locus-tag class description D3U04_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix D3U04_RS00005 PF11638 DnaA N-terminal domain D3U04_RS00005 PF00308 Bacterial dnaA protein D3U04_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D3U04_RS00010 PF02767 DNA polymerase III beta subunit, central domain D3U04_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D3U04_RS00015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3U04_RS00015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D3U04_RS00020 PF02463 RecF/RecN/SMC N terminal domain D3U04_RS00025 PF05258 Dna[CI] antecedent, DciA D3U04_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus D3U04_RS00030 PF01751 Toprim domain D3U04_RS00030 PF00204 DNA gyrase B D3U04_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A D3U04_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller D3U04_RS00040 PF12089 Transmembrane domain of unknown function (DUF3566) D3U04_RS00205 PF05175 Methyltransferase small domain D3U04_RS00210 PF07786 Protein of unknown function (DUF1624) D3U04_RS00210 PF04235 Protein of unknown function (DUF418) D3U04_RS00235 PF07732 Multicopper oxidase D3U04_RS00235 PF07731 Multicopper oxidase D3U04_RS00240 PF01965 DJ-1/PfpI family D3U04_RS00240 PF12833 Helix-turn-helix domain D3U04_RS00245 PF01965 DJ-1/PfpI family D3U04_RS00250 PF00248 Aldo/keto reductase family D3U04_RS00290 PF14659 Phage integrase, N-terminal SAM-like domain D3U04_RS00290 PF00589 Phage integrase family D3U04_RS00305 PF01580 FtsK/SpoIIIE family D3U04_RS00305 PF09397 Ftsk gamma domain D3U04_RS00305 PF17854 FtsK alpha domain D3U04_RS00325 PF07702 UTRA domain D3U04_RS00325 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS00360 PF00459 Inositol monophosphatase family D3U04_RS00375 PF02698 DUF218 domain D3U04_RS00390 PF00067 Cytochrome P450 D3U04_RS00395 PF00884 Sulfatase D3U04_RS00400 PF01965 DJ-1/PfpI family D3U04_RS00400 PF12833 Helix-turn-helix domain D3U04_RS00410 PF00271 Helicase conserved C-terminal domain D3U04_RS00410 PF00270 DEAD/DEAH box helicase D3U04_RS00415 PF00132 Bacterial transferase hexapeptide (six repeats) D3U04_RS00425 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D3U04_RS00430 PF01694 Rhomboid family D3U04_RS00435 PF06781 Cell division protein CrgA D3U04_RS00440 PF04203 Sortase domain D3U04_RS00450 PF00117 Glutamine amidotransferase class-I D3U04_RS00455 PF00069 Protein kinase domain D3U04_RS00455 PF03793 PASTA domain D3U04_RS00460 PF00069 Protein kinase domain D3U04_RS00465 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS00470 PF01098 Cell cycle protein D3U04_RS00480 PF16697 Inner membrane component of T3SS, cytoplasmic domain D3U04_RS00505 PF00005 ABC transporter D3U04_RS00515 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS00520 PF04542 Sigma-70 region 2 D3U04_RS00520 PF08281 Sigma-70, region 4 D3U04_RS00525 PF00266 Aminotransferase class-V D3U04_RS00540 PF00999 Sodium/hydrogen exchanger family D3U04_RS00550 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS00555 PF03070 TENA/THI-4/PQQC family D3U04_RS00560 PF05368 NmrA-like family D3U04_RS00620 PF02678 Pirin D3U04_RS00620 PF05726 Pirin C-terminal cupin domain D3U04_RS00635 PF00484 Carbonic anhydrase D3U04_RS00670 PF01810 LysE type translocator D3U04_RS00675 PF00069 Protein kinase domain D3U04_RS00675 PF13191 AAA ATPase domain D3U04_RS00690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3U04_RS00695 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS00695 PF00107 Zinc-binding dehydrogenase D3U04_RS00700 PF07282 Putative transposase DNA-binding domain D3U04_RS00700 PF01385 Probable transposase D3U04_RS00700 PF12323 Helix-turn-helix domain D3U04_RS00705 PF10759 Protein of unknown function (DUF2587) D3U04_RS00715 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3U04_RS00715 PF02403 Seryl-tRNA synthetase N-terminal domain D3U04_RS00720 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS00735 PF00800 Prephenate dehydratase D3U04_RS00745 PF09594 Glycosyltransferase family 87 D3U04_RS00755 PF00535 Glycosyl transferase family 2 D3U04_RS00760 PF01740 STAS domain D3U04_RS00770 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS00770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS00775 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS00775 PF00072 Response regulator receiver domain D3U04_RS00795 PF13091 PLD-like domain D3U04_RS00795 PF13396 Phospholipase_D-nuclease N-terminal D3U04_RS00805 PF00501 AMP-binding enzyme D3U04_RS00805 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS00850 PF06441 Epoxide hydrolase N terminus D3U04_RS00855 PF10946 Protein of unknown function DUF2625 D3U04_RS00870 PF00009 Elongation factor Tu GTP binding domain D3U04_RS00870 PF03143 Elongation factor Tu C-terminal domain D3U04_RS00870 PF03144 Elongation factor Tu domain 2 D3U04_RS00880 PF00155 Aminotransferase class I and II D3U04_RS00880 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS00930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS00930 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS00945 PF00581 Rhodanese-like domain D3U04_RS00960 PF06827 Zinc finger found in FPG and IleRS D3U04_RS00960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D3U04_RS00970 PF00403 Heavy-metal-associated domain D3U04_RS00980 PF00403 Heavy-metal-associated domain D3U04_RS00990 PF02656 Domain of unknown function (DUF202) D3U04_RS01015 PF13460 NAD(P)H-binding D3U04_RS01035 PF03358 NADPH-dependent FMN reductase D3U04_RS01055 PF08281 Sigma-70, region 4 D3U04_RS01055 PF04542 Sigma-70 region 2 D3U04_RS01060 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS01060 PF00501 AMP-binding enzyme D3U04_RS01095 PF01965 DJ-1/PfpI family D3U04_RS01105 PF02163 Peptidase family M50 D3U04_RS01105 PF00571 CBS domain D3U04_RS01125 PF08281 Sigma-70, region 4 D3U04_RS01125 PF04542 Sigma-70 region 2 D3U04_RS01150 PF13411 MerR HTH family regulatory protein D3U04_RS01170 PF01323 DSBA-like thioredoxin domain D3U04_RS01180 PF00884 Sulfatase D3U04_RS01180 PF16385 Domain of unknown function D3U04_RS01190 PF08281 Sigma-70, region 4 D3U04_RS01190 PF04542 Sigma-70 region 2 D3U04_RS01200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3U04_RS01200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3U04_RS01205 PF09339 IclR helix-turn-helix domain D3U04_RS01205 PF01614 Bacterial transcriptional regulator D3U04_RS01210 PF00230 Major intrinsic protein D3U04_RS01215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3U04_RS01215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3U04_RS01220 PF01266 FAD dependent oxidoreductase D3U04_RS01220 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D3U04_RS01230 PF08281 Sigma-70, region 4 D3U04_RS01230 PF12680 SnoaL-like domain D3U04_RS01230 PF04542 Sigma-70 region 2 D3U04_RS01260 PF07739 TipAS antibiotic-recognition domain D3U04_RS01260 PF13411 MerR HTH family regulatory protein D3U04_RS01285 PF03009 Glycerophosphoryl diester phosphodiesterase family D3U04_RS01310 PF02673 Bacitracin resistance protein BacA D3U04_RS01335 PF16918 Protein kinase G tetratricopeptide repeat D3U04_RS01335 PF00069 Protein kinase domain D3U04_RS01335 PF16919 Protein kinase G rubredoxin domain D3U04_RS01360 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3U04_RS01365 PF01553 Acyltransferase D3U04_RS01365 PF00501 AMP-binding enzyme D3U04_RS01380 PF00155 Aminotransferase class I and II D3U04_RS01385 PF00892 EamA-like transporter family D3U04_RS01390 PF00561 alpha/beta hydrolase fold D3U04_RS01395 PF01243 Pyridoxamine 5'-phosphate oxidase D3U04_RS01400 PF13460 NAD(P)H-binding D3U04_RS01405 PF00069 Protein kinase domain D3U04_RS01405 PF14032 PknH-like extracellular domain D3U04_RS01415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3U04_RS01420 PF01259 SAICAR synthetase D3U04_RS01430 PF00206 Lyase D3U04_RS01430 PF10397 Adenylosuccinate lyase C-terminus D3U04_RS01445 PF03358 NADPH-dependent FMN reductase D3U04_RS01455 PF02843 Phosphoribosylglycinamide synthetase, C domain D3U04_RS01455 PF02844 Phosphoribosylglycinamide synthetase, N domain D3U04_RS01455 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D3U04_RS01470 PF00709 Adenylosuccinate synthetase D3U04_RS01485 PF01638 HxlR-like helix-turn-helix D3U04_RS01490 PF01116 Fructose-bisphosphate aldolase class-II D3U04_RS01495 PF09335 SNARE associated Golgi protein D3U04_RS01505 PF00156 Phosphoribosyl transferase domain D3U04_RS01520 PF01936 NYN domain D3U04_RS01540 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS01555 PF10431 C-terminal, D2-small domain, of ClpB protein D3U04_RS01555 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS01555 PF02861 Clp amino terminal domain, pathogenicity island component D3U04_RS01555 PF17871 AAA lid domain D3U04_RS01555 PF07724 AAA domain (Cdc48 subfamily) D3U04_RS01560 PF13411 MerR HTH family regulatory protein D3U04_RS01565 PF00226 DnaJ domain D3U04_RS01565 PF01556 DnaJ C terminal domain D3U04_RS01565 PF00684 DnaJ central domain D3U04_RS01570 PF01025 GrpE D3U04_RS01575 PF00012 Hsp70 protein D3U04_RS01580 PF08281 Sigma-70, region 4 D3U04_RS01580 PF04542 Sigma-70 region 2 D3U04_RS01600 PF05922 Peptidase inhibitor I9 D3U04_RS01600 PF00082 Subtilase family D3U04_RS01635 PF03848 Tellurite resistance protein TehB D3U04_RS01640 PF02754 Cysteine-rich domain D3U04_RS01640 PF13183 4Fe-4S dicluster domain D3U04_RS01640 PF02665 Nitrate reductase gamma subunit D3U04_RS01645 PF00583 Acetyltransferase (GNAT) family D3U04_RS01650 PF00202 Aminotransferase class-III D3U04_RS01655 PF06339 Ectoine synthase D3U04_RS01660 PF05721 Phytanoyl-CoA dioxygenase (PhyH) D3U04_RS01665 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) D3U04_RS01695 PF01638 HxlR-like helix-turn-helix D3U04_RS01715 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS01720 PF00881 Nitroreductase family D3U04_RS01725 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3U04_RS01740 PF00005 ABC transporter D3U04_RS01740 PF00664 ABC transporter transmembrane region D3U04_RS01760 PF00223 Photosystem I psaA/psaB protein D3U04_RS01760 PF00691 OmpA family D3U04_RS01770 PF00797 N-acetyltransferase D3U04_RS01790 PF02503 Polyphosphate kinase middle domain D3U04_RS01790 PF13090 Polyphosphate kinase C-terminal domain 2 D3U04_RS01790 PF13089 Polyphosphate kinase N-terminal domain D3U04_RS01790 PF17941 Polyphosphate kinase C-terminal domain 1 D3U04_RS01795 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS01795 PF00293 NUDIX domain D3U04_RS01800 PF05235 CHAD domain D3U04_RS01800 PF01928 CYTH domain D3U04_RS01805 PF12680 SnoaL-like domain D3U04_RS01805 PF08281 Sigma-70, region 4 D3U04_RS01805 PF04542 Sigma-70 region 2 D3U04_RS01860 PF01694 Rhomboid family D3U04_RS01865 PF00106 short chain dehydrogenase D3U04_RS01895 PF00741 Gas vesicle protein D3U04_RS01915 PF00741 Gas vesicle protein D3U04_RS01925 PF00741 Gas vesicle protein D3U04_RS01930 PF05121 Gas vesicle protein K D3U04_RS01930 PF00741 Gas vesicle protein D3U04_RS01935 PF12806 Acetyl-CoA dehydrogenase C-terminal like D3U04_RS01935 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS01935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS01935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS01965 PF03358 NADPH-dependent FMN reductase D3U04_RS01970 PF00296 Luciferase-like monooxygenase D3U04_RS01980 PF00067 Cytochrome P450 D3U04_RS02005 PF00892 EamA-like transporter family D3U04_RS02015 PF01180 Dihydroorotate dehydrogenase D3U04_RS02020 PF05175 Methyltransferase small domain D3U04_RS02020 PF17827 PrmC N-terminal domain D3U04_RS02025 PF01520 N-acetylmuramoyl-L-alanine amidase D3U04_RS02035 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS02040 PF17754 MftR C-terminal domain D3U04_RS02040 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS02055 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D3U04_RS02055 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D3U04_RS02065 PF02698 DUF218 domain D3U04_RS02070 PF02769 AIR synthase related protein, C-terminal domain D3U04_RS02070 PF00586 AIR synthase related protein, N-terminal domain D3U04_RS02075 PF00156 Phosphoribosyl transferase domain D3U04_RS02100 PF01638 HxlR-like helix-turn-helix D3U04_RS02105 PF07690 Major Facilitator Superfamily D3U04_RS02115 PF00586 AIR synthase related protein, N-terminal domain D3U04_RS02115 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D3U04_RS02115 PF02769 AIR synthase related protein, C-terminal domain D3U04_RS02125 PF13581 Histidine kinase-like ATPase domain D3U04_RS02130 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase D3U04_RS02170 PF04542 Sigma-70 region 2 D3U04_RS02170 PF12680 SnoaL-like domain D3U04_RS02170 PF08281 Sigma-70, region 4 D3U04_RS02190 PF00171 Aldehyde dehydrogenase family D3U04_RS02195 PF00676 Dehydrogenase E1 component D3U04_RS02200 PF02779 Transketolase, pyrimidine binding domain D3U04_RS02200 PF02780 Transketolase, C-terminal domain D3U04_RS02205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3U04_RS02205 PF00364 Biotin-requiring enzyme D3U04_RS02205 PF02817 e3 binding domain D3U04_RS02210 PF13722 5TM C-terminal transporter carbon starvation CstA D3U04_RS02210 PF02554 Carbon starvation protein CstA D3U04_RS02225 PF03033 Glycosyltransferase family 28 N-terminal domain D3U04_RS02250 PF00005 ABC transporter D3U04_RS02255 PF01032 FecCD transport family D3U04_RS02280 PF01032 FecCD transport family D3U04_RS02285 PF01032 FecCD transport family D3U04_RS02290 PF00005 ABC transporter D3U04_RS02295 PF00668 Condensation domain D3U04_RS02295 PF00550 Phosphopantetheine attachment site D3U04_RS02295 PF00501 AMP-binding enzyme D3U04_RS02295 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS02305 PF05977 Transmembrane secretion effector D3U04_RS02310 PF02261 Aspartate decarboxylase D3U04_RS02315 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS02315 PF00501 AMP-binding enzyme D3U04_RS02345 PF00425 chorismate binding enzyme D3U04_RS02350 PF00668 Condensation domain D3U04_RS02350 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS02350 PF00668 Condensation domain D3U04_RS02350 PF00550 Phosphopantetheine attachment site D3U04_RS02350 PF00550 Phosphopantetheine attachment site D3U04_RS02350 PF00501 AMP-binding enzyme D3U04_RS02350 PF00501 AMP-binding enzyme D3U04_RS02350 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS02375 PF00376 MerR family regulatory protein D3U04_RS02375 PF09278 MerR, DNA binding D3U04_RS02380 PF04072 Leucine carboxyl methyltransferase D3U04_RS02405 PF02668 Taurine catabolism dioxygenase TauD, TfdA family D3U04_RS02410 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS02415 PF00005 ABC transporter D3U04_RS02440 PF01497 Periplasmic binding protein D3U04_RS02445 PF03621 MbtH-like protein D3U04_RS02450 PF08021 Siderophore-interacting FAD-binding domain D3U04_RS02450 PF04954 Siderophore-interacting protein D3U04_RS02475 PF10503 Esterase PHB depolymerase D3U04_RS02490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3U04_RS02495 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS02505 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading D3U04_RS02515 PF07282 Putative transposase DNA-binding domain D3U04_RS02515 PF01385 Probable transposase D3U04_RS02515 PF12323 Helix-turn-helix domain D3U04_RS02525 PF10503 Esterase PHB depolymerase D3U04_RS02535 PF00005 ABC transporter D3U04_RS02535 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3U04_RS02540 PF00005 ABC transporter D3U04_RS02550 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS02575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D3U04_RS02575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D3U04_RS02580 PF03061 Thioesterase superfamily D3U04_RS02585 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS02585 PF00501 AMP-binding enzyme D3U04_RS02590 PF07690 Major Facilitator Superfamily D3U04_RS02630 PF00561 alpha/beta hydrolase fold D3U04_RS02635 PF08241 Methyltransferase domain D3U04_RS02655 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3U04_RS02655 PF00753 Metallo-beta-lactamase superfamily D3U04_RS02655 PF10996 Beta-Casp domain D3U04_RS02685 PF00293 NUDIX domain D3U04_RS02685 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS02710 PF17854 FtsK alpha domain D3U04_RS02710 PF01580 FtsK/SpoIIIE family D3U04_RS02710 PF09397 Ftsk gamma domain D3U04_RS02725 PF00589 Phage integrase family D3U04_RS02725 PF02899 Phage integrase, N-terminal SAM-like domain D3U04_RS02740 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS02740 PF03472 Autoinducer binding domain D3U04_RS02750 PF00471 Ribosomal protein L33 D3U04_RS02755 PF01197 Ribosomal protein L31 D3U04_RS02760 PF01783 Ribosomal L32p protein family D3U04_RS02785 PF07690 Major Facilitator Superfamily D3U04_RS02790 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D3U04_RS02790 PF01276 Orn/Lys/Arg decarboxylase, major domain D3U04_RS02810 PF03109 ABC1 family D3U04_RS02815 PF00348 Polyprenyl synthetase D3U04_RS02825 PF04542 Sigma-70 region 2 D3U04_RS02825 PF08281 Sigma-70, region 4 D3U04_RS02825 PF12680 SnoaL-like domain D3U04_RS02835 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS02850 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS02855 PF14602 Hexapeptide repeat of succinyl-transferase D3U04_RS02855 PF12464 Maltose acetyltransferase D3U04_RS02860 PF01061 ABC-2 type transporter D3U04_RS02865 PF00005 ABC transporter D3U04_RS02905 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS02905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS02915 PF03176 MMPL family D3U04_RS02920 PF07690 Major Facilitator Superfamily D3U04_RS02925 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS02935 PF01738 Dienelactone hydrolase family D3U04_RS02940 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS02945 PF00005 ABC transporter D3U04_RS02955 PF00296 Luciferase-like monooxygenase D3U04_RS02965 PF00962 Adenosine/AMP deaminase D3U04_RS02970 PF01613 Flavin reductase like domain D3U04_RS02975 PF03358 NADPH-dependent FMN reductase D3U04_RS02995 PF01547 Bacterial extracellular solute-binding protein D3U04_RS03000 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS03005 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS03010 PF17912 MalK OB fold domain D3U04_RS03010 PF00005 ABC transporter D3U04_RS03045 PF00005 ABC transporter D3U04_RS03045 PF00664 ABC transporter transmembrane region D3U04_RS03060 PF13545 Crp-like helix-turn-helix domain D3U04_RS03060 PF00027 Cyclic nucleotide-binding domain D3U04_RS03065 PF04343 Protein of unknown function, DUF488 D3U04_RS03080 PF12323 Helix-turn-helix domain D3U04_RS03080 PF01385 Probable transposase D3U04_RS03080 PF07282 Putative transposase DNA-binding domain D3U04_RS03090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS03090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS03090 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS03120 PF00149 Calcineurin-like phosphoesterase D3U04_RS03135 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain D3U04_RS03135 PF06974 Protein of unknown function (DUF1298) D3U04_RS03150 PF01810 LysE type translocator D3U04_RS03160 PF04542 Sigma-70 region 2 D3U04_RS03160 PF12680 SnoaL-like domain D3U04_RS03160 PF08281 Sigma-70, region 4 D3U04_RS03165 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS03185 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS03185 PF13977 BetI-type transcriptional repressor, C-terminal D3U04_RS03220 PF01385 Probable transposase D3U04_RS03220 PF12323 Helix-turn-helix domain D3U04_RS03220 PF07282 Putative transposase DNA-binding domain D3U04_RS03235 PF02405 Permease MlaE D3U04_RS03240 PF02405 Permease MlaE D3U04_RS03245 PF00313 'Cold-shock' DNA-binding domain D3U04_RS03250 PF03880 DbpA RNA binding domain D3U04_RS03250 PF00271 Helicase conserved C-terminal domain D3U04_RS03250 PF00270 DEAD/DEAH box helicase D3U04_RS03255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS03255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS03255 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS03300 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS03310 PF07690 Major Facilitator Superfamily D3U04_RS03315 PF01022 Bacterial regulatory protein, arsR family D3U04_RS03320 PF13411 MerR HTH family regulatory protein D3U04_RS03335 PF01494 FAD binding domain D3U04_RS03340 PF01047 MarR family D3U04_RS03355 PF00931 NB-ARC domain D3U04_RS03355 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS03355 PF03704 Bacterial transcriptional activator domain D3U04_RS03380 PF00067 Cytochrome P450 D3U04_RS03390 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS03390 PF00550 Phosphopantetheine attachment site D3U04_RS03390 PF08659 KR domain D3U04_RS03390 PF00698 Acyl transferase domain D3U04_RS03390 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS03390 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS03415 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS03415 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS03415 PF14765 Polyketide synthase dehydratase D3U04_RS03415 PF00550 Phosphopantetheine attachment site D3U04_RS03415 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS03415 PF00550 Phosphopantetheine attachment site D3U04_RS03415 PF14765 Polyketide synthase dehydratase D3U04_RS03415 PF08659 KR domain D3U04_RS03415 PF00698 Acyl transferase domain D3U04_RS03415 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS03415 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS03415 PF08659 KR domain D3U04_RS03415 PF00698 Acyl transferase domain D3U04_RS03415 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS03420 PF00698 Acyl transferase domain D3U04_RS03420 PF00550 Phosphopantetheine attachment site D3U04_RS03420 PF14765 Polyketide synthase dehydratase D3U04_RS03420 PF08659 KR domain D3U04_RS03420 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS03420 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS03420 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS03435 PF00931 NB-ARC domain D3U04_RS03435 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS03435 PF03704 Bacterial transcriptional activator domain D3U04_RS03450 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS03460 PF07690 Major Facilitator Superfamily D3U04_RS03465 PF00534 Glycosyl transferases group 1 D3U04_RS03465 PF13439 Glycosyltransferase Family 4 D3U04_RS03470 PF00072 Response regulator receiver domain D3U04_RS03470 PF04703 FaeA-like protein D3U04_RS03475 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D3U04_RS03475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS03475 PF00989 PAS fold D3U04_RS03475 PF17203 Single