locus-tag	class	description
D1106_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
D1106_RS00010	COG0592	DNA-directed DNA polymerase activity
D1106_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
D1106_RS00025	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D1106_RS00035	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
D1106_RS00040	COG0616	signal peptide processing
D1106_RS00055	COG3116	cell division
D1106_RS00060	COG0768	penicillin binding
D1106_RS00065	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D1106_RS00070	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
D1106_RS00080	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
D1106_RS00085	COG0772	Belongs to the SEDS family
D1106_RS00095	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
D1106_RS00100	COG1181	Belongs to the D-alanine--D-alanine ligase family
D1106_RS00110	COG0849	cell division
D1106_RS00115	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
D1106_RS00120	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
D1106_RS00125	COG0497	DNA recombination
D1106_RS00135	COG4172	Belongs to the ABC transporter superfamily
D1106_RS00140	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D1106_RS00145	COG0601	transmembrane transport
D1106_RS00170	COG0193	aminoacyl-tRNA hydrolase activity
D1106_RS00175	COG0012	GTP binding
D1106_RS00180	COG2020	methyltransferase activity
D1106_RS00190	COG3133	Outer membrane lipoprotein
D1106_RS00195	COG3102	Protein conserved in bacteria
D1106_RS00200	COG0018	arginyl-trna synthetase
D1106_RS00215	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D1106_RS00220	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D1106_RS00225	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
D1106_RS00230	COG0196	riboflavin kinase activity
D1106_RS00235	COG3172	ATPase kinase involved in NAD metabolism
D1106_RS00240	COG2129	metallophosphoesterase
D1106_RS00245	COG0745	RESPONSE REGULATOR receiver
D1106_RS00255	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
D1106_RS00260	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
D1106_RS00270	COG1217	gtp-binding protein TYPA
D1106_RS00275	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D1106_RS00280	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
D1106_RS00285	COG1561	YicC-like family, N-terminal region
D1106_RS00290	COG0354	folic acid binding
D1106_RS00295	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D1106_RS00300	COG2197	response regulator
D1106_RS00305	COG0116	Belongs to the methyltransferase superfamily
D1106_RS00305	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
D1106_RS00310	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
D1106_RS00345	COG0747	negative chemotaxis
D1106_RS00350	COG0747	negative chemotaxis
D1106_RS00355	COG0601	transmembrane transport
D1106_RS00360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D1106_RS00365	COG0444	Belongs to the ABC transporter superfamily
D1106_RS00370	COG4608	Belongs to the ABC transporter superfamily
D1106_RS00385	COG0251	oxidation-reduction process
D1106_RS00390	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D1106_RS00395	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
D1106_RS00400	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
D1106_RS00405	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
D1106_RS00410	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
D1106_RS00415	COG0848	biopolymer transport protein
D1106_RS00420	COG0811	peptide transport
D1106_RS00430	COG3118	belongs to the thioredoxin family
D1106_RS00435	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D1106_RS00435	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D1106_RS00435	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
D1106_RS00440	COG1461	Dihydroxyacetone kinase
D1106_RS00445	COG2376	Dihydroxyacetone kinase
D1106_RS00450	COG0492	ferredoxin-NADP+ reductase activity
D1106_RS00460	COG3753	Protein conserved in bacteria
D1106_RS00480	COG3030	protein affecting phage T7 exclusion by the F plasmid
D1106_RS00485	COG0006	proline dipeptidase activity
D1106_RS00495	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
D1106_RS00515	COG0129	dihydroxy-acid dehydratase activity
D1106_RS00520	COG3978	acetolactate synthase activity
D1106_RS00535	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
D1106_RS00540	COG0437	4 iron, 4 sulfur cluster binding
D1106_RS00545	COG3301	Polysulphide reductase, NrfD
D1106_RS00565	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D1106_RS00570	COG1414	Transcriptional regulator
D1106_RS00575	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
D1106_RS00585	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
D1106_RS00595	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
D1106_RS00600	COG3068	Protein conserved in bacteria
D1106_RS00625	COG1278	Cold shock
D1106_RS00630	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
D1106_RS00635	COG0793	Belongs to the peptidase S41A family
D1106_RS00640	COG2989	Protein conserved in bacteria
D1106_RS00645	COG3108	Peptidase M15
D1106_RS00650	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D1106_RS00665	COG0537	adenosine 5'-monophosphoramidase activity
D1106_RS00670	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D1106_RS00675	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D1106_RS00685	COG1162	GTPase activity
D1106_RS00690	COG0583	DNA-binding transcription factor activity
D1106_RS00695	COG1011	Hydrolase
D1106_RS00700	COG0583	DNA-binding transcription factor activity
D1106_RS00710	COG0252	asparaginase activity
D1106_RS00720	COG5413	integral membrane protein
D1106_RS00735	COG3835	regulator
D1106_RS00740	COG2610	gluconate transmembrane transporter activity
D1106_RS00745	COG1929	Belongs to the glycerate kinase type-1 family
D1106_RS00750	COG1254	Belongs to the acylphosphatase family
D1106_RS00755	COG3593	DNA synthesis involved in DNA repair
D1106_RS00760	COG1611	Belongs to the LOG family
D1106_RS00765	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D1106_RS00775	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D1106_RS00780	COG0316	Belongs to the HesB IscA family
D1106_RS00780	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
D1106_RS00785	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D1106_RS00790	COG1805	sodium ion transport
D1106_RS00795	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D1106_RS00800	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D1106_RS00805	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
D1106_RS00810	COG2871	sodium ion transport
D1106_RS00815	COG1477	protein flavinylation
D1106_RS00820	COG2991	Protein conserved in bacteria
D1106_RS00830	COG2814	Major facilitator Superfamily
D1106_RS00835	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D1106_RS00845	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D1106_RS00860	COG4657	Part of a membrane complex involved in electron transport
D1106_RS00865	COG2878	Part of a membrane complex involved in electron transport
D1106_RS00870	COG4656	Part of a membrane complex involved in electron transport
D1106_RS00880	COG4658	electron transport chain
D1106_RS00895	COG1560	Kdo2-lipid A biosynthetic process
D1106_RS00900	COG0402	S-adenosylhomocysteine deaminase activity
D1106_RS00905	COG4143	(ABC) transporter
D1106_RS00910	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D1106_RS00915	COG0617	tRNA 3'-terminal CCA addition
D1106_RS00920	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D1106_RS00930	COG2911	Protein conserved in bacteria
D1106_RS00940	COG0346	lactoylglutathione lyase activity
D1106_RS00945	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D1106_RS00955	COG1605	Chorismate mutase
D1106_RS00955	COG0287	Prephenate dehydrogenase
D1106_RS00960	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D1106_RS00965	COG0859	PFAM glycosyl transferase family 9
D1106_RS00970	COG0469	pyruvate kinase activity
D1106_RS00975	COG2062	phosphohistidine phosphatase, SixA
D1106_RS00980	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D1106_RS00985	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
D1106_RS00990	COG0733	neurotransmitter:sodium symporter activity
D1106_RS00995	COG0338	D12 class N6 adenine-specific DNA methyltransferase
D1106_RS01000	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
D1106_RS01005	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
D1106_RS01010	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
D1106_RS01015	COG4972	Pilus assembly protein
D1106_RS01035	COG4796	Type ii and iii secretion system protein
D1106_RS01040	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
D1106_RS01045	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
D1106_RS01050	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D1106_RS01055	COG1280	lysine exporter protein (LysE YggA)
D1106_RS01060	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D1106_RS01070	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
D1106_RS01085	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
D1106_RS01140	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
D1106_RS01145	COG0291	Belongs to the bacterial ribosomal protein bL35 family
D1106_RS01150	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
D1106_RS01165	COG1253	flavin adenine dinucleotide binding
D1106_RS01170	COG0564	pseudouridine synthase activity
D1106_RS01175	COG0588	phosphoglycerate mutase activity
D1106_RS01180	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
D1106_RS01185	COG1678	Uncharacterized ACR, COG1678
D1106_RS01190	COG1385	rRNA (uridine-N3-)-methyltransferase activity
D1106_RS01200	COG0271	Belongs to the BolA IbaG family
D1106_RS01225	COG0653	protein targeting
D1106_RS01240	COG0494	nUDIX hydrolase
D1106_RS01245	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
D1106_RS01255	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D1106_RS01270	COG1629	transport
