AMQ28_RS00045 SM01324 AMQ28_RS00045 AMQ28_RS00075 SM00493 AMQ28_RS00075 AMQ28_RS00080 SM00341 Helicase and RNase D C-terminal AMQ28_RS00080 SM00474 3'-5' exonuclease AMQ28_RS00095 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS00105 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_RS00140 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS00140 SM00962 SRP54-type protein, GTPase domain AMQ28_RS00140 SM00963 SRP54-type protein, helical bundle domain AMQ28_RS00285 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS00320 SM00855 Phosphoglycerate mutase family AMQ28_RS00400 SM00318 Staphylococcal nuclease homologues AMQ28_RS00420 SM00855 Phosphoglycerate mutase family AMQ28_RS00440 SM00155 Phospholipase D. Active site motifs. AMQ28_RS00445 SM00829 Enoylreductase AMQ28_RS00480 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS00490 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS00505 SM01034 Sensors of blue-light using FAD AMQ28_RS00555 SM00563 Phosphate acyltransferases AMQ28_RS00585 SM00882 Coenzyme A transferase AMQ28_RS00590 SM00882 Coenzyme A transferase AMQ28_RS00630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMQ28_RS00655 SM00347 helix_turn_helix multiple antibiotic resistance protein AMQ28_RS00670 SM00882 Coenzyme A transferase AMQ28_RS00675 SM00882 Coenzyme A transferase AMQ28_RS00685 SM00878 Biotin carboxylase C-terminal domain AMQ28_RS00685 SM01209 AMQ28_RS00685 AMQ28_RS00755 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_RS00765 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMQ28_RS00820 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_RS00880 SM00903 Flavin reductase like domain AMQ28_RS00885 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_RS00895 SM00387 Histidine kinase-like ATPases AMQ28_RS00895 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS00900 SM00448 cheY-homologous receiver domain AMQ28_RS00900 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS00910 SM00095 Transthyretin AMQ28_RS00920 SM00829 Enoylreductase AMQ28_RS00960 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS01000 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS01030 SM00849 Metallo-beta-lactamase superfamily AMQ28_RS01075 SM00878 Biotin carboxylase C-terminal domain AMQ28_RS01225 SM00357 Cold shock protein domain AMQ28_RS01280 SM00905 Dihydroneopterin aldolase AMQ28_RS01300 SM00822 AMQ28_RS01300 AMQ28_RS01305 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS01315 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_RS01330 SM00937 AMQ28_RS01330 AMQ28_RS01425 SM01005 Alanine racemase, C-terminal domain AMQ28_RS01435 SM00460 Transglutaminase/protease-like homologues AMQ28_RS01475 SM00226 Low molecular weight phosphatase family AMQ28_RS01485 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS01505 SM00822 AMQ28_RS01505 AMQ28_RS01595 SM01091 Transporter associated domain AMQ28_RS01600 SM00347 helix_turn_helix multiple antibiotic resistance protein AMQ28_RS01630 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMQ28_RS01640 SM00411 bacterial (prokaryotic) histone like domain AMQ28_RS01645 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS01670 SM00986 Uracil DNA glycosylase superfamily AMQ28_RS01670 SM00987 UreE urease accessory protein, C-terminal domain AMQ28_RS01730 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS01745 SM00470 ParB-like nuclease domain AMQ28_RS01790 SM00853 MutL C terminal dimerisation domain AMQ28_RS01790 SM01340 AMQ28_RS01790 AMQ28_RS01815 SM00363 S4 RNA-binding domain AMQ28_RS01825 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMQ28_RS01825 SM00267 diguanylate cyclase AMQ28_RS01835 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS01850 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS01850 SM00487 DEAD-like helicases superfamily AMQ28_RS01850 SM00490 helicase superfamily c-terminal domain AMQ28_RS01850 SM00847 Helicase associated domain (HA2) Add an annotation AMQ28_RS01950 SM00226 Low molecular weight phosphatase family AMQ28_RS01960 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMQ28_RS02030 SM00487 DEAD-like helicases superfamily AMQ28_RS02030 SM00490 helicase superfamily