locus-tag	class	description
CDG55_RS00050	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CDG55_RS00070	COG1598	PFAM Uncharacterised protein family UPF0150
CDG55_RS00105	COG2076	Multidrug Resistance protein
CDG55_RS00135	COG2801	Transposase and inactivated derivatives
CDG55_RS00185	COG2184	nucleotidyltransferase activity
CDG55_RS00295	COG0582	viral genome integration into host DNA
CDG55_RS00325	COG1660	Displays ATPase and GTPase activities
CDG55_RS00385	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CDG55_RS00390	COG3657	addiction module killer protein
CDG55_RS00395	COG2826	transposase and inactivated derivatives, IS30 family
CDG55_RS00425	COG1324	tolerance protein
CDG55_RS00430	COG0673	inositol 2-dehydrogenase activity
CDG55_RS00450	COG2826	transposase and inactivated derivatives, IS30 family
CDG55_RS00495	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CDG55_RS00525	COG0583	DNA-binding transcription factor activity
CDG55_RS00575	COG1475	DNA binding
CDG55_RS00580	COG1192	Involved in chromosome partitioning
CDG55_RS00590	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CDG55_RS00605	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CDG55_RS00660	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CDG55_RS00675	COG3293	Transposase
CDG55_RS00700	COG3293	Transposase
CDG55_RS00710	COG0582	viral genome integration into host DNA
CDG55_RS00745	COG2855	membrane
CDG55_RS00750	COG0583	DNA-binding transcription factor activity
CDG55_RS00795	COG2801	Transposase and inactivated derivatives
CDG55_RS00840	COG1373	ATPase (AAA superfamily
CDG55_RS00915	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CDG55_RS00945	COG0789	Transcriptional regulator
CDG55_RS00955	COG0640	Transcriptional regulator
CDG55_RS00965	COG1230	cation diffusion facilitator family transporter
CDG55_RS00985	COG3173	Aminoglycoside phosphotransferase
CDG55_RS00990	COG0488	(ABC) transporter
CDG55_RS01005	COG2801	Transposase and inactivated derivatives
CDG55_RS01050	COG2801	Transposase and inactivated derivatives
CDG55_RS01115	COG0789	Transcriptional regulator
CDG55_RS01180	COG0592	DNA-directed DNA polymerase activity
CDG55_RS01190	COG0187	DNA topoisomerase II activity
CDG55_RS01195	COG0586	Pfam SNARE associated Golgi protein
CDG55_RS01200	COG0488	(ABC) transporter
CDG55_RS01235	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CDG55_RS01240	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CDG55_RS01295	COG1012	belongs to the aldehyde dehydrogenase family
CDG55_RS01300	COG0733	neurotransmitter:sodium symporter activity
CDG55_RS01330	COG2233	PERMEase
CDG55_RS01365	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CDG55_RS01375	COG0583	DNA-binding transcription factor activity
CDG55_RS01385	COG1064	alcohol dehydrogenase
CDG55_RS01390	COG2818	Glycosylase
CDG55_RS01405	COG1194	a g-specific adenine glycosylase
CDG55_RS01415	COG5487	UPF0391 membrane protein
CDG55_RS01420	COG2983	Belongs to the UPF0260 family
CDG55_RS01430	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CDG55_RS01450	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CDG55_RS01460	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CDG55_RS01465	COG1335	isochorismatase
CDG55_RS01470	COG1522	sequence-specific DNA binding
CDG55_RS01480	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CDG55_RS01490	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CDG55_RS01495	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
CDG55_RS01520	COG0560	Phosphoserine phosphatase
CDG55_RS01520	COG3830	Belongs to the UPF0237 family
CDG55_RS01595	COG0534	Mate efflux family protein
CDG55_RS01600	COG0436	Aminotransferase
CDG55_RS01610	COG2733	membrane
CDG55_RS01625	COG2918	glutathione biosynthetic process
CDG55_RS01645	COG3150	esterase
CDG55_RS01730	COG1393	Belongs to the ArsC family
CDG55_RS01735	COG0708	Exodeoxyribonuclease III
CDG55_RS01770	COG0386	Belongs to the glutathione peroxidase family
CDG55_RS01775	COG0189	ligase activity
CDG55_RS01795	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CDG55_RS01805	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CDG55_RS01845	COG2119	membrane
CDG55_RS01850	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CDG55_RS01850	COG0426	domain, Protein
CDG55_RS01875	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CDG55_RS01895	COG1902	pentaerythritol trinitrate reductase activity
CDG55_RS01905	COG1519	Transferase
CDG55_RS01910	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CDG55_RS01915	COG0668	transmembrane transport
CDG55_RS01925	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CDG55_RS01930	COG1335	isochorismatase
CDG55_RS01935	COG1522	sequence-specific DNA binding
CDG55_RS01985	COG0352	thiamine-phosphate diphosphorylase activity
CDG55_RS01985	COG0351	phosphomethylpyrimidine kinase
CDG55_RS01985	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CDG55_RS01995	COG2814	Major facilitator Superfamily
CDG55_RS02010	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
CDG55_RS02035	COG3177	Filamentation induced by cAMP protein fic
CDG55_RS02115	COG0736	holo-[acyl-carrier-protein] synthase activity
CDG55_RS02180	COG0582	viral genome integration into host DNA
CDG55_RS02220	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CDG55_RS02235	COG2329	Antibiotic biosynthesis monooxygenase
CDG55_RS02260	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CDG55_RS02290	COG0427	acetyl-CoA hydrolase
CDG55_RS02325	COG4221	oxidoreductase activity
CDG55_RS02335	COG0488	(ABC) transporter
CDG55_RS02390	COG0833	amino acid
CDG55_RS02415	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CDG55_RS02435	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CDG55_RS02440	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CDG55_RS02450	COG2226	methyltransferase
CDG55_RS02505	COG0069	glutamate synthase activity
CDG55_RS02505	COG0067	glutamate synthase
CDG55_RS02505	COG0070	glutamate synthase
CDG55_RS02510	COG0493	'glutamate synthase
CDG55_RS02520	COG1704	LemA family
CDG55_RS02525	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CDG55_RS02550	COG1132	(ABC) transporter
CDG55_RS02555	COG1088	dTDP-glucose 4,6-dehydratase activity
CDG55_RS02560	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CDG55_RS02580	COG1028	Short-chain dehydrogenase reductase Sdr
CDG55_RS02585	COG0318	PFAM AMP-dependent synthetase and ligase
CDG55_RS02610	COG0463	Glycosyl transferase, family 2
CDG55_RS02610	COG1216	Glycosyl transferase, family 2
CDG55_RS02640	COG4969	Belongs to the N-Me-Phe pilin family
CDG55_RS02650	COG3307	-O-antigen
CDG55_RS02670	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CDG55_RS02680	COG0194	GDP metabolic process
CDG55_RS02685	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CDG55_RS02725	COG0228	four-way junction DNA binding
CDG55_RS02730	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CDG55_RS02740	COG0335	large ribosomal subunit rRNA binding
CDG55_RS02745	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
CDG55_RS02750	COG5380	lipid catabolic process
CDG55_RS02755	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CDG55_RS02770	COG5006	permease, DMT superfamily
CDG55_RS02775	COG5006	permease, DMT superfamily
