locus-tag class description AMQ28_RS00010 PF02322 Cytochrome bd terminal oxidase subunit II AMQ28_RS00015 PF01654 Cytochrome bd terminal oxidase subunit I AMQ28_RS00040 PF01230 HIT domain AMQ28_RS00055 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_RS00055 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_RS00065 PF01053 Cys/Met metabolism PLP-dependent enzyme AMQ28_RS00070 PF02575 YbaB/EbfC DNA-binding family AMQ28_RS00075 PF02132 RecR protein AMQ28_RS00075 PF13662 Toprim domain AMQ28_RS00080 PF00570 HRDC domain AMQ28_RS00080 PF01612 3'-5' exonuclease AMQ28_RS00085 PF05166 YcgL domain AMQ28_RS00095 PF01434 Peptidase family M41 AMQ28_RS00095 PF17862 AAA+ lid domain AMQ28_RS00095 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_RS00105 PF00571 CBS domain AMQ28_RS00105 PF00478 IMP dehydrogenase / GMP reductase domain AMQ28_RS00135 PF00675 Insulinase (Peptidase family M16) AMQ28_RS00135 PF05193 Peptidase M16 inactive domain AMQ28_RS00140 PF00448 SRP54-type protein, GTPase domain AMQ28_RS00140 PF02881 SRP54-type protein, helical bundle domain AMQ28_RS00180 PF00665 Integrase core domain AMQ28_RS00180 PF13333 Integrase core domain AMQ28_RS00180 PF13276 HTH-like domain AMQ28_RS00185 PF01527 Transposase AMQ28_RS00190 PF10145 Phage-related minor tail protein AMQ28_RS00190 PF01464 Transglycosylase SLT domain AMQ28_RS00190 PF01551 Peptidase family M23 AMQ28_RS00195 PF01965 DJ-1/PfpI family AMQ28_RS00205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS00205 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS00205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS00210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS00210 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS00210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS00215 PF03109 ABC1 family AMQ28_RS00230 PF05175 Methyltransferase small domain AMQ28_RS00235 PF01264 Chorismate synthase AMQ28_RS00245 PF02542 YgbB family AMQ28_RS00255 PF00793 DAHP synthetase I family AMQ28_RS00260 PF01925 Sulfite exporter TauE/SafE AMQ28_RS00275 PF07660 Secretin and TonB N terminus short domain AMQ28_RS00275 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS00275 PF00593 TonB dependent receptor AMQ28_RS00280 PF02684 Lipid-A-disaccharide synthetase AMQ28_RS00285 PF12852 Cupin AMQ28_RS00285 PF12833 Helix-turn-helix domain AMQ28_RS00290 PF00487 Fatty acid desaturase AMQ28_RS00295 PF00375 Sodium:dicarboxylate symporter family AMQ28_RS00300 PF04073 Aminoacyl-tRNA editing domain AMQ28_RS00310 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMQ28_RS00315 PF02277 Phosphoribosyltransferase AMQ28_RS00325 PF02654 Cobalamin-5-phosphate synthase AMQ28_RS00345 PF02635 DsrE/DsrF-like family AMQ28_RS00350 PF13333 Integrase core domain AMQ28_RS00350 PF13276 HTH-like domain AMQ28_RS00350 PF00665 Integrase core domain AMQ28_RS00365 PF16363 GDP-mannose 4,6 dehydratase AMQ28_RS00370 PF00206 Lyase AMQ28_RS00370 PF10415 Fumarase C C-terminus AMQ28_RS00390 PF01654 Cytochrome bd terminal oxidase subunit I AMQ28_RS00395 PF02322 Cytochrome bd terminal oxidase subunit II AMQ28_RS00400 PF00565 Staphylococcal nuclease homologue AMQ28_RS00405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS00405 PF03466 LysR substrate binding domain AMQ28_RS00410 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS00410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS00410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS00425 PF00106 short chain dehydrogenase AMQ28_RS00440 PF13091 PLD-like domain AMQ28_RS00445 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_RS00445 PF00107 Zinc-binding dehydrogenase AMQ28_RS00450 PF00155 Aminotransferase class I and II AMQ28_RS00455 PF00324 Amino acid permease AMQ28_RS00460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMQ28_RS00465 PF00793 DAHP synthetase I family AMQ28_RS00470 PF07690 Major Facilitator Superfamily AMQ28_RS00475 PF01597 Glycine cleavage H-protein AMQ28_RS00480 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMQ28_RS00480 PF12833 Helix-turn-helix domain AMQ28_RS00490 PF00664 ABC transporter transmembrane region AMQ28_RS00490 PF00005 ABC transporter AMQ28_RS00500 PF13737 Transposase DDE domain AMQ28_RS00520 PF00665 Integrase core domain AMQ28_RS00520 PF13936 Helix-turn-helix domain AMQ28_RS00525 PF00924 Mechanosensitive ion channel AMQ28_RS00530 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AMQ28_RS00540 PF00665 Integrase core domain AMQ28_RS00540 PF13276 HTH-like domain AMQ28_RS00540 PF13333 Integrase core domain AMQ28_RS00545 PF00375 Sodium:dicarboxylate symporter family AMQ28_RS00550 PF00916 Sulfate permease family AMQ28_RS00550 PF01740 STAS domain AMQ28_RS00555 PF01553 Acyltransferase AMQ28_RS00560 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_RS00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS00565 PF03466 LysR substrate binding domain AMQ28_RS00570 PF08360 QacR-like protein, C-terminal region AMQ28_RS00570 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS00575 PF12146 Serine aminopeptidase, S33 AMQ28_RS00580 PF00108 Thiolase, N-terminal domain AMQ28_RS00580 PF02803 Thiolase, C-terminal domain AMQ28_RS00585 PF01144 Coenzyme A transferase AMQ28_RS00590 PF01144 Coenzyme A transferase AMQ28_RS00595 PF03594 Benzoate membrane transport protein AMQ28_RS00600 PF00106 short chain dehydrogenase AMQ28_RS00605 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS00605 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_RS00605 PF00970 Oxidoreductase FAD-binding domain AMQ28_RS00610 PF00866 Ring hydroxylating beta subunit AMQ28_RS00615 PF00355 Rieske [2Fe-2S] domain AMQ28_RS00615 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMQ28_RS00620 PF00775 Dioxygenase AMQ28_RS00620 PF04444 Catechol dioxygenase N terminus AMQ28_RS00625 PF02426 Muconolactone delta-isomerase AMQ28_RS00630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMQ28_RS00630 PF13378 Enolase C-terminal domain-like AMQ28_RS00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS00635 PF03466 LysR substrate binding domain AMQ28_RS00640 PF07690 Major Facilitator Superfamily AMQ28_RS00650 PF00667 FAD binding domain AMQ28_RS00650 PF00258 Flavodoxin AMQ28_RS00650 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS00655 PF12802 MarR family AMQ28_RS00660 PF07690 Major Facilitator Superfamily AMQ28_RS00665 PF02667 Short chain fatty acid transporter AMQ28_RS00670 PF01144 Coenzyme A transferase AMQ28_RS00675 PF01144 Coenzyme A transferase AMQ28_RS00680 PF00682 HMGL-like AMQ28_RS00685 PF18140 Propionyl-coenzyme A carboxylase BT domain AMQ28_RS00685 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMQ28_RS00685 PF00364 Biotin-requiring enzyme AMQ28_RS00685 PF00289 Biotin carboxylase, N-terminal domain AMQ28_RS00685 PF02785 Biotin carboxylase C-terminal domain AMQ28_RS00690 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_RS00695 PF01039 Carboxyl transferase domain AMQ28_RS00700 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS00700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS00700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS00705 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS00705 PF17925 Tetracyclin repressor-like, C-terminal domain AMQ28_RS00710 PF00501 AMP-binding enzyme AMQ28_RS00710 PF13193 AMP-binding enzyme C-terminal domain AMQ28_RS00720 PF00171 Aldehyde dehydrogenase family AMQ28_RS00725 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_RS00725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_RS00730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS00730 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS00730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS00735 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_RS00745 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS00750 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMQ28_RS00750 PF18381 YcaO cyclodehydratase C-terminal domain AMQ28_RS00755 PF09339 IclR helix-turn-helix domain AMQ28_RS00755 PF01614 Bacterial transcriptional regulator AMQ28_RS00760 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AMQ28_RS00765 PF00698 Acyl transferase domain AMQ28_RS00780 PF03466 LysR substrate binding domain AMQ28_RS00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS00785 PF00857 Isochorismatase family AMQ28_RS00800 PF12706 Beta-lactamase superfamily domain AMQ28_RS00805 PF01965 DJ-1/PfpI family AMQ28_RS00810 PF00665 Integrase core domain AMQ28_RS00810 PF13333 Integrase core domain AMQ28_RS00810 PF13276 HTH-like domain AMQ28_RS00840 PF01032 FecCD transport family AMQ28_RS00845 PF00593 TonB dependent receptor AMQ28_RS00845 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS00850 PF00155 Aminotransferase class I and II AMQ28_RS00850 PF00392 Bacterial regulatory proteins, gntR family AMQ28_RS00860 PF00884 Sulfatase AMQ28_RS00865 PF03781 Sulfatase-modifying factor enzyme 1 AMQ28_RS00875 PF01717 Cobalamin-independent synthase, Catalytic domain AMQ28_RS00875 PF08267 Cobalamin-independent synthase, N-terminal domain AMQ28_RS00880 PF01613 Flavin reductase like domain AMQ28_RS00885 PF01614 Bacterial transcriptional regulator AMQ28_RS00885 PF09339 IclR helix-turn-helix domain AMQ28_RS00890 PF01494 FAD binding domain AMQ28_RS00895 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS00895 PF00672 HAMP domain AMQ28_RS00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS00900 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS00900 PF00072 Response regulator receiver domain AMQ28_RS00905 PF03928 Haem-degrading AMQ28_RS00910 PF00576 HIUase/Transthyretin family AMQ28_RS00920 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_RS00920 PF00107 Zinc-binding dehydrogenase AMQ28_RS00925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMQ28_RS00935 PF00872 Transposase, Mutator family AMQ28_RS00940 PF07690 Major Facilitator Superfamily AMQ28_RS00955 PF03601 Conserved hypothetical protein 698 AMQ28_RS00970 PF01494 FAD binding domain AMQ28_RS00975 PF00775 Dioxygenase AMQ28_RS00975 PF04444 Catechol dioxygenase N terminus AMQ28_RS00980 PF07690 Major Facilitator Superfamily AMQ28_RS00990 PF00694 Aconitase C-terminal domain AMQ28_RS00990 PF00330 Aconitase family (aconitate hydratase) AMQ28_RS00995 PF13657 HipA N-terminal domain AMQ28_RS00995 PF07804 HipA-like C-terminal domain AMQ28_RS01005 PF09905 DNA-binding protein VF530 AMQ28_RS01025 PF12697 Alpha/beta hydrolase family AMQ28_RS01030 PF00753 Metallo-beta-lactamase superfamily AMQ28_RS01050 PF00717 Peptidase S24-like AMQ28_RS01060 PF13438 Domain of unknown function (DUF4113) AMQ28_RS01060 PF11799 impB/mucB/samB family C-terminal domain AMQ28_RS01060 PF00817 impB/mucB/samB family AMQ28_RS01065 PF01220 Dehydroquinase class II AMQ28_RS01070 PF00364 Biotin-requiring enzyme AMQ28_RS01075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMQ28_RS01075 PF00289 Biotin carboxylase, N-terminal domain AMQ28_RS01075 PF02785 Biotin carboxylase C-terminal domain AMQ28_RS01085 PF01425 Amidase AMQ28_RS01110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_RS01110 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS01125 PF03466 LysR substrate binding domain AMQ28_RS01125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS01130 PF00557 Metallopeptidase family M24 AMQ28_RS01135 PF13737 Transposase DDE domain AMQ28_RS01140 PF05525 Branched-chain amino acid transport protein AMQ28_RS01185 PF03616 Sodium/glutamate symporter AMQ28_RS01200 PF00330 Aconitase family (aconitate hydratase) AMQ28_RS01200 PF11791 Aconitate B N-terminal domain AMQ28_RS01200 PF06434 Aconitate hydratase 2 N-terminus AMQ28_RS01225 PF00313 'Cold-shock' DNA-binding domain AMQ28_RS01255 PF01103 Surface antigen AMQ28_RS01255 PF07244 Surface antigen variable number repeat AMQ28_RS01255 PF17243 POTRA domain TamA domain 1 AMQ28_RS01260 PF07690 Major Facilitator Superfamily AMQ28_RS01265 PF03232 Ubiquinone biosynthesis protein COQ7 AMQ28_RS01280 PF02152 Dihydroneopterin aldolase AMQ28_RS01285 PF03109 ABC1 family AMQ28_RS01290 PF00899 ThiF family AMQ28_RS01295 PF13193 AMP-binding enzyme C-terminal domain AMQ28_RS01295 PF00501 AMP-binding enzyme AMQ28_RS01300 PF00106 short chain dehydrogenase AMQ28_RS01305 PF12833 Helix-turn-helix domain AMQ28_RS01305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMQ28_RS01320 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS01325 PF13847 Methyltransferase domain AMQ28_RS01325 PF17827 PrmC N-terminal domain AMQ28_RS01330 PF03462 PCRF domain AMQ28_RS01330 PF00472 RF-1 domain AMQ28_RS01345 PF00296 Luciferase-like monooxygenase AMQ28_RS01350 PF05360 yiaA/B two helix domain AMQ28_RS01365 PF03618 Kinase/pyrophosphorylase AMQ28_RS01370 PF02896 PEP-utilising enzyme, TIM barrel domain AMQ28_RS01370 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMQ28_RS01370 PF00391 PEP-utilising enzyme, mobile domain AMQ28_RS01380 PF06481 COX Aromatic Rich Motif AMQ28_RS01380 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMQ28_RS01385 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMQ28_RS01390 PF00510 Cytochrome c oxidase subunit III AMQ28_RS01395 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMQ28_RS01400 PF01040 UbiA prenyltransferase family AMQ28_RS01405 PF01250 Ribosomal protein S6 AMQ28_RS01410 PF01084 Ribosomal protein S18 AMQ28_RS01415 PF03948 Ribosomal protein L9, C-terminal domain AMQ28_RS01415 PF01281 Ribosomal protein L9, N-terminal domain AMQ28_RS01420 PF00772 DnaB-like helicase N terminal domain AMQ28_RS01420 PF03796 DnaB-like helicase C terminal domain AMQ28_RS01425 PF01168 Alanine racemase, N-terminal domain AMQ28_RS01425 PF00842 Alanine racemase, C-terminal domain AMQ28_RS01435 PF01841 Transglutaminase-like superfamily AMQ28_RS01435 PF08379 Bacterial transglutaminase-like N-terminal region AMQ28_RS01445 PF14403 Circularly permuted ATP-grasp type 2 AMQ28_RS01455 PF01645 Conserved region in glutamate synthase AMQ28_RS01470 PF01565 FAD binding domain AMQ28_RS01470 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMQ28_RS01475 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMQ28_RS01480 PF00465 Iron-containing alcohol dehydrogenase AMQ28_RS01485 PF12169 DNA polymerase III subunits gamma and tau domain III AMQ28_RS01485 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMQ28_RS01485 PF12170 DNA polymerase III tau subunit V interacting with alpha AMQ28_RS01495 PF00144 Beta-lactamase AMQ28_RS01510 PF02803 Thiolase, C-terminal domain AMQ28_RS01510 PF00108 Thiolase, N-terminal domain AMQ28_RS01525 PF03466 LysR substrate binding domain AMQ28_RS01525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS01530 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMQ28_RS01535 PF01810 LysE type translocator AMQ28_RS01540 PF03594 Benzoate membrane transport protein AMQ28_RS01545 PF00893 Small Multidrug Resistance protein AMQ28_RS01550 PF00582 Universal stress protein family AMQ28_RS01555 PF00582 Universal stress protein family AMQ28_RS01570 PF01433 Peptidase family M1 domain AMQ28_RS01570 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMQ28_RS01570 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMQ28_RS01590 PF02110 Hydroxyethylthiazole kinase family AMQ28_RS01595 PF03471 Transporter associated domain AMQ28_RS01595 PF03741 Integral membrane protein TerC family AMQ28_RS01610 PF00171 Aldehyde dehydrogenase family AMQ28_RS01615 PF01274 Malate synthase AMQ28_RS01620 PF03969 AFG1-like ATPase AMQ28_RS01625 PF03956 Lysine exporter LysO AMQ28_RS01630 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMQ28_RS01640 PF00216 Bacterial DNA-binding protein AMQ28_RS01645 PF00575 S1 RNA binding domain AMQ28_RS01650 PF02224 Cytidylate kinase AMQ28_RS01660 PF14437 MafB19-like deaminase AMQ28_RS01670 PF03167 Uracil DNA glycosylase superfamily AMQ28_RS01680 PF03934 Type II secretion system (T2SS), protein K AMQ28_RS01685 PF07963 Prokaryotic N-terminal methylation motif AMQ28_RS01685 PF11612 Type II secretion system (T2SS), protein J AMQ28_RS01690 PF07963 Prokaryotic N-terminal methylation motif AMQ28_RS01690 PF02501 Type II secretion system (T2SS), protein I AMQ28_RS01695 PF07963 Prokaryotic N-terminal methylation motif AMQ28_RS01695 PF12019 Type II transport protein GspH AMQ28_RS01700 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS01705 PF01026 TatD related DNase AMQ28_RS01715 PF09115 DNA polymerase III, delta subunit, C terminal AMQ28_RS01720 PF02348 Cytidylyltransferase AMQ28_RS01725 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMQ28_RS01730 PF00005 ABC transporter AMQ28_RS01730 PF00664 ABC transporter transmembrane region AMQ28_RS01740 PF01618 MotA/TolQ/ExbB proton channel family AMQ28_RS01745 PF02195 ParB-like nuclease domain AMQ28_RS01745 PF17762 HTH domain found in ParB protein AMQ28_RS01750 PF13614 AAA domain AMQ28_RS01755 PF02527 rRNA small subunit methyltransferase G AMQ28_RS01760 PF00483 Nucleotidyl transferase AMQ28_RS01765 PF01636 Phosphotransferase enzyme family AMQ28_RS01770 PF03968 OstA-like protein AMQ28_RS01770 PF04453 LPS transport system D AMQ28_RS01775 PF09312 SurA N-terminal domain AMQ28_RS01775 PF00639 PPIC-type PPIASE domain AMQ28_RS01780 PF17209 Hfq protein AMQ28_RS01790 PF01119 DNA mismatch repair protein, C-terminal domain AMQ28_RS01790 PF08676 MutL C terminal dimerisation domain AMQ28_RS01795 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMQ28_RS01800 PF00849 RNA pseudouridylate synthase AMQ28_RS01800 PF01479 S4 domain AMQ28_RS01815 PF01479 S4 domain AMQ28_RS01815 PF00849 RNA pseudouridylate synthase AMQ28_RS01820 PF04284 Protein of unknown function (DUF441) AMQ28_RS01825 PF00563 EAL domain AMQ28_RS01825 PF03707 Bacterial signalling protein N terminal repeat