c-terminal domain AMQ28_RS02085 SM01118 AMQ28_RS02085 AMQ28_RS02090 SM00880 AMQ28_RS02090 AMQ28_RS02090 SM01118 AMQ28_RS02090 AMQ28_RS02115 SM00849 Metallo-beta-lactamase superfamily AMQ28_RS02140 SM00220 Serine/Threonine protein kinases, catalytic domain AMQ28_RS02230 SM00855 Phosphoglycerate mutase family AMQ28_RS02250 SM00487 DEAD-like helicases superfamily AMQ28_RS02250 SM00490 helicase superfamily c-terminal domain AMQ28_RS02255 SM00357 Cold shock protein domain AMQ28_RS02335 SM00981 AMQ28_RS02335 AMQ28_RS02350 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS02350 SM01086 C-terminal, D2-small domain, of ClpB protein AMQ28_RS02360 SM00100 Cyclic nucleotide-monophosphate binding domain AMQ28_RS02360 SM00419 helix_turn_helix, cAMP Regulatory protein AMQ28_RS02380 SM00788 Adenylosuccinate synthetase AMQ28_RS02395 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_RS02400 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_RS02475 SM00830 Chorismate mutase type II AMQ28_RS02530 SM00387 Histidine kinase-like ATPases AMQ28_RS02530 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS02535 SM00448 cheY-homologous receiver domain AMQ28_RS02535 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS02545 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS02575 SM00422 helix_turn_helix, mercury resistance AMQ28_RS02620 SM00460 Transglutaminase/protease-like homologues AMQ28_RS02645 SM00841 Elongation factor P, C-terminal AMQ28_RS02645 SM01185 AMQ28_RS02645 AMQ28_RS02660 SM00052 Putative diguanylate phosphodiesterase AMQ28_RS02705 SM00257 Lysin motif AMQ28_RS02725 SM00936 Penicillin-binding protein 5, C-terminal domain AMQ28_RS02770 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS02810 SM00014 Acid phosphatase homologues AMQ28_RS02815 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMQ28_RS02845 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMQ28_RS02860 SM00487 DEAD-like helicases superfamily AMQ28_RS02860 SM00490 helicase superfamily c-terminal domain AMQ28_RS02900 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS02930 SM00358 Double-stranded RNA binding motif AMQ28_RS02930 SM00535 Ribonuclease III family AMQ28_RS02955 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_RS03005 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS03050 SM00867 YceI-like domain AMQ28_RS03080 SM01211 AMQ28_RS03080 AMQ28_RS03090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMQ28_RS03095 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMQ28_RS03100 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS03220 SM00849 Metallo-beta-lactamase superfamily AMQ28_RS03225 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS03285 SM00434 DNA Topoisomerase IV AMQ28_RS03290 SM00893 Electron transfer flavoprotein domain AMQ28_RS03295 SM00893 Electron transfer flavoprotein domain AMQ28_RS03315 SM00344 helix_turn_helix ASNC type AMQ28_RS03355 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS03360 SM00978 AMQ28_RS03360 AMQ28_RS03380 SM00671 Sel1-like repeats. AMQ28_RS03400 SM00996 S-adenosyl-L-homocysteine hydrolase AMQ28_RS03400 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMQ28_RS03415 SM00052 Putative diguanylate phosphodiesterase AMQ28_RS03415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMQ28_RS03415 SM00091 PAS domain AMQ28_RS03415 SM00267 diguanylate cyclase AMQ28_RS03420 SM00919 Malic enzyme, NAD binding domain AMQ28_RS03420 SM01274 AMQ28_RS03420 AMQ28_RS03465 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS03480 SM00852 Probable molybdopterin binding domain AMQ28_RS03485 SM00852 Probable molybdopterin binding domain AMQ28_RS03505 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS03595 SM00829 Enoylreductase AMQ28_RS03645 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_RS03645 SM00924 MgtE intracellular N domain AMQ28_RS03670 SM01091 Transporter associated domain AMQ28_RS03710 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS03720 SM01103 AMQ28_RS03720 AMQ28_RS03735 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMQ28_RS03740 SM00851 MGS-like domain AMQ28_RS03740 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMQ28_RS03860 