CDG55_RS02780	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CDG55_RS02790	COG0277	FAD linked oxidase domain protein
CDG55_RS02805	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CDG55_RS02810	COG2249	NAD(P)H dehydrogenase (quinone) activity
CDG55_RS02835	COG0628	permease
CDG55_RS02845	COG1192	Involved in chromosome partitioning
CDG55_RS02855	COG2226	methyltransferase
CDG55_RS02930	COG0517	IMP dehydrogenase activity
CDG55_RS02935	COG1983	PspC domain protein
CDG55_RS02945	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS02960	COG0408	coproporphyrinogen oxidase activity
CDG55_RS02965	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CDG55_RS02995	COG1127	ABC transporter
CDG55_RS03000	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CDG55_RS03005	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CDG55_RS03010	COG2854	intermembrane phospholipid transfer
CDG55_RS03020	COG0598	Magnesium transport protein CorA
CDG55_RS03030	COG1040	competence protein
CDG55_RS03035	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CDG55_RS03055	COG2937	Belongs to the GPAT DAPAT family
CDG55_RS03060	COG1946	Acyl-CoA thioesterase
CDG55_RS03065	COG1301	dicarboxylic acid transport
CDG55_RS03080	COG1959	2 iron, 2 sulfur cluster binding
CDG55_RS03090	COG0433	COG0433 Predicted ATPase
CDG55_RS03095	COG0626	cystathionine gamma-synthase activity
CDG55_RS03110	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CDG55_RS03115	COG0088	Forms part of the polypeptide exit tunnel
CDG55_RS03130	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CDG55_RS03180	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CDG55_RS03195	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CDG55_RS03260	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS03265	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CDG55_RS03305	COG0339	signal peptide processing
CDG55_RS03310	COG0557	exoribonuclease II activity
CDG55_RS03345	COG0179	Fumarylacetoacetate (FAA) hydrolase
CDG55_RS03350	COG1295	ribonuclease BN
CDG55_RS03380	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CDG55_RS03405	COG2813	Specifically methylates the guanine in position
CDG55_RS03405	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CDG55_RS03415	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CDG55_RS03425	COG4774	siderophore transport
CDG55_RS03435	COG0740	serine-type endopeptidase activity
CDG55_RS03455	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
CDG55_RS03455	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
CDG55_RS03460	COG0280	phosphate acetyltransferase
CDG55_RS03460	COG0857	belongs to the CobB CobQ family
CDG55_RS03465	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CDG55_RS03490	COG0793	Belongs to the peptidase S41A family
CDG55_RS03515	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CDG55_RS03525	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CDG55_RS03530	COG1408	metallophosphoesterase
CDG55_RS03540	COG2199	diguanylate cyclase activity
CDG55_RS03595	COG1607	acyl-coa hydrolase
CDG55_RS03605	COG1666	GTP binding
CDG55_RS03640	COG3781	membrane
CDG55_RS03650	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CDG55_RS03660	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CDG55_RS03675	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CDG55_RS03685	COG1162	GTPase activity
CDG55_RS03690	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CDG55_RS03695	COG2814	Major facilitator Superfamily
CDG55_RS03735	COG0004	ammonium transporteR
CDG55_RS03750	COG3622	Belongs to the hyi family
CDG55_RS03755	COG2084	Dehydrogenase
CDG55_RS03765	COG5002	protein histidine kinase activity
CDG55_RS03765	COG2205	protein histidine kinase activity
CDG55_RS03765	COG0784	Response regulator, receiver
CDG55_RS03785	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CDG55_RS03815	COG3956	TIGRFAM MazG family protein
CDG55_RS03820	COG1555	photosystem II stabilization
CDG55_RS03825	COG0617	tRNA 3'-terminal CCA addition
CDG55_RS03830	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CDG55_RS03850	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CDG55_RS03855	COG3028	Belongs to the UPF0307 family
CDG55_RS03860	COG0318	PFAM AMP-dependent synthetase and ligase
CDG55_RS03880	COG0625	glutathione transferase activity
CDG55_RS03885	COG1238	metal cluster binding
CDG55_RS03920	COG0072	phenylalanine-tRNA ligase activity
CDG55_RS03945	COG0248	Ppx GppA phosphatase
CDG55_RS03955	COG0037	tRNA processing
CDG55_RS03970	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CDG55_RS03970	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CDG55_RS03995	COG1764	response to oxidative stress
CDG55_RS04000	COG1846	Transcriptional regulator
CDG55_RS04010	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CDG55_RS04070	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CDG55_RS04075	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CDG55_RS04085	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CDG55_RS04150	COG1214	PFAM Peptidase M22, glycoprotease
CDG55_RS04155	COG1968	undecaprenyl-diphosphatase activity
CDG55_RS04180	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CDG55_RS04190	COG2132	Multicopper oxidase
CDG55_RS04215	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CDG55_RS04220	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CDG55_RS04225	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CDG55_RS04275	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CDG55_RS04300	COG0745	RESPONSE REGULATOR receiver
CDG55_RS04305	COG2205	protein histidine kinase activity
CDG55_RS04320	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CDG55_RS04330	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CDG55_RS04330	COG0649	NAD binding
CDG55_RS04340	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
CDG55_RS04355	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CDG55_RS04370	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CDG55_RS04375	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CDG55_RS04395	COG1278	Cold shock
CDG55_RS04400	COG0583	DNA-binding transcription factor activity
CDG55_RS04420	COG0668	transmembrane transport
CDG55_RS04430	COG2081	HI0933 family
CDG55_RS04440	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CDG55_RS04460	COG4716	Myosin-crossreactive antigen
CDG55_RS04470	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CDG55_RS04480	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CDG55_RS04480	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CDG55_RS04500	COG0489	protein tyrosine kinase activity
CDG55_RS04560	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CDG55_RS04575	COG0730	response to heat
CDG55_RS04595	COG1196	nuclear chromosome segregation
CDG55_RS04605	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CDG55_RS04620	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CDG55_RS04625	COG0596	Alpha beta hydrolase
CDG55_RS04625	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CDG55_RS04625	COG2226	methyltransferase
CDG55_RS04640	COG4106	trans-aconitate 2-methyltransferase activity
CDG55_RS04660	COG4166	transmembrane transport
CDG55_RS04665	COG0747	negative chemotaxis
CDG55_RS04670	COG0339	signal peptide processing
CDG55_RS04690	COG1187	pseudouridine synthase activity