cache domain 3 D3U04_RS03480 PF00375 Sodium:dicarboxylate symporter family D3U04_RS03485 PF01427 D-ala-D-ala dipeptidase D3U04_RS03495 PF01638 HxlR-like helix-turn-helix D3U04_RS03510 PF01565 FAD binding domain D3U04_RS03510 PF08031 Berberine and berberine like D3U04_RS03515 PF00571 CBS domain D3U04_RS03515 PF01368 DHH family D3U04_RS03515 PF01743 Poly A polymerase head domain D3U04_RS03515 PF02272 DHHA1 domain D3U04_RS03515 PF12627 Probable RNA and SrmB- binding site of polymerase A D3U04_RS03520 PF00582 Universal stress protein family D3U04_RS03540 PF00135 Carboxylesterase family D3U04_RS03550 PF00553 Cellulose binding domain D3U04_RS03550 PF00331 Glycosyl hydrolase family 10 D3U04_RS03570 PF03741 Integral membrane protein TerC family D3U04_RS03580 PF00072 Response regulator receiver domain D3U04_RS03580 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS03585 PF07730 Histidine kinase D3U04_RS03650 PF01476 LysM domain D3U04_RS03650 PF00877 NlpC/P60 family D3U04_RS03700 PF00106 short chain dehydrogenase D3U04_RS03705 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS03710 PF00072 Response regulator receiver domain D3U04_RS03710 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS03715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS03715 PF00672 HAMP domain D3U04_RS03715 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS03720 PF13180 PDZ domain D3U04_RS03730 PF00472 RF-1 domain D3U04_RS03730 PF03462 PCRF domain D3U04_RS03735 PF01327 Polypeptide deformylase D3U04_RS03745 PF00132 Bacterial transferase hexapeptide (six repeats) D3U04_RS03750 PF17866 AAA lid domain D3U04_RS03750 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS03760 PF01865 Protein of unknown function DUF47 D3U04_RS03765 PF01384 Phosphate transporter family D3U04_RS03770 PF00005 ABC transporter D3U04_RS03775 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS03780 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS03785 PF12849 PBP superfamily domain D3U04_RS03790 PF00583 Acetyltransferase (GNAT) family D3U04_RS03795 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS03810 PF04545 Sigma-70, region 4 D3U04_RS03810 PF04542 Sigma-70 region 2 D3U04_RS03830 PF00581 Rhodanese-like domain D3U04_RS03835 PF07210 Protein of unknown function (DUF1416) D3U04_RS03840 PF00082 Subtilase family D3U04_RS03850 PF07690 Major Facilitator Superfamily D3U04_RS03855 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS03860 PF05721 Phytanoyl-CoA dioxygenase (PhyH) D3U04_RS03865 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS03865 PF00501 AMP-binding enzyme D3U04_RS03875 PF08659 KR domain D3U04_RS03875 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS03875 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS03875 PF08990 Erythronolide synthase docking D3U04_RS03875 PF14765 Polyketide synthase dehydratase D3U04_RS03875 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS03875 PF00698 Acyl transferase domain D3U04_RS03875 PF00550 Phosphopantetheine attachment site D3U04_RS03875 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS03895 PF18267 Rubredoxin NAD+ reductase C-terminal domain D3U04_RS03895 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS03895 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3U04_RS03895 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3U04_RS03895 PF04324 BFD-like [2Fe-2S] binding domain D3U04_RS03900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3U04_RS03900 PF00384 Molybdopterin oxidoreductase D3U04_RS03900 PF01568 Molydopterin dinucleotide binding domain D3U04_RS03905 PF07690 Major Facilitator Superfamily D3U04_RS03910 PF04551 GcpE protein D3U04_RS03915 PF02779 Transketolase, pyrimidine binding domain D3U04_RS03915 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D3U04_RS03915 PF02780 Transketolase, C-terminal domain D3U04_RS03920 PF00348 Polyprenyl synthetase D3U04_RS03925 PF02401 LytB protein D3U04_RS03935 PF01474 Class-II DAHP synthetase family D3U04_RS03940 PF00106 short chain dehydrogenase D3U04_RS03945 PF00857 Isochorismatase family D3U04_RS03950 PF00425 chorismate binding enzyme D3U04_RS03950 PF00117 Glutamine amidotransferase class-I D3U04_RS03985 PF01580 FtsK/SpoIIIE family D3U04_RS03995 PF05108 Type VII secretion system ESX-1, transport TM domain B D3U04_RS04000 PF06013 Proteins of 100 residues with WXG D3U04_RS04005 PF06013 Proteins of 100 residues with WXG D3U04_RS04020 PF00082 Subtilase family D3U04_RS04025 PF06013 Proteins of 100 residues with WXG D3U04_RS04030 PF06013 Proteins of 100 residues with WXG D3U04_RS04045 PF00082 Subtilase family D3U04_RS04050 PF00400 WD domain, G-beta repeat D3U04_RS04050 PF00069 Protein kinase domain D3U04_RS04065 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3U04_RS04075 PF03816 Cell envelope-related transcriptional attenuator domain D3U04_RS04080 PF00535 Glycosyl transferase family 2 D3U04_RS04085 PF00535 Glycosyl transferase family 2 D3U04_RS04095 PF03275 UDP-galactopyranose mutase D3U04_RS04100 PF17994 Galactofuranosyltransferase 2 N-terminal D3U04_RS04110 PF14524 Wzt C-terminal domain D3U04_RS04110 PF00005 ABC transporter D3U04_RS04115 PF01757 Acyltransferase family D3U04_RS04125 PF16347 Domain of unknown function (DUF4976) D3U04_RS04125 PF00884 Sulfatase D3U04_RS04155 PF13192 Thioredoxin domain D3U04_RS04155 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS04185 PF01225 Mur ligase family, catalytic domain D3U04_RS04185 PF02875 Mur ligase family, glutamate ligase domain D3U04_RS04185 PF08245 Mur ligase middle domain D3U04_RS04190 PF07685 CobB/CobQ-like glutamine amidotransferase domain D3U04_RS04205 PF03741 Integral membrane protein TerC family D3U04_RS04215 PF08768 Domain of unknown function (DUF1794) D3U04_RS04220 PF09335 SNARE associated Golgi protein D3U04_RS04225 PF01475 Ferric uptake regulator family D3U04_RS04230 PF01571 Aminomethyltransferase folate-binding domain D3U04_RS04240 PF02580 D-Tyr-tRNA(Tyr) deacylase D3U04_RS04245 PF05853 beta-keto acid cleavage enzyme D3U04_RS04265 PF04228 Putative neutral zinc metallopeptidase D3U04_RS04290 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS04295 PF03176 MMPL family D3U04_RS04315 PF04072 Leucine carboxyl methyltransferase D3U04_RS04325 PF01654 Cytochrome bd terminal oxidase subunit I D3U04_RS04330 PF03965 Penicillinase repressor D3U04_RS04345 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase D3U04_RS04350 PF16363 GDP-mannose 4,6 dehydratase D3U04_RS04355 PF01661 Macro domain D3U04_RS04360 PF00501 AMP-binding enzyme D3U04_RS04360 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS04370 PF00106 short chain dehydrogenase D3U04_RS04375 PF13439 Glycosyltransferase Family 4 D3U04_RS04375 PF00534 Glycosyl transferases group 1 D3U04_RS04380 PF10722 Putative bacterial sensory transduction regulator D3U04_RS04385 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS04390 PF01895 PhoU domain D3U04_RS04395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS04395 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS04400 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS04400 PF00072 Response regulator receiver domain D3U04_RS04415 PF02559 CarD-like/TRCF domain D3U04_RS04420 PF02542 YgbB family D3U04_RS04425 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3U04_RS04450 PF09190 DALR domain D3U04_RS04450 PF01406 tRNA synthetases class I (C) catalytic domain D3U04_RS04455 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3U04_RS04455 PF00588 SpoU rRNA Methylase family D3U04_RS04485 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS04485 PF07729 FCD domain D3U04_RS04490 PF13183 4Fe-4S dicluster domain D3U04_RS04490 PF01565 FAD binding domain D3U04_RS04490 PF02913 FAD linked oxidases, C-terminal domain D3U04_RS04495 PF00465 Iron-containing alcohol dehydrogenase D3U04_RS04500 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS04505 PF02525 Flavodoxin-like fold D3U04_RS04510 PF00893 Small Multidrug Resistance protein D3U04_RS04515 PF16124 RecQ zinc-binding D3U04_RS04515 PF00271 Helicase conserved C-terminal domain D3U04_RS04515 PF09382 RQC domain D3U04_RS04515 PF00270 DEAD/DEAH box helicase D3U04_RS04515 PF00570 HRDC domain D3U04_RS04525 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS04525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS04525 PF00672 HAMP domain D3U04_RS04530 PF00072 Response regulator receiver domain D3U04_RS04530 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS04540 PF00211 Adenylate and Guanylate cyclase catalytic domain D3U04_RS04540 PF13191 AAA ATPase domain D3U04_RS04545 PF01061 ABC-2 type transporter D3U04_RS04550 PF13732 Domain of unknown function (DUF4162) D3U04_RS04550 PF00005 ABC transporter D3U04_RS04560 PF10531 SLBB domain D3U04_RS04560 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D3U04_RS04560 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3U04_RS04570 PF13180 PDZ domain D3U04_RS04585 PF00012 Hsp70 protein D3U04_RS04595 PF00009 Elongation factor Tu GTP binding domain D3U04_RS04595 PF00679 Elongation factor G C-terminus D3U04_RS04595 PF03144 Elongation factor Tu domain 2 D3U04_RS04595 PF03764 Elongation factor G, domain IV D3U04_RS04595 PF14492 Elongation Factor G, domain II D3U04_RS04610 PF01872 RibD C-terminal domain D3U04_RS04620 PF07690 Major Facilitator Superfamily D3U04_RS04670 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase D3U04_RS04685 PF01325 Iron dependent repressor, N-terminal DNA binding domain D3U04_RS04685 PF00480 ROK family D3U04_RS04695 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS04700 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS04705 PF00232 Glycosyl hydrolase family 1 D3U04_RS04720 PF00933 Glycosyl hydrolase family 3 N terminal domain D3U04_RS04725 PF00652 Ricin-type beta-trefoil lectin domain D3U04_RS04730 PF14310 Fibronectin type III-like domain D3U04_RS04730 PF01915 Glycosyl hydrolase family 3 C-terminal domain D3U04_RS04730 PF00933 Glycosyl hydrolase family 3 N terminal domain D3U04_RS04735 PF00561 alpha/beta hydrolase fold D3U04_RS04750 PF03466 LysR substrate binding domain D3U04_RS04750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS04770 PF00106 short chain dehydrogenase D3U04_RS04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS04775 PF03466 LysR substrate binding domain D3U04_RS04820 PF00082 Subtilase family D3U04_RS04845 PF00069 Protein kinase domain D3U04_RS04845 PF00400 WD domain, G-beta repeat D3U04_RS04850 PF00069 Protein kinase domain D3U04_RS04855 PF04542 Sigma-70 region 2 D3U04_RS04855 PF08281 Sigma-70, region 4 D3U04_RS04860 PF13181 Tetratricopeptide repeat D3U04_RS04865 PF00982 Glycosyltransferase family 20 D3U04_RS04875 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS04880 PF02597 ThiS family D3U04_RS04915 PF00155 Aminotransferase class I and II D3U04_RS04915 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS04925 PF09397 Ftsk gamma domain D3U04_RS04925 PF17854 FtsK alpha domain D3U04_RS04925 PF01580 FtsK/SpoIIIE family D3U04_RS04945 PF00118 TCP-1/cpn60 chaperonin family D3U04_RS04975 PF04851 Type III restriction enzyme, res subunit D3U04_RS04975 PF00271 Helicase conserved C-terminal domain D3U04_RS04980 PF04075 F420H(2)-dependent quinone reductase D3U04_RS04995 PF00501 AMP-binding enzyme D3U04_RS04995 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS05010 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS05025 PF00313 'Cold-shock' DNA-binding domain D3U04_RS05030 PF07690 Major Facilitator Superfamily D3U04_RS05035 PF11228 Protein of unknown function (DUF3027) D3U04_RS05050 PF01047 MarR family D3U04_RS05055 PF05977 Transmembrane secretion effector D3U04_RS05060 PF02342 TerD domain D3U04_RS05065 PF02342 TerD domain D3U04_RS05105 PF00266 Aminotransferase class-V D3U04_RS05130 PF01243 Pyridoxamine 5'-phosphate oxidase D3U04_RS05130 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D3U04_RS05135 PF05977 Transmembrane secretion effector D3U04_RS05140 PF03167 Uracil DNA glycosylase superfamily D3U04_RS05145 PF18357 Diphteria toxin repressor SH3 domain D3U04_RS05145 PF02742 Iron dependent repressor, metal binding and dimerisation domain D3U04_RS05145 PF01325 Iron dependent repressor, N-terminal DNA binding domain D3U04_RS05150 PF13581 Histidine kinase-like ATPase domain D3U04_RS05150 PF13466 STAS domain D3U04_RS05150 PF07228 Stage II sporulation protein E (SpoIIE) D3U04_RS05150 PF08448 PAS fold D3U04_RS05155 PF08241 Methyltransferase domain D3U04_RS05170 PF07690 Major Facilitator Superfamily D3U04_RS05175 PF07690 Major Facilitator Superfamily D3U04_RS05180 PF02803 Thiolase, C-terminal domain D3U04_RS05180 PF00108 Thiolase, N-terminal domain D3U04_RS05185 PF00011 Hsp20/alpha crystallin family D3U04_RS05190 PF13411 MerR HTH family regulatory protein D3U04_RS05195 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS05195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS05195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS05205 PF08241 Methyltransferase domain D3U04_RS05210 PF13191 AAA ATPase domain D3U04_RS05210 PF00211 Adenylate and Guanylate cyclase catalytic domain D3U04_RS05225 PF01791 DeoC/LacD family aldolase D3U04_RS05230 PF00171 Aldehyde dehydrogenase family D3U04_RS05235 PF00171 Aldehyde dehydrogenase family D3U04_RS05245 PF10944 Protein of unknown function (DUF2630) D3U04_RS05250 PF02504 Fatty acid synthesis protein D3U04_RS05270 PF01161 Phosphatidylethanolamine-binding protein D3U04_RS05275 PF08239 Bacterial SH3 domain D3U04_RS05275 PF00005 ABC transporter D3U04_RS05295 PF00296 Luciferase-like monooxygenase D3U04_RS05305 PF03129 Anticodon binding domain D3U04_RS05305 PF09180 Prolyl-tRNA synthetase, C-terminal D3U04_RS05305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3U04_RS05310 PF00069 Protein kinase domain D3U04_RS05310 PF00400 WD domain, G-beta repeat D3U04_RS05325 PF00720 Subtilisin inhibitor-like D3U04_RS05330 PF08281 Sigma-70, region 4 D3U04_RS05330 PF04542 Sigma-70 region 2 D3U04_RS05340 PF03793 PASTA domain D3U04_RS05340 PF00069 Protein kinase domain D3U04_RS05345 PF00246 Zinc carboxypeptidase D3U04_RS05365 PF05193 Peptidase M16 inactive domain D3U04_RS05365 PF00675 Insulinase (Peptidase family M16) D3U04_RS05370 PF01740 STAS domain D3U04_RS05430 PF07690 Major Facilitator Superfamily D3U04_RS05450 PF01965 DJ-1/PfpI family D3U04_RS05465 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS05465 PF13185 GAF domain D3U04_RS05470 PF00501 AMP-binding enzyme D3U04_RS05470 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS05475 PF00501 AMP-binding enzyme D3U04_RS05475 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS05480 PF00860 Permease family D3U04_RS05545 PF01048 Phosphorylase superfamily D3U04_RS05555 PF03176 MMPL family D3U04_RS05565 PF03471 Transporter associated domain D3U04_RS05565 PF00999 Sodium/hydrogen exchanger family D3U04_RS05565 PF02080 TrkA-C domain D3U04_RS05570 PF01842 ACT domain D3U04_RS05570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3U04_RS05570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3U04_RS05575 PF01812 5-formyltetrahydrofolate cyclo-ligase family D3U04_RS05580 PF00483 Nucleotidyl transferase D3U04_RS05585 PF03453 MoeA N-terminal region (domain I and II) D3U04_RS05585 PF00994 Probable molybdopterin binding domain D3U04_RS05585 PF03454 MoeA C-terminal region (domain IV) D3U04_RS05590 PF01967 MoaC family D3U04_RS05595 PF00994 Probable molybdopterin binding domain D3U04_RS05600 PF13302 Acetyltransferase (GNAT) domain D3U04_RS05620 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS05620 PF00175 Oxidoreductase NAD-binding domain D3U04_RS05620 PF00970 Oxidoreductase FAD-binding domain D3U04_RS05625 PF00174 Oxidoreductase molybdopterin binding domain D3U04_RS05630 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS05635 PF04542 Sigma-70 region 2 D3U04_RS05635 PF08281 Sigma-70, region 4 D3U04_RS05635 PF12680 SnoaL-like domain D3U04_RS05640 PF00248 Aldo/keto reductase family D3U04_RS05655 PF00293 NUDIX domain D3U04_RS05655 PF03099 Biotin/lipoate A/B protein ligase family D3U04_RS05665 PF01047 MarR family D3U04_RS05675 PF03551 Transcriptional regulator PadR-like family D3U04_RS05675 PF13847 Methyltransferase domain D3U04_RS05685 PF05762 VWA domain containing CoxE-like protein D3U04_RS05695 PF07728 AAA domain (dynein-related subfamily) D3U04_RS05700 PF13569 Domain of unknown function (DUF4132) D3U04_RS05705 PF13569 Domain of unknown function (DUF4132) D3U04_RS05720 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS05730 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase D3U04_RS05730 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase D3U04_RS05735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3U04_RS05765 PF09334 tRNA synthetases class I (M) D3U04_RS05770 PF01026 TatD related DNase D3U04_RS05790 PF00398 Ribosomal RNA adenine dimethylase D3U04_RS05800 PF00288 GHMP kinases N terminal domain D3U04_RS05800 PF08544 GHMP kinases C terminal D3U04_RS05810 PF00005 ABC transporter D3U04_RS05810 PF16326 ABC transporter C-terminal domain D3U04_RS05810 PF12848 ABC transporter D3U04_RS05815 PF01047 MarR family D3U04_RS05825 PF13649 Methyltransferase domain D3U04_RS05850 PF00132 Bacterial transferase hexapeptide (six repeats) D3U04_RS05850 PF12804 MobA-like NTP transferase domain D3U04_RS05855 PF14572 Phosphoribosyl synthetase-associated domain D3U04_RS05855 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D3U04_RS05860 PF14693 Ribosomal protein TL5, C-terminal domain D3U04_RS05860 PF01386 Ribosomal L25p family D3U04_RS05865 PF01195 Peptidyl-tRNA hydrolase D3U04_RS05870 PF02397 Bacterial sugar transferase D3U04_RS05875 PF00459 Inositol monophosphatase family D3U04_RS05880 PF01507 Phosphoadenosine phosphosulfate reductase family D3U04_RS05885 PF00009 Elongation factor Tu GTP binding domain D3U04_RS05905 PF04101 Glycosyltransferase family 28 C-terminal domain D3U04_RS05905 PF03033 Glycosyltransferase family 28 N-terminal domain D3U04_RS05925 PF18496 Collagenase G catalytic helper subdomain D3U04_RS05925 PF08453 Peptidase family M9 N-terminal D3U04_RS05925 PF01752 Collagenase D3U04_RS05955 PF01925 Sulfite exporter TauE/SafE D3U04_RS05970 PF17757 UvrB interaction domain D3U04_RS05970 PF03461 TRCF domain D3U04_RS05970 PF00270 DEAD/DEAH box helicase D3U04_RS05970 PF02559 CarD-like/TRCF domain D3U04_RS05970 PF00271 Helicase conserved C-terminal domain D3U04_RS05985 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS05985 PF00912 Transglycosylase D3U04_RS05990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS05990 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS05995 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS05995 PF00085 Thioredoxin D3U04_RS06005 PF02310 B12 binding domain D3U04_RS06005 PF01642 Methylmalonyl-CoA mutase D3U04_RS06015 PF01497 Periplasmic binding protein D3U04_RS06020 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS06020 PF00107 Zinc-binding dehydrogenase D3U04_RS06025 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS06030 PF00005 ABC transporter D3U04_RS06040 PF00113 Enolase, C-terminal TIM barrel domain D3U04_RS06040 PF03952 Enolase, N-terminal domain D3U04_RS06055 PF02541 Ppx/GppA phosphatase family D3U04_RS06065 PF03167 Uracil DNA glycosylase superfamily D3U04_RS06070 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS06095 PF00108 Thiolase, N-terminal domain D3U04_RS06095 PF02803 Thiolase, C-terminal domain D3U04_RS06105 PF13472 GDSL-like Lipase/Acylhydrolase family D3U04_RS06110 PF00571 CBS domain D3U04_RS06110 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS06125 PF12823 Domain of unknown function (DUF3817) D3U04_RS06125 PF03176 MMPL family D3U04_RS06130 PF01053 Cys/Met metabolism PLP-dependent enzyme D3U04_RS06150 PF01078 Magnesium chelatase, subunit ChlI D3U04_RS06150 PF17863 AAA lid domain D3U04_RS06155 PF08495 FIST N domain D3U04_RS06155 PF10442 FIST C domain D3U04_RS06160 PF00480 ROK family D3U04_RS06165 PF13291 ACT domain D3U04_RS06165 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS06175 PF11838 ERAP1-like C-terminal domain D3U04_RS06175 PF01433 Peptidase family M1 domain D3U04_RS06180 PF01433 Peptidase family M1 domain D3U04_RS06180 PF11838 ERAP1-like C-terminal domain D3U04_RS06185 PF06271 RDD family D3U04_RS06190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3U04_RS06200 PF03449 Transcription elongation factor, N-terminal D3U04_RS06200 PF01272 Transcription elongation factor, GreA/GreB, C-term D3U04_RS06210 PF02585 GlcNAc-PI de-N-acetylase D3U04_RS06220 PF06772 Bacterial low temperature requirement A protein (LtrA) D3U04_RS06230 PF12706 Beta-lactamase superfamily domain D3U04_RS06230 PF00753 Metallo-beta-lactamase superfamily D3U04_RS06235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3U04_RS06235 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS06240 PF03190 Protein of unknown function, DUF255 D3U04_RS06245 PF00877 NlpC/P60 family D3U04_RS06255 PF01255 Putative undecaprenyl diphosphate synthase D3U04_RS06260 PF02562 PhoH-like protein D3U04_RS06260 PF13638 PIN domain D3U04_RS06275 PF10415 Fumarase C C-terminus D3U04_RS06275 PF00206 Lyase D3U04_RS06280 PF03793 PASTA domain D3U04_RS06280 PF00069 Protein kinase domain D3U04_RS06285 PF00400 WD domain, G-beta repeat D3U04_RS06285 PF00069 Protein kinase domain D3U04_RS06290 PF05683 Fumarase C-terminus D3U04_RS06290 PF05681 Fumarate hydratase (Fumerase) D3U04_RS06295 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS06295 PF00155 Aminotransferase class I and II D3U04_RS06315 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D3U04_RS06330 PF02609 Exonuclease VII small subunit D3U04_RS06335 PF13742 OB-fold nucleic acid binding domain D3U04_RS06335 PF02601 Exonuclease VII, large subunit D3U04_RS06345 PF02401 LytB protein D3U04_RS06355 PF02646 RmuC family D3U04_RS06360 PF07859 alpha/beta hydrolase fold D3U04_RS06365 PF01926 50S ribosome-binding GTPase D3U04_RS06365 PF06071 Protein of unknown function (DUF933) D3U04_RS06420 PF00293 NUDIX domain D3U04_RS06430 PF14492 Elongation Factor G, domain II D3U04_RS06430 PF00009 Elongation factor Tu GTP binding domain D3U04_RS06430 PF03144 Elongation factor Tu domain 2 D3U04_RS06430 PF00679 Elongation factor G C-terminus D3U04_RS06450 PF10431 C-terminal, D2-small domain, of ClpB protein D3U04_RS06450 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS06450 PF17871 AAA lid domain D3U04_RS06450 PF07724 AAA domain (Cdc48 subfamily) D3U04_RS06450 PF02861 Clp amino terminal domain, pathogenicity island component D3U04_RS06460 PF00069 Protein kinase domain D3U04_RS06480 PF13085 2Fe-2S