ACEE_RS00005	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ACEE_RS00010	SM00480	DNA polymerase III beta subunit
ACEE_RS00025	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACEE_RS00055	SM00363	S4 RNA-binding domain
ACEE_RS00095	SM01350	ACEE_RS00095
ACEE_RS00110	SM00771	ZipA, C-terminal domain (FtsZ-binding)
ACEE_RS00115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACEE_RS00115	SM00292	breast cancer carboxy-terminal domain
ACEE_RS00115	SM00532	Ligase N family
ACEE_RS00200	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACEE_RS00205	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00245	SM00450	Rhodanese Homology Domain
ACEE_RS00250	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00255	SM00479	ACEE_RS00255
ACEE_RS00285	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00285	SM00994	ClpX C4-type zinc finger
ACEE_RS00285	SM01086	C-terminal, D2-small domain, of ClpB protein
ACEE_RS00335	SM00028	Tetratricopeptide repeats
ACEE_RS00340	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS00340	SM00732	Likely ribonuclease with RNase H fold.
ACEE_RS00350	SM00731	SprT homologues.
ACEE_RS00370	SM00822	ACEE_RS00370
ACEE_RS00385	SM00422	helix_turn_helix, mercury resistance
ACEE_RS00410	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00415	SM00448	cheY-homologous receiver domain
ACEE_RS00415	SM00862	Transcriptional regulatory protein, C terminal
ACEE_RS00420	SM00091	PAS domain
ACEE_RS00420	SM00387	Histidine kinase-like ATPases
ACEE_RS00420	SM00388	His Kinase A (phosphoacceptor) domain
ACEE_RS00425	SM00387	Histidine kinase-like ATPases
ACEE_RS00425	SM00433	TopoisomeraseII
ACEE_RS00455	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00520	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00535	SM00421	helix_turn_helix, Lux Regulon
ACEE_RS00565	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS00620	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00630	SM00903	Flavin reductase like domain
ACEE_RS00660	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS00685	SM01209	ACEE_RS00685
ACEE_RS00685	SM01210	ACEE_RS00685
ACEE_RS00720	SM00354	helix_turn _helix lactose operon repressor
ACEE_RS00755	SM00363	S4 RNA-binding domain
ACEE_RS00805	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS00890	SM00479	ACEE_RS00890
ACEE_RS00910	SM00825	Beta-ketoacyl synthase
ACEE_RS00940	SM00028	Tetratricopeptide repeats
ACEE_RS00960	SM00830	Chorismate mutase type II
ACEE_RS01030	SM00487	DEAD-like helicases superfamily
ACEE_RS01030	SM00490	helicase superfamily c-terminal domain
ACEE_RS01045	SM00858	ACEE_RS01045
ACEE_RS01100	SM01133	ACEE_RS01100
ACEE_RS01110	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ACEE_RS01135	SM00357	Cold shock protein domain
ACEE_RS01135	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS01135	SM00959	Rho termination factor, N-terminal domain
ACEE_RS01165	SM01005	Alanine racemase, C-terminal domain
ACEE_RS01210	SM00072	Guanylate kinase homologues.
ACEE_RS01230	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS01250	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS01255	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS01285	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS01315	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACEE_RS01315	SM00465	GIY-YIG type nucleases (URI domain)
ACEE_RS01330	SM00244	prohibitin homologues
ACEE_RS01335	SM00244	prohibitin homologues
ACEE_RS01340	SM00788	Adenylosuccinate synthetase
ACEE_RS01345	SM00981	ACEE_RS01345
ACEE_RS01425	SM01323	ACEE_RS01425
ACEE_RS01440	SM00434	DNA Topoisomerase IV
ACEE_RS01445	SM01040	BRO family, N-terminal domain
ACEE_RS01450	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS01495	SM01387	ACEE_RS01495
ACEE_RS01540	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS01555	SM01126	ACEE_RS01555
ACEE_RS01570	SM01038	Beta galactosidase small chain
ACEE_RS01595	SM00387	Histidine kinase-like ATPases
ACEE_RS01595	SM00388	His Kinase A (phosphoacceptor) domain
ACEE_RS01600	SM00448	cheY-homologous receiver domain
ACEE_RS01600	SM00862	Transcriptional regulatory protein, C terminal
ACEE_RS01660	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACEE_RS01705	SM01091	Transporter associated domain
ACEE_RS01715	SM00855	Phosphoglycerate mutase family
ACEE_RS01720	SM00732	Likely ribonuclease with RNase H fold.