D1106_RS01270	COG4771	TonB-dependent receptor
D1106_RS01285	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
D1106_RS01290	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D1106_RS01295	COG0083	homoserine kinase activity
D1106_RS01300	COG0460	homoserine dehydrogenase
D1106_RS01300	COG0527	aspartate kinase activity
D1106_RS01305	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
D1106_RS01310	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D1106_RS01315	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D1106_RS01345	COG2195	Cleaves the N-terminal amino acid of tripeptides
D1106_RS01350	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
D1106_RS01355	COG0194	GDP metabolic process
D1106_RS01360	COG1538	Outer membrane efflux protein
D1106_RS01365	COG2914	Belongs to the UPF0125 (RnfH) family
D1106_RS01370	COG2867	negative regulation of translational initiation
D1106_RS01375	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
D1106_RS01380	COG4149	molybdate abc transporter
D1106_RS01385	COG0725	ABC transporter, periplasmic molybdate-binding protein
D1106_RS01390	COG0842	Transport permease protein
D1106_RS01395	COG1131	(ABC) transporter
D1106_RS01400	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
D1106_RS01405	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
D1106_RS01415	COG0251	oxidation-reduction process
D1106_RS01420	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D1106_RS01425	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D1106_RS01430	COG1121	(ABC) transporter
D1106_RS01440	COG2920	part of a sulfur-relay system
D1106_RS01445	COG0670	Belongs to the BI1 family
D1106_RS01450	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D1106_RS01460	COG0322	excinuclease ABC activity
D1106_RS01465	COG0084	hydrolase, TatD family'
D1106_RS01470	COG0210	DNA helicase
D1106_RS01475	COG3842	ATPase activity
D1106_RS01480	COG1176	ABC-type spermidine putrescine transport system, permease component I
D1106_RS01485	COG1177	transmembrane transport
D1106_RS01490	COG0632	four-way junction helicase activity
D1106_RS01495	COG2255	four-way junction helicase activity
D1106_RS01500	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D1106_RS01505	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D1106_RS01540	COG0488	(ABC) transporter
D1106_RS01545	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
D1106_RS01555	COG1271	oxidase subunit
D1106_RS01560	COG1294	oxidase, subunit
D1106_RS01575	COG0824	Thioesterase
D1106_RS01580	COG0811	peptide transport
D1106_RS01585	COG0848	biopolymer transport protein
D1106_RS01590	COG3064	Membrane
D1106_RS01590	COG3064	Membrane
D1106_RS01595	COG0823	Involved in the tonB-independent uptake of proteins
D1106_RS01610	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
D1106_RS01615	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D1106_RS01625	COG0488	(ABC) transporter
D1106_RS01635	COG0303	'Molybdopterin
D1106_RS01640	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D1106_RS01650	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D1106_RS01655	COG0232	Belongs to the dGTPase family. Type 2 subfamily
D1106_RS01665	COG0564	pseudouridine synthase activity
D1106_RS01670	COG3023	N-Acetylmuramoyl-L-alanine amidase
D1106_RS01675	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
D1106_RS01680	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
D1106_RS01685	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D1106_RS01690	COG0626	cystathionine gamma-synthase activity
D1106_RS01695	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
D1106_RS01710	COG1702	phosphate starvation-inducible protein PhoH
D1106_RS01735	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D1106_RS01755	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D1106_RS01765	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D1106_RS01770	COG1137	ATPase activity
D1106_RS01775	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
D1106_RS01790	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
D1106_RS01800	COG1704	LemA family
D1106_RS01805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D1106_RS01805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D1106_RS01805	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
D1106_RS01810	COG1105	Belongs to the carbohydrate kinase PfkB family
D1106_RS01815	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D1106_RS01815	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D1106_RS01825	COG1523	belongs to the glycosyl hydrolase 13 family
D1106_RS01830	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D1106_RS01835	COG0297	glycogen (starch) synthase activity
D1106_RS01840	COG0058	SHG alpha-glucan phosphorylase activity
D1106_RS01865	COG1187	pseudouridine synthase activity
D1106_RS01870	COG2814	Major facilitator Superfamily
D1106_RS01880	COG3381	protein complex oligomerization
D1106_RS01890	COG0791	NLP P60 protein
D1106_RS01895	COG2932	Transcriptional regulator
D1106_RS01900	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
D1106_RS01905	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
D1106_RS01910	COG2990	Protein conserved in bacteria
D1106_RS01920	COG1643	Atp-dependent helicase
D1106_RS01925	COG2707	UPF0756 membrane protein
D1106_RS01930	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
D1106_RS01935	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D1106_RS01940	COG0534	Mate efflux family protein
D1106_RS01945	COG1074	ATP-dependent DNA helicase activity
D1106_RS01950	COG0815	Transfers the fatty acyl group on membrane lipoproteins
D1106_RS01955	COG4535	Mg2 and Co2 transporter CorC
D1106_RS01965	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
D1106_RS01970	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
D1106_RS01975	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
D1106_RS01980	COG2271	Major facilitator Superfamily
D1106_RS01985	COG0584	glycerophosphoryl diester phosphodiesterase
D1106_RS01990	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D1106_RS01995	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
D1106_RS02000	COG0247	lactate metabolic process
D1106_RS02030	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
D1106_RS02030	COG0517	IMP dehydrogenase activity
D1106_RS02040	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
D1106_RS02045	COG0385	Bile acid
D1106_RS02050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D1106_RS02055	COG0561	phosphatase activity
D1106_RS02065	COG1595	DNA-templated transcription, initiation
D1106_RS02070	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
D1106_RS02080	COG0318	PFAM AMP-dependent synthetase and ligase
D1106_RS02085	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
D1106_RS02090	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
D1106_RS02095	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D1106_RS02100	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
D1106_RS02120	COG1160	GTP binding
D1106_RS02130	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D1106_RS02145	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
D1106_RS02150	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
D1106_RS02165	COG0750	zinc metalloprotease
D1106_RS02170	COG0575	Belongs to the CDS family
D1106_RS02175	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
D1106_RS02180	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D1106_RS02190	COG0671	phosphoesterase, PA-phosphatase related
D1106_RS02195	COG1534	Rna-binding protein
D1106_RS02200	COG0463	Glycosyl transferase, family 2
D1106_RS02205	COG1686	Belongs to the peptidase S11 family
D1106_RS02210	COG0859	PFAM glycosyl transferase family 9
D1106_RS02220	COG0328	RNA-DNA hybrid ribonuclease activity
D1106_RS02225	COG1286	toxin biosynthetic process
D1106_RS02230	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
D1106_RS02240	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
D1106_RS02245	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D1106_RS02255	COG0251	oxidation-reduction process
D1106_RS02260	COG1496	oxidoreductase activity
D1106_RS02270	COG5645	(Lipo)protein
D1106_RS02285	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D1106_RS02295	COG1792	Involved in formation and maintenance of cell shape
D1106_RS02300	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
D1106_RS02305	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
D1106_RS02310	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D1106_RS02315	COG0121	glutamine amidotransferase
D1106_RS02320	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
D1106_RS02325	COG2949	membrane
D1106_RS02335	COG1556	Lactate utilization protein
D1106_RS02340	COG1139	Iron-sulfur cluster binding protein
D1106_RS02345	COG0247	lactate metabolic process
D1106_RS02350	COG1620	l-lactate permease
D1106_RS02355	COG2916	Histone family protein nucleoid-structuring protein H-NS
D1106_RS02360	COG1757	Na H antiporter
D1106_RS02365	COG1879	ABC-type sugar transport system periplasmic component
D1106_RS02370	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
D1106_RS02380	COG2990	Protein conserved in bacteria
D1106_RS02385	COG0508	dehydrogenase complex catalyzes the overall conversion of
D1106_RS02390	COG0567	Dehydrogenase, E1 component
D1106_RS02395	COG1121	(ABC) transporter
D1106_RS02400	COG0739	heme binding
D1106_RS02405	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D1106_RS02410	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D1106_RS02420	COG0561	phosphatase activity
D1106_RS02425	COG3850	Histidine kinase
D1106_RS02435	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
D1106_RS02445	COG2759	Belongs to the formate--tetrahydrofolate ligase family
D1106_RS02455	COG4221	oxidoreductase activity
D1106_RS02480	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D1106_RS02480	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D1106_RS02495	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
