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS00500 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS00500 PF00989 PAS fold NDN12_RS00500 PF11808 Phosphate regulon sensor protein PhoR NDN12_RS00505 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS00505 PF00072 Response regulator receiver domain NDN12_RS00515 PF00106 short chain dehydrogenase NDN12_RS00520 PF01554 MatE NDN12_RS00525 PF00155 Aminotransferase class I and II NDN12_RS00530 PF04286 Protein of unknown function (DUF445) NDN12_RS00545 PF04262 Glutamate-cysteine ligase NDN12_RS00550 PF02600 Disulfide bond formation protein DsbB NDN12_RS00555 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_RS00555 PF04717 Type VI secretion system, phage-baseplate injector NDN12_RS00555 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_RS00560 PF00877 NlpC/P60 family NDN12_RS00560 PF01476 LysM domain NDN12_RS00590 PF05728 Uncharacterised protein family (UPF0227) NDN12_RS00595 PF01751 Toprim domain NDN12_RS00595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS00595 PF00986 DNA gyrase B subunit, carboxyl terminus NDN12_RS00595 PF00204 DNA gyrase B NDN12_RS00605 PF02653 Branched-chain amino acid transport system / permease component NDN12_RS00615 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN12_RS00615 PF00005 ABC transporter NDN12_RS00620 PF00005 ABC transporter NDN12_RS00645 PF12796 Ankyrin repeats (3 copies) NDN12_RS00645 PF07722 Peptidase C26 NDN12_RS00655 PF11412 Disulphide bond corrector protein DsbC NDN12_RS00655 PF02683 Cytochrome C biogenesis protein transmembrane region NDN12_RS00665 PF17151 Periplasmic sensor domain NDN12_RS00665 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS00670 PF07859 alpha/beta hydrolase fold NDN12_RS00680 PF03960 ArsC family NDN12_RS00685 PF03372 Endonuclease/Exonuclease/phosphatase family NDN12_RS00690 PF00156 Phosphoribosyl transferase domain NDN12_RS00695 PF01820 D-ala D-ala ligase N-terminus NDN12_RS00695 PF07478 D-ala D-ala ligase C-terminus NDN12_RS00705 PF00106 short chain dehydrogenase NDN12_RS00720 PF01040 UbiA prenyltransferase family NDN12_RS00730 PF01565 FAD binding domain NDN12_RS00730 PF04030 D-arabinono-1,4-lactone oxidase NDN12_RS00735 PF00106 short chain dehydrogenase NDN12_RS00755 PF01047 MarR family NDN12_RS00760 PF00255 Glutathione peroxidase NDN12_RS00765 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NDN12_RS00765 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NDN12_RS00770 PF03033 Glycosyltransferase family 28 N-terminal domain NDN12_RS00770 PF04101 Glycosyltransferase family 28 C-terminal domain NDN12_RS00775 PF08245 Mur ligase middle domain NDN12_RS00775 PF02875 Mur ligase family, glutamate ligase domain NDN12_RS00775 PF01225 Mur ligase family, catalytic domain NDN12_RS00780 PF07478 D-ala D-ala ligase C-terminus NDN12_RS00780 PF01820 D-ala D-ala ligase N-terminus NDN12_RS00785 PF08478 POTRA domain, FtsQ-type NDN12_RS00785 PF03799 Cell division protein FtsQ NDN12_RS00790 PF02491 SHS2 domain inserted in FTSA NDN12_RS00795 PF00091 Tubulin/FtsZ family, GTPase domain NDN12_RS00795 PF12327 FtsZ family, C-terminal domain NDN12_RS00800 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NDN12_RS00815 PF17831 Pyruvate dehydrogenase E1 component middle domain NDN12_RS00815 PF00456 Transketolase, thiamine diphosphate binding domain NDN12_RS00820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN12_RS00820 PF02817 e3 binding domain NDN12_RS00820 PF00364 Biotin-requiring enzyme NDN12_RS00830 PF01169 Uncharacterized protein family UPF0016 NDN12_RS00835 PF00258 Flavodoxin NDN12_RS00835 PF01613 Flavin reductase like domain NDN12_RS00840 PF00478 IMP dehydrogenase / GMP reductase domain NDN12_RS00840 PF00571 CBS domain NDN12_RS00845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN12_RS00845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN12_RS00845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN12_RS00845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN12_RS00850 PF01243 Pyridoxamine 5'-phosphate oxidase NDN12_RS00850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NDN12_RS00855 PF02272 DHHA1 domain NDN12_RS00855 PF01368 DHH family NDN12_RS00855 PF17768 RecJ OB domain NDN12_RS00880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_RS00885 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NDN12_RS00890 PF04452 RNA methyltransferase NDN12_RS00895 PF00924 Mechanosensitive ion channel NDN12_RS00905 PF16177 Acetyl-coenzyme A synthetase N-terminus NDN12_RS00905 PF13193 AMP-binding enzyme C-terminal domain NDN12_RS00905 PF00501 AMP-binding enzyme NDN12_RS00910 PF00857 Isochorismatase family NDN12_RS00915 PF01037 Lrp/AsnC ligand binding domain NDN12_RS00920 PF00296 Luciferase-like monooxygenase NDN12_RS00925 PF03358 NADPH-dependent FMN reductase NDN12_RS00930 PF00072 Response regulator receiver domain NDN12_RS00930 PF00196 Bacterial regulatory proteins, luxR family NDN12_RS00940 PF00905 Penicillin binding protein transpeptidase domain NDN12_RS00945 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS00950 PF17755 UvrA DNA-binding domain NDN12_RS00950 PF17760 UvrA interaction domain NDN12_RS00955 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS00955 PF16925 Tetracyclin repressor-like, C-terminal domain NDN12_RS00960 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_RS00960 PF09277 Erythronolide synthase, docking NDN12_RS00960 PF16197 Ketoacyl-synthetase C-terminal extension NDN12_RS00960 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN12_RS00960 PF08659 KR domain NDN12_RS00960 PF00550 Phosphopantetheine attachment site NDN12_RS00960 PF14765 Polyketide synthase dehydratase NDN12_RS00960 PF00698 Acyl transferase domain NDN12_RS00960 PF08990 Erythronolide synthase docking NDN12_RS00960 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN12_RS00975 PF03070 TENA/THI-4/PQQC family NDN12_RS00985 PF07690 Major Facilitator Superfamily NDN12_RS00990 PF00436 Single-strand binding protein family NDN12_RS01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS01010 PF00857 Isochorismatase family NDN12_RS01015 PF05726 Pirin C-terminal cupin domain NDN12_RS01015 PF02678 Pirin NDN12_RS01020 PF01593 Flavin containing amine oxidoreductase NDN12_RS01050 PF02705 K+ potassium transporter NDN12_RS01065 PF00230 Major intrinsic protein NDN12_RS01080 PF00977 Histidine biosynthesis protein NDN12_RS01085 PF01636 Phosphotransferase enzyme family NDN12_RS01100 PF00296 Luciferase-like monooxygenase NDN12_RS01105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS01105 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS01110 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS01110 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS01110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS01125 PF00916 Sulfate permease family NDN12_RS01125 PF01740 STAS domain NDN12_RS01130 PF00977 Histidine biosynthesis protein NDN12_RS01150 PF00117 Glutamine amidotransferase class-I NDN12_RS01155 PF00475 Imidazoleglycerol-phosphate dehydratase NDN12_RS01185 PF08241 Methyltransferase domain NDN12_RS01190 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain NDN12_RS01190 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain NDN12_RS01195 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS01195 PF00672 HAMP domain NDN12_RS01200 PF00072 Response regulator receiver domain NDN12_RS01200 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS01205 PF00575 S1 RNA binding domain NDN12_RS01205 PF09371 Tex-like protein N-terminal domain NDN12_RS01205 PF16921 Tex protein YqgF-like domain NDN12_RS01205 PF17674 HHH domain NDN12_RS01240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS01240 PF03466 LysR substrate binding domain NDN12_RS01245 PF03600 Citrate transporter NDN12_RS01255 PF00083 Sugar (and other) transporter NDN12_RS01260 PF13411 MerR HTH family regulatory protein NDN12_RS01265 PF00550 Phosphopantetheine attachment site NDN12_RS01265 PF07993 Male sterility protein NDN12_RS01270 PF00106 short chain dehydrogenase NDN12_RS01275 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN12_RS01280 PF12848 ABC transporter NDN12_RS01280 PF00005 ABC transporter NDN12_RS01300 PF00529 HlyD membrane-fusion protein of T1SS NDN12_RS01300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_RS01305 PF00873 AcrB/AcrD/AcrF family NDN12_RS01310 PF01545 Cation efflux family NDN12_RS01340 PF00324 Amino acid permease NDN12_RS01355 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN12_RS01370 PF01795 MraW methylase family NDN12_RS01375 PF04999 Cell division protein FtsL NDN12_RS01385 PF02875 Mur ligase family, glutamate ligase domain NDN12_RS01385 PF01225 Mur ligase family, catalytic domain NDN12_RS01385 PF08245 Mur ligase middle domain NDN12_RS01390 PF08245 Mur ligase middle domain NDN12_RS01390 PF02875 Mur ligase family, glutamate ligase domain NDN12_RS01390 PF01225 Mur ligase family, catalytic domain NDN12_RS01395 PF00953 Glycosyl transferase family 4 NDN12_RS01400 PF13847 Methyltransferase domain NDN12_RS01405 PF17092 Penicillin-binding protein OB-like domain NDN12_RS01405 PF00912 Transglycosylase NDN12_RS01405 PF00905 Penicillin binding protein transpeptidase domain NDN12_RS01410 PF11104 Type IV pilus assembly protein PilM; NDN12_RS01415 PF05137 Fimbrial assembly protein (PilN) NDN12_RS01420 PF04350 Pilus assembly protein, PilO NDN12_RS01430 PF00263 Bacterial type II and III secretion system protein NDN12_RS01430 PF03958 Bacterial type II/III secretion system short domain NDN12_RS01430 PF07660 Secretin and TonB N terminus short domain NDN12_RS01430 PF11741 AMIN domain NDN12_RS01435 PF01202 Shikimate kinase NDN12_RS01440 PF01761 3-dehydroquinate synthase NDN12_RS01450 PF00310 Glutamine amidotransferases class-II NDN12_RS01450 PF04898 Glutamate synthase central domain NDN12_RS01450 PF01645 Conserved region in glutamate synthase NDN12_RS01450 PF01493 GXGXG motif NDN12_RS01455 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN12_RS01455 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS01460 PF07690 Major Facilitator Superfamily NDN12_RS01470 PF04011 LemA family NDN12_RS01475 PF04536 TPM domain NDN12_RS01485 PF00114 Pilin (bacterial filament) NDN12_RS01485 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS01495 PF00114 Pilin (bacterial filament) NDN12_RS01495 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS01505 PF01040 UbiA prenyltransferase family NDN12_RS01510 PF15864 Protein glycosylation ligase NDN12_RS01510 PF04932 O-Antigen ligase NDN12_RS01510 PF11846 Virulence factor membrane-bound polymerase, C-terminal NDN12_RS01515 PF00210 Ferritin-like domain NDN12_RS01520 PF04324 BFD-like [2Fe-2S] binding domain NDN12_RS01525 PF01042 Endoribonuclease L-PSP NDN12_RS01530 PF13291 ACT domain NDN12_RS01530 PF04607 Region found in RelA / SpoT proteins NDN12_RS01530 PF02824 TGS domain NDN12_RS01535 PF01192 RNA polymerase Rpb6 NDN12_RS01540 PF00625 Guanylate kinase NDN12_RS01545 PF02401 LytB protein NDN12_RS01550 PF00114 Pilin (bacterial filament) NDN12_RS01550 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS01575 PF00114 Pilin (bacterial filament) NDN12_RS01575 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS01610 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS01610 PF00114 Pilin (bacterial filament) NDN12_RS01615 PF00886 Ribosomal protein S16 NDN12_RS01620 PF05239 PRC-barrel domain NDN12_RS01620 PF01782 RimM N-terminal domain NDN12_RS01625 PF01746 tRNA (Guanine-1)-methyltransferase NDN12_RS01630 PF01245 Ribosomal protein L19 NDN12_RS01635 PF09157 Pseudouridine synthase II TruB, C-terminal NDN12_RS01635 PF16198 tRNA pseudouridylate synthase B C-terminal domain NDN12_RS01635 PF01509 TruB family pseudouridylate synthase (N terminal domain) NDN12_RS01640 PF01925 Sulfite exporter TauE/SafE NDN12_RS01645 PF00892 EamA-like transporter family NDN12_RS01655 PF00892 EamA-like transporter family NDN12_RS01660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN12_RS01660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN12_RS01665 PF01565 FAD binding domain NDN12_RS01665 PF02913 FAD linked oxidases, C-terminal domain NDN12_RS01685 PF03992 Antibiotic biosynthesis monooxygenase NDN12_RS01690 PF02525 Flavodoxin-like fold NDN12_RS01705 PF07690 Major Facilitator Superfamily NDN12_RS01710 PF12805 FUSC-like inner membrane protein yccS NDN12_RS01715 PF00080 Copper/zinc superoxide dismutase (SODC) NDN12_RS01720 PF01594 AI-2E family transporter NDN12_RS01725 PF13614 AAA domain NDN12_RS01735 PF01209 ubiE/COQ5 methyltransferase family NDN12_RS01770 PF00082 Subtilase family NDN12_RS01785 PF05746 DALR anticodon binding domain NDN12_RS01785 PF02092 Glycyl-tRNA synthetase beta subunit NDN12_RS01790 PF02091 Glycyl-tRNA synthetase alpha subunit NDN12_RS01815 PF01743 Poly A polymerase head domain NDN12_RS01815 PF00571 CBS domain NDN12_RS01820 PF04024 PspC domain NDN12_RS01830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS01830 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS01830 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN12_RS01830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS01840 PF01488 Shikimate / quinate 5-dehydrogenase NDN12_RS01840 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NDN12_RS01840 PF08501 Shikimate dehydrogenase substrate binding domain NDN12_RS01845 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS01845 PF00155 Aminotransferase class I and II NDN12_RS01855 PF01218 Coproporphyrinogen III oxidase NDN12_RS01865 PF00925 GTP cyclohydrolase II NDN12_RS01870 PF02779 Transketolase, pyrimidine binding domain NDN12_RS01870 PF02780 Transketolase, C-terminal domain NDN12_RS01870 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NDN12_RS01875 PF00459 Inositol monophosphatase family NDN12_RS01885 PF00271 Helicase conserved C-terminal domain NDN12_RS01885 PF00270 DEAD/DEAH box helicase NDN12_RS01890 PF00005 ABC transporter NDN12_RS01895 PF02405 Permease MlaE NDN12_RS01900 PF02470 MlaD protein NDN12_RS01905 PF05494 MlaC protein NDN12_RS01915 PF01544 CorA-like Mg2+ transporter protein NDN12_RS01920 PF03641 Possible lysine decarboxylase NDN12_RS01925 PF00293 NUDIX domain NDN12_RS01930 PF00156 Phosphoribosyl transferase domain NDN12_RS01935 PF00271 Helicase conserved C-terminal domain NDN12_RS01935 PF00270 DEAD/DEAH box helicase NDN12_RS01935 PF17191 RecG wedge domain NDN12_RS01950 PF01553 Acyltransferase NDN12_RS01960 PF00375 Sodium:dicarboxylate symporter family NDN12_RS01970 PF01926 50S ribosome-binding GTPase NDN12_RS01975 PF02082 Transcriptional regulator NDN12_RS01980 PF00042 Globin NDN12_RS01980 PF00970 Oxidoreductase FAD-binding domain NDN12_RS01980 PF00175 Oxidoreductase NAD-binding domain NDN12_RS01985 PF05872 Bacterial protein of unknown function (DUF853) NDN12_RS01990 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN12_RS01995 PF00117 Glutamine amidotransferase class-I NDN12_RS02000 PF00338 Ribosomal protein S10p/S20e NDN12_RS02005 PF00297 Ribosomal protein L3 NDN12_RS02010 PF00573 Ribosomal protein L4/L1 family NDN12_RS02015 PF00276 Ribosomal protein L23 NDN12_RS02020 PF00181 Ribosomal Proteins L2, RNA binding domain NDN12_RS02020 PF03947 Ribosomal Proteins L2, C-terminal domain NDN12_RS02025 PF00203 Ribosomal protein S19 NDN12_RS02030 PF00237 Ribosomal protein L22p/L17e NDN12_RS02040 PF00252 Ribosomal protein L16p/L10e NDN12_RS02045 PF00831 Ribosomal L29 protein NDN12_RS02050 PF00366 Ribosomal protein S17 NDN12_RS02055 PF00238 Ribosomal protein L14p/L23e NDN12_RS02060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NDN12_RS02060 PF00467 KOW motif NDN12_RS02065 PF00673 ribosomal L5P family C-terminus NDN12_RS02065 PF00281 Ribosomal protein L5 NDN12_RS02070 PF00253 Ribosomal protein S14p/S29e NDN12_RS02075 PF00410 Ribosomal protein S8 NDN12_RS02080 PF00347 Ribosomal protein L6 NDN12_RS02085 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NDN12_RS02090 PF00333 Ribosomal protein S5, N-terminal domain NDN12_RS02090 PF03719 Ribosomal protein S5, C-terminal domain NDN12_RS02095 PF00327 Ribosomal protein L30p/L7e NDN12_RS02100 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NDN12_RS02105 PF00344 SecY translocase NDN12_RS02110 PF00444 Ribosomal protein L36 NDN12_RS02115 PF00416 Ribosomal protein S13/S18 NDN12_RS02120 PF00411 Ribosomal protein S11 NDN12_RS02125 PF00163 Ribosomal protein S4/S9 N-terminal domain NDN12_RS02125 PF01479 S4 domain NDN12_RS02130 PF01000 RNA polymerase Rpb3/RpoA insert domain NDN12_RS02130 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NDN12_RS02130 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NDN12_RS02135 PF01196 Ribosomal protein L17 NDN12_RS02145 PF00743 Flavin-binding monooxygenase-like NDN12_RS02155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS02155 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS02155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS02160 PF03937 Flavinator of succinate dehydrogenase NDN12_RS02195 PF00892 EamA-like transporter family NDN12_RS02200 PF12833 Helix-turn-helix domain NDN12_RS02220 PF01432 Peptidase family M3 NDN12_RS02230 PF08461 Ribonuclease R winged-helix domain NDN12_RS02230 PF17876 Cold shock domain NDN12_RS02230 PF08206 Ribonuclease B OB domain NDN12_RS02230 PF00773 RNB domain NDN12_RS02230 PF00575 S1 RNA binding domain NDN12_RS02275 PF01557 Fumarylacetoacetate (FAA) hydrolase family NDN12_RS02290 PF03631 Virulence factor BrkB NDN12_RS02295 PF03358 NADPH-dependent FMN reductase NDN12_RS02305 PF01790 Prolipoprotein diacylglyceryl transferase NDN12_RS02315 PF00245 Alkaline phosphatase NDN12_RS02335 PF00902 Sec-independent protein translocase protein (TatC) NDN12_RS02340 PF02416 mttA/Hcf106 family NDN12_RS02345 PF02416 mttA/Hcf106 family NDN12_RS02355 PF01725 Ham1 family NDN12_RS02370 PF00561 alpha/beta hydrolase fold NDN12_RS02370 PF07021 Methionine biosynthesis protein MetW NDN12_RS02375 PF00561 alpha/beta hydrolase fold NDN12_RS02380 PF00682 HMGL-like NDN12_RS02380 PF08502 LeuA allosteric (dimerisation) domain NDN12_RS02385 PF13640 2OG-Fe(II) oxygenase superfamily NDN12_RS02385 PF18331 PKHD-type hydroxylase C-terminal domain NDN12_RS02390 PF00593 TonB dependent receptor NDN12_RS02390 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS02395 PF01070 FMN-dependent dehydrogenase NDN12_RS02400 PF13640 2OG-Fe(II) oxygenase superfamily NDN12_RS02400 PF18331 PKHD-type hydroxylase C-terminal domain NDN12_RS02405 PF00593 TonB dependent receptor NDN12_RS02405 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS02410 PF00593 TonB dependent receptor NDN12_RS02410 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS02415 PF05698 Bacterial trigger factor protein (TF) C-terminus NDN12_RS02415 PF05697 Bacterial trigger factor protein (TF) NDN12_RS02415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_RS02420 PF00574 Clp protease NDN12_RS02425 PF06689 ClpX C4-type zinc finger NDN12_RS02425 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_RS02425 PF07724 AAA domain (Cdc48 subfamily) NDN12_RS02440 PF05683 Fumarase C-terminus NDN12_RS02440 PF05681 Fumarate hydratase (Fumerase) NDN12_RS02445 PF02311 AraC-like ligand binding domain NDN12_RS02445 PF12833 Helix-turn-helix domain NDN12_RS02455 PF07085 DRTGG domain NDN12_RS02455 PF01515 Phosphate acetyl/butaryl transferase NDN12_RS02460 PF00871 Acetokinase family NDN12_RS02465 PF00171 Aldehyde dehydrogenase family NDN12_RS02470 PF12697 Alpha/beta hydrolase family NDN12_RS02480 PF00933 Glycosyl hydrolase family 3 N terminal domain NDN12_RS02485 PF11818 C-terminal domain of tail specific protease (DUF3340) NDN12_RS02485 PF00595 PDZ domain NDN12_RS02485 PF03572 Peptidase family S41 NDN12_RS02485 PF17804 Tail specific protease N-terminal domain NDN12_RS02510 PF16360 GTP-binding GTPase Middle Region NDN12_RS02510 PF01926 50S ribosome-binding GTPase NDN12_RS02510 PF13167 GTP-binding GTPase N-terminal NDN12_RS02525 PF13091 PLD-like domain NDN12_RS02530 PF00149 Calcineurin-like phosphoesterase NDN12_RS02535 PF00691 OmpA family NDN12_RS02535 PF01389 OmpA-like transmembrane domain NDN12_RS02540 PF17152 Periplasmic sensor domain NDN12_RS02540 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS02580 PF04273 Putative phosphatase (DUF442) NDN12_RS02580 PF00753 Metallo-beta-lactamase superfamily NDN12_RS02585 PF00561 alpha/beta hydrolase fold NDN12_RS02590 PF00085 Thioredoxin NDN12_RS02595 PF03061 Thioesterase superfamily NDN12_RS02600 PF13185 GAF domain NDN12_RS02610 PF04461 Protein of unknown function (DUF520) NDN12_RS02620 PF01266 FAD dependent oxidoreductase NDN12_RS02620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NDN12_RS02635 PF04279 Intracellular septation protein A NDN12_RS02640 PF02811 PHP domain NDN12_RS02645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS02645 PF03466 LysR substrate binding domain NDN12_RS02650 PF00248 Aldo/keto reductase family NDN12_RS02655 PF01062 Bestrophin, RFP-TM, chloride channel NDN12_RS02660 PF04002 RadC-like JAB domain NDN12_RS02665 PF02441 Flavoprotein NDN12_RS02665 PF04127 DNA / pantothenate metabolism flavoprotein NDN12_RS02675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN12_RS02675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN12_RS02680 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA NDN12_RS02700 PF02556 Preprotein translocase subunit SecB NDN12_RS02705 PF00462 Glutaredoxin