ACEE_RS01735	SM00244	prohibitin homologues
ACEE_RS01755	SM01060	ACEE_RS01755
ACEE_RS01760	SM00387	Histidine kinase-like ATPases
ACEE_RS01780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACEE_RS01790	SM00861	Transketolase, pyrimidine binding domain
ACEE_RS01885	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS01900	SM00912	haemagglutination activity domain
ACEE_RS01920	SM00798	AICARFT/IMPCHase bienzyme
ACEE_RS01920	SM00851	MGS-like domain
ACEE_RS01970	SM00463	Small MutS-related domain
ACEE_RS01980	SM00387	Histidine kinase-like ATPases
ACEE_RS01980	SM00388	His Kinase A (phosphoacceptor) domain
ACEE_RS01980	SM00448	cheY-homologous receiver domain
ACEE_RS02015	SM00271	DnaJ molecular chaperone homology domain
ACEE_RS02050	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACEE_RS02060	SM00840	ACEE_RS02060
ACEE_RS02065	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS02065	SM00930	ACEE_RS02065
ACEE_RS02135	SM01130	ACEE_RS02135
ACEE_RS02190	SM00642	Alpha-amylase domain
ACEE_RS02195	SM00642	Alpha-amylase domain
ACEE_RS02215	SM00562	ACEE_RS02215
ACEE_RS02230	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ACEE_RS02235	SM00363	S4 RNA-binding domain
ACEE_RS02255	SM00518	AP endonuclease family 2
ACEE_RS02275	SM00986	Uracil DNA glycosylase superfamily
ACEE_RS02275	SM00987	UreE urease accessory protein, C-terminal domain 
ACEE_RS02285	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS02285	SM00487	DEAD-like helicases superfamily
ACEE_RS02285	SM00490	helicase superfamily c-terminal domain
ACEE_RS02285	SM00847	Helicase associated domain (HA2)  Add an annotation
ACEE_RS02335	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACEE_RS02335	SM01091	Transporter associated domain
ACEE_RS02370	SM00935	Outer membrane protein (OmpH-like)
ACEE_RS02380	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACEE_RS02395	SM00849	Metallo-beta-lactamase superfamily
ACEE_RS02405	SM00014	Acid phosphatase homologues
ACEE_RS02410	SM01103	ACEE_RS02410
ACEE_RS02455	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ACEE_RS02560	SM01329	ACEE_RS02560
ACEE_RS02570	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ACEE_RS02590	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS02625	SM00881	CoA binding domain
ACEE_RS02645	SM00861	Transketolase, pyrimidine binding domain
ACEE_RS02650	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS02680	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACEE_RS02680	SM00387	Histidine kinase-like ATPases
ACEE_RS02730	SM00491	ACEE_RS02730
ACEE_RS02745	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS02760	SM01400	ACEE_RS02760
ACEE_RS02865	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS03020	SM00644	ACEE_RS03020
ACEE_RS03020	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
ACEE_RS03100	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS03135	SM00849	Metallo-beta-lactamase superfamily
ACEE_RS03185	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS03185	SM00357	Cold shock protein domain
ACEE_RS03185	SM00955	ACEE_RS03185
ACEE_RS03245	SM00098	Alkaline phosphatase homologues
ACEE_RS03250	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ACEE_RS03250	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ACEE_RS03250	SM00493	ACEE_RS03250
ACEE_RS03270	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACEE_RS03280	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS03285	SM00411	bacterial (prokaryotic) histone like domain
ACEE_RS03295	SM00028	Tetratricopeptide repeats
ACEE_RS03300	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ACEE_RS03350	SM00947	Carbonic anhydrase
ACEE_RS03355	SM00357	Cold shock protein domain
ACEE_RS03375	SM00287	Bacterial SH3 domain homologues
ACEE_RS03390	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS03475	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ACEE_RS03475	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ACEE_RS03475	SM00493	ACEE_RS03475
ACEE_RS03505	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS03560	SM00912	haemagglutination activity domain
ACEE_RS03570	SM00841	Elongation factor P, C-terminal
ACEE_RS03570	SM01185	ACEE_RS03570
ACEE_RS03590	SM00479	ACEE_RS03590
ACEE_RS03600	SM00481	DNA polymerase alpha chain like domain