AMQ28_RS01825 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS01830 PF03466 LysR substrate binding domain AMQ28_RS01835 PF14493 Helix-turn-helix domain AMQ28_RS01835 PF05970 PIF1-like helicase AMQ28_RS01845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMQ28_RS01845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMQ28_RS01850 PF11898 Domain of unknown function (DUF3418) AMQ28_RS01850 PF04408 Helicase associated domain (HA2) AMQ28_RS01850 PF00270 DEAD/DEAH box helicase AMQ28_RS01850 PF00271 Helicase conserved C-terminal domain AMQ28_RS01850 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMQ28_RS01855 PF00578 AhpC/TSA family AMQ28_RS01855 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMQ28_RS01865 PF01596 O-methyltransferase AMQ28_RS01875 PF13192 Thioredoxin domain AMQ28_RS01875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS01890 PF04143 Sulphur transport AMQ28_RS01910 PF03060 Nitronate monooxygenase AMQ28_RS01915 PF01207 Dihydrouridine synthase (Dus) AMQ28_RS01940 PF03358 NADPH-dependent FMN reductase AMQ28_RS01945 PF01758 Sodium Bile acid symporter family AMQ28_RS01960 PF01022 Bacterial regulatory protein, arsR family AMQ28_RS01965 PF03960 ArsC family AMQ28_RS01995 PF13276 HTH-like domain AMQ28_RS01995 PF00665 Integrase core domain AMQ28_RS01995 PF13333 Integrase core domain AMQ28_RS02005 PF07759 Protein of unknown function (DUF1615) AMQ28_RS02015 PF00487 Fatty acid desaturase AMQ28_RS02020 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS02020 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_RS02020 PF00970 Oxidoreductase FAD-binding domain AMQ28_RS02025 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS02030 PF00176 SNF2 family N-terminal domain AMQ28_RS02030 PF00271 Helicase conserved C-terminal domain AMQ28_RS02030 PF18339 RapA N-terminal Tudor like domain 1 AMQ28_RS02030 PF18337 RapA N-terminal Tudor like domain AMQ28_RS02030 PF12137 RNA polymerase recycling family C-terminal AMQ28_RS02035 PF00849 RNA pseudouridylate synthase AMQ28_RS02050 PF01527 Transposase AMQ28_RS02055 PF13333 Integrase core domain AMQ28_RS02055 PF00665 Integrase core domain AMQ28_RS02055 PF13276 HTH-like domain AMQ28_RS02065 PF03928 Haem-degrading AMQ28_RS02070 PF00202 Aminotransferase class-III AMQ28_RS02075 PF02581 Thiamine monophosphate synthase AMQ28_RS02085 PF01928 CYTH domain AMQ28_RS02105 PF05193 Peptidase M16 inactive domain AMQ28_RS02105 PF00675 Insulinase (Peptidase family M16) AMQ28_RS02110 PF02567 Phenazine biosynthesis-like protein AMQ28_RS02115 PF00753 Metallo-beta-lactamase superfamily AMQ28_RS02115 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMQ28_RS02140 PF03793 PASTA domain AMQ28_RS02140 PF00069 Protein kinase domain AMQ28_RS02160 PF00814 Glycoprotease family AMQ28_RS02165 PF01165 Ribosomal protein S21 AMQ28_RS02185 PF13181 Tetratricopeptide repeat AMQ28_RS02185 PF01435 Peptidase family M48 AMQ28_RS02190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_RS02190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_RS02205 PF00156 Phosphoribosyl transferase domain AMQ28_RS02210 PF02674 Colicin V production protein AMQ28_RS02215 PF01180 Dihydroorotate dehydrogenase AMQ28_RS02235 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMQ28_RS02235 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMQ28_RS02240 PF00881 Nitroreductase family AMQ28_RS02250 PF00271 Helicase conserved C-terminal domain AMQ28_RS02250 PF00270 DEAD/DEAH box helicase AMQ28_RS02255 PF00313 'Cold-shock' DNA-binding domain AMQ28_RS02260 PF04542 Sigma-70 region 2 AMQ28_RS02260 PF00140 Sigma-70 factor, region 1.2 AMQ28_RS02260 PF04545 Sigma-70, region 4 AMQ28_RS02265 PF04241 Protein of unknown function (DUF423) AMQ28_RS02275 PF05690 Thiazole biosynthesis protein ThiG AMQ28_RS02280 PF03992 Antibiotic biosynthesis monooxygenase AMQ28_RS02285 PF02525 Flavodoxin-like fold AMQ28_RS02290 PF00043 Glutathione S-transferase, C-terminal domain AMQ28_RS02290 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_RS02295 PF00916 Sulfate permease family AMQ28_RS02295 PF01740 STAS domain AMQ28_RS02300 PF02390 Putative methyltransferase AMQ28_RS02315 PF00691 OmpA family AMQ28_RS02315 PF05736 OprF membrane domain AMQ28_RS02320 PF01979 Amidohydrolase family AMQ28_RS02325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMQ28_RS02325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMQ28_RS02335 PF10672 S-adenosylmethionine-dependent methyltransferase AMQ28_RS02335 PF02926 THUMP domain AMQ28_RS02335 PF01170 Putative RNA methylase family UPF0020 AMQ28_RS02350 PF07724 AAA domain (Cdc48 subfamily) AMQ28_RS02350 PF17871 AAA lid domain AMQ28_RS02350 PF02861 Clp amino terminal domain, pathogenicity island component AMQ28_RS02350 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_RS02350 PF10431 C-terminal, D2-small domain, of ClpB protein AMQ28_RS02355 PF02566 OsmC-like protein AMQ28_RS02360 PF00027 Cyclic nucleotide-binding domain AMQ28_RS02360 PF13545 Crp-like helix-turn-helix domain AMQ28_RS02365 PF00248 Aldo/keto reductase family AMQ28_RS02380 PF00709 Adenylosuccinate synthetase AMQ28_RS02385 PF13393 Histidyl-tRNA synthetase AMQ28_RS02395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_RS02395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMQ28_RS02400 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_RS02400 PF02272 DHHA1 domain AMQ28_RS02400 PF01411 tRNA synthetases class II (A) AMQ28_RS02405 PF13840 ACT domain AMQ28_RS02405 PF01842 ACT domain AMQ28_RS02405 PF00696 Amino acid kinase family AMQ28_RS02410 PF02599 Global regulator protein family AMQ28_RS02415 PF01351 Ribonuclease HII AMQ28_RS02425 PF01292 Prokaryotic cytochrome b561 AMQ28_RS02435 PF00962 Adenosine/AMP deaminase AMQ28_RS02440 PF00860 Permease family AMQ28_RS02445 PF00875 DNA photolyase AMQ28_RS02445 PF03441 FAD binding domain of DNA photolyase AMQ28_RS02455 PF03883 Peroxide stress protein YaaA AMQ28_RS02470 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMQ28_RS02475 PF01817 Chorismate mutase type II AMQ28_RS02475 PF00800 Prephenate dehydratase AMQ28_RS02475 PF01842 ACT domain AMQ28_RS02480 PF01965 DJ-1/PfpI family AMQ28_RS02485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS02485 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS02485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS02490 PF00375 Sodium:dicarboxylate symporter family AMQ28_RS02495 PF00117 Glutamine amidotransferase class-I AMQ28_RS02495 PF00591 Glycosyl transferase family, a/b domain AMQ28_RS02495 PF02885 Glycosyl transferase family, helical bundle domain AMQ28_RS02500 PF07023 Protein of unknown function (DUF1315) AMQ28_RS02505 PF01513 ATP-NAD kinase AMQ28_RS02510 PF14814 Bifunctional transglycosylase second domain AMQ28_RS02510 PF00912 Transglycosylase AMQ28_RS02510 PF00905 Penicillin binding protein transpeptidase domain AMQ28_RS02520 PF00293 NUDIX domain AMQ28_RS02530 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS02530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS02530 PF08521 Two-component sensor kinase N-terminal AMQ28_RS02535 PF00072 Response regulator receiver domain AMQ28_RS02535 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS02545 PF00437 Type II/IV secretion system protein AMQ28_RS02545 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMQ28_RS02550 PF01980 tRNA-methyltransferase O AMQ28_RS02550 PF18389 TrmO C-terminal domain AMQ28_RS02555 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS02555 PF00970 Oxidoreductase FAD-binding domain AMQ28_RS02575 PF13411 MerR HTH family regulatory protein AMQ28_RS02580 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS02580 PF13192 Thioredoxin domain AMQ28_RS02590 PF05816 Toxic anion resistance protein (TelA) AMQ28_RS02600 PF00375 Sodium:dicarboxylate symporter family AMQ28_RS02605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS02605 PF03466 LysR substrate binding domain AMQ28_RS02610 PF00206 Lyase AMQ28_RS02610 PF10415 Fumarase C C-terminus AMQ28_RS02620 PF11992 Domain of unknown function (DUF3488) AMQ28_RS02620 PF01841 Transglutaminase-like superfamily AMQ28_RS02620 PF13559 Domain of unknown function (DUF4129) AMQ28_RS02630 PF17863 AAA lid domain AMQ28_RS02630 PF07726 ATPase family associated with various cellular activities (AAA) AMQ28_RS02635 PF04328 Selenoprotein, putative AMQ28_RS02640 PF13722 5TM C-terminal transporter carbon starvation CstA AMQ28_RS02640 PF02554 Carbon starvation protein CstA AMQ28_RS02645 PF09285 Elongation factor P, C-terminal AMQ28_RS02645 PF08207 Elongation factor P (EF-P) KOW-like domain AMQ28_RS02645 PF01132 Elongation factor P (EF-P) OB domain AMQ28_RS02650 PF04055 Radical SAM superfamily AMQ28_RS02665 PF01197 Ribosomal protein L31 AMQ28_RS02670 PF13593 SBF-like CPA transporter family (DUF4137) AMQ28_RS02675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMQ28_RS02680 PF07690 Major Facilitator Superfamily AMQ28_RS02685 PF05362 Lon protease (S16) C-terminal proteolytic domain AMQ28_RS02685 PF13654 AAA domain AMQ28_RS02690 PF00462 Glutaredoxin AMQ28_RS02695 PF00202 Aminotransferase class-III AMQ28_RS02700 PF03466 LysR substrate binding domain AMQ28_RS02700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS02705 PF01476 LysM domain AMQ28_RS02705 PF01551 Peptidase family M23 AMQ28_RS02710 PF01975 Survival protein SurE AMQ28_RS02725 PF00768 D-alanyl-D-alanine carboxypeptidase AMQ28_RS02725 PF07943 Penicillin-binding protein 5, C-terminal domain AMQ28_RS02730 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS02735 PF00293 NUDIX domain AMQ28_RS02745 PF04356 Protein of unknown function (DUF489) AMQ28_RS02750 PF08328 Adenylosuccinate lyase C-terminal AMQ28_RS02750 PF00206 Lyase AMQ28_RS02765 PF08496 Peptidase family S49 N-terminal AMQ28_RS02765 PF01343 Peptidase family S49 AMQ28_RS02770 PF00005 ABC transporter AMQ28_RS02775 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS02780 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS02785 PF12849 PBP superfamily domain AMQ28_RS02790 PF07690 Major Facilitator Superfamily AMQ28_RS02795 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMQ28_RS02800 PF00202 Aminotransferase class-III AMQ28_RS02810 PF01569 PAP2 superfamily AMQ28_RS02815 PF00696 Amino acid kinase family AMQ28_RS02815 PF01472 PUA domain AMQ28_RS02820 PF01926 50S ribosome-binding GTPase AMQ28_RS02820 PF01018 GTP1/OBG AMQ28_RS02825 PF01638 HxlR-like helix-turn-helix AMQ28_RS02830 PF05368 NmrA-like family AMQ28_RS02845 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_RS02845 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMQ28_RS02850 PF00892 EamA-like transporter family AMQ28_RS02860 PF04851 Type III restriction enzyme, res subunit AMQ28_RS02860 PF17757 UvrB interaction domain AMQ28_RS02860 PF00271 Helicase conserved C-terminal domain AMQ28_RS02860 PF02151 UvrB/uvrC motif AMQ28_RS02860 PF12344 Ultra-violet resistance protein B AMQ28_RS02890 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMQ28_RS02895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMQ28_RS02895 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS02900 PF04055 Radical SAM superfamily AMQ28_RS02905 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AMQ28_RS02910 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMQ28_RS02915 PF02565 Recombination protein O C terminal AMQ28_RS02915 PF11967 Recombination protein O N terminal AMQ28_RS02925 PF01926 50S ribosome-binding GTPase AMQ28_RS02925 PF07650 KH domain AMQ28_RS02930 PF00035 Double-stranded RNA binding motif AMQ28_RS02930 PF14622 Ribonuclease-III-like AMQ28_RS02940 PF10502 Signal peptidase, peptidase S26 AMQ28_RS02945 PF00679 Elongation factor G C-terminus AMQ28_RS02945 PF06421 GTP-binding protein LepA C-terminus AMQ28_RS02945 PF03144 Elongation factor Tu domain 2 AMQ28_RS02945 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS02955 PF13180 PDZ domain AMQ28_RS02960 PF02910 Fumarate reductase flavoprotein C-term AMQ28_RS02960 PF00890 FAD binding domain AMQ28_RS02970 PF02223 Thymidylate kinase AMQ28_RS02975 PF02618 YceG-like family AMQ28_RS02995 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS03000 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS03005 PF12857 TOBE-like domain AMQ28_RS03005 PF00005 ABC transporter AMQ28_RS03010 PF03466 LysR substrate binding domain AMQ28_RS03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS03020 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS03020 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMQ28_RS03020 PF14602 Hexapeptide repeat of succinyl-transferase AMQ28_RS03025 PF04055 Radical SAM superfamily AMQ28_RS03030 PF06508 Queuosine biosynthesis protein QueC AMQ28_RS03045 PF00578 AhpC/TSA family AMQ28_RS03050 PF04264 YceI-like domain AMQ28_RS03055 PF00293 NUDIX domain AMQ28_RS03055 PF01467 Cytidylyltransferase-like AMQ28_RS03060 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_RS03065 PF00881 Nitroreductase family AMQ28_RS03070 PF01784 NIF3 (NGG1p interacting factor 3) AMQ28_RS03075 PF09317 Domain of unknown function (DUF1974) AMQ28_RS03075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS03075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS03075 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS03080 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMQ28_RS03080 PF02769 AIR synthase related protein, C-terminal domain AMQ28_RS03080 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMQ28_RS03090 PF01966 HD domain AMQ28_RS03095 PF01330 RuvA N terminal domain AMQ28_RS03095 PF07499 RuvA, C-terminal domain AMQ28_RS03100 PF05491 RuvB C-terminal winged helix domain AMQ28_RS03100 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMQ28_RS03100 PF17864 RuvB AAA lid domain AMQ28_RS03115 PF03061 Thioesterase superfamily AMQ28_RS03120 PF01618 MotA/TolQ/ExbB proton channel family AMQ28_RS03125 PF02472 Biopolymer transport protein ExbD/TolR AMQ28_RS03135 PF04052 TolB amino-terminal domain AMQ28_RS03135 PF07676 WD40-like Beta Propeller Repeat AMQ28_RS03140 PF00691 OmpA family AMQ28_RS03150 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMQ28_RS03155 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMQ28_RS03155 PF00588 SpoU rRNA Methylase family AMQ28_RS03185 PF11638 DnaA N-terminal domain AMQ28_RS03185 PF00308 Bacterial dnaA protein AMQ28_RS03185 PF08299 Bacterial dnaA protein helix-turn-helix AMQ28_RS03190 PF01594 AI-2E family transporter AMQ28_RS03195 PF00586 AIR synthase related protein, N-terminal domain AMQ28_RS03195 PF02769 AIR synthase related protein, C-terminal domain AMQ28_RS03200 PF00551 Formyl transferase AMQ28_RS03210 PF06965 Na+/H+ antiporter 1 AMQ28_RS03210 PF01343 Peptidase family S49 AMQ28_RS03220 PF03772 Competence protein AMQ28_RS03220 PF00753 Metallo-beta-lactamase superfamily AMQ28_RS03220 PF13567 Domain of unknown function (DUF4131) AMQ28_RS03225 PF00005 ABC transporter AMQ28_RS03230 PF12704 MacB-like periplasmic core domain AMQ28_RS03230 PF02687 FtsX-like permease family AMQ28_RS03240 PF00892 EamA-like transporter family AMQ28_RS03245 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMQ28_RS03255 PF00266 Aminotransferase class-V AMQ28_RS03265 PF13533 Biotin-lipoyl like AMQ28_RS03280 PF00375 Sodium:dicarboxylate symporter family AMQ28_RS03285 PF03989 DNA gyrase C-terminal domain, beta-propeller AMQ28_RS03285 PF00521 DNA gyrase/topoisomerase IV, subunit A AMQ28_RS03290 PF01012 Electron transfer flavoprotein domain AMQ28_RS03290 PF00766 Electron transfer flavoprotein FAD-binding domain AMQ28_RS03295 PF01012 Electron transfer flavoprotein domain AMQ28_RS03300 PF01810 LysE type translocator AMQ28_RS03305 PF13359 DDE superfamily endonuclease AMQ28_RS03305 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS03315 PF01037 Lrp/AsnC ligand binding domain AMQ28_RS03325 PF00589 Phage integrase family AMQ28_RS03325 PF02899 Phage integrase, N-terminal SAM-like domain AMQ28_RS03335 PF01678 Diaminopimelate epimerase AMQ28_RS03340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMQ28_RS03340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMQ28_RS03350 PF00324 Amino acid permease AMQ28_RS03355 PF18073 Rubredoxin metal binding domain AMQ28_RS03400 PF05221 S-adenosyl-L-homocysteine hydrolase AMQ28_RS03400 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMQ28_RS03405 PF02219 Methylenetetrahydrofolate reductase AMQ28_RS03410 PF04452 RNA methyltransferase AMQ28_RS03415 PF00563 EAL domain AMQ28_RS03415 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS03415 PF00498 FHA domain AMQ28_RS03420 PF01515 Phosphate acetyl/butaryl transferase AMQ28_RS03420 PF03949 Malic enzyme, NAD binding domain AMQ28_RS03420 PF00390 Malic enzyme, N-terminal domain AMQ28_RS03425 PF01743 Poly A polymerase head domain AMQ28_RS03425 PF12627 Probable RNA and SrmB- binding site of polymerase A AMQ28_RS03430 PF00152 tRNA synthetases class II (D, K and N) AMQ28_RS03435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_RS03435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_RS03435 PF11890 Domain of unknown function (DUF3410) AMQ28_RS03440 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS03440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS03440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS03445 PF03466 LysR substrate binding domain AMQ28_RS03445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS03450 PF00106 short chain dehydrogenase AMQ28_RS03465 PF00005 ABC transporter AMQ28_RS03465 PF03459 TOBE domain AMQ28_RS03470 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS03480 PF00994 Probable molybdopterin binding domain AMQ28_RS03480 PF03454 MoeA C-terminal region (domain IV) AMQ28_RS03480 PF03453 MoeA N-terminal region (domain I and II) AMQ28_RS03485 PF00994 Probable molybdopterin binding domain AMQ28_RS03485 PF01967 MoaC family AMQ28_RS03495 PF02391 MoaE protein AMQ28_RS03505 PF04055 Radical SAM superfamily AMQ28_RS03505 PF06463 Molybdenum Cofactor Synthesis C AMQ28_RS03510 PF12804 MobA-like NTP transferase domain AMQ28_RS03515 PF02634 FdhD/NarQ family AMQ28_RS03520 PF00384 Molybdopterin oxidoreductase AMQ28_RS03540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS03540 PF03466 LysR substrate binding domain AMQ28_RS03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS03545 PF03466 LysR substrate binding domain AMQ28_RS03550 PF02447 GntP family permease AMQ28_RS03555 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_RS03560 PF01638 HxlR-like helix-turn-helix AMQ28_RS03565 PF13006 Insertion element 4 transposase N-terminal AMQ28_RS03565 PF01609 Transposase DDE domain AMQ28_RS03570 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS03570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_RS03580 PF00561 alpha/beta hydrolase fold AMQ28_RS03585 PF00561 alpha/beta hydrolase fold AMQ28_RS03590 PF00106 short chain dehydrogenase AMQ28_RS03595 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_RS03595 PF08659 KR domain AMQ28_RS03595 PF00698 Acyl transferase domain AMQ28_RS03595 PF14765 Polyketide synthase dehydratase AMQ28_RS03595 PF00550 Phosphopantetheine attachment site AMQ28_RS03605 PF03449 Transcription elongation factor, N-terminal AMQ28_RS03605 PF01272 Transcription elongation factor, GreA/GreB, C-term AMQ28_RS03610 PF01464 Transglycosylase SLT domain AMQ28_RS03610 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMQ28_RS03620 PF01171 PP-loop family AMQ28_RS03625 PF10145 Phage-related minor tail protein AMQ28_RS03625 PF01551 Peptidase family M23 AMQ28_RS03625 PF01464 Transglycosylase SLT domain AMQ28_RS03630 PF01435 Peptidase family M48 AMQ28_RS03645 PF00571 CBS domain AMQ28_RS03645 PF01769 Divalent cation transporter AMQ28_RS03645 PF03448 MgtE intracellular N domain AMQ28_RS03650 PF00873 AcrB/AcrD/AcrF family AMQ28_RS03655 PF03009 Glycerophosphoryl diester phosphodiesterase family AMQ28_RS03660 PF00463 Isocitrate lyase family AMQ28_RS03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS03665 PF03466 LysR substrate binding domain AMQ28_RS03670 PF01595 Cyclin M transmembrane N-terminal domain AMQ28_RS03670 PF00571 CBS domain AMQ28_RS03670 PF03471 Transporter associated domain AMQ28_RS03675 PF03600 Citrate transporter AMQ28_RS03690 PF16655 PhoD-like phosphatase, N-terminal domain AMQ28_RS03690 PF09423 PhoD-like phosphatase AMQ28_RS03705 PF00809 Pterin binding enzyme AMQ28_RS03710 PF17862 AAA+ lid domain AMQ28_RS03710 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_RS03710 PF06480 FtsH Extracellular AMQ28_RS03710 PF01434 Peptidase family M41 AMQ28_RS03715 PF01728 FtsJ-like methyltransferase AMQ28_RS03720 PF01985 CRS1 / YhbY (CRM) domain AMQ28_RS03735 PF00117 Glutamine amidotransferase class-I AMQ28_RS03735 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMQ28_RS03740 PF02142 MGS-like domain AMQ28_RS03740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMQ28_RS03740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMQ28_RS03745 PF03449 Transcription elongation factor, N-terminal AMQ28_RS03745 PF01272 Transcription elongation factor, GreA/GreB, C-term AMQ28_RS03755 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS03765 PF00582 Universal stress protein family AMQ28_RS03770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMQ28_RS03775 PF00999 Sodium/hydrogen exchanger family AMQ28_RS03785 PF04228 Putative neutral zinc metallopeptidase AMQ28_RS03790 PF05661 Protein of unknown function (DUF808) AMQ28_RS03795 PF00579 tRNA synthetases class I (W and Y) AMQ28_RS03800 PF14052 Capsule assembly protein Wzi AMQ28_RS03805 PF01336 OB-fold nucleic acid binding domain AMQ28_RS03805 PF00152 tRNA synthetases class II (D, K and N) AMQ28_RS03815 PF00156 Phosphoribosyl transferase domain AMQ28_RS03820 PF00301 Rubredoxin AMQ28_RS03825 PF18113 Rubredoxin binding C-terminal domain AMQ28_RS03825 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS03830 PF00561 alpha/beta hydrolase fold AMQ28_RS03835 PF03466 LysR substrate binding domain AMQ28_RS03835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS03840 PF13089 Polyphosphate kinase N-terminal domain AMQ28_RS03840 PF02503 Polyphosphate kinase middle domain AMQ28_RS03840 PF17941 Polyphosphate kinase C-terminal domain 1 AMQ28_RS03840 PF13090 Polyphosphate kinase C-terminal domain 2 AMQ28_RS03845 PF00912 Transglycosylase AMQ28_RS03850 PF01694 Rhomboid family AMQ28_RS03860 PF00005 ABC transporter AMQ28_RS03865 PF13472 GDSL-like Lipase/Acylhydrolase family AMQ28_RS03870 PF00484 Carbonic anhydrase AMQ28_RS03875 PF00561 alpha/beta hydrolase fold AMQ28_RS03885 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS03885 PF00593 TonB dependent receptor AMQ28_RS03890 PF01106 NifU-like domain AMQ28_RS03890 PF01521 Iron-sulphur cluster biosynthesis AMQ28_RS03905 PF01384 Phosphate transporter family AMQ28_RS03910 PF02310 B12 binding domain AMQ28_RS03910 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMQ28_RS03910 PF02574 Homocysteine S-methyltransferase AMQ28_RS03910 PF02607 B12 binding domain AMQ28_RS03910 PF00809 Pterin binding enzyme AMQ28_RS03915 PF01327 Polypeptide deformylase AMQ28_RS03955 PF00535 Glycosyl transferase family 2 AMQ28_RS03960 PF14883 Hypothetical glycosyl hydrolase family 13 AMQ28_RS03960 PF01522 Polysaccharide deacetylase AMQ28_RS03980 PF13673 Acetyltransferase (GNAT) domain AMQ28_RS03985 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS03990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_RS03995 PF07152 YaeQ protein AMQ28_RS04000 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMQ28_RS04000 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMQ28_RS04010 PF03061 Thioesterase superfamily AMQ28_RS04015 PF01734 Patatin-like phospholipase AMQ28_RS04025 PF03616 Sodium/glutamate symporter AMQ28_RS04035 PF00881 Nitroreductase family AMQ28_RS04040 PF07690 Major Facilitator Superfamily AMQ28_RS04045 PF12805 FUSC-like inner membrane protein yccS AMQ28_RS04055 PF00667 FAD binding domain AMQ28_RS04055 PF00258 Flavodoxin AMQ28_RS04055 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS04110 PF03734 L,D-transpeptidase catalytic domain AMQ28_RS04110 PF17969 L,D-transpeptidase C-terminal domain AMQ28_RS04115 PF04304 Protein of unknown function (DUF454) AMQ28_RS04130 PF01546 Peptidase family M20/M25/M40 AMQ28_RS04130 PF07687 Peptidase dimerisation domain AMQ28_RS04140 PF01584 CheW-like domain AMQ28_RS04140 PF02895 Signal transducing histidine kinase, homodimeric domain AMQ28_RS04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS04140 PF01627 Hpt domain AMQ28_RS04140 PF00072 Response regulator receiver domain AMQ28_RS04150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMQ28_RS04150 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMQ28_RS04155 PF01584 CheW-like domain AMQ28_RS04160 PF00072 Response regulator receiver domain AMQ28_RS04165 PF00072 Response regulator receiver domain AMQ28_RS04180 PF00873 AcrB/AcrD/AcrF family AMQ28_RS04185 PF04073 Aminoacyl-tRNA editing domain AMQ28_RS04185 PF03129 Anticodon binding domain AMQ28_RS04185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMQ28_RS04210 PF00692 dUTPase AMQ28_RS04225 PF10609 NUBPL iron-transfer P-loop NTPase AMQ28_RS04245 PF00589 Phage integrase family AMQ28_RS04245 PF13356 Arm DNA-binding domain AMQ28_RS04325 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS04325 PF13359 DDE superfamily endonuclease AMQ28_RS04330 PF13289 SIR2-like domain AMQ28_RS04335 PF00436 Single-strand binding protein family AMQ28_RS04365 PF00872 Transposase, Mutator family AMQ28_RS04385 PF07690 Major Facilitator Superfamily AMQ28_RS04390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_RS04390 PF00529 HlyD membrane-fusion protein of T1SS AMQ28_RS04395 PF03061 Thioesterase superfamily AMQ28_RS04400 PF00490 Delta-aminolevulinic acid dehydratase AMQ28_RS04405 PF01266 FAD dependent oxidoreductase AMQ28_RS04410 PF01370 NAD dependent epimerase/dehydratase family AMQ28_RS04410 PF08338 Domain of unknown function (DUF1731) AMQ28_RS04445 PF13533 Biotin-lipoyl like AMQ28_RS04450 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_RS04460 PF05552 Conserved TM helix AMQ28_RS04475 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS04475 PF00970 Oxidoreductase FAD-binding domain AMQ28_RS04480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS04480 PF03466 LysR substrate binding domain AMQ28_RS04500 PF00361 Proton-conducting membrane transporter AMQ28_RS04505 PF00361 Proton-conducting membrane transporter AMQ28_RS04510 PF00361 Proton-conducting membrane transporter AMQ28_RS04510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMQ28_RS04515 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMQ28_RS04520 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMQ28_RS04525 PF12838 4Fe-4S dicluster domain AMQ28_RS04530 PF00146 NADH dehydrogenase AMQ28_RS04535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMQ28_RS04535 PF00384 Molybdopterin oxidoreductase AMQ28_RS04535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_RS04540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMQ28_RS04540 PF10531 SLBB domain AMQ28_RS04540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMQ28_RS04550 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMQ28_RS04550 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMQ28_RS04555 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMQ28_RS04560 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMQ28_RS04565 PF13737 Transposase DDE domain AMQ28_RS04575 PF00672 HAMP domain AMQ28_RS04575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS04575 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS04580 PF00072 Response regulator receiver domain AMQ28_RS04580 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS04585 PF00317 Ribonucleotide reductase, all-alpha domain AMQ28_RS04585 PF03477 ATP cone domain AMQ28_RS04585 PF02867 Ribonucleotide reductase, barrel domain AMQ28_RS04590 PF00268 Ribonucleotide reductase, small chain AMQ28_RS04595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_RS04595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_RS04600 PF07690 Major Facilitator Superfamily AMQ28_RS04605 PF01370 NAD dependent epimerase/dehydratase family AMQ28_RS04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS04610 PF03466 LysR substrate binding domain AMQ28_RS04620 PF00920 Dehydratase family AMQ28_RS04625 PF00171 Aldehyde dehydrogenase family AMQ28_RS04635 PF10282 Lactonase, 7-bladed beta-propeller AMQ28_RS04640 PF00171 Aldehyde dehydrogenase family AMQ28_RS04650 PF07690 Major Facilitator Superfamily AMQ28_RS04655 PF00920 Dehydratase family AMQ28_RS04660 PF07729 FCD domain AMQ28_RS04660 PF00392 Bacterial regulatory proteins, gntR family AMQ28_RS04665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_RS04665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_RS04670 PF01476 LysM domain AMQ28_RS04670 PF04972 BON domain AMQ28_RS04675 PF00691 OmpA family AMQ28_RS04675 PF13505 Outer membrane protein beta-barrel domain AMQ28_RS04685 PF00108 Thiolase, N-terminal domain AMQ28_RS04685 PF02803 Thiolase, C-terminal domain AMQ28_RS04700 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMQ28_RS04700 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMQ28_RS04705 PF01011 PQQ enzyme repeat AMQ28_RS04710 PF04966 Carbohydrate-selective porin, OprB family AMQ28_RS04715 PF02515 CoA-transferase family III AMQ28_RS04720 PF02311 AraC-like ligand binding domain AMQ28_RS04720 PF12833 Helix-turn-helix domain AMQ28_RS04725 PF00108 Thiolase, N-terminal domain AMQ28_RS04725 PF02803 Thiolase, C-terminal domain AMQ28_RS04730 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_RS04730 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMQ28_RS04730 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMQ28_RS04740 PF13673 Acetyltransferase (GNAT) domain AMQ28_RS04745 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMQ28_RS04745 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMQ28_RS04745 PF06827 Zinc finger found in FPG and IleRS AMQ28_RS04755 PF01741 Large-conductance mechanosensitive channel, MscL AMQ28_RS04760 PF00679 Elongation factor G C-terminus AMQ28_RS04760 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS04760 PF03144 Elongation factor Tu domain 2 AMQ28_RS04765 PF00860 Permease family AMQ28_RS04770 PF08468 Methyltransferase small domain N-terminal AMQ28_RS04770 PF05175 Methyltransferase small domain AMQ28_RS04775 PF00324 Amino acid permease AMQ28_RS04780 PF00550 Phosphopantetheine attachment site AMQ28_RS04790 PF00698 Acyl transferase domain AMQ28_RS04795 PF01783 Ribosomal L32p protein family AMQ28_RS04800 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMQ28_RS04805 PF04315 Elongation factor P hydroxylase AMQ28_RS04810 PF01300 Telomere recombination AMQ28_RS04820 PF02616 Segregation and condensation protein ScpA AMQ28_RS04825 PF04079 Segregation and condensation complex subunit ScpB AMQ28_RS04830 PF01479 S4 domain AMQ28_RS04830 PF00849 RNA pseudouridylate synthase AMQ28_RS04840 PF08241 Methyltransferase domain AMQ28_RS04845 PF00155 Aminotransferase class I and II AMQ28_RS04850 PF04055 Radical SAM superfamily AMQ28_RS04850 PF00202 Aminotransferase class-III AMQ28_RS04850 PF06968 Biotin and Thiamin Synthesis associated domain AMQ28_RS04855 PF12697 Alpha/beta hydrolase family AMQ28_RS04855 PF08241 Methyltransferase domain AMQ28_RS04860 PF00578 AhpC/TSA family AMQ28_RS04865 PF00210 Ferritin-like domain AMQ28_RS04870 PF12826 Helix-hairpin-helix motif AMQ28_RS04870 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMQ28_RS04870 PF01653 NAD-dependent DNA ligase adenylation domain AMQ28_RS04870 PF00533 BRCA1 C Terminus (BRCT) domain AMQ28_RS04870 PF03120 NAD-dependent DNA ligase OB-fold domain AMQ28_RS04885 PF13358 DDE superfamily endonuclease AMQ28_RS04890 PF00795 Carbon-nitrogen hydrolase AMQ28_RS04905 PF01527 Transposase AMQ28_RS04910 PF13276 HTH-like domain AMQ28_RS04910 PF13333 Integrase core domain AMQ28_RS04910 PF00665 Integrase core domain AMQ28_RS04920 PF01381 Helix-turn-helix AMQ28_RS04930 PF01653 NAD-dependent DNA ligase adenylation domain AMQ28_RS04930 PF00533 BRCA1 C Terminus (BRCT) domain AMQ28_RS04930 PF03120 NAD-dependent DNA ligase OB-fold domain AMQ28_RS04935 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMQ28_RS04935 PF12826 Helix-hairpin-helix motif AMQ28_RS04935 PF00533 BRCA1 C Terminus (BRCT) domain AMQ28_RS04935 PF03120 NAD-dependent DNA ligase OB-fold domain AMQ28_RS04935 PF01653 NAD-dependent DNA ligase adenylation domain AMQ28_RS04945 PF02463 RecF/RecN/SMC N terminal domain AMQ28_RS04945 PF06470 SMC proteins Flexible Hinge Domain AMQ28_RS04955 PF01925 Sulfite exporter TauE/SafE AMQ28_RS04965 PF03309 Type III pantothenate kinase AMQ28_RS04970 PF06821 Serine hydrolase AMQ28_RS04975 PF00448 SRP54-type protein, GTPase domain AMQ28_RS04975 PF02978 Signal peptide binding domain AMQ28_RS04975 PF02881 SRP54-type protein, helical bundle domain AMQ28_RS04990 PF07690 Major Facilitator Superfamily AMQ28_RS05005 PF01207 Dihydrouridine synthase (Dus) AMQ28_RS05010 PF08378 Nuclease-related domain AMQ28_RS05015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMQ28_RS05015 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMQ28_RS05020 PF00893 Small Multidrug Resistance protein AMQ28_RS05025 PF05275 Copper resistance protein B precursor (CopB) AMQ28_RS05030 PF00394 Multicopper oxidase AMQ28_RS05030 PF07731 Multicopper oxidase AMQ28_RS05030 PF07732 Multicopper oxidase AMQ28_RS05040 PF00834 Ribulose-phosphate 3 epimerase family AMQ28_RS05050 PF00756 Putative esterase AMQ28_RS05060 PF04445 Putative SAM-dependent methyltransferase AMQ28_RS05065 PF02673 Bacitracin resistance protein BacA AMQ28_RS05070 PF00814 Glycoprotease family AMQ28_RS05075 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS05080 PF00293 NUDIX domain AMQ28_RS05120 PF04715 Anthranilate synthase component I, N terminal region AMQ28_RS05120 PF00425 chorismate binding enzyme AMQ28_RS05125 PF00155 Aminotransferase class I and II AMQ28_RS05130 PF00815 Histidinol dehydrogenase AMQ28_RS05135 PF01634 ATP phosphoribosyltransferase AMQ28_RS05140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMQ28_RS05145 PF01722 BolA-like protein AMQ28_RS05150 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMQ28_RS05155 PF04963 Sigma-54 factor, core binding domain AMQ28_RS05155 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMQ28_RS05155 PF04552 Sigma-54, DNA binding domain AMQ28_RS05200 PF00795 Carbon-nitrogen hydrolase AMQ28_RS05205 PF02566 OsmC-like protein AMQ28_RS05210 PF00437 Type II/IV secretion system protein AMQ28_RS05230 PF00476 DNA polymerase family A AMQ28_RS05230 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMQ28_RS05230 PF01612 3'-5' exonuclease AMQ28_RS05230 PF01367 5'-3' exonuclease, C-terminal SAM fold AMQ28_RS05235 PF02325 YGGT family AMQ28_RS05240 PF03807 NADP oxidoreductase coenzyme F420-dependent AMQ28_RS05240 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMQ28_RS05245 PF01171 PP-loop family AMQ28_RS05245 PF09179 TilS substrate binding domain AMQ28_RS05245 PF11734 TilS substrate C-terminal domain AMQ28_RS05250 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMQ28_RS05255 PF02541 Ppx/GppA phosphatase family AMQ28_RS05260 PF00085 Thioredoxin AMQ28_RS05265 PF07498 Rho termination factor, N-terminal domain AMQ28_RS05265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMQ28_RS05265 