NDN12_RS02715 PF03193 RsgA GTPase NDN12_RS02720 PF00929 Exonuclease NDN12_RS02745 PF02321 Outer membrane efflux protein NDN12_RS02750 PF02687 FtsX-like permease family NDN12_RS02750 PF00005 ABC transporter NDN12_RS02750 PF12704 MacB-like periplasmic core domain NDN12_RS02755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_RS02760 PF02146 Sir2 family NDN12_RS02775 PF13603 Leucyl-tRNA synthetase, Domain 2 NDN12_RS02775 PF00133 tRNA synthetases class I (I, L, M and V) NDN12_RS02775 PF08264 Anticodon-binding domain of tRNA NDN12_RS02775 PF09334 tRNA synthetases class I (M) NDN12_RS02785 PF00205 Thiamine pyrophosphate enzyme, central domain NDN12_RS02785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN12_RS02785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN12_RS02790 PF10369 Small subunit of acetolactate synthase NDN12_RS02795 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NDN12_RS02795 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NDN12_RS02800 PF00563 EAL domain NDN12_RS02800 PF03707 Bacterial signalling protein N terminal repeat NDN12_RS02800 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS02815 PF01381 Helix-turn-helix NDN12_RS02835 PF03960 ArsC family NDN12_RS02840 PF01022 Bacterial regulatory protein, arsR family NDN12_RS02845 PF01758 Sodium Bile acid symporter family NDN12_RS02855 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_RS02855 PF13018 Extended Signal Peptide of Type V secretion system NDN12_RS02855 PF03895 YadA-like membrane anchor domain NDN12_RS02855 PF05658 Head domain of trimeric autotransporter adhesin NDN12_RS02860 PF00691 OmpA family NDN12_RS02860 PF04355 SmpA / OmlA family NDN12_RS02865 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS02865 PF12833 Helix-turn-helix domain NDN12_RS02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS02870 PF03466 LysR substrate binding domain NDN12_RS02880 PF02219 Methylenetetrahydrofolate reductase NDN12_RS02885 PF01613 Flavin reductase like domain NDN12_RS02890 PF08267 Cobalamin-independent synthase, N-terminal domain NDN12_RS02890 PF01717 Cobalamin-independent synthase, Catalytic domain NDN12_RS02900 PF16658 Class II release factor RF3, C-terminal domain NDN12_RS02900 PF00009 Elongation factor Tu GTP binding domain NDN12_RS02900 PF03144 Elongation factor Tu domain 2 NDN12_RS02910 PF11738 Protein of unknown function (DUF3298) NDN12_RS02910 PF13739 Deacetylase PdaC NDN12_RS02910 PF01522 Polysaccharide deacetylase NDN12_RS02915 PF01026 TatD related DNase NDN12_RS02920 PF00330 Aconitase family (aconitate hydratase) NDN12_RS02920 PF00694 Aconitase C-terminal domain NDN12_RS02930 PF00899 ThiF family NDN12_RS02950 PF01207 Dihydrouridine synthase (Dus) NDN12_RS02955 PF00072 Response regulator receiver domain NDN12_RS02955 PF00196 Bacterial regulatory proteins, luxR family NDN12_RS02960 PF00072 Response regulator receiver domain NDN12_RS02960 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_RS02960 PF01627 Hpt domain NDN12_RS02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS02960 PF00989 PAS fold NDN12_RS02960 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS02970 PF07690 Major Facilitator Superfamily NDN12_RS02980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NDN12_RS02980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NDN12_RS02985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NDN12_RS02990 PF02233 NAD(P) transhydrogenase beta subunit NDN12_RS03000 PF00106 short chain dehydrogenase NDN12_RS03005 PF00293 NUDIX domain NDN12_RS03015 PF01261 Xylose isomerase-like TIM barrel NDN12_RS03020 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN12_RS03020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN12_RS03025 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS03030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NDN12_RS03030 PF01627 Hpt domain NDN12_RS03030 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS03030 PF00072 Response regulator receiver domain NDN12_RS03030 PF00672 HAMP domain NDN12_RS03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS03035 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS03045 PF05958 tRNA (Uracil-5-)-methyltransferase NDN12_RS03050 PF13291 ACT domain NDN12_RS03050 PF04607 Region found in RelA / SpoT proteins NDN12_RS03050 PF02824 TGS domain NDN12_RS03060 PF03819 MazG nucleotide pyrophosphohydrolase domain NDN12_RS03070 PF12626 Polymerase A arginine-rich C-terminus NDN12_RS03070 PF01743 Poly A polymerase head domain NDN12_RS03070 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN12_RS03075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NDN12_RS03080 PF02548 Ketopantoate hydroxymethyltransferase NDN12_RS03085 PF02569 Pantoate-beta-alanine ligase NDN12_RS03090 PF03668 P-loop ATPase protein family NDN12_RS03095 PF00381 PTS HPr component phosphorylation site NDN12_RS03100 PF04751 Protein of unknown function (DUF615) NDN12_RS03110 PF00501 AMP-binding enzyme NDN12_RS03110 PF13193 AMP-binding enzyme C-terminal domain NDN12_RS03115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN12_RS03115 PF03129 Anticodon binding domain NDN12_RS03115 PF02824 TGS domain NDN12_RS03115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN12_RS03120 PF05198 Translation initiation factor IF-3, N-terminal domain NDN12_RS03120 PF00707 Translation initiation factor IF-3, C-terminal domain NDN12_RS03130 PF02798 Glutathione S-transferase, N-terminal domain NDN12_RS03130 PF00043 Glutathione S-transferase, C-terminal domain NDN12_RS03145 PF09335 SNARE associated Golgi protein NDN12_RS03150 PF07690 Major Facilitator Superfamily NDN12_RS03155 PF01632 Ribosomal protein L35 NDN12_RS03160 PF00453 Ribosomal protein L20 NDN12_RS03185 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NDN12_RS03185 PF01409 tRNA synthetases class II core domain (F) NDN12_RS03190 PF01588 Putative tRNA binding domain NDN12_RS03190 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NDN12_RS03190 PF03483 B3/4 domain NDN12_RS03190 PF03484 tRNA synthetase B5 domain NDN12_RS03190 PF03147 Ferredoxin-fold anticodon binding domain NDN12_RS03195 PF00216 Bacterial DNA-binding protein NDN12_RS03205 PF07497 Rho termination factor, RNA-binding domain NDN12_RS03205 PF07498 Rho termination factor, N-terminal domain NDN12_RS03205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_RS03210 PF00085 Thioredoxin NDN12_RS03215 PF02541 Ppx/GppA phosphatase family NDN12_RS03220 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NDN12_RS03225 PF09179 TilS substrate binding domain NDN12_RS03225 PF11734 TilS substrate C-terminal domain NDN12_RS03225 PF01171 PP-loop family NDN12_RS03230 PF14748 Pyrroline-5-carboxylate reductase dimerisation NDN12_RS03230 PF03807 NADP oxidoreductase coenzyme F420-dependent NDN12_RS03235 PF02325 YGGT family NDN12_RS03240 PF01757 Acyltransferase family NDN12_RS03245 PF00476 DNA polymerase family A NDN12_RS03245 PF01612 3'-5' exonuclease NDN12_RS03245 PF01367 5'-3' exonuclease, C-terminal SAM fold NDN12_RS03245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NDN12_RS03265 PF00437 Type II/IV secretion system protein NDN12_RS03270 PF02566 OsmC-like protein NDN12_RS03275 PF01047 MarR family NDN12_RS03285 PF00795 Carbon-nitrogen hydrolase NDN12_RS03330 PF00309 Sigma-54 factor, Activator interacting domain (AID) NDN12_RS03330 PF04963 Sigma-54 factor, core binding domain NDN12_RS03330 PF04552 Sigma-54, DNA binding domain NDN12_RS03335 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NDN12_RS03340 PF01722 BolA-like protein NDN12_RS03345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN12_RS03350 PF01634 ATP phosphoribosyltransferase NDN12_RS03355 PF04542 Sigma-70 region 2 NDN12_RS03355 PF08281 Sigma-70, region 4 NDN12_RS03355 PF12680 SnoaL-like domain NDN12_RS03365 PF00815 Histidinol dehydrogenase NDN12_RS03370 PF00155 Aminotransferase class I and II NDN12_RS03375 PF04715 Anthranilate synthase component I, N terminal region NDN12_RS03375 PF00425 chorismate binding enzyme NDN12_RS03415 PF00293 NUDIX domain NDN12_RS03425 PF00814 Glycoprotease family NDN12_RS03430 PF02673 Bacitracin resistance protein BacA NDN12_RS03435 PF04445 Putative SAM-dependent methyltransferase NDN12_RS03445 PF00756 Putative esterase NDN12_RS03460 PF00834 Ribulose-phosphate 3 epimerase family NDN12_RS03470 PF07732 Multicopper oxidase NDN12_RS03470 PF07731 Multicopper oxidase NDN12_RS03470 PF00394 Multicopper oxidase NDN12_RS03475 PF05275 Copper resistance protein B precursor (CopB) NDN12_RS03490 PF00893 Small Multidrug Resistance protein NDN12_RS03495 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NDN12_RS03495 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN12_RS03500 PF01960 ArgJ family NDN12_RS03505 PF02445 Quinolinate synthetase A protein NDN12_RS03535 PF05199 GMC oxidoreductase NDN12_RS03535 PF00732 GMC oxidoreductase NDN12_RS03545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NDN12_RS03550 PF00156 Phosphoribosyl transferase domain NDN12_RS03550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN12_RS03555 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_RS03555 PF00107 Zinc-binding dehydrogenase NDN12_RS03565 PF05199 GMC oxidoreductase NDN12_RS03565 PF00732 GMC oxidoreductase NDN12_RS03570 PF00171 Aldehyde dehydrogenase family NDN12_RS03575 PF13977 BetI-type transcriptional repressor, C-terminal NDN12_RS03575 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS03580 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_RS03585 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_RS03600 PF06039 Malate:quinone oxidoreductase (Mqo) NDN12_RS03665 PF00268 Ribonucleotide reductase, small chain NDN12_RS03675 PF03477 ATP cone domain NDN12_RS03675 PF02867 Ribonucleotide reductase, barrel domain NDN12_RS03675 PF00317 Ribonucleotide reductase, all-alpha domain NDN12_RS03680 PF00072 Response regulator receiver domain NDN12_RS03680 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS03685 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS03685 PF00672 HAMP domain NDN12_RS03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS03695 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS03700 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 NDN12_RS03705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit NDN12_RS03710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NDN12_RS03710 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NDN12_RS03720 PF10531 SLBB domain NDN12_RS03720 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NDN12_RS03720 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NDN12_RS03725 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region NDN12_RS03725 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN12_RS03725 PF00384 Molybdopterin oxidoreductase NDN12_RS03730 PF00146 NADH dehydrogenase NDN12_RS03735 PF12838 4Fe-4S dicluster domain NDN12_RS03740 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 NDN12_RS03745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN12_RS03750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN12_RS03750 PF00361 Proton-conducting membrane transporter NDN12_RS03755 PF00361 Proton-conducting membrane transporter NDN12_RS03760 PF00361 Proton-conducting membrane transporter NDN12_RS03775 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS03775 PF00593 TonB dependent receptor NDN12_RS03780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS03780 PF03466 LysR substrate binding domain NDN12_RS03785 PF00970 Oxidoreductase FAD-binding domain NDN12_RS03785 PF00175 Oxidoreductase NAD-binding domain NDN12_RS03800 PF05552 Conserved TM helix NDN12_RS03820 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS03825 PF13533 Biotin-lipoyl like NDN12_RS03845 PF08241 Methyltransferase domain NDN12_RS03850 PF06100 MCRA family NDN12_RS03860 PF00753 Metallo-beta-lactamase superfamily NDN12_RS03860 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN12_RS03870 PF01588 Putative tRNA binding domain NDN12_RS03870 PF09334 tRNA synthetases class I (M) NDN12_RS03885 PF13302 Acetyltransferase (GNAT) domain NDN12_RS03895 PF10609 NUBPL iron-transfer P-loop NTPase NDN12_RS03900 PF01048 Phosphorylase superfamily NDN12_RS03915 PF00692 dUTPase NDN12_RS03965 PF01207 Dihydrouridine synthase (Dus) NDN12_RS03980 PF00448 SRP54-type protein, GTPase domain NDN12_RS03980 PF02881 SRP54-type protein, helical bundle domain NDN12_RS03980 PF02978 Signal peptide binding domain NDN12_RS03990 PF03309 Type III pantothenate kinase NDN12_RS04000 PF01925 Sulfite exporter TauE/SafE NDN12_RS04020 PF06470 SMC proteins Flexible Hinge Domain NDN12_RS04020 PF02463 RecF/RecN/SMC N terminal domain NDN12_RS04030 PF00533 BRCA1 C Terminus (BRCT) domain NDN12_RS04030 PF01653 NAD-dependent DNA ligase adenylation domain NDN12_RS04030 PF03120 NAD-dependent DNA ligase OB-fold domain NDN12_RS04030 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NDN12_RS04030 PF12826 Helix-hairpin-helix motif NDN12_RS04040 PF00210 Ferritin-like domain NDN12_RS04050 PF07690 Major Facilitator Superfamily NDN12_RS04055 PF03594 Benzoate membrane transport protein NDN12_RS04060 PF00106 short chain dehydrogenase NDN12_RS04065 PF00970 Oxidoreductase FAD-binding domain NDN12_RS04065 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS04065 PF00175 Oxidoreductase NAD-binding domain NDN12_RS04070 PF00866 Ring hydroxylating beta subunit NDN12_RS04075 PF00355 Rieske [2Fe-2S] domain NDN12_RS04075 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_RS04080 PF03466 LysR substrate binding domain NDN12_RS04080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS04085 PF00578 AhpC/TSA family NDN12_RS04095 PF12697 Alpha/beta hydrolase family NDN12_RS04095 PF08241 Methyltransferase domain NDN12_RS04100 PF06968 Biotin and Thiamin Synthesis associated domain NDN12_RS04100 PF04055 Radical SAM superfamily NDN12_RS04100 PF00202 Aminotransferase class-III NDN12_RS04105 PF00155 Aminotransferase class I and II NDN12_RS04125 PF02472 Biopolymer transport protein ExbD/TolR NDN12_RS04130 PF02472 Biopolymer transport protein ExbD/TolR NDN12_RS04135 PF01618 MotA/TolQ/ExbB proton channel family NDN12_RS04145 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS04145 PF00593 TonB dependent receptor NDN12_RS04150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_RS04160 PF01432 Peptidase family M3 NDN12_RS04165 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS04170 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN12_RS04170 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS04175 PF00005 ABC transporter NDN12_RS04175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN12_RS04180 PF01479 S4 domain NDN12_RS04180 PF00849 RNA pseudouridylate synthase NDN12_RS04185 PF04079 Segregation and condensation complex subunit ScpB NDN12_RS04190 PF02616 Segregation and condensation protein ScpA NDN12_RS04205 PF01300 Telomere recombination NDN12_RS04210 PF04315 Elongation factor P hydroxylase NDN12_RS04215 PF02620 Large ribosomal RNA subunit accumulation protein YceD NDN12_RS04220 PF01783 Ribosomal L32p protein family NDN12_RS04225 PF00698 Acyl transferase domain NDN12_RS04235 PF00550 Phosphopantetheine attachment site NDN12_RS04240 PF04972 BON domain NDN12_RS04240 PF01476 LysM domain NDN12_RS04245 PF08543 Phosphomethylpyrimidine kinase NDN12_RS04245 PF02581 Thiamine monophosphate synthase NDN12_RS04245 PF03070 TENA/THI-4/PQQC family NDN12_RS04250 PF13419 Haloacid dehalogenase-like hydrolase NDN12_RS04255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NDN12_RS04270 PF00027 Cyclic nucleotide-binding domain NDN12_RS04270 PF01734 Patatin-like phospholipase NDN12_RS04275 PF02261 Aspartate decarboxylase NDN12_RS04280 PF01195 Peptidyl-tRNA hydrolase NDN12_RS04285 PF01386 Ribosomal L25p family NDN12_RS04290 PF14572 Phosphoribosyl synthetase-associated domain NDN12_RS04290 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NDN12_RS04315 PF08544 GHMP kinases C terminal NDN12_RS04315 PF00288 GHMP kinases N terminal domain NDN12_RS04320 PF03550 Outer membrane lipoprotein LolB NDN12_RS04330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NDN12_RS04330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NDN12_RS04330 PF01488 Shikimate / quinate 5-dehydrogenase NDN12_RS04335 PF01807 CHC2 zinc finger NDN12_RS04335 PF10410 DnaB-helicase binding domain of primase NDN12_RS04335 PF08278 DNA primase DnaG DnaB-binding NDN12_RS04335 PF08275 DNA primase catalytic core, N-terminal domain NDN12_RS04340 PF13525 Outer membrane lipoprotein NDN12_RS04345 PF00849 RNA pseudouridylate synthase NDN12_RS04345 PF01479 S4 domain NDN12_RS04350 PF02578 Multi-copper polyphenol oxidoreductase laccase NDN12_RS04355 PF03358 NADPH-dependent FMN reductase NDN12_RS04360 PF01668 SmpB protein NDN12_RS04365 PF01467 Cytidylyltransferase-like NDN12_RS04370 PF00037 4Fe-4S binding domain NDN12_RS04395 PF00795 Carbon-nitrogen hydrolase NDN12_RS04395 PF02540 NAD synthase NDN12_RS04420 PF03653 Uncharacterised protein family (UPF0093) NDN12_RS04425 PF00109 Beta-ketoacyl synthase, N-terminal domain NDN12_RS04425 PF02801 Beta-ketoacyl synthase, C-terminal domain NDN12_RS04435 PF00164 Ribosomal protein S12/S23 NDN12_RS04440 PF00177 Ribosomal protein S7p/S5e NDN12_RS04445 PF03144 Elongation factor Tu domain 2 NDN12_RS04445 PF14492 Elongation Factor G, domain II NDN12_RS04445 PF03764 Elongation factor G, domain IV NDN12_RS04445 PF00679 Elongation factor G C-terminus NDN12_RS04445 PF00009 Elongation factor Tu GTP binding domain NDN12_RS04450 PF00009 Elongation factor Tu GTP binding domain NDN12_RS04450 PF03144 Elongation factor Tu domain 2 NDN12_RS04450 PF03143 Elongation factor Tu C-terminal domain NDN12_RS04465 PF00583 Acetyltransferase (GNAT) family NDN12_RS04470 PF04376 Arginine-tRNA-protein transferase, N terminus NDN12_RS04470 PF04377 Arginine-tRNA-protein transferase, C terminus NDN12_RS04475 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NDN12_RS04480 PF13847 Methyltransferase domain NDN12_RS04480 PF10119 Predicted methyltransferase regulatory domain NDN12_RS04485 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS04490 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NDN12_RS04490 PF17854 FtsK alpha domain NDN12_RS04490 PF09397 Ftsk gamma domain NDN12_RS04490 PF01580 FtsK/SpoIIIE family NDN12_RS04505 PF03776 Septum formation topological specificity factor MinE NDN12_RS04510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NDN12_RS04515 PF03775 Septum formation inhibitor MinC, C-terminal domain NDN12_RS04525 PF01553 Acyltransferase NDN12_RS04530 PF00691 OmpA family NDN12_RS04530 PF13488 Glycine zipper NDN12_RS04535 PF13361 UvrD-like helicase C-terminal domain NDN12_RS04535 PF00580 UvrD/REP helicase N-terminal domain NDN12_RS04540 PF00692 dUTPase NDN12_RS04545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN12_RS04545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN12_RS04545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN12_RS04545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN12_RS04550 PF00696 Amino acid kinase family NDN12_RS04560 PF13230 Glutamine amidotransferases class-II NDN12_RS04565 PF01814 Hemerythrin HHE cation binding domain NDN12_RS04575 PF03658 RnfH family Ubiquitin NDN12_RS04580 PF04355 SmpA / OmlA family NDN12_RS04585 PF01475 Ferric uptake regulator family NDN12_RS04590 PF00437 Type II/IV secretion system protein NDN12_RS04595 PF00437 Type II/IV secretion system protein NDN12_RS04600 PF01168 Alanine racemase, N-terminal domain NDN12_RS04610 PF13419 Haloacid dehalogenase-like hydrolase NDN12_RS04625 PF12320 Type 5 capsule protein repressor C-terminal domain NDN12_RS04625 PF00149 Calcineurin-like phosphoesterase NDN12_RS04630 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS04650 PF01370 NAD dependent epimerase/dehydratase family NDN12_RS04650 PF08338 Domain of unknown function (DUF1731) NDN12_RS04655 PF01266 FAD dependent oxidoreductase NDN12_RS04660 PF00490 Delta-aminolevulinic acid dehydratase NDN12_RS04665 PF03061 Thioesterase superfamily NDN12_RS04670 PF08241 Methyltransferase domain NDN12_RS04675 PF00355 Rieske [2Fe-2S] domain NDN12_RS04675 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_RS04680 PF00866 Ring hydroxylating beta subunit NDN12_RS04685 PF00175 Oxidoreductase NAD-binding domain NDN12_RS04685 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS04685 PF00970 Oxidoreductase FAD-binding domain NDN12_RS04690 PF07690 Major Facilitator Superfamily NDN12_RS04700 PF00529 HlyD membrane-fusion protein of T1SS NDN12_RS04700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_RS04705 PF07690 Major Facilitator Superfamily NDN12_RS04715 PF13356 Arm DNA-binding domain NDN12_RS04715 PF00589 Phage integrase family NDN12_RS04775 PF07728 AAA domain (dynein-related subfamily) NDN12_RS04775 PF12102 Domain of unknown function (DUF3578) NDN12_RS04775 PF12102 Domain of unknown function (DUF3578) NDN12_RS04775 PF07728 AAA domain (dynein-related subfamily) NDN12_RS04800 PF00196 Bacterial regulatory proteins, luxR family NDN12_RS04805 PF00171 Aldehyde dehydrogenase family NDN12_RS04810 PF01593 Flavin containing amine oxidoreductase NDN12_RS04815 PF05658 Head domain of trimeric autotransporter adhesin NDN12_RS04815 PF03895 YadA-like membrane anchor domain NDN12_RS04815 PF13018 Extended Signal Peptide of Type V secretion system NDN12_RS04815 