ACEE_RS03620	SM00487	DEAD-like helicases superfamily
ACEE_RS03620	SM00490	helicase superfamily c-terminal domain
ACEE_RS03625	SM00028	Tetratricopeptide repeats
ACEE_RS03630	SM01011	Aminopeptidase P, N-terminal domain
ACEE_RS03645	SM00870	ACEE_RS03645
ACEE_RS03650	SM01001	AIR carboxylase
ACEE_RS03665	SM00100	Cyclic nucleotide-monophosphate binding domain
ACEE_RS03665	SM00419	helix_turn_helix, cAMP Regulatory protein
ACEE_RS03675	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ACEE_RS03870	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS03870	SM00322	K homology RNA-binding domain
ACEE_RS03900	SM00448	cheY-homologous receiver domain
ACEE_RS03900	SM00862	Transcriptional regulatory protein, C terminal
ACEE_RS03905	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ACEE_RS03905	SM00387	Histidine kinase-like ATPases
ACEE_RS03905	SM00388	His Kinase A (phosphoacceptor) domain
ACEE_RS03910	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS03950	SM00843	ACEE_RS03950
ACEE_RS03955	SM00344	helix_turn_helix ASNC type
ACEE_RS03960	SM00341	Helicase and RNase D C-terminal
ACEE_RS03960	SM00474	3'-5' exonuclease
ACEE_RS03980	SM00411	bacterial (prokaryotic) histone like domain
ACEE_RS03985	SM00873	B3/4 domain
ACEE_RS03985	SM00874	tRNA synthetase B5 domain
ACEE_RS03985	SM00896	Ferredoxin-fold anticodon binding domain
ACEE_RS04040	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACEE_RS04055	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS04065	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACEE_RS04065	SM01240	ACEE_RS04065
ACEE_RS04135	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACEE_RS04135	SM00866	ACEE_RS04135
ACEE_RS04165	SM00434	DNA Topoisomerase IV
ACEE_RS04170	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS04170	SM00322	K homology RNA-binding domain
ACEE_RS04175	SM00028	Tetratricopeptide repeats
ACEE_RS04180	SM00487	DEAD-like helicases superfamily
ACEE_RS04180	SM00490	helicase superfamily c-terminal domain
ACEE_RS04200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ACEE_RS04230	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS04250	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS04260	SM00487	DEAD-like helicases superfamily
ACEE_RS04260	SM00490	helicase superfamily c-terminal domain
ACEE_RS04345	SM00358	Double-stranded RNA binding motif
ACEE_RS04345	SM00535	Ribonuclease III family
ACEE_RS04380	SM00876	Biotin and Thiamin Synthesis associated domain
ACEE_RS04405	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS04410	SM00869	Autotransporter beta-domain
ACEE_RS04435	SM00919	Malic enzyme, NAD binding domain
ACEE_RS04435	SM01274	ACEE_RS04435
ACEE_RS04500	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ACEE_RS04500	SM00474	3'-5' exonuclease
ACEE_RS04500	SM00475	5'-3' exonuclease
ACEE_RS04500	SM00482	DNA polymerase A domain
ACEE_RS04570	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS04590	SM00925	MltA specific insert domain
ACEE_RS04660	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ACEE_RS04660	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ACEE_RS04660	SM00493	ACEE_RS04660
ACEE_RS04845	SM00857	Resolvase, N terminal domain
ACEE_RS04875	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS04895	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS04915	SM00528	Domain in histone-like proteins of HNS family
ACEE_RS04950	SM00354	helix_turn _helix lactose operon repressor
ACEE_RS04960	SM00387	Histidine kinase-like ATPases
ACEE_RS04960	SM00433	TopoisomeraseII
ACEE_RS04970	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACEE_RS04970	SM01134	ACEE_RS04970
ACEE_RS04990	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS04995	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05020	SM00855	Phosphoglycerate mutase family
ACEE_RS05045	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACEE_RS05045	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACEE_RS05070	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS05085	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05090	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05145	SM01118	ACEE_RS05145
ACEE_RS05225	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05235	SM00116	Domain in cystathionine beta-synthase and other proteins.