D1106_RS02505	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D1106_RS02510	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D1106_RS02535	COG0640	Transcriptional regulator
D1106_RS02545	COG0189	ligase activity
D1106_RS02550	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D1106_RS02555	COG0281	malic enzyme
D1106_RS02555	COG0280	phosphate acetyltransferase
D1106_RS02560	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
D1106_RS02625	COG3723	Recombinational DNA repair protein, rece pathway
D1106_RS02690	COG1484	DNA-dependent DNA replication
D1106_RS02750	COG3772	lysozyme
D1106_RS02785	COG0740	serine-type endopeptidase activity
D1106_RS02885	COG3683	transport system, periplasmic component
D1106_RS02890	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
D1106_RS02895	COG1115	amino acid carrier protein
D1106_RS02905	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D1106_RS02910	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D1106_RS02915	COG2104	thiamine diphosphate biosynthetic process
D1106_RS02925	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
D1106_RS02930	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
D1106_RS02935	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D1106_RS02950	COG0481	GTPase activity
D1106_RS02955	COG0681	Belongs to the peptidase S26 family
D1106_RS02960	COG0571	ribonuclease III activity
D1106_RS02965	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
D1106_RS03055	COG0433	COG0433 Predicted ATPase
D1106_RS03060	COG1840	ABC-type Fe3 transport system, periplasmic component
D1106_RS03080	COG4178	(ABC) transporter
D1106_RS03090	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
D1106_RS03095	COG2194	sulfuric ester hydrolase activity
D1106_RS03100	COG0528	UMP kinase activity
D1106_RS03105	COG0233	cytoplasmic translational termination
D1106_RS03110	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D1106_RS03125	COG0590	tRNA wobble adenosine to inosine editing
D1106_RS03130	COG0513	Belongs to the DEAD box helicase family
D1106_RS03135	COG4785	May be involved in cell division
D1106_RS03140	COG1185	polyribonucleotide nucleotidyltransferase activity
D1106_RS03145	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D1106_RS03160	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
D1106_RS03175	COG3083	sulfuric ester hydrolase activity
D1106_RS03180	COG3082	Protein of unknown function (DUF1414)
D1106_RS03185	COG1309	transcriptional regulator
D1106_RS03190	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D1106_RS03195	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D1106_RS03200	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
D1106_RS03210	COG3955	Domain of unknown function (DUF1919)
D1106_RS03215	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D1106_RS03230	COG0517	IMP dehydrogenase activity
D1106_RS03230	COG0516	GMP reductase activity
D1106_RS03235	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
D1106_RS03240	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
D1106_RS03245	COG0814	amino acid
D1106_RS03250	COG0814	amino acid
D1106_RS03260	COG3105	Protein conserved in bacteria
D1106_RS03265	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
D1106_RS03290	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
D1106_RS03295	COG1823	symporter activity
D1106_RS03300	COG0778	Nitroreductase
D1106_RS03310	COG0072	phenylalanine-tRNA ligase activity
D1106_RS03315	COG0776	regulation of translation
D1106_RS03320	COG0791	NLP P60 protein
D1106_RS03330	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
D1106_RS03335	COG1940	carbohydrate kinase activity
D1106_RS03335	COG1846	Transcriptional regulator
D1106_RS03340	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
D1106_RS03345	COG1522	sequence-specific DNA binding
D1106_RS03350	COG1674	ftsk spoiiie
D1106_RS03355	COG2321	neutral zinc metallopeptidase
D1106_RS03360	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D1106_RS03365	COG1214	PFAM Peptidase M22, glycoprotease
D1106_RS03370	COG1435	thymidine kinase activity
D1106_RS03375	COG3074	FtsZ-dependent cytokinesis
D1106_RS03380	COG1494	fructose-1,6-bisphosphatase
D1106_RS03385	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
D1106_RS03390	COG0577	efflux transmembrane transporter activity
D1106_RS03390	COG1136	(ABC) transporter
D1106_RS03395	COG2205	protein histidine kinase activity
D1106_RS03400	COG0745	RESPONSE REGULATOR receiver
D1106_RS03405	COG3956	TIGRFAM MazG family protein
D1106_RS03415	COG0285	dihydrofolate synthase activity
D1106_RS03425	COG0779	Required for maturation of 30S ribosomal subunits
D1106_RS03430	COG0195	Participates in both transcription termination and antitermination
D1106_RS03435	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
D1106_RS03440	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
D1106_RS03445	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
D1106_RS03450	COG2951	lytic endotransglycosylase activity
D1106_RS03460	COG0857	belongs to the CobB CobQ family
D1106_RS03460	COG0280	phosphate acetyltransferase
D1106_RS03490	COG1210	Utp--glucose-1-phosphate uridylyltransferase
D1106_RS03495	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D1106_RS03500	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
D1106_RS03510	COG0589	response to stress
D1106_RS03520	COG2969	positive regulation of protein catabolic process
D1106_RS03525	COG0625	glutathione transferase activity
D1106_RS03530	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
D1106_RS03540	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
D1106_RS03545	COG1448	Aminotransferase
D1106_RS03550	COG0006	proline dipeptidase activity
D1106_RS03560	COG0556	nucleotide-excision repair
D1106_RS03565	COG2822	iron ion transport
D1106_RS03570	COG2837	iron assimilation
D1106_RS03580	COG0613	PHP domain protein
D1106_RS03590	COG2925	Exonuclease
D1106_RS03595	COG0038	chloride channel
D1106_RS03605	COG1509	lysine 2,3-aminomutase activity
D1106_RS03615	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
D1106_RS03620	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
D1106_RS03630	COG2814	Major facilitator Superfamily
D1106_RS03635	COG0741	lytic transglycosylase activity
D1106_RS03640	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
D1106_RS03645	COG0626	cystathionine gamma-synthase activity
D1106_RS03650	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
D1106_RS03655	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
D1106_RS03660	COG2363	Small membrane protein
D1106_RS03665	COG0277	FAD linked oxidase domain protein
D1106_RS03670	COG0243	molybdopterin cofactor binding
D1106_RS03675	COG3005	denitrification pathway
D1106_RS03685	COG0315	cyclic pyranopterin monophosphate synthase activity
D1106_RS03690	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
D1106_RS03695	COG0314	molybdopterin synthase activity
D1106_RS03700	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
D1106_RS03705	COG1444	tRNA N-acetyltransferase activity
D1106_RS03715	COG0583	DNA-binding transcription factor activity
D1106_RS03740	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
D1106_RS03745	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
D1106_RS03760	COG1737	Transcriptional regulator
D1106_RS03765	COG2731	YhcH YjgK YiaL family protein
D1106_RS03770	COG0248	Ppx GppA phosphatase
D1106_RS03775	COG2926	Belongs to the UPF0265 family
D1106_RS03780	COG0527	aspartate kinase activity
D1106_RS03785	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
D1106_RS03790	COG3100	YcgL domain-containing protein
D1106_RS03795	COG0305	Participates in initiation and elongation during chromosome replication
D1106_RS03800	COG4607	ABC-type enterochelin transport system periplasmic component
D1106_RS03805	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D1106_RS03810	COG4605	iron ion homeostasis
D1106_RS03815	COG4604	ABC transporter, ATP-binding protein
D1106_RS03820	COG1392	Phosphate transport regulator
D1106_RS03825	COG0306	phosphate transporter
D1106_RS03830	COG4991	sh3 domain protein
D1106_RS03840	COG3945	hemerythrin HHE cation binding domain
D1106_RS03845	COG0343	queuine tRNA-ribosyltransferase activity
D1106_RS03855	COG1278	Cold shock
D1106_RS03860	COG0288	reversible hydration of carbon dioxide
D1106_RS03865	COG0028	Belongs to the TPP enzyme family
D1106_RS03870	COG0440	acetolactate synthase activity
D1106_RS03875	COG0312	modulator of DNA gyrase
D1106_RS03880	COG3028	Belongs to the UPF0307 family
D1106_RS03885	COG3094	Invasion gene expression up-regulator, SirB
D1106_RS03895	COG1811	Na channel or pump
D1106_RS03900	COG3787	Belongs to the UPF0306 family
D1106_RS03905	COG0023	Translation Initiation Factor
D1106_RS03910	COG0284	orotidine-5'-phosphate decarboxylase activity
D1106_RS03915	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
D1106_RS03920	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
D1106_RS03925	COG0776	regulation of translation
D1106_RS03930	COG0539	negative regulation of cytoplasmic translation
D1106_RS03940	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D1106_RS03950	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D1106_RS03960	COG1785	Belongs to the alkaline phosphatase family
D1106_RS03965	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
D1106_RS03975	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
D1106_RS03975	COG3264	Mechanosensitive ion channel
D1106_RS03980	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
D1106_RS03980	COG3264	Mechanosensitive ion channel
D1106_RS03985	COG0318	PFAM AMP-dependent synthetase and ligase
D1106_RS03990	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
D1106_RS03995	COG0596	Alpha beta hydrolase
D1106_RS04005	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D1106_RS04025	COG1380	Effector of murein hydrolase LrgA