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_RS04820 PF00691 OmpA family NDN12_RS04820 PF04355 SmpA / OmlA family NDN12_RS04830 PF00171 Aldehyde dehydrogenase family NDN12_RS04860 PF12146 Serine aminopeptidase, S33 NDN12_RS04865 PF00106 short chain dehydrogenase NDN12_RS04875 PF08359 YsiA-like protein, C-terminal region NDN12_RS04875 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS04885 PF01266 FAD dependent oxidoreductase NDN12_RS04910 PF05721 Phytanoyl-CoA dioxygenase (PhyH) NDN12_RS04920 PF00561 alpha/beta hydrolase fold NDN12_RS04925 PF00743 Flavin-binding monooxygenase-like NDN12_RS04950 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN12_RS04950 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN12_RS04955 PF13953 PapC C-terminal domain NDN12_RS04955 PF13954 PapC N-terminal domain NDN12_RS04955 PF00577 Outer membrane usher protein NDN12_RS04965 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN12_RS04965 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN12_RS04970 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS04970 PF12833 Helix-turn-helix domain NDN12_RS04975 PF00756 Putative esterase NDN12_RS04975 PF01476 LysM domain NDN12_RS04995 PF01638 HxlR-like helix-turn-helix NDN12_RS05005 PF13417 Glutathione S-transferase, N-terminal domain NDN12_RS05020 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS05020 PF00155 Aminotransferase class I and II NDN12_RS05025 PF00596 Class II Aldolase and Adducin N-terminal domain NDN12_RS05030 PF00701 Dihydrodipicolinate synthetase family NDN12_RS05035 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS05035 PF12833 Helix-turn-helix domain NDN12_RS05040 PF00106 short chain dehydrogenase NDN12_RS05045 PF06314 Acetoacetate decarboxylase (ADC) NDN12_RS05050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_RS05050 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS05060 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS05065 PF00106 short chain dehydrogenase NDN12_RS05070 PF00743 Flavin-binding monooxygenase-like NDN12_RS05075 PF07859 alpha/beta hydrolase fold NDN12_RS05080 PF02321 Outer membrane efflux protein NDN12_RS05085 PF00873 AcrB/AcrD/AcrF family NDN12_RS05090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_RS05100 PF00376 MerR family regulatory protein NDN12_RS05100 PF09278 MerR, DNA binding NDN12_RS05105 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS05105 PF07660 Secretin and TonB N terminus short domain NDN12_RS05105 PF00593 TonB dependent receptor NDN12_RS05115 PF00664 ABC transporter transmembrane region NDN12_RS05115 PF00005 ABC transporter NDN12_RS05115 PF08021 Siderophore-interacting FAD-binding domain NDN12_RS05115 PF04954 Siderophore-interacting protein NDN12_RS05120 PF00005 ABC transporter NDN12_RS05125 PF01032 FecCD transport family NDN12_RS05130 PF01032 FecCD transport family NDN12_RS05135 PF00005 ABC transporter NDN12_RS05140 PF01497 Periplasmic binding protein NDN12_RS05145 PF00593 TonB dependent receptor NDN12_RS05145 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS05150 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_RS05150 PF04717 Type VI secretion system, phage-baseplate injector NDN12_RS05150 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_RS05195 PF02321 Outer membrane efflux protein NDN12_RS05200 PF00873 AcrB/AcrD/AcrF family NDN12_RS05205 PF13533 Biotin-lipoyl like NDN12_RS05210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS05210 PF03466 LysR substrate binding domain NDN12_RS05215 PF07995 Glucose / Sorbosone dehydrogenase NDN12_RS05230 PF07690 Major Facilitator Superfamily NDN12_RS05235 PF12833 Helix-turn-helix domain NDN12_RS05240 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN12_RS05240 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN12_RS05245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_RS05245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_RS05255 PF01425 Amidase NDN12_RS05260 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS05270 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_RS05270 PF00355 Rieske [2Fe-2S] domain NDN12_RS05285 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS05285 PF00175 Oxidoreductase NAD-binding domain NDN12_RS05290 PF01613 Flavin reductase like domain NDN12_RS05295 PF02311 AraC-like ligand binding domain NDN12_RS05295 PF12833 Helix-turn-helix domain NDN12_RS05300 PF01179 Copper amine oxidase, enzyme domain NDN12_RS05300 PF07833 Copper amine oxidase N-terminal domain NDN12_RS05300 PF02727 Copper amine oxidase, N2 domain NDN12_RS05300 PF02728 Copper amine oxidase, N3 domain NDN12_RS05310 PF05199 GMC oxidoreductase NDN12_RS05310 PF00732 GMC oxidoreductase NDN12_RS05315 PF00171 Aldehyde dehydrogenase family NDN12_RS05320 PF12146 Serine aminopeptidase, S33 NDN12_RS05325 PF02803 Thiolase, C-terminal domain NDN12_RS05325 PF00108 Thiolase, N-terminal domain NDN12_RS05330 PF01144 Coenzyme A transferase NDN12_RS05335 PF01144 Coenzyme A transferase NDN12_RS05340 PF00775 Dioxygenase NDN12_RS05340 PF04444 Catechol dioxygenase N terminus NDN12_RS05345 PF02426 Muconolactone delta-isomerase NDN12_RS05350 PF13378 Enolase C-terminal domain-like NDN12_RS05350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NDN12_RS05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS05355 PF03466 LysR substrate binding domain NDN12_RS05360 PF03573 outer membrane porin, OprD family NDN12_RS05370 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS05370 PF00593 TonB dependent receptor NDN12_RS05390 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS05390 PF07660 Secretin and TonB N terminus short domain NDN12_RS05390 PF00593 TonB dependent receptor NDN12_RS05400 PF08281 Sigma-70, region 4 NDN12_RS05400 PF04542 Sigma-70 region 2 NDN12_RS05405 PF13533 Biotin-lipoyl like NDN12_RS05410 PF00873 AcrB/AcrD/AcrF family NDN12_RS05415 PF00873 AcrB/AcrD/AcrF family NDN12_RS05420 PF02321 Outer membrane efflux protein NDN12_RS05425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS05425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS05425 PF09317 Domain of unknown function (DUF1974) NDN12_RS05450 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS05460 PF00106 short chain dehydrogenase NDN12_RS05465 PF00390 Malic enzyme, N-terminal domain NDN12_RS05465 PF03949 Malic enzyme, NAD binding domain NDN12_RS05475 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN12_RS05475 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN12_RS05480 PF00202 Aminotransferase class-III NDN12_RS05485 PF04958 Arginine N-succinyltransferase beta subunit NDN12_RS05490 PF00171 Aldehyde dehydrogenase family NDN12_RS05495 PF04996 Succinylarginine dihydrolase NDN12_RS05500 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NDN12_RS05505 PF00324 Amino acid permease NDN12_RS05515 PF04403 Paraquat-inducible protein A NDN12_RS05520 PF02470 MlaD protein NDN12_RS05530 PF00501 AMP-binding enzyme NDN12_RS05530 PF13193 AMP-binding enzyme C-terminal domain NDN12_RS05530 PF00668 Condensation domain NDN12_RS05530 PF00550 Phosphopantetheine attachment site NDN12_RS05530 PF00975 Thioesterase domain NDN12_RS05535 PF01569 PAP2 superfamily NDN12_RS05555 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NDN12_RS05565 PF07724 AAA domain (Cdc48 subfamily) NDN12_RS05565 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_RS05565 PF17871 AAA lid domain NDN12_RS05565 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_RS05575 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 NDN12_RS05580 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NDN12_RS05595 PF05947 Type VI secretion system, TssF NDN12_RS05610 PF14331 ImcF-related N-terminal domain NDN12_RS05610 PF06744 Type VI secretion protein IcmF C-terminal NDN12_RS05610 PF06761 Intracellular multiplication and human macrophage-killing NDN12_RS05620 PF13488 Glycine zipper NDN12_RS05620 PF00691 OmpA family NDN12_RS05635 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS05640 PF00005 ABC transporter NDN12_RS05640 PF03459 TOBE domain NDN12_RS05650 PF01545 Cation efflux family NDN12_RS05650 PF16916 Dimerisation domain of Zinc Transporter NDN12_RS05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS05660 PF03466 LysR substrate binding domain NDN12_RS05665 PF01810 LysE type translocator NDN12_RS05670 PF00266 Aminotransferase class-V NDN12_RS05680 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS05685 PF00581 Rhodanese-like domain NDN12_RS05690 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NDN12_RS05695 PF00005 ABC transporter NDN12_RS05700 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS05705 PF02668 Taurine catabolism dioxygenase TauD, TfdA family NDN12_RS05710 PF12833 Helix-turn-helix domain NDN12_RS05710 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS05715 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal NDN12_RS05715 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal NDN12_RS05740 PF00582 Universal stress protein family NDN12_RS05760 PF01327 Polypeptide deformylase NDN12_RS05765 PF04960 Glutaminase NDN12_RS05785 PF02607 B12 binding domain NDN12_RS05785 PF02965 Vitamin B12 dependent methionine synthase, activation domain NDN12_RS05785 PF00809 Pterin binding enzyme NDN12_RS05785 PF02574 Homocysteine S-methyltransferase NDN12_RS05785 PF02310 B12 binding domain NDN12_RS05790 PF01384 Phosphate transporter family NDN12_RS05800 PF18073 Rubredoxin metal binding domain NDN12_RS05805 PF01235 Sodium:alanine symporter family NDN12_RS05810 PF00324 Amino acid permease NDN12_RS05820 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NDN12_RS05820 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NDN12_RS05825 PF01678 Diaminopimelate epimerase NDN12_RS05830 PF01810 LysE type translocator NDN12_RS05835 PF00589 Phage integrase family NDN12_RS05835 PF02899 Phage integrase, N-terminal SAM-like domain NDN12_RS05840 PF01012 Electron transfer flavoprotein domain NDN12_RS05845 PF00766 Electron transfer flavoprotein FAD-binding domain NDN12_RS05845 PF01012 Electron transfer flavoprotein domain NDN12_RS05855 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN12_RS05855 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN12_RS05880 PF00266 Aminotransferase class-V NDN12_RS05895 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NDN12_RS05910 PF02687 FtsX-like permease family NDN12_RS05910 PF12704 MacB-like periplasmic core domain NDN12_RS05915 PF00005 ABC transporter NDN12_RS05920 PF00753 Metallo-beta-lactamase superfamily NDN12_RS05920 PF03772 Competence protein NDN12_RS05920 PF13567 Domain of unknown function (DUF4131) NDN12_RS05930 PF01343 Peptidase family S49 NDN12_RS05930 PF06965 Na+/H+ antiporter 1 NDN12_RS05940 PF00551 Formyl transferase NDN12_RS05945 PF02769 AIR synthase related protein, C-terminal domain NDN12_RS05945 PF00586 AIR synthase related protein, N-terminal domain NDN12_RS05950 PF01594 AI-2E family transporter NDN12_RS05955 PF00308 Bacterial dnaA protein NDN12_RS05955 PF08299 Bacterial dnaA protein helix-turn-helix NDN12_RS05955 PF11638 DnaA N-terminal domain NDN12_RS05985 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN12_RS05985 PF00588 SpoU rRNA Methylase family NDN12_RS05990 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NDN12_RS06000 PF00691 OmpA family NDN12_RS06005 PF04052 TolB amino-terminal domain NDN12_RS06005 PF07676 WD40-like Beta Propeller Repeat NDN12_RS06015 PF02472 Biopolymer transport protein ExbD/TolR NDN12_RS06020 PF01618 MotA/TolQ/ExbB proton channel family NDN12_RS06025 PF03061 Thioesterase superfamily NDN12_RS06035 PF17864 RuvB AAA lid domain NDN12_RS06035 PF05491 RuvB C-terminal winged helix domain NDN12_RS06035 PF05496 Holliday junction DNA helicase RuvB P-loop domain NDN12_RS06040 PF01330 RuvA N terminal domain NDN12_RS06040 PF07499 RuvA, C-terminal domain NDN12_RS06045 PF01966 HD domain NDN12_RS06055 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NDN12_RS06055 PF02769 AIR synthase related protein, C-terminal domain NDN12_RS06055 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NDN12_RS06060 PF07690 Major Facilitator Superfamily NDN12_RS06075 PF01784 NIF3 (NGG1p interacting factor 3) NDN12_RS06080 PF02595 Glycerate kinase family NDN12_RS06085 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS06090 PF00293 NUDIX domain NDN12_RS06090 PF01467 Cytidylyltransferase-like NDN12_RS06105 PF00578 AhpC/TSA family NDN12_RS06110 PF06508 Queuosine biosynthesis protein QueC NDN12_RS06120 PF06508 Queuosine biosynthesis protein QueC NDN12_RS06125 PF04055 Radical SAM superfamily NDN12_RS06130 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS06130 PF14602 Hexapeptide repeat of succinyl-transferase NDN12_RS06130 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal NDN12_RS06140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS06140 PF03466 LysR substrate binding domain NDN12_RS06145 PF00005 ABC transporter NDN12_RS06145 PF12857 TOBE-like domain NDN12_RS06150 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS06155 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS06170 PF01063 Amino-transferase class IV NDN12_RS06175 PF02618 YceG-like family NDN12_RS06180 PF02223 Thymidylate kinase NDN12_RS06190 PF02910 Fumarate reductase flavoprotein C-term NDN12_RS06190 PF00890 FAD binding domain NDN12_RS06195 PF13180 PDZ domain NDN12_RS06205 PF00679 Elongation factor G C-terminus NDN12_RS06205 PF00009 Elongation factor Tu GTP binding domain NDN12_RS06205 PF03144 Elongation factor Tu domain 2 NDN12_RS06205 PF06421 GTP-binding protein LepA C-terminus NDN12_RS06210 PF10502 Signal peptidase, peptidase S26 NDN12_RS06220 PF00035 Double-stranded RNA binding motif NDN12_RS06220 PF14622 Ribonuclease-III-like NDN12_RS06225 PF01926 50S ribosome-binding GTPase NDN12_RS06225 PF07650 KH domain NDN12_RS06235 PF11967 Recombination protein O N terminal NDN12_RS06235 PF02565 Recombination protein O C terminal NDN12_RS06240 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NDN12_RS06245 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NDN12_RS06260 PF01743 Poly A polymerase head domain NDN12_RS06260 PF12627 Probable RNA and SrmB- binding site of polymerase A NDN12_RS06265 PF03949 Malic enzyme, NAD binding domain NDN12_RS06265 PF00390 Malic enzyme, N-terminal domain NDN12_RS06265 PF01515 Phosphate acetyl/butaryl transferase NDN12_RS06270 PF00563 EAL domain NDN12_RS06270 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS06270 PF03707 Bacterial signalling protein N terminal repeat NDN12_RS06275 PF04452 RNA methyltransferase NDN12_RS06280 PF02219 Methylenetetrahydrofolate reductase NDN12_RS06285 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NDN12_RS06285 PF05221 S-adenosyl-L-homocysteine hydrolase NDN12_RS06295 PF16123 Hydroxyacylglutathione hydrolase C-terminus NDN12_RS06295 PF00753 Metallo-beta-lactamase superfamily NDN12_RS06310 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS06315 PF09383 NIL domain NDN12_RS06315 PF00005 ABC transporter NDN12_RS06320 PF03180 NLPA lipoprotein NDN12_RS06325 PF02843 Phosphoribosylglycinamide synthetase, C domain NDN12_RS06325 PF02844 Phosphoribosylglycinamide synthetase, N domain NDN12_RS06325 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NDN12_RS06330 PF02142 MGS-like domain NDN12_RS06330 PF01808 AICARFT/IMPCHase bienzyme NDN12_RS06335 PF02954 Bacterial regulatory protein, Fis family NDN12_RS06355 PF01134 Glucose inhibited division protein A NDN12_RS06355 PF13932 GidA associated domain NDN12_RS06360 PF00893 Small Multidrug Resistance protein NDN12_RS06370 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS06370 PF12833 Helix-turn-helix domain NDN12_RS06380 PF02424 ApbE family NDN12_RS06390 PF00175 Oxidoreductase NAD-binding domain NDN12_RS06390 PF00258 Flavodoxin NDN12_RS06390 PF00667 FAD binding domain NDN12_RS06405 PF00593 TonB dependent receptor NDN12_RS06405 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS06415 PF00860 Permease family NDN12_RS06420 PF00962 Adenosine/AMP deaminase NDN12_RS06425 PF01292 Prokaryotic cytochrome b561 NDN12_RS06435 PF01351 Ribonuclease HII NDN12_RS06440 PF02599 Global regulator protein family NDN12_RS06445 PF01842 ACT domain NDN12_RS06445 PF00696 Amino acid kinase family NDN12_RS06445 PF13840 ACT domain NDN12_RS06450 PF01411 tRNA synthetases class II (A) NDN12_RS06450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NDN12_RS06450 PF02272 DHHA1 domain NDN12_RS06455 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN12_RS06455 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN12_RS06465 PF00583 Acetyltransferase (GNAT) family NDN12_RS06470 PF13393 Histidyl-tRNA synthetase NDN12_RS06475 PF00709 Adenylosuccinate synthetase NDN12_RS06490 PF14403 Circularly permuted ATP-grasp type 2 NDN12_RS06500 PF08379 Bacterial transglutaminase-like N-terminal region NDN12_RS06500 PF01841 Transglutaminase-like superfamily NDN12_RS06515 PF00842 Alanine racemase, C-terminal domain NDN12_RS06515 PF01168 Alanine racemase, N-terminal domain NDN12_RS06520 PF00772 DnaB-like helicase N terminal domain NDN12_RS06520 PF03796 DnaB-like helicase C terminal domain NDN12_RS06525 PF01638 HxlR-like helix-turn-helix NDN12_RS06530 PF02525 Flavodoxin-like fold NDN12_RS06535 PF03948 Ribosomal protein L9, C-terminal domain NDN12_RS06535 PF01281 Ribosomal protein L9, N-terminal domain NDN12_RS06540 PF01084 Ribosomal protein S18 NDN12_RS06545 PF01250 Ribosomal protein S6 NDN12_RS06555 PF01040 UbiA prenyltransferase family NDN12_RS06560 PF03626 Prokaryotic Cytochrome C oxidase subunit IV NDN12_RS06565 PF00510 Cytochrome c oxidase subunit III NDN12_RS06570 PF00115 Cytochrome C and Quinol oxidase polypeptide I NDN12_RS06575 PF06481 COX Aromatic Rich Motif NDN12_RS06575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NDN12_RS06585 PF02896 PEP-utilising enzyme, TIM barrel domain NDN12_RS06585 PF00391 PEP-utilising enzyme, mobile domain NDN12_RS06585 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NDN12_RS06590 PF03618 Kinase/pyrophosphorylase NDN12_RS06595 PF00563 EAL domain NDN12_RS06595 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS06595 PF03707 Bacterial signalling protein N terminal repeat NDN12_RS06600 PF00296 Luciferase-like monooxygenase NDN12_RS06610 PF01479 S4 domain NDN12_RS06610 PF00849 RNA pseudouridylate synthase NDN12_RS06615 PF00583 Acetyltransferase (GNAT) family NDN12_RS06625 PF00849 RNA pseudouridylate synthase NDN12_RS06625 PF01479 S4 domain NDN12_RS06635 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NDN12_RS06640 PF08676 MutL C terminal dimerisation domain NDN12_RS06640 PF01119 DNA mismatch repair protein, C-terminal domain NDN12_RS06650 PF17209 Hfq protein NDN12_RS06665 PF02525 Flavodoxin-like fold NDN12_RS06670 PF00881 Nitroreductase family NDN12_RS06675 PF00149 Calcineurin-like phosphoesterase NDN12_RS06680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN12_RS06685 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN12_RS06685 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NDN12_RS06690 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN12_RS06690 PF00117 Glutamine amidotransferase class-I NDN12_RS06700 PF14493 Helix-turn-helix domain NDN12_RS06700 PF05970 PIF1-like helicase NDN12_RS06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS06720 PF03466 LysR substrate binding domain NDN12_RS06725 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN12_RS06730 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_RS06735 PF07859 alpha/beta hydrolase fold NDN12_RS06740 PF00355 Rieske [2Fe-2S] domain NDN12_RS06740 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NDN12_RS06745 PF00171 Aldehyde dehydrogenase family NDN12_RS06750 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS06750 PF00970 Oxidoreductase FAD-binding domain NDN12_RS06750 PF00175 Oxidoreductase NAD-binding domain NDN12_RS06755 PF00155 Aminotransferase class I and II NDN12_RS06760 PF02080 TrkA-C domain NDN12_RS06760 PF06826 Predicted Permease Membrane Region NDN12_RS06765 PF03895 YadA-like membrane anchor domain NDN12_RS06765 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_RS06765 PF13018 Extended Signal Peptide of Type V secretion system NDN12_RS06765 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_RS06765 PF05658 Head domain of trimeric autotransporter adhesin NDN12_RS06765 PF13018 Extended Signal Peptide of Type V secretion system NDN12_RS06765 PF05658 Head domain of trimeric autotransporter adhesin NDN12_RS06765 PF03895 YadA-like membrane anchor domain NDN12_RS06770 PF00691 OmpA family NDN12_RS06770 PF04355 SmpA / OmlA family NDN12_RS06775 PF09339 IclR helix-turn-helix domain NDN12_RS06775 PF01614 Bacterial transcriptional regulator NDN12_RS06780 PF01144 Coenzyme A transferase NDN12_RS06785 PF01144 Coenzyme A transferase NDN12_RS06790 PF02803 Thiolase, C-terminal domain NDN12_RS06790 PF00108 Thiolase, N-terminal domain NDN12_RS06795 PF10397 Adenylosuccinate lyase C-terminus NDN12_RS06795 PF00206 Lyase NDN12_RS06800 PF00561 alpha/beta hydrolase fold NDN12_RS06805 PF07690 Major Facilitator Superfamily NDN12_RS06810 PF02627 Carboxymuconolactone decarboxylase family NDN12_RS06815 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal NDN12_RS06815 PF00775 Dioxygenase NDN12_RS06820 PF00775 Dioxygenase NDN12_RS06825 PF01487 Type I 3-dehydroquinase NDN12_RS06830 PF05048 Periplasmic copper-binding protein (NosD) NDN12_RS06835 PF04966 Carbohydrate-selective porin, OprB family NDN12_RS06840 PF01011 PQQ enzyme repeat NDN12_RS06840 PF13360 PQQ-like domain NDN12_RS06850 PF00576 HIUase/Transthyretin family NDN12_RS06855 PF00860 Permease family NDN12_RS06865 PF01494 FAD binding domain NDN12_RS06870 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS06870 PF07729 FCD domain NDN12_RS06875 PF03561 Allantoicase repeat NDN12_RS06880 PF04115 Ureidoglycolate lyase NDN12_RS06890 PF09084 NMT1/THI5 like NDN12_RS06895 PF00005 ABC transporter NDN12_RS06900 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS06905 PF01979 Amidohydrolase family NDN12_RS06920 PF01872 RibD C-terminal domain NDN12_RS06930 PF03466 LysR substrate binding domain NDN12_RS06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS06935 PF00355 Rieske [2Fe-2S] domain NDN12_RS06940 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS06940 PF07702 UTRA domain NDN12_RS06945 PF05962 HutD NDN12_RS06950 PF17391 Urocanase N-terminal domain NDN12_RS06950 PF01175 Urocanase Rossmann-like domain NDN12_RS06950 PF17392 Urocanase C-terminal domain NDN12_RS06955 PF00221 Aromatic amino acid lyase NDN12_RS06960 PF00324 Amino acid permease NDN12_RS06965 PF01979 Amidohydrolase family NDN12_RS06970 PF00491 Arginase family NDN12_RS06975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN12_RS06975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN12_RS06990 PF12833 Helix-turn-helix domain NDN12_RS06990 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS07000 PF00155 Aminotransferase class I and II NDN12_RS07000 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS07005 PF02322 Cytochrome bd terminal oxidase subunit II NDN12_RS07010 PF01654 Cytochrome bd terminal oxidase subunit I NDN12_RS07025 PF00384 Molybdopterin oxidoreductase NDN12_RS07030 PF02634 FdhD/NarQ family NDN12_RS07035 PF04261 Dyp-type peroxidase family NDN12_RS07045 PF02321 Outer membrane efflux protein NDN12_RS07050 PF00873 AcrB/AcrD/AcrF family NDN12_RS07055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_RS07055 PF00529 HlyD membrane-fusion protein of T1SS NDN12_RS07060 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS07060 PF00072 Response regulator receiver domain NDN12_RS07070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS07070 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS07070 PF00672 HAMP domain NDN12_RS07075 PF00296 Luciferase-like monooxygenase NDN12_RS07080 PF00248 Aldo/keto reductase family NDN12_RS07090 PF16868 NMT1-like family NDN12_RS07100 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS07115 PF00005 ABC transporter NDN12_RS07120 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS07130 PF00158 Sigma-54 interaction domain NDN12_RS07135 PF03459 TOBE domain NDN12_RS07140 PF00005 ABC transporter NDN12_RS07150 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS07150 PF17932 Tetracyclin repressor-like, C-terminal domain NDN12_RS07165 PF00106 short chain dehydrogenase NDN12_RS07170 PF00743 Flavin-binding monooxygenase-like NDN12_RS07175 PF04072 Leucine carboxyl methyltransferase NDN12_RS07180 PF01435 Peptidase family M48 NDN12_RS07185 PF00027 Cyclic nucleotide-binding domain NDN12_RS07185 PF13545 Crp-like helix-turn-helix domain NDN12_RS07190 PF02566 OsmC-like protein NDN12_RS07200 PF17871 AAA lid domain NDN12_RS07200 PF02861 Clp amino terminal domain, pathogenicity island component NDN12_RS07200 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_RS07200 PF07724 AAA domain (Cdc48 subfamily) NDN12_RS07200 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_RS07210 PF10672 S-adenosylmethionine-dependent methyltransferase NDN12_RS07210 PF02926 THUMP domain NDN12_RS07210 PF01170 Putative RNA methylase family UPF0020 NDN12_RS07220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN12_RS07220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN12_RS07225 PF01979 Amidohydrolase family NDN12_RS07235 PF01389 OmpA-like transmembrane domain NDN12_RS07235 PF00691 OmpA family NDN12_RS07250 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_RS07250 PF04717 Type VI secretion system, phage-baseplate injector NDN12_RS07250 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_RS07285 PF02390 Putative methyltransferase NDN12_RS07295 PF00043 Glutathione S-transferase, C-terminal domain NDN12_RS07295 PF02798 Glutathione S-transferase, N-terminal domain NDN12_RS07305 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS07305 PF13192 Thioredoxin domain NDN12_RS07325 PF00487 Fatty acid desaturase NDN12_RS07335 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN12_RS07335 PF00578 AhpC/TSA family NDN12_RS07340 PF11898 Domain of unknown function (DUF3418) NDN12_RS07340 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NDN12_RS07340 PF04408 Helicase associated domain (HA2) NDN12_RS07340 PF00271 Helicase conserved C-terminal domain NDN12_RS07340 PF00270 DEAD/DEAH box helicase NDN12_RS07345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NDN12_RS07345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NDN12_RS07355 PF04055 Radical SAM superfamily NDN12_RS07360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN12_RS07360 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS07375 PF05036 Sporulation related domain NDN12_RS07375 PF03330 Lytic transglycolase NDN12_RS07380 PF13406 Transglycosylase SLT domain NDN12_RS07385 PF01098 Cell cycle protein NDN12_RS07395 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NDN12_RS07395 PF14489 QueF-like protein NDN12_RS07400 PF01061 ABC-2 type transporter NDN12_RS07405 PF00005 ABC transporter NDN12_RS07435 PF00464 Serine hydroxymethyltransferase NDN12_RS07450 PF02785 Biotin carboxylase C-terminal domain NDN12_RS07450 PF00289 Biotin carboxylase, N-terminal domain NDN12_RS07450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_RS07455 PF08753 NikR C terminal nickel binding domain NDN12_RS07455 PF01402 Ribbon-helix-helix protein, copG family NDN12_RS07460 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_RS07475 PF00005 ABC transporter NDN12_RS07485 PF00037 4Fe-4S binding domain NDN12_RS07490 PF16325 Peptidase family U32 C-terminal domain NDN12_RS07490 PF01136 Peptidase family U32 NDN12_RS07500 PF05360 yiaA/B two helix domain NDN12_RS07505 PF00472 RF-1 domain NDN12_RS07505 PF03462 PCRF domain NDN12_RS07510 PF13847 Methyltransferase domain NDN12_RS07510 PF17827 PrmC N-terminal domain NDN12_RS07525 PF00106 short chain dehydrogenase NDN12_RS07535 PF01613 Flavin reductase like domain NDN12_RS07540 PF12833 Helix-turn-helix domain NDN12_RS07540 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS07545 PF00561 alpha/beta hydrolase fold NDN12_RS07550 PF03280 Proteobacterial lipase chaperone protein NDN12_RS07560 PF00899 ThiF family NDN12_RS07565 PF03109 ABC1 family NDN12_RS07570 PF02152 Dihydroneopterin aldolase NDN12_RS07590 PF03232 Ubiquinone biosynthesis protein COQ7 NDN12_RS07595 PF07690 Major Facilitator Superfamily NDN12_RS07600 PF17243 POTRA domain TamA domain 1 NDN12_RS07600 PF01103 Surface antigen NDN12_RS07600 PF07244 Surface antigen variable number repeat NDN12_RS07625 PF00330 Aconitase family (aconitate hydratase) NDN12_RS07625 PF11791 Aconitate B N-terminal domain NDN12_RS07625 PF06434 Aconitate hydratase 2 N-terminus NDN12_RS07635 PF00939 Sodium:sulfate symporter transmembrane region NDN12_RS07640 PF00027 Cyclic nucleotide-binding domain NDN12_RS07640 PF00520 Ion transport protein NDN12_RS07645 PF01032 FecCD transport family NDN12_RS07650 PF01032 FecCD transport family NDN12_RS07655 PF00005 ABC transporter NDN12_RS07660 PF01497 Periplasmic binding protein NDN12_RS07665 PF09997 Predicted membrane protein (DUF2238) NDN12_RS07670 PF07690 Major Facilitator Superfamily NDN12_RS07680 PF02677 Epoxyqueuosine reductase QueH NDN12_RS07685 PF03466 LysR substrate binding domain NDN12_RS07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS07690 PF04284 Protein of unknown function (DUF441) NDN12_RS07705 PF00970 Oxidoreductase FAD-binding domain NDN12_RS07705 PF00175 Oxidoreductase NAD-binding domain NDN12_RS07710 PF18389 TrmO C-terminal domain NDN12_RS07710 PF01980 tRNA-methyltransferase O NDN12_RS07715 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN12_RS07715 PF00437 Type II/IV secretion system protein NDN12_RS07725 PF00072 Response regulator receiver domain NDN12_RS07725 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS07730 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS07730 PF08521 Two-component sensor kinase N-terminal NDN12_RS07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS07740 PF00293 NUDIX domain NDN12_RS07750 PF14814 Bifunctional transglycosylase second domain NDN12_RS07750 PF00912 Transglycosylase NDN12_RS07750 PF00905 Penicillin binding protein transpeptidase domain NDN12_RS07755 PF01513 ATP-NAD kinase NDN12_RS07760 PF07023 Protein of unknown function (DUF1315) NDN12_RS07765 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_RS07765 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_RS07765 PF13296 Putative type VI secretion system Rhs element Vgr NDN12_RS07765 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) NDN12_RS07765 PF04717 Type VI secretion system, phage-baseplate injector NDN12_RS07765 PF04717 Type VI secretion system, phage-baseplate injector NDN12_RS07780 PF02885 Glycosyl transferase family, helical bundle domain NDN12_RS07780 PF00591 Glycosyl transferase family, a/b domain NDN12_RS07785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS07785 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS07785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS07800 PF01842 ACT domain NDN12_RS07800 PF01817 Chorismate mutase type II NDN12_RS07800 PF00800 Prephenate dehydratase NDN12_RS07805 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NDN12_RS07815 PF07687 Peptidase dimerisation domain NDN12_RS07815 PF01546 Peptidase family M20/M25/M40 NDN12_RS07820 PF01137 RNA 3'-terminal phosphate cyclase NDN12_RS07820 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain NDN12_RS07835 PF01139 tRNA-splicing ligase RtcB NDN12_RS07840 PF00753 Metallo-beta-lactamase superfamily NDN12_RS07845 PF06956 Regulator of RNA terminal phosphate cyclase NDN12_RS07845 PF00158 Sigma-54 interaction domain NDN12_RS07860 PF03883 Peroxide stress protein YaaA NDN12_RS07880 PF05690 Thiazole biosynthesis protein ThiG NDN12_RS07890 PF04241 Protein of unknown function (DUF423) NDN12_RS07895 PF04542 Sigma-70 region 2 NDN12_RS07895 PF00140 Sigma-70 factor, region 1.2 NDN12_RS07895 PF04545 Sigma-70, region 4 NDN12_RS07905 PF00313 'Cold-shock' DNA-binding domain NDN12_RS07910 PF00271 Helicase conserved C-terminal domain NDN12_RS07910 PF00270 DEAD/DEAH box helicase NDN12_RS07915 PF01116 Fructose-bisphosphate aldolase class-II NDN12_RS07920 PF00639 PPIC-type PPIASE domain NDN12_RS07920 PF09312 SurA N-terminal domain NDN12_RS07925 PF04453 LPS transport system D NDN12_RS07925 PF03968 OstA-like protein NDN12_RS07930 PF01636 Phosphotransferase enzyme family NDN12_RS07935 PF00483 Nucleotidyl transferase NDN12_RS07940 PF02527 rRNA small subunit methyltransferase G NDN12_RS07945 PF13614 AAA domain NDN12_RS07950 PF02195 ParB-like nuclease domain NDN12_RS07950 PF17762 HTH domain found in ParB protein NDN12_RS07955 PF01618 MotA/TolQ/ExbB proton channel family NDN12_RS07965 PF00664 ABC transporter transmembrane region NDN12_RS07965 PF00005 ABC transporter NDN12_RS07970 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NDN12_RS07975 PF02348 Cytidylyltransferase NDN12_RS07980 PF09115 DNA polymerase III, delta subunit, C terminal NDN12_RS08000 PF01026 TatD related DNase NDN12_RS08010 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS08020 PF11612 Type II secretion system (T2SS), protein J NDN12_RS08020 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS08025 PF03934 Type II secretion system (T2SS), protein K NDN12_RS08035 PF03167 Uracil DNA glycosylase superfamily NDN12_RS08045 PF14437 MafB19-like deaminase NDN12_RS08055 PF02224 Cytidylate kinase NDN12_RS08060 PF00575 S1 RNA binding domain NDN12_RS08065 PF00216 Bacterial DNA-binding protein NDN12_RS08090 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NDN12_RS08095 PF03956 Lysine exporter LysO NDN12_RS08100 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS08105 PF07690 Major Facilitator Superfamily NDN12_RS08110 PF00743 Flavin-binding monooxygenase-like NDN12_RS08120 PF03969 AFG1-like ATPase NDN12_RS08125 PF01274 Malate synthase NDN12_RS08160 PF05525 Branched-chain amino acid transport protein NDN12_RS08165 PF00557 Metallopeptidase family M24 NDN12_RS08170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS08170 PF03466 LysR substrate binding domain NDN12_RS08175 PF02824 TGS domain NDN12_RS08175 PF04607 Region found in RelA / SpoT proteins NDN12_RS08175 PF13291 ACT domain NDN12_RS08185 PF00462 Glutaredoxin NDN12_RS08190 PF00202 Aminotransferase class-III NDN12_RS08195 PF00571 CBS domain NDN12_RS08220 PF00448 SRP54-type protein, GTPase domain NDN12_RS08220 PF02881 SRP54-type protein, helical bundle domain NDN12_RS08255 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS08255 PF07660 Secretin and TonB N terminus short domain NDN12_RS08255 PF00593 TonB dependent receptor NDN12_RS08265 PF08173 Membrane bound YbgT-like protein NDN12_RS08270 PF02322 Cytochrome bd terminal oxidase subunit II NDN12_RS08275 PF01654 Cytochrome bd terminal oxidase subunit I NDN12_RS08295 PF00294 pfkB family carbohydrate kinase NDN12_RS08305 PF05193 Peptidase M16 inactive domain NDN12_RS08305 PF08367 Peptidase M16C associated NDN12_RS08305 PF00675 Insulinase (Peptidase family M16) NDN12_RS08310 PF02253 Phospholipase A1 NDN12_RS08320 PF02386 Cation transport protein NDN12_RS08325 PF02080 TrkA-C domain NDN12_RS08325 PF02254 TrkA-N domain NDN12_RS08330 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS08330 PF00585 C-terminal regulatory domain of Threonine dehydratase NDN12_RS08335 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NDN12_RS08350 PF00245 Alkaline phosphatase NDN12_RS08360 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN12_RS08360 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN12_RS08370 PF02617 ATP-dependent Clp protease adaptor protein ClpS NDN12_RS08375 PF02861 Clp amino terminal domain, pathogenicity island component NDN12_RS08375 PF17871 AAA lid domain NDN12_RS08375 PF07724 AAA domain (Cdc48 subfamily) NDN12_RS08375 PF10431 C-terminal, D2-small domain, of ClpB protein NDN12_RS08375 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_RS08380 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NDN12_RS08385 PF12848 ABC transporter NDN12_RS08385 PF00005 ABC transporter NDN12_RS08385 PF16326 ABC transporter C-terminal domain NDN12_RS08390 PF00793 DAHP synthetase I family NDN12_RS08395 PF12697 Alpha/beta hydrolase family NDN12_RS08405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_RS08405 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS08430 PF06418 CTP synthase N-terminus NDN12_RS08430 PF00117 Glutamine amidotransferase class-I NDN12_RS08435 PF00793 DAHP synthetase I family NDN12_RS08440 PF00113 Enolase, C-terminal TIM barrel domain NDN12_RS08440 PF03952 Enolase, N-terminal domain NDN12_RS08445 PF04977 Septum formation initiator NDN12_RS08450 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NDN12_RS08470 PF04143 Sulphur transport NDN12_RS08480 PF00753 Metallo-beta-lactamase superfamily NDN12_RS08495 PF00296 Luciferase-like monooxygenase NDN12_RS08510 PF12833 Helix-turn-helix domain NDN12_RS08515 PF01810 LysE type translocator NDN12_RS08545 PF13091 PLD-like domain NDN12_RS08550 PF02583 Metal-sensitive transcriptional repressor NDN12_RS08555 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_RS08555 PF00107 Zinc-binding dehydrogenase NDN12_RS08560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS08560 PF03459 TOBE domain NDN12_RS08565 PF01425 Amidase NDN12_RS08570 PF02785 Biotin carboxylase C-terminal domain NDN12_RS08570 PF00289 Biotin carboxylase, N-terminal domain NDN12_RS08570 PF00364 Biotin-requiring enzyme NDN12_RS08570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_RS08575 PF07729 FCD domain NDN12_RS08575 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS08585 PF12833 Helix-turn-helix domain NDN12_RS08585 PF06719 AraC-type transcriptional regulator N-terminus NDN12_RS08590 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_RS08590 PF00107 Zinc-binding dehydrogenase NDN12_RS08595 PF01965 DJ-1/PfpI family NDN12_RS08600 PF00072 Response regulator receiver domain NDN12_RS08600 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS08605 PF02558 Ketopantoate reductase PanE/ApbA NDN12_RS08605 PF08546 Ketopantoate reductase PanE/ApbA C terminal NDN12_RS08615 PF13533 Biotin-lipoyl like NDN12_RS08620 PF07690 Major Facilitator Superfamily NDN12_RS08655 PF00892 EamA-like transporter family NDN12_RS08660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS08660 PF03466 LysR substrate binding domain NDN12_RS08665 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding NDN12_RS08665 PF18381 YcaO cyclodehydratase C-terminal domain NDN12_RS08675 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS08685 PF00376 MerR family regulatory protein NDN12_RS08685 PF09278 MerR, DNA binding NDN12_RS08690 PF00403 Heavy-metal-associated domain NDN12_RS08695 PF00743 Flavin-binding monooxygenase-like NDN12_RS08705 PF00196 Bacterial regulatory proteins, luxR family NDN12_RS08710 PF01425 Amidase NDN12_RS08715 PF04389 Peptidase family M28 NDN12_RS08715 PF01447 Thermolysin metallopeptidase, catalytic domain NDN12_RS08715 PF02868 Thermolysin metallopeptidase, alpha-helical domain NDN12_RS08725 PF00672 HAMP domain NDN12_RS08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS08725 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS08730 PF00072 Response regulator receiver domain NDN12_RS08730 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS08745 PF05114 Protein of unknown function (DUF692) NDN12_RS08755 PF04542 Sigma-70 region 2 NDN12_RS08755 PF08281 Sigma-70, region 4 NDN12_RS08795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS08795 PF08521 Two-component sensor kinase N-terminal NDN12_RS08795 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS08800 PF00072 Response regulator receiver domain NDN12_RS08800 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS08830 PF03435 Saccharopine dehydrogenase NADP binding domain NDN12_RS08840 PF00561 alpha/beta hydrolase fold NDN12_RS08845 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS08845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_RS08860 PF13411 MerR HTH family regulatory protein NDN12_RS08870 PF02525 Flavodoxin-like fold NDN12_RS08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS08875 PF03466 LysR substrate binding domain NDN12_RS08880 PF08281 Sigma-70, region 4 NDN12_RS08880 PF04542 Sigma-70 region 2 NDN12_RS08890 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS08890 PF00593 TonB dependent receptor NDN12_RS08900 PF04575 Protein of unknown function (DUF560) NDN12_RS08910 PF01126 Heme oxygenase NDN12_RS08930 PF07690 Major Facilitator Superfamily NDN12_RS08940 PF12833 Helix-turn-helix domain NDN12_RS08940 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS08950 PF02322 Cytochrome bd terminal oxidase subunit II NDN12_RS08955 PF01654 Cytochrome bd terminal oxidase subunit I NDN12_RS09000 PF02798 Glutathione S-transferase, N-terminal domain NDN12_RS09005 PF03466 LysR substrate binding domain NDN12_RS09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS09010 PF03788 LrgA family NDN12_RS09015 PF04172 LrgB-like family NDN12_RS09020 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS09020 PF00593 TonB dependent receptor NDN12_RS09025 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS09025 PF00593 TonB dependent receptor NDN12_RS09040 PF01593 Flavin containing amine oxidoreductase NDN12_RS09050 PF07859 alpha/beta hydrolase fold NDN12_RS09055 PF00561 alpha/beta hydrolase fold NDN12_RS09065 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS09070 PF08281 Sigma-70, region 4 NDN12_RS09070 PF04542 Sigma-70 region 2 NDN12_RS09080 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS09080 PF00593 TonB dependent receptor NDN12_RS09100 PF00296 Luciferase-like monooxygenase NDN12_RS09105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_RS09110 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS09115 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS09115 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN12_RS09120 PF00005 ABC transporter NDN12_RS09120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN12_RS09125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS09125 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS09125 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS09135 PF00005 ABC transporter NDN12_RS09135 PF00664 ABC transporter transmembrane region NDN12_RS09140 PF00664 ABC transporter transmembrane region NDN12_RS09140 PF00005 ABC transporter NDN12_RS09150 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS09150 PF00593 TonB dependent receptor NDN12_RS09160 PF00296 Luciferase-like monooxygenase NDN12_RS09165 PF00158 Sigma-54 interaction domain NDN12_RS09170 PF00902 Sec-independent protein translocase protein (TatC) NDN12_RS09175 PF02416 mttA/Hcf106 family