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS03870 SM00947 Carbonic anhydrase AMQ28_RS03910 SM01018 B12 binding domain AMQ28_RS03985 SM00267 diguanylate cyclase AMQ28_RS03995 SM01322 AMQ28_RS03995 AMQ28_RS04140 SM00073 Histidine Phosphotransfer domain AMQ28_RS04140 SM00260 Two component signalling adaptor domain AMQ28_RS04140 SM00387 Histidine kinase-like ATPases AMQ28_RS04140 SM00448 cheY-homologous receiver domain AMQ28_RS04140 SM01231 AMQ28_RS04140 AMQ28_RS04150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMQ28_RS04155 SM00260 Two component signalling adaptor domain AMQ28_RS04160 SM00448 cheY-homologous receiver domain AMQ28_RS04165 SM00448 cheY-homologous receiver domain AMQ28_RS04270 SM01040 BRO family, N-terminal domain AMQ28_RS04400 SM01004 Delta-aminolevulinic acid dehydratase AMQ28_RS04490 SM00357 Cold shock protein domain AMQ28_RS04535 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_RS04535 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMQ28_RS04540 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMQ28_RS04575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMQ28_RS04575 SM00387 Histidine kinase-like ATPases AMQ28_RS04575 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS04580 SM00448 cheY-homologous receiver domain AMQ28_RS04580 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS04660 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_RS04660 SM00895 AMQ28_RS04660 AMQ28_RS04670 SM00257 Lysin motif AMQ28_RS04705 SM00564 beta-propeller repeat AMQ28_RS04720 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS04745 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMQ28_RS04745 SM01232 AMQ28_RS04745 AMQ28_RS04760 SM00838 Elongation factor G C-terminus AMQ28_RS04785 SM00822 AMQ28_RS04785 AMQ28_RS04790 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMQ28_RS04830 SM00363 S4 RNA-binding domain AMQ28_RS04870 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMQ28_RS04870 SM00292 breast cancer carboxy-terminal domain AMQ28_RS04920 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS04930 SM00532 Ligase N family AMQ28_RS04935 SM00532 Ligase N family AMQ28_RS04940 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMQ28_RS04950 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_RS04975 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS04975 SM00962 SRP54-type protein, GTPase domain AMQ28_RS04975 SM00963 SRP54-type protein, helical bundle domain AMQ28_RS05190 SM00331 Sigma factor PP2C-like phosphatases AMQ28_RS05210 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS05230 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMQ28_RS05230 SM00474 3'-5' exonuclease AMQ28_RS05230 SM00475 5'-3' exonuclease AMQ28_RS05230 SM00482 DNA polymerase A domain AMQ28_RS05245 SM00977 TilS substrate C-terminal domain AMQ28_RS05265 SM00357 Cold shock protein domain AMQ28_RS05265 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS05265 SM00959 Rho termination factor, N-terminal domain AMQ28_RS05275 SM00411 bacterial (prokaryotic) histone like domain AMQ28_RS05280 SM00873 B3/4 domain AMQ28_RS05280 SM00874 tRNA synthetase B5 domain AMQ28_RS05280 SM00896 Ferredoxin-fold anticodon binding domain AMQ28_RS05305 SM00479 AMQ28_RS05305 AMQ28_RS05315 SM00450 Rhodanese Homology Domain AMQ28_RS05385 SM00487 DEAD-like helicases superfamily AMQ28_RS05385 SM00490 helicase superfamily c-terminal domain AMQ28_RS05440 SM00052 Putative diguanylate phosphodiesterase AMQ28_RS05440 SM00267 diguanylate cyclase AMQ28_RS05450 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_RS05450 SM00245 tail specific protease AMQ28_RS05515 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS05515 SM00994 ClpX C4-type zinc finger AMQ28_RS05515 SM01086 C-terminal, D2-small domain, of ClpB protein AMQ28_RS05540 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMQ28_RS05550 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMQ28_RS05560 SM00917 LeuA allosteric (dimerisation) domain AMQ28_RS05575 SM00671 Sel1-like repeats. AMQ28_RS05675 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMQ28_RS05720 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMQ28_RS05740 SM00564 beta-propeller