CDG55_RS04695	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CDG55_RS04700	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CDG55_RS04710	COG0009	L-threonylcarbamoyladenylate synthase
CDG55_RS04715	COG3101	peptidyl-lysine hydroxylation
CDG55_RS04720	COG1399	metal-binding, possibly nucleic acid-binding protein
CDG55_RS04725	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CDG55_RS04745	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CDG55_RS04750	COG1652	LysM domain
CDG55_RS04755	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CDG55_RS04755	COG0351	phosphomethylpyrimidine kinase
CDG55_RS04755	COG0352	thiamine-phosphate diphosphorylase activity
CDG55_RS04765	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CDG55_RS04785	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CDG55_RS04815	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CDG55_RS04830	COG0358	DNA primase activity
CDG55_RS04840	COG0564	pseudouridine synthase activity
CDG55_RS04955	COG0582	viral genome integration into host DNA
CDG55_RS04965	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDG55_RS04990	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CDG55_RS04990	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CDG55_RS05005	COG1981	membrane
CDG55_RS05025	COG0049	tRNA binding
CDG55_RS05050	COG0456	acetyltransferase
CDG55_RS05060	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CDG55_RS05065	COG0492	ferredoxin-NADP+ reductase activity
CDG55_RS05070	COG1674	ftsk spoiiie
CDG55_RS05075	COG1280	lysine exporter protein (LysE YggA)
CDG55_RS05085	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CDG55_RS05095	COG0850	regulation of cytokinetic process
CDG55_RS05105	COG0204	Acyl-transferase
CDG55_RS05110	COG2885	chlorophyll binding
CDG55_RS05115	COG0210	DNA helicase
CDG55_RS05120	COG0756	dUTP diphosphatase activity
CDG55_RS05140	COG0121	glutamine amidotransferase
CDG55_RS05160	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CDG55_RS05165	COG0735	belongs to the Fur family
CDG55_RS05190	COG0420	3'-5' exonuclease activity
CDG55_RS05210	COG1090	epimerase
CDG55_RS05215	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CDG55_RS05225	COG2050	protein possibly involved in aromatic compounds catabolism
CDG55_RS05230	COG1566	PFAM secretion protein HlyD family protein
CDG55_RS05235	COG2814	Major facilitator Superfamily
CDG55_RS05280	COG0582	viral genome integration into host DNA
CDG55_RS05300	COG1607	acyl-coa hydrolase
CDG55_RS05310	COG0523	cobalamin synthesis protein
CDG55_RS05315	COG4681	YaeQ
CDG55_RS05335	COG1649	PFAM Uncharacterised BCR, COG1649
CDG55_RS05335	COG0726	polysaccharide deacetylase
CDG55_RS05340	COG1215	transferase activity, transferring glycosyl groups
CDG55_RS05385	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CDG55_RS05410	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
CDG55_RS05415	COG1597	lipid kinase activity
CDG55_RS05460	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CDG55_RS05495	COG0288	reversible hydration of carbon dioxide
CDG55_RS05505	COG4181	ATPase activity
CDG55_RS05510	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CDG55_RS05515	COG0705	Rhomboid family
CDG55_RS05515	COG0457	Tetratricopeptide repeat
CDG55_RS05530	COG2070	2-Nitropropane dioxygenase
CDG55_RS05540	COG0415	Belongs to the DNA photolyase family
CDG55_RS05550	COG1252	NADH dehydrogenase
CDG55_RS05555	COG1686	Belongs to the peptidase S11 family
CDG55_RS05575	COG1187	pseudouridine synthase activity
CDG55_RS05590	COG0612	Peptidase, M16
CDG55_RS05605	COG3025	triphosphatase activity
CDG55_RS05630	COG0352	thiamine-phosphate diphosphorylase activity
CDG55_RS05645	COG0564	pseudouridine synthase activity
CDG55_RS05655	COG0783	Belongs to the Dps family
CDG55_RS05685	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CDG55_RS05690	COG0076	glutamate decarboxylase activity
CDG55_RS05700	COG0573	inorganic phosphate transmembrane transporter activity
CDG55_RS05710	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CDG55_RS05715	COG0616	signal peptide processing
CDG55_RS05735	COG0742	ribosomal rna small subunit methyltransferase
CDG55_RS05740	COG0768	penicillin binding
CDG55_RS05770	COG0714	Associated with various cellular activities
CDG55_RS05775	COG2425	protein containing a von Willebrand factor type A (vWA) domain
CDG55_RS05780	COG3552	Protein containing von Willebrand factor type A (VWA) domain
CDG55_RS05790	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CDG55_RS05795	COG2878	Part of a membrane complex involved in electron transport
CDG55_RS05800	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CDG55_RS05810	COG3384	dioxygenase
CDG55_RS05825	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CDG55_RS05840	COG2217	Heavy metal translocating P-type atpase
CDG55_RS05865	COG3079	Belongs to the UPF0149 family
CDG55_RS05870	COG0006	proline dipeptidase activity
CDG55_RS05875	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CDG55_RS05880	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CDG55_RS05935	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CDG55_RS05940	COG0741	lytic transglycosylase activity
CDG55_RS05940	COG1388	LysM domain
CDG55_RS05945	COG4166	transmembrane transport
CDG55_RS05950	COG4174	ABC transporter (Permease)
CDG55_RS05955	COG4239	(ABC) transporter, permease
CDG55_RS05960	COG4172	Belongs to the ABC transporter superfamily
CDG55_RS05980	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CDG55_RS05990	COG3706	GGDEF domain
CDG55_RS05990	COG5001	Diguanylate cyclase
CDG55_RS05990	COG2203	Gaf domain
CDG55_RS05990	COG4251	negative regulation of phosphorylation
CDG55_RS06005	COG3739	integral membrane protein
CDG55_RS06030	COG0302	gtp cyclohydrolase
CDG55_RS06060	COG0512	Glutamine amidotransferase of anthranilate synthase
CDG55_RS06065	COG0174	glutamine synthetase
CDG55_RS06070	COG3161	chorismate lyase activity
CDG55_RS06075	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CDG55_RS06115	COG0436	Aminotransferase
CDG55_RS06125	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CDG55_RS06125	COG1116	anion transmembrane transporter activity
CDG55_RS06140	COG0556	nucleotide-excision repair
CDG55_RS06190	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CDG55_RS06195	COG0583	DNA-binding transcription factor activity
CDG55_RS06200	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CDG55_RS06205	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CDG55_RS06210	COG1773	rubredoxin
CDG55_RS06220	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CDG55_RS06230	COG0175	sulfate reduction
CDG55_RS06245	COG1253	flavin adenine dinucleotide binding
CDG55_RS06260	COG3015	lipoprotein NlpE involved in copper resistance
CDG55_RS06280	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CDG55_RS06280	COG0517	IMP dehydrogenase activity
CDG55_RS06285	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CDG55_RS06295	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CDG55_RS06300	COG1137	ATPase activity
CDG55_RS06320	COG4122	O-methyltransferase activity
CDG55_RS06330	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CDG55_RS06405	COG4783	chaperone-mediated protein folding
CDG55_RS06420	COG1610	YqeY-like protein
CDG55_RS06455	COG2815	serine threonine protein kinase