NDN12_RS09180 PF02416 mttA/Hcf106 family NDN12_RS09185 PF00005 ABC transporter NDN12_RS09190 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS09195 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS09205 PF00296 Luciferase-like monooxygenase NDN12_RS09210 PF03544 Gram-negative bacterial TonB protein C-terminal NDN12_RS09215 PF01618 MotA/TolQ/ExbB proton channel family NDN12_RS09220 PF02472 Biopolymer transport protein ExbD/TolR NDN12_RS09225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_RS09235 PF00593 TonB dependent receptor NDN12_RS09235 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS09240 PF00296 Luciferase-like monooxygenase NDN12_RS09245 PF03358 NADPH-dependent FMN reductase NDN12_RS09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS09250 PF03466 LysR substrate binding domain NDN12_RS09265 PF09905 DNA-binding protein VF530 NDN12_RS09285 PF02463 RecF/RecN/SMC N terminal domain NDN12_RS09290 PF12705 PD-(D/E)XK nuclease superfamily NDN12_RS09290 PF00580 UvrD/REP helicase N-terminal domain NDN12_RS09290 PF13361 UvrD-like helicase C-terminal domain NDN12_RS09400 PF01066 CDP-alcohol phosphatidyltransferase NDN12_RS09405 PF12146 Serine aminopeptidase, S33 NDN12_RS09405 PF12147 Putative methyltransferase NDN12_RS09410 PF00782 Dual specificity phosphatase, catalytic domain NDN12_RS09430 PF12833 Helix-turn-helix domain NDN12_RS09435 PF02525 Flavodoxin-like fold NDN12_RS09445 PF16220 Domain of unknown function (DUF4880) NDN12_RS09445 PF04773 FecR protein NDN12_RS09450 PF08281 Sigma-70, region 4 NDN12_RS09450 PF04542 Sigma-70 region 2 NDN12_RS09460 PF04185 Phosphoesterase family NDN12_RS09460 PF05506 Domain of unknown function (DUF756) NDN12_RS09470 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS09475 PF01264 Chorismate synthase NDN12_RS09480 PF05175 Methyltransferase small domain NDN12_RS09485 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS09495 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_RS09495 PF17862 AAA+ lid domain NDN12_RS09495 PF01434 Peptidase family M41 NDN12_RS09505 PF05166 YcgL domain NDN12_RS09510 PF01612 3'-5' exonuclease NDN12_RS09510 PF00570 HRDC domain NDN12_RS09515 PF02132 RecR protein NDN12_RS09515 PF13662 Toprim domain NDN12_RS09520 PF02575 YbaB/EbfC DNA-binding family NDN12_RS09525 PF01053 Cys/Met metabolism PLP-dependent enzyme NDN12_RS09535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN12_RS09535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN12_RS09550 PF00857 Isochorismatase family NDN12_RS09565 PF00893 Small Multidrug Resistance protein NDN12_RS09570 PF00959 Phage lysozyme NDN12_RS09585 PF01230 HIT domain NDN12_RS09610 PF02684 Lipid-A-disaccharide synthetase NDN12_RS09640 PF01925 Sulfite exporter TauE/SafE NDN12_RS09645 PF00793 DAHP synthetase I family NDN12_RS09650 PF00719 Inorganic pyrophosphatase NDN12_RS09665 PF00593 TonB dependent receptor NDN12_RS09665 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS09675 PF02654 Cobalamin-5-phosphate synthase NDN12_RS09690 PF02277 Phosphoribosyltransferase NDN12_RS09695 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NDN12_RS09705 PF13419 Haloacid dehalogenase-like hydrolase NDN12_RS09715 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS09715 PF00593 TonB dependent receptor NDN12_RS09720 PF07690 Major Facilitator Superfamily NDN12_RS09735 PF06276 Ferric iron reductase FhuF-like transporter NDN12_RS09735 PF04183 IucA / IucC family NDN12_RS09740 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) NDN12_RS09745 PF06276 Ferric iron reductase FhuF-like transporter NDN12_RS09745 PF04183 IucA / IucC family NDN12_RS09750 PF04073 Aminoacyl-tRNA editing domain NDN12_RS09760 PF03109 ABC1 family NDN12_RS09765 PF01494 FAD binding domain NDN12_RS09770 PF01614 Bacterial transcriptional regulator NDN12_RS09770 PF09339 IclR helix-turn-helix domain NDN12_RS09775 PF00171 Aldehyde dehydrogenase family NDN12_RS09780 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS09785 PF07848 PaaX-like protein NDN12_RS09785 PF08223 PaaX-like protein C-terminal domain NDN12_RS09790 PF14535 AMP-binding enzyme C-terminal domain NDN12_RS09790 PF00501 AMP-binding enzyme NDN12_RS09795 PF00108 Thiolase, N-terminal domain NDN12_RS09795 PF02803 Thiolase, C-terminal domain NDN12_RS09800 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain NDN12_RS09800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_RS09800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_RS09805 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS09810 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS09815 PF00970 Oxidoreductase FAD-binding domain NDN12_RS09815 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS09815 PF00175 Oxidoreductase NAD-binding domain NDN12_RS09820 PF01883 Iron-sulfur cluster assembly protein NDN12_RS09825 PF05138 Phenylacetic acid catabolic protein NDN12_RS09830 PF06243 Phenylacetic acid degradation B NDN12_RS09835 PF05138 Phenylacetic acid catabolic protein NDN12_RS09840 PF00171 Aldehyde dehydrogenase family NDN12_RS09840 PF01575 MaoC like domain NDN12_RS09850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS09850 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS09850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS09855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS09855 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS09855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS09860 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS09860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN12_RS09865 PF00487 Fatty acid desaturase NDN12_RS09870 PF12833 Helix-turn-helix domain NDN12_RS09870 PF12852 Cupin NDN12_RS09875 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS09875 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NDN12_RS09880 PF07977 FabA-like domain NDN12_RS09885 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS09885 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NDN12_RS09895 PF07244 Surface antigen variable number repeat NDN12_RS09895 PF01103 Surface antigen NDN12_RS09900 PF17820 PDZ domain NDN12_RS09900 PF02163 Peptidase family M50 NDN12_RS09900 PF13180 PDZ domain NDN12_RS09905 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NDN12_RS09905 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NDN12_RS09905 PF13288 DXP reductoisomerase C-terminal domain NDN12_RS09915 PF01255 Putative undecaprenyl diphosphate synthase NDN12_RS09920 PF01765 Ribosome recycling factor NDN12_RS09925 PF00696 Amino acid kinase family NDN12_RS09930 PF04055 Radical SAM superfamily NDN12_RS09930 PF00919 Uncharacterized protein family UPF0004 NDN12_RS09930 PF18693 TRAM domain NDN12_RS09935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS09935 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS09935 PF00989 PAS fold NDN12_RS09940 PF02954 Bacterial regulatory protein, Fis family NDN12_RS09940 PF00072 Response regulator receiver domain NDN12_RS09940 PF00158 Sigma-54 interaction domain NDN12_RS09945 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS09950 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NDN12_RS09950 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NDN12_RS09960 PF02542 YgbB family NDN12_RS09970 PF01266 FAD dependent oxidoreductase NDN12_RS09985 PF10415 Fumarase C C-terminus NDN12_RS09985 PF00206 Lyase NDN12_RS09990 PF16363 GDP-mannose 4,6 dehydratase NDN12_RS09995 PF02635 DsrE/DsrF-like family NDN12_RS10010 PF04358 DsrC like protein NDN12_RS10015 PF00892 EamA-like transporter family NDN12_RS10020 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS10020 PF00155 Aminotransferase class I and II NDN12_RS10025 PF01638 HxlR-like helix-turn-helix NDN12_RS10030 PF00994 Probable molybdopterin binding domain NDN12_RS10030 PF03454 MoeA C-terminal region (domain IV) NDN12_RS10030 PF03453 MoeA N-terminal region (domain I and II) NDN12_RS10035 PF00994 Probable molybdopterin binding domain NDN12_RS10035 PF01967 MoaC family NDN12_RS10040 PF02391 MoaE protein NDN12_RS10050 PF04055 Radical SAM superfamily NDN12_RS10050 PF06463 Molybdenum Cofactor Synthesis C NDN12_RS10055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN12_RS10055 PF00384 Molybdopterin oxidoreductase NDN12_RS10055 PF01568 Molydopterin dinucleotide binding domain NDN12_RS10065 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS10070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS10070 PF03466 LysR substrate binding domain NDN12_RS10075 PF06779 Uncharacterised MFS-type transporter YbfB NDN12_RS10080 PF12804 MobA-like NTP transferase domain NDN12_RS10085 PF04324 BFD-like [2Fe-2S] binding domain NDN12_RS10085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NDN12_RS10085 PF00384 Molybdopterin oxidoreductase NDN12_RS10085 PF01568 Molydopterin dinucleotide binding domain NDN12_RS10090 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN12_RS10090 PF04324 BFD-like [2Fe-2S] binding domain NDN12_RS10090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN12_RS10090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN12_RS10090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS10095 PF18267 Rubredoxin NAD+ reductase C-terminal domain NDN12_RS10095 PF13806 Rieske-like [2Fe-2S] domain NDN12_RS10095 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN12_RS10095 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN12_RS10095 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS10095 PF04324 BFD-like [2Fe-2S] binding domain NDN12_RS10100 PF07690 Major Facilitator Superfamily NDN12_RS10110 PF00005 ABC transporter NDN12_RS10115 PF01220 Dehydroquinase class II NDN12_RS10120 PF00364 Biotin-requiring enzyme NDN12_RS10125 PF02785 Biotin carboxylase C-terminal domain NDN12_RS10125 PF00289 Biotin carboxylase, N-terminal domain NDN12_RS10125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_RS10135 PF01425 Amidase NDN12_RS10140 PF12832 MFS_1 like family NDN12_RS10145 PF00324 Amino acid permease NDN12_RS10155 PF14497 Glutathione S-transferase, C-terminal domain NDN12_RS10155 PF02798 Glutathione S-transferase, N-terminal domain NDN12_RS10170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_RS10180 PF01645 Conserved region in glutamate synthase NDN12_RS10210 PF01565 FAD binding domain NDN12_RS10210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NDN12_RS10215 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN12_RS10255 PF00465 Iron-containing alcohol dehydrogenase NDN12_RS10260 PF03061 Thioesterase superfamily NDN12_RS10265 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NDN12_RS10265 PF12170 DNA polymerase III tau subunit V interacting with alpha NDN12_RS10265 PF12169 DNA polymerase III subunits gamma and tau domain III NDN12_RS10270 PF08007 Cupin superfamily protein NDN12_RS10295 PF01740 STAS domain NDN12_RS10295 PF00916 Sulfate permease family NDN12_RS10300 PF00375 Sodium:dicarboxylate symporter family NDN12_RS10310 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NDN12_RS10315 PF00924 Mechanosensitive ion channel NDN12_RS10365 PF03616 Sodium/glutamate symporter NDN12_RS10385 PF00005 ABC transporter NDN12_RS10385 PF00664 ABC transporter transmembrane region NDN12_RS10390 PF01575 MaoC like domain NDN12_RS10395 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NDN12_RS10395 PF12833 Helix-turn-helix domain NDN12_RS10400 PF01597 Glycine cleavage H-protein NDN12_RS10405 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NDN12_RS10405 PF18416 N-acetylglucosamine binding protein domain 2 NDN12_RS10410 PF10415 Fumarase C C-terminus NDN12_RS10410 PF00206 Lyase NDN12_RS10415 PF00474 Sodium:solute symporter family NDN12_RS10420 PF01037 Lrp/AsnC ligand binding domain NDN12_RS10425 PF00171 Aldehyde dehydrogenase family NDN12_RS10425 PF01619 Proline dehydrogenase NDN12_RS10425 PF14850 DNA-binding domain of Proline dehydrogenase NDN12_RS10425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NDN12_RS10430 PF04229 GrpB protein NDN12_RS10435 PF05958 tRNA (Uracil-5-)-methyltransferase NDN12_RS10445 PF09992 Phosphodiester glycosidase NDN12_RS10455 PF09857 Putative toxin of bacterial toxin-antitoxin pair NDN12_RS10490 PF00717 Peptidase S24-like NDN12_RS10490 PF01726 LexA DNA binding domain NDN12_RS10495 PF04264 YceI-like domain NDN12_RS10515 PF02779 Transketolase, pyrimidine binding domain NDN12_RS10515 PF02780 Transketolase, C-terminal domain NDN12_RS10515 PF00456 Transketolase, thiamine diphosphate binding domain NDN12_RS10520 PF02773 S-adenosylmethionine synthetase, C-terminal domain NDN12_RS10520 PF02772 S-adenosylmethionine synthetase, central domain NDN12_RS10520 PF00438 S-adenosylmethionine synthetase, N-terminal domain NDN12_RS10540 PF03891 Domain of unknown function (DUF333) NDN12_RS10550 PF01266 FAD dependent oxidoreductase NDN12_RS10555 PF00313 'Cold-shock' DNA-binding domain NDN12_RS10560 PF00313 'Cold-shock' DNA-binding domain NDN12_RS10575 PF02075 Crossover junction endodeoxyribonuclease RuvC NDN12_RS10580 PF03853 YjeF-related protein N-terminus NDN12_RS10580 PF01256 Carbohydrate kinase NDN12_RS10585 PF08331 Domain of unknown function (DUF1730) NDN12_RS10590 PF06968 Biotin and Thiamin Synthesis associated domain NDN12_RS10590 PF04055 Radical SAM superfamily NDN12_RS10605 PF16970 Type-1 fimbrial protein, A NDN12_RS10610 PF02753 Pili assembly chaperone PapD, C-terminal domain NDN12_RS10610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain NDN12_RS10615 PF00577 Outer membrane usher protein NDN12_RS10615 PF13954 PapC N-terminal domain NDN12_RS10615 PF13953 PapC C-terminal domain NDN12_RS10620 PF09160 FimH, mannose binding NDN12_RS10635 PF18417 L-lysine epsilon oxidase C-terminal domain NDN12_RS10635 PF17990 L-Lysine epsilon oxidase N-terminal NDN12_RS10645 PF00199 Catalase NDN12_RS10730 PF00857 Isochorismatase family NDN12_RS10755 PF01709 Transcriptional regulator NDN12_RS10770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS10770 PF08028 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS10780 PF00296 Luciferase-like monooxygenase NDN12_RS10785 PF03180 NLPA lipoprotein NDN12_RS10790 PF09383 NIL domain NDN12_RS10790 PF00005 ABC transporter NDN12_RS10795 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS10800 PF01926 50S ribosome-binding GTPase NDN12_RS10800 PF06071 Protein of unknown function (DUF933) NDN12_RS10805 PF02311 AraC-like ligand binding domain NDN12_RS10805 PF12833 Helix-turn-helix domain NDN12_RS10820 PF00027 Cyclic nucleotide-binding domain NDN12_RS10820 PF13545 Crp-like helix-turn-helix domain NDN12_RS10835 PF01361 Tautomerase enzyme NDN12_RS10840 PF02222 ATP-grasp domain NDN12_RS10845 PF08335 GlnD PII-uridylyltransferase NDN12_RS10845 PF01966 HD domain NDN12_RS10845 PF01909 Nucleotidyltransferase domain NDN12_RS10850 PF00155 Aminotransferase class I and II NDN12_RS10855 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS10855 PF00593 TonB dependent receptor NDN12_RS10865 PF01037 Lrp/AsnC ligand binding domain NDN12_RS10870 PF13533 Biotin-lipoyl like NDN12_RS10875 PF00873 AcrB/AcrD/AcrF family NDN12_RS10880 PF01810 LysE type translocator NDN12_RS10890 PF00255 Glutathione peroxidase NDN12_RS10895 PF01641 SelR domain NDN12_RS10900 PF00155 Aminotransferase class I and II NDN12_RS10910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NDN12_RS10910 PF14579 Helix-hairpin-helix motif NDN12_RS10910 PF02811 PHP domain NDN12_RS10910 PF01336 OB-fold nucleic acid binding domain NDN12_RS10910 PF07733 Bacterial DNA polymerase III alpha NTPase domain NDN12_RS10915 PF00588 SpoU rRNA Methylase family NDN12_RS10920 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS10935 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS10935 PF13192 Thioredoxin domain NDN12_RS10945 PF05816 Toxic anion resistance protein (TelA) NDN12_RS10975 PF02673 Bacitracin resistance protein BacA NDN12_RS10985 PF00156 Phosphoribosyl transferase domain NDN12_RS10990 PF02674 Colicin V production protein NDN12_RS10995 PF01180 Dihydroorotate dehydrogenase NDN12_RS11015 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NDN12_RS11015 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NDN12_RS11020 PF00881 Nitroreductase family NDN12_RS11035 PF00162 Phosphoglycerate kinase NDN12_RS11045 PF02545 Maf-like protein NDN12_RS11055 PF07690 Major Facilitator Superfamily NDN12_RS11070 PF00144 Beta-lactamase NDN12_RS11085 PF02803 Thiolase, C-terminal domain NDN12_RS11085 PF00108 Thiolase, N-terminal domain NDN12_RS11100 PF03737 Aldolase/RraA NDN12_RS11105 PF13460 NAD(P)H-binding NDN12_RS11110 PF01649 Ribosomal protein S20 NDN12_RS11120 PF00041 Fibronectin type III domain NDN12_RS11120 PF12561 ToxR activated gene A lipoprotein domain NDN12_RS11130 PF00459 Inositol monophosphatase family NDN12_RS11135 PF13419 Haloacid dehalogenase-like hydrolase NDN12_RS11140 PF01479 S4 domain NDN12_RS11145 PF00154 recA bacterial DNA recombination protein NDN12_RS11150 PF02631 RecX family NDN12_RS11170 PF00216 Bacterial DNA-binding protein NDN12_RS11185 PF02082 Transcriptional regulator NDN12_RS11190 PF00266 Aminotransferase class-V NDN12_RS11195 PF01592 NifU-like N terminal domain NDN12_RS11200 PF01521 Iron-sulphur cluster biosynthesis NDN12_RS11205 PF00226 DnaJ domain NDN12_RS11205 PF07743 HSCB C-terminal oligomerisation domain NDN12_RS11210 PF00012 Hsp70 protein NDN12_RS11215 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS11225 PF00211 Adenylate and Guanylate cyclase catalytic domain NDN12_RS11235 PF02559 CarD-like/TRCF domain NDN12_RS11235 PF00270 DEAD/DEAH box helicase NDN12_RS11235 PF00271 Helicase conserved C-terminal domain NDN12_RS11235 PF03461 TRCF domain NDN12_RS11235 PF17757 UvrB interaction domain NDN12_RS11250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS11250 PF03466 LysR substrate binding domain NDN12_RS11255 PF00923 Transaldolase/Fructose-6-phosphate aldolase NDN12_RS11260 PF01810 LysE type translocator NDN12_RS11265 PF03594 Benzoate membrane transport protein NDN12_RS11270 PF00999 Sodium/hydrogen exchanger family NDN12_RS11270 PF02254 TrkA-N domain NDN12_RS11275 PF02308 MgtC family NDN12_RS11295 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NDN12_RS11295 PF11940 Domain of unknown function (DUF3458) Ig-like fold NDN12_RS11295 PF01433 Peptidase family M1 domain NDN12_RS11325 PF02110 Hydroxyethylthiazole kinase family NDN12_RS11330 PF07690 Major Facilitator Superfamily NDN12_RS11335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN12_RS11345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS11345 PF03466 LysR substrate binding domain NDN12_RS11355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN12_RS11355 PF00205 Thiamine pyrophosphate enzyme, central domain NDN12_RS11355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN12_RS11360 PF00171 Aldehyde dehydrogenase family NDN12_RS11365 PF01958 Domain of unknown function DUF108 NDN12_RS11365 PF03447 Homoserine dehydrogenase, NAD binding domain NDN12_RS11375 PF12697 Alpha/beta hydrolase family NDN12_RS11385 PF07690 Major Facilitator Superfamily NDN12_RS11390 PF14759 Reductase C-terminal NDN12_RS11390 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS11395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_RS11405 PF00355 Rieske [2Fe-2S] domain NDN12_RS11415 PF00355 Rieske [2Fe-2S] domain NDN12_RS11420 PF09339 IclR helix-turn-helix domain NDN12_RS11420 PF01614 Bacterial transcriptional regulator NDN12_RS11425 PF00106 short chain dehydrogenase NDN12_RS11440 PF01037 Lrp/AsnC ligand binding domain NDN12_RS11445 PF00892 EamA-like transporter family NDN12_RS11450 PF07690 Major Facilitator Superfamily NDN12_RS11465 PF06968 Biotin and Thiamin Synthesis associated domain NDN12_RS11465 PF04055 Radical SAM superfamily NDN12_RS11470 PF13193 AMP-binding enzyme C-terminal domain NDN12_RS11470 PF00501 AMP-binding enzyme NDN12_RS11475 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS11480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS11480 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS11480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS11485 PF01039 Carboxyl transferase domain NDN12_RS11490 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS11495 PF00289 Biotin carboxylase, N-terminal domain NDN12_RS11495 PF02785 Biotin carboxylase C-terminal domain NDN12_RS11495 PF00364 Biotin-requiring enzyme NDN12_RS11495 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_RS11495 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN12_RS11500 PF00682 HMGL-like NDN12_RS11505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS11505 PF03466 LysR substrate binding domain NDN12_RS11515 PF06224 Winged helix DNA-binding domain NDN12_RS11520 PF12833 Helix-turn-helix domain NDN12_RS11520 PF02311 AraC-like ligand binding domain NDN12_RS11525 PF07690 Major Facilitator Superfamily NDN12_RS11530 PF07690 Major Facilitator Superfamily NDN12_RS11550 PF07690 Major Facilitator Superfamily NDN12_RS11555 PF01638 HxlR-like helix-turn-helix NDN12_RS11570 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_RS11575 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_RS11580 PF00005 ABC transporter NDN12_RS11585 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS11590 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS11615 PF00324 Amino acid permease NDN12_RS11620 PF13742 OB-fold nucleic acid binding domain NDN12_RS11620 PF02601 Exonuclease VII, large subunit