repeat AMQ28_RS05765 SM00028 Tetratricopeptide repeats AMQ28_RS05770 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS05775 SM00562 AMQ28_RS05775 AMQ28_RS05785 SM00014 Acid phosphatase homologues AMQ28_RS05860 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS05960 SM00360 RNA recognition motif AMQ28_RS05985 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMQ28_RS05985 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMQ28_RS05985 SM00493 AMQ28_RS05985 AMQ28_RS06005 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS06025 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMQ28_RS06040 SM00870 AMQ28_RS06040 AMQ28_RS06050 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS06055 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS06070 SM01329 AMQ28_RS06070 AMQ28_RS06110 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS06115 SM00421 helix_turn_helix, Lux Regulon AMQ28_RS06190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMQ28_RS06210 SM01060 AMQ28_RS06210 AMQ28_RS06235 SM00363 S4 RNA-binding domain AMQ28_RS06240 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS06275 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_RS06355 SM00849 Metallo-beta-lactamase superfamily AMQ28_RS06395 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_RS06395 SM01091 Transporter associated domain AMQ28_RS06420 SM00487 DEAD-like helicases superfamily AMQ28_RS06420 SM00490 helicase superfamily c-terminal domain AMQ28_RS06435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMQ28_RS06435 SM00267 diguanylate cyclase AMQ28_RS06440 SM00271 DnaJ molecular chaperone homology domain AMQ28_RS06460 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS06460 SM00322 K homology RNA-binding domain AMQ28_RS06465 SM01387 AMQ28_RS06465 AMQ28_RS06575 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS06640 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMQ28_RS06660 SM00732 Likely ribonuclease with RNase H fold. AMQ28_RS06680 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_RS06690 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS06755 SM00899 AMQ28_RS06755 AMQ28_RS06785 SM00421 helix_turn_helix, Lux Regulon AMQ28_RS06785 SM00448 cheY-homologous receiver domain AMQ28_RS06790 SM00387 Histidine kinase-like ATPases AMQ28_RS06790 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS06795 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS06795 SM00448 cheY-homologous receiver domain AMQ28_RS06800 SM00245 tail specific protease AMQ28_RS06870 SM00938 Nitrogen regulatory protein P-II AMQ28_RS06880 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS06920 SM00434 DNA Topoisomerase IV AMQ28_RS06940 SM01091 Transporter associated domain AMQ28_RS06965 SM00641 Glycosyl hydrolases family 25 AMQ28_RS06985 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS07065 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS07085 SM00829 Enoylreductase AMQ28_RS07105 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS07155 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS07205 SM00448 cheY-homologous receiver domain AMQ28_RS07205 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS07210 SM00387 Histidine kinase-like ATPases AMQ28_RS07210 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS07225 SM00267 diguanylate cyclase AMQ28_RS07320 SM00487 DEAD-like helicases superfamily AMQ28_RS07320 SM00490 helicase superfamily c-terminal domain AMQ28_RS07355 SM00507 HNH nucleases AMQ28_RS07400 SM00487 DEAD-like helicases superfamily AMQ28_RS07400 SM00490 helicase superfamily c-terminal domain AMQ28_RS07405 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS07455 SM00988 UreE urease accessory protein, N-terminal domain AMQ28_RS07500 SM00849 Metallo-beta-lactamase superfamily AMQ28_RS07515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMQ28_RS07535 SM00448 cheY-homologous receiver domain AMQ28_RS07535 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS07540 SM00387 Histidine kinase-like ATPases AMQ28_RS07540 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS07570 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS07620 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS07685 