CDG55_RS06455	COG0515	serine threonine protein kinase
CDG55_RS06505	COG0482	sulfurtransferase activity
CDG55_RS06520	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CDG55_RS06525	COG1686	Belongs to the peptidase S11 family
CDG55_RS06550	COG0583	DNA-binding transcription factor activity
CDG55_RS06555	COG1067	ATP-dependent peptidase activity
CDG55_RS06590	COG1509	lysine 2,3-aminomutase activity
CDG55_RS06595	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CDG55_RS06600	COG1966	Carbon starvation protein
CDG55_RS06605	COG2879	small protein
CDG55_RS06610	COG0714	Associated with various cellular activities
CDG55_RS06645	COG1741	Belongs to the pirin family
CDG55_RS06655	COG0446	pyridine nucleotide-disulphide oxidoreductase
CDG55_RS06655	COG1902	pentaerythritol trinitrate reductase activity
CDG55_RS06760	COG0582	viral genome integration into host DNA
CDG55_RS06780	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS06820	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CDG55_RS06830	COG4106	trans-aconitate 2-methyltransferase activity
CDG55_RS06835	COG0642	Histidine kinase
CDG55_RS06840	COG0745	RESPONSE REGULATOR receiver
CDG55_RS06860	COG2826	transposase and inactivated derivatives, IS30 family
CDG55_RS06870	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CDG55_RS06870	COG0519	Catalyzes the synthesis of GMP from XMP
CDG55_RS06880	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CDG55_RS06925	COG0308	aminopeptidase N
CDG55_RS06935	COG2197	response regulator
CDG55_RS06940	COG4636	protein conserved in cyanobacteria
CDG55_RS06955	COG1714	RDD family
CDG55_RS06960	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CDG55_RS06960	COG0475	glutathione-regulated potassium exporter activity
CDG55_RS06965	COG3135	benzoate transporter
CDG55_RS06975	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CDG55_RS06990	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CDG55_RS07025	COG0316	Belongs to the HesB IscA family
CDG55_RS07030	COG0822	iron-sulfur transferase activity
CDG55_RS07060	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CDG55_RS07075	COG2137	regulation of response to DNA damage stimulus
CDG55_RS07085	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CDG55_RS07090	COG1011	Hydrolase
CDG55_RS07095	COG1218	3'(2'),5'-bisphosphate nucleotidase
CDG55_RS07105	COG0268	Binds directly to 16S ribosomal RNA
CDG55_RS07110	COG0702	epimerase
CDG55_RS07115	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CDG55_RS07145	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CDG55_RS07160	COG1674	ftsk spoiiie
CDG55_RS07170	COG0424	maF-like protein
CDG55_RS07230	COG1286	toxin biosynthetic process
CDG55_RS07290	COG3634	alkyl hydroperoxide reductase activity
CDG55_RS07355	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CDG55_RS07355	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CDG55_RS07375	COG1278	Cold shock
CDG55_RS07380	COG1278	Cold shock
CDG55_RS07385	COG1278	Cold shock
CDG55_RS07400	COG4682	membrane
CDG55_RS07430	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CDG55_RS07435	COG1984	allophanate hydrolase subunit 2
CDG55_RS07440	COG4770	biotin carboxylase activity
CDG55_RS07445	COG0501	Belongs to the peptidase M48B family
CDG55_RS07455	COG1765	OsmC-like protein
CDG55_RS07505	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CDG55_RS07525	COG3634	alkyl hydroperoxide reductase activity
CDG55_RS07540	COG2169	Transcriptional regulator
CDG55_RS07540	COG1917	Cupin 2, conserved barrel domain protein
CDG55_RS07545	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CDG55_RS07560	COG1643	Atp-dependent helicase
CDG55_RS07575	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CDG55_RS07600	COG2951	lytic endotransglycosylase activity
CDG55_RS07605	COG0772	Belongs to the SEDS family
CDG55_RS07620	COG0842	Transport permease protein
CDG55_RS07625	COG1131	(ABC) transporter
CDG55_RS07660	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDG55_RS07665	COG0826	peptidase U32
CDG55_RS07695	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CDG55_RS07700	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CDG55_RS07725	COG2353	YceI-like domain
CDG55_RS07740	COG3698	Phosphodiester glycosidase
CDG55_RS07750	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CDG55_RS07755	COG0506	proline dehydrogenase activity
CDG55_RS07755	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CDG55_RS07755	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CDG55_RS07765	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CDG55_RS07770	COG1027	Aspartate ammonia-lyase
CDG55_RS07790	COG1132	(ABC) transporter
CDG55_RS07815	COG1720	tRNA m6t6A37 methyltransferase activity
CDG55_RS07825	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CDG55_RS07835	COG0494	nUDIX hydrolase
CDG55_RS07845	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CDG55_RS07855	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CDG55_RS07860	COG3139	Protein of unknown function (DUF1315)
CDG55_RS07865	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CDG55_RS07870	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS07885	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CDG55_RS07895	COG2195	Cleaves the N-terminal amino acid of tripeptides
CDG55_RS07935	COG0640	Transcriptional regulator
CDG55_RS07950	COG0583	DNA-binding transcription factor activity
CDG55_RS07965	COG0668	transmembrane transport
CDG55_RS07970	COG3122	Protein conserved in bacteria
CDG55_RS07995	COG2363	Small membrane protein
CDG55_RS08015	COG0513	Belongs to the DEAD box helicase family
CDG55_RS08025	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CDG55_RS08035	COG3178	'Phosphotransferase
CDG55_RS08040	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CDG55_RS08050	COG1192	Involved in chromosome partitioning
CDG55_RS08055	COG1475	DNA binding
CDG55_RS08060	COG0811	peptide transport
CDG55_RS08070	COG1132	(ABC) transporter
CDG55_RS08075	COG1663	tetraacyldisaccharide 4'-kinase activity
CDG55_RS08095	COG0084	hydrolase, TatD family'
CDG55_RS08140	COG0590	tRNA wobble adenosine to inosine editing
CDG55_RS08160	COG0776	regulation of translation
CDG55_RS08180	COG2431	L-lysine efflux transmembrane transporter activity
CDG55_RS08195	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CDG55_RS08200	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CDG55_RS08235	COG0024	Methionine aminopeptidase
CDG55_RS08240	COG0583	DNA-binding transcription factor activity
CDG55_RS08245	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CDG55_RS08255	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CDG55_RS08260	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CDG55_RS08265	COG0517	IMP dehydrogenase activity
CDG55_RS08265	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CDG55_RS08290	COG0552	protein localization to endoplasmic reticulum
CDG55_RS08315	COG4890	Cyd operon protein YbgT
CDG55_RS08320	COG1294	oxidase, subunit
CDG55_RS08345	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CDG55_RS08390	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CDG55_RS08395	COG0569	domain protein
CDG55_RS08400	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CDG55_RS08430	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CDG55_RS08440	COG0542	response to heat