PF07497 Rho termination factor, RNA-binding domain AMQ28_RS05275 PF00216 Bacterial DNA-binding protein AMQ28_RS05280 PF03484 tRNA synthetase B5 domain AMQ28_RS05280 PF03483 B3/4 domain AMQ28_RS05280 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMQ28_RS05280 PF01588 Putative tRNA binding domain AMQ28_RS05280 PF03147 Ferredoxin-fold anticodon binding domain AMQ28_RS05285 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMQ28_RS05285 PF01409 tRNA synthetases class II core domain (F) AMQ28_RS05300 PF00899 ThiF family AMQ28_RS05305 PF00929 Exonuclease AMQ28_RS05310 PF03193 RsgA GTPase AMQ28_RS05320 PF00462 Glutaredoxin AMQ28_RS05325 PF02556 Preprotein translocase subunit SecB AMQ28_RS05340 PF01026 TatD related DNase AMQ28_RS05355 PF16658 Class II release factor RF3, C-terminal domain AMQ28_RS05355 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS05355 PF03144 Elongation factor Tu domain 2 AMQ28_RS05370 PF04851 Type III restriction enzyme, res subunit AMQ28_RS05370 PF08774 VRR-NUC domain AMQ28_RS05375 PF01555 DNA methylase AMQ28_RS05375 PF18273 Type III R-M EcoP15I C-terminal domain AMQ28_RS05385 PF00176 SNF2 family N-terminal domain AMQ28_RS05385 PF00271 Helicase conserved C-terminal domain AMQ28_RS05440 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS05440 PF00563 EAL domain AMQ28_RS05440 PF03707 Bacterial signalling protein N terminal repeat AMQ28_RS05450 PF17804 Tail specific protease N-terminal domain AMQ28_RS05450 PF00595 PDZ domain AMQ28_RS05450 PF03572 Peptidase family S41 AMQ28_RS05450 PF11818 C-terminal domain of tail specific protease (DUF3340) AMQ28_RS05455 PF00933 Glycosyl hydrolase family 3 N terminal domain AMQ28_RS05465 PF00561 alpha/beta hydrolase fold AMQ28_RS05470 PF00171 Aldehyde dehydrogenase family AMQ28_RS05480 PF00871 Acetokinase family AMQ28_RS05485 PF07085 DRTGG domain AMQ28_RS05485 PF01515 Phosphate acetyl/butaryl transferase AMQ28_RS05490 PF13649 Methyltransferase domain AMQ28_RS05495 PF05683 Fumarase C-terminus AMQ28_RS05495 PF05681 Fumarate hydratase (Fumerase) AMQ28_RS05500 PF13276 HTH-like domain AMQ28_RS05500 PF00665 Integrase core domain AMQ28_RS05500 PF13333 Integrase core domain AMQ28_RS05515 PF06689 ClpX C4-type zinc finger AMQ28_RS05515 PF10431 C-terminal, D2-small domain, of ClpB protein AMQ28_RS05515 PF07724 AAA domain (Cdc48 subfamily) AMQ28_RS05520 PF00574 Clp protease AMQ28_RS05525 PF05698 Bacterial trigger factor protein (TF) C-terminus AMQ28_RS05525 PF05697 Bacterial trigger factor protein (TF) AMQ28_RS05525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_RS05530 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS05530 PF00593 TonB dependent receptor AMQ28_RS05535 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS05535 PF00593 TonB dependent receptor AMQ28_RS05540 PF13640 2OG-Fe(II) oxygenase superfamily AMQ28_RS05540 PF18331 PKHD-type hydroxylase C-terminal domain AMQ28_RS05545 PF00593 TonB dependent receptor AMQ28_RS05545 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS05550 PF18331 PKHD-type hydroxylase C-terminal domain AMQ28_RS05550 PF13640 2OG-Fe(II) oxygenase superfamily AMQ28_RS05555 PF01070 FMN-dependent dehydrogenase AMQ28_RS05560 PF00682 HMGL-like AMQ28_RS05560 PF08502 LeuA allosteric (dimerisation) domain AMQ28_RS05565 PF00561 alpha/beta hydrolase fold AMQ28_RS05570 PF00561 alpha/beta hydrolase fold AMQ28_RS05570 PF07021 Methionine biosynthesis protein MetW AMQ28_RS05580 PF01725 Ham1 family AMQ28_RS05590 PF02416 mttA/Hcf106 family AMQ28_RS05595 PF02416 mttA/Hcf106 family AMQ28_RS05600 PF00902 Sec-independent protein translocase protein (TatC) AMQ28_RS05615 PF01790 Prolipoprotein diacylglyceryl transferase AMQ28_RS05630 PF00453 Ribosomal protein L20 AMQ28_RS05635 PF01632 Ribosomal protein L35 AMQ28_RS05645 PF09335 SNARE associated Golgi protein AMQ28_RS05655 PF00043 Glutathione S-transferase, C-terminal domain AMQ28_RS05655 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_RS05660 PF00011 Hsp20/alpha crystallin family AMQ28_RS05670 PF00707 Translation initiation factor IF-3, C-terminal domain AMQ28_RS05670 PF05198 Translation initiation factor IF-3, N-terminal domain AMQ28_RS05675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMQ28_RS05675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_RS05675 PF03129 Anticodon binding domain AMQ28_RS05675 PF02824 TGS domain AMQ28_RS05680 PF00501 AMP-binding enzyme AMQ28_RS05680 PF13193 AMP-binding enzyme C-terminal domain AMQ28_RS05685 PF04751 Protein of unknown function (DUF615) AMQ28_RS05690 PF00381 PTS HPr component phosphorylation site AMQ28_RS05695 PF03668 P-loop ATPase protein family AMQ28_RS05700 PF02569 Pantoate-beta-alanine ligase AMQ28_RS05705 PF02548 Ketopantoate hydroxymethyltransferase AMQ28_RS05710 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMQ28_RS05715 PF12626 Polymerase A arginine-rich C-terminus AMQ28_RS05715 PF01743 Poly A polymerase head domain AMQ28_RS05715 PF12627 Probable RNA and SrmB- binding site of polymerase A AMQ28_RS05720 PF10531 SLBB domain AMQ28_RS05725 PF03819 MazG nucleotide pyrophosphohydrolase domain AMQ28_RS05730 PF01648 4'-phosphopantetheinyl transferase superfamily AMQ28_RS05735 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMQ28_RS05735 PF01926 50S ribosome-binding GTPase AMQ28_RS05740 PF01011 PQQ enzyme repeat AMQ28_RS05740 PF13360 PQQ-like domain AMQ28_RS05750 PF03129 Anticodon binding domain AMQ28_RS05750 PF13393 Histidyl-tRNA synthetase AMQ28_RS05755 PF04551 GcpE protein AMQ28_RS05760 PF13464 Domain of unknown function (DUF4115) AMQ28_RS05770 PF04055 Radical SAM superfamily AMQ28_RS05775 PF00334 Nucleoside diphosphate kinase AMQ28_RS05780 PF04384 Iron-sulphur cluster assembly AMQ28_RS05785 PF01569 PAP2 superfamily AMQ28_RS05790 PF00534 Glycosyl transferases group 1 AMQ28_RS05790 PF13439 Glycosyltransferase Family 4 AMQ28_RS05820 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMQ28_RS05820 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMQ28_RS05825 PF10369 Small subunit of acetolactate synthase AMQ28_RS05830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMQ28_RS05830 PF00205 Thiamine pyrophosphate enzyme, central domain AMQ28_RS05830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMQ28_RS05840 PF08264 Anticodon-binding domain of tRNA AMQ28_RS05840 PF00133 tRNA synthetases class I (I, L, M and V) AMQ28_RS05840 PF13603 Leucyl-tRNA synthetase, Domain 2 AMQ28_RS05840 PF09334 tRNA synthetases class I (M) AMQ28_RS05855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_RS05860 PF12704 MacB-like periplasmic core domain AMQ28_RS05860 PF02687 FtsX-like permease family AMQ28_RS05860 PF00005 ABC transporter AMQ28_RS05865 PF02321 Outer membrane efflux protein AMQ28_RS05875 PF00303 Thymidylate synthase AMQ28_RS05880 PF00186 Dihydrofolate reductase AMQ28_RS05895 PF01625 Peptide methionine sulfoxide reductase AMQ28_RS05905 PF01618 MotA/TolQ/ExbB proton channel family AMQ28_RS05915 PF01842 ACT domain AMQ28_RS05915 PF00551 Formyl transferase AMQ28_RS05920 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS05920 PF08360 QacR-like protein, C-terminal region AMQ28_RS05925 PF00171 Aldehyde dehydrogenase family AMQ28_RS05930 PF00830 Ribosomal L28 family AMQ28_RS05935 PF00471 Ribosomal protein L33 AMQ28_RS05940 PF00999 Sodium/hydrogen exchanger family AMQ28_RS05940 PF02254 TrkA-N domain AMQ28_RS05965 PF13361 UvrD-like helicase C-terminal domain AMQ28_RS05965 PF00580 UvrD/REP helicase N-terminal domain AMQ28_RS05970 PF02595 Glycerate kinase family AMQ28_RS05985 PF01751 Toprim domain AMQ28_RS05985 PF08272 Topoisomerase I zinc-ribbon-like AMQ28_RS05985 PF01131 DNA topoisomerase AMQ28_RS05985 PF01396 Topoisomerase DNA binding C4 zinc finger AMQ28_RS06000 PF04102 SlyX AMQ28_RS06005 PF12848 ABC transporter AMQ28_RS06005 PF16326 ABC transporter C-terminal domain AMQ28_RS06005 PF00005 ABC transporter AMQ28_RS06010 PF03279 Bacterial lipid A biosynthesis acyltransferase AMQ28_RS06025 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMQ28_RS06025 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMQ28_RS06045 PF01416 tRNA pseudouridine synthase AMQ28_RS06055 PF01176 Translation initiation factor 1A / IF-1 AMQ28_RS06070 PF00180 Isocitrate/isopropylmalate dehydrogenase AMQ28_RS06080 PF00694 Aconitase C-terminal domain AMQ28_RS06085 PF00330 Aconitase family (aconitate hydratase) AMQ28_RS06100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS06100 PF03466 LysR substrate binding domain AMQ28_RS06110 PF00145 C-5 cytosine-specific DNA methylase AMQ28_RS06110 PF01381 Helix-turn-helix AMQ28_RS06115 PF00196 Bacterial regulatory proteins, luxR family AMQ28_RS06115 PF00072 Response regulator receiver domain AMQ28_RS06130 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AMQ28_RS06140 PF13333 Integrase core domain AMQ28_RS06140 PF00665 Integrase core domain AMQ28_RS06140 PF13276 HTH-like domain AMQ28_RS06155 PF00872 Transposase, Mutator family AMQ28_RS06170 PF13936 Helix-turn-helix domain AMQ28_RS06170 PF00665 Integrase core domain AMQ28_RS06185 PF00293 NUDIX domain AMQ28_RS06190 PF05524 PEP-utilising enzyme, N-terminal AMQ28_RS06190 PF00391 PEP-utilising enzyme, mobile domain AMQ28_RS06190 PF02896 PEP-utilising enzyme, TIM barrel domain AMQ28_RS06190 PF01590 GAF domain AMQ28_RS06200 PF18158 Adaptive response protein AidB N-terminal domain AMQ28_RS06200 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS06200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS06210 PF06628 Catalase-related immune-responsive AMQ28_RS06210 PF00199 Catalase AMQ28_RS06215 PF12706 Beta-lactamase superfamily domain AMQ28_RS06220 PF01545 Cation efflux family AMQ28_RS06220 PF16916 Dimerisation domain of Zinc Transporter AMQ28_RS06225 PF03466 LysR substrate binding domain AMQ28_RS06225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS06235 PF00849 RNA pseudouridylate synthase AMQ28_RS06235 PF01479 S4 domain AMQ28_RS06240 PF12111 Polyribonucleotide phosphorylase C terminal AMQ28_RS06240 PF00575 S1 RNA binding domain AMQ28_RS06240 PF10150 Ribonuclease E/G family AMQ28_RS06245 PF13193 AMP-binding enzyme C-terminal domain AMQ28_RS06245 PF00501 AMP-binding enzyme AMQ28_RS06270 PF04024 PspC domain AMQ28_RS06280 PF02091 Glycyl-tRNA synthetase alpha subunit AMQ28_RS06285 PF02092 Glycyl-tRNA synthetase beta subunit AMQ28_RS06285 PF05746 DALR anticodon binding domain AMQ28_RS06310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_RS06310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_RS06340 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS06340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMQ28_RS06350 PF03884 DNA gyrase inhibitor YacG AMQ28_RS06355 PF00753 Metallo-beta-lactamase superfamily AMQ28_RS06360 PF00762 Ferrochelatase AMQ28_RS06370 PF01177 Asp/Glu/Hydantoin racemase AMQ28_RS06390 PF01206 Sulfurtransferase TusA AMQ28_RS06395 PF03471 Transporter associated domain AMQ28_RS06395 PF00571 CBS domain AMQ28_RS06400 PF00795 Carbon-nitrogen hydrolase AMQ28_RS06410 PF07963 Prokaryotic N-terminal methylation motif AMQ28_RS06410 PF08334 Type II secretion system (T2SS), protein G AMQ28_RS06415 PF00482 Type II secretion system (T2SS), protein F AMQ28_RS06420 PF00270 DEAD/DEAH box helicase AMQ28_RS06420 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMQ28_RS06420 PF00271 Helicase conserved C-terminal domain AMQ28_RS06420 PF17764 3′ DNA-binding domain (3′BD) AMQ28_RS06420 PF18074 Primosomal protein N C-terminal domain AMQ28_RS06425 PF00999 Sodium/hydrogen exchanger family AMQ28_RS06425 PF02254 TrkA-N domain AMQ28_RS06430 PF01430 Hsp33 protein AMQ28_RS06435 PF13185 GAF domain AMQ28_RS06435 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS06440 PF00226 DnaJ domain AMQ28_RS06440 PF01556 DnaJ C terminal domain AMQ28_RS06455 PF01544 CorA-like Mg2+ transporter protein AMQ28_RS06460 PF01138 3' exoribonuclease family, domain 1 AMQ28_RS06460 PF00575 S1 RNA binding domain AMQ28_RS06460 PF00013 KH domain AMQ28_RS06460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMQ28_RS06460 PF03725 3' exoribonuclease family, domain 2 AMQ28_RS06465 PF00312 Ribosomal protein S15 AMQ28_RS06470 PF00144 Beta-lactamase AMQ28_RS06475 PF13538 UvrD-like helicase C-terminal domain AMQ28_RS06480 PF12705 PD-(D/E)XK nuclease superfamily AMQ28_RS06480 PF00580 UvrD/REP helicase N-terminal domain AMQ28_RS06480 PF13361 UvrD-like helicase C-terminal domain AMQ28_RS06485 PF17946 RecC C-terminal domain AMQ28_RS06495 PF03976 Polyphosphate kinase 2 (PPK2) AMQ28_RS06505 PF01209 ubiE/COQ5 methyltransferase family AMQ28_RS06515 PF03109 ABC1 family AMQ28_RS06525 PF01502 Phosphoribosyl-AMP cyclohydrolase AMQ28_RS06535 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMQ28_RS06535 PF00361 Proton-conducting membrane transporter AMQ28_RS06535 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMQ28_RS06535 PF13244 Domain of unknown function (DUF4040) AMQ28_RS06540 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMQ28_RS06545 PF00361 Proton-conducting membrane transporter AMQ28_RS06555 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMQ28_RS06560 PF03334 Na+/H+ antiporter subunit AMQ28_RS06565 PF02033 Ribosome-binding factor A AMQ28_RS06570 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS06570 PF04760 Translation initiation factor IF-2, N-terminal region AMQ28_RS06570 PF11987 Translation-initiation factor 2 AMQ28_RS06570 PF08364 Bacterial translation initiation factor IF-2 associated region AMQ28_RS06575 PF13184 NusA-like KH domain AMQ28_RS06575 PF08529 NusA N-terminal domain AMQ28_RS06575 PF00575 S1 RNA binding domain AMQ28_RS06580 PF17384 RimP C-terminal SH3 domain AMQ28_RS06580 PF02576 RimP N-terminal domain AMQ28_RS06605 PF03840 Preprotein translocase SecG subunit AMQ28_RS06610 PF00121 Triosephosphate isomerase AMQ28_RS06615 PF00437 Type II/IV secretion system protein AMQ28_RS06615 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMQ28_RS06620 PF00482 Type II secretion system (T2SS), protein F AMQ28_RS06625 PF01478 Type IV leader peptidase family AMQ28_RS06625 PF06750 Bacterial Peptidase A24 N-terminal domain AMQ28_RS06630 PF01121 Dephospho-CoA kinase AMQ28_RS06640 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMQ28_RS06640 PF00588 SpoU rRNA Methylase family AMQ28_RS06645 PF06865 Pyrimidine/purine nucleoside phosphorylase AMQ28_RS06650 PF02463 RecF/RecN/SMC N terminal domain AMQ28_RS06655 PF02622 Uncharacterized ACR, COG1678 AMQ28_RS06660 PF03652 Holliday junction resolvase AMQ28_RS06665 PF13533 Biotin-lipoyl like AMQ28_RS06675 PF04632 Fusaric acid resistance protein family AMQ28_RS06690 PF00005 ABC transporter AMQ28_RS06690 PF00664 ABC transporter transmembrane region AMQ28_RS06695 PF01895 PhoU domain AMQ28_RS06700 PF02321 Outer membrane efflux protein AMQ28_RS06710 PF13667 ThiC-associated domain AMQ28_RS06710 PF01964 Radical SAM ThiC family AMQ28_RS06715 PF00293 NUDIX domain AMQ28_RS06720 PF00149 Calcineurin-like phosphoesterase AMQ28_RS06725 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMQ28_RS06730 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMQ28_RS06735 PF01098 Cell cycle protein AMQ28_RS06740 PF02875 Mur ligase family, glutamate ligase domain AMQ28_RS06740 PF08245 Mur ligase middle domain AMQ28_RS06750 PF07664 Ferrous iron transport protein B C terminus AMQ28_RS06750 PF02421 Ferrous iron transport protein B AMQ28_RS06750 PF07670 Nucleoside recognition AMQ28_RS06760 PF02899 Phage integrase, N-terminal SAM-like domain AMQ28_RS06760 PF00589 Phage integrase family AMQ28_RS06765 PF13098 Thioredoxin-like domain AMQ28_RS06765 PF10411 Disulfide bond isomerase protein N-terminus AMQ28_RS06770 PF03447 Homoserine dehydrogenase, NAD binding domain AMQ28_RS06770 PF00742 Homoserine dehydrogenase AMQ28_RS06770 PF01842 ACT domain AMQ28_RS06775 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_RS06780 PF00768 D-alanyl-D-alanine carboxypeptidase AMQ28_RS06785 PF00196 Bacterial regulatory proteins, luxR family AMQ28_RS06785 PF00072 Response regulator receiver domain AMQ28_RS06790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS06790 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS06795 PF00072 Response regulator receiver domain AMQ28_RS06795 PF02954 Bacterial regulatory protein, Fis family AMQ28_RS06795 PF00158 Sigma-54 interaction domain AMQ28_RS06800 PF03572 Peptidase family S41 AMQ28_RS06800 PF00595 PDZ domain AMQ28_RS06805 PF01676 Metalloenzyme superfamily AMQ28_RS06805 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMQ28_RS06810 PF03739 Lipopolysaccharide export system permease LptF/LptG AMQ28_RS06815 PF03739 Lipopolysaccharide export system permease LptF/LptG AMQ28_RS06820 PF00883 Cytosol aminopeptidase family, catalytic domain AMQ28_RS06820 PF02789 Cytosol aminopeptidase family, N-terminal domain AMQ28_RS06840 PF09335 SNARE associated Golgi protein AMQ28_RS06845 PF00677 Lumazine binding domain AMQ28_RS06855 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMQ28_RS06855 PF01872 RibD C-terminal domain AMQ28_RS06860 PF03477 ATP cone domain AMQ28_RS06865 PF00909 Ammonium Transporter Family AMQ28_RS06870 PF00543 Nitrogen regulatory protein P-II AMQ28_RS06880 PF01078 Magnesium chelatase, subunit ChlI AMQ28_RS06880 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMQ28_RS06895 PF03573 outer membrane porin, OprD family AMQ28_RS06900 PF00719 Inorganic pyrophosphatase AMQ28_RS06915 PF13193 AMP-binding enzyme C-terminal domain AMQ28_RS06915 PF00501 AMP-binding enzyme AMQ28_RS06920 PF00521 DNA gyrase/topoisomerase IV, subunit A AMQ28_RS06920 PF03989 DNA gyrase C-terminal domain, beta-propeller AMQ28_RS06925 PF07690 Major Facilitator Superfamily AMQ28_RS06930 