A3K93_RS00005	SM00387	Histidine kinase-like ATPases
A3K93_RS00005	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS00005	SM00448	cheY-homologous receiver domain
A3K93_RS00010	SM00421	helix_turn_helix, Lux Regulon
A3K93_RS00010	SM00448	cheY-homologous receiver domain
A3K93_RS00060	SM00267	diguanylate cyclase
A3K93_RS00100	SM00357	Cold shock protein domain
A3K93_RS00140	SM00842	Cell division protein FtsA
A3K93_RS00145	SM00864	Tubulin/FtsZ family, GTPase domain
A3K93_RS00145	SM00865	Tubulin/FtsZ family, C-terminal domain
A3K93_RS00180	SM00849	Metallo-beta-lactamase superfamily
A3K93_RS00200	SM01321	A3K93_RS00200
A3K93_RS00205	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3K93_RS00205	SM01240	A3K93_RS00205
A3K93_RS00235	SM00937	A3K93_RS00235
A3K93_RS00240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3K93_RS00280	SM01321	A3K93_RS00280
A3K93_RS00310	SM00421	helix_turn_helix, Lux Regulon
A3K93_RS00310	SM00448	cheY-homologous receiver domain
A3K93_RS00320	SM00387	Histidine kinase-like ATPases
A3K93_RS00320	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS00320	SM00448	cheY-homologous receiver domain
A3K93_RS00345	SM00267	diguanylate cyclase
A3K93_RS00455	SM00477	DNA/RNA non-specific endonuclease
A3K93_RS00455	SM00892	DNA/RNA non-specific endonuclease
A3K93_RS00460	SM00477	DNA/RNA non-specific endonuclease
A3K93_RS00460	SM00892	DNA/RNA non-specific endonuclease
A3K93_RS00480	SM00318	Staphylococcal nuclease homologues
A3K93_RS00485	SM00530	Helix-turn-helix XRE-family like proteins 
A3K93_RS00520	SM01321	A3K93_RS00520
A3K93_RS00530	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS00590	SM00474	3'-5' exonuclease
A3K93_RS00665	SM00267	diguanylate cyclase
A3K93_RS00675	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS00675	SM01086	C-terminal, D2-small domain, of ClpB protein
A3K93_RS00680	SM00465	GIY-YIG type nucleases (URI domain)
A3K93_RS00710	SM00448	cheY-homologous receiver domain
A3K93_RS00710	SM00850	LytTr DNA-binding domain
A3K93_RS00740	SM00528	Domain in histone-like proteins of HNS family
A3K93_RS00760	SM00240	Forkhead associated domain
A3K93_RS00810	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
A3K93_RS00810	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3K93_RS00815	SM00649	Ribosomal protein L11/L12
A3K93_RS00840	SM00663	RNA polymerase I subunit A N-terminus
A3K93_RS00880	SM00387	Histidine kinase-like ATPases
A3K93_RS00920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3K93_RS00920	SM00387	Histidine kinase-like ATPases
A3K93_RS00920	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS00925	SM00448	cheY-homologous receiver domain
A3K93_RS00925	SM00862	Transcriptional regulatory protein, C terminal
A3K93_RS00930	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS00930	SM00732	Likely ribonuclease with RNase H fold.
A3K93_RS01020	SM01387	A3K93_RS01020
A3K93_RS01025	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS01025	SM00322	K homology RNA-binding domain
A3K93_RS01055	SM00487	DEAD-like helicases superfamily
A3K93_RS01055	SM00490	helicase superfamily c-terminal domain
A3K93_RS01080	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3K93_RS01080	SM01091	Transporter associated domain
A3K93_RS01115	SM00849	Metallo-beta-lactamase superfamily
A3K93_RS01190	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3K93_RS01240	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS01245	SM00363	S4 RNA-binding domain
A3K93_RS01260	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A3K93_RS01330	SM01060	A3K93_RS01330
A3K93_RS01340	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
A3K93_RS01390	SM01329	A3K93_RS01390
A3K93_RS01400	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS01405	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS01415	SM00870	A3K93_RS01415
A3K93_RS01430	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A3K93_RS01445	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS01470	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
A3K93_RS01470	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
A3K93_RS01470	SM00493	A3K93_RS01470
A3K93_RS01485	SM00360	RNA recognition motif
A3K93_RS01605	SM00671	Sel1-like repeats.