D1106_RS04030	COG1346	cytolysis
D1106_RS04035	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
D1106_RS04045	COG3036	rescue of stalled ribosome
D1106_RS04050	COG2226	methyltransferase
D1106_RS04070	COG0658	competence protein
D1106_RS04070	COG2333	competence protein COMEC
D1106_RS04075	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
D1106_RS04080	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D1106_RS04085	COG0737	Belongs to the 5'-nucleotidase family
D1106_RS04105	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D1106_RS04110	COG0508	dehydrogenase complex catalyzes the overall conversion of
D1106_RS04115	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
D1106_RS04125	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
D1106_RS04135	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
D1106_RS04140	COG1132	(ABC) transporter
D1106_RS04145	COG1346	cytolysis
D1106_RS04155	COG1199	ATP-dependent helicase activity
D1106_RS04165	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
D1106_RS04170	COG0629	single-stranded DNA binding
D1106_RS04205	COG0583	DNA-binding transcription factor activity
D1106_RS04210	COG2070	2-Nitropropane dioxygenase
D1106_RS04220	COG2315	Protein conserved in bacteria
D1106_RS04225	COG4172	Belongs to the ABC transporter superfamily
D1106_RS04230	COG4171	peptide transport system, permease
D1106_RS04235	COG4168	peptide transport system, permease
D1106_RS04240	COG4166	transmembrane transport
D1106_RS04245	COG3283	Transcriptional regulator of aromatic amino acids metabolism
D1106_RS04250	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
D1106_RS04260	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
D1106_RS04265	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
D1106_RS04285	COG1368	sulfuric ester hydrolase activity
D1106_RS04290	COG0633	Ferredoxin
D1106_RS04290	COG3217	Mosc domain protein beta barrel domain protein
D1106_RS04295	COG1722	exodeoxyribonuclease VII activity
D1106_RS04300	COG0142	geranyltranstransferase activity
D1106_RS04310	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
D1106_RS04315	COG1530	ribonuclease E activity
D1106_RS04320	COG1944	ATP diphosphatase activity
D1106_RS04325	COG2801	Transposase and inactivated derivatives
D1106_RS04340	COG0500	methyltransferase
D1106_RS04350	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
D1106_RS04370	COG2351	hydroxyisourate hydrolase activity
D1106_RS04380	COG0586	Pfam SNARE associated Golgi protein
D1106_RS04385	COG0187	DNA topoisomerase II activity
D1106_RS04390	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
D1106_RS04395	COG1349	DNA-binding transcription factor activity
D1106_RS04400	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
D1106_RS04405	COG2915	High frequency lysogenization protein hflD homolog
D1106_RS04410	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
D1106_RS04415	COG4988	ABC transporter
D1106_RS04420	COG2911	Protein conserved in bacteria
D1106_RS04425	COG0729	surface antigen
D1106_RS04430	COG2861	carbohydrate metabolic process
D1106_RS04435	COG4942	peptidase
D1106_RS04440	COG0588	phosphoglycerate mutase activity
D1106_RS04450	COG0572	uridine kinase
D1106_RS04455	COG0717	Belongs to the dCTP deaminase family
D1106_RS04460	COG1309	transcriptional regulator
D1106_RS04465	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D1106_RS04470	COG0842	Transport permease protein
D1106_RS04470	COG1129	ABC transporter
D1106_RS04475	COG0842	Transport permease protein
D1106_RS04485	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
D1106_RS04490	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
D1106_RS04495	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
D1106_RS04500	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
D1106_RS04500	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
D1106_RS04505	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D1106_RS04510	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
D1106_RS04515	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D1106_RS04520	COG4166	transmembrane transport
D1106_RS04530	COG0444	Belongs to the ABC transporter superfamily
D1106_RS04535	COG4608	Belongs to the ABC transporter superfamily
D1106_RS04545	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D1106_RS04555	COG0747	negative chemotaxis
D1106_RS04560	COG0814	amino acid
D1106_RS04565	COG1760	l-serine dehydratase
D1106_RS04570	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D1106_RS04570	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
D1106_RS04575	COG0135	phosphoribosylanthranilate isomerase activity
D1106_RS04575	COG0134	indole-3-glycerol-phosphate synthase activity
D1106_RS04580	COG3177	Filamentation induced by cAMP protein fic
D1106_RS04585	COG3098	single-species biofilm formation
D1106_RS04590	COG0564	pseudouridine synthase activity
D1106_RS04595	COG3140	Belongs to the UPF0181 family
D1106_RS04605	COG3025	triphosphatase activity
D1106_RS04610	COG3106	COG3106 Predicted ATPase
D1106_RS04615	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
D1106_RS04625	COG1473	amidohydrolase
D1106_RS04630	COG3069	C4-dicarboxylate transmembrane transporter activity
D1106_RS04635	COG3340	Belongs to the peptidase S51 family
D1106_RS04640	COG0495	leucyl-tRNA aminoacylation
D1106_RS04645	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
D1106_RS04650	COG1466	dna polymerase III delta subunit
D1106_RS04655	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
D1106_RS04660	COG0237	dephospho-CoA kinase activity
D1106_RS04670	COG1459	type II secretion system
D1106_RS04675	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D1106_RS04680	COG4969	Belongs to the N-Me-Phe pilin family
D1106_RS04685	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
D1106_RS04695	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
D1106_RS04700	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
D1106_RS04705	COG0730	response to heat
D1106_RS04710	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
D1106_RS04720	COG1024	Enoyl-CoA hydratase
D1106_RS04720	COG1250	3-hydroxyacyl-CoA dehydrogenase
D1106_RS04735	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
D1106_RS04745	COG0437	4 iron, 4 sulfur cluster binding
D1106_RS04750	COG2864	formate dehydrogenase
D1106_RS04755	COG3058	Necessary for formate dehydrogenase activity
D1106_RS04785	COG1560	Kdo2-lipid A biosynthetic process
D1106_RS04790	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D1106_RS04800	COG0302	gtp cyclohydrolase
D1106_RS04805	COG3642	lipopolysaccharide core region biosynthetic process
D1106_RS04815	COG0110	maltose O-acetyltransferase activity
D1106_RS04825	COG0583	DNA-binding transcription factor activity
D1106_RS04845	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D1106_RS04850	COG0215	cysteine-tRNA ligase activity
D1106_RS04855	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D1106_RS04860	COG0617	tRNA 3'-terminal CCA addition
D1106_RS04885	COG2975	iron-sulfur cluster assembly
D1106_RS04890	COG0633	Ferredoxin
D1106_RS04910	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
D1106_RS04920	COG0822	iron-sulfur transferase activity
D1106_RS04925	COG1104	cysteine desulfurase activity
D1106_RS04930	COG1959	2 iron, 2 sulfur cluster binding
D1106_RS04940	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D1106_RS04945	COG0784	Response regulator, receiver
D1106_RS04945	COG5002	protein histidine kinase activity
D1106_RS04945	COG2198	Histidine kinase
D1106_RS04950	COG0697	spore germination
D1106_RS04955	COG2840	Smr protein MutS2
D1106_RS04960	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
D1106_RS04965	COG2226	methyltransferase
D1106_RS04970	COG2830	Protein of unknown function (DUF452)
D1106_RS04975	COG0156	8-amino-7-oxononanoate synthase activity
D1106_RS04980	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D1106_RS04990	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D1106_RS04995	COG2027	D-alanyl-D-alanine carboxypeptidase
D1106_RS05015	COG2801	Transposase and inactivated derivatives
D1106_RS05020	COG2856	Zn peptidase
D1106_RS05025	COG3620	sequence-specific DNA binding
D1106_RS05060	COG1444	tRNA N-acetyltransferase activity
D1106_RS05065	COG0138	bifunctional purine biosynthesis protein purh
D1106_RS05085	COG3210	domain, Protein
D1106_RS05095	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
D1106_RS05100	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D1106_RS05110	COG3078	GTPase activator activity
D1106_RS05120	COG0786	glutamate:sodium symporter activity
D1106_RS05125	COG3112	Uncharacterised protein family (UPF0231)
D1106_RS05135	COG2350	Protein conserved in bacteria
D1106_RS05140	COG1607	acyl-coa hydrolase
D1106_RS05155	COG3092	negative regulation of chromosome organization
D1106_RS05160	COG0037	tRNA processing
D1106_RS05165	COG2056	Na+-H+ antiporter family
D1106_RS05170	COG0708	Exodeoxyribonuclease III
D1106_RS05175	COG0583	DNA-binding transcription factor activity
D1106_RS05195	COG0254	rRNA binding
D1106_RS05210	COG0753	catalase activity
D1106_RS05215	COG2963	transposase activity
D1106_RS05225	COG1408	metallophosphoesterase
D1106_RS05230	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D1106_RS05235	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D1106_RS05240	COG1085	galactose-1-phosphate uridylyltransferase
D1106_RS05245	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
D1106_RS05250	COG2017	converts alpha-aldose to the beta-anomer
D1106_RS05285	COG0489	protein tyrosine kinase activity
D1106_RS05295	COG2095	MarC family integral membrane protein
D1106_RS05300	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D1106_RS05310	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
D1106_RS05315	COG2354	Protein conserved in bacteria
D1106_RS05320	COG3071	HemY protein
D1106_RS05325	COG2959	enzyme of heme biosynthesis