ACEE_RS05295	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05295	SM00464	Found in ATP-dependent protease La (LON)
ACEE_RS05305	SM00954	Region found in RelA / SpoT proteins
ACEE_RS05315	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05335	SM00650	Ribosomal RNA adenine dimethylases
ACEE_RS05370	SM00917	LeuA allosteric (dimerisation) domain
ACEE_RS05405	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ACEE_RS05415	SM00478	endonuclease III
ACEE_RS05415	SM00525	ACEE_RS05415
ACEE_RS05445	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ACEE_RS05485	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05535	SM00937	ACEE_RS05535
ACEE_RS05560	SM00644	ACEE_RS05560
ACEE_RS05570	SM00487	DEAD-like helicases superfamily
ACEE_RS05570	SM00490	helicase superfamily c-terminal domain
ACEE_RS05580	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACEE_RS05600	SM00852	Probable molybdopterin binding domain
ACEE_RS05610	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05630	SM00271	DnaJ molecular chaperone homology domain
ACEE_RS05690	SM00883	Chaperonin 10 Kd subunit
ACEE_RS05710	SM00957	SecA DEAD-like domain
ACEE_RS05710	SM00958	SecA preprotein cross-linking domain
ACEE_RS05745	SM00354	helix_turn _helix lactose operon repressor
ACEE_RS05760	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05775	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05780	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACEE_RS05795	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05845	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05845	SM01086	C-terminal, D2-small domain, of ClpB protein
ACEE_RS05910	SM00481	DNA polymerase alpha chain like domain
ACEE_RS05915	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS05935	SM00563	Phosphate acyltransferases
ACEE_RS05945	SM00927	DNA mismatch repair enzyme MutH
ACEE_RS05965	SM01192	ACEE_RS05965
ACEE_RS05965	SM01193	ACEE_RS05965
ACEE_RS05980	SM00341	Helicase and RNase D C-terminal
ACEE_RS05980	SM00487	DEAD-like helicases superfamily
ACEE_RS05980	SM00490	helicase superfamily c-terminal domain
ACEE_RS05980	SM00956	ACEE_RS05980
ACEE_RS05985	SM01219	ACEE_RS05985
ACEE_RS05990	SM00954	Region found in RelA / SpoT proteins
ACEE_RS06005	SM00363	S4 RNA-binding domain
ACEE_RS06025	SM00318	Staphylococcal nuclease homologues
ACEE_RS06065	SM00479	ACEE_RS06065
ACEE_RS06080	SM00257	Lysin motif
ACEE_RS06080	SM00646	ACEE_RS06080
ACEE_RS06095	SM00855	Phosphoglycerate mutase family
ACEE_RS06115	SM00830	Chorismate mutase type II
ACEE_RS06120	SM00861	Transketolase, pyrimidine binding domain
ACEE_RS06130	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ACEE_RS06250	SM01022	ACEE_RS06250
ACEE_RS06260	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS06300	SM00900	ACEE_RS06300
ACEE_RS06335	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS06390	SM00764	Citrate lyase ligase C-terminal domain
ACEE_RS06425	SM00900	ACEE_RS06425
ACEE_RS06525	SM00870	ACEE_RS06525
ACEE_RS06585	SM00849	Metallo-beta-lactamase superfamily
ACEE_RS06600	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ACEE_RS06600	SM00245	tail specific protease
ACEE_RS06605	SM00945	ProQ/FINO family
ACEE_RS06610	SM00357	Cold shock protein domain
ACEE_RS06615	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS06615	SM00876	Biotin and Thiamin Synthesis associated domain
ACEE_RS06630	SM00411	bacterial (prokaryotic) histone like domain
ACEE_RS06660	SM00346	helix_turn_helix isocitrate lyase regulation
ACEE_RS06730	SM00860	SMI1 / KNR4 family
ACEE_RS06755	SM00912	haemagglutination activity domain
ACEE_RS06890	SM01120	ACEE_RS06890
ACEE_RS06905	SM00450	Rhodanese Homology Domain
ACEE_RS06930	SM00493	ACEE_RS06930
ACEE_RS06955	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS06960	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS07015	SM00981	ACEE_RS07015
ACEE_RS07020	SM00421	helix_turn_helix, Lux Regulon
ACEE_RS07020	SM00448	cheY-homologous receiver domain
ACEE_RS07025	SM00642	Alpha-amylase domain
ACEE_RS07085	SM00448	cheY-homologous receiver domain
ACEE_RS07085	SM00862	Transcriptional regulatory protein, C terminal
ACEE_RS07095	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS07100	SM00904	Riboflavin kinase
ACEE_RS07110	SM00155	Phospholipase D. Active site motifs.