A3K93_RS01620	SM00917	LeuA allosteric (dimerisation) domain
A3K93_RS01625	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A3K93_RS01645	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS01645	SM00994	ClpX C4-type zinc finger
A3K93_RS01645	SM01086	C-terminal, D2-small domain, of ClpB protein
A3K93_RS01690	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3K93_RS01690	SM00245	tail specific protease
A3K93_RS01695	SM00052	Putative diguanylate phosphodiesterase
A3K93_RS01695	SM00267	diguanylate cyclase
A3K93_RS01735	SM00450	Rhodanese Homology Domain
A3K93_RS01745	SM00479	A3K93_RS01745
A3K93_RS01755	SM00671	Sel1-like repeats.
A3K93_RS01765	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS01830	SM00562	A3K93_RS01830
A3K93_RS01840	SM00028	Tetratricopeptide repeats
A3K93_RS01865	SM00564	beta-propeller repeat
A3K93_RS01895	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3K93_RS01935	SM00387	Histidine kinase-like ATPases
A3K93_RS01935	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS02050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3K93_RS02050	SM00387	Histidine kinase-like ATPases
A3K93_RS02050	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS02055	SM00448	cheY-homologous receiver domain
A3K93_RS02055	SM00862	Transcriptional regulatory protein, C terminal
A3K93_RS02130	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS02165	SM00957	SecA DEAD-like domain
A3K93_RS02165	SM00958	SecA preprotein cross-linking domain
A3K93_RS02215	SM00267	diguanylate cyclase
A3K93_RS02420	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS02420	SM00962	SRP54-type protein, GTPase domain
A3K93_RS02420	SM00963	SRP54-type protein, helical bundle domain
A3K93_RS02450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3K93_RS02460	SM00771	ZipA, C-terminal domain (FtsZ-binding)
A3K93_RS02465	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3K93_RS02465	SM00292	breast cancer carboxy-terminal domain
A3K93_RS02465	SM00532	Ligase N family
A3K93_RS02500	SM00363	S4 RNA-binding domain
A3K93_RS02535	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
A3K93_RS02540	SM00822	A3K93_RS02540
A3K93_RS02550	SM00257	Lysin motif
A3K93_RS02555	SM00344	helix_turn_helix ASNC type
A3K93_RS02565	SM01005	Alanine racemase, C-terminal domain
A3K93_RS02585	SM00825	Beta-ketoacyl synthase
A3K93_RS02605	SM00838	Elongation factor G C-terminus
A3K93_RS02605	SM00889	Elongation factor G, domain IV
A3K93_RS02640	SM00843	A3K93_RS02640
A3K93_RS02670	SM00563	Phosphate acyltransferases
A3K93_RS02730	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS02735	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS02760	SM01004	Delta-aminolevulinic acid dehydratase
A3K93_RS02870	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3K93_RS02890	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS02955	SM00903	Flavin reductase like domain
A3K93_RS02970	SM00346	helix_turn_helix isocitrate lyase regulation
A3K93_RS02990	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3K93_RS03030	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS03050	SM00845	GatB domain
A3K93_RS03085	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS03155	SM00244	prohibitin homologues
A3K93_RS03165	SM00563	Phosphate acyltransferases
A3K93_RS03190	SM00267	diguanylate cyclase
A3K93_RS03245	SM00822	A3K93_RS03245
A3K93_RS03250	SM00267	diguanylate cyclase
A3K93_RS03265	SM01120	A3K93_RS03265
A3K93_RS03295	SM01018	B12 binding domain
A3K93_RS03350	SM00947	Carbonic anhydrase
A3K93_RS03360	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS03505	SM00861	Transketolase, pyrimidine binding domain
A3K93_RS03525	SM00881	CoA binding domain
A3K93_RS03570	SM00829	Enoylreductase
A3K93_RS03615	SM00046	Diacylglycerol kinase catalytic domain (presumed)
A3K93_RS03625	SM00883	Chaperonin 10 Kd subunit
A3K93_RS03700	SM00478	endonuclease III
A3K93_RS03710	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
A3K93_RS03735	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS03735	SM00464	Found in ATP-dependent protease La (LON)