D1106_RS05335	COG0181	hydroxymethylbilane synthase activity
D1106_RS05340	COG1454	alcohol dehydrogenase
D1106_RS05340	COG1012	belongs to the aldehyde dehydrogenase family
D1106_RS05355	COG0813	purine-nucleoside phosphorylase activity
D1106_RS05360	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
D1106_RS05365	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D1106_RS05370	COG2364	Membrane
D1106_RS05375	COG0800	Aldolase
D1106_RS05380	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D1106_RS05385	COG1904	glucuronate isomerase
D1106_RS05395	COG2186	Transcriptional regulator
D1106_RS05405	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D1106_RS05405	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D1106_RS05410	COG1216	Glycosyl transferase, family 2
D1106_RS05415	COG1216	Glycosyl transferase, family 2
D1106_RS05425	COG3306	glycosyltransferase involved in LPS biosynthesis
D1106_RS05435	COG5039	Polysaccharide pyruvyl transferase
D1106_RS05440	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D1106_RS05445	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D1106_RS05450	COG1605	Chorismate mutase
D1106_RS05450	COG0077	Prephenate dehydratase
D1106_RS05455	COG0339	signal peptide processing
D1106_RS05460	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D1106_RS05465	COG1882	Formate acetyltransferase
D1106_RS05470	COG2116	formate transmembrane transporter activity
D1106_RS05475	COG1238	metal cluster binding
D1106_RS05480	COG0501	Belongs to the peptidase M48B family
D1106_RS05485	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D1106_RS05490	COG2431	L-lysine efflux transmembrane transporter activity
D1106_RS05495	COG1169	isochorismate synthase
D1106_RS05500	COG0436	Aminotransferase
D1106_RS05505	COG2962	Rard protein
D1106_RS05510	COG2962	Rard protein
D1106_RS05515	COG1280	lysine exporter protein (LysE YggA)
D1106_RS05520	COG1629	transport
D1106_RS05520	COG4771	TonB-dependent receptor
D1106_RS05525	COG0748	coenzyme F420 binding
D1106_RS05535	COG3088	subunit of a heme lyase
D1106_RS05535	COG4235	cytochrome complex assembly
D1106_RS05540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D1106_RS05545	COG1138	Cytochrome C-type biogenesis protein
D1106_RS05550	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D1106_RS05550	COG0475	glutathione-regulated potassium exporter activity
D1106_RS05560	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D1106_RS05570	COG3111	PFAM Bacterial OB fold (BOF) protein
D1106_RS05585	COG0745	RESPONSE REGULATOR receiver
D1106_RS05590	COG0642	Histidine kinase
D1106_RS05595	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
D1106_RS05600	COG1862	Preprotein translocase
D1106_RS05605	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D1106_RS05610	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D1106_RS05615	COG1528	Iron-storage protein
D1106_RS05620	COG1528	Iron-storage protein
D1106_RS05625	COG2252	PERMEase
D1106_RS05630	COG0424	maF-like protein
D1106_RS05640	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D1106_RS05640	COG0301	tRNA thio-modification
D1106_RS05645	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
D1106_RS05650	COG0330	HflC and HflK could
D1106_RS05655	COG0330	HflC and HflK could
D1106_RS05660	COG3118	belongs to the thioredoxin family
D1106_RS05680	COG0531	amino acid
D1106_RS05700	COG3047	cAMP biosynthetic process
D1106_RS05705	COG0542	response to heat
D1106_RS05710	COG0798	PFAM Bile acid sodium symporter
D1106_RS05715	COG1393	Belongs to the ArsC family
D1106_RS05725	COG1027	Aspartate ammonia-lyase
D1106_RS05735	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
D1106_RS05740	COG3583	domain protein
D1106_RS05740	COG3525	Glycosyl hydrolase, family 20, catalytic domain
D1106_RS05740	COG3064	Membrane
D1106_RS05750	COG0720	synthase
D1106_RS05755	COG0602	queuosine metabolic process
D1106_RS05770	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
D1106_RS05780	COG0795	lipopolysaccharide-transporting ATPase activity
D1106_RS05785	COG0795	lipopolysaccharide-transporting ATPase activity
D1106_RS05795	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
D1106_RS05815	COG0861	Integral membrane protein TerC family
D1106_RS05820	COG1472	Belongs to the glycosyl hydrolase 3 family
D1106_RS05825	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D1106_RS05830	COG0148	phosphopyruvate hydratase activity
D1106_RS05835	COG1051	belongs to the nudix hydrolase family
D1106_RS05840	COG4316	Uncharacterized protein conserved in bacteria (DUF2251)
D1106_RS05850	COG1965	Belongs to the frataxin family
D1106_RS05860	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
D1106_RS05865	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D1106_RS05870	COG0564	pseudouridine synthase activity
D1106_RS05880	COG0205	6-phosphofructokinase activity
D1106_RS05885	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D1106_RS05890	COG1525	nuclease
D1106_RS05895	COG1115	amino acid carrier protein
D1106_RS05900	COG0628	permease
D1106_RS05910	COG0826	peptidase U32
D1106_RS05915	COG3307	-O-antigen
D1106_RS05920	COG1519	Transferase
D1106_RS05925	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
D1106_RS05930	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
D1106_RS05935	COG0802	atpase or kinase
D1106_RS05940	COG0860	N-Acetylmuramoyl-L-alanine amidase
D1106_RS05940	COG1388	LysM domain
D1106_RS05945	COG0166	Belongs to the GPI family
D1106_RS05950	COG2960	long-chain fatty acid transporting porin activity
D1106_RS05975	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
D1106_RS05985	COG0551	DNA topoisomerase type I activity
D1106_RS05995	COG2137	regulation of response to DNA damage stimulus
D1106_RS06000	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
D1106_RS06005	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D1106_RS06015	COG1322	Protein conserved in bacteria
D1106_RS06020	COG0512	Glutamine amidotransferase of anthranilate synthase
D1106_RS06035	COG0494	nUDIX hydrolase
D1106_RS06050	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
D1106_RS06055	COG0612	Peptidase, M16
D1106_RS06060	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D1106_RS06070	COG0583	DNA-binding transcription factor activity
D1106_RS06075	COG3266	domain, Protein
D1106_RS06080	COG1187	pseudouridine synthase activity
D1106_RS06085	COG0009	L-threonylcarbamoyladenylate synthase
D1106_RS06095	COG2837	iron assimilation
D1106_RS06100	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D1106_RS06105	COG0512	Glutamine amidotransferase of anthranilate synthase
D1106_RS06115	COG2226	methyltransferase
D1106_RS06120	COG2268	Band 7 protein
D1106_RS06125	COG2841	Protein conserved in bacteria
D1106_RS06130	COG0359	binds to the 23S rRNA
D1106_RS06140	COG2965	DNA replication, synthesis of RNA primer
D1106_RS06155	COG3201	nicotinamide mononucleotide transporter
D1106_RS06160	COG2976	Protein conserved in bacteria
D1106_RS06170	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
D1106_RS06175	COG1426	Protein conserved in bacteria
D1106_RS06180	COG0659	secondary active sulfate transmembrane transporter activity
D1106_RS06190	COG0673	inositol 2-dehydrogenase activity
D1106_RS06195	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D1106_RS06195	COG0475	glutathione-regulated potassium exporter activity
D1106_RS06225	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D1106_RS06245	COG1764	response to oxidative stress
D1106_RS06250	COG1902	pentaerythritol trinitrate reductase activity
D1106_RS06260	COG2910	NAD(P)H-binding
D1106_RS06285	COG2207	Transcriptional regulator
D1106_RS06295	COG1902	pentaerythritol trinitrate reductase activity
D1106_RS06300	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
D1106_RS06305	COG2084	Dehydrogenase
D1106_RS06310	COG0778	Nitroreductase
D1106_RS06315	COG2095	MarC family integral membrane protein
D1106_RS06330	COG0625	glutathione transferase activity
D1106_RS06345	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
D1106_RS06350	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D1106_RS06365	COG1275	C4-dicarboxylate transporter malic acid transport protein
D1106_RS06370	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D1106_RS06380	COG1132	(ABC) transporter
D1106_RS06385	COG1854	S-ribosylhomocysteine lyase activity
D1106_RS06390	COG3008	intermembrane lipid transfer
D1106_RS06395	COG0735	belongs to the Fur family
D1106_RS06400	COG0716	FMN binding
D1106_RS06410	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D1106_RS06415	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D1106_RS06420	COG2252	PERMEase
D1106_RS06425	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
D1106_RS06430	COG2081	HI0933 family
D1106_RS06435	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
D1106_RS06445	COG0560	Phosphoserine phosphatase
D1106_RS06450	COG1666	GTP binding
D1106_RS06460	COG0058	SHG alpha-glucan phosphorylase activity
D1106_RS06465	COG2909	trisaccharide binding
D1106_RS06475	COG4580	involved in the transport of maltose and maltodextrins
D1106_RS06480	COG3842	ATPase activity
D1106_RS06495	COG3833	ABC-type maltose transport systems, permease component
D1106_RS06500	COG1640	4-alpha-glucanotransferase
D1106_RS06505	COG1966	Carbon starvation protein
D1106_RS06510	COG0084	hydrolase, TatD family'
D1106_RS06515	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D1106_RS06525	COG0778	Nitroreductase
D1106_RS06540	COG4172	Belongs to the ABC transporter superfamily
D1106_RS06545	COG0191	fructose-bisphosphate aldolase activity
D1106_RS06550	COG0126	phosphoglycerate kinase activity
D1106_RS06555	COG0471	metal ion transport
D1106_RS06560	COG0471	metal ion transport
D1106_RS06565	COG0471	metal ion transport
D1106_RS06570	COG0187	DNA topoisomerase II activity
D1106_RS06575	COG5002	protein histidine kinase activity
D1106_RS06605	COG0789	Transcriptional regulator
D1106_RS06615	COG2217	Heavy metal translocating P-type atpase