PF03458 UPF0126 domain AMQ28_RS06935 PF02810 SEC-C motif AMQ28_RS06940 PF03741 Integral membrane protein TerC family AMQ28_RS06940 PF03471 Transporter associated domain AMQ28_RS06945 PF03641 Possible lysine decarboxylase AMQ28_RS06960 PF07690 Major Facilitator Superfamily AMQ28_RS06970 PF11798 IMS family HHH motif AMQ28_RS06970 PF00817 impB/mucB/samB family AMQ28_RS06970 PF11799 impB/mucB/samB family C-terminal domain AMQ28_RS06985 PF08497 Radical SAM N-terminal AMQ28_RS06985 PF11842 Domain of unknown function (DUF3362) AMQ28_RS06985 PF04055 Radical SAM superfamily AMQ28_RS06990 PF07690 Major Facilitator Superfamily AMQ28_RS07020 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS07040 PF01327 Polypeptide deformylase AMQ28_RS07050 PF02481 DNA recombination-mediator protein A AMQ28_RS07050 PF17782 DprA winged helix domain AMQ28_RS07055 PF01300 Telomere recombination AMQ28_RS07060 PF00892 EamA-like transporter family AMQ28_RS07075 PF00255 Glutathione peroxidase AMQ28_RS07085 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_RS07085 PF00107 Zinc-binding dehydrogenase AMQ28_RS07100 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMQ28_RS07105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMQ28_RS07105 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMQ28_RS07110 PF00231 ATP synthase AMQ28_RS07115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMQ28_RS07115 PF00306 ATP synthase alpha/beta chain, C terminal domain AMQ28_RS07115 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMQ28_RS07120 PF00213 ATP synthase delta (OSCP) subunit AMQ28_RS07125 PF00430 ATP synthase B/B' CF(0) AMQ28_RS07130 PF00137 ATP synthase subunit C AMQ28_RS07135 PF00119 ATP synthase A chain AMQ28_RS07155 PF00005 ABC transporter AMQ28_RS07160 PF00950 ABC 3 transport family AMQ28_RS07165 PF01810 LysE type translocator AMQ28_RS07170 PF04261 Dyp-type peroxidase family AMQ28_RS07175 PF00155 Aminotransferase class I and II AMQ28_RS07180 PF01554 MatE AMQ28_RS07185 PF00005 ABC transporter AMQ28_RS07195 PF00106 short chain dehydrogenase AMQ28_RS07205 PF00072 Response regulator receiver domain AMQ28_RS07205 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS07210 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS07210 PF00989 PAS fold AMQ28_RS07210 PF11808 Phosphate regulon sensor protein PhoR AMQ28_RS07220 PF02678 Pirin AMQ28_RS07220 PF05726 Pirin C-terminal cupin domain AMQ28_RS07225 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS07225 PF00072 Response regulator receiver domain AMQ28_RS07230 PF14338 Mrr N-terminal domain AMQ28_RS07230 PF04471 Restriction endonuclease AMQ28_RS07235 PF02540 NAD synthase AMQ28_RS07235 PF00958 GMP synthase C terminal domain AMQ28_RS07235 PF00117 Glutamine amidotransferase class-I AMQ28_RS07245 PF07681 DoxX AMQ28_RS07250 PF09335 SNARE associated Golgi protein AMQ28_RS07265 PF13614 AAA domain AMQ28_RS07275 PF01722 BolA-like protein AMQ28_RS07310 PF07120 Protein of unknown function (DUF1376) AMQ28_RS07315 PF01695 IstB-like ATP binding protein AMQ28_RS07325 PF00293 NUDIX domain AMQ28_RS07390 PF13276 HTH-like domain AMQ28_RS07390 PF00665 Integrase core domain AMQ28_RS07390 PF13333 Integrase core domain AMQ28_RS07400 PF00271 Helicase conserved C-terminal domain AMQ28_RS07400 PF12419 SNF2 Helicase protein AMQ28_RS07400 PF00176 SNF2 family N-terminal domain AMQ28_RS07420 PF13276 HTH-like domain AMQ28_RS07420 PF13333 Integrase core domain AMQ28_RS07420 PF00665 Integrase core domain AMQ28_RS07435 PF00817 impB/mucB/samB family AMQ28_RS07435 PF11799 impB/mucB/samB family C-terminal domain AMQ28_RS07435 PF13438 Domain of unknown function (DUF4113) AMQ28_RS07440 PF13610 DDE domain AMQ28_RS07455 PF02814 UreE urease accessory protein, N-terminal domain AMQ28_RS07455 PF05194 UreE urease accessory protein, C-terminal domain AMQ28_RS07460 PF01730 UreF AMQ28_RS07465 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMQ28_RS07475 PF01774 UreD urease accessory protein AMQ28_RS07480 PF00547 Urease, gamma subunit AMQ28_RS07485 PF00699 Urease beta subunit AMQ28_RS07490 PF01979 Amidohydrolase family AMQ28_RS07490 PF00449 Urease alpha-subunit, N-terminal domain AMQ28_RS07500 PF00753 Metallo-beta-lactamase superfamily AMQ28_RS07510 PF04143 Sulphur transport AMQ28_RS07520 PF13098 Thioredoxin-like domain AMQ28_RS07525 PF08534 Redoxin AMQ28_RS07530 PF11412 Disulphide bond corrector protein DsbC AMQ28_RS07530 PF02683 Cytochrome C biogenesis protein transmembrane region AMQ28_RS07535 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS07535 PF00072 Response regulator receiver domain AMQ28_RS07540 PF08521 Two-component sensor kinase N-terminal AMQ28_RS07540 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS07540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS07545 PF13737 Transposase DDE domain AMQ28_RS07565 PF00330 Aconitase family (aconitate hydratase) AMQ28_RS07565 PF00694 Aconitase C-terminal domain AMQ28_RS07580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMQ28_RS07580 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS07585 PF07690 Major Facilitator Superfamily AMQ28_RS07590 PF01527 Transposase AMQ28_RS07595 PF00665 Integrase core domain AMQ28_RS07595 PF13333 Integrase core domain AMQ28_RS07595 PF13276 HTH-like domain AMQ28_RS07600 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMQ28_RS07605 PF07690 Major Facilitator Superfamily AMQ28_RS07610 PF13359 DDE superfamily endonuclease AMQ28_RS07610 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS07625 PF07995 Glucose / Sorbosone dehydrogenase AMQ28_RS07635 PF00925 GTP cyclohydrolase II AMQ28_RS07635 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMQ28_RS07640 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMQ28_RS07645 PF01029 NusB family AMQ28_RS07650 PF00586 AIR synthase related protein, N-terminal domain AMQ28_RS07650 PF02769 AIR synthase related protein, C-terminal domain AMQ28_RS07655 PF04608 Phosphatidylglycerophosphatase A AMQ28_RS07660 PF12804 MobA-like NTP transferase domain AMQ28_RS07660 PF14602 Hexapeptide repeat of succinyl-transferase AMQ28_RS07660 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS07665 PF01380 SIS domain AMQ28_RS07670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMQ28_RS07670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMQ28_RS07670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMQ28_RS07670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMQ28_RS07675 PF16363 GDP-mannose 4,6 dehydratase AMQ28_RS07680 PF00342 Phosphoglucose isomerase AMQ28_RS07685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMQ28_RS07685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMQ28_RS07685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMQ28_RS07690 PF00483 Nucleotidyl transferase AMQ28_RS07695 PF02719 Polysaccharide biosynthesis protein AMQ28_RS07700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMQ28_RS07720 PF02397 Bacterial sugar transferase AMQ28_RS07725 PF13477 Glycosyl transferase 4-like AMQ28_RS07725 PF00534 Glycosyl transferases group 1 AMQ28_RS07735 PF13439 Glycosyltransferase Family 4 AMQ28_RS07735 PF00534 Glycosyl transferases group 1 AMQ28_RS07745 PF00534 Glycosyl transferases group 1 AMQ28_RS07760 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMQ28_RS07760 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMQ28_RS07760 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMQ28_RS07765 PF02563 Polysaccharide biosynthesis/export protein AMQ28_RS07765 PF10531 SLBB domain AMQ28_RS07765 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AMQ28_RS07770 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMQ28_RS07775 PF13614 AAA domain AMQ28_RS07775 PF02706 Chain length determinant protein AMQ28_RS07775 PF13807 G-rich domain on putative tyrosine kinase AMQ28_RS07780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMQ28_RS07780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_RS07785 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMQ28_RS07785 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_RS07790 PF02230 Phospholipase/Carboxylesterase AMQ28_RS07800 PF14815 NUDIX domain AMQ28_RS07800 PF00730 HhH-GPD superfamily base excision DNA repair protein AMQ28_RS07800 PF00633 Helix-hairpin-helix motif AMQ28_RS07815 PF03352 Methyladenine glycosylase AMQ28_RS07820 PF00107 Zinc-binding dehydrogenase AMQ28_RS07820 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_RS07825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS07825 PF03466 LysR substrate binding domain AMQ28_RS07835 PF05173 Dihydrodipicolinate reductase, C-terminus AMQ28_RS07835 PF01113 Dihydrodipicolinate reductase, N-terminus AMQ28_RS07845 PF00684 DnaJ central domain AMQ28_RS07845 PF01556 DnaJ C terminal domain AMQ28_RS07845 PF00226 DnaJ domain AMQ28_RS07855 PF00873 AcrB/AcrD/AcrF family AMQ28_RS07860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_RS07865 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS07870 PF00311 Phosphoenolpyruvate carboxylase AMQ28_RS07875 PF00860 Permease family AMQ28_RS07880 PF03466 LysR substrate binding domain AMQ28_RS07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS07900 PF00920 Dehydratase family AMQ28_RS07905 PF00920 Dehydratase family AMQ28_RS07910 PF00551 Formyl transferase AMQ28_RS07910 PF02911 Formyl transferase, C-terminal domain AMQ28_RS07915 PF01189 16S rRNA methyltransferase RsmB/F AMQ28_RS07915 PF01029 NusB family AMQ28_RS07920 PF02535 ZIP Zinc transporter AMQ28_RS07925 PF00209 Sodium:neurotransmitter symporter family AMQ28_RS07965 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMQ28_RS07975 PF07859 alpha/beta hydrolase fold AMQ28_RS07990 PF01025 GrpE AMQ28_RS07995 PF00012 Hsp70 protein AMQ28_RS08045 PF01521 Iron-sulphur cluster biosynthesis AMQ28_RS08065 PF12848 ABC transporter AMQ28_RS08065 PF00005 ABC transporter AMQ28_RS08075 PF00204 DNA gyrase B AMQ28_RS08075 PF00986 DNA gyrase B subunit, carboxyl terminus AMQ28_RS08075 PF18053 DNA gyrase B subunit insert domain AMQ28_RS08075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS08075 PF01751 Toprim domain AMQ28_RS08080 PF02463 RecF/RecN/SMC N terminal domain AMQ28_RS08085 PF02767 DNA polymerase III beta subunit, central domain AMQ28_RS08085 PF00712 DNA polymerase III beta subunit, N-terminal domain AMQ28_RS08085 PF02768 DNA polymerase III beta subunit, C-terminal domain AMQ28_RS08090 PF08299 Bacterial dnaA protein helix-turn-helix AMQ28_RS08090 PF00308 Bacterial dnaA protein AMQ28_RS08090 PF11638 DnaA N-terminal domain AMQ28_RS08095 PF00468 Ribosomal protein L34 AMQ28_RS08100 PF00825 Ribonuclease P AMQ28_RS08105 PF01809 Putative membrane protein insertion efficiency factor AMQ28_RS08110 PF14849 YidC periplasmic domain AMQ28_RS08110 PF02096 60Kd inner membrane protein AMQ28_RS08115 PF10396 GTP-binding protein TrmE N-terminus AMQ28_RS08115 PF12631 MnmE helical domain AMQ28_RS08115 PF01926 50S ribosome-binding GTPase AMQ28_RS08125 PF10411 Disulfide bond isomerase protein N-terminus AMQ28_RS08125 PF13098 Thioredoxin-like domain AMQ28_RS08135 PF00156 Phosphoribosyl transferase domain AMQ28_RS08140 PF01979 Amidohydrolase family AMQ28_RS08145 PF03741 Integral membrane protein TerC family AMQ28_RS08150 PF07690 Major Facilitator Superfamily AMQ28_RS08155 PF14542 GCN5-related N-acetyl-transferase AMQ28_RS08160 PF02875 Mur ligase family, glutamate ligase domain AMQ28_RS08160 PF01225 Mur ligase family, catalytic domain AMQ28_RS08160 PF08245 Mur ligase middle domain AMQ28_RS08170 PF00731 AIR carboxylase AMQ28_RS08175 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMQ28_RS08175 PF02222 ATP-grasp domain AMQ28_RS08180 PF13406 Transglycosylase SLT domain AMQ28_RS08185 PF03702 Anhydro-N-acetylmuramic acid kinase AMQ28_RS08190 PF00579 tRNA synthetases class I (W and Y) AMQ28_RS08220 PF07995 Glucose / Sorbosone dehydrogenase AMQ28_RS08230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_RS08235 PF01252 Signal peptidase (SPase) II AMQ28_RS08240 PF08264 Anticodon-binding domain of tRNA AMQ28_RS08240 PF06827 Zinc finger found in FPG and IleRS AMQ28_RS08240 PF00133 tRNA synthetases class I (I, L, M and V) AMQ28_RS08245 PF01687 Riboflavin kinase AMQ28_RS08245 PF06574 FAD synthetase AMQ28_RS08260 PF08362 YcdC-like protein, C-terminal region AMQ28_RS08260 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS08265 PF00005 ABC transporter AMQ28_RS08270 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS08275 PF00296 Luciferase-like monooxygenase AMQ28_RS08290 PF00296 Luciferase-like monooxygenase AMQ28_RS08295 PF09084 NMT1/THI5 like AMQ28_RS08300 PF09084 NMT1/THI5 like AMQ28_RS08305 PF00583 Acetyltransferase (GNAT) family AMQ28_RS08305 PF00696 Amino acid kinase family AMQ28_RS08320 PF00106 short chain dehydrogenase AMQ28_RS08325 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_RS08335 PF01323 DSBA-like thioredoxin domain AMQ28_RS08340 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS08345 PF00970 Oxidoreductase FAD-binding domain AMQ28_RS08345 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_RS08345 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS08350 PF00487 Fatty acid desaturase AMQ28_RS08355 PF01138 3' exoribonuclease family, domain 1 AMQ28_RS08355 PF03725 3' exoribonuclease family, domain 2 AMQ28_RS08360 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMQ28_RS08360 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMQ28_RS08365 PF01510 N-acetylmuramoyl-L-alanine amidase AMQ28_RS08370 PF03023 Lipid II flippase MurJ AMQ28_RS08375 PF03692 Putative zinc- or iron-chelating domain AMQ28_RS08380 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS08380 PF03707 Bacterial signalling protein N terminal repeat AMQ28_RS08380 PF00563 EAL domain AMQ28_RS08385 PF16193 AAA C-terminal domain AMQ28_RS08385 PF12002 MgsA AAA+ ATPase C terminal AMQ28_RS08385 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_RS08390 PF01259 SAICAR synthetase AMQ28_RS08400 PF00701 Dihydrodipicolinate synthetase family AMQ28_RS08405 PF00857 Isochorismatase family AMQ28_RS08410 PF01758 Sodium Bile acid symporter family AMQ28_RS08435 PF02580 D-Tyr-tRNA(Tyr) deacylase AMQ28_RS08440 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMQ28_RS08440 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMQ28_RS08445 PF00581 Rhodanese-like domain AMQ28_RS08450 PF02666 Phosphatidylserine decarboxylase AMQ28_RS08460 PF00750 tRNA synthetases class I (R) AMQ28_RS08460 PF05746 DALR anticodon binding domain AMQ28_RS08460 PF03485 Arginyl tRNA synthetase N terminal domain AMQ28_RS08470 PF04286 Protein of unknown function (DUF445) AMQ28_RS08490 PF04262 Glutamate-cysteine ligase AMQ28_RS08495 PF02600 Disulfide bond formation protein DsbB AMQ28_RS08505 PF05728 Uncharacterised protein family (UPF0227) AMQ28_RS08510 PF00204 DNA gyrase B AMQ28_RS08510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS08510 PF01751 Toprim domain AMQ28_RS08510 PF00986 DNA gyrase B subunit, carboxyl terminus AMQ28_RS08540 PF11412 Disulphide bond corrector protein DsbC AMQ28_RS08540 PF02683 Cytochrome C biogenesis protein transmembrane region AMQ28_RS08545 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS08550 PF02525 Flavodoxin-like fold AMQ28_RS08555 PF07859 alpha/beta hydrolase fold AMQ28_RS08565 PF03960 ArsC family AMQ28_RS08570 PF03372 Endonuclease/Exonuclease/phosphatase family AMQ28_RS08575 PF00156 Phosphoribosyl transferase domain AMQ28_RS08580 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS08580 PF00593 TonB dependent receptor AMQ28_RS08585 PF13737 Transposase DDE domain AMQ28_RS08590 PF01047 MarR family AMQ28_RS08595 PF00255 Glutathione peroxidase AMQ28_RS08600 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMQ28_RS08600 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMQ28_RS08605 PF04101 Glycosyltransferase family 28 C-terminal domain AMQ28_RS08605 PF03033 Glycosyltransferase family 28 N-terminal domain AMQ28_RS08610 PF01225 Mur ligase family, catalytic domain AMQ28_RS08610 PF02875 Mur ligase family, glutamate ligase domain AMQ28_RS08610 PF08245 Mur ligase middle domain AMQ28_RS08615 PF07478 D-ala D-ala ligase C-terminus AMQ28_RS08615 PF01820 D-ala D-ala ligase N-terminus AMQ28_RS08620 PF03799 Cell division protein FtsQ AMQ28_RS08620 PF08478 POTRA domain, FtsQ-type AMQ28_RS08625 PF02491 SHS2 domain inserted in FTSA AMQ28_RS08630 PF12327 FtsZ family, C-terminal domain AMQ28_RS08630 PF00091 Tubulin/FtsZ family, GTPase domain AMQ28_RS08635 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMQ28_RS08650 PF17831 Pyruvate dehydrogenase E1 component middle domain AMQ28_RS08650 PF00456 Transketolase, thiamine diphosphate binding domain AMQ28_RS08655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMQ28_RS08655 PF02817 e3 binding domain AMQ28_RS08655 PF00364 Biotin-requiring enzyme AMQ28_RS08660 PF01169 Uncharacterized protein family UPF0016 AMQ28_RS08665 PF03692 Putative zinc- or iron-chelating domain AMQ28_RS08670 PF00571 CBS domain AMQ28_RS08670 PF00478 IMP dehydrogenase / GMP reductase domain AMQ28_RS08675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMQ28_RS08675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMQ28_RS08675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMQ28_RS08675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMQ28_RS08680 PF01243 Pyridoxamine 5'-phosphate oxidase AMQ28_RS08680 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMQ28_RS08685 PF17768 RecJ OB domain AMQ28_RS08685 PF02272 DHHA1 domain AMQ28_RS08685 PF01368 DHH family AMQ28_RS08695 PF03462 PCRF domain AMQ28_RS08695 PF00472 RF-1 domain AMQ28_RS08705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_RS08710 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMQ28_RS08715 