CDG55_RS08450	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CDG55_RS08455	COG2267	carboxylic ester hydrolase activity
CDG55_RS08465	COG1902	pentaerythritol trinitrate reductase activity
CDG55_RS08465	COG0446	pyridine nucleotide-disulphide oxidoreductase
CDG55_RS08500	COG0148	phosphopyruvate hydratase activity
CDG55_RS08505	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CDG55_RS08560	COG1802	Transcriptional regulator
CDG55_RS08565	COG1944	ATP diphosphatase activity
CDG55_RS08590	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CDG55_RS08595	COG0730	response to heat
CDG55_RS08610	COG2801	Transposase and inactivated derivatives
CDG55_RS08630	COG3706	GGDEF domain
CDG55_RS08650	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CDG55_RS08665	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
CDG55_RS08670	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CDG55_RS08700	COG0537	adenosine 5'-monophosphoramidase activity
CDG55_RS08725	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CDG55_RS08755	COG0730	response to heat
CDG55_RS08770	COG4771	TonB-dependent receptor
CDG55_RS08790	COG0406	alpha-ribazole phosphatase activity
CDG55_RS08795	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CDG55_RS08810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CDG55_RS08825	COG2223	nitrite transmembrane transporter activity
CDG55_RS08855	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CDG55_RS08870	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS08875	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS08880	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CDG55_RS08885	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CDG55_RS08890	COG2207	Transcriptional regulator
CDG55_RS08895	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CDG55_RS08905	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CDG55_RS08940	COG0575	Belongs to the CDS family
CDG55_RS08945	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CDG55_RS08950	COG0233	cytoplasmic translational termination
CDG55_RS08965	COG3852	Histidine kinase
CDG55_RS08970	COG2204	response regulator
CDG55_RS09020	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CDG55_RS09045	COG0303	'Molybdopterin
CDG55_RS09050	COG0521	Mo-molybdopterin cofactor biosynthetic process
CDG55_RS09050	COG0315	cyclic pyranopterin monophosphate synthase activity
CDG55_RS09065	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CDG55_RS09075	COG0243	molybdopterin cofactor binding
CDG55_RS09080	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CDG55_RS09085	COG2146	nitrite reductase [NAD(P)H] activity
CDG55_RS09085	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CDG55_RS09090	COG2223	nitrite transmembrane transporter activity
CDG55_RS09100	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CDG55_RS09100	COG1116	anion transmembrane transporter activity
CDG55_RS09110	COG0511	ligase activity, forming carbon-carbon bonds
CDG55_RS09130	COG2814	Major facilitator Superfamily
CDG55_RS09150	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CDG55_RS09155	COG1454	alcohol dehydrogenase
CDG55_RS09160	COG0824	Thioesterase
CDG55_RS09170	COG2850	peptidyl-arginine hydroxylation
CDG55_RS09185	COG2814	Major facilitator Superfamily
CDG55_RS09190	COG3647	Membrane
CDG55_RS09195	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CDG55_RS09235	COG0729	surface antigen
CDG55_RS09260	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CDG55_RS09270	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CDG55_RS09290	COG2130	NADP-dependent
CDG55_RS09295	COG1309	transcriptional regulator
CDG55_RS09305	COG1979	alcohol dehydrogenase
CDG55_RS09320	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
CDG55_RS09335	COG3321	synthase
CDG55_RS09335	COG0604	alcohol dehydrogenase
CDG55_RS09340	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
CDG55_RS09345	COG0583	DNA-binding transcription factor activity
CDG55_RS09350	COG4221	oxidoreductase activity
CDG55_RS09395	COG0012	GTP binding
CDG55_RS09400	COG3706	GGDEF domain
CDG55_RS09415	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CDG55_RS09455	COG1522	sequence-specific DNA binding
CDG55_RS09470	COG0386	Belongs to the glutathione peroxidase family
CDG55_RS09480	COG0436	Aminotransferase
CDG55_RS09490	COG2826	transposase and inactivated derivatives, IS30 family
CDG55_RS09560	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CDG55_RS09590	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CDG55_RS09600	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CDG55_RS09610	COG0697	spore germination
CDG55_RS09615	COG1923	regulation of RNA biosynthetic process
CDG55_RS09625	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CDG55_RS09630	COG0802	atpase or kinase
CDG55_RS09665	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CDG55_RS09685	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CDG55_RS09690	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CDG55_RS09695	COG1845	cytochrome c oxidase, subunit III
CDG55_RS09700	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CDG55_RS09735	COG0305	Participates in initiation and elongation during chromosome replication
CDG55_RS09740	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CDG55_RS09750	COG1305	Transglutaminase-like
CDG55_RS09760	COG2308	Evidence 4 Homologs of previously reported genes of
CDG55_RS09770	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CDG55_RS09775	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CDG55_RS09795	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CDG55_RS09815	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CDG55_RS09830	COG3038	cytochrome b561
CDG55_RS09835	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CDG55_RS09840	COG2252	PERMEase
CDG55_RS09865	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CDG55_RS09910	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CDG55_RS09915	COG0138	bifunctional purine biosynthesis protein purh
CDG55_RS09920	COG0151	Belongs to the GarS family
CDG55_RS09930	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CDG55_RS09935	COG2011	ABC-type metal ion transport system permease component
CDG55_RS09950	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CDG55_RS09960	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CDG55_RS09965	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CDG55_RS09970	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CDG55_RS09980	COG0280	phosphate acetyltransferase
CDG55_RS09980	COG0281	malic enzyme
CDG55_RS09995	COG0052	Belongs to the universal ribosomal protein uS2 family
CDG55_RS10000	COG0024	Methionine aminopeptidase
CDG55_RS10025	COG2223	nitrite transmembrane transporter activity
CDG55_RS10035	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CDG55_RS10040	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CDG55_RS10045	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CDG55_RS10065	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CDG55_RS10070	COG1381	Involved in DNA repair and RecF pathway recombination
CDG55_RS10080	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CDG55_RS10085	COG0571	ribonuclease III activity