ACEE_RS07115	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ACEE_RS07130	SM00836	DALR anticodon binding domain
ACEE_RS07130	SM01016	Arginyl tRNA synthetase N terminal dom
ACEE_RS07200	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS07215	SM00864	Tubulin/FtsZ family, GTPase domain
ACEE_RS07215	SM00865	Tubulin/FtsZ family, C-terminal domain
ACEE_RS07220	SM00842	Cell division protein FtsA
ACEE_RS07315	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS07340	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS07360	SM00640	Glycosyl hydrolases family 32
ACEE_RS07365	SM00354	helix_turn _helix lactose operon repressor
ACEE_RS07405	SM00487	DEAD-like helicases superfamily
ACEE_RS07405	SM00490	helicase superfamily c-terminal domain
ACEE_RS07405	SM00982	ACEE_RS07405
ACEE_RS07405	SM01058	CarD-like/TRCF domain
ACEE_RS07420	SM01207	ACEE_RS07420
ACEE_RS07425	SM00905	Dihydroneopterin aldolase
ACEE_RS07470	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ACEE_RS07475	SM00822	ACEE_RS07475
ACEE_RS07485	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ACEE_RS07485	SM01232	ACEE_RS07485
ACEE_RS07495	SM01004	Delta-aminolevulinic acid dehydratase
ACEE_RS07600	SM00100	Cyclic nucleotide-monophosphate binding domain
ACEE_RS07600	SM00419	helix_turn_helix, cAMP Regulatory protein
ACEE_RS07625	SM00853	MutL C terminal dimerisation domain
ACEE_RS07625	SM01340	ACEE_RS07625
ACEE_RS07660	SM00458	Ricin-type beta-trefoil
ACEE_RS07695	SM01230	ACEE_RS07695
ACEE_RS07700	SM01234	ACEE_RS07700
ACEE_RS07745	SM00257	Lysin motif
ACEE_RS07755	SM00257	Lysin motif
ACEE_RS07780	SM00869	Autotransporter beta-domain
ACEE_RS07875	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS07885	SM00869	Autotransporter beta-domain
ACEE_RS07900	SM00460	Transglutaminase/protease-like homologues
ACEE_RS07920	SM00342	helix_turn_helix, arabinose operon control protein
ACEE_RS07945	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS07970	SM00248	ankyrin repeats
ACEE_RS07970	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS07990	SM00342	helix_turn_helix, arabinose operon control protein
ACEE_RS08000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ACEE_RS08015	SM00849	Metallo-beta-lactamase superfamily
ACEE_RS08080	SM00342	helix_turn_helix, arabinose operon control protein
ACEE_RS08120	SM00882	Coenzyme A transferase
ACEE_RS08125	SM00882	Coenzyme A transferase
ACEE_RS08170	SM00878	Biotin carboxylase C-terminal domain
ACEE_RS08240	SM00363	S4 RNA-binding domain
ACEE_RS08315	SM00869	Autotransporter beta-domain
ACEE_RS08365	SM00271	DnaJ molecular chaperone homology domain
ACEE_RS08390	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS08410	SM00342	helix_turn_helix, arabinose operon control protein
ACEE_RS08465	SM01057	Eukaryotic-type carbonic anhydrase
ACEE_RS08480	SM00344	helix_turn_helix ASNC type
ACEE_RS08515	SM00487	DEAD-like helicases superfamily
ACEE_RS08515	SM00490	helicase superfamily c-terminal domain
ACEE_RS08545	SM01409	ACEE_RS08545
ACEE_RS08550	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ACEE_RS08550	SM00954	Region found in RelA / SpoT proteins
ACEE_RS08580	SM00823	Phosphopantetheine attachment site
ACEE_RS08700	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS08715	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ACEE_RS08745	SM00662	RNA polymerases D
ACEE_RS08750	SM00363	S4 RNA-binding domain
ACEE_RS08750	SM01390	ACEE_RS08750
ACEE_RS08815	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ACEE_RS08820	SM01374	ACEE_RS08820
ACEE_RS08840	SM00322	K homology RNA-binding domain
ACEE_RS08855	SM01382	ACEE_RS08855
ACEE_RS08855	SM01383	ACEE_RS08855
ACEE_RS08875	SM01403	ACEE_RS08875
ACEE_RS09050	SM00984	UDP binding domain
ACEE_RS09080	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09105	SM01130	ACEE_RS09105
ACEE_RS09140	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09160	SM00663	RNA polymerase I subunit A N-terminus
ACEE_RS09185	SM00649	Ribosomal protein L11/L12
ACEE_RS09190	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ACEE_RS09190	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ACEE_RS09270	SM00988	UreE urease accessory protein, N-terminal domain
ACEE_RS09300	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09365	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACEE_RS09365	SM01134	ACEE_RS09365