iron-sulfur cluster binding domain D3U04_RS06480 PF13183 4Fe-4S dicluster domain D3U04_RS06485 PF13545 Crp-like helix-turn-helix domain D3U04_RS06485 PF00027 Cyclic nucleotide-binding domain D3U04_RS06490 PF03466 LysR substrate binding domain D3U04_RS06490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS06495 PF13085 2Fe-2S iron-sulfur cluster binding domain D3U04_RS06495 PF13183 4Fe-4S dicluster domain D3U04_RS06500 PF02910 Fumarate reductase flavoprotein C-term D3U04_RS06500 PF00890 FAD binding domain D3U04_RS06510 PF00072 Response regulator receiver domain D3U04_RS06515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS06515 PF01590 GAF domain D3U04_RS06515 PF00360 Phytochrome region D3U04_RS06515 PF08446 PAS fold D3U04_RS06515 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS06525 PF00664 ABC transporter transmembrane region D3U04_RS06525 PF00005 ABC transporter D3U04_RS06530 PF00664 ABC transporter transmembrane region D3U04_RS06530 PF00005 ABC transporter D3U04_RS06535 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region D3U04_RS06535 PF00326 Prolyl oligopeptidase family D3U04_RS06540 PF00069 Protein kinase domain D3U04_RS06540 PF00400 WD domain, G-beta repeat D3U04_RS06545 PF02585 GlcNAc-PI de-N-acetylase D3U04_RS06555 PF01613 Flavin reductase like domain D3U04_RS06560 PF00202 Aminotransferase class-III D3U04_RS06565 PF01037 Lrp/AsnC ligand binding domain D3U04_RS06570 PF13360 PQQ-like domain D3U04_RS06570 PF00069 Protein kinase domain D3U04_RS06575 PF03737 Aldolase/RraA D3U04_RS06580 PF01965 DJ-1/PfpI family D3U04_RS06600 PF01406 tRNA synthetases class I (C) catalytic domain D3U04_RS06600 PF09190 DALR domain D3U04_RS06615 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS06620 PF01522 Polysaccharide deacetylase D3U04_RS06620 PF11738 Protein of unknown function (DUF3298) D3U04_RS06620 PF13739 Deacetylase PdaC D3U04_RS06635 PF00037 4Fe-4S binding domain D3U04_RS06640 PF00155 Aminotransferase class I and II D3U04_RS06675 PF00376 MerR family regulatory protein D3U04_RS06675 PF09278 MerR, DNA binding D3U04_RS06680 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS06680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS06680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS06690 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D3U04_RS06690 PF14602 Hexapeptide repeat of succinyl-transferase D3U04_RS06690 PF00132 Bacterial transferase hexapeptide (six repeats) D3U04_RS06695 PF00128 Alpha amylase, catalytic domain D3U04_RS06695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3U04_RS06695 PF02806 Alpha amylase, C-terminal all-beta domain D3U04_RS06700 PF05175 Methyltransferase small domain D3U04_RS06700 PF17827 PrmC N-terminal domain D3U04_RS06705 PF07687 Peptidase dimerisation domain D3U04_RS06705 PF01546 Peptidase family M20/M25/M40 D3U04_RS06710 PF03641 Possible lysine decarboxylase D3U04_RS06715 PF03641 Possible lysine decarboxylase D3U04_RS06740 PF03352 Methyladenine glycosylase D3U04_RS06750 PF00883 Cytosol aminopeptidase family, catalytic domain D3U04_RS06750 PF02789 Cytosol aminopeptidase family, N-terminal domain D3U04_RS06755 PF01596 O-methyltransferase D3U04_RS06760 PF04542 Sigma-70 region 2 D3U04_RS06760 PF08281 Sigma-70, region 4 D3U04_RS06775 PF13180 PDZ domain D3U04_RS06780 PF02416 mttA/Hcf106 family D3U04_RS06785 PF10609 NUBPL iron-transfer P-loop NTPase D3U04_RS06785 PF01883 Iron-sulfur cluster assembly protein D3U04_RS06800 PF03448 MgtE intracellular N domain D3U04_RS06800 PF01769 Divalent cation transporter D3U04_RS06800 PF00571 CBS domain D3U04_RS06810 PF08281 Sigma-70, region 4 D3U04_RS06810 PF04542 Sigma-70 region 2 D3U04_RS06825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS06825 PF03466 LysR substrate binding domain D3U04_RS06835 PF03328 HpcH/HpaI aldolase/citrate lyase family D3U04_RS06840 PF02517 CPBP intramembrane metalloprotease D3U04_RS06855 PF00293 NUDIX domain D3U04_RS06880 PF00561 alpha/beta hydrolase fold D3U04_RS06890 PF00270 DEAD/DEAH box helicase D3U04_RS06890 PF00271 Helicase conserved C-terminal domain D3U04_RS06895 PF03793 PASTA domain D3U04_RS06895 PF00069 Protein kinase domain D3U04_RS06905 PF00069 Protein kinase domain D3U04_RS06930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3U04_RS06930 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS06935 PF01068 ATP dependent DNA ligase domain D3U04_RS06935 PF13298 DNA polymerase Ligase (LigD) D3U04_RS06935 PF04679 ATP dependent DNA ligase C terminal region D3U04_RS06940 PF04679 ATP dependent DNA ligase C terminal region D3U04_RS06940 PF01068 ATP dependent DNA ligase domain D3U04_RS06940 PF13298 DNA polymerase Ligase (LigD) D3U04_RS06945 PF02735 Ku70/Ku80 beta-barrel domain D3U04_RS06955 PF02515 CoA-transferase family III D3U04_RS06960 PF01039 Carboxyl transferase domain D3U04_RS06990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3U04_RS06990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3U04_RS06995 PF00230 Major intrinsic protein D3U04_RS07000 PF00756 Putative esterase D3U04_RS07000 PF01476 LysM domain D3U04_RS07020 PF02811 PHP domain D3U04_RS07025 PF13411 MerR HTH family regulatory protein D3U04_RS07025 PF07739 TipAS antibiotic-recognition domain D3U04_RS07030 PF00106 short chain dehydrogenase D3U04_RS07040 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS07040 PF00107 Zinc-binding dehydrogenase D3U04_RS07045 PF03631 Virulence factor BrkB D3U04_RS07060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS07060 PF12806 Acetyl-CoA dehydrogenase C-terminal like D3U04_RS07060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS07060 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS07065 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS07075 PF12697 Alpha/beta hydrolase family D3U04_RS07085 PF00216 Bacterial DNA-binding protein D3U04_RS07090 PF02627 Carboxymuconolactone decarboxylase family D3U04_RS07095 PF05726 Pirin C-terminal cupin domain D3U04_RS07095 PF02678 Pirin D3U04_RS07110 PF02872 5'-nucleotidase, C-terminal domain D3U04_RS07110 PF00149 Calcineurin-like phosphoesterase D3U04_RS07115 PF00082 Subtilase family D3U04_RS07120 PF12706 Beta-lactamase superfamily domain D3U04_RS07135 PF12323 Helix-turn-helix domain D3U04_RS07135 PF01385 Probable transposase D3U04_RS07135 PF07282 Putative transposase DNA-binding domain D3U04_RS07155 PF13458 Periplasmic binding protein D3U04_RS07160 PF11862 Domain of unknown function (DUF3382) D3U04_RS07160 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS07165 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS07170 PF00005 ABC transporter D3U04_RS07175 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3U04_RS07175 PF00005 ABC transporter D3U04_RS07185 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS07185 PF00501 AMP-binding enzyme D3U04_RS07205 PF04075 F420H(2)-dependent quinone reductase D3U04_RS07215 PF00580 UvrD/REP helicase N-terminal domain D3U04_RS07215 PF13361 UvrD-like helicase C-terminal domain D3U04_RS07220 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3U04_RS07220 PF14403 Circularly permuted ATP-grasp type 2 D3U04_RS07225 PF13537 Glutamine amidotransferase domain D3U04_RS07225 PF00733 Asparagine synthase D3U04_RS07240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS07240 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS07240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS07250 PF17938 Tetracyclin repressor-like, C-terminal domain D3U04_RS07250 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS07255 PF00108 Thiolase, N-terminal domain D3U04_RS07255 PF02803 Thiolase, C-terminal domain D3U04_RS07265 PF00171 Aldehyde dehydrogenase family D3U04_RS07270 PF00501 AMP-binding enzyme D3U04_RS07270 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS07280 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS07285 PF00720 Subtilisin inhibitor-like D3U04_RS07290 PF00135 Carboxylesterase family D3U04_RS07295 PF00005 ABC transporter D3U04_RS07295 PF02687 FtsX-like permease family D3U04_RS07295 PF12704 MacB-like periplasmic core domain D3U04_RS07300 PF00005 ABC transporter D3U04_RS07300 PF02687 FtsX-like permease family D3U04_RS07300 PF12704 MacB-like periplasmic core domain D3U04_RS07315 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS07315 PF00072 Response regulator receiver domain D3U04_RS07320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS07320 PF00672 HAMP domain D3U04_RS07320 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS07325 PF00398 Ribosomal RNA adenine dimethylase D3U04_RS07355 PF00929 Exonuclease D3U04_RS07370 PF00155 Aminotransferase class I and II D3U04_RS07370 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS07400 PF00588 SpoU rRNA Methylase family D3U04_RS07425 PF00912 Transglycosylase D3U04_RS07425 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS07435 PF05698 Bacterial trigger factor protein (TF) C-terminus D3U04_RS07435 PF05697 Bacterial trigger factor protein (TF) D3U04_RS07435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3U04_RS07450 PF09364 XFP N-terminal domain D3U04_RS07450 PF09363 XFP C-terminal domain D3U04_RS07450 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase D3U04_RS07455 PF00871 Acetokinase family D3U04_RS07460 PF00067 Cytochrome P450 D3U04_RS07465 PF17853 GGDEF-like domain D3U04_RS07465 PF13556 PucR C-terminal helix-turn-helix domain D3U04_RS07465 PF07905 Purine catabolism regulatory protein-like family D3U04_RS07475 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS07480 PF03176 MMPL family D3U04_RS07505 PF00171 Aldehyde dehydrogenase family D3U04_RS07515 PF05121 Gas vesicle protein K D3U04_RS07515 PF00741 Gas vesicle protein D3U04_RS07520 PF00741 Gas vesicle protein D3U04_RS07530 PF00741 Gas vesicle protein D3U04_RS07550 PF00741 Gas vesicle protein D3U04_RS07575 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS07575 PF13823 Alcohol dehydrogenase GroES-associated D3U04_RS07575 PF00107 Zinc-binding dehydrogenase D3U04_RS07580 PF13631 Cytochrome b(N-terminal)/b6/petB D3U04_RS07585 PF00106 short chain dehydrogenase D3U04_RS07615 PF00135 Carboxylesterase family D3U04_RS07625 PF03186 CobD/Cbib protein D3U04_RS07630 PF07685 CobB/CobQ-like glutamine amidotransferase domain D3U04_RS07630 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3U04_RS07650 PF08241 Methyltransferase domain D3U04_RS07665 PF00400 WD domain, G-beta repeat D3U04_RS07665 PF00069 Protein kinase domain D3U04_RS07680 PF07690 Major Facilitator Superfamily D3U04_RS07715 PF00296 Luciferase-like monooxygenase D3U04_RS07740 PF13519 von Willebrand factor type A domain D3U04_RS07740 PF17863 AAA lid domain D3U04_RS07740 PF07728 AAA domain (dynein-related subfamily) D3U04_RS07745 PF12557 Cob(I)alamin adenosyltransferase N terminal D3U04_RS07745 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP D3U04_RS07750 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D3U04_RS07750 PF07685 CobB/CobQ-like glutamine amidotransferase domain D3U04_RS07755 PF13302 Acetyltransferase (GNAT) domain D3U04_RS07760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3U04_RS07765 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3U04_RS07770 PF01888 CbiD D3U04_RS07775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3U04_RS07780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3U04_RS07790 PF02570 Precorrin-8X methylmutase D3U04_RS07795 PF01903 CbiX D3U04_RS07800 PF00155 Aminotransferase class I and II D3U04_RS07805 PF02277 Phosphoribosyltransferase D3U04_RS07810 PF10414 Sirohaem synthase dimerisation region D3U04_RS07810 PF14824 Sirohaem biosynthesis protein central D3U04_RS07810 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3U04_RS07815 PF03193 RsgA GTPase D3U04_RS07825 PF00436 Single-strand binding protein family D3U04_RS07830 PF00990 Diguanylate cyclase, GGDEF domain D3U04_RS07845 PF00005 ABC transporter D3U04_RS07845 PF12848 ABC transporter D3U04_RS07860 PF07690 Major Facilitator Superfamily D3U04_RS07870 PF01152 Bacterial-like globin D3U04_RS07875 PF00924 Mechanosensitive ion channel D3U04_RS07895 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS07900 PF00326 Prolyl oligopeptidase family D3U04_RS07900 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain D3U04_RS07920 PF07883 Cupin domain D3U04_RS07920 PF02130 Uncharacterized protein family UPF0054 D3U04_RS07930 PF00920 Dehydratase family D3U04_RS07940 PF01425 Amidase D3U04_RS07945 PF02446 4-alpha-glucanotransferase D3U04_RS07950 PF01433 Peptidase family M1 domain D3U04_RS07950 PF11838 ERAP1-like C-terminal domain D3U04_RS07955 PF01323 DSBA-like thioredoxin domain D3U04_RS07970 PF00005 ABC transporter D3U04_RS07985 PF02502 Ribose/Galactose Isomerase D3U04_RS07990 PF13466 STAS domain D3U04_RS07990 PF08448 PAS fold D3U04_RS07990 PF07228 Stage II sporulation protein E (SpoIIE) D3U04_RS07990 PF13581 Histidine kinase-like ATPase domain D3U04_RS07995 PF00672 HAMP domain D3U04_RS07995 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS07995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS08000 PF00171 Aldehyde dehydrogenase family D3U04_RS08010 PF00202 Aminotransferase class-III D3U04_RS08015 PF00296 Luciferase-like monooxygenase D3U04_RS08020 PF01951 Archease protein family (MTH1598/TM1083) D3U04_RS08025 PF01139 tRNA-splicing ligase RtcB D3U04_RS08045 PF05368 NmrA-like family D3U04_RS08070 PF01494 FAD binding domain D3U04_RS08075 PF03951 Glutamine synthetase, beta-Grasp domain D3U04_RS08075 PF00120 Glutamine synthetase, catalytic domain D3U04_RS08100 PF02861 Clp amino terminal domain, pathogenicity island component D3U04_RS08100 PF10431 C-terminal, D2-small domain, of ClpB protein D3U04_RS08100 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS08100 PF17871 AAA lid domain D3U04_RS08100 PF07724 AAA domain (Cdc48 subfamily) D3U04_RS08130 PF00553 Cellulose binding domain D3U04_RS08135 PF02082 Transcriptional regulator D3U04_RS08140 PF07690 Major Facilitator Superfamily D3U04_RS08150 PF00933 Glycosyl hydrolase family 3 N terminal domain D3U04_RS08150 PF14310 Fibronectin type III-like domain D3U04_RS08150 PF01915 Glycosyl hydrolase family 3 C-terminal domain D3U04_RS08160 PF02566 OsmC-like protein D3U04_RS08195 PF00271 Helicase conserved C-terminal domain D3U04_RS08195 PF08494 DEAD/H associated D3U04_RS08195 PF00270 DEAD/DEAH box helicase D3U04_RS08220 PF00069 Protein kinase domain D3U04_RS08220 PF00211 Adenylate and Guanylate cyclase catalytic domain D3U04_RS08225 PF03793 PASTA domain D3U04_RS08225 PF00069 Protein kinase domain D3U04_RS08250 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS08255 PF02803 Thiolase, C-terminal domain D3U04_RS08255 PF00108 Thiolase, N-terminal domain D3U04_RS08265 PF01575 MaoC like domain D3U04_RS08270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS08270 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS08270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS08275 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS08275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS08275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS08280 PF00491 Arginase family D3U04_RS08305 PF01494 FAD binding domain D3U04_RS08310 PF04237 YjbR D3U04_RS08315 PF04542 Sigma-70 region 2 D3U04_RS08315 PF08281 Sigma-70, region 4 D3U04_RS08315 PF12680 SnoaL-like domain D3U04_RS08345 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS08345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS08345 PF00672 HAMP domain D3U04_RS08350 PF00072 Response regulator receiver domain D3U04_RS08350 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS08375 PF00296 Luciferase-like monooxygenase D3U04_RS08385 PF00067 Cytochrome P450 D3U04_RS08425 PF00703 Glycosyl hydrolases family 2 D3U04_RS08425 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain D3U04_RS08425 PF16990 Carbohydrate binding module (family 35) D3U04_RS08425 PF02837 Glycosyl hydrolases family 2, sugar binding domain D3U04_RS08435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3U04_RS08435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3U04_RS08445 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS08450 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS08455 PF01263 Aldose 1-epimerase D3U04_RS08460 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS08465 PF01370 NAD dependent epimerase/dehydratase family D3U04_RS08470 PF00701 Dihydrodipicolinate synthetase family D3U04_RS08475 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3U04_RS08475 PF13378 Enolase C-terminal domain-like D3U04_RS08485 PF00171 Aldehyde dehydrogenase family D3U04_RS08490 PF07859 alpha/beta hydrolase fold D3U04_RS08490 PF13472 GDSL-like Lipase/Acylhydrolase family D3U04_RS08495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3U04_RS08495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3U04_RS08510 PF01061 ABC-2 type transporter D3U04_RS08515 PF00005 ABC transporter D3U04_RS08515 PF13732 Domain of unknown function (DUF4162) D3U04_RS08535 PF00005 ABC transporter D3U04_RS08535 PF13732 Domain of unknown function (DUF4162) D3U04_RS08540 PF01061 ABC-2 type transporter D3U04_RS08580 PF00293 NUDIX domain D3U04_RS08595 PF00589 Phage integrase family D3U04_RS08595 PF14659 Phage integrase, N-terminal SAM-like domain D3U04_RS08615 PF00781 Diacylglycerol kinase catalytic domain D3U04_RS08625 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS08625 PF00072 Response regulator receiver domain D3U04_RS08715 PF02146 Sir2 family D3U04_RS08735 PF12826 Helix-hairpin-helix motif D3U04_RS08735 PF01653 NAD-dependent DNA ligase adenylation domain D3U04_RS08735 PF03120 NAD-dependent DNA ligase OB-fold domain D3U04_RS08735 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D3U04_RS08735 PF00533 BRCA1 C Terminus (BRCT) domain D3U04_RS08740 PF03951 Glutamine synthetase, beta-Grasp domain D3U04_RS08740 PF00120 Glutamine synthetase, catalytic domain D3U04_RS08750 PF05697 Bacterial trigger factor protein (TF) D3U04_RS08750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3U04_RS08750 PF05698 Bacterial trigger factor protein (TF) C-terminus D3U04_RS08755 PF00574 Clp protease D3U04_RS08760 PF00574 Clp protease D3U04_RS08765 PF10431 C-terminal, D2-small domain, of ClpB protein D3U04_RS08765 PF07724 AAA domain (Cdc48 subfamily) D3U04_RS08765 PF06689 ClpX C4-type zinc finger D3U04_RS08770 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS08770 PF00072 Response regulator receiver domain D3U04_RS08780 PF00072 Response regulator receiver domain D3U04_RS08780 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS08785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS08785 PF07730 Histidine kinase D3U04_RS08785 PF05384 Sensor protein DegS D3U04_RS08795 PF00133 tRNA synthetases class I (I, L, M and V) D3U04_RS08795 PF08264 Anticodon-binding domain of tRNA D3U04_RS08795 PF10458 Valyl tRNA synthetase tRNA binding arm D3U04_RS08800 PF08245 Mur ligase middle domain D3U04_RS08800 PF02875 Mur ligase family, glutamate ligase domain D3U04_RS08810 PF00334 Nucleoside diphosphate kinase D3U04_RS08830 PF03717 Penicillin-binding Protein dimerisation domain D3U04_RS08830 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS08835 PF01098 Cell cycle protein D3U04_RS08850 PF10150 Ribonuclease E/G family D3U04_RS08855 PF00829 Ribosomal prokaryotic L21 protein D3U04_RS08860 PF01016 Ribosomal L27 protein D3U04_RS08865 PF09269 Domain of unknown function (DUF1967) D3U04_RS08865 PF01018 GTP1/OBG D3U04_RS08865 PF01926 50S ribosome-binding GTPase D3U04_RS08870 PF01472 PUA domain D3U04_RS08870 PF00696 Amino acid kinase family D3U04_RS08875 PF00171 Aldehyde dehydrogenase family D3U04_RS08885 PF00107 Zinc-binding dehydrogenase D3U04_RS08885 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS08890 PF03358 NADPH-dependent FMN reductase D3U04_RS08895 PF07690 Major Facilitator Superfamily D3U04_RS08900 PF01435 Peptidase family M48 D3U04_RS08905 PF01467 Cytidylyltransferase-like D3U04_RS08915 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS08935 PF00753 Metallo-beta-lactamase superfamily D3U04_RS08955 PF04463 Protein of unknown function (DUF523) D3U04_RS08960 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3U04_RS08965 PF00106 short chain dehydrogenase D3U04_RS08970 PF11583 P-aminobenzoate N-oxygenase AurF D3U04_RS08975 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS08980 PF12704 MacB-like periplasmic core domain D3U04_RS08980 PF02687 FtsX-like permease family D3U04_RS08980 PF00005 ABC transporter D3U04_RS08985 PF00005 ABC transporter D3U04_RS08985 PF02687 FtsX-like permease family D3U04_RS08985 PF12704 MacB-like periplasmic core domain D3U04_RS09000 PF17853 GGDEF-like domain D3U04_RS09000 PF13556 PucR C-terminal helix-turn-helix domain D3U04_RS09045 PF00005 ABC transporter D3U04_RS09055 PF02405 Permease MlaE D3U04_RS09080 PF02470 MlaD protein D3U04_RS09110 PF00155 Aminotransferase class I and II D3U04_RS09115 PF13307 Helicase C-terminal domain D3U04_RS09125 PF01804 Penicillin amidase D3U04_RS09170 PF04545 Sigma-70, region 4 D3U04_RS09170 PF04542 Sigma-70 region 2 D3U04_RS09175 PF00571 CBS domain D3U04_RS09180 PF13847 Methyltransferase domain D3U04_RS09185 PF05199 GMC oxidoreductase D3U04_RS09185 PF00732 GMC oxidoreductase D3U04_RS09190 PF00202 Aminotransferase class-III D3U04_RS09200 PF00067 Cytochrome P450 D3U04_RS09225 PF13603 Leucyl-tRNA synthetase, Domain 2 D3U04_RS09225 PF08264 Anticodon-binding domain of tRNA D3U04_RS09225 PF00133 tRNA synthetases class I (I, L, M and V) D3U04_RS09225 PF09334 tRNA synthetases class I (M) D3U04_RS09235 PF01726 LexA DNA binding domain D3U04_RS09235 PF00717 Peptidase S24-like D3U04_RS09245 PF03477 ATP cone domain D3U04_RS09250 PF02867 Ribonucleotide reductase, barrel domain D3U04_RS09250 PF08471 Class II vitamin B12-dependent ribonucleotide reductase D3U04_RS09260 PF13460 NAD(P)H-binding D3U04_RS09265 PF00248 Aldo/keto reductase family D3U04_RS09275 PF02342 TerD domain D3U04_RS09285 PF01351 Ribonuclease HII D3U04_RS09290 PF17866 AAA lid domain D3U04_RS09290 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS09300 PF02626 Carboxyltransferase domain, subdomain A and B D3U04_RS09305 PF02682 Carboxyltransferase domain, subdomain C and D D3U04_RS09310 PF03746 LamB/YcsF family D3U04_RS09315 PF07286 Protein of unknown function (DUF1445) D3U04_RS09390 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS09390 PF03704 Bacterial transcriptional activator domain D3U04_RS09390 PF00931 NB-ARC domain D3U04_RS09410 PF07228 Stage II sporulation protein E (SpoIIE) D3U04_RS09410 PF00672 HAMP domain D3U04_RS09415 PF04539 Sigma-70 region 3 D3U04_RS09415 