A3K93_RS03800	SM00530	Helix-turn-helix XRE-family like proteins 
A3K93_RS03850	SM01011	Aminopeptidase P, N-terminal domain
A3K93_RS03925	SM00479	A3K93_RS03925
A3K93_RS03930	SM00257	Lysin motif
A3K93_RS03950	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS03965	SM01236	A3K93_RS03965
A3K93_RS04000	SM00479	A3K93_RS04000
A3K93_RS04010	SM00267	diguanylate cyclase
A3K93_RS04065	SM00267	diguanylate cyclase
A3K93_RS04090	SM00463	Small MutS-related domain
A3K93_RS04110	SM01230	A3K93_RS04110
A3K93_RS04180	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3K93_RS04190	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3K93_RS04220	SM00487	DEAD-like helicases superfamily
A3K93_RS04220	SM00490	helicase superfamily c-terminal domain
A3K93_RS04235	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A3K93_RS04275	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
A3K93_RS04280	SM00014	Acid phosphatase homologues
A3K93_RS04315	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS04380	SM00936	Penicillin-binding protein 5, C-terminal domain 
A3K93_RS04400	SM00257	Lysin motif
A3K93_RS04445	SM00052	Putative diguanylate phosphodiesterase
A3K93_RS04445	SM00091	PAS domain
A3K93_RS04460	SM00841	Elongation factor P, C-terminal
A3K93_RS04460	SM01185	A3K93_RS04460
A3K93_RS04490	SM00460	Transglutaminase/protease-like homologues
A3K93_RS04515	SM00100	Cyclic nucleotide-monophosphate binding domain
A3K93_RS04515	SM00419	helix_turn_helix, cAMP Regulatory protein
A3K93_RS04525	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS04525	SM01086	C-terminal, D2-small domain, of ClpB protein
A3K93_RS04530	SM00981	A3K93_RS04530
A3K93_RS04595	SM00357	Cold shock protein domain
A3K93_RS04600	SM00487	DEAD-like helicases superfamily
A3K93_RS04600	SM00490	helicase superfamily c-terminal domain
A3K93_RS04620	SM00855	Phosphoglycerate mutase family
A3K93_RS04715	SM00220	Serine/Threonine protein kinases, catalytic domain
A3K93_RS04765	SM00849	Metallo-beta-lactamase superfamily
A3K93_RS04770	SM00903	Flavin reductase like domain
A3K93_RS04805	SM01118	A3K93_RS04805
A3K93_RS04855	SM00487	DEAD-like helicases superfamily
A3K93_RS04855	SM00490	helicase superfamily c-terminal domain
A3K93_RS04955	SM00861	Transketolase, pyrimidine binding domain
A3K93_RS04970	SM00867	YceI-like domain 
A3K93_RS04995	SM00840	A3K93_RS04995
A3K93_RS05000	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3K93_RS05020	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS05030	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS05070	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
A3K93_RS05070	SM00534	ATPase domain of DNA mismatch repair MUTS family
A3K93_RS05075	SM00267	diguanylate cyclase
A3K93_RS05105	SM00481	DNA polymerase alpha chain like domain
A3K93_RS05115	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS05115	SM00930	A3K93_RS05115
A3K93_RS05170	SM01209	A3K93_RS05170
A3K93_RS05170	SM01210	A3K93_RS05170
A3K93_RS05175	SM00798	AICARFT/IMPCHase bienzyme
A3K93_RS05175	SM00851	MGS-like domain
A3K93_RS05215	SM01228	A3K93_RS05215
A3K93_RS05230	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS05230	SM00448	cheY-homologous receiver domain
A3K93_RS05235	SM00091	PAS domain
A3K93_RS05235	SM00387	Histidine kinase-like ATPases
A3K93_RS05235	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS05240	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3K93_RS05270	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3K93_RS05280	SM00935	Outer membrane protein (OmpH-like)
A3K93_RS05315	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS05320	SM00363	S4 RNA-binding domain
A3K93_RS05375	SM00421	helix_turn_helix, Lux Regulon
A3K93_RS05385	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
A3K93_RS05450	SM00450	Rhodanese Homology Domain
A3K93_RS05505	SM00344	helix_turn_helix ASNC type
A3K93_RS05515	SM00487	DEAD-like helicases superfamily
A3K93_RS05515	SM00490	helicase superfamily c-terminal domain
A3K93_RS05515	SM00982	A3K93_RS05515
A3K93_RS05515	SM01058	CarD-like/TRCF domain