CDG55_RS10100	COG0481	GTPase activity
CDG55_RS10110	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CDG55_RS10125	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CDG55_RS10130	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CDG55_RS10135	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CDG55_RS10145	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CDG55_RS10150	COG4208	sulfate ABC transporter
CDG55_RS10155	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CDG55_RS10160	COG0583	DNA-binding transcription factor activity
CDG55_RS10175	COG0602	queuosine metabolic process
CDG55_RS10180	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CDG55_RS10195	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CDG55_RS10205	COG1056	cytidyltransferase-related domain
CDG55_RS10205	COG1051	belongs to the nudix hydrolase family
CDG55_RS10210	COG1024	Enoyl-CoA hydratase
CDG55_RS10215	COG0778	Nitroreductase
CDG55_RS10220	COG3323	Protein of unknown function (DUF1653)
CDG55_RS10220	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CDG55_RS10225	COG0047	phosphoribosylformylglycinamidine synthase activity
CDG55_RS10225	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CDG55_RS10245	COG2255	four-way junction helicase activity
CDG55_RS10255	COG0824	Thioesterase
CDG55_RS10275	COG0823	Involved in the tonB-independent uptake of proteins
CDG55_RS10280	COG2885	chlorophyll binding
CDG55_RS10295	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CDG55_RS10330	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CDG55_RS10335	COG0628	permease
CDG55_RS10345	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CDG55_RS10355	COG0596	Alpha beta hydrolase
CDG55_RS10360	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CDG55_RS10360	COG0616	signal peptide processing
CDG55_RS10365	COG1560	Kdo2-lipid A biosynthetic process
CDG55_RS10370	COG0658	competence protein
CDG55_RS10370	COG2333	competence protein COMEC
CDG55_RS10375	COG1136	(ABC) transporter
CDG55_RS10380	COG4591	ABC-type transport system involved in lipoprotein release permease component
CDG55_RS10395	COG1671	Belongs to the UPF0178 family
CDG55_RS10415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CDG55_RS10455	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CDG55_RS10460	COG1280	lysine exporter protein (LysE YggA)
CDG55_RS10470	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CDG55_RS10475	COG0019	diaminopimelate decarboxylase activity
CDG55_RS10485	COG1113	amino acid transport
CDG55_RS10490	COG1115	amino acid carrier protein
CDG55_RS10505	COG0306	phosphate transporter
CDG55_RS10535	COG0589	response to stress
CDG55_RS10575	COG4149	molybdate abc transporter
CDG55_RS10580	COG0725	ABC transporter, periplasmic molybdate-binding protein
CDG55_RS10595	COG3046	protein related to deoxyribodipyrimidine photolyase
CDG55_RS10605	COG3040	lipid binding
CDG55_RS10610	COG1454	alcohol dehydrogenase
CDG55_RS10625	COG0833	amino acid
CDG55_RS10635	COG3724	N-succinylarginine dihydrolase activity
CDG55_RS10640	COG1012	belongs to the aldehyde dehydrogenase family
CDG55_RS10645	COG3138	arginine N-succinyltransferase
CDG55_RS10650	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CDG55_RS10655	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CDG55_RS10675	COG0281	malic enzyme
CDG55_RS10680	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CDG55_RS10695	COG3038	cytochrome b561
CDG55_RS10720	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CDG55_RS10740	COG0741	lytic transglycosylase activity
CDG55_RS10745	COG0501	Belongs to the peptidase M48B family
CDG55_RS10755	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CDG55_RS10780	COG2304	oxidoreductase activity
CDG55_RS10785	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CDG55_RS10795	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CDG55_RS10820	COG0505	Belongs to the CarA family
CDG55_RS10840	COG0110	maltose O-acetyltransferase activity
CDG55_RS10845	COG0589	response to stress
CDG55_RS10850	COG2321	neutral zinc metallopeptidase
CDG55_RS10855	COG2354	Protein conserved in bacteria
CDG55_RS10865	COG1585	Membrane protein implicated in regulation of membrane protease activity
CDG55_RS10870	COG2268	Band 7 protein
CDG55_RS10885	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CDG55_RS10905	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CDG55_RS10910	COG1053	succinate dehydrogenase
CDG55_RS10915	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CDG55_RS10945	COG1054	Belongs to the UPF0176 family
CDG55_RS10950	COG0586	Pfam SNARE associated Golgi protein
CDG55_RS10975	COG2921	Belongs to the UPF0250 family
CDG55_RS10980	COG0321	lipoyl(octanoyl) transferase activity
CDG55_RS10995	COG0531	amino acid
CDG55_RS11005	COG1733	regulation of RNA biosynthetic process
CDG55_RS11015	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CDG55_RS11020	COG1648	precorrin-2 dehydrogenase activity
CDG55_RS11020	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CDG55_RS11035	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CDG55_RS11050	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CDG55_RS11065	COG0671	phosphoesterase, PA-phosphatase related
CDG55_RS11070	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CDG55_RS11080	COG1538	Outer membrane efflux protein
CDG55_RS11085	COG0393	Putative heavy-metal-binding
CDG55_RS11090	COG0393	Putative heavy-metal-binding
CDG55_RS11095	COG1028	Short-chain dehydrogenase reductase Sdr
CDG55_RS11105	COG0525	valine-tRNA ligase activity
CDG55_RS11135	COG3706	GGDEF domain
CDG55_RS11140	COG0004	ammonium transporteR
CDG55_RS11155	COG0642	Histidine kinase
CDG55_RS11160	COG0745	RESPONSE REGULATOR receiver
CDG55_RS11165	COG2194	sulfuric ester hydrolase activity
CDG55_RS11185	COG1752	Esterase of the alpha-beta hydrolase superfamily
CDG55_RS11205	COG2315	Protein conserved in bacteria
CDG55_RS11210	COG0142	geranyltranstransferase activity
CDG55_RS11220	COG1113	amino acid transport
CDG55_RS11235	COG0174	glutamine synthetase
CDG55_RS11240	COG0671	phosphoesterase, PA-phosphatase related
CDG55_RS11245	COG2207	Transcriptional regulator
CDG55_RS11255	COG0745	RESPONSE REGULATOR receiver
CDG55_RS11260	COG2205	protein histidine kinase activity
CDG55_RS11265	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CDG55_RS11270	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CDG55_RS11275	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CDG55_RS11285	COG0560	Phosphoserine phosphatase
CDG55_RS11295	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CDG55_RS11305	COG1530	ribonuclease E activity
CDG55_RS11310	COG0424	maF-like protein
CDG55_RS11320	COG1792	Involved in formation and maintenance of cell shape
CDG55_RS11325	COG1077	Cell shape determining protein MreB Mrl
CDG55_RS11330	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CDG55_RS11340	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CDG55_RS11360	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
CDG55_RS11365	COG1752	Esterase of the alpha-beta hydrolase superfamily
CDG55_RS11370	COG1115	amino acid carrier protein
CDG55_RS11375	COG0786	glutamate:sodium symporter activity
CDG55_RS11390	COG2814	Major facilitator Superfamily
CDG55_RS11395	COG1289	transmembrane transporter activity