PF04545 Sigma-70, region 4 D3U04_RS09415 PF00140 Sigma-70 factor, region 1.2 D3U04_RS09415 PF04542 Sigma-70 region 2 D3U04_RS09425 PF03883 Peroxide stress protein YaaA D3U04_RS09435 PF00986 DNA gyrase B subunit, carboxyl terminus D3U04_RS09435 PF00204 DNA gyrase B D3U04_RS09435 PF01751 Toprim domain D3U04_RS09435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS09440 PF13520 Amino acid permease D3U04_RS09460 PF02861 Clp amino terminal domain, pathogenicity island component D3U04_RS09470 PF03989 DNA gyrase C-terminal domain, beta-propeller D3U04_RS09470 PF00521 DNA gyrase/topoisomerase IV, subunit A D3U04_RS09475 PF01070 FMN-dependent dehydrogenase D3U04_RS09485 PF01965 DJ-1/PfpI family D3U04_RS09500 PF09383 NIL domain D3U04_RS09500 PF00005 ABC transporter D3U04_RS09505 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS09510 PF03180 NLPA lipoprotein D3U04_RS09540 PF04055 Radical SAM superfamily D3U04_RS09540 PF06969 HemN C-terminal domain D3U04_RS09565 PF08241 Methyltransferase domain D3U04_RS09640 PF17854 FtsK alpha domain D3U04_RS09640 PF09397 Ftsk gamma domain D3U04_RS09640 PF01580 FtsK/SpoIIIE family D3U04_RS09670 PF00437 Type II/IV secretion system protein D3U04_RS09715 PF00271 Helicase conserved C-terminal domain D3U04_RS09715 PF09369 Domain of unknown function (DUF1998) D3U04_RS09715 PF00270 DEAD/DEAH box helicase D3U04_RS09720 PF01740 STAS domain D3U04_RS09725 PF13581 Histidine kinase-like ATPase domain D3U04_RS09745 PF03030 Inorganic H+ pyrophosphatase D3U04_RS09750 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS09765 PF01022 Bacterial regulatory protein, arsR family D3U04_RS09780 PF07690 Major Facilitator Superfamily D3U04_RS09795 PF06271 RDD family D3U04_RS09805 PF00005 ABC transporter D3U04_RS09825 PF03781 Sulfatase-modifying factor enzyme 1 D3U04_RS09830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3U04_RS09830 PF00384 Molybdopterin oxidoreductase D3U04_RS09830 PF01568 Molydopterin dinucleotide binding domain D3U04_RS09845 PF01145 SPFH domain / Band 7 family D3U04_RS09850 PF04203 Sortase domain D3U04_RS09870 PF03091 CutA1 divalent ion tolerance protein D3U04_RS09875 PF01475 Ferric uptake regulator family D3U04_RS09880 PF00266 Aminotransferase class-V D3U04_RS09885 PF09587 Bacterial capsule synthesis protein PGA_cap D3U04_RS09895 PF13411 MerR HTH family regulatory protein D3U04_RS09895 PF06445 GyrI-like small molecule binding domain D3U04_RS09910 PF04542 Sigma-70 region 2 D3U04_RS09910 PF08281 Sigma-70, region 4 D3U04_RS09930 PF00072 Response regulator receiver domain D3U04_RS09930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS09930 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS09930 PF08448 PAS fold D3U04_RS09930 PF13426 PAS domain D3U04_RS09935 PF00232 Glycosyl hydrolase family 1 D3U04_RS09940 PF17925 Tetracyclin repressor-like, C-terminal domain D3U04_RS09940 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS09955 PF03330 Lytic transglycolase D3U04_RS09965 PF06803 Protein of unknown function (DUF1232) D3U04_RS09970 PF01614 Bacterial transcriptional regulator D3U04_RS09970 PF09339 IclR helix-turn-helix domain D3U04_RS09985 PF00501 AMP-binding enzyme D3U04_RS09990 PF03176 MMPL family D3U04_RS10155 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase D3U04_RS10155 PF03033 Glycosyltransferase family 28 N-terminal domain D3U04_RS10160 PF07690 Major Facilitator Superfamily D3U04_RS10170 PF14765 Polyketide synthase dehydratase D3U04_RS10170 PF00550 Phosphopantetheine attachment site D3U04_RS10170 PF08659 KR domain D3U04_RS10170 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS10170 PF00698 Acyl transferase domain D3U04_RS10170 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS10170 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS10175 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS10175 PF00107 Zinc-binding dehydrogenase D3U04_RS10180 PF00293 NUDIX domain D3U04_RS10205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS10205 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS10210 PF04264 YceI-like domain D3U04_RS10215 PF08241 Methyltransferase domain D3U04_RS10215 PF12697 Alpha/beta hydrolase family D3U04_RS10220 PF08281 Sigma-70, region 4 D3U04_RS10220 PF04542 Sigma-70 region 2 D3U04_RS10225 PF00501 AMP-binding enzyme D3U04_RS10225 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS10230 PF03793 PASTA domain D3U04_RS10230 PF00069 Protein kinase domain D3U04_RS10235 PF07497 Rho termination factor, RNA-binding domain D3U04_RS10235 PF07498 Rho termination factor, N-terminal domain D3U04_RS10235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3U04_RS10245 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS10260 PF03704 Bacterial transcriptional activator domain D3U04_RS10260 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS10260 PF00931 NB-ARC domain D3U04_RS10280 PF00106 short chain dehydrogenase D3U04_RS10310 PF00005 ABC transporter D3U04_RS10320 PF02553 Cobalt transport protein component CbiN D3U04_RS10325 PF01891 Cobalt uptake substrate-specific transmembrane region D3U04_RS10335 PF02694 Uncharacterised BCR, YnfA/UPF0060 family D3U04_RS10340 PF01522 Polysaccharide deacetylase D3U04_RS10355 PF00069 Protein kinase domain D3U04_RS10355 PF03793 PASTA domain D3U04_RS10360 PF00672 HAMP domain D3U04_RS10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS10360 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS10360 PF01627 Hpt domain D3U04_RS10360 PF00072 Response regulator receiver domain D3U04_RS10360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) D3U04_RS10365 PF08448 PAS fold D3U04_RS10365 PF13466 STAS domain D3U04_RS10365 PF07228 Stage II sporulation protein E (SpoIIE) D3U04_RS10365 PF13581 Histidine kinase-like ATPase domain D3U04_RS10385 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS10385 PF00912 Transglycosylase D3U04_RS10410 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS10455 PF00005 ABC transporter D3U04_RS10515 PF13426 PAS domain D3U04_RS10515 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS10535 PF12695 Alpha/beta hydrolase family D3U04_RS10545 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS10550 PF00501 AMP-binding enzyme D3U04_RS10550 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS10595 PF00571 CBS domain D3U04_RS10595 PF01595 Cyclin M transmembrane N-terminal domain D3U04_RS10600 PF01595 Cyclin M transmembrane N-terminal domain D3U04_RS10600 PF03471 Transporter associated domain D3U04_RS10600 PF00571 CBS domain D3U04_RS10615 PF00107 Zinc-binding dehydrogenase D3U04_RS10615 PF16884 N-terminal domain of oxidoreductase D3U04_RS10620 PF13411 MerR HTH family regulatory protein D3U04_RS10635 PF13393 Histidyl-tRNA synthetase D3U04_RS10635 PF03129 Anticodon binding domain D3U04_RS10640 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3U04_RS10650 PF02515 CoA-transferase family III D3U04_RS10710 PF13569 Domain of unknown function (DUF4132) D3U04_RS10715 PF13569 Domain of unknown function (DUF4132) D3U04_RS10720 PF13569 Domain of unknown function (DUF4132) D3U04_RS10735 PF05973 Phage derived protein Gp49-like (DUF891) D3U04_RS10745 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D3U04_RS10745 PF00361 Proton-conducting membrane transporter D3U04_RS10745 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3U04_RS10745 PF13244 Domain of unknown function (DUF4040) D3U04_RS10750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3U04_RS10755 PF00361 Proton-conducting membrane transporter D3U04_RS10765 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D3U04_RS10770 PF03334 Na+/H+ antiporter subunit D3U04_RS10775 PF01594 AI-2E family transporter D3U04_RS10805 PF01329 Pterin 4 alpha carbinolamine dehydratase D3U04_RS10810 PF01329 Pterin 4 alpha carbinolamine dehydratase D3U04_RS10830 PF00072 Response regulator receiver domain D3U04_RS10830 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS10835 PF07690 Major Facilitator Superfamily D3U04_RS10845 PF10518 TAT (twin-arginine translocation) pathway signal sequence D3U04_RS10845 PF07732 Multicopper oxidase D3U04_RS10845 PF07731 Multicopper oxidase D3U04_RS10845 PF00394 Multicopper oxidase D3U04_RS10860 PF03060 Nitronate monooxygenase D3U04_RS10870 PF01144 Coenzyme A transferase D3U04_RS10875 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS10885 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS10890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS10890 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS10890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS10895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS10895 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS10895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS10910 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS10915 PF13732 Domain of unknown function (DUF4162) D3U04_RS10915 PF00005 ABC transporter D3U04_RS10925 PF04434 SWIM zinc finger D3U04_RS10925 PF00271 Helicase conserved C-terminal domain D3U04_RS10925 PF00176 SNF2 family N-terminal domain D3U04_RS10945 PF01750 Hydrogenase maturation protease D3U04_RS10955 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D3U04_RS10955 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D3U04_RS10960 PF00374 Nickel-dependent hydrogenase D3U04_RS10980 PF01455 HupF/HypC family D3U04_RS10985 PF01924 Hydrogenase formation hypA family D3U04_RS10990 PF00586 AIR synthase related protein, N-terminal domain D3U04_RS10990 PF02769 AIR synthase related protein, C-terminal domain D3U04_RS11000 PF08281 Sigma-70, region 4 D3U04_RS11000 PF04542 Sigma-70 region 2 D3U04_RS11010 PF17788 HypF Kae1-like domain D3U04_RS11010 PF01300 Telomere recombination D3U04_RS11010 PF07503 HypF finger D3U04_RS11010 PF00708 Acylphosphatase D3U04_RS11015 PF13580 SIS domain D3U04_RS11025 PF13580 SIS domain D3U04_RS11035 PF03442 Carbohydrate binding domain X2 D3U04_RS11035 PF00942 Cellulose binding domain D3U04_RS11050 PF00296 Luciferase-like monooxygenase D3U04_RS11055 PF01341 Glycosyl hydrolases family 6 D3U04_RS11055 PF00041 Fibronectin type III domain D3U04_RS11055 PF00553 Cellulose binding domain D3U04_RS11060 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS11065 PF02011 Glycosyl hydrolase family 48 D3U04_RS11065 PF00041 Fibronectin type III domain D3U04_RS11065 PF00553 Cellulose binding domain D3U04_RS11070 PF08281 Sigma-70, region 4 D3U04_RS11070 PF04542 Sigma-70 region 2 D3U04_RS11085 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading D3U04_RS11085 PF00553 Cellulose binding domain D3U04_RS11090 PF00150 Cellulase (glycosyl hydrolase family 5) D3U04_RS11090 PF00553 Cellulose binding domain D3U04_RS11095 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS11100 PF00232 Glycosyl hydrolase family 1 D3U04_RS11105 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS11110 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS11120 PF00457 Glycosyl hydrolases family 11 D3U04_RS11120 PF03422 Carbohydrate binding module (family 6) D3U04_RS11135 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS11140 PF01547 Bacterial extracellular solute-binding protein D3U04_RS11145 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS11150 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS11180 PF00012 Hsp70 protein D3U04_RS11195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3U04_RS11195 PF00005 ABC transporter D3U04_RS11200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3U04_RS11200 PF00005 ABC transporter D3U04_RS11205 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS11210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3U04_RS11220 PF01740 STAS domain D3U04_RS11225 PF12146 Serine aminopeptidase, S33 D3U04_RS11230 PF00535 Glycosyl transferase family 2 D3U04_RS11235 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase D3U04_RS11260 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS11260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS11260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS11285 PF07728 AAA domain (dynein-related subfamily) D3U04_RS11290 PF05762 VWA domain containing CoxE-like protein D3U04_RS11310 PF01965 DJ-1/PfpI family D3U04_RS11320 PF01546 Peptidase family M20/M25/M40 D3U04_RS11320 PF07687 Peptidase dimerisation domain D3U04_RS11340 PF01751 Toprim domain D3U04_RS11340 PF13368 Topoisomerase C-terminal repeat D3U04_RS11340 PF01131 DNA topoisomerase D3U04_RS11345 PF02223 Thymidylate kinase D3U04_RS11350 PF09115 DNA polymerase III, delta subunit, C terminal D3U04_RS11355 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3U04_RS11370 PF04468 PSP1 C-terminal conserved region D3U04_RS11380 PF00561 alpha/beta hydrolase fold D3U04_RS11410 PF00877 NlpC/P60 family D3U04_RS11415 PF00719 Inorganic pyrophosphatase D3U04_RS11420 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D3U04_RS11430 PF09179 TilS substrate binding domain D3U04_RS11430 PF01171 PP-loop family D3U04_RS11435 PF00156 Phosphoribosyl transferase domain D3U04_RS11440 PF17862 AAA+ lid domain D3U04_RS11440 PF06480 FtsH Extracellular D3U04_RS11440 PF01434 Peptidase family M41 D3U04_RS11440 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS11445 PF01227 GTP cyclohydrolase I D3U04_RS11450 PF00809 Pterin binding enzyme D3U04_RS11460 PF02152 Dihydroneopterin aldolase D3U04_RS11465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D3U04_RS11480 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D3U04_RS11500 PF07730 Histidine kinase D3U04_RS11505 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS11505 PF00072 Response regulator receiver domain D3U04_RS11510 PF00005 ABC transporter D3U04_RS11525 PF02569 Pantoate-beta-alanine ligase D3U04_RS11530 PF02261 Aspartate decarboxylase D3U04_RS11535 PF00890 FAD binding domain D3U04_RS11535 PF02910 Fumarate reductase flavoprotein C-term D3U04_RS11540 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D3U04_RS11540 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D3U04_RS11545 PF03309 Type III pantothenate kinase D3U04_RS11555 PF00152 tRNA synthetases class II (D, K and N) D3U04_RS11555 PF01336 OB-fold nucleic acid binding domain D3U04_RS11565 PF00877 NlpC/P60 family D3U04_RS11570 PF00583 Acetyltransferase (GNAT) family D3U04_RS11590 PF02861 Clp amino terminal domain, pathogenicity island component D3U04_RS11590 PF10431 C-terminal, D2-small domain, of ClpB protein D3U04_RS11590 PF17871 AAA lid domain D3U04_RS11590 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS11590 PF07724 AAA domain (Cdc48 subfamily) D3U04_RS11610 PF01261 Xylose isomerase-like TIM barrel D3U04_RS11655 PF10635 DisA bacterial checkpoint controller linker region D3U04_RS11655 PF02457 DisA bacterial checkpoint controller nucleotide-binding D3U04_RS11655 PF12826 Helix-hairpin-helix motif D3U04_RS11660 PF18073 Rubredoxin metal binding domain D3U04_RS11660 PF06745 KaiC D3U04_RS11665 PF08003 Protein of unknown function (DUF1698) D3U04_RS11670 PF01261 Xylose isomerase-like TIM barrel D3U04_RS11675 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS11675 PF13977 BetI-type transcriptional repressor, C-terminal D3U04_RS11680 PF00005 ABC transporter D3U04_RS11690 PF03816 Cell envelope-related transcriptional attenuator domain D3U04_RS11695 PF01619 Proline dehydrogenase D3U04_RS11700 PF03807 NADP oxidoreductase coenzyme F420-dependent D3U04_RS11700 PF14748 Pyrroline-5-carboxylate reductase dimerisation D3U04_RS11710 PF13533 Biotin-lipoyl like D3U04_RS11715 PF00005 ABC transporter D3U04_RS11720 PF02687 FtsX-like permease family D3U04_RS11720 PF00005 ABC transporter D3U04_RS11720 PF12704 MacB-like periplasmic core domain D3U04_RS11725 PF07859 alpha/beta hydrolase fold D3U04_RS11730 PF00850 Histone deacetylase domain D3U04_RS11735 PF15698 Phosphatase D3U04_RS11740 PF12728 Helix-turn-helix domain D3U04_RS11750 PF01370 NAD dependent epimerase/dehydratase family D3U04_RS11755 PF01553 Acyltransferase D3U04_RS11765 PF04542 Sigma-70 region 2 D3U04_RS11765 PF08281 Sigma-70, region 4 D3U04_RS11780 PF06971 Putative DNA-binding protein N-terminus D3U04_RS11780 PF02629 CoA binding domain D3U04_RS11785 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D3U04_RS11785 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D3U04_RS11785 PF01488 Shikimate / quinate 5-dehydrogenase D3U04_RS11790 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D3U04_RS11790 PF03900 Porphobilinogen deaminase, C-terminal domain D3U04_RS11795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D3U04_RS11795 PF10414 Sirohaem synthase dimerisation region D3U04_RS11795 PF14824 Sirohaem biosynthesis protein central D3U04_RS11800 PF00490 Delta-aminolevulinic acid dehydratase D3U04_RS11810 PF03793 PASTA domain D3U04_RS11810 PF00069 Protein kinase domain D3U04_RS11815 PF00202 Aminotransferase class-III D3U04_RS11820 PF03466 LysR substrate binding domain D3U04_RS11820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS11825 PF00069 Protein kinase domain D3U04_RS11825 PF13462 Thioredoxin D3U04_RS11830 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS11835 PF08534 Redoxin D3U04_RS11840 PF02683 Cytochrome C biogenesis protein transmembrane region D3U04_RS11845 PF05140 ResB-like family D3U04_RS11850 PF01578 Cytochrome C assembly protein D3U04_RS11875 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS11875 PF00585 C-terminal regulatory domain of Threonine dehydratase D3U04_RS11890 PF01494 FAD binding domain D3U04_RS11895 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D3U04_RS11900 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D3U04_RS11905 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D3U04_RS11910 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D3U04_RS11920 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region D3U04_RS11920 PF10531 SLBB domain D3U04_RS11920 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D3U04_RS11925 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D3U04_RS11925 PF01568 Molydopterin dinucleotide binding domain D3U04_RS11925 PF00384 Molybdopterin oxidoreductase D3U04_RS11930 PF00146 NADH dehydrogenase D3U04_RS11935 PF12838 4Fe-4S dicluster domain D3U04_RS11940 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D3U04_RS11945 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D3U04_RS11950 PF00361 Proton-conducting membrane transporter D3U04_RS11950 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3U04_RS11955 PF00361 Proton-conducting membrane transporter D3U04_RS11960 PF00361 Proton-conducting membrane transporter D3U04_RS11965 PF00348 Polyprenyl synthetase D3U04_RS11975 PF00175 Oxidoreductase NAD-binding domain D3U04_RS11975 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS11975 PF00970 Oxidoreductase FAD-binding domain D3U04_RS11985 PF00892 EamA-like transporter family D3U04_RS11990 PF01625 Peptide methionine sulfoxide reductase D3U04_RS12000 PF01381 Helix-turn-helix D3U04_RS12000 PF07883 Cupin domain D3U04_RS12010 PF00720 Subtilisin inhibitor-like D3U04_RS12025 PF07690 Major Facilitator Superfamily D3U04_RS12035 PF07690 Major Facilitator Superfamily D3U04_RS12045 PF03358 NADPH-dependent FMN reductase D3U04_RS12055 PF00005 ABC transporter D3U04_RS12065 PF07690 Major Facilitator Superfamily D3U04_RS12075 PF07549 SecD/SecF GG Motif D3U04_RS12075 PF02355 Protein export membrane protein D3U04_RS12080 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3U04_RS12085 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg D3U04_RS12085 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase D3U04_RS12085 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II D3U04_RS12105 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 D3U04_RS12120 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D3U04_RS12125 PF00146 NADH dehydrogenase D3U04_RS12130 PF00037 4Fe-4S binding domain D3U04_RS12135 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 D3U04_RS12145 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D3U04_RS12145 PF00361 Proton-conducting membrane transporter D3U04_RS12150 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus D3U04_RS12150 PF00361 Proton-conducting membrane transporter D3U04_RS12155 PF00361 Proton-conducting membrane transporter D3U04_RS12160 PF01435 Peptidase family M48 D3U04_RS12210 PF04255 Protein of unknown function (DUF433) D3U04_RS12400 PF01555 DNA methylase D3U04_RS12525 PF02899 Phage integrase, N-terminal SAM-like domain D3U04_RS12525 PF00589 Phage integrase family D3U04_RS12530 PF04461 Protein of unknown function (DUF520) D3U04_RS12555 PF09397 Ftsk gamma domain D3U04_RS12555 PF01580 FtsK/SpoIIIE family D3U04_RS12555 PF17854 FtsK alpha domain D3U04_RS12570 PF07702 UTRA domain D3U04_RS12570 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS12595 PF03781 Sulfatase-modifying factor enzyme 1 D3U04_RS12600 PF00561 alpha/beta hydrolase fold D3U04_RS12605 PF07730 Histidine kinase D3U04_RS12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS12610 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS12610 PF00072 Response regulator receiver domain D3U04_RS12625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS12625 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS12625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS12655 PF00471 Ribosomal protein L33 D3U04_RS12660 PF13452 N-terminal half of MaoC dehydratase D3U04_RS12670 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D3U04_RS12670 PF01565 FAD binding domain D3U04_RS12675 PF07729 FCD domain D3U04_RS12675 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS12680 PF00962 Adenosine/AMP deaminase D3U04_RS12685 PF00155 Aminotransferase class I and II D3U04_RS12695 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D3U04_RS12705 PF03946 Ribosomal protein L11, N-terminal domain D3U04_RS12705 PF00298 Ribosomal protein L11, RNA binding domain D3U04_RS12710 PF00687 Ribosomal protein L1p/L10e family D3U04_RS12725 PF00466 Ribosomal protein L10 D3U04_RS12730 PF00542 Ribosomal protein L7/L12 C-terminal domain D3U04_RS12730 PF16320 Ribosomal protein L7/L12 dimerisation domain D3U04_RS12740 PF02405 Permease MlaE D3U04_RS12745 PF02405 Permease MlaE D3U04_RS12790 PF10385 RNA polymerase beta subunit external 1 domain D3U04_RS12790 PF00562 RNA polymerase Rpb2, domain 6 D3U04_RS12790 PF04563 RNA polymerase beta subunit D3U04_RS12790 PF04565 RNA polymerase Rpb2, domain 3 D3U04_RS12790 PF04561 RNA polymerase Rpb2, domain 2 D3U04_RS12790 PF04560 RNA polymerase Rpb2, domain 7 D3U04_RS12795 PF04997 RNA polymerase Rpb1, domain 1 D3U04_RS12795 PF00623 RNA polymerase Rpb1, domain 2 D3U04_RS12795 PF04983 RNA polymerase