A3K93_RS05525	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
A3K93_RS05550	SM00271	DnaJ molecular chaperone homology domain
A3K93_RS05585	SM00411	bacterial (prokaryotic) histone like domain
A3K93_RS05630	SM01264	A3K93_RS05630
A3K93_RS05665	SM00062	Bacterial periplasmic substrate-binding proteins
A3K93_RS05670	SM00450	Rhodanese Homology Domain
A3K93_RS05675	SM00859	Semialdehyde dehydrogenase, NAD binding domain
A3K93_RS05690	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS05690	SM01086	C-terminal, D2-small domain, of ClpB protein
A3K93_RS05755	SM00267	diguanylate cyclase
A3K93_RS05765	SM00878	Biotin carboxylase C-terminal domain
A3K93_RS05785	SM00563	Phosphate acyltransferases
A3K93_RS05795	SM00195	Dual specificity phosphatase, catalytic domain
A3K93_RS05955	SM00267	diguanylate cyclase
A3K93_RS06030	SM00988	UreE urease accessory protein, N-terminal domain
A3K93_RS06050	SM00422	helix_turn_helix, mercury resistance
A3K93_RS06065	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
A3K93_RS06090	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS06100	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS06125	SM00829	Enoylreductase
A3K93_RS06130	SM00155	Phospholipase D. Active site motifs.
A3K93_RS06170	SM00855	Phosphoglycerate mutase family
A3K93_RS06190	SM00318	Staphylococcal nuclease homologues
A3K93_RS06195	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3K93_RS06210	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS06330	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS06330	SM00962	SRP54-type protein, GTPase domain
A3K93_RS06330	SM00963	SRP54-type protein, helical bundle domain
A3K93_RS06365	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3K93_RS06380	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS06395	SM00474	3'-5' exonuclease
A3K93_RS06400	SM00493	A3K93_RS06400
A3K93_RS06425	SM01324	A3K93_RS06425
A3K93_RS06490	SM01192	A3K93_RS06490
A3K93_RS06490	SM01193	A3K93_RS06490
A3K93_RS06655	SM00905	Dihydroneopterin aldolase
A3K93_RS06685	SM00822	A3K93_RS06685
A3K93_RS06710	SM00937	A3K93_RS06710
A3K93_RS06805	SM01005	Alanine racemase, C-terminal domain
A3K93_RS06810	SM01034	Sensors of blue-light using FAD
A3K93_RS06820	SM00460	Transglutaminase/protease-like homologues
A3K93_RS06860	SM00226	Low molecular weight phosphatase family
A3K93_RS06875	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS06890	SM00822	A3K93_RS06890
A3K93_RS06970	SM00347	helix_turn_helix multiple antibiotic resistance protein
A3K93_RS06995	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS07010	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
A3K93_RS07020	SM00411	bacterial (prokaryotic) histone like domain
A3K93_RS07025	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS07050	SM00986	Uracil DNA glycosylase superfamily
A3K93_RS07050	SM00987	UreE urease accessory protein, C-terminal domain 
A3K93_RS07110	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS07125	SM00470	ParB-like nuclease domain
A3K93_RS07170	SM00853	MutL C terminal dimerisation domain
A3K93_RS07170	SM01340	A3K93_RS07170
A3K93_RS07195	SM00363	S4 RNA-binding domain
A3K93_RS07210	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS07220	SM00563	Phosphate acyltransferases
A3K93_RS07230	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS07230	SM00487	DEAD-like helicases superfamily
A3K93_RS07230	SM00490	helicase superfamily c-terminal domain
A3K93_RS07230	SM00847	Helicase associated domain (HA2)  Add an annotation
A3K93_RS07305	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3K93_RS07305	SM00876	Biotin and Thiamin Synthesis associated domain
A3K93_RS07330	SM00563	Phosphate acyltransferases
A3K93_RS07340	SM00344	helix_turn_helix ASNC type
A3K93_RS07365	SM00100	Cyclic nucleotide-monophosphate binding domain
A3K93_RS07390	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3K93_RS07430	SM00095	Transthyretin
A3K93_RS07490	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3K93_RS07530	SM00788	Adenylosuccinate synthetase