D1106_RS06625	COG0300	oxidoreductase activity
D1106_RS06630	COG0778	Nitroreductase
D1106_RS06635	COG0616	signal peptide processing
D1106_RS06640	COG3719	Belongs to the RNase T2 family
D1106_RS06650	COG1252	NADH dehydrogenase
D1106_RS06655	COG2183	response to ionizing radiation
D1106_RS06660	COG3063	Type IV pilus biogenesis stability protein PilW
D1106_RS06700	COG2161	toxin-antitoxin pair type II binding
D1106_RS06705	COG4115	mRNA cleavage
D1106_RS06710	COG2835	tetraacyldisaccharide 4'-kinase activity
D1106_RS06715	COG1663	tetraacyldisaccharide 4'-kinase activity
D1106_RS06720	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
D1106_RS06730	COG2166	iron-sulfur cluster assembly
D1106_RS06750	COG0488	(ABC) transporter
D1106_RS06755	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D1106_RS06770	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
D1106_RS06775	COG5007	Belongs to the BolA IbaG family
D1106_RS06785	COG2854	intermembrane phospholipid transfer
D1106_RS06790	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D1106_RS06795	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
D1106_RS06800	COG1127	ABC transporter
D1106_RS06805	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D1106_RS06810	COG1090	epimerase
D1106_RS06830	COG0563	adenylate kinase activity
D1106_RS06840	COG2814	Major facilitator Superfamily
D1106_RS06870	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
D1106_RS06880	COG1794	racemase activity, acting on amino acids and derivatives
D1106_RS06885	COG2814	Major facilitator Superfamily
D1106_RS06890	COG0363	glucosamine-6-phosphate deaminase activity
D1106_RS06895	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
D1106_RS06900	COG1218	3'(2'),5'-bisphosphate nucleotidase
D1106_RS06905	COG0494	nUDIX hydrolase
D1106_RS06910	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
D1106_RS06915	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
D1106_RS06920	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D1106_RS06925	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
D1106_RS06930	COG0549	Belongs to the carbamate kinase family
D1106_RS06940	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
D1106_RS06945	COG1178	ABC-type Fe3 transport system permease component
D1106_RS06950	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D1106_RS06955	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D1106_RS06960	COG2190	(PTS) system
D1106_RS06970	COG0210	DNA helicase
D1106_RS06975	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
D1106_RS06980	COG0409	Hydrogenase expression formation protein
D1106_RS06985	COG0309	Hydrogenase expression formation protein (HypE)
D1106_RS06990	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
D1106_RS06995	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
D1106_RS07000	COG0437	4 iron, 4 sulfur cluster binding
D1106_RS07005	COG5557	Pfam Polysulphide reductase, NrfD
D1106_RS07010	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
D1106_RS07015	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
D1106_RS07020	COG1773	rubredoxin
D1106_RS07025	COG0298	carbon dioxide binding
D1106_RS07030	COG0375	protein maturation
D1106_RS07065	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
D1106_RS07070	COG0308	aminopeptidase N
D1106_RS07075	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
D1106_RS07080	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D1106_RS07085	COG0295	cytidine deaminase activity
D1106_RS07090	COG2177	Part of the ABC transporter FtsEX involved in
D1106_RS07095	COG2884	Cell division ATP-binding protein ftsE
D1106_RS07100	COG0552	protein localization to endoplasmic reticulum
D1106_RS07105	COG0742	ribosomal rna small subunit methyltransferase
D1106_RS07110	COG3099	Belongs to the UPF0263 family
D1106_RS07115	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D1106_RS07125	COG4160	amino acid transport
D1106_RS07130	COG4215	(ABC) transporter
D1106_RS07135	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D1106_RS07140	COG1126	abc transporter atp-binding protein
D1106_RS07145	COG1881	PFAM PEBP family protein
D1106_RS07155	COG3620	sequence-specific DNA binding
D1106_RS07165	COG4232	protein-disulfide reductase activity
D1106_RS07170	COG3101	peptidyl-lysine hydroxylation
D1106_RS07180	COG3107	peptidoglycan biosynthetic process
D1106_RS07185	COG0792	nuclease activity
D1106_RS07190	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
D1106_RS07225	COG1138	Cytochrome C-type biogenesis protein
D1106_RS07235	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D1106_RS07240	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D1106_RS07245	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D1106_RS07250	COG4133	protoheme IX ABC transporter activity
D1106_RS07255	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
D1106_RS07290	COG3630	sodium ion export across plasma membrane
D1106_RS07300	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
D1106_RS07305	COG2824	Alkylphosphonate utilization operon protein PhnA
D1106_RS07310	COG1858	cytochrome C peroxidase
D1106_RS07315	COG1872	DUF167
D1106_RS07320	COG0762	integral membrane protein
D1106_RS07325	COG3171	Protein conserved in bacteria
D1106_RS07330	COG0220	tRNA (guanine-N7-)-methyltransferase activity
D1106_RS07335	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D1106_RS07340	COG0416	fatty acid biosynthetic process
D1106_RS07345	COG0333	Belongs to the bacterial ribosomal protein bL32 family
D1106_RS07350	COG1399	metal-binding, possibly nucleic acid-binding protein
D1106_RS07355	COG4137	Cytochrome C assembly protein
D1106_RS07360	COG4536	flavin adenine dinucleotide binding
D1106_RS07365	COG0733	neurotransmitter:sodium symporter activity
D1106_RS07375	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D1106_RS07375	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D1106_RS07380	COG3715	PTS system
D1106_RS07385	COG3716	PTS system mannose fructose sorbose family IID component
D1106_RS07420	COG1840	ABC-type Fe3 transport system, periplasmic component
D1106_RS07435	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
D1106_RS07455	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
D1106_RS07460	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D1106_RS07465	COG0049	tRNA binding
D1106_RS07470	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
D1106_RS07475	COG0859	PFAM glycosyl transferase family 9
D1106_RS07480	COG0859	PFAM glycosyl transferase family 9
D1106_RS07490	COG3061	Opacity-associated protein A
D1106_RS07490	COG3266	domain, Protein
D1106_RS07495	COG1555	photosystem II stabilization
D1106_RS07520	COG0732	type I restriction modification DNA specificity domain
D1106_RS07525	COG4974	Belongs to the 'phage' integrase family
D1106_RS07535	COG2918	glutathione biosynthetic process
D1106_RS07535	COG1181	Belongs to the D-alanine--D-alanine ligase family
D1106_RS07545	COG0814	amino acid
D1106_RS07550	COG3691	Protein conserved in bacteria
D1106_RS07555	COG4989	oxidoreductase activity
D1106_RS07560	COG1022	Amp-dependent synthetase and ligase
D1106_RS07585	COG4211	Belongs to the binding-protein-dependent transport system permease family
D1106_RS07590	COG1129	ABC transporter
D1106_RS07595	COG1879	ABC-type sugar transport system periplasmic component
D1106_RS07600	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D1106_RS07600	COG2885	chlorophyll binding
D1106_RS07605	COG0277	FAD linked oxidase domain protein
D1106_RS07605	COG0247	lactate metabolic process
D1106_RS07610	COG2050	protein possibly involved in aromatic compounds catabolism
D1106_RS07620	COG3005	denitrification pathway
D1106_RS07625	COG3043	anaerobic respiration
D1106_RS07630	COG0348	domain, Protein
D1106_RS07635	COG0437	4 iron, 4 sulfur cluster binding
D1106_RS07640	COG0243	molybdopterin cofactor binding
D1106_RS07650	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D1106_RS07655	COG2249	NAD(P)H dehydrogenase (quinone) activity
D1106_RS07670	COG1530	ribonuclease E activity
D1106_RS07680	COG1755	Isoprenylcysteine carboxyl methyltransferase
D1106_RS07690	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
D1106_RS07700	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D1106_RS07705	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
D1106_RS07710	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D1106_RS07730	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
D1106_RS07740	COG1720	tRNA m6t6A37 methyltransferase activity
D1106_RS07750	COG4804	nuclease activity
D1106_RS07755	COG1575	Belongs to the MenA family. Type 1 subfamily
D1106_RS07760	COG0316	Belongs to the HesB IscA family
D1106_RS07765	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
D1106_RS07770	COG1088	dTDP-glucose 4,6-dehydratase activity
D1106_RS07795	COG1215	transferase activity, transferring glycosyl groups
D1106_RS07815	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
D1106_RS07820	COG0828	Belongs to the bacterial ribosomal protein bS21 family
D1106_RS07830	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D1106_RS07835	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
D1106_RS07845	COG0557	exoribonuclease II activity
D1106_RS07850	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D1106_RS07855	COG1309	transcriptional regulator
D1106_RS07860	COG0583	DNA-binding transcription factor activity
D1106_RS07865	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D1106_RS07865	COG0678	peroxiredoxin activity
D1106_RS07930	COG0825	malonyl-CoA metabolic process
D1106_RS07940	COG0204	Acyl-transferase
D1106_RS07945	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
D1106_RS07970	COG0783	Belongs to the Dps family
D1106_RS07985	COG1289	transmembrane transporter activity
D1106_RS07990	COG1803	Methylglyoxal synthase
D1106_RS07995	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
D1106_RS08005	COG0525	valine-tRNA ligase activity