Rpb1, domain 3 D3U04_RS12795 PF04998 RNA polymerase Rpb1, domain 5 D3U04_RS12795 PF05000 RNA polymerase Rpb1, domain 4 D3U04_RS12815 PF00164 Ribosomal protein S12/S23 D3U04_RS12820 PF00177 Ribosomal protein S7p/S5e D3U04_RS12825 PF03144 Elongation factor Tu domain 2 D3U04_RS12825 PF00009 Elongation factor Tu GTP binding domain D3U04_RS12825 PF03764 Elongation factor G, domain IV D3U04_RS12825 PF14492 Elongation Factor G, domain II D3U04_RS12825 PF00679 Elongation factor G C-terminus D3U04_RS12830 PF00009 Elongation factor Tu GTP binding domain D3U04_RS12830 PF03144 Elongation factor Tu domain 2 D3U04_RS12830 PF03143 Elongation factor Tu C-terminal domain D3U04_RS12835 PF00338 Ribosomal protein S10p/S20e D3U04_RS12840 PF00297 Ribosomal protein L3 D3U04_RS12845 PF00573 Ribosomal protein L4/L1 family D3U04_RS12850 PF00276 Ribosomal protein L23 D3U04_RS12855 PF00181 Ribosomal Proteins L2, RNA binding domain D3U04_RS12855 PF03947 Ribosomal Proteins L2, C-terminal domain D3U04_RS12860 PF00203 Ribosomal protein S19 D3U04_RS12865 PF00237 Ribosomal protein L22p/L17e D3U04_RS12870 PF00189 Ribosomal protein S3, C-terminal domain D3U04_RS12870 PF07650 KH domain D3U04_RS12875 PF00252 Ribosomal protein L16p/L10e D3U04_RS12880 PF00831 Ribosomal L29 protein D3U04_RS12885 PF00366 Ribosomal protein S17 D3U04_RS12890 PF00238 Ribosomal protein L14p/L23e D3U04_RS12895 PF00467 KOW motif D3U04_RS12895 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D3U04_RS12900 PF00673 ribosomal L5P family C-terminus D3U04_RS12900 PF00281 Ribosomal protein L5 D3U04_RS12905 PF00253 Ribosomal protein S14p/S29e D3U04_RS12915 PF00410 Ribosomal protein S8 D3U04_RS12920 PF00347 Ribosomal protein L6 D3U04_RS12925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D3U04_RS12930 PF03719 Ribosomal protein S5, C-terminal domain D3U04_RS12930 PF00333 Ribosomal protein S5, N-terminal domain D3U04_RS12935 PF00327 Ribosomal protein L30p/L7e D3U04_RS12940 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D3U04_RS12945 PF00344 SecY translocase D3U04_RS12950 PF05191 Adenylate kinase, active site lid D3U04_RS12955 PF00557 Metallopeptidase family M24 D3U04_RS12965 PF00149 Calcineurin-like phosphoesterase D3U04_RS12975 PF01176 Translation initiation factor 1A / IF-1 D3U04_RS12980 PF00444 Ribosomal protein L36 D3U04_RS12985 PF00416 Ribosomal protein S13/S18 D3U04_RS12990 PF00411 Ribosomal protein S11 D3U04_RS12995 PF01479 S4 domain D3U04_RS12995 PF00163 Ribosomal protein S4/S9 N-terminal domain D3U04_RS13000 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D3U04_RS13000 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D3U04_RS13000 PF01000 RNA polymerase Rpb3/RpoA insert domain D3U04_RS13005 PF01196 Ribosomal protein L17 D3U04_RS13010 PF01416 tRNA pseudouridine synthase D3U04_RS13025 PF00188 Cysteine-rich secretory protein family D3U04_RS13030 PF00572 Ribosomal protein L13 D3U04_RS13035 PF00380 Ribosomal protein S9/S16 D3U04_RS13040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3U04_RS13040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3U04_RS13040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3U04_RS13040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3U04_RS13060 PF00005 ABC transporter D3U04_RS13060 PF13732 Domain of unknown function (DUF4162) D3U04_RS13080 PF13569 Domain of unknown function (DUF4132) D3U04_RS13085 PF00485 Phosphoribulokinase / Uridine kinase family D3U04_RS13090 PF01380 SIS domain D3U04_RS13115 PF01648 4'-phosphopantetheinyl transferase superfamily D3U04_RS13120 PF03853 YjeF-related protein N-terminus D3U04_RS13120 PF01256 Carbohydrate kinase D3U04_RS13125 PF01168 Alanine racemase, N-terminal domain D3U04_RS13125 PF00842 Alanine racemase, C-terminal domain D3U04_RS13135 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D3U04_RS13145 PF00583 Acetyltransferase (GNAT) family D3U04_RS13145 PF00814 Glycoprotease family D3U04_RS13150 PF00583 Acetyltransferase (GNAT) family D3U04_RS13155 PF00814 Glycoprotease family D3U04_RS13170 PF18096 THUMP domain-like D3U04_RS13175 PF00166 Chaperonin 10 Kd subunit D3U04_RS13180 PF00118 TCP-1/cpn60 chaperonin family D3U04_RS13185 PF04542 Sigma-70 region 2 D3U04_RS13185 PF04545 Sigma-70, region 4 D3U04_RS13200 PF00478 IMP dehydrogenase / GMP reductase domain D3U04_RS13200 PF00571 CBS domain D3U04_RS13205 PF00478 IMP dehydrogenase / GMP reductase domain D3U04_RS13210 PF01266 FAD dependent oxidoreductase D3U04_RS13210 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D3U04_RS13215 PF00171 Aldehyde dehydrogenase family D3U04_RS13220 PF05199 GMC oxidoreductase D3U04_RS13225 PF00117 Glutamine amidotransferase class-I D3U04_RS13225 PF02540 NAD synthase D3U04_RS13225 PF00958 GMP synthase C terminal domain D3U04_RS13235 PF02627 Carboxymuconolactone decarboxylase family D3U04_RS13240 PF00578 AhpC/TSA family D3U04_RS13255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS13255 PF03466 LysR substrate binding domain D3U04_RS13265 PF17102 Stealth protein CR3, conserved region 3 D3U04_RS13265 PF00534 Glycosyl transferases group 1 D3U04_RS13265 PF17103 Stealth protein CR4, conserved region 4 D3U04_RS13265 PF17101 Stealth protein CR1, conserved region 1 D3U04_RS13265 PF11380 Stealth protein CR2, conserved region 2 D3U04_RS13275 PF08241 Methyltransferase domain D3U04_RS13285 PF00941 FAD binding domain in molybdopterin dehydrogenase D3U04_RS13285 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3U04_RS13290 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3U04_RS13290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3U04_RS13295 PF01799 [2Fe-2S] binding domain D3U04_RS13295 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS13310 PF00375 Sodium:dicarboxylate symporter family D3U04_RS13325 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS13325 PF00072 Response regulator receiver domain D3U04_RS13330 PF01674 Lipase (class 2) D3U04_RS13350 PF00580 UvrD/REP helicase N-terminal domain D3U04_RS13350 PF13361 UvrD-like helicase C-terminal domain D3U04_RS13355 PF00381 PTS HPr component phosphorylation site D3U04_RS13355 PF00391 PEP-utilising enzyme, mobile domain D3U04_RS13355 PF03610 PTS system fructose IIA component D3U04_RS13355 PF05524 PEP-utilising enzyme, N-terminal D3U04_RS13360 PF02734 DAK2 domain D3U04_RS13365 PF02733 Dak1 domain D3U04_RS13370 PF02585 GlcNAc-PI de-N-acetylase D3U04_RS13375 PF01925 Sulfite exporter TauE/SafE D3U04_RS13385 PF08442 ATP-grasp domain D3U04_RS13385 PF00549 CoA-ligase D3U04_RS13390 PF00549 CoA-ligase D3U04_RS13390 PF02629 CoA binding domain D3U04_RS13405 PF00551 Formyl transferase D3U04_RS13410 PF01808 AICARFT/IMPCHase bienzyme D3U04_RS13410 PF02142 MGS-like domain D3U04_RS13415 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D3U04_RS13415 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D3U04_RS13435 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D3U04_RS13435 PF00056 lactate/malate dehydrogenase, NAD binding domain D3U04_RS13440 PF00183 Hsp90 protein D3U04_RS13440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS13450 PF01979 Amidohydrolase family D3U04_RS13455 PF01047 MarR family D3U04_RS13460 PF00288 GHMP kinases N terminal domain D3U04_RS13460 PF10509 Galactokinase galactose-binding signature D3U04_RS13460 PF08544 GHMP kinases C terminal D3U04_RS13465 PF01370 NAD dependent epimerase/dehydratase family D3U04_RS13470 PF00579 tRNA synthetases class I (W and Y) D3U04_RS13485 PF00768 D-alanyl-D-alanine carboxypeptidase D3U04_RS13490 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3U04_RS13495 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3U04_RS13495 PF01546 Peptidase family M20/M25/M40 D3U04_RS13505 PF00106 short chain dehydrogenase D3U04_RS13510 PF00069 Protein kinase domain D3U04_RS13560 PF00005 ABC transporter D3U04_RS13585 PF13462 Thioredoxin D3U04_RS13585 PF00069 Protein kinase domain D3U04_RS13590 PF00491 Arginase family D3U04_RS13600 PF13732 Domain of unknown function (DUF4162) D3U04_RS13600 PF00005 ABC transporter D3U04_RS13620 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS13625 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS13630 PF00005 ABC transporter D3U04_RS13635 PF02608 ABC transporter substrate-binding protein PnrA-like D3U04_RS13640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3U04_RS13645 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain D3U04_RS13645 PF00591 Glycosyl transferase family, a/b domain D3U04_RS13645 PF02885 Glycosyl transferase family, helical bundle domain D3U04_RS13650 PF00962 Adenosine/AMP deaminase D3U04_RS13660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3U04_RS13660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3U04_RS13660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3U04_RS13660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3U04_RS13665 PF01048 Phosphorylase superfamily D3U04_RS13675 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS13675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3U04_RS13695 PF18844 Bacterial archaeo-eukaryotic release factor family 2 D3U04_RS13700 PF00892 EamA-like transporter family D3U04_RS13715 PF03330 Lytic transglycolase D3U04_RS13725 PF00072 Response regulator receiver domain D3U04_RS13725 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS13730 PF02785 Biotin carboxylase C-terminal domain D3U04_RS13730 PF00364 Biotin-requiring enzyme D3U04_RS13730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3U04_RS13730 PF00289 Biotin carboxylase, N-terminal domain D3U04_RS13750 PF00005 ABC transporter D3U04_RS13750 PF13732 Domain of unknown function (DUF4162) D3U04_RS13805 PF01580 FtsK/SpoIIIE family D3U04_RS13810 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS13810 PF13305 Tetracyclin repressor-like, C-terminal domain D3U04_RS13830 PF00437 Type II/IV secretion system protein D3U04_RS13875 PF12833 Helix-turn-helix domain D3U04_RS13875 PF02805 Metal binding domain of Ada D3U04_RS13875 PF06029 AlkA N-terminal domain D3U04_RS13875 PF00730 HhH-GPD superfamily base excision DNA repair protein D3U04_RS13880 PF05199 GMC oxidoreductase D3U04_RS13880 PF00732 GMC oxidoreductase D3U04_RS13890 PF01936 NYN domain D3U04_RS13900 PF01039 Carboxyl transferase domain D3U04_RS13905 PF00311 Phosphoenolpyruvate carboxylase D3U04_RS13910 PF08279 HTH domain D3U04_RS13910 PF03099 Biotin/lipoate A/B protein ligase family D3U04_RS13910 PF02237 Biotin protein ligase C terminal domain D3U04_RS13915 PF16701 Adenylate cyclase regulatory domain D3U04_RS13915 PF00211 Adenylate and Guanylate cyclase catalytic domain D3U04_RS13980 PF00210 Ferritin-like domain D3U04_RS13990 PF00128 Alpha amylase, catalytic domain D3U04_RS13990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3U04_RS13995 PF00128 Alpha amylase, catalytic domain D3U04_RS14000 PF11941 Domain of unknown function (DUF3459) D3U04_RS14000 PF00128 Alpha amylase, catalytic domain D3U04_RS14005 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS14005 PF00072 Response regulator receiver domain D3U04_RS14010 PF00672 HAMP domain D3U04_RS14010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS14010 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS14020 PF02222 ATP-grasp domain D3U04_RS14020 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D3U04_RS14025 PF00731 AIR carboxylase D3U04_RS14030 PF13380 CoA binding domain D3U04_RS14035 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3U04_RS14035 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3U04_RS14035 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3U04_RS14040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS14040 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS14040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS14045 PF03816 Cell envelope-related transcriptional attenuator domain D3U04_RS14045 PF13399 LytR cell envelope-related transcriptional attenuator D3U04_RS14065 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D3U04_RS14080 PF12804 MobA-like NTP transferase domain D3U04_RS14085 PF00465 Iron-containing alcohol dehydrogenase D3U04_RS14095 PF00535 Glycosyl transferase family 2 D3U04_RS14100 PF13538 UvrD-like helicase C-terminal domain D3U04_RS14115 PF02824 TGS domain D3U04_RS14115 PF04607 Region found in RelA / SpoT proteins D3U04_RS14115 PF13291 ACT domain D3U04_RS14135 PF16385 Domain of unknown function D3U04_RS14135 PF00884 Sulfatase D3U04_RS14165 PF00535 Glycosyl transferase family 2 D3U04_RS14175 PF00535 Glycosyl transferase family 2 D3U04_RS14180 PF03102 NeuB family D3U04_RS14180 PF08666 SAF domain D3U04_RS14185 PF02348 Cytidylyltransferase D3U04_RS14190 PF01757 Acyltransferase family D3U04_RS14195 PF01050 Mannose-6-phosphate isomerase D3U04_RS14195 PF00483 Nucleotidyl transferase D3U04_RS14205 PF00535 Glycosyl transferase family 2 D3U04_RS14215 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D3U04_RS14220 PF01757 Acyltransferase family D3U04_RS14225 PF03816 Cell envelope-related transcriptional attenuator domain D3U04_RS14225 PF13399 LytR cell envelope-related transcriptional attenuator D3U04_RS14240 PF00535 Glycosyl transferase family 2 D3U04_RS14275 PF00067 Cytochrome P450 D3U04_RS14280 PF04389 Peptidase family M28 D3U04_RS14280 PF02225 PA domain D3U04_RS14315 PF00085 Thioredoxin D3U04_RS14325 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS14330 PF13439 Glycosyltransferase Family 4 D3U04_RS14330 PF00534 Glycosyl transferases group 1 D3U04_RS14335 PF00483 Nucleotidyl transferase D3U04_RS14345 PF03466 LysR substrate binding domain D3U04_RS14345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS14350 PF04055 Radical SAM superfamily D3U04_RS14360 PF00881 Nitroreductase family D3U04_RS14360 PF01996 F420-0:Gamma-glutamyl ligase D3U04_RS14365 PF01933 Uncharacterised protein family UPF0052 D3U04_RS14375 PF02467 Transcription factor WhiB D3U04_RS14380 PF00535 Glycosyl transferase family 2 D3U04_RS14400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3U04_RS14400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3U04_RS14400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3U04_RS14400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3U04_RS14405 PF03966 Trm112p-like protein D3U04_RS14410 PF01380 SIS domain D3U04_RS14410 PF10432 Bacterial phospho-glucose isomerase C-terminal SIS domain D3U04_RS14420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS14420 PF07730 Histidine kinase D3U04_RS14425 PF00072 Response regulator receiver domain D3U04_RS14425 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS14435 PF05221 S-adenosyl-L-homocysteine hydrolase D3U04_RS14435 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D3U04_RS14440 PF05221 S-adenosyl-L-homocysteine hydrolase D3U04_RS14440 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain D3U04_RS14450 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS14450 PF16859 Tetracyclin repressor-like, C-terminal domain D3U04_RS14455 PF00248 Aldo/keto reductase family D3U04_RS14490 PF17863 AAA lid domain D3U04_RS14490 PF07726 ATPase family associated with various cellular activities (AAA) D3U04_RS14495 PF14258 Domain of unknown function (DUF4350) D3U04_RS14515 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS14515 PF00072 Response regulator receiver domain D3U04_RS14525 PF10647 Lipoprotein LpqB beta-propeller domain D3U04_RS14525 PF10646 Sporulation and spore germination D3U04_RS14530 PF00156 Phosphoribosyl transferase domain D3U04_RS14535 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus D3U04_RS14535 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D3U04_RS14540 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS14540 PF00072 Response regulator receiver domain D3U04_RS14545 PF06224 Winged helix DNA-binding domain D3U04_RS14555 PF07517 SecA DEAD-like domain D3U04_RS14555 PF07516 SecA Wing and Scaffold domain D3U04_RS14555 PF02810 SEC-C motif D3U04_RS14555 PF01043 SecA preprotein cross-linking domain D3U04_RS14565 PF02378 Phosphotransferase system, EIIC D3U04_RS14570 PF07702 UTRA domain D3U04_RS14570 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS14575 PF01979 Amidohydrolase family D3U04_RS14580 PF01380 SIS domain D3U04_RS14585 PF00367 phosphotransferase system, EIIB D3U04_RS14590 PF00367 phosphotransferase system, EIIB D3U04_RS14590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D3U04_RS14595 PF13419 Haloacid dehalogenase-like hydrolase D3U04_RS14600 PF00381 PTS HPr component phosphorylation site D3U04_RS14605 PF02896 PEP-utilising enzyme, TIM barrel domain D3U04_RS14605 PF00391 PEP-utilising enzyme, mobile domain D3U04_RS14605 PF05524 PEP-utilising enzyme, N-terminal D3U04_RS14610 PF17755 UvrA DNA-binding domain D3U04_RS14610 PF17760 UvrA interaction domain D3U04_RS14610 PF00005 ABC transporter D3U04_RS14615 PF00933 Glycosyl hydrolase family 3 N terminal domain D3U04_RS14615 PF01915 Glycosyl hydrolase family 3 C-terminal domain D3U04_RS14625 PF01418 Helix-turn-helix domain, rpiR family D3U04_RS14625 PF01380 SIS domain D3U04_RS14630 PF01380 SIS domain D3U04_RS14635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS14635 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS14635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS14640 PF13419 Haloacid dehalogenase-like hydrolase D3U04_RS14650 PF00171 Aldehyde dehydrogenase family D3U04_RS14660 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS14660 PF00501 AMP-binding enzyme D3U04_RS14665 PF00877 NlpC/P60 family D3U04_RS14670 PF00400 WD domain, G-beta repeat D3U04_RS14670 PF00069 Protein kinase domain D3U04_RS14675 PF05088 Bacterial NAD-glutamate dehydrogenase D3U04_RS14690 PF03462 PCRF domain D3U04_RS14690 PF00472 RF-1 domain D3U04_RS14705 PF00005 ABC transporter D3U04_RS14710 PF18075 FtsX extracellular domain D3U04_RS14710 PF02687 FtsX-like permease family D3U04_RS14720 PF01668 SmpB protein D3U04_RS14745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS14745 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS14745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS14760 PF00535 Glycosyl transferase family 2 D3U04_RS14765 PF00534 Glycosyl transferases group 1 D3U04_RS14780 PF08241 Methyltransferase domain D3U04_RS14790 PF03060 Nitronate monooxygenase D3U04_RS14810 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS14815 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS14815 PF00501 AMP-binding enzyme D3U04_RS14830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3U04_RS14830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3U04_RS14835 PF00501 AMP-binding enzyme D3U04_RS14835 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS14840 PF01047 MarR family D3U04_RS14860 PF01425 Amidase D3U04_RS14895 PF09924 Uncharacterised conserved protein (DUF2156) D3U04_RS14895 PF00152 tRNA synthetases class II (D, K and N) D3U04_RS14895 PF01336 OB-fold nucleic acid binding domain D3U04_RS14895 PF16995 Transmembrane region of lysyl-tRNA synthetase D3U04_RS14900 PF00069 Protein kinase domain D3U04_RS14905 PF00069 Protein kinase domain D3U04_RS14910 PF00069 Protein kinase domain D3U04_RS14915 PF00072 Response regulator receiver domain D3U04_RS14915 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS14920 PF07730 Histidine kinase D3U04_RS14925 PF00205 Thiamine pyrophosphate enzyme, central domain D3U04_RS14925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3U04_RS14925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3U04_RS14930 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS14930 PF17925 Tetracyclin repressor-like, C-terminal domain D3U04_RS14935 PF01810 LysE type translocator D3U04_RS14950 PF07943 Penicillin-binding protein 5, C-terminal domain D3U04_RS14950 PF00768 D-alanyl-D-alanine carboxypeptidase D3U04_RS14980 PF03485 Arginyl tRNA synthetase N terminal domain D3U04_RS14980 PF00750 tRNA synthetases class I (R) D3U04_RS14980 PF05746 DALR anticodon binding domain D3U04_RS15000 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS15010 PF06441 Epoxide hydrolase N terminus D3U04_RS15030 PF00457 Glycosyl hydrolases family 11 D3U04_RS15040 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS15040 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS15040 PF00550 Phosphopantetheine attachment site D3U04_RS15040 PF14765 Polyketide synthase dehydratase D3U04_RS15040 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS15040 PF08659 KR domain D3U04_RS15040 PF00698 Acyl transferase domain D3U04_RS15040 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS15050 PF01613 Flavin reductase like domain D3U04_RS15055 PF06445 GyrI-like small molecule binding domain D3U04_RS15055 PF12833 Helix-turn-helix domain D3U04_RS15080 PF13416 Bacterial extracellular solute-binding protein D3U04_RS15085 PF08031 Berberine and berberine like D3U04_RS15085 PF01565 FAD binding domain D3U04_RS15100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS15100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS15100 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS15105 PF00296 Luciferase-like monooxygenase D3U04_RS15110 PF00067 Cytochrome P450 D3U04_RS15115 PF00501 AMP-binding enzyme D3U04_RS15115 PF00550 Phosphopantetheine attachment site D3U04_RS15115 PF00668 Condensation domain D3U04_RS15115 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS15120 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS15120 PF00668 Condensation domain D3U04_RS15120 PF00550 Phosphopantetheine attachment site D3U04_RS15120 PF00501 AMP-binding enzyme D3U04_RS15125 PF00221 Aromatic amino acid lyase D3U04_RS15135 PF01494 FAD binding domain D3U04_RS15145 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal D3U04_RS15145 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal D3U04_RS15150 PF05721 Phytanoyl-CoA dioxygenase (PhyH) D3U04_RS15155 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS15155 PF00501 AMP-binding enzyme D3U04_RS15155 PF00668 Condensation domain D3U04_RS15155 PF00550 Phosphopantetheine attachment site D3U04_RS15170 PF01757 Acyltransferase family D3U04_RS15175 PF01565 FAD binding domain D3U04_RS15175 PF08031 Berberine and berberine like D3U04_RS15180 PF08031 Berberine and berberine like D3U04_RS15180 PF01565 FAD binding domain D3U04_RS15185 PF07690 Major Facilitator Superfamily D3U04_RS15195 PF01370 NAD dependent epimerase/dehydratase family D3U04_RS15200 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3U04_RS15200 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3U04_RS15200 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3U04_RS15205 PF03559 NDP-hexose 2,3-dehydratase D3U04_RS15210 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3U04_RS15215 