A3K93_RS07545	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
A3K93_RS07555	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3K93_RS07620	SM00830	Chorismate mutase type II
A3K93_RS07670	SM00387	Histidine kinase-like ATPases
A3K93_RS07670	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS07675	SM00448	cheY-homologous receiver domain
A3K93_RS07675	SM00862	Transcriptional regulatory protein, C terminal
A3K93_RS07685	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS07705	SM00564	beta-propeller repeat
A3K93_RS07770	SM00479	A3K93_RS07770
A3K93_RS07810	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS07910	SM00358	Double-stranded RNA binding motif
A3K93_RS07910	SM00535	Ribonuclease III family
A3K93_RS07925	SM00838	Elongation factor G C-terminus
A3K93_RS07935	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
A3K93_RS08000	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS08050	SM00867	YceI-like domain 
A3K93_RS08100	SM01211	A3K93_RS08100
A3K93_RS08110	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3K93_RS08115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
A3K93_RS08120	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS08245	SM00849	Metallo-beta-lactamase superfamily
A3K93_RS08250	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS08310	SM00434	DNA Topoisomerase IV
A3K93_RS08325	SM00893	Electron transfer flavoprotein domain
A3K93_RS08330	SM00893	Electron transfer flavoprotein domain
A3K93_RS08340	SM00344	helix_turn_helix ASNC type
A3K93_RS08385	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS08390	SM00978	A3K93_RS08390
A3K93_RS08395	SM00671	Sel1-like repeats.
A3K93_RS08405	SM00996	S-adenosyl-L-homocysteine hydrolase
A3K93_RS08405	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
A3K93_RS08420	SM00052	Putative diguanylate phosphodiesterase
A3K93_RS08420	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
A3K93_RS08420	SM00091	PAS domain
A3K93_RS08420	SM00267	diguanylate cyclase
A3K93_RS08425	SM00919	Malic enzyme, NAD binding domain
A3K93_RS08425	SM01274	A3K93_RS08425
A3K93_RS08510	SM00116	Domain in cystathionine beta-synthase and other proteins.
A3K93_RS08510	SM00924	MgtE intracellular N domain
A3K93_RS08530	SM01091	Transporter associated domain
A3K93_RS08585	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS08595	SM01103	A3K93_RS08595
A3K93_RS08610	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
A3K93_RS08615	SM00851	MGS-like domain
A3K93_RS08615	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
A3K93_RS08670	SM00363	S4 RNA-binding domain
A3K93_RS08680	SM00400	zinc finger
A3K93_RS08680	SM00493	A3K93_RS08680
A3K93_RS08690	SM00028	Tetratricopeptide repeats
A3K93_RS08725	SM01400	A3K93_RS08725
A3K93_RS08760	SM00450	Rhodanese Homology Domain
A3K93_RS08865	SM00014	Acid phosphatase homologues
A3K93_RS08930	SM01322	A3K93_RS08930
A3K93_RS09075	SM00073	Histidine Phosphotransfer domain
A3K93_RS09075	SM00260	Two component signalling adaptor domain
A3K93_RS09075	SM00387	Histidine kinase-like ATPases
A3K93_RS09075	SM00448	cheY-homologous receiver domain
A3K93_RS09075	SM01231	A3K93_RS09075
A3K93_RS09080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
A3K93_RS09085	SM00260	Two component signalling adaptor domain
A3K93_RS09090	SM00448	cheY-homologous receiver domain
A3K93_RS09095	SM00448	cheY-homologous receiver domain
A3K93_RS09170	SM00849	Metallo-beta-lactamase superfamily
A3K93_RS09230	SM00357	Cold shock protein domain
A3K93_RS09275	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
A3K93_RS09275	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
A3K93_RS09280	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
A3K93_RS09310	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
A3K93_RS09310	SM00387	Histidine kinase-like ATPases
A3K93_RS09310	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS09315	SM00448	cheY-homologous receiver domain
A3K93_RS09315	SM00862	Transcriptional regulatory protein, C terminal
A3K93_RS09355	SM00564	beta-propeller repeat
A3K93_RS09480	SM00671	Sel1-like repeats.