NDN12_RS11630 PF01323 DSBA-like thioredoxin domain NDN12_RS11635 PF00884 Sulfatase NDN12_RS11635 PF08019 Phosphoethanolamine transferase EptA/EptB NDN12_RS11640 PF02705 K+ potassium transporter NDN12_RS11655 PF01872 RibD C-terminal domain NDN12_RS11660 PF00813 FliP family NDN12_RS11670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NDN12_RS11680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN12_RS11680 PF00460 Flagella basal body rod protein NDN12_RS11680 PF07559 Flagellar basal body protein FlaE NDN12_RS11685 PF03963 Flagellar hook capping protein - N-terminal region NDN12_RS11700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_RS11700 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN12_RS11700 PF18269 T3SS EscN ATPase C-terminal domain NDN12_RS11715 PF01514 Secretory protein of YscJ/FliF family NDN12_RS11715 PF08345 Flagellar M-ring protein C-terminal NDN12_RS11720 PF02049 Flagellar hook-basal body complex protein FliE NDN12_RS11725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN12_RS11725 PF00460 Flagella basal body rod protein NDN12_RS11730 PF00460 Flagella basal body rod protein NDN12_RS11735 PF02119 Flagellar P-ring protein NDN12_RS11740 PF02107 Flagellar L-ring protein NDN12_RS11750 PF00460 Flagella basal body rod protein NDN12_RS11750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NDN12_RS11760 PF00771 FHIPEP family NDN12_RS11765 PF01312 FlhB HrpN YscU SpaS Family NDN12_RS11770 PF01311 Bacterial export proteins, family 1 NDN12_RS11775 PF01313 Bacterial export proteins, family 3 NDN12_RS11795 PF01476 LysM domain NDN12_RS11795 PF00756 Putative esterase NDN12_RS11805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_RS11805 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS11810 PF00892 EamA-like transporter family NDN12_RS11815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS11815 PF03466 LysR substrate binding domain NDN12_RS11825 PF00764 Arginosuccinate synthase NDN12_RS11830 PF17954 Quercetinase C-terminal cupin domain NDN12_RS11830 PF02678 Pirin NDN12_RS11860 PF13559 Domain of unknown function (DUF4129) NDN12_RS11860 PF01841 Transglutaminase-like superfamily NDN12_RS11860 PF11992 Domain of unknown function (DUF3488) NDN12_RS11870 PF07726 ATPase family associated with various cellular activities (AAA) NDN12_RS11870 PF17863 AAA lid domain NDN12_RS11875 PF04328 Selenoprotein, putative NDN12_RS11880 PF02554 Carbon starvation protein CstA NDN12_RS11880 PF13722 5TM C-terminal transporter carbon starvation CstA NDN12_RS11885 PF09285 Elongation factor P, C-terminal NDN12_RS11885 PF01132 Elongation factor P (EF-P) OB domain NDN12_RS11885 PF08207 Elongation factor P (EF-P) KOW-like domain NDN12_RS11890 PF04055 Radical SAM superfamily NDN12_RS11905 PF01197 Ribosomal protein L31 NDN12_RS11910 PF13593 SBF-like CPA transporter family (DUF4137) NDN12_RS11915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_RS11920 PF07690 Major Facilitator Superfamily NDN12_RS11925 PF13654 AAA domain NDN12_RS11925 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN12_RS11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS11930 PF03466 LysR substrate binding domain NDN12_RS11935 PF01551 Peptidase family M23 NDN12_RS11935 PF01476 LysM domain NDN12_RS11940 PF01975 Survival protein SurE NDN12_RS11960 PF00768 D-alanyl-D-alanine carboxypeptidase NDN12_RS11960 PF07943 Penicillin-binding protein 5, C-terminal domain NDN12_RS11965 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS11975 PF00293 NUDIX domain NDN12_RS11985 PF04356 Protein of unknown function (DUF489) NDN12_RS11990 PF08328 Adenylosuccinate lyase C-terminal NDN12_RS11990 PF00206 Lyase NDN12_RS12010 PF05257 CHAP domain NDN12_RS12010 PF01476 LysM domain NDN12_RS12020 PF00324 Amino acid permease NDN12_RS12025 PF04958 Arginine N-succinyltransferase beta subunit NDN12_RS12050 PF00069 Protein kinase domain NDN12_RS12050 PF03793 PASTA domain NDN12_RS12085 PF00892 EamA-like transporter family NDN12_RS12110 PF00814 Glycoprotease family NDN12_RS12115 PF01165 Ribosomal protein S21 NDN12_RS12120 PF09424 Yqey-like protein NDN12_RS12135 PF13302 Acetyltransferase (GNAT) domain NDN12_RS12140 PF01435 Peptidase family M48 NDN12_RS12145 PF01553 Acyltransferase NDN12_RS12150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN12_RS12150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN12_RS12160 PF12706 Beta-lactamase superfamily domain NDN12_RS12170 PF02525 Flavodoxin-like fold NDN12_RS12175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS12175 PF03466 LysR substrate binding domain NDN12_RS12180 PF00106 short chain dehydrogenase NDN12_RS12185 PF00106 short chain dehydrogenase NDN12_RS12190 PF12146 Serine aminopeptidase, S33 NDN12_RS12195 PF12146 Serine aminopeptidase, S33 NDN12_RS12200 PF12833 Helix-turn-helix domain NDN12_RS12200 PF06719 AraC-type transcriptional regulator N-terminus NDN12_RS12205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_RS12210 PF12833 Helix-turn-helix domain NDN12_RS12210 PF06719 AraC-type transcriptional regulator N-terminus NDN12_RS12215 PF11799 impB/mucB/samB family C-terminal domain NDN12_RS12215 PF13438 Domain of unknown function (DUF4113) NDN12_RS12215 PF00817 impB/mucB/samB family NDN12_RS12220 PF00717 Peptidase S24-like NDN12_RS12250 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS12250 PF00593 TonB dependent receptor NDN12_RS12260 PF00364 Biotin-requiring enzyme NDN12_RS12260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_RS12260 PF02785 Biotin carboxylase C-terminal domain NDN12_RS12260 PF00289 Biotin carboxylase, N-terminal domain NDN12_RS12270 PF07286 Protein of unknown function (DUF1445) NDN12_RS12275 PF03746 LamB/YcsF family NDN12_RS12280 PF01566 Natural resistance-associated macrophage protein NDN12_RS12285 PF03466 LysR substrate binding domain NDN12_RS12285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS12295 PF03471 Transporter associated domain NDN12_RS12295 PF03741 Integral membrane protein TerC family NDN12_RS12300 PF01624 MutS domain I NDN12_RS12300 PF05188 MutS domain II NDN12_RS12300 PF05192 MutS domain III NDN12_RS12300 PF05190 MutS family domain IV NDN12_RS12300 PF00488 MutS domain V NDN12_RS12310 PF11953 Domain of unknown function (DUF3470) NDN12_RS12310 PF00037 4Fe-4S binding domain NDN12_RS12320 PF01596 O-methyltransferase NDN12_RS12330 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS12335 PF01205 Uncharacterized protein family UPF0029 NDN12_RS12345 PF03412 Peptidase C39 family NDN12_RS12345 PF00005 ABC transporter NDN12_RS12345 PF00664 ABC transporter transmembrane region NDN12_RS12350 PF02321 Outer membrane efflux protein NDN12_RS12355 PF00005 ABC transporter NDN12_RS12355 PF12399 Branched-chain amino acid ATP-binding cassette transporter NDN12_RS12360 PF03968 OstA-like protein NDN12_RS12375 PF00571 CBS domain NDN12_RS12375 PF01380 SIS domain NDN12_RS12385 PF01406 tRNA synthetases class I (C) catalytic domain NDN12_RS12385 PF09190 DALR domain NDN12_RS12395 PF00444 Ribosomal protein L36 NDN12_RS12400 PF04170 NlpE N-terminal domain NDN12_RS12400 PF17185 NlpE C-terminal OB domain NDN12_RS12405 PF00889 Elongation factor TS NDN12_RS12410 PF00318 Ribosomal protein S2 NDN12_RS12415 PF00557 Metallopeptidase family M24 NDN12_RS12425 PF07690 Major Facilitator Superfamily NDN12_RS12445 PF13180 PDZ domain NDN12_RS12445 PF17820 PDZ domain NDN12_RS12450 PF01784 NIF3 (NGG1p interacting factor 3) NDN12_RS12455 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN12_RS12455 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN12_RS12460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NDN12_RS12460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NDN12_RS12465 PF00463 Isocitrate lyase family NDN12_RS12470 PF03466 LysR substrate binding domain NDN12_RS12470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS12475 PF03471 Transporter associated domain NDN12_RS12475 PF00571 CBS domain NDN12_RS12475 PF01595 Cyclin M transmembrane N-terminal domain NDN12_RS12480 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN12_RS12480 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN12_RS12500 PF00009 Elongation factor Tu GTP binding domain NDN12_RS12505 PF01507 Phosphoadenosine phosphosulfate reductase family NDN12_RS12510 PF14052 Capsule assembly protein Wzi NDN12_RS12520 PF00152 tRNA synthetases class II (D, K and N) NDN12_RS12520 PF01336 OB-fold nucleic acid binding domain NDN12_RS12530 PF00301 Rubredoxin NDN12_RS12535 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS12535 PF18113 Rubredoxin binding C-terminal domain NDN12_RS12540 PF00561 alpha/beta hydrolase fold NDN12_RS12545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS12545 PF03466 LysR substrate binding domain NDN12_RS12550 PF01207 Dihydrouridine synthase (Dus) NDN12_RS12555 PF07759 Protein of unknown function (DUF1615) NDN12_RS12565 PF00696 Amino acid kinase family NDN12_RS12565 PF01472 PUA domain NDN12_RS12570 PF01018 GTP1/OBG NDN12_RS12570 PF01926 50S ribosome-binding GTPase NDN12_RS12590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NDN12_RS12590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NDN12_RS12605 PF02151 UvrB/uvrC motif NDN12_RS12605 PF04851 Type III restriction enzyme, res subunit NDN12_RS12605 PF12344 Ultra-violet resistance protein B NDN12_RS12605 PF17757 UvrB interaction domain NDN12_RS12605 PF00271 Helicase conserved C-terminal domain NDN12_RS12620 PF00155 Aminotransferase class I and II NDN12_RS12665 PF01040 UbiA prenyltransferase family NDN12_RS12670 PF04345 Chorismate lyase NDN12_RS12675 PF03951 Glutamine synthetase, beta-Grasp domain NDN12_RS12675 PF00120 Glutamine synthetase, catalytic domain NDN12_RS12680 PF00117 Glutamine amidotransferase class-I NDN12_RS12685 PF00375 Sodium:dicarboxylate symporter family NDN12_RS12695 PF00593 TonB dependent receptor NDN12_RS12695 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS12700 PF00591 Glycosyl transferase family, a/b domain NDN12_RS12700 PF02885 Glycosyl transferase family, helical bundle domain NDN12_RS12705 PF00218 Indole-3-glycerol phosphate synthase NDN12_RS12720 PF01227 GTP cyclohydrolase I NDN12_RS12740 PF05675 Protein of unknown function (DUF817) NDN12_RS12745 PF01208 Uroporphyrinogen decarboxylase (URO-D) NDN12_RS12755 PF00990 Diguanylate cyclase, GGDEF domain NDN12_RS12755 PF00563 EAL domain NDN12_RS12755 PF00360 Phytochrome region NDN12_RS12755 PF01590 GAF domain NDN12_RS12760 PF01979 Amidohydrolase family NDN12_RS12765 PF00929 Exonuclease NDN12_RS12775 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS12775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NDN12_RS12780 PF00005 ABC transporter NDN12_RS12780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NDN12_RS12785 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS12785 PF12911 N-terminal TM domain of oligopeptide transport permease C NDN12_RS12790 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS12795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NDN12_RS12800 PF01476 LysM domain NDN12_RS12800 PF01464 Transglycosylase SLT domain NDN12_RS12805 PF00929 Exonuclease NDN12_RS12815 PF00293 NUDIX domain NDN12_RS12815 PF09297 NADH pyrophosphatase zinc ribbon domain NDN12_RS12835 PF04972 BON domain NDN12_RS12840 PF02021 Uncharacterised protein family UPF0102 NDN12_RS12850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN12_RS12860 PF13411 MerR HTH family regulatory protein NDN12_RS12870 PF01494 FAD binding domain NDN12_RS12875 PF01494 FAD binding domain NDN12_RS12885 PF05195 Aminopeptidase P, N-terminal domain NDN12_RS12885 PF00557 Metallopeptidase family M24 NDN12_RS12890 PF03695 Uncharacterised protein family (UPF0149) NDN12_RS12925 PF04355 SmpA / OmlA family NDN12_RS12925 PF00691 OmpA family NDN12_RS12930 PF13018 Extended Signal Peptide of Type V secretion system NDN12_RS12930 PF03895 YadA-like membrane anchor domain NDN12_RS12930 PF05658 Head domain of trimeric autotransporter adhesin NDN12_RS12930 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_RS12940 PF00691 OmpA family NDN12_RS12940 PF04355 SmpA / OmlA family NDN12_RS12945 PF05662 Coiled stalk of trimeric autotransporter adhesin NDN12_RS12945 PF13018 Extended Signal Peptide of Type V secretion system NDN12_RS12945 PF05658 Head domain of trimeric autotransporter adhesin NDN12_RS12945 PF03895 YadA-like membrane anchor domain NDN12_RS12950 PF01812 5-formyltetrahydrofolate cyclo-ligase family NDN12_RS12955 PF02190 ATP-dependent protease La (LON) substrate-binding domain NDN12_RS12955 PF05362 Lon protease (S16) C-terminal proteolytic domain NDN12_RS12955 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_RS12960 PF02590 Predicted SPOUT methyltransferase NDN12_RS12965 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase NDN12_RS12975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NDN12_RS12975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NDN12_RS12980 PF04060 Putative Fe-S cluster NDN12_RS12985 PF10576 Iron-sulfur binding domain of endonuclease III NDN12_RS12985 PF00633 Helix-hairpin-helix motif NDN12_RS12985 PF00730 HhH-GPD superfamily base excision DNA repair protein NDN12_RS12995 PF05191 Adenylate kinase, active site lid NDN12_RS13010 PF03717 Penicillin-binding Protein dimerisation domain NDN12_RS13010 PF00905 Penicillin binding protein transpeptidase domain NDN12_RS13035 PF17961 Bacterial Ig domain NDN12_RS13035 PF00746 LPXTG cell wall anchor motif NDN12_RS13035 PF17210 SdrD B-like domain NDN12_RS13035 PF10425 C-terminus of bacterial fibrinogen-binding adhesin NDN12_RS13035 PF04650 YSIRK type signal peptide NDN12_RS13040 PF01343 Peptidase family S49 NDN12_RS13040 PF08496 Peptidase family S49 N-terminal NDN12_RS13045 PF00005 ABC transporter NDN12_RS13050 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS13055 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS13060 PF12849 PBP superfamily domain NDN12_RS13075 PF00324 Amino acid permease NDN12_RS13080 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NDN12_RS13080 PF00205 Thiamine pyrophosphate enzyme, central domain NDN12_RS13080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NDN12_RS13085 PF01037 Lrp/AsnC ligand binding domain NDN12_RS13090 PF00171 Aldehyde dehydrogenase family NDN12_RS13095 PF00355 Rieske [2Fe-2S] domain NDN12_RS13100 PF00282 Pyridoxal-dependent decarboxylase conserved domain NDN12_RS13105 PF00202 Aminotransferase class-III NDN12_RS13115 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS13115 PF07660 Secretin and TonB N terminus short domain NDN12_RS13115 PF00593 TonB dependent receptor NDN12_RS13120 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS13120 PF07660 Secretin and TonB N terminus short domain NDN12_RS13120 PF00593 TonB dependent receptor NDN12_RS13140 PF00487 Fatty acid desaturase NDN12_RS13145 PF00175 Oxidoreductase NAD-binding domain NDN12_RS13145 PF00111 2Fe-2S iron-sulfur cluster binding domain NDN12_RS13145 PF00970 Oxidoreductase FAD-binding domain NDN12_RS13150 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS13160 PF00210 Ferritin-like domain NDN12_RS13165 PF18337 RapA N-terminal Tudor like domain NDN12_RS13165 PF12137 RNA polymerase recycling family C-terminal NDN12_RS13165 PF00176 SNF2 family N-terminal domain NDN12_RS13165 PF00271 Helicase conserved C-terminal domain NDN12_RS13165 PF18339 RapA N-terminal Tudor like domain 1 NDN12_RS13170 PF00849 RNA pseudouridylate synthase NDN12_RS13180 PF00202 Aminotransferase class-III NDN12_RS13185 PF02581 Thiamine monophosphate synthase NDN12_RS13195 PF01928 CYTH domain NDN12_RS13210 PF00675 Insulinase (Peptidase family M16) NDN12_RS13210 PF05193 Peptidase M16 inactive domain NDN12_RS13215 PF02567 Phenazine biosynthesis-like protein NDN12_RS13235 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN12_RS13240 PF00849 RNA pseudouridylate synthase NDN12_RS13250 PF03971 Monomeric isocitrate dehydrogenase NDN12_RS13255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS13255 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS13255 PF00672 HAMP domain NDN12_RS13260 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS13260 PF00072 Response regulator receiver domain NDN12_RS13270 PF00576 HIUase/Transthyretin family NDN12_RS13280 PF00768 D-alanyl-D-alanine carboxypeptidase NDN12_RS13280 PF07943 Penicillin-binding protein 5, C-terminal domain NDN12_RS13285 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS13290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_RS13295 PF03441 FAD binding domain of DNA photolyase NDN12_RS13295 PF00875 DNA photolyase NDN12_RS13325 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN12_RS13340 PF03060 Nitronate monooxygenase NDN12_RS13345 PF13090 Polyphosphate kinase C-terminal domain 2 NDN12_RS13345 PF17941 Polyphosphate kinase C-terminal domain 1 NDN12_RS13345 PF13089 Polyphosphate kinase N-terminal domain NDN12_RS13345 PF02503 Polyphosphate kinase middle domain NDN12_RS13350 PF00912 Transglycosylase NDN12_RS13355 PF01694 Rhomboid family NDN12_RS13365 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS13365 PF00593 TonB dependent receptor NDN12_RS13370 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS13370 PF00072 Response regulator receiver domain NDN12_RS13375 PF11808 Phosphate regulon sensor protein PhoR NDN12_RS13375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS13375 PF00989 PAS fold NDN12_RS13375 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS13385 PF00005 ABC transporter NDN12_RS13390 PF13472 GDSL-like Lipase/Acylhydrolase family NDN12_RS13395 PF00583 Acetyltransferase (GNAT) family NDN12_RS13400 PF00484 Carbonic anhydrase NDN12_RS13405 PF00561 alpha/beta hydrolase fold NDN12_RS13415 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS13415 PF00593 TonB dependent receptor NDN12_RS13420 PF01521 Iron-sulphur cluster biosynthesis NDN12_RS13420 PF01106 NifU-like domain NDN12_RS13430 PF00884 Sulfatase NDN12_RS13435 PF03781 Sulfatase-modifying factor enzyme 1 NDN12_RS13445 PF00152 tRNA synthetases class II (D, K and N) NDN12_RS13450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NDN12_RS13450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NDN12_RS13450 PF11890 Domain of unknown function (DUF3410) NDN12_RS13455 PF01219 Prokaryotic diacylglycerol kinase NDN12_RS13465 PF00118 TCP-1/cpn60 chaperonin family NDN12_RS13470 PF00166 Chaperonin 10 Kd subunit NDN12_RS13480 PF00781 Diacylglycerol kinase catalytic domain NDN12_RS13485 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain NDN12_RS13485 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain NDN12_RS13490 PF07660 Secretin and TonB N terminus short domain NDN12_RS13490 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS13490 PF00593 TonB dependent receptor NDN12_RS13495 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NDN12_RS13495 PF01266 FAD dependent oxidoreductase NDN12_RS13500 PF00455 DeoR C terminal sensor domain NDN12_RS13500 PF08220 DeoR-like helix-turn-helix domain NDN12_RS13505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NDN12_RS13505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NDN12_RS13515 PF14542 GCN5-related N-acetyl-transferase NDN12_RS13525 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NDN12_RS13525 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NDN12_RS13540 PF16655 PhoD-like phosphatase, N-terminal domain NDN12_RS13540 PF09423 PhoD-like phosphatase NDN12_RS13555 PF00535 Glycosyl transferase family 2 NDN12_RS13560 PF14883 Hypothetical glycosyl hydrolase family 13 NDN12_RS13560 PF01522 Polysaccharide deacetylase NDN12_RS13570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_RS13575 PF07152 YaeQ protein NDN12_RS13580 PF02492 CobW/HypB/UreG, nucleotide-binding domain NDN12_RS13580 PF07683 Cobalamin synthesis protein cobW C-terminal domain NDN12_RS13590 PF03061 Thioesterase superfamily NDN12_RS13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS13610 PF03466 LysR substrate binding domain NDN12_RS13620 PF01810 LysE type translocator NDN12_RS13650 PF03449 Transcription elongation factor, N-terminal NDN12_RS13650 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN12_RS13685 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_RS13685 PF01464 Transglycosylase SLT domain NDN12_RS13695 PF01171 PP-loop family NDN12_RS13700 PF01464 Transglycosylase SLT domain NDN12_RS13705 PF01435 Peptidase family M48 NDN12_RS13715 PF00571 CBS domain NDN12_RS13715 PF01769 Divalent cation transporter NDN12_RS13715 PF03448 MgtE intracellular N domain NDN12_RS13720 PF00873 AcrB/AcrD/AcrF family NDN12_RS13725 PF00884 Sulfatase NDN12_RS13730 PF03009 Glycerophosphoryl diester phosphodiesterase family NDN12_RS13745 PF00561 alpha/beta hydrolase fold NDN12_RS13755 PF13291 ACT domain NDN12_RS13755 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS13760 PF00092 von Willebrand factor type A domain NDN12_RS13760 PF12450 von Willebrand factor NDN12_RS13760 PF12034 Domain of unknown function (DUF3520) NDN12_RS13770 PF00809 Pterin binding enzyme NDN12_RS13775 PF00004 ATPase family associated with various cellular activities (AAA) NDN12_RS13775 PF17862 AAA+ lid domain NDN12_RS13775 PF01434 Peptidase family M41 NDN12_RS13775 PF06480 FtsH Extracellular NDN12_RS13780 PF01728 FtsJ-like methyltransferase NDN12_RS13785 PF01985 CRS1 / YhbY (CRM) domain NDN12_RS13800 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NDN12_RS13800 