PF13649 Methyltransferase domain D3U04_RS15220 PF08484 C-methyltransferase C-terminal domain D3U04_RS15220 PF08421 Putative zinc binding domain D3U04_RS15230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3U04_RS15235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3U04_RS15250 PF01757 Acyltransferase family D3U04_RS15260 PF06722 Protein of unknown function (DUF1205) D3U04_RS15265 PF00483 Nucleotidyl transferase D3U04_RS15270 PF04542 Sigma-70 region 2 D3U04_RS15270 PF08281 Sigma-70, region 4 D3U04_RS15285 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS15290 PF04542 Sigma-70 region 2 D3U04_RS15290 PF08281 Sigma-70, region 4 D3U04_RS15290 PF12680 SnoaL-like domain D3U04_RS15315 PF00072 Response regulator receiver domain D3U04_RS15325 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3U04_RS15325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3U04_RS15330 PF03447 Homoserine dehydrogenase, NAD binding domain D3U04_RS15330 PF01842 ACT domain D3U04_RS15330 PF00742 Homoserine dehydrogenase D3U04_RS15335 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS15340 PF08544 GHMP kinases C terminal D3U04_RS15340 PF00288 GHMP kinases N terminal domain D3U04_RS15345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3U04_RS15345 PF07498 Rho termination factor, N-terminal domain D3U04_RS15345 PF07497 Rho termination factor, RNA-binding domain D3U04_RS15345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3U04_RS15345 PF07498 Rho termination factor, N-terminal domain D3U04_RS15345 PF07497 Rho termination factor, RNA-binding domain D3U04_RS15355 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS15355 PF00072 Response regulator receiver domain D3U04_RS15360 PF01197 Ribosomal protein L31 D3U04_RS15365 PF00472 RF-1 domain D3U04_RS15365 PF03462 PCRF domain D3U04_RS15370 PF13649 Methyltransferase domain D3U04_RS15370 PF17827 PrmC N-terminal domain D3U04_RS15375 PF01300 Telomere recombination D3U04_RS15385 PF00953 Glycosyl transferase family 4 D3U04_RS15400 PF00119 ATP synthase A chain D3U04_RS15405 PF00137 ATP synthase subunit C D3U04_RS15410 PF00430 ATP synthase B/B' CF(0) D3U04_RS15415 PF00213 ATP synthase delta (OSCP) subunit D3U04_RS15420 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3U04_RS15420 PF00306 ATP synthase alpha/beta chain, C terminal domain D3U04_RS15420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3U04_RS15425 PF00231 ATP synthase D3U04_RS15430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D3U04_RS15430 PF02874 ATP synthase alpha/beta family, beta-barrel domain D3U04_RS15435 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D3U04_RS15450 PF01923 Cobalamin adenosyltransferase D3U04_RS15455 PF00732 GMC oxidoreductase D3U04_RS15455 PF05199 GMC oxidoreductase D3U04_RS15460 PF00171 Aldehyde dehydrogenase family D3U04_RS15465 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS15465 PF00072 Response regulator receiver domain D3U04_RS15480 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS15490 PF12833 Helix-turn-helix domain D3U04_RS15490 PF14525 AraC-binding-like domain D3U04_RS15505 PF01939 Endonuclease NucS D3U04_RS15520 PF00583 Acetyltransferase (GNAT) family D3U04_RS15530 PF00296 Luciferase-like monooxygenase D3U04_RS15535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3U04_RS15535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3U04_RS15560 PF01594 AI-2E family transporter D3U04_RS15570 PF00223 Photosystem I psaA/psaB protein D3U04_RS15570 PF00691 OmpA family D3U04_RS15585 PF00108 Thiolase, N-terminal domain D3U04_RS15585 PF02803 Thiolase, C-terminal domain D3U04_RS15600 PF12823 Domain of unknown function (DUF3817) D3U04_RS15610 PF00005 ABC transporter D3U04_RS15615 PF00085 Thioredoxin D3U04_RS15620 PF01202 Shikimate kinase D3U04_RS15625 PF00390 Malic enzyme, N-terminal domain D3U04_RS15625 PF03949 Malic enzyme, NAD binding domain D3U04_RS15640 PF02622 Uncharacterized ACR, COG1678 D3U04_RS15655 PF04851 Type III restriction enzyme, res subunit D3U04_RS15660 PF01202 Shikimate kinase D3U04_RS15665 PF00857 Isochorismatase family D3U04_RS15670 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D3U04_RS15670 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D3U04_RS15675 PF02617 ATP-dependent Clp protease adaptor protein ClpS D3U04_RS15680 PF09438 Domain of unknown function (DUF2017) D3U04_RS15685 PF14464 Prokaryotic homologs of the JAB domain D3U04_RS15690 PF02597 ThiS family D3U04_RS15695 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS15715 PF01177 Asp/Glu/Hydantoin racemase D3U04_RS15720 PF12706 Beta-lactamase superfamily domain D3U04_RS15725 PF01138 3' exoribonuclease family, domain 1 D3U04_RS15725 PF03725 3' exoribonuclease family, domain 2 D3U04_RS15730 PF01725 Ham1 family D3U04_RS15735 PF00542 Ribosomal protein L7/L12 C-terminal domain D3U04_RS15735 PF16320 Ribosomal protein L7/L12 dimerisation domain D3U04_RS15765 PF00578 AhpC/TSA family D3U04_RS15775 PF02056 Family 4 glycosyl hydrolase D3U04_RS15775 PF11975 Family 4 glycosyl hydrolase C-terminal domain D3U04_RS15780 PF00294 pfkB family carbohydrate kinase D3U04_RS15800 PF00551 Formyl transferase D3U04_RS15810 PF03780 Asp23 family, cell envelope-related function D3U04_RS15845 PF02578 Multi-copper polyphenol oxidoreductase laccase D3U04_RS15855 PF03313 Serine dehydratase alpha chain D3U04_RS15855 PF03315 Serine dehydratase beta chain D3U04_RS15860 PF00464 Serine hydroxymethyltransferase D3U04_RS15865 PF01597 Glycine cleavage H-protein D3U04_RS15870 PF08669 Glycine cleavage T-protein C-terminal barrel domain D3U04_RS15870 PF01571 Aminomethyltransferase folate-binding domain D3U04_RS15880 PF07729 FCD domain D3U04_RS15880 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS15885 PF17820 PDZ domain D3U04_RS15885 PF02163 Peptidase family M50 D3U04_RS15895 PF04679 ATP dependent DNA ligase C terminal region D3U04_RS15895 PF01068 ATP dependent DNA ligase domain D3U04_RS15895 PF04675 DNA ligase N terminus D3U04_RS15915 PF00561 alpha/beta hydrolase fold D3U04_RS15915 PF00106 short chain dehydrogenase D3U04_RS15920 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS15925 PF00743 Flavin-binding monooxygenase-like D3U04_RS15930 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS15930 PF08359 YsiA-like protein, C-terminal region D3U04_RS15940 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS15955 PF02405 Permease MlaE D3U04_RS15960 PF02405 Permease MlaE D3U04_RS16000 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) D3U04_RS16005 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS16010 PF00163 Ribosomal protein S4/S9 N-terminal domain D3U04_RS16010 PF01479 S4 domain D3U04_RS16020 PF01053 Cys/Met metabolism PLP-dependent enzyme D3U04_RS16030 PF03167 Uracil DNA glycosylase superfamily D3U04_RS16035 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain D3U04_RS16035 PF06974 Protein of unknown function (DUF1298) D3U04_RS16050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3U04_RS16050 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS16075 PF03259 Roadblock/LC7 domain D3U04_RS16095 PF00067 Cytochrome P450 D3U04_RS16105 PF02342 TerD domain D3U04_RS16115 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D3U04_RS16115 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D3U04_RS16120 PF16859 Tetracyclin repressor-like, C-terminal domain D3U04_RS16120 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS16130 PF01872 RibD C-terminal domain D3U04_RS16135 PF00296 Luciferase-like monooxygenase D3U04_RS16175 PF13411 MerR HTH family regulatory protein D3U04_RS16180 PF07690 Major Facilitator Superfamily D3U04_RS16185 PF12680 SnoaL-like domain D3U04_RS16185 PF04542 Sigma-70 region 2 D3U04_RS16185 PF08281 Sigma-70, region 4 D3U04_RS16200 PF12800 4Fe-4S binding domain D3U04_RS16200 PF13247 4Fe-4S dicluster domain D3U04_RS16200 PF09163 Formate dehydrogenase N, transmembrane D3U04_RS16205 PF01568 Molydopterin dinucleotide binding domain D3U04_RS16205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3U04_RS16205 PF00384 Molybdopterin oxidoreductase D3U04_RS16210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3U04_RS16210 PF00384 Molybdopterin oxidoreductase D3U04_RS16210 PF01568 Molydopterin dinucleotide binding domain D3U04_RS16215 PF00571 CBS domain D3U04_RS16220 PF04073 Aminoacyl-tRNA editing domain D3U04_RS16220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3U04_RS16220 PF03129 Anticodon binding domain D3U04_RS16230 PF03176 MMPL family D3U04_RS16250 PF00072 Response regulator receiver domain D3U04_RS16250 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS16255 PF00581 Rhodanese-like domain D3U04_RS16255 PF00899 ThiF family D3U04_RS16265 PF05532 CsbD-like D3U04_RS16275 PF00082 Subtilase family D3U04_RS16290 PF00580 UvrD/REP helicase N-terminal domain D3U04_RS16290 PF13361 UvrD-like helicase C-terminal domain D3U04_RS16295 PF00580 UvrD/REP helicase N-terminal domain D3U04_RS16295 PF13361 UvrD-like helicase C-terminal domain D3U04_RS16305 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS16320 PF06276 Ferric iron reductase FhuF-like transporter D3U04_RS16320 PF04183 IucA / IucC family D3U04_RS16325 PF02142 MGS-like domain D3U04_RS16325 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D3U04_RS16325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3U04_RS16345 PF00293 NUDIX domain D3U04_RS16345 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain D3U04_RS16345 PF09297 NADH pyrophosphatase zinc ribbon domain D3U04_RS16350 PF00462 Glutaredoxin D3U04_RS16355 PF13361 UvrD-like helicase C-terminal domain D3U04_RS16355 PF00580 UvrD/REP helicase N-terminal domain D3U04_RS16355 PF00570 HRDC domain D3U04_RS16370 PF02467 Transcription factor WhiB D3U04_RS16375 PF03109 ABC1 family D3U04_RS16410 PF01370 NAD dependent epimerase/dehydratase family D3U04_RS16415 PF03699 Uncharacterised protein family (UPF0182) D3U04_RS16425 PF02391 MoaE protein D3U04_RS16430 PF05362 Lon protease (S16) C-terminal proteolytic domain D3U04_RS16430 PF13180 PDZ domain D3U04_RS16455 PF00501 AMP-binding enzyme D3U04_RS16460 PF00067 Cytochrome P450 D3U04_RS16470 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS16475 PF01266 FAD dependent oxidoreductase D3U04_RS16485 PF00459 Inositol monophosphatase family D3U04_RS16490 PF02803 Thiolase, C-terminal domain D3U04_RS16490 PF00108 Thiolase, N-terminal domain D3U04_RS16495 PF01638 HxlR-like helix-turn-helix D3U04_RS16505 PF00351 Biopterin-dependent aromatic amino acid hydroxylase D3U04_RS16510 PF01565 FAD binding domain D3U04_RS16510 PF08031 Berberine and berberine like D3U04_RS16515 PF00069 Protein kinase domain D3U04_RS16515 PF03793 PASTA domain D3U04_RS16525 PF00106 short chain dehydrogenase D3U04_RS16530 PF03193 RsgA GTPase D3U04_RS16535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D3U04_RS16550 PF02586 SOS response associated peptidase (SRAP) D3U04_RS16565 PF08281 Sigma-70, region 4 D3U04_RS16565 PF04542 Sigma-70 region 2 D3U04_RS16570 PF13490 Putative zinc-finger D3U04_RS16575 PF16363 GDP-mannose 4,6 dehydratase D3U04_RS16580 PF01966 HD domain D3U04_RS16590 PF02785 Biotin carboxylase C-terminal domain D3U04_RS16590 PF00289 Biotin carboxylase, N-terminal domain D3U04_RS16590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3U04_RS16595 PF00364 Biotin-requiring enzyme D3U04_RS16615 PF06968 Biotin and Thiamin Synthesis associated domain D3U04_RS16615 PF04055 Radical SAM superfamily D3U04_RS16620 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS16620 PF07702 UTRA domain D3U04_RS16625 PF00155 Aminotransferase class I and II D3U04_RS16630 PF07568 Histidine kinase D3U04_RS16630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS16630 PF12282 Signal transduction histidine kinase D3U04_RS16635 PF02467 Transcription factor WhiB D3U04_RS16640 PF00781 Diacylglycerol kinase catalytic domain D3U04_RS16650 PF04545 Sigma-70, region 4 D3U04_RS16650 PF04542 Sigma-70 region 2 D3U04_RS16650 PF04539 Sigma-70 region 3 D3U04_RS16655 PF13581 Histidine kinase-like ATPase domain D3U04_RS16665 PF09055 Nickel-containing superoxide dismutase D3U04_RS16680 PF03949 Malic enzyme, NAD binding domain D3U04_RS16680 PF00390 Malic enzyme, N-terminal domain D3U04_RS16685 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3U04_RS16690 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS16695 PF00005 ABC transporter D3U04_RS16705 PF03551 Transcriptional regulator PadR-like family D3U04_RS16720 PF16078 2-oxoglutarate dehydrogenase N-terminus D3U04_RS16720 PF00676 Dehydrogenase E1 component D3U04_RS16720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3U04_RS16720 PF16870 2-oxoglutarate dehydrogenase C-terminal D3U04_RS16720 PF02779 Transketolase, pyrimidine binding domain D3U04_RS16730 PF13409 Glutathione S-transferase, N-terminal domain D3U04_RS16735 PF01113 Dihydrodipicolinate reductase, N-terminus D3U04_RS16740 PF00106 short chain dehydrogenase D3U04_RS16745 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS16750 PF00480 ROK family D3U04_RS16755 PF00005 ABC transporter D3U04_RS16760 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS16770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3U04_RS16770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3U04_RS16815 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS16830 PF00107 Zinc-binding dehydrogenase D3U04_RS16830 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS16850 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS16855 PF13439 Glycosyltransferase Family 4 D3U04_RS16855 PF00534 Glycosyl transferases group 1 D3U04_RS16860 PF00067 Cytochrome P450 D3U04_RS16865 PF00067 Cytochrome P450 D3U04_RS16875 PF00108 Thiolase, N-terminal domain D3U04_RS16875 PF02803 Thiolase, C-terminal domain D3U04_RS16880 PF00107 Zinc-binding dehydrogenase D3U04_RS16880 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS16885 PF00067 Cytochrome P450 D3U04_RS16890 PF01501 Glycosyl transferase family 8 D3U04_RS16890 PF00535 Glycosyl transferase family 2 D3U04_RS16895 PF00067 Cytochrome P450 D3U04_RS16900 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family D3U04_RS16915 PF00941 FAD binding domain in molybdopterin dehydrogenase D3U04_RS16915 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3U04_RS16920 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS16920 PF01799 [2Fe-2S] binding domain D3U04_RS16925 PF01979 Amidohydrolase family D3U04_RS16935 PF07282 Putative transposase DNA-binding domain D3U04_RS16935 PF01385 Probable transposase D3U04_RS16935 PF12323 Helix-turn-helix domain D3U04_RS16940 PF00106 short chain dehydrogenase D3U04_RS16945 PF03561 Allantoicase repeat D3U04_RS16955 PF17925 Tetracyclin repressor-like, C-terminal domain D3U04_RS16955 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS16960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS16960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS16965 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS16965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS16965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS16975 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3U04_RS16980 PF03781 Sulfatase-modifying factor enzyme 1 D3U04_RS16980 PF12867 DinB superfamily D3U04_RS16990 PF10017 Histidine-specific methyltransferase, SAM-dependent D3U04_RS16995 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS17000 PF00571 CBS domain D3U04_RS17000 PF00005 ABC transporter D3U04_RS17005 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS17010 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS17020 PF01614 Bacterial transcriptional regulator D3U04_RS17020 PF09339 IclR helix-turn-helix domain D3U04_RS17025 PF00221 Aromatic amino acid lyase D3U04_RS17030 PF17391 Urocanase N-terminal domain D3U04_RS17030 PF17392 Urocanase C-terminal domain D3U04_RS17030 PF01175 Urocanase Rossmann-like domain D3U04_RS17035 PF01546 Peptidase family M20/M25/M40 D3U04_RS17040 PF01979 Amidohydrolase family D3U04_RS17045 PF01979 Amidohydrolase family D3U04_RS17055 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS17065 PF00664 ABC transporter transmembrane region D3U04_RS17065 PF00005 ABC transporter D3U04_RS17080 PF01613 Flavin reductase like domain D3U04_RS17085 PF01343 Peptidase family S49 D3U04_RS17095 PF00069 Protein kinase domain D3U04_RS17095 PF00400 WD domain, G-beta repeat D3U04_RS17105 PF00128 Alpha amylase, catalytic domain D3U04_RS17105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3U04_RS17105 PF02806 Alpha amylase, C-terminal all-beta domain D3U04_RS17120 PF00067 Cytochrome P450 D3U04_RS17130 PF07729 FCD domain D3U04_RS17130 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS17135 PF01435 Peptidase family M48 D3U04_RS17165 PF00535 Glycosyl transferase family 2 D3U04_RS17180 PF18085 Maltokinase N-terminal cap domain D3U04_RS17190 PF11896 Domain of unknown function (DUF3416) D3U04_RS17195 PF00343 Carbohydrate phosphorylase D3U04_RS17195 PF11897 Protein of unknown function (DUF3417) D3U04_RS17200 PF04434 SWIM zinc finger D3U04_RS17205 PF12419 SNF2 Helicase protein D3U04_RS17205 PF00271 Helicase conserved C-terminal domain D3U04_RS17205 PF00176 SNF2 family N-terminal domain D3U04_RS17210 PF00106 short chain dehydrogenase D3U04_RS17215 PF03405 Fatty acid desaturase D3U04_RS17220 PF13360 PQQ-like domain D3U04_RS17220 PF00069 Protein kinase domain D3U04_RS17225 PF13191 AAA ATPase domain D3U04_RS17225 PF00069 Protein kinase domain D3U04_RS17230 PF01012 Electron transfer flavoprotein domain D3U04_RS17235 PF00766 Electron transfer flavoprotein FAD-binding domain D3U04_RS17235 PF01012 Electron transfer flavoprotein domain D3U04_RS17240 PF07726 ATPase family associated with various cellular activities (AAA) D3U04_RS17240 PF17863 AAA lid domain D3U04_RS17250 PF01841 Transglutaminase-like superfamily D3U04_RS17250 PF11992 Domain of unknown function (DUF3488) D3U04_RS17250 PF13559 Domain of unknown function (DUF4129) D3U04_RS17260 PF07690 Major Facilitator Superfamily D3U04_RS17270 PF00266 Aminotransferase class-V D3U04_RS17290 PF00296 Luciferase-like monooxygenase D3U04_RS17305 PF03120 NAD-dependent DNA ligase OB-fold domain D3U04_RS17305 PF12826 Helix-hairpin-helix motif D3U04_RS17305 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D3U04_RS17305 PF00533 BRCA1 C Terminus (BRCT) domain D3U04_RS17305 PF01653 NAD-dependent DNA ligase adenylation domain D3U04_RS17310 PF03707 Bacterial signalling protein N terminal repeat D3U04_RS17310 PF00990 Diguanylate cyclase, GGDEF domain D3U04_RS17310 PF00563 EAL domain D3U04_RS17325 PF02686 Glu-tRNAGln amidotransferase C subunit D3U04_RS17330 PF01425 Amidase D3U04_RS17335 PF02637 GatB domain D3U04_RS17335 PF02934 GatB/GatE catalytic domain D3U04_RS17340 PF07995 Glucose / Sorbosone dehydrogenase D3U04_RS17345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3U04_RS17345 PF01842 ACT domain D3U04_RS17345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3U04_RS17350 PF08447 PAS fold D3U04_RS17350 PF08448 PAS fold D3U04_RS17350 PF00990 Diguanylate cyclase, GGDEF domain D3U04_RS17350 PF00563 EAL domain D3U04_RS17355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3U04_RS17355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3U04_RS17355 PF00205 Thiamine pyrophosphate enzyme, central domain D3U04_RS17360 PF01842 ACT domain D3U04_RS17360 PF10369 Small subunit of acetolactate synthase D3U04_RS17365 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D3U04_RS17365 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D3U04_RS17375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D3U04_RS17375 PF01842 ACT domain D3U04_RS17375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D3U04_RS17380 PF00180 Isocitrate/isopropylmalate dehydrogenase D3U04_RS17385 PF01063 Amino-transferase class IV D3U04_RS17390 PF00682 HMGL-like D3U04_RS17390 PF08502 LeuA allosteric (dimerisation) domain D3U04_RS17410 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3U04_RS17435 PF02589 LUD domain D3U04_RS17440 PF11870 Domain of unknown function (DUF3390) D3U04_RS17440 PF02589 LUD domain D3U04_RS17440 PF13183 4Fe-4S dicluster domain D3U04_RS17445 PF02754 Cysteine-rich domain D3U04_RS17450 PF02652 L-lactate permease D3U04_RS17455 PF07729 FCD domain D3U04_RS17455 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS17460 PF01144 Coenzyme A transferase D3U04_RS17465 PF01144 Coenzyme A transferase D3U04_RS17470 PF00775 Dioxygenase D3U04_RS17470 PF04444 Catechol dioxygenase N terminus D3U04_RS17480 PF01613 Flavin reductase like domain D3U04_RS17485 PF12697 Alpha/beta hydrolase family D3U04_RS17490 PF00890 FAD binding domain D3U04_RS17495 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS17495 PF00175 Oxidoreductase NAD-binding domain D3U04_RS17495 PF00970 Oxidoreductase FAD-binding domain D3U04_RS17500 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS17510 PF00069 Protein kinase domain D3U04_RS17510 PF00400 WD domain, G-beta repeat D3U04_RS17520 PF05368 NmrA-like family D3U04_RS17555 PF01258 Prokaryotic dksA/traR C4-type zinc finger D3U04_RS17560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS17560 PF05231 MASE1 D3U04_RS17560 PF07730 Histidine kinase D3U04_RS17565 PF00072 Response regulator receiver domain D3U04_RS17565 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS17575 PF05050 Methyltransferase FkbM domain D3U04_RS17585 PF13439 Glycosyltransferase Family 4 D3U04_RS17590 PF04542 Sigma-70 region 2 D3U04_RS17590 PF08281 Sigma-70, region 4 D3U04_RS17590 PF12680 SnoaL-like domain D3U04_RS17600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3U04_RS17605 PF14537 Cytochrome c3 D3U04_RS17605 PF00890 FAD binding domain D3U04_RS17615 PF00355 Rieske [2Fe-2S] domain D3U04_RS17620 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS17620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS17630 PF00118 TCP-1/cpn60 chaperonin family D3U04_RS17635 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS17635 PF17925 Tetracyclin repressor-like, C-terminal domain D3U04_RS17650 PF00005 ABC transporter D3U04_RS17660 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS17660 PF00501 AMP-binding enzyme D3U04_RS17670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3U04_RS17675 PF00501 AMP-binding enzyme D3U04_RS17675 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS17680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS17680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS17680 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS17690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS17690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS17710 