A3K93_RS09500	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
A3K93_RS09500	SM01232	A3K93_RS09500
A3K93_RS09520	SM00838	Elongation factor G C-terminus
A3K93_RS09575	SM00342	helix_turn_helix, arabinose operon control protein
A3K93_RS09625	SM00155	Phospholipase D. Active site motifs.
A3K93_RS09630	SM00563	Phosphate acyltransferases
A3K93_RS09665	SM00650	Ribosomal RNA adenine dimethylases
A3K93_RS09750	SM00331	Sigma factor PP2C-like phosphatases
A3K93_RS09770	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS09790	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
A3K93_RS09790	SM00474	3'-5' exonuclease
A3K93_RS09790	SM00475	5'-3' exonuclease
A3K93_RS09790	SM00482	DNA polymerase A domain
A3K93_RS09805	SM00977	TilS substrate C-terminal domain
A3K93_RS09825	SM00357	Cold shock protein domain
A3K93_RS09825	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS09825	SM00959	Rho termination factor, N-terminal domain
A3K93_RS09835	SM00411	bacterial (prokaryotic) histone like domain
A3K93_RS09840	SM00873	B3/4 domain
A3K93_RS09840	SM00874	tRNA synthetase B5 domain
A3K93_RS09840	SM00896	Ferredoxin-fold anticodon binding domain
A3K93_RS09915	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
A3K93_RS09970	SM01323	A3K93_RS09970
A3K93_RS09990	SM00954	Region found in RelA / SpoT proteins
A3K93_RS10010	SM00073	Histidine Phosphotransfer domain
A3K93_RS10010	SM00387	Histidine kinase-like ATPases
A3K93_RS10010	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS10010	SM00448	cheY-homologous receiver domain
A3K93_RS10055	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
A3K93_RS10055	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
A3K93_RS10095	SM00481	DNA polymerase alpha chain like domain
A3K93_RS10120	SM00450	Rhodanese Homology Domain
A3K93_RS10210	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
A3K93_RS10250	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3K93_RS10350	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS10350	SM00955	A3K93_RS10350
A3K93_RS10420	SM00662	RNA polymerases D
A3K93_RS10425	SM00363	S4 RNA-binding domain
A3K93_RS10425	SM01390	A3K93_RS10425
A3K93_RS10490	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
A3K93_RS10495	SM01374	A3K93_RS10495
A3K93_RS10515	SM00322	K homology RNA-binding domain
A3K93_RS10530	SM01382	A3K93_RS10530
A3K93_RS10530	SM01383	A3K93_RS10530
A3K93_RS10550	SM01403	A3K93_RS10550
A3K93_RS10565	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS10600	SM00563	Phosphate acyltransferases
A3K93_RS10610	SM00487	DEAD-like helicases superfamily
A3K93_RS10610	SM00490	helicase superfamily c-terminal domain
A3K93_RS10655	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS10660	SM00487	DEAD-like helicases superfamily
A3K93_RS10660	SM00490	helicase superfamily c-terminal domain
A3K93_RS10670	SM00861	Transketolase, pyrimidine binding domain
A3K93_RS10680	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3K93_RS10710	SM00357	Cold shock protein domain
A3K93_RS10720	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3K93_RS10925	SM01321	A3K93_RS10925
A3K93_RS10960	SM00072	Guanylate kinase homologues.
A3K93_RS10965	SM01409	A3K93_RS10965
A3K93_RS10970	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
A3K93_RS10970	SM00954	Region found in RelA / SpoT proteins
A3K93_RS11085	SM00822	A3K93_RS11085
A3K93_RS11115	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS11185	SM00965	Secretin and TonB N terminus short domain
A3K93_RS11295	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS11305	SM00822	A3K93_RS11305
A3K93_RS11325	SM01321	A3K93_RS11325
A3K93_RS11375	SM00316	Ribosomal protein S1-like RNA-binding domain
A3K93_RS11445	SM00967	RNA 2'-O ribose methyltransferase substrate binding
A3K93_RS11465	SM00732	Likely ribonuclease with RNase H fold.