CDG55_RS11450	COG1376	ErfK ybiS ycfS ynhG family protein
CDG55_RS11455	COG2832	Protein of unknown function (DUF454)
CDG55_RS11465	COG5510	response to toxic substance
CDG55_RS11485	COG0840	transmembrane signaling receptor activity
CDG55_RS11515	COG2824	Alkylphosphonate utilization operon protein PhnA
CDG55_RS11535	COG0354	folic acid binding
CDG55_RS11565	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CDG55_RS11575	COG1970	mechanosensitive ion channel activity
CDG55_RS11580	COG1217	gtp-binding protein TYPA
CDG55_RS11585	COG2233	PERMEase
CDG55_RS11595	COG0833	amino acid
CDG55_RS11600	COG1690	Belongs to the RtcB family
CDG55_RS11615	COG0183	Belongs to the thiolase family
CDG55_RS11635	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CDG55_RS11645	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CDG55_RS11650	COG2207	Transcriptional regulator
CDG55_RS11655	COG0183	Belongs to the thiolase family
CDG55_RS11660	COG1024	Enoyl-CoA hydratase
CDG55_RS11660	COG1250	3-hydroxyacyl-CoA dehydrogenase
CDG55_RS11685	COG2153	protein acetylation
CDG55_RS11695	COG1272	protein, Hemolysin III
CDG55_RS11700	COG0477	Major facilitator Superfamily
CDG55_RS11720	COG0450	alkyl hydroperoxide reductase
CDG55_RS11745	COG0285	dihydrofolate synthase activity
CDG55_RS11795	COG4206	TonB-dependent receptor
CDG55_RS11800	COG2096	Adenosyltransferase
CDG55_RS11820	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CDG55_RS11825	COG0745	RESPONSE REGULATOR receiver
CDG55_RS11830	COG2205	protein histidine kinase activity
CDG55_RS11840	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS11845	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS11885	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CDG55_RS11925	COG0438	transferase activity, transferring glycosyl groups
CDG55_RS11945	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CDG55_RS11950	COG5002	protein histidine kinase activity
CDG55_RS12010	COG0582	viral genome integration into host DNA
CDG55_RS12040	COG1862	Preprotein translocase
CDG55_RS12050	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CDG55_RS12105	COG2975	iron-sulfur cluster assembly
CDG55_RS12120	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CDG55_RS12125	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CDG55_RS12140	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CDG55_RS12145	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CDG55_RS12150	COG0625	glutathione transferase activity
CDG55_RS12155	COG2969	positive regulation of protein catabolic process
CDG55_RS12195	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CDG55_RS12200	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS12205	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CDG55_RS12210	COG1028	Short-chain dehydrogenase reductase Sdr
CDG55_RS12245	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS12250	COG1960	acyl-CoA dehydrogenase activity
CDG55_RS12295	COG1183	phosphatidylcholine synthase activity
CDG55_RS12300	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CDG55_RS12330	COG1196	nuclear chromosome segregation
CDG55_RS12330	COG0741	lytic transglycosylase activity
CDG55_RS12330	COG0739	heme binding
CDG55_RS12340	COG1702	phosphate starvation-inducible protein PhoH
CDG55_RS12375	COG3878	Protein conserved in bacteria
CDG55_RS12380	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CDG55_RS12415	COG0788	formyltetrahydrofolate deformylase activity
CDG55_RS12440	COG4651	solute:proton antiporter activity
CDG55_RS12440	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CDG55_RS12455	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CDG55_RS12470	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CDG55_RS12480	COG0084	hydrolase, TatD family'
CDG55_RS12485	COG0726	polysaccharide deacetylase
CDG55_RS12495	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CDG55_RS12650	COG4774	siderophore transport
CDG55_RS12655	COG0431	NADPH-dependent FMN reductase
CDG55_RS12660	COG0798	PFAM Bile acid sodium symporter
CDG55_RS12670	COG0640	Transcriptional regulator
CDG55_RS12680	COG3243	poly(R)-hydroxyalkanoic acid synthase
CDG55_RS12690	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CDG55_RS12700	COG0028	Belongs to the TPP enzyme family
CDG55_RS12730	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CDG55_RS12735	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CDG55_RS12740	COG1136	(ABC) transporter
CDG55_RS12740	COG0577	efflux transmembrane transporter activity
CDG55_RS12745	COG1538	Outer membrane efflux protein
CDG55_RS12785	COG0210	DNA helicase
CDG55_RS12820	COG2900	Belongs to the SlyX family
CDG55_RS12825	COG0488	(ABC) transporter
CDG55_RS12835	COG1560	Kdo2-lipid A biosynthetic process
CDG55_RS12890	COG0473	3-isopropylmalate dehydrogenase activity
CDG55_RS12905	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CDG55_RS12915	COG0583	DNA-binding transcription factor activity
CDG55_RS12945	COG0494	nUDIX hydrolase
CDG55_RS12955	COG0753	catalase activity
CDG55_RS12975	COG0583	DNA-binding transcription factor activity
CDG55_RS12990	COG0546	phosphoglycolate phosphatase activity
CDG55_RS13005	COG1530	ribonuclease E activity
CDG55_RS13010	COG0318	PFAM AMP-dependent synthetase and ligase
CDG55_RS13025	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CDG55_RS13035	COG0534	Mate efflux family protein
CDG55_RS13040	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CDG55_RS13075	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CDG55_RS13085	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CDG55_RS13085	COG0493	'glutamate synthase
CDG55_RS13095	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CDG55_RS13100	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CDG55_RS13115	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CDG55_RS13125	COG0644	oxidoreductase
CDG55_RS13125	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
CDG55_RS13140	COG1595	DNA-templated transcription, initiation
CDG55_RS13150	COG3220	belongs to the UPF0276 family
CDG55_RS13165	COG1279	arginine transmembrane transporter activity
CDG55_RS13170	COG0425	Belongs to the sulfur carrier protein TusA family
CDG55_RS13175	COG4535	Mg2 and Co2 transporter CorC
CDG55_RS13180	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CDG55_RS13200	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CDG55_RS13205	COG4774	siderophore transport
CDG55_RS13215	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CDG55_RS13225	COG0789	Transcriptional regulator
CDG55_RS13230	COG0598	Magnesium transport protein CorA
CDG55_RS13235	COG1301	dicarboxylic acid transport
CDG55_RS13245	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CDG55_RS13250	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CDG55_RS13255	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CDG55_RS13260	COG1074	ATP-dependent DNA helicase activity
CDG55_RS13265	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CDG55_RS13285	COG2226	methyltransferase
CDG55_RS13295	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CDG55_RS13315	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CDG55_RS13325	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CDG55_RS13330	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CDG55_RS13330	COG2111	Na H antiporter