PF00108 Thiolase, N-terminal domain D3U04_RS17710 PF02803 Thiolase, C-terminal domain D3U04_RS17715 PF00106 short chain dehydrogenase D3U04_RS17720 PF01557 Fumarylacetoacetate (FAA) hydrolase family D3U04_RS17725 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3U04_RS17725 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation D3U04_RS17730 PF00682 HMGL-like D3U04_RS17730 PF07836 DmpG-like communication domain D3U04_RS17735 PF08278 DNA primase DnaG DnaB-binding D3U04_RS17735 PF10410 DnaB-helicase binding domain of primase D3U04_RS17735 PF13662 Toprim domain D3U04_RS17735 PF08275 DNA primase catalytic core, N-terminal domain D3U04_RS17735 PF01807 CHC2 zinc finger D3U04_RS17770 PF09339 IclR helix-turn-helix domain D3U04_RS17770 PF01614 Bacterial transcriptional regulator D3U04_RS17775 PF00330 Aconitase family (aconitate hydratase) D3U04_RS17780 PF00694 Aconitase C-terminal domain D3U04_RS17790 PF00216 Bacterial DNA-binding protein D3U04_RS17800 PF01983 Guanylyl transferase CofC like D3U04_RS17810 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D3U04_RS17810 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D3U04_RS17815 PF01820 D-ala D-ala ligase N-terminus D3U04_RS17815 PF07478 D-ala D-ala ligase C-terminus D3U04_RS17820 PF03069 Acetamidase/Formamidase family D3U04_RS17850 PF04055 Radical SAM superfamily D3U04_RS17850 PF13186 Iron-sulfur cluster-binding domain D3U04_RS17855 PF03781 Sulfatase-modifying factor enzyme 1 D3U04_RS17860 PF02687 FtsX-like permease family D3U04_RS17860 PF12704 MacB-like periplasmic core domain D3U04_RS17865 PF12704 MacB-like periplasmic core domain D3U04_RS17865 PF02687 FtsX-like permease family D3U04_RS17865 PF00005 ABC transporter D3U04_RS17895 PF10431 C-terminal, D2-small domain, of ClpB protein D3U04_RS17895 PF02861 Clp amino terminal domain, pathogenicity island component D3U04_RS17895 PF17871 AAA lid domain D3U04_RS17895 PF07724 AAA domain (Cdc48 subfamily) D3U04_RS17895 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS17900 PF02082 Transcriptional regulator D3U04_RS17905 PF00970 Oxidoreductase FAD-binding domain D3U04_RS17905 PF00175 Oxidoreductase NAD-binding domain D3U04_RS17905 PF00042 Globin D3U04_RS17925 PF00586 AIR synthase related protein, N-terminal domain D3U04_RS17925 PF02769 AIR synthase related protein, C-terminal domain D3U04_RS17935 PF08543 Phosphomethylpyrimidine kinase D3U04_RS17950 PF00830 Ribosomal L28 family D3U04_RS17955 PF00271 Helicase conserved C-terminal domain D3U04_RS17955 PF00270 DEAD/DEAH box helicase D3U04_RS17955 PF17191 RecG wedge domain D3U04_RS17965 PF01467 Cytidylyltransferase-like D3U04_RS17970 PF02620 Large ribosomal RNA subunit accumulation protein YceD D3U04_RS17975 PF01783 Ribosomal L32p protein family D3U04_RS17980 PF00035 Double-stranded RNA binding motif D3U04_RS17980 PF14622 Ribonuclease-III-like D3U04_RS17985 PF06827 Zinc finger found in FPG and IleRS D3U04_RS17985 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D3U04_RS17985 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D3U04_RS17990 PF00708 Acylphosphatase D3U04_RS18000 PF02463 RecF/RecN/SMC N terminal domain D3U04_RS18000 PF06470 SMC proteins Flexible Hinge Domain D3U04_RS18010 PF00448 SRP54-type protein, GTPase domain D3U04_RS18010 PF02881 SRP54-type protein, helical bundle domain D3U04_RS18015 PF00909 Ammonium Transporter Family D3U04_RS18020 PF00543 Nitrogen regulatory protein P-II D3U04_RS18025 PF08335 GlnD PII-uridylyltransferase D3U04_RS18025 PF01909 Nucleotidyltransferase domain D3U04_RS18025 PF01966 HD domain D3U04_RS18030 PF02881 SRP54-type protein, helical bundle domain D3U04_RS18030 PF02978 Signal peptide binding domain D3U04_RS18030 PF00448 SRP54-type protein, GTPase domain D3U04_RS18035 PF00886 Ribosomal protein S16 D3U04_RS18045 PF05239 PRC-barrel domain D3U04_RS18045 PF01782 RimM N-terminal domain D3U04_RS18060 PF01245 Ribosomal protein L19 D3U04_RS18065 PF10502 Signal peptidase, peptidase S26 D3U04_RS18070 PF01351 Ribonuclease HII D3U04_RS18075 PF10611 Protein of unknown function (DUF2469) D3U04_RS18080 PF17782 DprA winged helix domain D3U04_RS18080 PF02481 DNA recombination-mediator protein A D3U04_RS18085 PF01078 Magnesium chelatase, subunit ChlI D3U04_RS18085 PF13335 Magnesium chelatase, subunit ChlI C-terminal D3U04_RS18090 PF02021 Uncharacterised protein family UPF0102 D3U04_RS18105 PF00318 Ribosomal protein S2 D3U04_RS18110 PF00889 Elongation factor TS D3U04_RS18115 PF00696 Amino acid kinase family D3U04_RS18120 PF01765 Ribosome recycling factor D3U04_RS18135 PF04055 Radical SAM superfamily D3U04_RS18155 PF00005 ABC transporter D3U04_RS18175 PF00171 Aldehyde dehydrogenase family D3U04_RS18180 PF00005 ABC transporter D3U04_RS18180 PF08402 TOBE domain D3U04_RS18190 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18195 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18200 PF01266 FAD dependent oxidoreductase D3U04_RS18220 PF13360 PQQ-like domain D3U04_RS18220 PF00069 Protein kinase domain D3U04_RS18225 PF00999 Sodium/hydrogen exchanger family D3U04_RS18230 PF00498 FHA domain D3U04_RS18270 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3U04_RS18285 PF01329 Pterin 4 alpha carbinolamine dehydratase D3U04_RS18290 PF00202 Aminotransferase class-III D3U04_RS18295 PF00171 Aldehyde dehydrogenase family D3U04_RS18305 PF13416 Bacterial extracellular solute-binding protein D3U04_RS18325 PF13288 DXP reductoisomerase C-terminal domain D3U04_RS18325 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D3U04_RS18325 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D3U04_RS18330 PF02163 Peptidase family M50 D3U04_RS18330 PF17820 PDZ domain D3U04_RS18335 PF04551 GcpE protein D3U04_RS18340 PF00561 alpha/beta hydrolase fold D3U04_RS18345 PF00561 alpha/beta hydrolase fold D3U04_RS18365 PF04199 Putative cyclase D3U04_RS18375 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS18375 PF00072 Response regulator receiver domain D3U04_RS18380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS18380 PF00672 HAMP domain D3U04_RS18380 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS18405 PF01425 Amidase D3U04_RS18410 PF01810 LysE type translocator D3U04_RS18420 PF04493 Endonuclease V D3U04_RS18440 PF17932 Tetracyclin repressor-like, C-terminal domain D3U04_RS18440 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS18450 PF00464 Serine hydroxymethyltransferase D3U04_RS18470 PF00355 Rieske [2Fe-2S] domain D3U04_RS18475 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS18475 PF00970 Oxidoreductase FAD-binding domain D3U04_RS18485 PF02627 Carboxymuconolactone decarboxylase family D3U04_RS18490 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal D3U04_RS18490 PF00775 Dioxygenase D3U04_RS18495 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal D3U04_RS18495 PF00775 Dioxygenase D3U04_RS18500 PF09339 IclR helix-turn-helix domain D3U04_RS18500 PF01614 Bacterial transcriptional regulator D3U04_RS18510 PF13458 Periplasmic binding protein D3U04_RS18515 PF00005 ABC transporter D3U04_RS18520 PF00005 ABC transporter D3U04_RS18540 PF00106 short chain dehydrogenase D3U04_RS18550 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS18550 PF00501 AMP-binding enzyme D3U04_RS18555 PF01575 MaoC like domain D3U04_RS18570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS18570 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS18570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS18610 PF17384 RimP C-terminal SH3 domain D3U04_RS18610 PF02576 RimP N-terminal domain D3U04_RS18615 PF13184 NusA-like KH domain D3U04_RS18615 PF08529 NusA N-terminal domain D3U04_RS18625 PF11987 Translation-initiation factor 2 D3U04_RS18625 PF04760 Translation initiation factor IF-2, N-terminal region D3U04_RS18625 PF00009 Elongation factor Tu GTP binding domain D3U04_RS18635 PF02033 Ribosome-binding factor A D3U04_RS18640 PF02272 DHHA1 domain D3U04_RS18640 PF01368 DHH family D3U04_RS18645 PF09142 tRNA Pseudouridine synthase II, C terminal D3U04_RS18645 PF01509 TruB family pseudouridylate synthase (N terminal domain) D3U04_RS18645 PF16198 tRNA pseudouridylate synthase B C-terminal domain D3U04_RS18650 PF06574 FAD synthetase D3U04_RS18650 PF01687 Riboflavin kinase D3U04_RS18655 PF00312 Ribosomal protein S15 D3U04_RS18660 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D3U04_RS18660 PF01138 3' exoribonuclease family, domain 1 D3U04_RS18660 PF00575 S1 RNA binding domain D3U04_RS18660 PF00013 KH domain D3U04_RS18660 PF03725 3' exoribonuclease family, domain 2 D3U04_RS18665 PF00675 Insulinase (Peptidase family M16) D3U04_RS18665 PF05193 Peptidase M16 inactive domain D3U04_RS18670 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV D3U04_RS18675 PF05173 Dihydrodipicolinate reductase, C-terminus D3U04_RS18675 PF01113 Dihydrodipicolinate reductase, N-terminus D3U04_RS18695 PF03167 Uracil DNA glycosylase superfamily D3U04_RS18705 PF01040 UbiA prenyltransferase family D3U04_RS18710 PF07690 Major Facilitator Superfamily D3U04_RS18730 PF00155 Aminotransferase class I and II D3U04_RS18730 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS18750 PF00701 Dihydrodipicolinate synthetase family D3U04_RS18755 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D3U04_RS18755 PF12706 Beta-lactamase superfamily domain D3U04_RS18755 PF17770 Ribonuclease J C-terminal domain D3U04_RS18760 PF17854 FtsK alpha domain D3U04_RS18760 PF09397 Ftsk gamma domain D3U04_RS18760 PF01580 FtsK/SpoIIIE family D3U04_RS18770 PF18693 TRAM domain D3U04_RS18770 PF04055 Radical SAM superfamily D3U04_RS18770 PF00919 Uncharacterized protein family UPF0004 D3U04_RS18775 PF01066 CDP-alcohol phosphatidyltransferase D3U04_RS18780 PF02464 Competence-damaged protein D3U04_RS18780 PF18146 Damage-inducible protein CinA KH domain D3U04_RS18780 PF00994 Probable molybdopterin binding domain D3U04_RS18790 PF00210 Ferritin-like domain D3U04_RS18795 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D3U04_RS18795 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D3U04_RS18800 PF02082 Transcriptional regulator D3U04_RS18805 PF00933 Glycosyl hydrolase family 3 N terminal domain D3U04_RS18810 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18815 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18825 PF00480 ROK family D3U04_RS18830 PF08494 DEAD/H associated D3U04_RS18830 PF00271 Helicase conserved C-terminal domain D3U04_RS18830 PF00270 DEAD/DEAH box helicase D3U04_RS18845 PF00154 recA bacterial DNA recombination protein D3U04_RS18850 PF02631 RecX family D3U04_RS18855 PF00013 KH domain D3U04_RS18855 PF12072 Domain of unknown function (DUF3552) D3U04_RS18855 PF01966 HD domain D3U04_RS18865 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18870 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18875 PF00497 Bacterial extracellular solute-binding proteins, family 3 D3U04_RS18880 PF00005 ABC transporter D3U04_RS18885 PF04055 Radical SAM superfamily D3U04_RS18885 PF00919 Uncharacterized protein family UPF0004 D3U04_RS18905 PF01678 Diaminopimelate epimerase D3U04_RS18910 PF05384 Sensor protein DegS D3U04_RS18910 PF07730 Histidine kinase D3U04_RS18910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS18920 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS18920 PF16295 Tetracyclin repressor-like, C-terminal domain D3U04_RS18930 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18935 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS18935 PF12911 N-terminal TM domain of oligopeptide transport permease C D3U04_RS18940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3U04_RS18940 PF00005 ABC transporter D3U04_RS18945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3U04_RS18955 PF02754 Cysteine-rich domain D3U04_RS18955 PF13183 4Fe-4S dicluster domain D3U04_RS18960 PF01565 FAD binding domain D3U04_RS18960 PF02913 FAD linked oxidases, C-terminal domain D3U04_RS18965 PF02913 FAD linked oxidases, C-terminal domain D3U04_RS18965 PF01565 FAD binding domain D3U04_RS18970 PF01274 Malate synthase D3U04_RS18975 PF16360 GTP-binding GTPase Middle Region D3U04_RS18975 PF13167 GTP-binding GTPase N-terminal D3U04_RS18975 PF01926 50S ribosome-binding GTPase D3U04_RS18980 PF01979 Amidohydrolase family D3U04_RS18985 PF02645 Uncharacterised protein, DegV family COG1307 D3U04_RS19010 PF01649 Ribosomal protein S20 D3U04_RS19015 PF06421 GTP-binding protein LepA C-terminus D3U04_RS19015 PF00009 Elongation factor Tu GTP binding domain D3U04_RS19015 PF00679 Elongation factor G C-terminus D3U04_RS19045 PF04055 Radical SAM superfamily D3U04_RS19055 PF01628 HrcA protein C terminal domain D3U04_RS19055 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding D3U04_RS19060 PF00226 DnaJ domain D3U04_RS19060 PF01556 DnaJ C terminal domain D3U04_RS19060 PF00684 DnaJ central domain D3U04_RS19065 PF04452 RNA methyltransferase D3U04_RS19080 PF01230 HIT domain D3U04_RS19085 PF02562 PhoH-like protein D3U04_RS19090 PF02130 Uncharacterized protein family UPF0054 D3U04_RS19095 PF01595 Cyclin M transmembrane N-terminal domain D3U04_RS19095 PF00571 CBS domain D3U04_RS19095 PF03471 Transporter associated domain D3U04_RS19105 PF07650 KH domain D3U04_RS19105 PF01926 50S ribosome-binding GTPase D3U04_RS19120 PF08502 LeuA allosteric (dimerisation) domain D3U04_RS19120 PF00682 HMGL-like D3U04_RS19145 PF00067 Cytochrome P450 D3U04_RS19155 PF01447 Thermolysin metallopeptidase, catalytic domain D3U04_RS19155 PF02868 Thermolysin metallopeptidase, alpha-helical domain D3U04_RS19155 PF16485 Protealysin propeptide D3U04_RS19160 PF02565 Recombination protein O C terminal D3U04_RS19160 PF11967 Recombination protein O N terminal D3U04_RS19165 PF01255 Putative undecaprenyl diphosphate synthase D3U04_RS19170 PF01475 Ferric uptake regulator family D3U04_RS19175 PF00950 ABC 3 transport family D3U04_RS19180 PF00005 ABC transporter D3U04_RS19185 PF01297 Zinc-uptake complex component A periplasmic D3U04_RS19185 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment D3U04_RS19200 PF03129 Anticodon binding domain D3U04_RS19200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3U04_RS19210 PF07549 SecD/SecF GG Motif D3U04_RS19210 PF02355 Protein export membrane protein D3U04_RS19235 PF00723 Glycosyl hydrolases family 15 D3U04_RS19240 PF00391 PEP-utilising enzyme, mobile domain D3U04_RS19240 PF02896 PEP-utilising enzyme, TIM barrel domain D3U04_RS19240 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D3U04_RS19250 PF13286 Phosphohydrolase-associated domain D3U04_RS19250 PF01966 HD domain D3U04_RS19260 PF07690 Major Facilitator Superfamily D3U04_RS19270 PF04542 Sigma-70 region 2 D3U04_RS19270 PF08281 Sigma-70, region 4 D3U04_RS19270 PF12680 SnoaL-like domain D3U04_RS19290 PF00296 Luciferase-like monooxygenase D3U04_RS19295 PF13411 MerR HTH family regulatory protein D3U04_RS19300 PF01774 UreD urease accessory protein D3U04_RS19305 PF02492 CobW/HypB/UreG, nucleotide-binding domain D3U04_RS19310 PF01730 UreF D3U04_RS19315 PF01979 Amidohydrolase family D3U04_RS19315 PF00449 Urease alpha-subunit, N-terminal domain D3U04_RS19320 PF00699 Urease beta subunit D3U04_RS19325 PF00547 Urease, gamma subunit D3U04_RS19340 PF08275 DNA primase catalytic core, N-terminal domain D3U04_RS19340 PF13662 Toprim domain D3U04_RS19340 PF08278 DNA primase DnaG DnaB-binding D3U04_RS19340 PF01807 CHC2 zinc finger D3U04_RS19340 PF10410 DnaB-helicase binding domain of primase D3U04_RS19345 PF00140 Sigma-70 factor, region 1.2 D3U04_RS19345 PF04542 Sigma-70 region 2 D3U04_RS19345 PF04539 Sigma-70 region 3 D3U04_RS19345 PF04545 Sigma-70, region 4 D3U04_RS19355 PF01906 Putative heavy-metal-binding D3U04_RS19365 PF02342 TerD domain D3U04_RS19370 PF02342 TerD domain D3U04_RS19380 PF02342 TerD domain D3U04_RS19390 PF15608 PELOTA RNA binding domain D3U04_RS19390 PF11202 Phosphoribosyl transferase (PRTase) D3U04_RS19420 PF00589 Phage integrase family D3U04_RS19425 PF12728 Helix-turn-helix domain D3U04_RS19445 PF01580 FtsK/SpoIIIE family D3U04_RS19470 PF12833 Helix-turn-helix domain D3U04_RS19470 PF01965 DJ-1/PfpI family D3U04_RS19505 PF08450 SMP-30/Gluconolactonase/LRE-like region D3U04_RS19510 PF01263 Aldose 1-epimerase D3U04_RS19515 PF01810 LysE type translocator D3U04_RS19530 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS19530 PF00107 Zinc-binding dehydrogenase D3U04_RS19540 PF07694 5TMR of 5TMR-LYT D3U04_RS19540 PF06580 Histidine kinase D3U04_RS19545 PF00072 Response regulator receiver domain D3U04_RS19545 PF04397 LytTr DNA-binding domain D3U04_RS19555 PF00474 Sodium:solute symporter family D3U04_RS19590 PF00474 Sodium:solute symporter family D3U04_RS19600 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS19605 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS19610 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3U04_RS19610 PF00005 ABC transporter D3U04_RS19615 PF00005 ABC transporter D3U04_RS19630 PF07690 Major Facilitator Superfamily D3U04_RS19635 PF07161 LppX_LprAFG lipoprotein D3U04_RS19645 PF01494 FAD binding domain D3U04_RS19650 PF05576 PS-10 peptidase S37 D3U04_RS19655 PF17964 Bacterial Ig domain D3U04_RS19655 PF03734 L,D-transpeptidase catalytic domain D3U04_RS19660 PF00107 Zinc-binding dehydrogenase D3U04_RS19660 PF13823 Alcohol dehydrogenase GroES-associated D3U04_RS19660 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS19675 PF01161 Phosphatidylethanolamine-binding protein D3U04_RS19685 PF05139 Erythromycin esterase D3U04_RS19685 PF00156 Phosphoribosyl transferase domain D3U04_RS19695 PF00501 AMP-binding enzyme D3U04_RS19705 PF03176 MMPL family D3U04_RS19740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3U04_RS19740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3U04_RS19745 PF01910 Thiamine-binding protein D3U04_RS19770 PF00709 Adenylosuccinate synthetase D3U04_RS19790 PF13520 Amino acid permease D3U04_RS19810 PF02583 Metal-sensitive transcriptional repressor D3U04_RS19815 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS19820 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D3U04_RS19820 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D3U04_RS19825 PF01979 Amidohydrolase family D3U04_RS19830 PF02595 Glycerate kinase family D3U04_RS19835 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3U04_RS19835 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3U04_RS19840 PF01014 Uricase D3U04_RS19845 PF00576 HIUase/Transthyretin family D3U04_RS19875 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) D3U04_RS19875 PF05425 Copper resistance protein D D3U04_RS19880 PF07730 Histidine kinase D3U04_RS19885 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS19885 PF00072 Response regulator receiver domain D3U04_RS19890 PF00296 Luciferase-like monooxygenase D3U04_RS19895 PF00501 AMP-binding enzyme D3U04_RS19895 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS19900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS19900 PF03466 LysR substrate binding domain D3U04_RS19905 PF00248 Aldo/keto reductase family D3U04_RS19910 PF13180 PDZ domain D3U04_RS19930 PF00557 Metallopeptidase family M24 D3U04_RS19950 PF02548 Ketopantoate hydroxymethyltransferase D3U04_RS19955 PF07690 Major Facilitator Superfamily D3U04_RS19975 PF00457 Glycosyl hydrolases family 11 D3U04_RS19975 PF01522 Polysaccharide deacetylase D3U04_RS19990 PF01580 FtsK/SpoIIIE family D3U04_RS20050 PF00795 Carbon-nitrogen hydrolase D3U04_RS20050 PF02540 NAD synthase D3U04_RS20055 PF07690 Major Facilitator Superfamily D3U04_RS20070 PF00120 Glutamine synthetase, catalytic domain D3U04_RS20070 PF03951 Glutamine synthetase, beta-Grasp domain D3U04_RS20075 PF03710 Glutamate-ammonia ligase adenylyltransferase D3U04_RS20075 PF08335 GlnD PII-uridylyltransferase D3U04_RS20095 PF03951 Glutamine synthetase, beta-Grasp domain D3U04_RS20095 PF00120 Glutamine synthetase, catalytic domain D3U04_RS20105 PF13829 Domain of unknown function (DUF4191) D3U04_RS20110 PF04055 Radical SAM superfamily D3U04_RS20120 PF03099 Biotin/lipoate A/B protein ligase family D3U04_RS20125 PF03575 Peptidase family S51 D3U04_RS20130 PF01370 NAD dependent epimerase/dehydratase family D3U04_RS20130 PF08338 Domain of unknown function (DUF1731) D3U04_RS20135 PF00364 Biotin-requiring enzyme D3U04_RS20135 PF02817 e3 binding domain D3U04_RS20135 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D3U04_RS20140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3U04_RS20140 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS20145 PF00883 Cytosol aminopeptidase family, catalytic domain D3U04_RS20145 PF02789 Cytosol aminopeptidase family, N-terminal domain D3U04_RS20150 PF02654 Cobalamin-5-phosphate synthase D3U04_RS20155 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase D3U04_RS20165 PF00248 Aldo/keto reductase family D3U04_RS20170 PF11241 Protein of unknown function (DUF3043) D3U04_RS20185 PF02445 Quinolinate synthetase A protein D3U04_RS20190 PF01521 Iron-sulphur cluster biosynthesis D3U04_RS20195 PF00294 pfkB family carbohydrate kinase D3U04_RS20200 PF01206 Sulfurtransferase TusA D3U04_RS20205 PF00266 Aminotransferase class-V D3U04_RS20210 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D3U04_RS20215 PF00115 Cytochrome C and Quinol oxidase polypeptide I D3U04_RS20220 PF12270 Cytochrome c oxidase subunit IV D3U04_RS20225 PF17964 Bacterial Ig domain D3U04_RS20225 PF03734 L,D-transpeptidase catalytic domain D3U04_RS20230 PF16491 CAAX prenyl protease N-terminal, five membrane helices D3U04_RS20230 PF01435 Peptidase family M48 D3U04_RS20245 PF00877 NlpC/P60 family D3U04_RS20245 PF01476 LysM domain D3U04_RS20245 PF08239 Bacterial SH3 domain D3U04_RS20255 PF00929 Exonuclease D3U04_RS20255 PF01541 GIY-YIG catalytic domain D3U04_RS20270 PF00591 Glycosyl transferase family, a/b domain D3U04_RS20270 PF02885 Glycosyl transferase family, helical bundle domain D3U04_RS20280 PF00510 Cytochrome c oxidase subunit III D3U04_RS20285 PF00034 Cytochrome c D3U04_RS20285 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D3U04_RS20290 PF00355 Rieske [2Fe-2S] domain D3U04_RS20295 PF13631 Cytochrome b(N-terminal)/b6/petB D3U04_RS20300 PF00534 Glycosyl transferases group 1 D3U04_RS20300 PF13439 Glycosyltransferase Family 4 D3U04_RS20305 PF18416 N-acetylglucosamine binding protein domain 2 D3U04_RS20305 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading D3U04_RS20355 PF00501 AMP-binding enzyme D3U04_RS20360 PF03932 CutC family D3U04_RS20375 PF00480 ROK family D3U04_RS20405 PF00072 Response regulator receiver domain D3U04_RS20405 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS20425 PF05114 Protein of unknown