A3K93_RS11495	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS11565	SM00899	A3K93_RS11565
A3K93_RS11580	SM01321	A3K93_RS11580
A3K93_RS11605	SM00421	helix_turn_helix, Lux Regulon
A3K93_RS11605	SM00448	cheY-homologous receiver domain
A3K93_RS11610	SM00387	Histidine kinase-like ATPases
A3K93_RS11610	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS11615	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS11615	SM00448	cheY-homologous receiver domain
A3K93_RS11620	SM00245	tail specific protease
A3K93_RS11685	SM00938	Nitrogen regulatory protein P-II
A3K93_RS11695	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS11730	SM00434	DNA Topoisomerase IV
A3K93_RS11750	SM01091	Transporter associated domain
A3K93_RS11770	SM00641	Glycosyl hydrolases family 25
A3K93_RS11795	SM00729	Elongator protein 3, MiaB family, Radical SAM
A3K93_RS11840	SM00257	Lysin motif
A3K93_RS11890	SM00954	Region found in RelA / SpoT proteins
A3K93_RS11900	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS11950	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS11990	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS12000	SM00822	A3K93_RS12000
A3K93_RS12010	SM00448	cheY-homologous receiver domain
A3K93_RS12010	SM00862	Transcriptional regulatory protein, C terminal
A3K93_RS12015	SM00091	PAS domain
A3K93_RS12015	SM00387	Histidine kinase-like ATPases
A3K93_RS12015	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS12035	SM00267	diguanylate cyclase
A3K93_RS12055	SM00267	diguanylate cyclase
A3K93_RS12170	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS12200	SM00984	UDP binding domain
A3K93_RS12275	SM00984	UDP binding domain
A3K93_RS12365	SM00984	UDP binding domain
A3K93_RS12375	SM00226	Low molecular weight phosphatase family
A3K93_RS12405	SM00478	endonuclease III
A3K93_RS12425	SM00829	Enoylreductase
A3K93_RS12430	SM00345	helix_turn_helix gluconate operon transcriptional repressor
A3K93_RS12450	SM00271	DnaJ molecular chaperone homology domain
A3K93_RS12495	SM00830	Chorismate mutase type II
A3K93_RS12540	SM00248	ankyrin repeats
A3K93_RS12615	SM00235	Zinc-dependent metalloprotease
A3K93_RS12645	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS12650	SM00829	Enoylreductase
A3K93_RS12660	SM00387	Histidine kinase-like ATPases
A3K93_RS12660	SM00433	TopoisomeraseII
A3K93_RS12670	SM00480	DNA polymerase III beta subunit
A3K93_RS12675	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS12675	SM00760	Bacterial dnaA protein helix-turn-helix domain
A3K93_RS12690	SM01234	A3K93_RS12690
A3K93_RS12765	SM01321	A3K93_RS12765
A3K93_RS12780	SM01001	AIR carboxylase
A3K93_RS12845	SM00267	diguanylate cyclase
A3K93_RS12875	SM00904	Riboflavin kinase
A3K93_RS12895	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS12910	SM00062	Bacterial periplasmic substrate-binding proteins
A3K93_RS12915	SM00062	Bacterial periplasmic substrate-binding proteins
A3K93_RS12975	SM00644	A3K93_RS12975
A3K93_RS12995	SM00052	Putative diguanylate phosphodiesterase
A3K93_RS12995	SM00091	PAS domain
A3K93_RS12995	SM00267	diguanylate cyclase
A3K93_RS13000	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS13015	SM01130	A3K93_RS13015
A3K93_RS13065	SM01060	A3K93_RS13065
A3K93_RS13070	SM00248	ankyrin repeats
A3K93_RS13085	SM00450	Rhodanese Homology Domain
A3K93_RS13100	SM00836	DALR anticodon binding domain
A3K93_RS13100	SM01016	Arginyl tRNA synthetase N terminal dom
A3K93_RS13150	SM00387	Histidine kinase-like ATPases
A3K93_RS13150	SM00433	TopoisomeraseII
A3K93_RS13155	SM00834	Putative regulatory protein
A3K93_RS13165	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS13165	SM01086	C-terminal, D2-small domain, of ClpB protein
A3K93_RS13175	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS13180	SM00382	ATPases associated with a variety of cellular activities
A3K93_RS13200	SM00388	His Kinase A (phosphoacceptor) domain
A3K93_RS14365	SM00116	Domain in cystathionine beta-synthase and other proteins.