SM00984 UDP binding domain AMQ28_RS07760 SM00984 UDP binding domain AMQ28_RS07770 SM00226 Low molecular weight phosphatase family AMQ28_RS07800 SM00478 endonuclease III AMQ28_RS07820 SM00829 Enoylreductase AMQ28_RS07845 SM00271 DnaJ molecular chaperone homology domain AMQ28_RS07890 SM00830 Chorismate mutase type II AMQ28_RS07935 SM00248 ankyrin repeats AMQ28_RS08000 SM00849 Metallo-beta-lactamase superfamily AMQ28_RS08065 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS08075 SM00387 Histidine kinase-like ATPases AMQ28_RS08075 SM00433 TopoisomeraseII AMQ28_RS08085 SM00480 DNA polymerase III beta subunit AMQ28_RS08090 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS08090 SM00760 Bacterial dnaA protein helix-turn-helix domain AMQ28_RS08105 SM01234 AMQ28_RS08105 AMQ28_RS08170 SM01001 AIR carboxylase AMQ28_RS08245 SM00904 Riboflavin kinase AMQ28_RS08265 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS08295 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_RS08300 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_RS08365 SM00644 AMQ28_RS08365 AMQ28_RS08380 SM00052 Putative diguanylate phosphodiesterase AMQ28_RS08380 SM00267 diguanylate cyclase AMQ28_RS08385 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS08400 SM01130 AMQ28_RS08400 AMQ28_RS08445 SM00450 Rhodanese Homology Domain AMQ28_RS08460 SM00836 DALR anticodon binding domain AMQ28_RS08460 SM01016 Arginyl tRNA synthetase N terminal dom AMQ28_RS08510 SM00387 Histidine kinase-like ATPases AMQ28_RS08510 SM00433 TopoisomeraseII AMQ28_RS08545 SM00267 diguanylate cyclase AMQ28_RS08590 SM00347 helix_turn_helix multiple antibiotic resistance protein AMQ28_RS08625 SM00842 Cell division protein FtsA AMQ28_RS08630 SM00864 Tubulin/FtsZ family, GTPase domain AMQ28_RS08630 SM00865 Tubulin/FtsZ family, C-terminal domain AMQ28_RS08670 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_RS08670 SM01240 AMQ28_RS08670 AMQ28_RS08695 SM00937 AMQ28_RS08695 AMQ28_RS08700 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMQ28_RS08755 SM00421 helix_turn_helix, Lux Regulon AMQ28_RS08755 SM00448 cheY-homologous receiver domain AMQ28_RS08765 SM00387 Histidine kinase-like ATPases AMQ28_RS08765 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS08765 SM00448 cheY-homologous receiver domain AMQ28_RS08910 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS08995 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS09065 SM00870 AMQ28_RS09065 AMQ28_RS09130 SM00477 DNA/RNA non-specific endonuclease AMQ28_RS09130 SM00892 DNA/RNA non-specific endonuclease AMQ28_RS09140 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS09175 SM00474 3'-5' exonuclease AMQ28_RS09270 SM00465 GIY-YIG type nucleases (URI domain) AMQ28_RS09300 SM00448 cheY-homologous receiver domain AMQ28_RS09300 SM00850 LytTr DNA-binding domain AMQ28_RS09330 SM00528 Domain in histone-like proteins of HNS family AMQ28_RS09350 SM00240 Forkhead associated domain AMQ28_RS09395 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMQ28_RS09395 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMQ28_RS09400 SM00649 Ribosomal protein L11/L12 AMQ28_RS09425 SM00663 RNA polymerase I subunit A N-terminus AMQ28_RS09465 SM00387 Histidine kinase-like ATPases AMQ28_RS09510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMQ28_RS09510 SM00387 Histidine kinase-like ATPases AMQ28_RS09510 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS09515 SM00448 cheY-homologous receiver domain AMQ28_RS09515 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS09520 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS09520 SM00732 Likely ribonuclease with RNase H fold. AMQ28_RS09530 SM00822 AMQ28_RS09530 AMQ28_RS09540 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS09715 SM00842 Cell division protein FtsA AMQ28_RS09735 SM00965 Secretin and TonB N terminus short domain AMQ28_RS09820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMQ28_RS09820 SM00954 Region found in RelA / SpoT proteins AMQ28_RS09825 SM01409 AMQ28_RS09825 AMQ28_RS09830 SM00072 Guanylate kinase homologues. AMQ28_RS10025 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS10055 SM00861 Transketolase, pyrimidine binding