D1106_RS08020	COG2153	protein acetylation
D1106_RS08025	COG2927	DNA polymerase III (CHI subunit)
D1106_RS08030	COG1652	LysM domain
D1106_RS08040	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D1106_RS08050	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
D1106_RS08055	COG1045	serine acetyltransferase
D1106_RS08060	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
D1106_RS08085	COG1072	(Pantothenic acid kinase))
D1106_RS08090	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D1106_RS08105	COG0521	Mo-molybdopterin cofactor biosynthetic process
D1106_RS08115	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
D1106_RS08125	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
D1106_RS08140	COG0625	glutathione transferase activity
D1106_RS08145	COG0019	diaminopimelate decarboxylase activity
D1106_RS08155	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
D1106_RS08160	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
D1106_RS08165	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D1106_RS08170	COG1053	succinate dehydrogenase
D1106_RS08175	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
D1106_RS08180	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
D1106_RS08185	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D1106_RS08190	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
D1106_RS08200	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
D1106_RS08240	COG4974	Belongs to the 'phage' integrase family
D1106_RS08300	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
D1106_RS08315	COG1151	hydroxylamine reductase activity
D1106_RS08320	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D1106_RS08325	COG2244	polysaccharide biosynthetic process
D1106_RS08330	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
D1106_RS08340	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
D1106_RS08345	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
D1106_RS08350	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
D1106_RS08370	COG0728	peptidoglycan biosynthetic process
D1106_RS08375	COG0268	Binds directly to 16S ribosomal RNA
D1106_RS08380	COG0569	domain protein
D1106_RS08385	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
D1106_RS08390	COG3276	selenocysteine insertion sequence binding
D1106_RS08395	COG1921	L-seryl-tRNASec selenium transferase activity
D1106_RS08405	COG0716	FMN binding
D1106_RS08430	COG1629	transport
D1106_RS08430	COG4771	TonB-dependent receptor
D1106_RS08490	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
D1106_RS08520	COG1119	ATPase activity
D1106_RS08535	COG1739	Uncharacterized protein family UPF0029
D1106_RS08540	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D1106_RS08545	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
D1106_RS08550	COG1970	mechanosensitive ion channel activity
D1106_RS08560	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
D1106_RS08565	COG0321	lipoyl(octanoyl) transferase activity
D1106_RS08570	COG2921	Belongs to the UPF0250 family
D1106_RS08575	COG1686	Belongs to the peptidase S11 family
D1106_RS08580	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D1106_RS08585	COG0772	Belongs to the SEDS family
D1106_RS08590	COG0768	penicillin binding
D1106_RS08595	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
D1106_RS08600	COG0799	negative regulation of ribosome biogenesis
D1106_RS08610	COG1126	abc transporter atp-binding protein
D1106_RS08615	COG0765	amino acid transport
D1106_RS08620	COG3681	Belongs to the UPF0597 family
D1106_RS08625	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
D1106_RS08635	COG3691	Protein conserved in bacteria
D1106_RS08685	COG0831	urea catabolic process
D1106_RS08695	COG1122	ATPase activity
D1106_RS08700	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
D1106_RS08705	COG0310	cobalt ion transport
D1106_RS08710	COG0310	cobalt ion transport
D1106_RS08715	COG5266	PFAM Nickel transport complex, NikM subunit, transmembrane
D1106_RS08720	COG0583	DNA-binding transcription factor activity
D1106_RS08730	COG0490	domain, Protein
D1106_RS08730	COG0471	metal ion transport
D1106_RS08735	COG3722	fumarate hydratase activity
D1106_RS08750	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D1106_RS08755	COG1349	DNA-binding transcription factor activity
D1106_RS08770	COG3914	O-linked N-acetylglucosamine transferase SPINDLY family
D1106_RS08775	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
D1106_RS08780	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D1106_RS08785	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D1106_RS08790	COG2900	Belongs to the SlyX family
D1106_RS08795	COG0545	Peptidyl-prolyl cis-trans isomerase
D1106_RS08800	COG2964	Protein conserved in bacteria
D1106_RS08805	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
D1106_RS08815	COG2168	tRNA wobble position uridine thiolation
D1106_RS08860	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
D1106_RS08890	COG0445	tRNA wobble uridine modification
D1106_RS08895	COG0561	phosphatase activity
D1106_RS08900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D1106_RS08905	COG3012	SEC-C Motif Domain Protein
D1106_RS08915	COG3716	PTS system mannose fructose sorbose family IID component
D1106_RS08920	COG3715	PTS system
D1106_RS08925	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D1106_RS08925	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
D1106_RS08930	COG2610	gluconate transmembrane transporter activity
D1106_RS08935	COG3265	gluconokinase activity
D1106_RS08940	COG1609	Transcriptional regulator
D1106_RS08945	COG1609	Transcriptional regulator
D1106_RS08960	COG1172	Belongs to the binding-protein-dependent transport system permease family
D1106_RS08965	COG1879	ABC-type sugar transport system periplasmic component
D1106_RS08970	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D1106_RS08975	COG0243	molybdopterin cofactor binding
D1106_RS08980	COG0437	4 iron, 4 sulfur cluster binding
D1106_RS08985	COG3302	dmso reductase anchor subunit
D1106_RS08990	COG3381	protein complex oligomerization
D1106_RS08995	COG2221	Nitrite and sulphite reductase 4Fe-4S
D1106_RS08995	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D1106_RS09030	COG0738	Major facilitator superfamily
D1106_RS09035	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D1106_RS09040	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
D1106_RS09045	COG1349	DNA-binding transcription factor activity
D1106_RS09050	COG1349	DNA-binding transcription factor activity
D1106_RS09055	COG2407	Converts the aldose L-fucose into the corresponding ketose L-fuculose
D1106_RS09060	COG1070	Carbohydrate kinase
D1106_RS09065	COG4154	Belongs to the RbsD FucU family
D1106_RS09070	COG0235	Class ii aldolase
D1106_RS09075	COG0738	Major facilitator superfamily
D1106_RS09080	COG1454	alcohol dehydrogenase
D1106_RS09090	COG0765	amino acid transport
D1106_RS09100	COG1126	abc transporter atp-binding protein
D1106_RS09105	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D1106_RS09125	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
D1106_RS09150	COG3623	hexulose-6-phosphate isomerase
D1106_RS09155	COG0235	Class ii aldolase
D1106_RS09160	COG0545	Peptidyl-prolyl cis-trans isomerase
D1106_RS09190	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D1106_RS09200	COG0758	DNA mediated transformation
D1106_RS09205	COG1297	OPT oligopeptide transporter protein
D1106_RS09220	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D1106_RS09230	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
D1106_RS09235	COG0081	regulation of translation
D1106_RS09240	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
D1106_RS09245	COG0222	ribosome binding
D1106_RS09310	COG1487	ribonuclease activity
D1106_RS09330	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
D1106_RS09335	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
D1106_RS09345	COG0346	lactoylglutathione lyase activity
D1106_RS09350	COG1194	a g-specific adenine glycosylase
D1106_RS09355	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
D1106_RS09360	COG0741	lytic transglycosylase activity
D1106_RS09390	COG0305	Participates in initiation and elongation during chromosome replication
D1106_RS09415	COG2801	Transposase and inactivated derivatives
D1106_RS09450	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
D1106_RS09470	COG2801	Transposase and inactivated derivatives
D1106_RS09475	COG0737	Belongs to the 5'-nucleotidase family
D1106_RS09480	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D1106_RS09485	COG0606	chelatase, subunit chli
D1106_RS09495	COG2267	carboxylic ester hydrolase activity
D1106_RS09500	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
D1106_RS09510	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
D1106_RS09520	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D1106_RS09525	COG0363	glucosamine-6-phosphate deaminase activity
D1106_RS09530	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D1106_RS09545	COG0051	transcription antitermination factor activity, RNA binding
D1106_RS09550	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
D1106_RS09555	COG0088	Forms part of the polypeptide exit tunnel
D1106_RS09560	COG0089	rRNA binding
D1106_RS09565	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
D1106_RS09570	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
D1106_RS09575	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
D1106_RS09580	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
D1106_RS09585	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
D1106_RS09590	COG0255	Belongs to the universal ribosomal protein uL29 family
D1106_RS09595	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
D1106_RS09605	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
D1106_RS09610	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