PF04452 RNA methyltransferase AMQ28_RS08720 PF00924 Mechanosensitive ion channel AMQ28_RS08730 PF13193 AMP-binding enzyme C-terminal domain AMQ28_RS08730 PF00501 AMP-binding enzyme AMQ28_RS08730 PF16177 Acetyl-coenzyme A synthetase N-terminus AMQ28_RS08735 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS08735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS08745 PF00296 Luciferase-like monooxygenase AMQ28_RS08750 PF03358 NADPH-dependent FMN reductase AMQ28_RS08755 PF00196 Bacterial regulatory proteins, luxR family AMQ28_RS08755 PF00072 Response regulator receiver domain AMQ28_RS08765 PF00672 HAMP domain AMQ28_RS08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS08765 PF00072 Response regulator receiver domain AMQ28_RS08765 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS08765 PF01627 Hpt domain AMQ28_RS08770 PF04341 Protein of unknown function, DUF485 AMQ28_RS08775 PF00474 Sodium:solute symporter family AMQ28_RS08785 PF02028 BCCT, betaine/carnitine/choline family transporter AMQ28_RS08795 PF00905 Penicillin binding protein transpeptidase domain AMQ28_RS08800 PF17760 UvrA interaction domain AMQ28_RS08800 PF17755 UvrA DNA-binding domain AMQ28_RS08810 PF06942 GlpM protein AMQ28_RS08815 PF02581 Thiamine monophosphate synthase AMQ28_RS08815 PF03070 TENA/THI-4/PQQC family AMQ28_RS08815 PF08543 Phosphomethylpyrimidine kinase AMQ28_RS08825 PF07690 Major Facilitator Superfamily AMQ28_RS08840 PF13333 Integrase core domain AMQ28_RS08840 PF00665 Integrase core domain AMQ28_RS08840 PF13276 HTH-like domain AMQ28_RS08845 PF01527 Transposase AMQ28_RS08860 PF00436 Single-strand binding protein family AMQ28_RS08865 PF00589 Phage integrase family AMQ28_RS08865 PF02899 Phage integrase, N-terminal SAM-like domain AMQ28_RS08875 PF00872 Transposase, Mutator family AMQ28_RS08905 PF13276 HTH-like domain AMQ28_RS08905 PF00665 Integrase core domain AMQ28_RS08905 PF13333 Integrase core domain AMQ28_RS08910 PF01381 Helix-turn-helix AMQ28_RS08920 PF00665 Integrase core domain AMQ28_RS08920 PF13333 Integrase core domain AMQ28_RS08920 PF13276 HTH-like domain AMQ28_RS08935 PF13333 Integrase core domain AMQ28_RS08935 PF00665 Integrase core domain AMQ28_RS08935 PF13276 HTH-like domain AMQ28_RS08965 PF01527 Transposase AMQ28_RS08970 PF00665 Integrase core domain AMQ28_RS08970 PF13333 Integrase core domain AMQ28_RS08970 PF13276 HTH-like domain AMQ28_RS08975 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_RS08980 PF00067 Cytochrome P450 AMQ28_RS08985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS08985 PF14759 Reductase C-terminal AMQ28_RS09005 PF13359 DDE superfamily endonuclease AMQ28_RS09005 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS09025 PF00436 Single-strand binding protein family AMQ28_RS09035 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMQ28_RS09035 PF00578 AhpC/TSA family AMQ28_RS09040 PF02678 Pirin AMQ28_RS09040 PF05726 Pirin C-terminal cupin domain AMQ28_RS09045 PF01593 Flavin containing amine oxidoreductase AMQ28_RS09065 PF17763 Glutaminase/Asparaginase C-terminal domain AMQ28_RS09065 PF00710 Asparaginase, N-terminal AMQ28_RS09080 PF13276 HTH-like domain AMQ28_RS09080 PF00665 Integrase core domain AMQ28_RS09080 PF13333 Integrase core domain AMQ28_RS09095 PF02661 Fic/DOC family AMQ28_RS09095 PF13784 Fic/DOC family N-terminal AMQ28_RS09120 PF02705 K+ potassium transporter AMQ28_RS09150 PF00977 Histidine biosynthesis protein AMQ28_RS09155 PF01636 Phosphotransferase enzyme family AMQ28_RS09170 PF00977 Histidine biosynthesis protein AMQ28_RS09180 PF00117 Glutamine amidotransferase class-I AMQ28_RS09185 PF00475 Imidazoleglycerol-phosphate dehydratase AMQ28_RS09225 PF09313 Domain of unknown function (DUF1971) AMQ28_RS09225 PF03848 Tellurite resistance protein TehB AMQ28_RS09255 PF13936 Helix-turn-helix domain AMQ28_RS09255 PF00665 Integrase core domain AMQ28_RS09260 PF02803 Thiolase, C-terminal domain AMQ28_RS09260 PF00108 Thiolase, N-terminal domain AMQ28_RS09265 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_RS09265 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMQ28_RS09265 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMQ28_RS09270 PF01541 GIY-YIG catalytic domain AMQ28_RS09270 PF08459 UvrC Helix-hairpin-helix N-terminal AMQ28_RS09270 PF02151 UvrB/uvrC motif AMQ28_RS09280 PF01066 CDP-alcohol phosphatidyltransferase AMQ28_RS09285 PF04362 Bacterial Fe(2+) trafficking AMQ28_RS09290 PF14698 Argininosuccinate lyase C-terminal AMQ28_RS09290 PF00206 Lyase AMQ28_RS09295 PF07694 5TMR of 5TMR-LYT AMQ28_RS09295 PF06580 Histidine kinase AMQ28_RS09295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS09300 PF00072 Response regulator receiver domain AMQ28_RS09300 PF04397 LytTr DNA-binding domain AMQ28_RS09305 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMQ28_RS09305 PF03900 Porphobilinogen deaminase, C-terminal domain AMQ28_RS09325 PF03061 Thioesterase superfamily AMQ28_RS09330 PF00816 H-NS histone family AMQ28_RS09345 PF00263 Bacterial type II and III secretion system protein AMQ28_RS09345 PF03958 Bacterial type II/III secretion system short domain AMQ28_RS09350 PF12401 Protein of unknown function (DUF2662) AMQ28_RS09350 PF00498 FHA domain AMQ28_RS09355 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_RS09360 PF00425 chorismate binding enzyme AMQ28_RS09360 PF04715 Anthranilate synthase component I, N terminal region AMQ28_RS09385 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS09385 PF03144 Elongation factor Tu domain 2 AMQ28_RS09385 PF03143 Elongation factor Tu C-terminal domain AMQ28_RS09390 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMQ28_RS09395 PF02357 Transcription termination factor nusG AMQ28_RS09395 PF00467 KOW motif AMQ28_RS09400 PF03946 Ribosomal protein L11, N-terminal domain AMQ28_RS09400 PF00298 Ribosomal protein L11, RNA binding domain AMQ28_RS09405 PF00687 Ribosomal protein L1p/L10e family AMQ28_RS09410 PF00466 Ribosomal protein L10 AMQ28_RS09415 PF00542 Ribosomal protein L7/L12 C-terminal domain AMQ28_RS09415 PF16320 Ribosomal protein L7/L12 dimerisation domain AMQ28_RS09420 PF04561 RNA polymerase Rpb2, domain 2 AMQ28_RS09420 PF04560 RNA polymerase Rpb2, domain 7 AMQ28_RS09420 PF10385 RNA polymerase beta subunit external 1 domain AMQ28_RS09420 PF04565 RNA polymerase Rpb2, domain 3 AMQ28_RS09420 PF00562 RNA polymerase Rpb2, domain 6 AMQ28_RS09420 PF04563 RNA polymerase beta subunit AMQ28_RS09425 PF04998 RNA polymerase Rpb1, domain 5 AMQ28_RS09425 PF05000 RNA polymerase Rpb1, domain 4 AMQ28_RS09425 PF04983 RNA polymerase Rpb1, domain 3 AMQ28_RS09425 PF04997 RNA polymerase Rpb1, domain 1 AMQ28_RS09425 PF00623 RNA polymerase Rpb1, domain 2 AMQ28_RS09440 PF00561 alpha/beta hydrolase fold AMQ28_RS09445 PF13726 Na+-H+ antiporter family AMQ28_RS09445 PF03553 Na+/H+ antiporter family AMQ28_RS09450 PF13737 Transposase DDE domain AMQ28_RS09465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS09465 PF00183 Hsp90 protein AMQ28_RS09495 PF01323 DSBA-like thioredoxin domain AMQ28_RS09505 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AMQ28_RS09505 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AMQ28_RS09510 PF00672 HAMP domain AMQ28_RS09510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS09510 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS09515 PF00072 Response regulator receiver domain AMQ28_RS09515 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS09520 PF00575 S1 RNA binding domain AMQ28_RS09520 PF16921 Tex protein YqgF-like domain AMQ28_RS09520 PF17674 HHH domain AMQ28_RS09520 PF09371 Tex-like protein N-terminal domain AMQ28_RS09530 PF00106 short chain dehydrogenase AMQ28_RS09535 PF01053 Cys/Met metabolism PLP-dependent enzyme AMQ28_RS09540 PF00005 ABC transporter AMQ28_RS09540 PF12848 ABC transporter AMQ28_RS09560 PF00873 AcrB/AcrD/AcrF family AMQ28_RS09565 PF02810 SEC-C motif AMQ28_RS09565 PF07517 SecA DEAD-like domain AMQ28_RS09565 PF01043 SecA preprotein cross-linking domain AMQ28_RS09565 PF07516 SecA Wing and Scaffold domain AMQ28_RS09570 PF13276 HTH-like domain AMQ28_RS09570 PF00665 Integrase core domain AMQ28_RS09570 PF13333 Integrase core domain AMQ28_RS09575 PF01527 Transposase AMQ28_RS09595 PF00873 AcrB/AcrD/AcrF family AMQ28_RS09605 PF01545 Cation efflux family AMQ28_RS09620 PF01545 Cation efflux family AMQ28_RS09625 PF13276 HTH-like domain AMQ28_RS09625 PF13333 Integrase core domain AMQ28_RS09625 PF00665 Integrase core domain AMQ28_RS09655 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMQ28_RS09675 PF01795 MraW methylase family AMQ28_RS09685 PF00905 Penicillin binding protein transpeptidase domain AMQ28_RS09685 PF03717 Penicillin-binding Protein dimerisation domain AMQ28_RS09690 PF02875 Mur ligase family, glutamate ligase domain AMQ28_RS09690 PF01225 Mur ligase family, catalytic domain AMQ28_RS09690 PF08245 Mur ligase middle domain AMQ28_RS09695 PF01225 Mur ligase family, catalytic domain AMQ28_RS09695 PF08245 Mur ligase middle domain AMQ28_RS09695 PF02875 Mur ligase family, glutamate ligase domain AMQ28_RS09700 PF00953 Glycosyl transferase family 4 AMQ28_RS09705 PF13847 Methyltransferase domain AMQ28_RS09710 PF17092 Penicillin-binding protein OB-like domain AMQ28_RS09710 PF00905 Penicillin binding protein transpeptidase domain AMQ28_RS09710 PF00912 Transglycosylase AMQ28_RS09715 PF11104 Type IV pilus assembly protein PilM; AMQ28_RS09720 PF05137 Fimbrial assembly protein (PilN) AMQ28_RS09725 PF04350 Pilus assembly protein, PilO AMQ28_RS09735 PF00263 Bacterial type II and III secretion system protein AMQ28_RS09735 PF03958 Bacterial type II/III secretion system short domain AMQ28_RS09735 PF07660 Secretin and TonB N terminus short domain AMQ28_RS09735 PF11741 AMIN domain AMQ28_RS09740 PF01202 Shikimate kinase AMQ28_RS09745 PF01761 3-dehydroquinate synthase AMQ28_RS09755 PF01493 GXGXG motif AMQ28_RS09755 PF00310 Glutamine amidotransferases class-II AMQ28_RS09755 PF01645 Conserved region in glutamate synthase AMQ28_RS09755 PF04898 Glutamate synthase central domain AMQ28_RS09760 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMQ28_RS09760 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS09770 PF04011 LemA family AMQ28_RS09775 PF04536 TPM domain AMQ28_RS09785 PF00114 Pilin (bacterial filament) AMQ28_RS09785 PF07963 Prokaryotic N-terminal methylation motif AMQ28_RS09800 PF04932 O-Antigen ligase AMQ28_RS09800 PF11846 Virulence factor membrane-bound polymerase, C-terminal AMQ28_RS09800 PF15864 Protein glycosylation ligase AMQ28_RS09805 PF00210 Ferritin-like domain AMQ28_RS09810 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_RS09815 PF01042 Endoribonuclease L-PSP AMQ28_RS09820 PF13291 ACT domain AMQ28_RS09820 PF04607 Region found in RelA / SpoT proteins AMQ28_RS09820 PF02824 TGS domain AMQ28_RS09825 PF01192 RNA polymerase Rpb6 AMQ28_RS09830 PF00625 Guanylate kinase AMQ28_RS09835 PF02401 LytB protein AMQ28_RS09840 PF00114 Pilin (bacterial filament) AMQ28_RS09840 PF07963 Prokaryotic N-terminal methylation motif AMQ28_RS09875 PF00886 Ribosomal protein S16 AMQ28_RS09880 PF01782 RimM N-terminal domain AMQ28_RS09880 PF05239 PRC-barrel domain AMQ28_RS09885 PF01746 tRNA (Guanine-1)-methyltransferase AMQ28_RS09890 PF01245 Ribosomal protein L19 AMQ28_RS09895 PF00561 alpha/beta hydrolase fold AMQ28_RS09900 PF00561 alpha/beta hydrolase fold AMQ28_RS09905 PF03280 Proteobacterial lipase chaperone protein AMQ28_RS09910 PF09157 Pseudouridine synthase II TruB, C-terminal AMQ28_RS09910 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMQ28_RS09910 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMQ28_RS09915 PF01925 Sulfite exporter TauE/SafE AMQ28_RS09925 PF00892 EamA-like transporter family AMQ28_RS09930 PF00892 EamA-like transporter family AMQ28_RS09935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMQ28_RS09935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMQ28_RS09940 PF01565 FAD binding domain AMQ28_RS09940 PF02913 FAD linked oxidases, C-terminal domain AMQ28_RS09950 PF07690 Major Facilitator Superfamily AMQ28_RS09955 PF12805 FUSC-like inner membrane protein yccS AMQ28_RS09960 PF00080 Copper/zinc superoxide dismutase (SODC) AMQ28_RS09965 PF01594 AI-2E family transporter AMQ28_RS09970 PF13614 AAA domain AMQ28_RS09980 PF01209 ubiE/COQ5 methyltransferase family AMQ28_RS10000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMQ28_RS10005 PF01197 Ribosomal protein L31 AMQ28_RS10010 PF03109 ABC1 family AMQ28_RS10015 PF01554 MatE AMQ28_RS10025 PF06969 HemN C-terminal domain AMQ28_RS10025 PF04055 Radical SAM superfamily AMQ28_RS10030 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMQ28_RS10030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS10030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS10030 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS10035 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMQ28_RS10035 PF08501 Shikimate dehydrogenase substrate binding domain AMQ28_RS10035 PF01488 Shikimate / quinate 5-dehydrogenase AMQ28_RS10045 PF01218 Coproporphyrinogen III oxidase AMQ28_RS10050 PF00925 GTP cyclohydrolase II AMQ28_RS10055 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMQ28_RS10055 PF02779 Transketolase, pyrimidine binding domain AMQ28_RS10055 PF02780 Transketolase, C-terminal domain AMQ28_RS10060 PF00459 Inositol monophosphatase family AMQ28_RS10065 PF00270 DEAD/DEAH box helicase AMQ28_RS10065 PF00271 Helicase conserved C-terminal domain AMQ28_RS10070 PF00005 ABC transporter AMQ28_RS10075 PF02405 Permease MlaE AMQ28_RS10080 PF02470 MlaD protein AMQ28_RS10085 PF05494 MlaC protein AMQ28_RS10095 PF01544 CorA-like Mg2+ transporter protein AMQ28_RS10100 PF03641 Possible lysine decarboxylase AMQ28_RS10110 PF00156 Phosphoribosyl transferase domain AMQ28_RS10115 PF17191 RecG wedge domain AMQ28_RS10115 PF00271 Helicase conserved C-terminal domain AMQ28_RS10115 PF00270 DEAD/DEAH box helicase AMQ28_RS10125 PF01553 Acyltransferase AMQ28_RS10135 PF00375 Sodium:dicarboxylate symporter family AMQ28_RS10145 PF01926 50S ribosome-binding GTPase AMQ28_RS10150 PF02082 Transcriptional regulator AMQ28_RS10155 PF00175 Oxidoreductase NAD-binding domain AMQ28_RS10155 PF00042 Globin AMQ28_RS10155 PF00970 Oxidoreductase FAD-binding domain AMQ28_RS10160 PF05872 Bacterial protein of unknown function (DUF853) AMQ28_RS10165 PF01053 Cys/Met metabolism PLP-dependent enzyme AMQ28_RS10170 PF00117 Glutamine amidotransferase class-I AMQ28_RS10170 PF00958 GMP synthase C terminal domain AMQ28_RS10170 PF02540 NAD synthase AMQ28_RS10175 PF00338 Ribosomal protein S10p/S20e AMQ28_RS10180 PF00297 Ribosomal protein L3 AMQ28_RS10185 PF00573 Ribosomal protein L4/L1 family AMQ28_RS10190 PF00276 Ribosomal protein L23 AMQ28_RS10195 PF00181 Ribosomal Proteins L2, RNA binding domain AMQ28_RS10195 PF03947 Ribosomal Proteins L2, C-terminal domain AMQ28_RS10200 PF00203 Ribosomal protein S19 AMQ28_RS10205 PF00237 Ribosomal protein L22p/L17e AMQ28_RS10210 PF07650 KH domain AMQ28_RS10210 PF00189 Ribosomal protein S3, C-terminal domain AMQ28_RS10215 PF00252 Ribosomal protein L16p/L10e AMQ28_RS10220 PF00831 Ribosomal L29 protein AMQ28_RS10225 PF00366 Ribosomal protein S17 AMQ28_RS10230 PF00238 Ribosomal protein L14p/L23e AMQ28_RS10235 PF00467 KOW motif AMQ28_RS10235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMQ28_RS10240 PF00673 ribosomal L5P family C-terminus AMQ28_RS10240 PF00281 Ribosomal protein L5 AMQ28_RS10245 PF00253 Ribosomal protein S14p/S29e AMQ28_RS10250 PF00410 Ribosomal protein S8 AMQ28_RS10255 PF00347 Ribosomal protein L6 AMQ28_RS10260 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMQ28_RS10265 PF03719 Ribosomal protein S5, C-terminal domain AMQ28_RS10265 PF00333 Ribosomal protein S5, N-terminal domain AMQ28_RS10270 PF00327 Ribosomal protein L30p/L7e AMQ28_RS10275 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMQ28_RS10280 PF00344 SecY translocase AMQ28_RS10285 PF00444 Ribosomal protein L36 AMQ28_RS10290 PF00416 Ribosomal protein S13/S18 AMQ28_RS10295 PF00411 Ribosomal protein S11 AMQ28_RS10300 PF00163 Ribosomal protein S4/S9 N-terminal domain AMQ28_RS10300 PF01479 S4 domain AMQ28_RS10305 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMQ28_RS10305 PF01000 RNA polymerase Rpb3/RpoA insert domain AMQ28_RS10305 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMQ28_RS10310 PF01196 Ribosomal protein L17 AMQ28_RS10315 PF00743 Flavin-binding monooxygenase-like AMQ28_RS10320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS10320 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS10320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS10325 PF03937 Flavinator of succinate dehydrogenase AMQ28_RS10355 PF09526 Probable metal-binding protein (DUF2387) AMQ28_RS10360 PF01432 Peptidase family M3 AMQ28_RS10365 PF08461 Ribonuclease R winged-helix domain AMQ28_RS10365 PF00773 RNB domain AMQ28_RS10365 PF17876 Cold shock domain AMQ28_RS10365 PF00575 S1 RNA binding domain AMQ28_RS10365 PF08206 Ribonuclease B OB domain AMQ28_RS10400 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMQ28_RS10405 PF03631 Virulence factor BrkB AMQ28_RS10410 PF03358 NADPH-dependent FMN reductase AMQ28_RS10450 PF02130 Uncharacterized protein family UPF0054 AMQ28_RS10455 PF02562 PhoH-like protein AMQ28_RS10460 PF04055 Radical SAM superfamily AMQ28_RS10460 PF00919 Uncharacterized protein family UPF0004 AMQ28_RS10460 PF01938 TRAM domain AMQ28_RS10465 PF01464 Transglycosylase SLT domain AMQ28_RS10465 PF01551 Peptidase family M23 AMQ28_RS10465 PF10145 Phage-related minor tail protein AMQ28_RS10475 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMQ28_RS10475 PF00056 lactate/malate dehydrogenase, NAD binding