CDG55_RS13335	COG1006	Multisubunit Na H antiporter MnhC subunit
CDG55_RS13340	COG0651	ATP synthesis coupled electron transport
CDG55_RS13345	COG1863	multisubunit Na H antiporter MnhE subunit
CDG55_RS13350	COG2212	antiporter activity
CDG55_RS13355	COG1320	monovalent cation:proton antiporter activity
CDG55_RS13360	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CDG55_RS13370	COG0195	Participates in both transcription termination and antitermination
CDG55_RS13420	COG0237	dephospho-CoA kinase activity
CDG55_RS13430	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CDG55_RS13440	COG0497	DNA recombination
CDG55_RS13450	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CDG55_RS13485	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CDG55_RS13495	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CDG55_RS13500	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CDG55_RS13505	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CDG55_RS13510	COG4977	sequence-specific DNA binding
CDG55_RS13510	COG1917	Cupin 2, conserved barrel domain protein
CDG55_RS13560	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CDG55_RS13580	COG3706	GGDEF domain
CDG55_RS13610	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CDG55_RS13630	COG0326	Molecular chaperone. Has ATPase activity
CDG55_RS13645	COG2056	Na+-H+ antiporter family
CDG55_RS13690	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CDG55_RS13710	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CDG55_RS13740	COG0546	phosphoglycolate phosphatase activity
CDG55_RS13790	COG0181	hydroxymethylbilane synthase activity
CDG55_RS13800	COG3275	phosphorelay sensor kinase activity
CDG55_RS13835	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CDG55_RS13840	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CDG55_RS13845	COG0772	Belongs to the SEDS family
CDG55_RS13875	COG4974	Belongs to the 'phage' integrase family
CDG55_RS13880	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CDG55_RS13890	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CDG55_RS13905	COG2197	response regulator
CDG55_RS13920	COG0793	Belongs to the peptidase S41A family
CDG55_RS13925	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CDG55_RS13930	COG0795	lipopolysaccharide-transporting ATPase activity
CDG55_RS13935	COG0795	lipopolysaccharide-transporting ATPase activity
CDG55_RS13970	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CDG55_RS13970	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CDG55_RS13980	COG0004	ammonium transporteR
CDG55_RS13985	COG0347	Belongs to the P(II) protein family
CDG55_RS14015	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CDG55_RS14030	COG0318	PFAM AMP-dependent synthetase and ligase
CDG55_RS14040	COG2860	membrane
CDG55_RS14050	COG1253	flavin adenine dinucleotide binding
CDG55_RS14065	COG2814	Major facilitator Superfamily
CDG55_RS14075	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CDG55_RS14080	COG0745	RESPONSE REGULATOR receiver
CDG55_RS14090	COG2205	protein histidine kinase activity
CDG55_RS14095	COG4452	Inner membrane protein CreD
CDG55_RS14125	COG2814	Major facilitator Superfamily
CDG55_RS14135	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CDG55_RS14170	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CDG55_RS14190	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CDG55_RS14195	COG3162	membrane
CDG55_RS14200	COG0784	Response regulator, receiver
CDG55_RS14200	COG2205	protein histidine kinase activity
CDG55_RS14225	COG1652	LysM domain
CDG55_RS14230	COG0758	DNA mediated transformation
CDG55_RS14255	COG0386	Belongs to the glutathione peroxidase family
CDG55_RS14270	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CDG55_RS14320	COG1121	(ABC) transporter
CDG55_RS14325	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CDG55_RS14330	COG2837	iron assimilation
CDG55_RS14380	COG0519	Catalyzes the synthesis of GMP from XMP
CDG55_RS14380	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CDG55_RS14395	COG4399	Belongs to the UPF0754 family
CDG55_RS14405	COG2259	Doxx family
CDG55_RS14410	COG0586	Pfam SNARE associated Golgi protein
CDG55_RS14425	COG1192	Involved in chromosome partitioning
CDG55_RS14435	COG0271	Belongs to the BolA IbaG family
CDG55_RS14470	COG3756	Protein conserved in bacteria
CDG55_RS14530	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CDG55_RS14540	COG4115	mRNA cleavage
CDG55_RS14585	COG3077	Addiction module antitoxin, RelB DinJ family
CDG55_RS14590	COG1253	flavin adenine dinucleotide binding
CDG55_RS14595	COG3335	DDE superfamily endonuclease
CDG55_RS14625	COG1113	amino acid transport
CDG55_RS14630	COG0251	oxidation-reduction process
CDG55_RS14655	COG0564	pseudouridine synthase activity
CDG55_RS14685	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CDG55_RS14690	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CDG55_RS14705	COG1802	Transcriptional regulator
CDG55_RS14710	COG1448	Aminotransferase
CDG55_RS14715	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CDG55_RS14720	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CDG55_RS14735	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CDG55_RS14750	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CDG55_RS14775	COG1086	Polysaccharide biosynthesis protein
CDG55_RS14785	COG0463	Glycosyl transferase, family 2
CDG55_RS14795	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
CDG55_RS14805	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CDG55_RS14845	COG3023	N-Acetylmuramoyl-L-alanine amidase
CDG55_RS14890	COG0546	phosphoglycolate phosphatase activity
CDG55_RS14895	COG1028	Short-chain dehydrogenase reductase Sdr
CDG55_RS14905	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CDG55_RS14905	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CDG55_RS14910	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CDG55_RS14915	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CDG55_RS14920	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CDG55_RS14925	COG1116	anion transmembrane transporter activity
CDG55_RS14930	COG1309	transcriptional regulator
CDG55_RS14935	COG3706	GGDEF domain
CDG55_RS14940	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CDG55_RS14945	COG0196	riboflavin kinase activity
CDG55_RS14950	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CDG55_RS14960	COG1047	Peptidyl-prolyl cis-trans
CDG55_RS14965	COG0431	NADPH-dependent FMN reductase
CDG55_RS15005	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CDG55_RS15010	COG0657	acetylesterase activity
CDG55_RS15030	COG0443	Heat shock 70 kDa protein
CDG55_RS15035	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CDG55_RS15055	COG2951	lytic endotransglycosylase activity
CDG55_RS15060	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CDG55_RS15075	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CDG55_RS15105	COG0583	DNA-binding transcription factor activity
CDG55_RS15110	COG0861	Integral membrane protein TerC family
CDG55_RS15120	COG0754	glutathionylspermidine amidase activity
CDG55_RS15130	COG0402	S-adenosylhomocysteine deaminase activity
CDG55_RS15145	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CDG55_RS15165	COG0706	membrane insertase activity