domain AMQ28_RS10065 SM00487 DEAD-like helicases superfamily AMQ28_RS10065 SM00490 helicase superfamily c-terminal domain AMQ28_RS10070 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS10115 SM00487 DEAD-like helicases superfamily AMQ28_RS10115 SM00490 helicase superfamily c-terminal domain AMQ28_RS10125 SM00563 Phosphate acyltransferases AMQ28_RS10175 SM01403 AMQ28_RS10175 AMQ28_RS10195 SM01382 AMQ28_RS10195 AMQ28_RS10195 SM01383 AMQ28_RS10195 AMQ28_RS10210 SM00322 K homology RNA-binding domain AMQ28_RS10230 SM01374 AMQ28_RS10230 AMQ28_RS10235 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMQ28_RS10300 SM00363 S4 RNA-binding domain AMQ28_RS10300 SM01390 AMQ28_RS10300 AMQ28_RS10305 SM00662 RNA polymerases D AMQ28_RS10365 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS10365 SM00955 AMQ28_RS10365 AMQ28_RS10460 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS10495 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMQ28_RS10580 SM00450 Rhodanese Homology Domain AMQ28_RS10605 SM00481 DNA polymerase alpha chain like domain AMQ28_RS10745 SM00487 DEAD-like helicases superfamily AMQ28_RS10780 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMQ28_RS10780 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMQ28_RS10820 SM00073 Histidine Phosphotransfer domain AMQ28_RS10820 SM00387 Histidine kinase-like ATPases AMQ28_RS10820 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS10820 SM00448 cheY-homologous receiver domain AMQ28_RS10840 SM00954 Region found in RelA / SpoT proteins AMQ28_RS10855 SM01323 AMQ28_RS10855 AMQ28_RS10885 SM00387 Histidine kinase-like ATPases AMQ28_RS10885 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS11020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMQ28_RS11020 SM00387 Histidine kinase-like ATPases AMQ28_RS11020 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS11025 SM00448 cheY-homologous receiver domain AMQ28_RS11025 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS11085 SM00342 helix_turn_helix, arabinose operon control protein AMQ28_RS11110 SM00195 Dual specificity phosphatase, catalytic domain AMQ28_RS11115 SM00849 Metallo-beta-lactamase superfamily AMQ28_RS11125 SM00957 SecA DEAD-like domain AMQ28_RS11125 SM00958 SecA preprotein cross-linking domain AMQ28_RS11240 SM00650 Ribosomal RNA adenine dimethylases AMQ28_RS11275 SM00563 Phosphate acyltransferases AMQ28_RS11280 SM00155 Phospholipase D. Active site motifs. AMQ28_RS11325 SM00671 Sel1-like repeats. AMQ28_RS11410 SM00825 Beta-ketoacyl synthase AMQ28_RS11430 SM00838 Elongation factor G C-terminus AMQ28_RS11430 SM00889 Elongation factor G, domain IV AMQ28_RS11465 SM00843 AMQ28_RS11465 AMQ28_RS11500 SM00563 Phosphate acyltransferases AMQ28_RS11560 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS11565 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS11585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMQ28_RS11585 SM00267 diguanylate cyclase AMQ28_RS11680 SM00845 GatB domain AMQ28_RS11715 SM00316 Ribosomal protein S1-like RNA-binding domain AMQ28_RS11800 SM00244 prohibitin homologues AMQ28_RS11815 SM00563 Phosphate acyltransferases AMQ28_RS11835 SM00448 cheY-homologous receiver domain AMQ28_RS11835 SM00862 Transcriptional regulatory protein, C terminal AMQ28_RS11840 SM00387 Histidine kinase-like ATPases AMQ28_RS11840 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS11855 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS11870 SM00062 Bacterial periplasmic substrate-binding proteins AMQ28_RS11915 SM00822 AMQ28_RS11915 AMQ28_RS11945 SM00014 Acid phosphatase homologues AMQ28_RS12050 SM00450 Rhodanese Homology Domain AMQ28_RS12075 SM01400 AMQ28_RS12075 AMQ28_RS12110 SM00028 Tetratricopeptide repeats AMQ28_RS12120 SM00400 zinc finger AMQ28_RS12120 SM00493 AMQ28_RS12120 AMQ28_RS12130 SM00363 S4 RNA-binding domain AMQ28_RS12245 SM00861 Transketolase, pyrimidine binding domain AMQ28_RS12265 SM00881 CoA binding domain AMQ28_RS12285 SM00829 Enoylreductase AMQ28_RS12320 SM00420 helix_turn_helix, Deoxyribose operon repressor AMQ28_RS12320 SM01134 AMQ28_RS12320 AMQ28_RS12335 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMQ28_RS12345 SM00883 Chaperonin 