domain AMQ28_RS10500 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMQ28_RS10505 PF01066 CDP-alcohol phosphatidyltransferase AMQ28_RS10550 PF00753 Metallo-beta-lactamase superfamily AMQ28_RS10550 PF04273 Putative phosphatase (DUF442) AMQ28_RS10560 PF00085 Thioredoxin AMQ28_RS10565 PF03061 Thioesterase superfamily AMQ28_RS10575 PF04461 Protein of unknown function (DUF520) AMQ28_RS10585 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMQ28_RS10585 PF01266 FAD dependent oxidoreductase AMQ28_RS10600 PF04279 Intracellular septation protein A AMQ28_RS10610 PF01062 Bestrophin, RFP-TM, chloride channel AMQ28_RS10615 PF04002 RadC-like JAB domain AMQ28_RS10620 PF02441 Flavoprotein AMQ28_RS10620 PF04127 DNA / pantothenate metabolism flavoprotein AMQ28_RS10625 PF07361 Cytochrome b562 AMQ28_RS10630 PF01207 Dihydrouridine synthase (Dus) AMQ28_RS10635 PF00589 Phage integrase family AMQ28_RS10695 PF02384 N-6 DNA Methylase AMQ28_RS10700 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AMQ28_RS10700 PF00270 DEAD/DEAH box helicase AMQ28_RS10700 PF17191 RecG wedge domain AMQ28_RS10715 PF13333 Integrase core domain AMQ28_RS10715 PF13276 HTH-like domain AMQ28_RS10715 PF00665 Integrase core domain AMQ28_RS10720 PF01420 Type I restriction modification DNA specificity domain AMQ28_RS10745 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMQ28_RS10745 PF18766 SWI2/SNF2 ATPase AMQ28_RS10745 PF11867 Domain of unknown function (DUF3387) AMQ28_RS10770 PF07690 Major Facilitator Superfamily AMQ28_RS10775 PF00892 EamA-like transporter family AMQ28_RS10780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMQ28_RS10780 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMQ28_RS10785 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMQ28_RS10790 PF02233 NAD(P) transhydrogenase beta subunit AMQ28_RS10795 PF00106 short chain dehydrogenase AMQ28_RS10805 PF01261 Xylose isomerase-like TIM barrel AMQ28_RS10810 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMQ28_RS10810 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMQ28_RS10815 PF00378 Enoyl-CoA hydratase/isomerase AMQ28_RS10820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS10820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMQ28_RS10820 PF00072 Response regulator receiver domain AMQ28_RS10820 PF01627 Hpt domain AMQ28_RS10820 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS10820 PF00672 HAMP domain AMQ28_RS10825 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_RS10835 PF05958 tRNA (Uracil-5-)-methyltransferase AMQ28_RS10840 PF04607 Region found in RelA / SpoT proteins AMQ28_RS10840 PF13291 ACT domain AMQ28_RS10840 PF02824 TGS domain AMQ28_RS10845 PF02355 Protein export membrane protein AMQ28_RS10845 PF07549 SecD/SecF GG Motif AMQ28_RS10850 PF13721 SecD export protein N-terminal TM region AMQ28_RS10850 PF07549 SecD/SecF GG Motif AMQ28_RS10850 PF02355 Protein export membrane protein AMQ28_RS10855 PF02699 Preprotein translocase subunit AMQ28_RS10860 PF01702 Queuine tRNA-ribosyltransferase AMQ28_RS10865 PF04011 LemA family AMQ28_RS10875 PF02547 Queuosine biosynthesis protein AMQ28_RS10885 PF00672 HAMP domain AMQ28_RS10885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS10885 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS10885 PF01627 Hpt domain AMQ28_RS10885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMQ28_RS10885 PF00072 Response regulator receiver domain AMQ28_RS10890 PF03710 Glutamate-ammonia ligase adenylyltransferase AMQ28_RS10890 PF08335 GlnD PII-uridylyltransferase AMQ28_RS10895 PF01063 Amino-transferase class IV AMQ28_RS10905 PF01522 Polysaccharide deacetylase AMQ28_RS10910 PF00534 Glycosyl transferases group 1 AMQ28_RS10910 PF08323 Starch synthase catalytic domain AMQ28_RS10920 PF16363 GDP-mannose 4,6 dehydratase AMQ28_RS10925 PF04321 RmlD substrate binding domain AMQ28_RS10930 PF00483 Nucleotidyl transferase AMQ28_RS10935 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMQ28_RS10945 PF13936 Helix-turn-helix domain AMQ28_RS10945 PF00665 Integrase core domain AMQ28_RS10950 PF00535 Glycosyl transferase family 2 AMQ28_RS10970 PF01336 OB-fold nucleic acid binding domain AMQ28_RS10970 PF00152 tRNA synthetases class II (D, K and N) AMQ28_RS10970 PF02938 GAD domain AMQ28_RS10980 PF00593 TonB dependent receptor AMQ28_RS10980 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS11000 PF06146 Phosphate-starvation-inducible E AMQ28_RS11005 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS11005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS11005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS11005 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMQ28_RS11010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMQ28_RS11010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMQ28_RS11010 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMQ28_RS11010 PF02770 Acyl-CoA dehydrogenase, middle domain AMQ28_RS11020 PF00672 HAMP domain AMQ28_RS11020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS11020 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS11025 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS11025 PF00072 Response regulator receiver domain AMQ28_RS11035 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMQ28_RS11050 PF01923 Cobalamin adenosyltransferase AMQ28_RS11055 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS11055 PF00593 TonB dependent receptor AMQ28_RS11060 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMQ28_RS11065 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_RS11085 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMQ28_RS11085 PF12833 Helix-turn-helix domain AMQ28_RS11090 PF00290 Tryptophan synthase alpha chain AMQ28_RS11095 PF01039 Carboxyl transferase domain AMQ28_RS11100 PF08245 Mur ligase middle domain AMQ28_RS11115 PF00753 Metallo-beta-lactamase superfamily AMQ28_RS11120 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMQ28_RS11120 PF00578 AhpC/TSA family AMQ28_RS11125 PF01043 SecA preprotein cross-linking domain AMQ28_RS11125 PF02810 SEC-C motif AMQ28_RS11125 PF07517 SecA DEAD-like domain AMQ28_RS11125 PF07516 SecA Wing and Scaffold domain AMQ28_RS11135 PF01960 ArgJ family AMQ28_RS11140 PF02445 Quinolinate synthetase A protein AMQ28_RS11215 PF04386 Stringent starvation protein B AMQ28_RS11220 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_RS11220 PF00043 Glutathione S-transferase, C-terminal domain AMQ28_RS11225 PF00380 Ribosomal protein S9/S16 AMQ28_RS11230 PF00572 Ribosomal protein L13 AMQ28_RS11235 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMQ28_RS11240 PF00398 Ribosomal RNA adenine dimethylase AMQ28_RS11245 PF00149 Calcineurin-like phosphoesterase AMQ28_RS11270 PF13167 GTP-binding GTPase N-terminal AMQ28_RS11270 PF01926 50S ribosome-binding GTPase AMQ28_RS11270 PF16360 GTP-binding GTPase Middle Region AMQ28_RS11280 PF13091 PLD-like domain AMQ28_RS11285 PF00149 Calcineurin-like phosphoesterase AMQ28_RS11295 PF00083 Sugar (and other) transporter AMQ28_RS11295 PF07690 Major Facilitator Superfamily AMQ28_RS11300 PF03006 Haemolysin-III related AMQ28_RS11310 PF07715 TonB-dependent Receptor Plug Domain AMQ28_RS11310 PF00593 TonB dependent receptor AMQ28_RS11315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_RS11320 PF03547 Membrane transport protein AMQ28_RS11340 PF01571 Aminomethyltransferase folate-binding domain AMQ28_RS11345 PF00330 Aconitase family (aconitate hydratase) AMQ28_RS11345 PF00694 Aconitase C-terminal domain AMQ28_RS11360 PF07690 Major Facilitator Superfamily AMQ28_RS11365 PF00083 Sugar (and other) transporter AMQ28_RS11370 PF00849 RNA pseudouridylate synthase AMQ28_RS11385 PF08274 PhnA Zinc-Ribbon AMQ28_RS11385 PF03831 PhnA domain AMQ28_RS11395 PF03070 TENA/THI-4/PQQC family AMQ28_RS11395 PF08543 Phosphomethylpyrimidine kinase AMQ28_RS11395 PF02581 Thiamine monophosphate synthase AMQ28_RS11400 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_RS11405 PF03653 Uncharacterised protein family (UPF0093) AMQ28_RS11410 PF00109 Beta-ketoacyl synthase, N-terminal domain AMQ28_RS11410 PF02801 Beta-ketoacyl synthase, C-terminal domain AMQ28_RS11420 PF00164 Ribosomal protein S12/S23 AMQ28_RS11425 PF00177 Ribosomal protein S7p/S5e AMQ28_RS11430 PF14492 Elongation Factor G, domain II AMQ28_RS11430 PF03764 Elongation factor G, domain IV AMQ28_RS11430 PF03144 Elongation factor Tu domain 2 AMQ28_RS11430 PF00679 Elongation factor G C-terminus AMQ28_RS11430 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS11435 PF03144 Elongation factor Tu domain 2 AMQ28_RS11435 PF03143 Elongation factor Tu C-terminal domain AMQ28_RS11435 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS11445 PF00583 Acetyltransferase (GNAT) family AMQ28_RS11450 PF04377 Arginine-tRNA-protein transferase, C terminus AMQ28_RS11450 PF04376 Arginine-tRNA-protein transferase, N terminus AMQ28_RS11455 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMQ28_RS11460 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS11465 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMQ28_RS11465 PF17854 FtsK alpha domain AMQ28_RS11465 PF09397 Ftsk gamma domain AMQ28_RS11465 PF01580 FtsK/SpoIIIE family AMQ28_RS11480 PF03776 Septum formation topological specificity factor MinE AMQ28_RS11485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMQ28_RS11490 PF03775 Septum formation inhibitor MinC, C-terminal domain AMQ28_RS11500 PF01553 Acyltransferase AMQ28_RS11505 PF13488 Glycine zipper AMQ28_RS11505 PF00691 OmpA family AMQ28_RS11510 PF00580 UvrD/REP helicase N-terminal domain AMQ28_RS11510 PF13361 UvrD-like helicase C-terminal domain AMQ28_RS11515 PF00692 dUTPase AMQ28_RS11520 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMQ28_RS11520 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMQ28_RS11520 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMQ28_RS11520 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMQ28_RS11525 PF00696 Amino acid kinase family AMQ28_RS11530 PF13230 Glutamine amidotransferases class-II AMQ28_RS11535 PF01814 Hemerythrin HHE cation binding domain AMQ28_RS11545 PF03658 RnfH family Ubiquitin AMQ28_RS11550 PF04355 SmpA / OmlA family AMQ28_RS11555 PF01475 Ferric uptake regulator family AMQ28_RS11560 PF00437 Type II/IV secretion system protein AMQ28_RS11565 PF00437 Type II/IV secretion system protein AMQ28_RS11570 PF01168 Alanine racemase, N-terminal domain AMQ28_RS11580 PF00149 Calcineurin-like phosphoesterase AMQ28_RS11580 PF12320 Type 5 capsule protein repressor C-terminal domain AMQ28_RS11585 PF00563 EAL domain AMQ28_RS11585 PF01590 GAF domain AMQ28_RS11585 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS11585 PF00360 Phytochrome region AMQ28_RS11600 PF13359 DDE superfamily endonuclease AMQ28_RS11600 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS11605 PF03783 Curli production assembly/transport component CsgG AMQ28_RS11615 PF05643 Putative bacterial lipoprotein (DUF799) AMQ28_RS11620 PF01588 Putative tRNA binding domain AMQ28_RS11620 PF09334 tRNA synthetases class I (M) AMQ28_RS11640 PF05992 SbmA/BacA-like family AMQ28_RS11655 PF03466 LysR substrate binding domain AMQ28_RS11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMQ28_RS11680 PF02934 GatB/GatE catalytic domain AMQ28_RS11680 PF02637 GatB domain AMQ28_RS11685 PF01425 Amidase AMQ28_RS11690 PF02686 Glu-tRNAGln amidotransferase C subunit AMQ28_RS11700 PF04085 rod shape-determining protein MreC AMQ28_RS11710 PF02545 Maf-like protein AMQ28_RS11715 PF00575 S1 RNA binding domain AMQ28_RS11715 PF10150 Ribonuclease E/G family AMQ28_RS11720 PF06974 Protein of unknown function (DUF1298) AMQ28_RS11720 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMQ28_RS11725 PF01507 Phosphoadenosine phosphosulfate reductase family AMQ28_RS11750 PF00465 Iron-containing alcohol dehydrogenase AMQ28_RS11760 PF00083 Sugar (and other) transporter AMQ28_RS11780 PF00324 Amino acid permease AMQ28_RS11785 PF04303 PrpF protein AMQ28_RS11790 PF00348 Polyprenyl synthetase AMQ28_RS11795 PF00474 Sodium:solute symporter family AMQ28_RS11800 PF01145 SPFH domain / Band 7 family AMQ28_RS11810 PF01734 Patatin-like phospholipase AMQ28_RS11830 PF08019 Phosphoethanolamine transferase EptA/EptB AMQ28_RS11830 PF00884 Sulfatase AMQ28_RS11835 PF00072 Response regulator receiver domain AMQ28_RS11835 PF00486 Transcriptional regulatory protein, C terminal AMQ28_RS11840 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS11840 PF08521 Two-component sensor kinase N-terminal AMQ28_RS11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS11850 PF00909 Ammonium Transporter Family AMQ28_RS11855 PF00005 ABC transporter AMQ28_RS11860 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS11865 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS11870 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMQ28_RS11875 PF04239 Protein of unknown function (DUF421) AMQ28_RS11900 PF02463 RecF/RecN/SMC N terminal domain AMQ28_RS11905 PF10458 Valyl tRNA synthetase tRNA binding arm AMQ28_RS11905 PF00133 tRNA synthetases class I (I, L, M and V) AMQ28_RS11905 PF08264 Anticodon-binding domain of tRNA AMQ28_RS11915 PF00106 short chain dehydrogenase AMQ28_RS11920 PF01906 Putative heavy-metal-binding AMQ28_RS11925 PF01906 Putative heavy-metal-binding AMQ28_RS11930 PF02321 Outer membrane efflux protein AMQ28_RS11935 PF00873 AcrB/AcrD/AcrF family AMQ28_RS11940 PF00529 HlyD membrane-fusion protein of T1SS AMQ28_RS11940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMQ28_RS11945 PF01569 PAP2 superfamily AMQ28_RS11955 PF00348 Polyprenyl synthetase AMQ28_RS11960 PF00829 Ribosomal prokaryotic L21 protein AMQ28_RS11965 PF01016 Ribosomal L27 protein AMQ28_RS11980 PF03548 Outer membrane lipoprotein carrier protein LolA AMQ28_RS11990 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMQ28_RS11990 PF02403 Seryl-tRNA synthetase N-terminal domain AMQ28_RS11995 PF10414 Sirohaem synthase dimerisation region AMQ28_RS11995 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMQ28_RS11995 PF14824 Sirohaem biosynthesis protein central AMQ28_RS12000 PF00588 SpoU rRNA Methylase family AMQ28_RS12005 PF13520 Amino acid permease AMQ28_RS12010 PF00465 Iron-containing alcohol dehydrogenase AMQ28_RS12020 PF03099 Biotin/lipoate A/B protein ligase family AMQ28_RS12025 PF04359 Protein of unknown function (DUF493) AMQ28_RS12030 PF04545 Sigma-70, region 4 AMQ28_RS12030 PF04546 Sigma-70, non-essential region AMQ28_RS12030 PF00140 Sigma-70 factor, region 1.2 AMQ28_RS12030 PF04539 Sigma-70 region 3 AMQ28_RS12030 PF03979 Sigma-70 factor, region 1.1 AMQ28_RS12030 PF04542 Sigma-70 region 2 AMQ28_RS12045 PF09335 SNARE associated Golgi protein AMQ28_RS12050 PF17773 UPF0176 acylphosphatase like domain AMQ28_RS12050 PF00581 Rhodanese-like domain AMQ28_RS12060 PF02261 Aspartate decarboxylase AMQ28_RS12065 PF01195 Peptidyl-tRNA hydrolase AMQ28_RS12070 PF01386 Ribosomal L25p family AMQ28_RS12075 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMQ28_RS12075 PF14572 Phosphoribosyl synthetase-associated domain AMQ28_RS12100 PF00288 GHMP kinases N terminal domain AMQ28_RS12100 PF08544 GHMP kinases C terminal AMQ28_RS12105 PF03550 Outer membrane lipoprotein LolB AMQ28_RS12115 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMQ28_RS12115 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMQ28_RS12115 PF01488 Shikimate / quinate 5-dehydrogenase AMQ28_RS12120 PF01807 CHC2 zinc finger AMQ28_RS12120 PF08278 DNA primase DnaG DnaB-binding AMQ28_RS12120 PF10410 DnaB-helicase binding domain of primase AMQ28_RS12120 PF08275 DNA primase catalytic core, N-terminal domain AMQ28_RS12125 PF13525 Outer membrane lipoprotein AMQ28_RS12130 PF00849 RNA pseudouridylate synthase AMQ28_RS12130 PF01479 S4 domain AMQ28_RS12135 PF02578 Multi-copper polyphenol oxidoreductase laccase AMQ28_RS12140 PF03358 NADPH-dependent FMN reductase AMQ28_RS12145 PF01668 SmpB protein AMQ28_RS12150 PF01467 Cytidylyltransferase-like AMQ28_RS12155 PF00037 4Fe-4S binding domain AMQ28_RS12180 PF02540 NAD synthase AMQ28_RS12180 PF00795 Carbon-nitrogen hydrolase AMQ28_RS12185 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) AMQ28_RS12185 PF04717 Type VI secretion system, phage-baseplate injector AMQ28_RS12185 PF13296 Putative type VI secretion system Rhs element Vgr AMQ28_RS12210 PF00743 Flavin-binding monooxygenase-like AMQ28_RS12215 PF00285 Citrate synthase, C-terminal domain AMQ28_RS12220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMQ28_RS12225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMQ28_RS12230 PF00890 FAD binding domain AMQ28_RS12230 PF02910 Fumarate reductase flavoprotein C-term AMQ28_RS12235 PF13085 2Fe-2S iron-sulfur cluster binding domain AMQ28_RS12245 PF16078 2-oxoglutarate dehydrogenase N-terminus AMQ28_RS12245 PF00676 Dehydrogenase E1 component AMQ28_RS12245 PF16870 2-oxoglutarate dehydrogenase C-terminal AMQ28_RS12245 PF02779 Transketolase, pyrimidine binding domain AMQ28_RS12250 PF02817 e3 binding domain AMQ28_RS12250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMQ28_RS12250 PF00364 Biotin-requiring enzyme AMQ28_RS12255 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS12255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMQ28_RS12260 PF08442 ATP-grasp domain AMQ28_RS12260 PF00549 CoA-ligase AMQ28_RS12265 PF00549 CoA-ligase AMQ28_RS12265 PF02629 CoA binding domain AMQ28_RS12270 PF01507 Phosphoadenosine phosphosulfate reductase family AMQ28_RS12275 PF00009 Elongation factor Tu GTP binding domain AMQ28_RS12285 PF00550 Phosphopantetheine attachment site AMQ28_RS12285 PF16197 Ketoacyl-synthetase C-terminal extension AMQ28_RS12285 PF00109 Beta-ketoacyl synthase, N-terminal domain AMQ28_RS12285 