ACEE_RS09380	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS09455	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09500	SM01228	ACEE_RS09500
ACEE_RS09540	SM00354	helix_turn _helix lactose operon repressor
ACEE_RS09545	SM00354	helix_turn _helix lactose operon repressor
ACEE_RS09555	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09580	SM00062	Bacterial periplasmic substrate-binding proteins
ACEE_RS09590	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09595	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ACEE_RS09595	SM00534	ATPase domain of DNA mismatch repair MUTS family
ACEE_RS09625	SM00936	Penicillin-binding protein 5, C-terminal domain 
ACEE_RS09640	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS09685	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ACEE_RS09705	SM01007	Class II Aldolase and Adducin N-terminal domain
ACEE_RS09715	SM00420	helix_turn_helix, Deoxyribose operon repressor
ACEE_RS09715	SM01134	ACEE_RS09715
ACEE_RS09735	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ACEE_RS09755	SM00062	Bacterial periplasmic substrate-binding proteins
ACEE_RS09755	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACEE_RS09760	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09780	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09805	SM01211	ACEE_RS09805
ACEE_RS09890	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS09925	SM00829	Enoylreductase
ACEE_RS09935	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS09960	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS09985	SM00938	Nitrogen regulatory protein P-II
ACEE_RS09995	SM00852	Probable molybdopterin binding domain
ACEE_RS10075	SM00563	Phosphate acyltransferases
ACEE_RS10165	SM00729	Elongator protein 3, MiaB family, Radical SAM
ACEE_RS10185	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ACEE_RS10185	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ACEE_RS10190	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS10235	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS10235	SM01086	C-terminal, D2-small domain, of ClpB protein
ACEE_RS10255	SM00478	endonuclease III
ACEE_RS10255	SM00525	ACEE_RS10255
ACEE_RS10290	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS10290	SM00962	SRP54-type protein, GTPase domain
ACEE_RS10290	SM00963	SRP54-type protein, helical bundle domain
ACEE_RS10365	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ACEE_RS10410	SM00422	helix_turn_helix, mercury resistance
ACEE_RS10460	SM00838	Elongation factor G C-terminus
ACEE_RS10460	SM00889	Elongation factor G, domain IV
ACEE_RS10535	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS10565	SM00257	Lysin motif
ACEE_RS10575	SM00450	Rhodanese Homology Domain
ACEE_RS10590	SM00971	Serine acetyltransferase, N-terminal
ACEE_RS10680	SM00400	zinc finger
ACEE_RS10680	SM00493	ACEE_RS10680
ACEE_RS10680	SM00766	DNA primase DnaG DnaB-binding
ACEE_RS10695	SM01235	ACEE_RS10695
ACEE_RS10700	SM01152	ACEE_RS10700
ACEE_RS10745	SM01091	Transporter associated domain
ACEE_RS10800	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS10810	SM00363	S4 RNA-binding domain
ACEE_RS10820	SM00316	Ribosomal protein S1-like RNA-binding domain
ACEE_RS10820	SM00357	Cold shock protein domain
ACEE_RS10820	SM00955	ACEE_RS10820
ACEE_RS10865	SM00829	Enoylreductase
ACEE_RS10875	SM00487	DEAD-like helicases superfamily
ACEE_RS10950	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS11000	SM00062	Bacterial periplasmic substrate-binding proteins
ACEE_RS11005	SM00749	bacterial OsmY and nodulation domain
ACEE_RS11045	SM00530	Helix-turn-helix XRE-family like proteins 
ACEE_RS11060	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS11065	SM00062	Bacterial periplasmic substrate-binding proteins
ACEE_RS11065	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ACEE_RS11085	SM00903	Flavin reductase like domain
ACEE_RS11100	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS11100	SM00962	SRP54-type protein, GTPase domain
ACEE_RS11100	SM00963	SRP54-type protein, helical bundle domain
ACEE_RS11105	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS11155	SM00487	DEAD-like helicases superfamily
ACEE_RS11155	SM00490	helicase superfamily c-terminal domain
ACEE_RS11180	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS11225	SM01321	ACEE_RS11225
ACEE_RS11290	SM00382	ATPases associated with a variety of cellular activities
ACEE_RS11325	SM00937	ACEE_RS11325
ACEE_RS11380	SM00869	Autotransporter beta-domain