10 Kd subunit AMQ28_RS12365 SM00563 Phosphate acyltransferases AMQ28_RS12410 SM00478 endonuclease III AMQ28_RS12420 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMQ28_RS12455 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS12455 SM00464 Found in ATP-dependent protease La (LON) AMQ28_RS12465 SM00422 helix_turn_helix, mercury resistance AMQ28_RS12470 SM00746 metallochaperone-like domain AMQ28_RS12480 SM00919 Malic enzyme, NAD binding domain AMQ28_RS12480 SM01274 AMQ28_RS12480 AMQ28_RS12515 SM01011 Aminopeptidase P, N-terminal domain AMQ28_RS12565 SM00479 AMQ28_RS12565 AMQ28_RS12570 SM00257 Lysin motif AMQ28_RS12590 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS12630 SM00479 AMQ28_RS12630 AMQ28_RS12640 SM00267 diguanylate cyclase AMQ28_RS12655 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMQ28_RS12655 SM00895 AMQ28_RS12655 AMQ28_RS12735 SM00463 Small MutS-related domain AMQ28_RS12760 SM01230 AMQ28_RS12760 AMQ28_RS12825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_RS12900 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS12935 SM00479 AMQ28_RS12935 AMQ28_RS13065 SM00530 Helix-turn-helix XRE-family like proteins AMQ28_RS13090 SM01040 BRO family, N-terminal domain AMQ28_RS13120 SM00954 Region found in RelA / SpoT proteins AMQ28_RS13310 SM01329 AMQ28_RS13310 AMQ28_RS13345 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMQ28_RS13370 SM00100 Cyclic nucleotide-monophosphate binding domain AMQ28_RS13370 SM00419 helix_turn_helix, cAMP Regulatory protein AMQ28_RS13390 SM00344 helix_turn_helix ASNC type AMQ28_RS13400 SM00563 Phosphate acyltransferases AMQ28_RS13435 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS13435 SM00876 Biotin and Thiamin Synthesis associated domain AMQ28_RS13485 SM00861 Transketolase, pyrimidine binding domain AMQ28_RS13500 SM00867 YceI-like domain AMQ28_RS13540 SM01012 AMQ28_RS13540 AMQ28_RS13560 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMQ28_RS13570 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS13605 SM00346 helix_turn_helix isocitrate lyase regulation AMQ28_RS13620 SM00840 AMQ28_RS13620 AMQ28_RS13625 SM00116 Domain in cystathionine beta-synthase and other proteins. AMQ28_RS13645 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS13670 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS13710 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMQ28_RS13710 SM00534 ATPase domain of DNA mismatch repair MUTS family AMQ28_RS13735 SM00481 DNA polymerase alpha chain like domain AMQ28_RS13745 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS13745 SM00930 AMQ28_RS13745 AMQ28_RS13755 SM01209 AMQ28_RS13755 AMQ28_RS13755 SM01210 AMQ28_RS13755 AMQ28_RS13760 SM00798 AICARFT/IMPCHase bienzyme AMQ28_RS13760 SM00851 MGS-like domain AMQ28_RS13790 SM01228 AMQ28_RS13790 AMQ28_RS13800 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS13800 SM00448 cheY-homologous receiver domain AMQ28_RS13805 SM00091 PAS domain AMQ28_RS13805 SM00387 Histidine kinase-like ATPases AMQ28_RS13805 SM00388 His Kinase A (phosphoacceptor) domain AMQ28_RS13810 SM00729 Elongator protein 3, MiaB family, Radical SAM AMQ28_RS13840 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMQ28_RS13850 SM00935 Outer membrane protein (OmpH-like) AMQ28_RS13880 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS13885 SM00363 S4 RNA-binding domain AMQ28_RS13925 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMQ28_RS13990 SM00421 helix_turn_helix, Lux Regulon AMQ28_RS14035 SM00487 DEAD-like helicases superfamily AMQ28_RS14035 SM00490 helicase superfamily c-terminal domain AMQ28_RS14035 SM00982 AMQ28_RS14035 AMQ28_RS14035 SM01058 CarD-like/TRCF domain AMQ28_RS14045 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AMQ28_RS14060 SM00271 DnaJ molecular chaperone homology domain AMQ28_RS14095 SM00411 bacterial (prokaryotic) histone like domain AMQ28_RS14140 SM01264 AMQ28_RS14140 AMQ28_RS14180 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMQ28_RS14195 SM00382 ATPases associated with a variety of cellular activities AMQ28_RS14195 SM01086 C-terminal, D2-small domain, of ClpB protein AMQ28_RS14245 SM01192 AMQ28_RS14245 AMQ28_RS14245 SM01193 AMQ28_RS14245