PF02801 Beta-ketoacyl synthase, C-terminal domain AMQ28_RS12285 PF08659 KR domain AMQ28_RS12285 PF00698 Acyl transferase domain AMQ28_RS12285 PF08240 Alcohol dehydrogenase GroES-like domain AMQ28_RS12285 PF00107 Zinc-binding dehydrogenase AMQ28_RS12285 PF14765 Polyketide synthase dehydratase AMQ28_RS12300 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMQ28_RS12300 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMQ28_RS12315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMQ28_RS12315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMQ28_RS12320 PF08220 DeoR-like helix-turn-helix domain AMQ28_RS12320 PF00455 DeoR C terminal sensor domain AMQ28_RS12325 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMQ28_RS12325 PF01266 FAD dependent oxidoreductase AMQ28_RS12330 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AMQ28_RS12330 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AMQ28_RS12335 PF00781 Diacylglycerol kinase catalytic domain AMQ28_RS12345 PF00166 Chaperonin 10 Kd subunit AMQ28_RS12350 PF00118 TCP-1/cpn60 chaperonin family AMQ28_RS12360 PF04170 NlpE N-terminal domain AMQ28_RS12360 PF17185 NlpE C-terminal OB domain AMQ28_RS12385 PF00905 Penicillin binding protein transpeptidase domain AMQ28_RS12385 PF03717 Penicillin-binding Protein dimerisation domain AMQ28_RS12400 PF05191 Adenylate kinase, active site lid AMQ28_RS12410 PF00633 Helix-hairpin-helix motif AMQ28_RS12410 PF00730 HhH-GPD superfamily base excision DNA repair protein AMQ28_RS12410 PF10576 Iron-sulfur binding domain of endonuclease III AMQ28_RS12415 PF04060 Putative Fe-S cluster AMQ28_RS12420 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMQ28_RS12420 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMQ28_RS12430 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMQ28_RS12435 PF02590 Predicted SPOUT methyltransferase AMQ28_RS12450 PF04389 Peptidase family M28 AMQ28_RS12455 PF05362 Lon protease (S16) C-terminal proteolytic domain AMQ28_RS12455 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_RS12455 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMQ28_RS12460 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMQ28_RS12465 PF13411 MerR HTH family regulatory protein AMQ28_RS12480 PF03949 Malic enzyme, NAD binding domain AMQ28_RS12480 PF00390 Malic enzyme, N-terminal domain AMQ28_RS12490 PF01867 CRISPR associated protein Cas1 AMQ28_RS12515 PF00557 Metallopeptidase family M24 AMQ28_RS12515 PF05195 Aminopeptidase P, N-terminal domain AMQ28_RS12520 PF01494 FAD binding domain AMQ28_RS12525 PF01494 FAD binding domain AMQ28_RS12535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMQ28_RS12540 PF02021 Uncharacterised protein family UPF0102 AMQ28_RS12545 PF04972 BON domain AMQ28_RS12550 PF07859 alpha/beta hydrolase fold AMQ28_RS12555 PF00293 NUDIX domain AMQ28_RS12555 PF09297 NADH pyrophosphatase zinc ribbon domain AMQ28_RS12565 PF00929 Exonuclease AMQ28_RS12570 PF01476 LysM domain AMQ28_RS12570 PF01464 Transglycosylase SLT domain AMQ28_RS12575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMQ28_RS12580 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS12585 PF12911 N-terminal TM domain of oligopeptide transport permease C AMQ28_RS12585 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS12590 PF00005 ABC transporter AMQ28_RS12590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMQ28_RS12595 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS12595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_RS12615 PF00324 Amino acid permease AMQ28_RS12630 PF00929 Exonuclease AMQ28_RS12635 PF01979 Amidohydrolase family AMQ28_RS12640 PF00563 EAL domain AMQ28_RS12640 PF01590 GAF domain AMQ28_RS12640 PF00990 Diguanylate cyclase, GGDEF domain AMQ28_RS12640 PF00360 Phytochrome region AMQ28_RS12645 PF00764 Arginosuccinate synthase AMQ28_RS12650 PF02652 L-lactate permease AMQ28_RS12655 PF00392 Bacterial regulatory proteins, gntR family AMQ28_RS12655 PF07729 FCD domain AMQ28_RS12660 PF01070 FMN-dependent dehydrogenase AMQ28_RS12665 PF09330 D-lactate dehydrogenase, membrane binding AMQ28_RS12665 PF01565 FAD binding domain AMQ28_RS12670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMQ28_RS12670 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS12680 PF13737 Transposase DDE domain AMQ28_RS12685 PF00866 Ring hydroxylating beta subunit AMQ28_RS12690 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMQ28_RS12690 PF00355 Rieske [2Fe-2S] domain AMQ28_RS12695 PF17954 Quercetinase C-terminal cupin domain AMQ28_RS12695 PF02678 Pirin AMQ28_RS12705 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMQ28_RS12710 PF05675 Protein of unknown function (DUF817) AMQ28_RS12730 PF01227 GTP cyclohydrolase I AMQ28_RS12735 PF01713 Smr domain AMQ28_RS12740 PF00218 Indole-3-glycerol phosphate synthase AMQ28_RS12745 PF02885 Glycosyl transferase family, helical bundle domain AMQ28_RS12745 PF00591 Glycosyl transferase family, a/b domain AMQ28_RS12750 PF00117 Glutamine amidotransferase class-I AMQ28_RS12760 PF00120 Glutamine synthetase, catalytic domain AMQ28_RS12760 PF03951 Glutamine synthetase, beta-Grasp domain AMQ28_RS12765 PF00171 Aldehyde dehydrogenase family AMQ28_RS12770 PF04345 Chorismate lyase AMQ28_RS12775 PF01040 UbiA prenyltransferase family AMQ28_RS12790 PF00593 TonB dependent receptor AMQ28_RS12815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMQ28_RS12815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMQ28_RS12820 PF01784 NIF3 (NGG1p interacting factor 3) AMQ28_RS12825 PF13180 PDZ domain AMQ28_RS12825 PF17820 PDZ domain AMQ28_RS12845 PF00155 Aminotransferase class I and II AMQ28_RS12850 PF00557 Metallopeptidase family M24 AMQ28_RS12855 PF00318 Ribosomal protein S2 AMQ28_RS12860 PF00889 Elongation factor TS AMQ28_RS12875 PF03330 Lytic transglycolase AMQ28_RS12875 PF05036 Sporulation related domain AMQ28_RS12880 PF13406 Transglycosylase SLT domain AMQ28_RS12890 PF14489 QueF-like protein AMQ28_RS12890 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMQ28_RS12895 PF01061 ABC-2 type transporter AMQ28_RS12900 PF00005 ABC transporter AMQ28_RS12915 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS12915 PF13359 DDE superfamily endonuclease AMQ28_RS12920 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS12920 PF13359 DDE superfamily endonuclease AMQ28_RS12945 PF00464 Serine hydroxymethyltransferase AMQ28_RS12950 PF01272 Transcription elongation factor, GreA/GreB, C-term AMQ28_RS12950 PF14760 Rnk N-terminus AMQ28_RS12955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMQ28_RS12960 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS12965 PF00768 D-alanyl-D-alanine carboxypeptidase AMQ28_RS12965 PF07943 Penicillin-binding protein 5, C-terminal domain AMQ28_RS12975 PF03971 Monomeric isocitrate dehydrogenase AMQ28_RS12980 PF00849 RNA pseudouridylate synthase AMQ28_RS13065 PF00717 Peptidase S24-like AMQ28_RS13065 PF01381 Helix-turn-helix AMQ28_RS13085 PF01695 IstB-like ATP binding protein AMQ28_RS13090 PF02498 BRO family, N-terminal domain AMQ28_RS13090 PF10548 P22AR C-terminal domain AMQ28_RS13145 PF06074 Protein of unknown function (DUF935) AMQ28_RS13305 PF00589 Phage integrase family AMQ28_RS13305 PF13356 Arm DNA-binding domain AMQ28_RS13310 PF00180 Isocitrate/isopropylmalate dehydrogenase AMQ28_RS13325 PF00155 Aminotransferase class I and II AMQ28_RS13330 PF01641 SelR domain AMQ28_RS13335 PF00255 Glutathione peroxidase AMQ28_RS13340 PF00155 Aminotransferase class I and II AMQ28_RS13345 PF01966 HD domain AMQ28_RS13345 PF08335 GlnD PII-uridylyltransferase AMQ28_RS13345 PF01909 Nucleotidyltransferase domain AMQ28_RS13350 PF02222 ATP-grasp domain AMQ28_RS13355 PF05437 Branched-chain amino acid transport protein (AzlD) AMQ28_RS13360 PF03591 AzlC protein AMQ28_RS13370 PF13545 Crp-like helix-turn-helix domain AMQ28_RS13370 PF00027 Cyclic nucleotide-binding domain AMQ28_RS13380 PF01926 50S ribosome-binding GTPase AMQ28_RS13380 PF06071 Protein of unknown function (DUF933) AMQ28_RS13390 PF01037 Lrp/AsnC ligand binding domain AMQ28_RS13395 PF01709 Transcriptional regulator AMQ28_RS13400 PF01553 Acyltransferase AMQ28_RS13435 PF06968 Biotin and Thiamin Synthesis associated domain AMQ28_RS13435 PF04055 Radical SAM superfamily AMQ28_RS13440 PF08331 Domain of unknown function (DUF1730) AMQ28_RS13445 PF01256 Carbohydrate kinase AMQ28_RS13445 PF03853 YjeF-related protein N-terminus AMQ28_RS13455 PF02075 Crossover junction endodeoxyribonuclease RuvC AMQ28_RS13475 PF08803 Putative mono-oxygenase ydhR AMQ28_RS13480 PF02772 S-adenosylmethionine synthetase, central domain AMQ28_RS13480 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMQ28_RS13480 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMQ28_RS13485 PF00456 Transketolase, thiamine diphosphate binding domain AMQ28_RS13485 PF02779 Transketolase, pyrimidine binding domain AMQ28_RS13485 PF02780 Transketolase, C-terminal domain AMQ28_RS13500 PF04264 YceI-like domain AMQ28_RS13505 PF01810 LysE type translocator AMQ28_RS13510 PF02540 NAD synthase AMQ28_RS13510 PF00117 Glutamine amidotransferase class-I AMQ28_RS13510 PF00958 GMP synthase C terminal domain AMQ28_RS13515 PF00171 Aldehyde dehydrogenase family AMQ28_RS13530 PF00106 short chain dehydrogenase AMQ28_RS13535 PF00005 ABC transporter AMQ28_RS13545 PF07690 Major Facilitator Superfamily AMQ28_RS13550 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS13550 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMQ28_RS13550 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_RS13550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMQ28_RS13550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMQ28_RS13555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMQ28_RS13555 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMQ28_RS13555 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMQ28_RS13555 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_RS13555 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMQ28_RS13560 PF04324 BFD-like [2Fe-2S] binding domain AMQ28_RS13560 PF00384 Molybdopterin oxidoreductase AMQ28_RS13560 PF01568 Molydopterin dinucleotide binding domain AMQ28_RS13560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_RS13565 PF12804 MobA-like NTP transferase domain AMQ28_RS13570 PF04055 Radical SAM superfamily AMQ28_RS13570 PF06463 Molybdenum Cofactor Synthesis C AMQ28_RS13580 PF02391 MoaE protein AMQ28_RS13595 PF14497 Glutathione S-transferase, C-terminal domain AMQ28_RS13595 PF02798 Glutathione S-transferase, N-terminal domain AMQ28_RS13620 PF09190 DALR domain AMQ28_RS13620 PF01406 tRNA synthetases class I (C) catalytic domain AMQ28_RS13625 PF00571 CBS domain AMQ28_RS13625 PF01380 SIS domain AMQ28_RS13640 PF03968 OstA-like protein AMQ28_RS13645 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMQ28_RS13645 PF00005 ABC transporter AMQ28_RS13655 PF13359 DDE superfamily endonuclease AMQ28_RS13655 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS13660 PF13359 DDE superfamily endonuclease AMQ28_RS13660 PF13613 Helix-turn-helix of DDE superfamily endonuclease AMQ28_RS13665 PF02321 Outer membrane efflux protein AMQ28_RS13670 PF00664 ABC transporter transmembrane region AMQ28_RS13670 PF00005 ABC transporter AMQ28_RS13670 PF03412 Peptidase C39 family AMQ28_RS13675 PF13533 Biotin-lipoyl like AMQ28_RS13680 PF01205 Uncharacterized protein family UPF0029 AMQ28_RS13690 PF00582 Universal stress protein family AMQ28_RS13695 PF01596 O-methyltransferase AMQ28_RS13705 PF11953 Domain of unknown function (DUF3470) AMQ28_RS13705 PF00037 4Fe-4S binding domain AMQ28_RS13710 PF01624 MutS domain I AMQ28_RS13710 PF05192 MutS domain III AMQ28_RS13710 PF05190 MutS family domain IV AMQ28_RS13710 PF00488 MutS domain V AMQ28_RS13710 PF05188 MutS domain II AMQ28_RS13725 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS13730 PF00588 SpoU rRNA Methylase family AMQ28_RS13735 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMQ28_RS13735 PF01336 OB-fold nucleic acid binding domain AMQ28_RS13735 PF02811 PHP domain AMQ28_RS13735 PF14579 Helix-hairpin-helix motif AMQ28_RS13735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMQ28_RS13740 PF00528 Binding-protein-dependent transport system inner membrane component AMQ28_RS13745 PF00005 ABC transporter AMQ28_RS13745 PF09383 NIL domain AMQ28_RS13750 PF03180 NLPA lipoprotein AMQ28_RS13755 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMQ28_RS13755 PF02843 Phosphoribosylglycinamide synthetase, C domain AMQ28_RS13755 PF02844 Phosphoribosylglycinamide synthetase, N domain AMQ28_RS13760 PF02142 MGS-like domain AMQ28_RS13760 PF01808 AICARFT/IMPCHase bienzyme AMQ28_RS13765 PF02954 Bacterial regulatory protein, Fis family AMQ28_RS13790 PF13932 GidA associated domain AMQ28_RS13790 PF01134 Glucose inhibited division protein A AMQ28_RS13800 PF00072 Response regulator receiver domain AMQ28_RS13800 PF02954 Bacterial regulatory protein, Fis family AMQ28_RS13800 PF00158 Sigma-54 interaction domain AMQ28_RS13805 PF00512 His Kinase A (phospho-acceptor) domain AMQ28_RS13805 PF00989 PAS fold AMQ28_RS13805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMQ28_RS13810 PF18693 TRAM domain AMQ28_RS13810 PF00919 Uncharacterized protein family UPF0004 AMQ28_RS13810 PF04055 Radical SAM superfamily AMQ28_RS13815 PF00696 Amino acid kinase family AMQ28_RS13820 PF01765 Ribosome recycling factor AMQ28_RS13825 PF01255 Putative undecaprenyl diphosphate synthase AMQ28_RS13835 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMQ28_RS13835 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMQ28_RS13835 PF13288 DXP reductoisomerase C-terminal domain AMQ28_RS13840 PF17820 PDZ domain AMQ28_RS13840 PF02163 Peptidase family M50 AMQ28_RS13840 PF13180 PDZ domain AMQ28_RS13845 PF01103 Surface antigen AMQ28_RS13845 PF07244 Surface antigen variable number repeat AMQ28_RS13855 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS13855 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMQ28_RS13860 PF07977 FabA-like domain AMQ28_RS13865 PF00132 Bacterial transferase hexapeptide (six repeats) AMQ28_RS13865 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMQ28_RS13875 PF02631 RecX family AMQ28_RS13880 PF00154 recA bacterial DNA recombination protein AMQ28_RS13885 PF01479 S4 domain AMQ28_RS13890 PF13419 Haloacid dehalogenase-like hydrolase AMQ28_RS13895 PF00459 Inositol monophosphatase family AMQ28_RS13905 PF01649 Ribosomal protein S20 AMQ28_RS13910 PF13460 NAD(P)H-binding AMQ28_RS13915 PF03737 Aldolase/RraA AMQ28_RS13925 PF08007 Cupin superfamily protein AMQ28_RS13930 PF02545 Maf-like protein AMQ28_RS13940 PF00162 Phosphoglycerate kinase AMQ28_RS13950 PF01116 Fructose-bisphosphate aldolase class-II AMQ28_RS13960 PF00881 Nitroreductase family AMQ28_RS13965 PF00149 Calcineurin-like phosphoesterase AMQ28_RS13970 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMQ28_RS13975 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMQ28_RS13975 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMQ28_RS14025 PF05958 tRNA (Uracil-5-)-methyltransferase AMQ28_RS14035 PF03461 TRCF domain AMQ28_RS14035 PF17757 UvrB interaction domain AMQ28_RS14035 PF00271 Helicase conserved C-terminal domain AMQ28_RS14035 PF00270 DEAD/DEAH box helicase AMQ28_RS14035 PF02559 CarD-like/TRCF domain AMQ28_RS14045 PF00211 Adenylate and Guanylate cyclase catalytic domain AMQ28_RS14050 PF00111 2Fe-2S iron-sulfur cluster binding domain AMQ28_RS14055 PF00012 Hsp70 protein AMQ28_RS14060 PF07743 HSCB C-terminal oligomerisation domain AMQ28_RS14060 PF00226 DnaJ domain AMQ28_RS14065 PF01521 Iron-sulphur cluster biosynthesis AMQ28_RS14070 PF01592 NifU-like N terminal domain AMQ28_RS14075 PF00266 Aminotransferase class-V AMQ28_RS14080 PF02082 Transcriptional regulator AMQ28_RS14095 PF00216 Bacterial DNA-binding protein AMQ28_RS14100 PF09312 SurA N-terminal domain AMQ28_RS14130 PF00294 pfkB family carbohydrate kinase AMQ28_RS14140 PF00675 Insulinase (Peptidase family M16) AMQ28_RS14140 PF08367 Peptidase M16C associated AMQ28_RS14140 PF05193 Peptidase M16 inactive domain AMQ28_RS14145 PF02253 Phospholipase A1 AMQ28_RS14150 PF02386 Cation transport protein AMQ28_RS14155 PF02254 TrkA-N domain AMQ28_RS14155 PF02080 TrkA-C domain AMQ28_RS14165 PF00585 C-terminal regulatory domain of Threonine dehydratase AMQ28_RS14165 PF00291 Pyridoxal-phosphate dependent enzyme AMQ28_RS14170 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMQ28_RS14180 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMQ28_RS14180 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMQ28_RS14190 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMQ28_RS14195 PF17871 AAA lid domain AMQ28_RS14195 PF00004 ATPase family associated with various cellular activities (AAA) AMQ28_RS14195 PF07724 AAA domain (Cdc48 subfamily) AMQ28_RS14195 PF02861 Clp amino terminal domain, pathogenicity island component AMQ28_RS14195 PF10431 C-terminal, D2-small domain, of ClpB protein AMQ28_RS14200 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMQ28_RS14205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMQ28_RS14205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMQ28_RS14210 PF00440 Bacterial regulatory proteins, tetR family AMQ28_RS14220 PF00285 Citrate synthase, C-terminal domain AMQ28_RS14235 PF06418 CTP synthase N-terminus AMQ28_RS14235 PF00117 Glutamine amidotransferase class-I AMQ28_RS14240 PF00793 DAHP synthetase I family AMQ28_RS14245 PF00113 Enolase, C-terminal TIM barrel domain AMQ28_RS14245 PF03952 Enolase, N-terminal domain AMQ28_RS14250 PF04977 Septum formation initiator AMQ28_RS14255 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMQ28_RS14260 PF01098 Cell cycle protein