PF00117 Glutamine amidotransferase class-I NDN12_RS13805 PF02142 MGS-like domain NDN12_RS13805 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_RS13805 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NDN12_RS13810 PF01272 Transcription elongation factor, GreA/GreB, C-term NDN12_RS13810 PF03449 Transcription elongation factor, N-terminal NDN12_RS13820 PF07660 Secretin and TonB N terminus short domain NDN12_RS13820 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS13820 PF00593 TonB dependent receptor NDN12_RS13825 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS13830 PF00582 Universal stress protein family NDN12_RS13835 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NDN12_RS13845 PF09587 Bacterial capsule synthesis protein PGA_cap NDN12_RS13860 PF00999 Sodium/hydrogen exchanger family NDN12_RS13865 PF04228 Putative neutral zinc metallopeptidase NDN12_RS13870 PF05661 Protein of unknown function (DUF808) NDN12_RS13875 PF00579 tRNA synthetases class I (W and Y) NDN12_RS13880 PF07290 Protein of unknown function (DUF1449) NDN12_RS13885 PF01145 SPFH domain / Band 7 family NDN12_RS13885 PF15975 Flotillin NDN12_RS13900 PF00549 CoA-ligase NDN12_RS13900 PF02629 CoA binding domain NDN12_RS13905 PF08442 ATP-grasp domain NDN12_RS13905 PF00549 CoA-ligase NDN12_RS13910 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS13910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NDN12_RS13915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NDN12_RS13915 PF00364 Biotin-requiring enzyme NDN12_RS13915 PF02817 e3 binding domain NDN12_RS13920 PF16078 2-oxoglutarate dehydrogenase N-terminus NDN12_RS13920 PF02779 Transketolase, pyrimidine binding domain NDN12_RS13920 PF16870 2-oxoglutarate dehydrogenase C-terminal NDN12_RS13920 PF00676 Dehydrogenase E1 component NDN12_RS13930 PF13085 2Fe-2S iron-sulfur cluster binding domain NDN12_RS13935 PF00890 FAD binding domain NDN12_RS13935 PF02910 Fumarate reductase flavoprotein C-term NDN12_RS13940 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN12_RS13945 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NDN12_RS13950 PF00285 Citrate synthase, C-terminal domain NDN12_RS13965 PF17773 UPF0176 acylphosphatase like domain NDN12_RS13965 PF00581 Rhodanese-like domain NDN12_RS13970 PF09335 SNARE associated Golgi protein NDN12_RS13975 PF03466 LysR substrate binding domain NDN12_RS13975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS13980 PF01810 LysE type translocator NDN12_RS13995 PF03979 Sigma-70 factor, region 1.1 NDN12_RS13995 PF04545 Sigma-70, region 4 NDN12_RS13995 PF04546 Sigma-70, non-essential region NDN12_RS13995 PF04539 Sigma-70 region 3 NDN12_RS13995 PF00140 Sigma-70 factor, region 1.2 NDN12_RS13995 PF04542 Sigma-70 region 2 NDN12_RS14000 PF04359 Protein of unknown function (DUF493) NDN12_RS14010 PF03099 Biotin/lipoate A/B protein ligase family NDN12_RS14020 PF00465 Iron-containing alcohol dehydrogenase NDN12_RS14025 PF13520 Amino acid permease NDN12_RS14030 PF03358 NADPH-dependent FMN reductase NDN12_RS14035 PF01638 HxlR-like helix-turn-helix NDN12_RS14045 PF00588 SpoU rRNA Methylase family NDN12_RS14050 PF10414 Sirohaem synthase dimerisation region NDN12_RS14050 PF14824 Sirohaem biosynthesis protein central NDN12_RS14050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NDN12_RS14055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN12_RS14055 PF02403 Seryl-tRNA synthetase N-terminal domain NDN12_RS14065 PF03548 Outer membrane lipoprotein carrier protein LolA NDN12_RS14070 PF02678 Pirin NDN12_RS14070 PF05726 Pirin C-terminal cupin domain NDN12_RS14075 PF01016 Ribosomal L27 protein NDN12_RS14080 PF00829 Ribosomal prokaryotic L21 protein NDN12_RS14085 PF00348 Polyprenyl synthetase NDN12_RS14095 PF01569 PAP2 superfamily NDN12_RS14100 PF00529 HlyD membrane-fusion protein of T1SS NDN12_RS14100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NDN12_RS14105 PF00873 AcrB/AcrD/AcrF family NDN12_RS14110 PF02321 Outer membrane efflux protein NDN12_RS14115 PF01906 Putative heavy-metal-binding NDN12_RS14120 PF01906 Putative heavy-metal-binding NDN12_RS14125 PF07690 Major Facilitator Superfamily NDN12_RS14150 PF08264 Anticodon-binding domain of tRNA NDN12_RS14150 PF00133 tRNA synthetases class I (I, L, M and V) NDN12_RS14150 PF10458 Valyl tRNA synthetase tRNA binding arm NDN12_RS14160 PF01797 Transposase IS200 like NDN12_RS14190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS14190 PF03466 LysR substrate binding domain NDN12_RS14195 PF01144 Coenzyme A transferase NDN12_RS14200 PF01144 Coenzyme A transferase NDN12_RS14205 PF02667 Short chain fatty acid transporter NDN12_RS14210 PF00909 Ammonium Transporter Family NDN12_RS14215 PF00497 Bacterial extracellular solute-binding proteins, family 3 NDN12_RS14220 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS14225 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS14230 PF00005 ABC transporter NDN12_RS14245 PF08521 Two-component sensor kinase N-terminal NDN12_RS14245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS14245 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS14250 PF00072 Response regulator receiver domain NDN12_RS14250 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS14255 PF00884 Sulfatase NDN12_RS14255 PF08019 Phosphoethanolamine transferase EptA/EptB NDN12_RS14275 PF01734 Patatin-like phospholipase NDN12_RS14285 PF01145 SPFH domain / Band 7 family NDN12_RS14290 PF04237 YjbR NDN12_RS14295 PF00348 Polyprenyl synthetase NDN12_RS14300 PF04303 PrpF protein NDN12_RS14305 PF00324 Amino acid permease NDN12_RS14315 PF00120 Glutamine synthetase, catalytic domain NDN12_RS14325 PF00593 TonB dependent receptor NDN12_RS14325 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS14335 PF01569 PAP2 superfamily NDN12_RS14345 PF03600 Citrate transporter NDN12_RS14350 PF02311 AraC-like ligand binding domain NDN12_RS14350 PF12833 Helix-turn-helix domain NDN12_RS14355 PF00171 Aldehyde dehydrogenase family NDN12_RS14360 PF05643 Putative bacterial lipoprotein (DUF799) NDN12_RS14370 PF03783 Curli production assembly/transport component CsgG NDN12_RS14375 PF00072 Response regulator receiver domain NDN12_RS14375 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS14380 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS14380 PF02702 Osmosensitive K+ channel His kinase sensor domain NDN12_RS14380 PF13493 Domain of unknown function (DUF4118) NDN12_RS14385 PF02669 K+-transporting ATPase, c chain NDN12_RS14395 PF03814 Potassium-transporting ATPase A subunit NDN12_RS14415 PF01507 Phosphoadenosine phosphosulfate reductase family NDN12_RS14420 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain NDN12_RS14420 PF06974 Protein of unknown function (DUF1298) NDN12_RS14430 PF10150 Ribonuclease E/G family NDN12_RS14430 PF00575 S1 RNA binding domain NDN12_RS14435 PF02545 Maf-like protein NDN12_RS14445 PF04085 rod shape-determining protein MreC NDN12_RS14455 PF02686 Glu-tRNAGln amidotransferase C subunit NDN12_RS14460 PF01425 Amidase NDN12_RS14465 PF02934 GatB/GatE catalytic domain NDN12_RS14465 PF02637 GatB domain NDN12_RS14500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS14500 PF03466 LysR substrate binding domain NDN12_RS14515 PF01431 Peptidase family M13 NDN12_RS14515 PF05649 Peptidase family M13 NDN12_RS14520 PF05992 SbmA/BacA-like family NDN12_RS14525 PF01734 Patatin-like phospholipase NDN12_RS14530 PF01235 Sodium:alanine symporter family NDN12_RS14535 PF03616 Sodium/glutamate symporter NDN12_RS14545 PF00881 Nitroreductase family NDN12_RS14550 PF07690 Major Facilitator Superfamily NDN12_RS14555 PF12805 FUSC-like inner membrane protein yccS NDN12_RS14565 PF00258 Flavodoxin NDN12_RS14565 PF00175 Oxidoreductase NAD-binding domain NDN12_RS14565 PF00667 FAD binding domain NDN12_RS14610 PF03734 L,D-transpeptidase catalytic domain NDN12_RS14610 PF17969 L,D-transpeptidase C-terminal domain NDN12_RS14615 PF04304 Protein of unknown function (DUF454) NDN12_RS14630 PF01546 Peptidase family M20/M25/M40 NDN12_RS14630 PF07687 Peptidase dimerisation domain NDN12_RS14640 PF00072 Response regulator receiver domain NDN12_RS14640 PF01627 Hpt domain NDN12_RS14640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS14640 PF01584 CheW-like domain NDN12_RS14645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NDN12_RS14645 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NDN12_RS14650 PF01584 CheW-like domain NDN12_RS14655 PF00072 Response regulator receiver domain NDN12_RS14660 PF00072 Response regulator receiver domain NDN12_RS14670 PF03129 Anticodon binding domain NDN12_RS14670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NDN12_RS14670 PF04073 Aminoacyl-tRNA editing domain NDN12_RS14675 PF07411 Domain of unknown function (DUF1508) NDN12_RS14680 PF03831 PhnA domain NDN12_RS14680 PF08274 PhnA Zinc-Ribbon NDN12_RS14685 PF04343 Protein of unknown function, DUF488 NDN12_RS14700 PF01571 Aminomethyltransferase folate-binding domain NDN12_RS14715 PF10411 Disulfide bond isomerase protein N-terminus NDN12_RS14715 PF13098 Thioredoxin-like domain NDN12_RS14725 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS14725 PF00593 TonB dependent receptor NDN12_RS14730 PF06827 Zinc finger found in FPG and IleRS NDN12_RS14730 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NDN12_RS14730 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NDN12_RS14745 PF01741 Large-conductance mechanosensitive channel, MscL NDN12_RS14750 PF00009 Elongation factor Tu GTP binding domain NDN12_RS14750 PF00679 Elongation factor G C-terminus NDN12_RS14750 PF03144 Elongation factor Tu domain 2 NDN12_RS14755 PF00860 Permease family NDN12_RS14760 PF05175 Methyltransferase small domain NDN12_RS14760 PF08468 Methyltransferase small domain N-terminal NDN12_RS14765 PF00324 Amino acid permease NDN12_RS14770 PF01139 tRNA-splicing ligase RtcB NDN12_RS14780 PF13505 Outer membrane protein beta-barrel domain NDN12_RS14780 PF00691 OmpA family NDN12_RS14785 PF13505 Outer membrane protein beta-barrel domain NDN12_RS14785 PF00691 OmpA family NDN12_RS14795 PF02803 Thiolase, C-terminal domain NDN12_RS14795 PF00108 Thiolase, N-terminal domain NDN12_RS14805 PF00893 Small Multidrug Resistance protein NDN12_RS14815 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NDN12_RS14815 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NDN12_RS14820 PF01011 PQQ enzyme repeat NDN12_RS14825 PF04966 Carbohydrate-selective porin, OprB family NDN12_RS14830 PF02515 CoA-transferase family III NDN12_RS14835 PF12833 Helix-turn-helix domain NDN12_RS14835 PF02311 AraC-like ligand binding domain NDN12_RS14865 PF02803 Thiolase, C-terminal domain NDN12_RS14865 PF00108 Thiolase, N-terminal domain NDN12_RS14870 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS14870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_RS14870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_RS14890 PF13673 Acetyltransferase (GNAT) domain NDN12_RS14900 PF03006 Haemolysin-III related NDN12_RS14905 PF07690 Major Facilitator Superfamily NDN12_RS14905 PF00083 Sugar (and other) transporter NDN12_RS14920 PF02810 SEC-C motif NDN12_RS14920 PF07517 SecA DEAD-like domain NDN12_RS14920 PF01043 SecA preprotein cross-linking domain NDN12_RS14920 PF07516 SecA Wing and Scaffold domain NDN12_RS14925 PF00578 AhpC/TSA family NDN12_RS14925 PF10417 C-terminal domain of 1-Cys peroxiredoxin NDN12_RS14930 PF00753 Metallo-beta-lactamase superfamily NDN12_RS14950 PF08245 Mur ligase middle domain NDN12_RS14950 PF02875 Mur ligase family, glutamate ligase domain NDN12_RS14955 PF01039 Carboxyl transferase domain NDN12_RS14960 PF00290 Tryptophan synthase alpha chain NDN12_RS14990 PF00149 Calcineurin-like phosphoesterase NDN12_RS15000 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS15005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NDN12_RS15010 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS15010 PF00593 TonB dependent receptor NDN12_RS15015 PF01923 Cobalamin adenosyltransferase NDN12_RS15035 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NDN12_RS15045 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS15045 PF00072 Response regulator receiver domain NDN12_RS15050 PF00672 HAMP domain NDN12_RS15050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS15050 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS15060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS15060 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS15060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS15060 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN12_RS15065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS15065 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS15065 PF12806 Acetyl-CoA dehydrogenase C-terminal like NDN12_RS15065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS15075 PF06146 Phosphate-starvation-inducible E NDN12_RS15105 PF00593 TonB dependent receptor NDN12_RS15105 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS15115 PF01336 OB-fold nucleic acid binding domain NDN12_RS15115 PF00152 tRNA synthetases class II (D, K and N) NDN12_RS15115 PF02938 GAD domain NDN12_RS15140 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN12_RS15145 PF01501 Glycosyl transferase family 8 NDN12_RS15145 PF00535 Glycosyl transferase family 2 NDN12_RS15150 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NDN12_RS15165 PF17101 Stealth protein CR1, conserved region 1 NDN12_RS15165 PF11380 Stealth protein CR2, conserved region 2 NDN12_RS15175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN12_RS15175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN12_RS15180 PF01370 NAD dependent epimerase/dehydratase family NDN12_RS15190 PF01063 Amino-transferase class IV NDN12_RS15195 PF08335 GlnD PII-uridylyltransferase NDN12_RS15195 PF03710 Glutamate-ammonia ligase adenylyltransferase NDN12_RS15200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS15200 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS15200 PF00989 PAS fold NDN12_RS15200 PF16736 Single Cache-like NDN12_RS15225 PF02547 Queuosine biosynthesis protein NDN12_RS15240 PF01702 Queuine tRNA-ribosyltransferase NDN12_RS15245 PF02699 Preprotein translocase subunit NDN12_RS15250 PF02355 Protein export membrane protein NDN12_RS15250 PF07549 SecD/SecF GG Motif NDN12_RS15250 PF13721 SecD export protein N-terminal TM region NDN12_RS15255 PF02355 Protein export membrane protein NDN12_RS15255 PF07549 SecD/SecF GG Motif NDN12_RS15265 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NDN12_RS15265 PF01926 50S ribosome-binding GTPase NDN12_RS15270 PF13360 PQQ-like domain NDN12_RS15280 PF03129 Anticodon binding domain NDN12_RS15280 PF13393 Histidyl-tRNA synthetase NDN12_RS15285 PF04551 GcpE protein NDN12_RS15300 PF04055 Radical SAM superfamily NDN12_RS15305 PF00334 Nucleoside diphosphate kinase NDN12_RS15310 PF04384 Iron-sulphur cluster assembly NDN12_RS15315 PF01569 PAP2 superfamily NDN12_RS15320 PF13439 Glycosyltransferase Family 4 NDN12_RS15320 PF00534 Glycosyl transferases group 1 NDN12_RS15325 PF00149 Calcineurin-like phosphoesterase NDN12_RS15330 PF00398 Ribosomal RNA adenine dimethylase NDN12_RS15335 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NDN12_RS15345 PF00572 Ribosomal protein L13 NDN12_RS15350 PF00380 Ribosomal protein S9/S16 NDN12_RS15360 PF02798 Glutathione S-transferase, N-terminal domain NDN12_RS15360 PF00043 Glutathione S-transferase, C-terminal domain NDN12_RS15365 PF04386 Stringent starvation protein B NDN12_RS15395 PF03372 Endonuclease/Exonuclease/phosphatase family NDN12_RS15420 PF18140 Propionyl-coenzyme A carboxylase BT domain NDN12_RS15420 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NDN12_RS15420 PF00364 Biotin-requiring enzyme NDN12_RS15420 PF00289 Biotin carboxylase, N-terminal domain NDN12_RS15420 PF02785 Biotin carboxylase C-terminal domain NDN12_RS15430 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS15430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS15430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS15435 PF01039 Carboxyl transferase domain NDN12_RS15450 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS15450 PF17932 Tetracyclin repressor-like, C-terminal domain NDN12_RS15455 PF13302 Acetyltransferase (GNAT) domain NDN12_RS15465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS15465 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS15465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS15520 PF01066 CDP-alcohol phosphatidyltransferase NDN12_RS15525 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NDN12_RS15545 PF00056 lactate/malate dehydrogenase, NAD binding domain NDN12_RS15545 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NDN12_RS15555 PF01551 Peptidase family M23 NDN12_RS15555 PF10145 Phage-related minor tail protein NDN12_RS15555 PF01464 Transglycosylase SLT domain NDN12_RS15560 PF00919 Uncharacterized protein family UPF0004 NDN12_RS15560 PF04055 Radical SAM superfamily NDN12_RS15560 PF01938 TRAM domain NDN12_RS15565 PF02562 PhoH-like protein NDN12_RS15570 PF02130 Uncharacterized protein family UPF0054 NDN12_RS15600 PF09234 Domain of unknown function (DUF1963) NDN12_RS15605 PF00303 Thymidylate synthase NDN12_RS15610 PF00186 Dihydrofolate reductase NDN12_RS15625 PF01625 Peptide methionine sulfoxide reductase NDN12_RS15635 PF01618 MotA/TolQ/ExbB proton channel family NDN12_RS15645 PF01842 ACT domain NDN12_RS15645 PF00551 Formyl transferase NDN12_RS15650 PF08360 QacR-like protein, C-terminal region NDN12_RS15650 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS15655 PF00171 Aldehyde dehydrogenase family NDN12_RS15660 PF00830 Ribosomal L28 family NDN12_RS15665 PF00471 Ribosomal protein L33 NDN12_RS15670 PF00999 Sodium/hydrogen exchanger family NDN12_RS15670 PF02254 TrkA-N domain NDN12_RS15700 PF00580 UvrD/REP helicase N-terminal domain NDN12_RS15700 PF13361 UvrD-like helicase C-terminal domain NDN12_RS15715 PF01396 Topoisomerase DNA binding C4 zinc finger NDN12_RS15715 PF08272 Topoisomerase I zinc-ribbon-like NDN12_RS15715 PF01751 Toprim domain NDN12_RS15715 PF01131 DNA topoisomerase NDN12_RS15725 PF01638 HxlR-like helix-turn-helix NDN12_RS15730 PF08240 Alcohol dehydrogenase GroES-like domain NDN12_RS15730 PF00107 Zinc-binding dehydrogenase NDN12_RS15735 PF04102 SlyX NDN12_RS15740 PF00005 ABC transporter NDN12_RS15740 PF16326 ABC transporter C-terminal domain NDN12_RS15740 PF12848 ABC transporter NDN12_RS15745 PF01661 Macro domain NDN12_RS15750 PF03279 Bacterial lipid A biosynthesis acyltransferase NDN12_RS15780 PF01118 Semialdehyde dehydrogenase, NAD binding domain NDN12_RS15780 PF02774 Semialdehyde dehydrogenase, dimerisation domain NDN12_RS15800 PF01416 tRNA pseudouridine synthase NDN12_RS15810 PF01176 Translation initiation factor 1A / IF-1 NDN12_RS15825 PF00180 Isocitrate/isopropylmalate dehydrogenase NDN12_RS15835 PF00694 Aconitase C-terminal domain NDN12_RS15840 PF00330 Aconitase family (aconitate hydratase) NDN12_RS15850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS15850 PF03466 LysR substrate binding domain NDN12_RS15870 PF00293 NUDIX domain NDN12_RS15875 PF01590 GAF domain NDN12_RS15875 PF05524 PEP-utilising enzyme, N-terminal NDN12_RS15875 PF00391 PEP-utilising enzyme, mobile domain NDN12_RS15875 PF02896 PEP-utilising enzyme, TIM barrel domain NDN12_RS15885 PF06628 Catalase-related immune-responsive NDN12_RS15885 PF00199 Catalase NDN12_RS15900 PF12706 Beta-lactamase superfamily domain NDN12_RS15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS15905 PF03466 LysR substrate binding domain NDN12_RS15910 PF02798 Glutathione S-transferase, N-terminal domain NDN12_RS15920 PF13419 Haloacid dehalogenase-like hydrolase NDN12_RS15925 PF00849 RNA pseudouridylate synthase NDN12_RS15925 PF01479 S4 domain NDN12_RS15935 PF12111 Polyribonucleotide phosphorylase C terminal NDN12_RS15935 PF10150 Ribonuclease E/G family NDN12_RS15935 PF00575 S1 RNA binding domain NDN12_RS15940 PF00501 AMP-binding enzyme NDN12_RS15940 PF13193 AMP-binding enzyme C-terminal domain NDN12_RS15955 PF06969 HemN C-terminal domain NDN12_RS15955 PF04055 Radical SAM superfamily NDN12_RS15965 PF01554 MatE NDN12_RS15970 PF03109 ABC1 family NDN12_RS15975 PF01197 Ribosomal protein L31 NDN12_RS15985 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NDN12_RS16000 PF01613 Flavin reductase like domain NDN12_RS16015 PF13247 4Fe-4S dicluster domain NDN12_RS16015 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NDN12_RS16015 PF07992 Pyridine nucleotide-disulphide oxidoreductase NDN12_RS16025 PF03884 DNA gyrase inhibitor YacG NDN12_RS16035 PF00753 Metallo-beta-lactamase superfamily NDN12_RS16040 PF00762 Ferrochelatase NDN12_RS16050 PF01177 Asp/Glu/Hydantoin racemase NDN12_RS16065 PF01206 Sulfurtransferase TusA NDN12_RS16070 PF03471 Transporter associated domain NDN12_RS16070 PF00571 CBS domain NDN12_RS16075 PF00795 Carbon-nitrogen hydrolase NDN12_RS16080 PF01588 Putative tRNA binding domain NDN12_RS16095 PF08334 Type II secretion system (T2SS), protein G NDN12_RS16095 PF07963 Prokaryotic N-terminal methylation motif NDN12_RS16100 PF00482 Type II secretion system (T2SS), protein F NDN12_RS16105 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NDN12_RS16105 PF18074 Primosomal protein N C-terminal domain NDN12_RS16105 PF17764 3′ DNA-binding domain (3′BD) NDN12_RS16105 PF00270 DEAD/DEAH box