D1106_RS09615	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
D1106_RS09620	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
D1106_RS09625	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
D1106_RS09630	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
D1106_RS09635	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
D1106_RS09640	COG1841	ribosomal large subunit assembly
D1106_RS09645	COG0200	Binds to the 23S rRNA
D1106_RS09650	COG0201	protein transport
D1106_RS09660	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
D1106_RS09665	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
D1106_RS09670	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
D1106_RS09675	COG0202	RNA polymerase activity
D1106_RS09685	COG0228	four-way junction DNA binding
D1106_RS09690	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
D1106_RS09695	COG0336	Belongs to the RNA methyltransferase TrmD family
D1106_RS09700	COG0335	large ribosomal subunit rRNA binding
D1106_RS09705	COG2850	peptidyl-arginine hydroxylation
D1106_RS09710	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D1106_RS09715	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D1106_RS09755	COG0752	glycyl-tRNA synthetase alpha subunit
D1106_RS09760	COG2852	Protein conserved in bacteria
D1106_RS09785	COG2832	Protein of unknown function (DUF454)
D1106_RS09795	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
D1106_RS09805	COG0084	hydrolase, TatD family'
D1106_RS09820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D1106_RS09830	COG0470	DNA polymerase III
D1106_RS09835	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
D1106_RS09840	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D1106_RS09860	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
D1106_RS09865	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D1106_RS09870	COG0254	rRNA binding
D1106_RS09875	COG0257	Belongs to the bacterial ribosomal protein bL36 family
D1106_RS09880	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D1106_RS09885	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
D1106_RS09890	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D1106_RS09900	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
D1106_RS09915	COG0442	prolyl-tRNA aminoacylation
D1106_RS09925	COG1595	DNA-templated transcription, initiation
D1106_RS09930	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D1106_RS09940	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D1106_RS09965	COG2502	aspartate--ammonia ligase
D1106_RS09970	COG1522	sequence-specific DNA binding
D1106_RS09975	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
D1106_RS10045	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
D1106_RS10055	COG4208	sulfate ABC transporter
D1106_RS10060	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
D1106_RS10065	COG1304	FMN binding
D1106_RS10075	COG0812	UDP-N-acetylmuramate dehydrogenase activity
D1106_RS10090	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
D1106_RS10095	COG2995	paraquat-inducible protein a
D1106_RS10100	COG1305	Transglutaminase-like
D1106_RS10110	COG2608	mercury ion transmembrane transporter activity
D1106_RS10115	COG1979	alcohol dehydrogenase
D1106_RS10120	COG0583	DNA-binding transcription factor activity
D1106_RS10125	COG2171	N-acyltransferase activity
D1106_RS10130	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
D1106_RS10140	COG0511	ligase activity, forming carbon-carbon bonds
D1106_RS10145	COG0439	Biotin carboxylase
D1106_RS10155	COG3084	Protein conserved in bacteria
D1106_RS10160	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D1106_RS10170	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D1106_RS10170	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D1106_RS10175	COG0742	ribosomal rna small subunit methyltransferase
D1106_RS10180	COG1876	peptidase activity
D1106_RS10185	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D1106_RS10190	COG1393	Belongs to the ArsC family
D1106_RS10200	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
D1106_RS10205	COG0564	pseudouridine synthase activity
D1106_RS10215	COG0668	transmembrane transport
D1106_RS10220	COG0439	Biotin carboxylase
D1106_RS10230	COG1025	Belongs to the peptidase M16 family
D1106_RS10235	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
D1106_RS10260	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
D1106_RS10265	COG1067	ATP-dependent peptidase activity
D1106_RS10270	COG3120	sequence-specific DNA binding
D1106_RS10275	COG0180	Tryptophanyl-tRNA synthetase
D1106_RS10295	COG0730	response to heat
D1106_RS10310	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
D1106_RS10320	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
D1106_RS10325	COG2116	formate transmembrane transporter activity
D1106_RS10355	COG1070	Carbohydrate kinase
D1106_RS10360	COG2115	Belongs to the xylose isomerase family
D1106_RS10365	COG4213	ABC transporter substrate-binding protein
D1106_RS10370	COG1129	ABC transporter
D1106_RS10375	COG4214	carbohydrate transport
D1106_RS10380	COG1609	Transcriptional regulator
D1106_RS10380	COG2207	Transcriptional regulator
D1106_RS10385	COG3590	peptidase
D1106_RS10395	COG4145	pantothenate transmembrane transporter activity
D1106_RS10400	COG3924	membrane
D1106_RS10405	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
D1106_RS10410	COG2853	Lipoprotein
D1106_RS10415	COG0676	glucose-6-phosphate 1-epimerase activity
D1106_RS10430	COG0726	polysaccharide deacetylase
D1106_RS10430	COG1649	PFAM Uncharacterised BCR, COG1649
D1106_RS10435	COG1215	transferase activity, transferring glycosyl groups
D1106_RS10445	COG0149	triose-phosphate isomerase activity
D1106_RS10455	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
D1106_RS10460	COG1238	metal cluster binding
D1106_RS10475	COG1388	LysM domain
D1106_RS10475	COG4942	peptidase
D1106_RS10480	COG2818	Glycosylase
D1106_RS10490	COG0700	Nucleoside recognition
D1106_RS10495	COG3366	ferrous iron transmembrane transporter activity
D1106_RS10500	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
D1106_RS10505	COG0230	Belongs to the bacterial ribosomal protein bL34 family
D1106_RS10510	COG0594	ribonuclease P activity
D1106_RS10515	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D1106_RS10520	COG0174	glutamine synthetase
D1106_RS10525	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
D1106_RS10530	COG0494	nUDIX hydrolase
D1106_RS10560	COG1490	D-aminoacyl-tRNA deacylase activity
D1106_RS10565	COG1295	ribonuclease BN
D1106_RS10570	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
D1106_RS10605	COG1064	alcohol dehydrogenase
D1106_RS10615	COG1923	regulation of RNA biosynthetic process
D1106_RS10620	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
D1106_RS10630	COG1694	Mazg nucleotide pyrophosphohydrolase
D1106_RS10645	COG1309	transcriptional regulator
D1106_RS10655	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D1106_RS10660	COG2003	Belongs to the UPF0758 family
D1106_RS10665	COG0227	Belongs to the bacterial ribosomal protein bL28 family
D1106_RS10670	COG0267	Belongs to the bacterial ribosomal protein bL33 family
D1106_RS10680	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D1106_RS10685	COG0076	glutamate decarboxylase activity
D1106_RS10690	COG0425	Belongs to the sulfur carrier protein TusA family
D1106_RS10695	COG2391	methyltransferase activity
D1106_RS10700	COG3085	chromosome segregation
D1106_RS10715	COG0598	Magnesium transport protein CorA
D1106_RS10720	COG2226	methyltransferase
D1106_RS10735	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D1106_RS10740	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
D1106_RS10745	COG0805	protein transport
D1106_RS10765	COG1114	Component of the transport system for branched-chain amino acids
D1106_RS10770	COG1028	Short-chain dehydrogenase reductase Sdr
D1106_RS10775	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
D1106_RS10780	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
D1106_RS10785	COG0142	geranyltranstransferase activity
D1106_RS10795	COG0431	NADPH-dependent FMN reductase
D1106_RS10800	COG2259	Doxx family
D1106_RS10805	COG0261	This protein binds to 23S rRNA in the presence of protein L20
D1106_RS10810	COG0211	Belongs to the bacterial ribosomal protein bL27 family
D1106_RS10815	COG0697	spore germination
D1106_RS10820	COG4783	chaperone-mediated protein folding
D1106_RS10830	COG1040	competence protein
D1106_RS10835	COG2813	Specifically methylates the guanine in position
D1106_RS10845	COG0456	acetyltransferase
D1106_RS10850	COG0513	Belongs to the DEAD box helicase family
D1106_RS10860	COG0747	negative chemotaxis
D1106_RS10870	COG1584	GPR1 FUN34 yaaH family protein
D1106_RS10875	COG1120	ATPase activity
D1106_RS10880	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
D1106_RS10885	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D1106_RS10910	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
D1106_RS10915	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
D1106_RS10925	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D1106_RS10925	COG0131	Imidazoleglycerol-phosphate dehydratase
D1106_RS10935	COG4804	nuclease activity
D1106_RS10940	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
D1106_RS10955	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
D1106_RS10955	COG0140	phosphoribosyl-ATP diphosphatase activity
D1106_RS10960	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
D1106_RS10965	COG0024	Methionine aminopeptidase
D1106_RS10980	COG1621	beta-fructofuranosidase activity
D1106_RS10985	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D1106_RS10995	COG4591	ABC-type transport system involved in lipoprotein release permease component
D1106_RS11000	COG1136	(ABC) transporter
D1106_RS11005	COG4591	ABC-type transport system involved in lipoprotein release permease component
D1106_RS11010	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family