helicase NDN12_RS16105 PF00271 Helicase conserved C-terminal domain NDN12_RS16110 PF00999 Sodium/hydrogen exchanger family NDN12_RS16110 PF02254 TrkA-N domain NDN12_RS16115 PF01430 Hsp33 protein NDN12_RS16130 PF00226 DnaJ domain NDN12_RS16130 PF01556 DnaJ C terminal domain NDN12_RS16140 PF01544 CorA-like Mg2+ transporter protein NDN12_RS16145 PF00375 Sodium:dicarboxylate symporter family NDN12_RS16150 PF00013 KH domain NDN12_RS16150 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NDN12_RS16150 PF03725 3' exoribonuclease family, domain 2 NDN12_RS16150 PF00575 S1 RNA binding domain NDN12_RS16150 PF01138 3' exoribonuclease family, domain 1 NDN12_RS16155 PF00312 Ribosomal protein S15 NDN12_RS16160 PF00144 Beta-lactamase NDN12_RS16165 PF13538 UvrD-like helicase C-terminal domain NDN12_RS16170 PF00580 UvrD/REP helicase N-terminal domain NDN12_RS16170 PF12705 PD-(D/E)XK nuclease superfamily NDN12_RS16170 PF13361 UvrD-like helicase C-terminal domain NDN12_RS16175 PF17946 RecC C-terminal domain NDN12_RS16185 PF07690 Major Facilitator Superfamily NDN12_RS16190 PF03976 Polyphosphate kinase 2 (PPK2) NDN12_RS16200 PF01209 ubiE/COQ5 methyltransferase family NDN12_RS16210 PF03109 ABC1 family NDN12_RS16215 PF01494 FAD binding domain NDN12_RS16220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NDN12_RS16230 PF01502 Phosphoribosyl-AMP cyclohydrolase NDN12_RS16245 PF13244 Domain of unknown function (DUF4040) NDN12_RS16245 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NDN12_RS16245 PF00361 Proton-conducting membrane transporter NDN12_RS16245 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NDN12_RS16250 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NDN12_RS16255 PF00361 Proton-conducting membrane transporter NDN12_RS16260 PF01899 Na+/H+ ion antiporter subunit NDN12_RS16265 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NDN12_RS16270 PF03334 Na+/H+ antiporter subunit NDN12_RS16280 PF02033 Ribosome-binding factor A NDN12_RS16285 PF04760 Translation initiation factor IF-2, N-terminal region NDN12_RS16285 PF08364 Bacterial translation initiation factor IF-2 associated region NDN12_RS16285 PF11987 Translation-initiation factor 2 NDN12_RS16285 PF00009 Elongation factor Tu GTP binding domain NDN12_RS16290 PF13184 NusA-like KH domain NDN12_RS16290 PF00575 S1 RNA binding domain NDN12_RS16290 PF08529 NusA N-terminal domain NDN12_RS16295 PF17384 RimP C-terminal SH3 domain NDN12_RS16295 PF02576 RimP N-terminal domain NDN12_RS16315 PF03840 Preprotein translocase SecG subunit NDN12_RS16320 PF00121 Triosephosphate isomerase NDN12_RS16325 PF00437 Type II/IV secretion system protein NDN12_RS16325 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NDN12_RS16330 PF00482 Type II secretion system (T2SS), protein F NDN12_RS16335 PF06750 Bacterial Peptidase A24 N-terminal domain NDN12_RS16335 PF01478 Type IV leader peptidase family NDN12_RS16340 PF01121 Dephospho-CoA kinase NDN12_RS16350 PF00588 SpoU rRNA Methylase family NDN12_RS16350 PF08032 RNA 2'-O ribose methyltransferase substrate binding NDN12_RS16355 PF06865 Pyrimidine/purine nucleoside phosphorylase NDN12_RS16360 PF02463 RecF/RecN/SMC N terminal domain NDN12_RS16365 PF02622 Uncharacterized ACR, COG1678 NDN12_RS16370 PF03652 Holliday junction resolvase NDN12_RS16375 PF13533 Biotin-lipoyl like NDN12_RS16400 PF01066 CDP-alcohol phosphatidyltransferase NDN12_RS16410 PF01541 GIY-YIG catalytic domain NDN12_RS16410 PF02151 UvrB/uvrC motif NDN12_RS16410 PF08459 UvrC Helix-hairpin-helix N-terminal NDN12_RS16425 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NDN12_RS16425 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NDN12_RS16425 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS16430 PF02803 Thiolase, C-terminal domain NDN12_RS16430 PF00108 Thiolase, N-terminal domain NDN12_RS16445 PF00376 MerR family regulatory protein NDN12_RS16445 PF09278 MerR, DNA binding NDN12_RS16455 PF00005 ABC transporter NDN12_RS16455 PF00664 ABC transporter transmembrane region NDN12_RS16465 PF01323 DSBA-like thioredoxin domain NDN12_RS16485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS16485 PF00183 Hsp90 protein NDN12_RS16500 PF13726 Na+-H+ antiporter family NDN12_RS16500 PF03553 Na+/H+ antiporter family NDN12_RS16525 PF04997 RNA polymerase Rpb1, domain 1 NDN12_RS16525 PF04983 RNA polymerase Rpb1, domain 3 NDN12_RS16525 PF05000 RNA polymerase Rpb1, domain 4 NDN12_RS16525 PF04998 RNA polymerase Rpb1, domain 5 NDN12_RS16525 PF00623 RNA polymerase Rpb1, domain 2 NDN12_RS16530 PF04561 RNA polymerase Rpb2, domain 2 NDN12_RS16530 PF04565 RNA polymerase Rpb2, domain 3 NDN12_RS16530 PF10385 RNA polymerase beta subunit external 1 domain NDN12_RS16530 PF00562 RNA polymerase Rpb2, domain 6 NDN12_RS16530 PF04560 RNA polymerase Rpb2, domain 7 NDN12_RS16530 PF04563 RNA polymerase beta subunit NDN12_RS16535 PF00542 Ribosomal protein L7/L12 C-terminal domain NDN12_RS16535 PF16320 Ribosomal protein L7/L12 dimerisation domain NDN12_RS16540 PF00466 Ribosomal protein L10 NDN12_RS16545 PF00687 Ribosomal protein L1p/L10e family NDN12_RS16550 PF00298 Ribosomal protein L11, RNA binding domain NDN12_RS16550 PF03946 Ribosomal protein L11, N-terminal domain NDN12_RS16555 PF02357 Transcription termination factor nusG NDN12_RS16555 PF00467 KOW motif NDN12_RS16560 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NDN12_RS16570 PF03143 Elongation factor Tu C-terminal domain NDN12_RS16570 PF00009 Elongation factor Tu GTP binding domain NDN12_RS16570 PF03144 Elongation factor Tu domain 2 NDN12_RS16595 PF00425 chorismate binding enzyme NDN12_RS16595 PF04715 Anthranilate synthase component I, N terminal region NDN12_RS16600 PF13419 Haloacid dehalogenase-like hydrolase NDN12_RS16605 PF12401 Protein of unknown function (DUF2662) NDN12_RS16605 PF00498 FHA domain NDN12_RS16610 PF00263 Bacterial type II and III secretion system protein NDN12_RS16610 PF03958 Bacterial type II/III secretion system short domain NDN12_RS16625 PF00816 H-NS histone family NDN12_RS16650 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NDN12_RS16650 PF03900 Porphobilinogen deaminase, C-terminal domain NDN12_RS16655 PF00072 Response regulator receiver domain NDN12_RS16655 PF04397 LytTr DNA-binding domain NDN12_RS16660 PF07694 5TMR of 5TMR-LYT NDN12_RS16660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS16660 PF06580 Histidine kinase NDN12_RS16665 PF00206 Lyase NDN12_RS16665 PF14698 Argininosuccinate lyase C-terminal NDN12_RS16670 PF04362 Bacterial Fe(2+) trafficking NDN12_RS16675 PF01895 PhoU domain NDN12_RS16680 PF13667 ThiC-associated domain NDN12_RS16680 PF01964 Radical SAM ThiC family NDN12_RS16685 PF00293 NUDIX domain NDN12_RS16690 PF00149 Calcineurin-like phosphoesterase NDN12_RS16695 PF01258 Prokaryotic dksA/traR C4-type zinc finger NDN12_RS16700 PF00749 tRNA synthetases class I (E and Q), catalytic domain NDN12_RS16705 PF01098 Cell cycle protein NDN12_RS16710 PF02875 Mur ligase family, glutamate ligase domain NDN12_RS16710 PF08245 Mur ligase middle domain NDN12_RS16725 PF07664 Ferrous iron transport protein B C terminus NDN12_RS16725 PF02421 Ferrous iron transport protein B NDN12_RS16725 PF07670 Nucleoside recognition NDN12_RS16735 PF02899 Phage integrase, N-terminal SAM-like domain NDN12_RS16735 PF00589 Phage integrase family NDN12_RS16740 PF10411 Disulfide bond isomerase protein N-terminus NDN12_RS16740 PF13098 Thioredoxin-like domain NDN12_RS16745 PF01842 ACT domain NDN12_RS16745 PF00742 Homoserine dehydrogenase NDN12_RS16745 PF03447 Homoserine dehydrogenase, NAD binding domain NDN12_RS16750 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS16765 PF00768 D-alanyl-D-alanine carboxypeptidase NDN12_RS16770 PF00072 Response regulator receiver domain NDN12_RS16770 PF00196 Bacterial regulatory proteins, luxR family NDN12_RS16775 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS16775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS16780 PF02954 Bacterial regulatory protein, Fis family NDN12_RS16780 PF00072 Response regulator receiver domain NDN12_RS16780 PF00158 Sigma-54 interaction domain NDN12_RS16785 PF03572 Peptidase family S41 NDN12_RS16785 PF01471 Putative peptidoglycan binding domain NDN12_RS16785 PF17820 PDZ domain NDN12_RS16790 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NDN12_RS16790 PF01676 Metalloenzyme superfamily NDN12_RS16795 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN12_RS16800 PF03739 Lipopolysaccharide export system permease LptF/LptG NDN12_RS16805 PF00883 Cytosol aminopeptidase family, catalytic domain NDN12_RS16805 PF02789 Cytosol aminopeptidase family, N-terminal domain NDN12_RS16820 PF00677 Lumazine binding domain NDN12_RS16825 PF00230 Major intrinsic protein NDN12_RS16835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NDN12_RS16835 PF01872 RibD C-terminal domain NDN12_RS16840 PF03477 ATP cone domain NDN12_RS16845 PF00909 Ammonium Transporter Family NDN12_RS16850 PF00543 Nitrogen regulatory protein P-II NDN12_RS16860 PF01078 Magnesium chelatase, subunit ChlI NDN12_RS16860 PF13335 Magnesium chelatase, subunit ChlI C-terminal NDN12_RS16870 PF01925 Sulfite exporter TauE/SafE NDN12_RS16885 PF00719 Inorganic pyrophosphatase NDN12_RS16900 PF00501 AMP-binding enzyme NDN12_RS16900 PF13193 AMP-binding enzyme C-terminal domain NDN12_RS16905 PF03989 DNA gyrase C-terminal domain, beta-propeller NDN12_RS16905 PF00521 DNA gyrase/topoisomerase IV, subunit A NDN12_RS16910 PF03458 UPF0126 domain NDN12_RS16915 PF02810 SEC-C motif NDN12_RS16920 PF03471 Transporter associated domain NDN12_RS16920 PF03741 Integral membrane protein TerC family NDN12_RS16925 PF03641 Possible lysine decarboxylase NDN12_RS16935 PF07690 Major Facilitator Superfamily NDN12_RS16950 PF11798 IMS family HHH motif NDN12_RS16950 PF11799 impB/mucB/samB family C-terminal domain NDN12_RS16950 PF00817 impB/mucB/samB family NDN12_RS16955 PF00486 Transcriptional regulatory protein, C terminal NDN12_RS16955 PF00072 Response regulator receiver domain NDN12_RS16960 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS16960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS16960 PF00672 HAMP domain NDN12_RS16965 PF06123 Inner membrane protein CreD NDN12_RS16985 PF08497 Radical SAM N-terminal NDN12_RS16985 PF04055 Radical SAM superfamily NDN12_RS16985 PF11842 Domain of unknown function (DUF3362) NDN12_RS16995 PF00593 TonB dependent receptor NDN12_RS16995 PF07715 TonB-dependent Receptor Plug Domain NDN12_RS17000 PF07690 Major Facilitator Superfamily NDN12_RS17010 PF13411 MerR HTH family regulatory protein NDN12_RS17020 PF03358 NADPH-dependent FMN reductase NDN12_RS17040 PF00291 Pyridoxal-phosphate dependent enzyme NDN12_RS17075 PF02028 BCCT, betaine/carnitine/choline family transporter NDN12_RS17080 PF02515 CoA-transferase family III NDN12_RS17085 PF07690 Major Facilitator Superfamily NDN12_RS17090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS17090 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS17090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS17095 PF03466 LysR substrate binding domain NDN12_RS17115 PF00474 Sodium:solute symporter family NDN12_RS17120 PF04341 Protein of unknown function, DUF485 NDN12_RS17125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NDN12_RS17125 PF09456 RcsC Alpha-Beta-Loop (ABL) NDN12_RS17125 PF00072 Response regulator receiver domain NDN12_RS17125 PF00512 His Kinase A (phospho-acceptor) domain NDN12_RS17145 PF01327 Polypeptide deformylase NDN12_RS17150 PF01476 LysM domain NDN12_RS17155 PF17782 DprA winged helix domain NDN12_RS17155 PF02481 DNA recombination-mediator protein A NDN12_RS17160 PF01300 Telomere recombination NDN12_RS17170 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS17175 PF07690 Major Facilitator Superfamily NDN12_RS17180 PF07690 Major Facilitator Superfamily NDN12_RS17190 PF00255 Glutathione peroxidase NDN12_RS17205 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NDN12_RS17210 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN12_RS17210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_RS17215 PF00231 ATP synthase NDN12_RS17220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NDN12_RS17220 PF02874 ATP synthase alpha/beta family, beta-barrel domain NDN12_RS17220 PF00306 ATP synthase alpha/beta chain, C terminal domain NDN12_RS17225 PF00213 ATP synthase delta (OSCP) subunit NDN12_RS17230 PF00430 ATP synthase B/B' CF(0) NDN12_RS17235 PF00137 ATP synthase subunit C NDN12_RS17240 PF00119 ATP synthase A chain NDN12_RS17260 PF00005 ABC transporter NDN12_RS17265 PF00950 ABC 3 transport family NDN12_RS17270 PF01810 LysE type translocator NDN12_RS17275 PF04261 Dyp-type peroxidase family NDN12_RS17280 PF00750 tRNA synthetases class I (R) NDN12_RS17280 PF05746 DALR anticodon binding domain NDN12_RS17280 PF03485 Arginyl tRNA synthetase N terminal domain NDN12_RS17300 PF05726 Pirin C-terminal cupin domain NDN12_RS17300 PF02678 Pirin NDN12_RS17315 PF01475 Ferric uptake regulator family NDN12_RS17320 PF03551 Transcriptional regulator PadR-like family NDN12_RS17330 PF02540 NAD synthase NDN12_RS17330 PF00958 GMP synthase C terminal domain NDN12_RS17330 PF00117 Glutamine amidotransferase class-I NDN12_RS17335 PF04286 Protein of unknown function (DUF445) NDN12_RS17340 PF04076 Bacterial OB fold (BOF) protein NDN12_RS17345 PF07681 DoxX NDN12_RS17350 PF09335 SNARE associated Golgi protein NDN12_RS17365 PF13614 AAA domain NDN12_RS17375 PF01722 BolA-like protein NDN12_RS17390 PF07690 Major Facilitator Superfamily NDN12_RS17390 PF00083 Sugar (and other) transporter NDN12_RS17400 PF00378 Enoyl-CoA hydratase/isomerase NDN12_RS17405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS17405 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS17405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS17410 PF00501 AMP-binding enzyme NDN12_RS17410 PF13193 AMP-binding enzyme C-terminal domain NDN12_RS17415 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NDN12_RS17415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NDN12_RS17420 PF00171 Aldehyde dehydrogenase family NDN12_RS17425 PF03466 LysR substrate binding domain NDN12_RS17425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS17430 PF00324 Amino acid permease NDN12_RS17435 PF01042 Endoribonuclease L-PSP NDN12_RS17440 PF01168 Alanine racemase, N-terminal domain NDN12_RS17440 PF00842 Alanine racemase, C-terminal domain NDN12_RS17445 PF01266 FAD dependent oxidoreductase NDN12_RS17450 PF01037 Lrp/AsnC ligand binding domain NDN12_RS17460 PF00583 Acetyltransferase (GNAT) family NDN12_RS17465 PF00849 RNA pseudouridylate synthase NDN12_RS17505 PF00694 Aconitase C-terminal domain NDN12_RS17505 PF00330 Aconitase family (aconitate hydratase) NDN12_RS17510 PF00285 Citrate synthase, C-terminal domain NDN12_RS17520 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS17520 PF07729 FCD domain NDN12_RS17525 PF00155 Aminotransferase class I and II NDN12_RS17530 PF01565 FAD binding domain NDN12_RS17530 PF09330 D-lactate dehydrogenase, membrane binding NDN12_RS17535 PF01070 FMN-dependent dehydrogenase NDN12_RS17540 PF07729 FCD domain NDN12_RS17540 PF00392 Bacterial regulatory proteins, gntR family NDN12_RS17545 PF02652 L-lactate permease NDN12_RS17550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NDN12_RS17550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NDN12_RS17550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NDN12_RS17550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NDN12_RS17555 PF16363 GDP-mannose 4,6 dehydratase NDN12_RS17560 PF00342 Phosphoglucose isomerase NDN12_RS17565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN12_RS17565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN12_RS17565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN12_RS17570 PF00483 Nucleotidyl transferase NDN12_RS17575 PF02719 Polysaccharide biosynthesis protein NDN12_RS17580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDN12_RS17585 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS17585 PF14602 Hexapeptide repeat of succinyl-transferase NDN12_RS17585 PF17836 PglD N-terminal domain NDN12_RS17590 PF02397 Bacterial sugar transferase NDN12_RS17620 PF00534 Glycosyl transferases group 1 NDN12_RS17620 PF13439 Glycosyltransferase Family 4 NDN12_RS17625 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NDN12_RS17630 PF00132 Bacterial transferase hexapeptide (six repeats) NDN12_RS17635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NDN12_RS17635 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NDN12_RS17640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NDN12_RS17640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NDN12_RS17640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NDN12_RS17645 PF02350 UDP-N-acetylglucosamine 2-epimerase NDN12_RS17650 PF02563 Polysaccharide biosynthesis/export protein NDN12_RS17650 PF10531 SLBB domain NDN12_RS17650 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NDN12_RS17655 PF01451 Low molecular weight phosphotyrosine protein phosphatase NDN12_RS17660 PF02706 Chain length determinant protein NDN12_RS17660 PF13807 G-rich domain on putative tyrosine kinase NDN12_RS17660 PF13614 AAA domain NDN12_RS17665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN12_RS17665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_RS17670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NDN12_RS17670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_RS17675 PF01757 Acyltransferase family NDN12_RS17675 PF01168 Alanine racemase, N-terminal domain NDN12_RS17675 PF00842 Alanine racemase, C-terminal domain NDN12_RS17680 PF03023 Lipid II flippase MurJ NDN12_RS17685 PF01510 N-acetylmuramoyl-L-alanine amidase NDN12_RS17690 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NDN12_RS17690 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NDN12_RS17705 PF05506 Domain of unknown function (DUF756) NDN12_RS17705 PF04185 Phosphoesterase family NDN12_RS17710 PF03725 3' exoribonuclease family, domain 2 NDN12_RS17710 PF01138 3' exoribonuclease family, domain 1 NDN12_RS17715 PF00487 Fatty acid desaturase NDN12_RS17720 PF00175 Oxidoreductase NAD-binding domain NDN12_RS17725 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS17730 PF08360 QacR-like protein, C-terminal region NDN12_RS17730 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS17735 PF01323 DSBA-like thioredoxin domain NDN12_RS17745 PF13419 Haloacid dehalogenase-like hydrolase NDN12_RS17750 PF00106 short chain dehydrogenase NDN12_RS17760 PF00583 Acetyltransferase (GNAT) family NDN12_RS17760 PF00696 Amino acid kinase family NDN12_RS17765 PF09084 NMT1/THI5 like NDN12_RS17770 PF09084 NMT1/THI5 like NDN12_RS17775 PF00296 Luciferase-like monooxygenase NDN12_RS17780 PF00528 Binding-protein-dependent transport system inner membrane component NDN12_RS17785 PF00005 ABC transporter NDN12_RS17790 PF17938 Tetracyclin repressor-like, C-terminal domain NDN12_RS17790 PF00440 Bacterial regulatory proteins, tetR family NDN12_RS17815 PF01048 Phosphorylase superfamily NDN12_RS17825 PF01687 Riboflavin kinase NDN12_RS17825 PF06574 FAD synthetase NDN12_RS17830 PF06827 Zinc finger found in FPG and IleRS NDN12_RS17830 PF00133 tRNA synthetases class I (I, L, M and V) NDN12_RS17830 PF08264 Anticodon-binding domain of tRNA NDN12_RS17835 PF01252 Signal peptidase (SPase) II NDN12_RS17840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NDN12_RS17850 PF02463 RecF/RecN/SMC N terminal domain NDN12_RS17885 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NDN12_RS17890 PF07859 alpha/beta hydrolase fold NDN12_RS17905 PF03466 LysR substrate binding domain NDN12_RS17905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS17910 PF01025 GrpE NDN12_RS17915 PF00012 Hsp70 protein NDN12_RS17920 PF12706 Beta-lactamase superfamily domain NDN12_RS17950 PF13406 Transglycosylase SLT domain NDN12_RS17955 PF02222 ATP-grasp domain NDN12_RS17955 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NDN12_RS17960 PF00731 AIR carboxylase NDN12_RS17970 PF01225 Mur ligase family, catalytic domain NDN12_RS17970 PF02875 Mur ligase family, glutamate ligase domain NDN12_RS17970 PF08245 Mur ligase middle domain NDN12_RS17975 PF00106 short chain dehydrogenase NDN12_RS17990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NDN12_RS17990 PF02770 Acyl-CoA dehydrogenase, middle domain NDN12_RS17990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NDN12_RS17995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NDN12_RS17995 PF03466 LysR substrate binding domain NDN12_RS18005 PF03741 Integral membrane protein TerC family NDN12_RS18020 PF03738 Glutathionylspermidine synthase preATP-grasp NDN12_RS18040 PF01979 Amidohydrolase family NDN12_RS18045 PF00156 Phosphoribosyl transferase domain NDN12_RS18050 PF04226 Transglycosylase associated protein NDN12_RS18055 PF13098 Thioredoxin-like domain NDN12_RS18055 PF10411 Disulfide bond isomerase protein N-terminus NDN12_RS18060 PF00437 Type II/IV secretion system protein NDN12_RS18070 PF01926 50S ribosome-binding GTPase NDN12_RS18070 PF12631 MnmE helical domain NDN12_RS18070 PF10396 GTP-binding protein TrmE N-terminus NDN12_RS18075 PF02096 60Kd inner membrane protein NDN12_RS18075 PF14849 YidC periplasmic domain NDN12_RS18080 PF01809 Putative membrane protein insertion efficiency factor NDN12_RS18085 PF00825 Ribonuclease P NDN12_RS18090 PF00468 Ribosomal protein L34