function (DUF692) D3U04_RS20430 PF00365 Phosphofructokinase D3U04_RS20435 PF02926 THUMP domain D3U04_RS20435 PF02568 Thiamine biosynthesis protein (ThiI) D3U04_RS20445 PF00892 EamA-like transporter family D3U04_RS20450 PF18152 DAHP synthase ferredoxin-like domain D3U04_RS20450 PF00793 DAHP synthetase I family D3U04_RS20455 PF00174 Oxidoreductase molybdopterin binding domain D3U04_RS20460 PF04397 LytTr DNA-binding domain D3U04_RS20460 PF00072 Response regulator receiver domain D3U04_RS20470 PF00069 Protein kinase domain D3U04_RS20470 PF03793 PASTA domain D3U04_RS20475 PF05690 Thiazole biosynthesis protein ThiG D3U04_RS20490 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS20490 PF14759 Reductase C-terminal D3U04_RS20495 PF18367 Rv2175c C-terminal domain of unknown function D3U04_RS20500 PF02581 Thiamine monophosphate synthase D3U04_RS20505 PF00069 Protein kinase domain D3U04_RS20505 PF00400 WD domain, G-beta repeat D3U04_RS20510 PF00348 Polyprenyl synthetase D3U04_RS20540 PF03960 ArsC family D3U04_RS20570 PF00156 Phosphoribosyl transferase domain D3U04_RS20575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3U04_RS20575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3U04_RS20580 PF01979 Amidohydrolase family D3U04_RS20585 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D3U04_RS20585 PF00117 Glutamine amidotransferase class-I D3U04_RS20590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D3U04_RS20590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3U04_RS20590 PF02142 MGS-like domain D3U04_RS20595 PF00175 Oxidoreductase NAD-binding domain D3U04_RS20595 PF00970 Oxidoreductase FAD-binding domain D3U04_RS20595 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B D3U04_RS20600 PF01180 Dihydroorotate dehydrogenase D3U04_RS20605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D3U04_RS20615 PF00625 Guanylate kinase D3U04_RS20620 PF01192 RNA polymerase Rpb6 D3U04_RS20625 PF04127 DNA / pantothenate metabolism flavoprotein D3U04_RS20625 PF02441 Flavoprotein D3U04_RS20630 PF02773 S-adenosylmethionine synthetase, C-terminal domain D3U04_RS20630 PF02772 S-adenosylmethionine synthetase, central domain D3U04_RS20630 PF00438 S-adenosylmethionine synthetase, N-terminal domain D3U04_RS20635 PF17764 3′ DNA-binding domain (3′BD) D3U04_RS20645 PF01327 Polypeptide deformylase D3U04_RS20650 PF00551 Formyl transferase D3U04_RS20650 PF02911 Formyl transferase, C-terminal domain D3U04_RS20655 PF01189 16S rRNA methyltransferase RsmB/F D3U04_RS20655 PF01029 NusB family D3U04_RS20665 PF00834 Ribulose-phosphate 3 epimerase family D3U04_RS20675 PF13419 Haloacid dehalogenase-like hydrolase D3U04_RS20685 PF00677 Lumazine binding domain D3U04_RS20690 PF04973 Nicotinamide mononucleotide transporter D3U04_RS20695 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D3U04_RS20695 PF00925 GTP cyclohydrolase II D3U04_RS20700 PF00885 6,7-dimethyl-8-ribityllumazine synthase D3U04_RS20705 PF08029 HisG, C-terminal domain D3U04_RS20705 PF01634 ATP phosphoribosyltransferase D3U04_RS20720 PF00672 HAMP domain D3U04_RS20720 PF07228 Stage II sporulation protein E (SpoIIE) D3U04_RS20730 PF04261 Dyp-type peroxidase family D3U04_RS20735 PF04314 Copper chaperone PCu(A)C D3U04_RS20745 PF02515 CoA-transferase family III D3U04_RS20755 PF05694 56kDa selenium binding protein (SBP56) D3U04_RS20775 PF13478 XdhC Rossmann domain D3U04_RS20775 PF02625 XdhC and CoxI family D3U04_RS20785 PF00005 ABC transporter D3U04_RS20795 PF00072 Response regulator receiver domain D3U04_RS20795 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS20800 PF12804 MobA-like NTP transferase domain D3U04_RS20810 PF02625 XdhC and CoxI family D3U04_RS20810 PF13478 XdhC Rossmann domain D3U04_RS20820 PF07690 Major Facilitator Superfamily D3U04_RS20830 PF06545 Protein of unknown function (DUF1116) D3U04_RS20835 PF02629 CoA binding domain D3U04_RS20835 PF00549 CoA-ligase D3U04_RS20840 PF11392 Protein of unknown function (DUF2877) D3U04_RS20850 PF00860 Permease family D3U04_RS20855 PF03450 CO dehydrogenase flavoprotein C-terminal domain D3U04_RS20855 PF00941 FAD binding domain in molybdopterin dehydrogenase D3U04_RS20860 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS20860 PF01799 [2Fe-2S] binding domain D3U04_RS20865 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D3U04_RS20865 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D3U04_RS20880 PF00795 Carbon-nitrogen hydrolase D3U04_RS20885 PF07724 AAA domain (Cdc48 subfamily) D3U04_RS20885 PF17871 AAA lid domain D3U04_RS20885 PF10431 C-terminal, D2-small domain, of ClpB protein D3U04_RS20885 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS20885 PF02861 Clp amino terminal domain, pathogenicity island component D3U04_RS20900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D3U04_RS20905 PF05378 Hydantoinase/oxoprolinase N-terminal region D3U04_RS20905 PF01968 Hydantoinase/oxoprolinase D3U04_RS20910 PF02538 Hydantoinase B/oxoprolinase D3U04_RS20920 PF00795 Carbon-nitrogen hydrolase D3U04_RS20925 PF00005 ABC transporter D3U04_RS20935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS20935 PF07730 Histidine kinase D3U04_RS20940 PF00072 Response regulator receiver domain D3U04_RS20940 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS20950 PF00155 Aminotransferase class I and II D3U04_RS20960 PF00696 Amino acid kinase family D3U04_RS20965 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) D3U04_RS20985 PF00756 Putative esterase D3U04_RS20985 PF01476 LysM domain D3U04_RS20990 PF01264 Chorismate synthase D3U04_RS20995 PF01202 Shikimate kinase D3U04_RS21000 PF01761 3-dehydroquinate synthase D3U04_RS21005 PF01220 Dehydroquinase class II D3U04_RS21010 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS21020 PF00296 Luciferase-like monooxygenase D3U04_RS21025 PF00557 Metallopeptidase family M24 D3U04_RS21025 PF01321 Creatinase/Prolidase N-terminal domain D3U04_RS21030 PF08207 Elongation factor P (EF-P) KOW-like domain D3U04_RS21030 PF01132 Elongation factor P (EF-P) OB domain D3U04_RS21030 PF09285 Elongation factor P, C-terminal D3U04_RS21035 PF01029 NusB family D3U04_RS21045 PF00817 impB/mucB/samB family D3U04_RS21045 PF11799 impB/mucB/samB family C-terminal domain D3U04_RS21065 PF07726 ATPase family associated with various cellular activities (AAA) D3U04_RS21065 PF17863 AAA lid domain D3U04_RS21070 PF02381 MraZ protein, putative antitoxin-like D3U04_RS21075 PF01795 MraW methylase family D3U04_RS21085 PF03717 Penicillin-binding Protein dimerisation domain D3U04_RS21085 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS21090 PF01225 Mur ligase family, catalytic domain D3U04_RS21090 PF02875 Mur ligase family, glutamate ligase domain D3U04_RS21090 PF08245 Mur ligase middle domain D3U04_RS21095 PF01225 Mur ligase family, catalytic domain D3U04_RS21095 PF02875 Mur ligase family, glutamate ligase domain D3U04_RS21095 PF08245 Mur ligase middle domain D3U04_RS21100 PF00953 Glycosyl transferase family 4 D3U04_RS21100 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D3U04_RS21105 PF08245 Mur ligase middle domain D3U04_RS21110 PF01098 Cell cycle protein D3U04_RS21115 PF03033 Glycosyltransferase family 28 N-terminal domain D3U04_RS21115 PF04101 Glycosyltransferase family 28 C-terminal domain D3U04_RS21120 PF01225 Mur ligase family, catalytic domain D3U04_RS21120 PF08245 Mur ligase middle domain D3U04_RS21120 PF02875 Mur ligase family, glutamate ligase domain D3U04_RS21125 PF03799 Cell division protein FtsQ D3U04_RS21125 PF08478 POTRA domain, FtsQ-type D3U04_RS21130 PF12327 FtsZ family, C-terminal domain D3U04_RS21130 PF00091 Tubulin/FtsZ family, GTPase domain D3U04_RS21135 PF01168 Alanine racemase, N-terminal domain D3U04_RS21140 PF04472 Cell division protein SepF D3U04_RS21150 PF05103 DivIVA protein D3U04_RS21170 PF00133 tRNA synthetases class I (I, L, M and V) D3U04_RS21170 PF08264 Anticodon-binding domain of tRNA D3U04_RS21175 PF02594 Uncharacterised ACR, YggU family COG1872 D3U04_RS21180 PF01258 Prokaryotic dksA/traR C4-type zinc finger D3U04_RS21185 PF01252 Signal peptidase (SPase) II D3U04_RS21190 PF00849 RNA pseudouridylate synthase D3U04_RS21225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D3U04_RS21225 PF07733 Bacterial DNA polymerase III alpha NTPase domain D3U04_RS21225 PF02811 PHP domain D3U04_RS21225 PF14579 Helix-hairpin-helix motif D3U04_RS21255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D3U04_RS21255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D3U04_RS21255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D3U04_RS21265 PF04073 Aminoacyl-tRNA editing domain D3U04_RS21275 PF00815 Histidinol dehydrogenase D3U04_RS21280 PF00155 Aminotransferase class I and II D3U04_RS21285 PF00475 Imidazoleglycerol-phosphate dehydratase D3U04_RS21290 PF00117 Glutamine amidotransferase class-I D3U04_RS21295 PF00977 Histidine biosynthesis protein D3U04_RS21305 PF00977 Histidine biosynthesis protein D3U04_RS21310 PF08962 Domain of unknown function (DUF1876) D3U04_RS21315 PF16655 PhoD-like phosphatase, N-terminal domain D3U04_RS21315 PF09423 PhoD-like phosphatase D3U04_RS21325 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS21325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS21325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS21345 PF00664 ABC transporter transmembrane region D3U04_RS21345 PF00005 ABC transporter D3U04_RS21350 PF00664 ABC transporter transmembrane region D3U04_RS21350 PF00005 ABC transporter D3U04_RS21355 PF00313 'Cold-shock' DNA-binding domain D3U04_RS21360 PF01502 Phosphoribosyl-AMP cyclohydrolase D3U04_RS21370 PF00072 Response regulator receiver domain D3U04_RS21370 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS21380 PF00218 Indole-3-glycerol phosphate synthase D3U04_RS21385 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS21390 PF00290 Tryptophan synthase alpha chain D3U04_RS21425 PF04898 Glutamate synthase central domain D3U04_RS21425 PF00310 Glutamine amidotransferases class-II D3U04_RS21425 PF01493 GXGXG motif D3U04_RS21425 PF01645 Conserved region in glutamate synthase D3U04_RS21430 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS21430 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D3U04_RS21440 PF12833 Helix-turn-helix domain D3U04_RS21445 PF01965 DJ-1/PfpI family D3U04_RS21450 PF00224 Pyruvate kinase, barrel domain D3U04_RS21450 PF02887 Pyruvate kinase, alpha/beta domain D3U04_RS21465 PF00072 Response regulator receiver domain D3U04_RS21465 PF03861 ANTAR domain D3U04_RS21475 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS21480 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS21480 PF11862 Domain of unknown function (DUF3382) D3U04_RS21485 PF12399 Branched-chain amino acid ATP-binding cassette transporter D3U04_RS21485 PF00005 ABC transporter D3U04_RS21490 PF00005 ABC transporter D3U04_RS21500 PF03061 Thioesterase superfamily D3U04_RS21505 PF01367 5'-3' exonuclease, C-terminal SAM fold D3U04_RS21505 PF00476 DNA polymerase family A D3U04_RS21505 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3U04_RS21510 PF01522 Polysaccharide deacetylase D3U04_RS21515 PF00575 S1 RNA binding domain D3U04_RS21535 PF07730 Histidine kinase D3U04_RS21535 PF05231 MASE1 D3U04_RS21535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS21540 PF02151 UvrB/uvrC motif D3U04_RS21540 PF04851 Type III restriction enzyme, res subunit D3U04_RS21540 PF12344 Ultra-violet resistance protein B D3U04_RS21540 PF00271 Helicase conserved C-terminal domain D3U04_RS21540 PF17757 UvrB interaction domain D3U04_RS21545 PF00583 Acetyltransferase (GNAT) family D3U04_RS21555 PF13472 GDSL-like Lipase/Acylhydrolase family D3U04_RS21560 PF03060 Nitronate monooxygenase D3U04_RS21575 PF00561 alpha/beta hydrolase fold D3U04_RS21585 PF06418 CTP synthase N-terminus D3U04_RS21585 PF00117 Glutamine amidotransferase class-I D3U04_RS21590 PF00293 NUDIX domain D3U04_RS21595 PF02899 Phage integrase, N-terminal SAM-like domain D3U04_RS21595 PF00589 Phage integrase family D3U04_RS21600 PF13614 AAA domain D3U04_RS21605 PF02616 Segregation and condensation protein ScpA D3U04_RS21610 PF04079 Segregation and condensation complex subunit ScpB D3U04_RS21615 PF01479 S4 domain D3U04_RS21615 PF00849 RNA pseudouridylate synthase D3U04_RS21620 PF07736 Chorismate mutase type I D3U04_RS21625 PF02153 Prephenate dehydrogenase D3U04_RS21630 PF02224 Cytidylate kinase D3U04_RS21635 PF01926 50S ribosome-binding GTPase D3U04_RS21635 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D3U04_RS21650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3U04_RS21655 PF12833 Helix-turn-helix domain D3U04_RS21675 PF03459 TOBE domain D3U04_RS21675 PF00005 ABC transporter D3U04_RS21680 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain D3U04_RS21680 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain D3U04_RS21690 PF00376 MerR family regulatory protein D3U04_RS21690 PF09278 MerR, DNA binding D3U04_RS21695 PF01545 Cation efflux family D3U04_RS21695 PF16916 Dimerisation domain of Zinc Transporter D3U04_RS21700 PF03633 Glycosyl hydrolase family 65, C-terminal domain D3U04_RS21700 PF03632 Glycosyl hydrolase family 65 central catalytic domain D3U04_RS21700 PF03636 Glycosyl hydrolase family 65, N-terminal domain D3U04_RS21705 PF13419 Haloacid dehalogenase-like hydrolase D3U04_RS21710 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D3U04_RS21710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3U04_RS21715 PF00331 Glycosyl hydrolase family 10 D3U04_RS21715 PF00652 Ricin-type beta-trefoil lectin domain D3U04_RS21720 PF00271 Helicase conserved C-terminal domain D3U04_RS21720 PF08148 DSHCT (NUC185) domain D3U04_RS21720 PF00270 DEAD/DEAH box helicase D3U04_RS21750 PF12695 Alpha/beta hydrolase family D3U04_RS21755 PF02567 Phenazine biosynthesis-like protein D3U04_RS21775 PF13520 Amino acid permease D3U04_RS21780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D3U04_RS21785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D3U04_RS21795 PF00571 CBS domain D3U04_RS21800 PF00072 Response regulator receiver domain D3U04_RS21800 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS21805 PF07730 Histidine kinase D3U04_RS21815 PF03176 MMPL family D3U04_RS21825 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS21830 PF02541 Ppx/GppA phosphatase family D3U04_RS21840 PF00069 Protein kinase domain D3U04_RS21840 PF00400 WD domain, G-beta repeat D3U04_RS21845 PF13360 PQQ-like domain D3U04_RS21845 PF01011 PQQ enzyme repeat D3U04_RS21845 PF13570 PQQ-like domain D3U04_RS21845 PF00069 Protein kinase domain D3U04_RS21850 PF01494 FAD binding domain D3U04_RS21860 PF12894 Anaphase-promoting complex subunit 4 WD40 domain D3U04_RS21860 PF00400 WD domain, G-beta repeat D3U04_RS21865 PF03466 LysR substrate binding domain D3U04_RS21865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS21880 PF07690 Major Facilitator Superfamily D3U04_RS21885 PF00067 Cytochrome P450 D3U04_RS21890 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS21890 PF00970 Oxidoreductase FAD-binding domain D3U04_RS21895 PF07690 Major Facilitator Superfamily D3U04_RS21910 PF13472 GDSL-like Lipase/Acylhydrolase family D3U04_RS21915 PF00211 Adenylate and Guanylate cyclase catalytic domain D3U04_RS21915 PF00069 Protein kinase domain D3U04_RS21930 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS21930 PF00107 Zinc-binding dehydrogenase D3U04_RS21935 PF16363 GDP-mannose 4,6 dehydratase D3U04_RS21940 PF01226 Formate/nitrite transporter D3U04_RS21960 PF16655 PhoD-like phosphatase, N-terminal domain D3U04_RS21960 PF09423 PhoD-like phosphatase D3U04_RS21970 PF04978 Protein of unknown function (DUF664) D3U04_RS21990 PF07690 Major Facilitator Superfamily D3U04_RS21995 PF12833 Helix-turn-helix domain D3U04_RS21995 PF02311 AraC-like ligand binding domain D3U04_RS22010 PF06441 Epoxide hydrolase N terminus D3U04_RS22020 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D3U04_RS22025 PF07859 alpha/beta hydrolase fold D3U04_RS22035 PF01047 MarR family D3U04_RS22075 PF02633 Creatinine amidohydrolase D3U04_RS22105 PF13407 Periplasmic binding protein domain D3U04_RS22110 PF00005 ABC transporter D3U04_RS22115 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS22125 PF00480 ROK family D3U04_RS22130 PF00248 Aldo/keto reductase family D3U04_RS22135 PF03060 Nitronate monooxygenase D3U04_RS22145 PF00270 DEAD/DEAH box helicase D3U04_RS22145 PF11898 Domain of unknown function (DUF3418) D3U04_RS22145 PF04408 Helicase associated domain (HA2) D3U04_RS22145 PF00271 Helicase conserved C-terminal domain D3U04_RS22145 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D3U04_RS22155 PF01494 FAD binding domain D3U04_RS22200 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) D3U04_RS22215 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS22215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS22215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS22225 PF00106 short chain dehydrogenase D3U04_RS22235 PF00553 Cellulose binding domain D3U04_RS22235 PF00041 Fibronectin type III domain D3U04_RS22235 PF00704 Glycosyl hydrolases family 18 D3U04_RS22245 PF00575 S1 RNA binding domain D3U04_RS22245 PF09371 Tex-like protein N-terminal domain D3U04_RS22245 PF17674 HHH domain D3U04_RS22245 PF16921 Tex protein YqgF-like domain D3U04_RS22255 PF00293 NUDIX domain D3U04_RS22265 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain D3U04_RS22270 PF00749 tRNA synthetases class I (E and Q), catalytic domain D3U04_RS22275 PF00072 Response regulator receiver domain D3U04_RS22280 PF09308 LuxQ, periplasmic D3U04_RS22280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS22280 PF00072 Response regulator receiver domain D3U04_RS22280 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS22300 PF01474 Class-II DAHP synthetase family D3U04_RS22305 PF04545 Sigma-70, region 4 D3U04_RS22305 PF04539 Sigma-70 region 3 D3U04_RS22305 PF04542 Sigma-70 region 2 D3U04_RS22305 PF00140 Sigma-70 factor, region 1.2 D3U04_RS22310 PF00085 Thioredoxin D3U04_RS22335 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS22335 PF08361 MAATS-type transcriptional repressor, C-terminal region D3U04_RS22345 PF01039 Carboxyl transferase domain D3U04_RS22350 PF00289 Biotin carboxylase, N-terminal domain D3U04_RS22350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3U04_RS22350 PF00364 Biotin-requiring enzyme D3U04_RS22350 PF02785 Biotin carboxylase C-terminal domain D3U04_RS22355 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS22355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS22355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS22365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D3U04_RS22365 PF13378 Enolase C-terminal domain-like D3U04_RS22380 PF03816 Cell envelope-related transcriptional attenuator domain D3U04_RS22385 PF00478 IMP dehydrogenase / GMP reductase domain D3U04_RS22385 PF00571 CBS domain D3U04_RS22390 PF13404 AsnC-type helix-turn-helix domain D3U04_RS22390 PF01037 Lrp/AsnC ligand binding domain D3U04_RS22395 PF00999 Sodium/hydrogen exchanger family D3U04_RS22400 PF03466 LysR substrate binding domain D3U04_RS22400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS22410 PF07690 Major Facilitator Superfamily D3U04_RS22420 PF16363 GDP-mannose 4,6 dehydratase D3U04_RS22425 PF00809 Pterin binding enzyme D3U04_RS22465 PF00155 Aminotransferase class I and II D3U04_RS22470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS22470 PF03466 LysR substrate binding domain D3U04_RS22485 PF17964 Bacterial Ig domain D3U04_RS22485 PF03734 L,D-transpeptidase catalytic domain D3U04_RS22510 PF00877 NlpC/P60 family D3U04_RS22600 PF01807 CHC2 zinc finger D3U04_RS22600 PF08278 DNA primase DnaG DnaB-binding D3U04_RS22600 PF13662 Toprim domain D3U04_RS22600 PF10410 DnaB-helicase binding domain of primase D3U04_RS22600 PF08275 DNA primase catalytic core, N-terminal domain D3U04_RS22615 PF13613 Helix-turn-helix of DDE superfamily endonuclease D3U04_RS22615 PF01609 Transposase DDE domain D3U04_RS22660 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS22660 PF00293 NUDIX domain D3U04_RS22695 PF01872 RibD C-terminal domain D3U04_RS22745 PF03781 Sulfatase-modifying factor enzyme 1 D3U04_RS22750 PF05958 tRNA (Uracil-5-)-methyltransferase D3U04_RS22750 PF01938 TRAM domain D3U04_RS22755 PF18019 HD domain D3U04_RS22755 PF00270 DEAD/DEAH box helicase D3U04_RS22755 PF18395 Cas3 C-terminal domain D3U04_RS22785 PF01867 CRISPR associated protein Cas1 D3U04_RS22790 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) D3U04_RS22810 PF16295 Tetracyclin repressor-like, C-terminal domain D3U04_RS22810 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS22815 PF01526 Tn3 transposase DDE domain D3U04_RS22815 PF13700 Domain of unknown function (DUF4158) D3U04_RS22865 PF00589 Phage integrase family D3U04_RS22865 PF02899 Phage integrase, N-terminal SAM-like domain D3U04_RS22875 PF00331 Glycosyl hydrolase family 10 D3U04_RS22875 PF00652 Ricin-type beta-trefoil lectin domain D3U04_RS22880 PF00652 Ricin-type beta-trefoil lectin domain D3U04_RS22880 PF03664 Glycosyl hydrolase family 62 D3U04_RS22885 PF00107 Zinc-binding dehydrogenase D3U04_RS22885 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS22900 PF00561 alpha/beta hydrolase fold D3U04_RS22905 PF03176 MMPL family D3U04_RS22910 PF07690 Major Facilitator Superfamily D3U04_RS22930 PF04542 Sigma-70 region 2 D3U04_RS22930 PF08281 Sigma-70, region 4 D3U04_RS22935 PF01872 RibD C-terminal domain D3U04_RS22950 PF13847 Methyltransferase domain D3U04_RS22955 PF01022 Bacterial regulatory protein, arsR family D3U04_RS22960 PF01758 Sodium Bile acid symporter family D3U04_RS22965 PF01022 Bacterial regulatory protein, arsR family D3U04_RS22970 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3U04_RS22985 PF01022 Bacterial regulatory protein, arsR family D3U04_RS22990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3U04_RS23000 PF16859 Tetracyclin repressor-like, C-terminal domain D3U04_RS23000 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS23005 PF00248 Aldo/keto reductase family D3U04_RS23025 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS23025 PF00072 Response regulator receiver domain D3U04_RS23030 PF07730 Histidine kinase D3U04_RS23030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS23030 PF13185 GAF domain D3U04_RS23030 PF13492 GAF domain D3U04_RS23040 PF07730 Histidine kinase D3U04_RS23040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS23040 PF13492 GAF domain D3U04_RS23040 PF13185 GAF domain D3U04_RS23045 PF00582 Universal stress protein family D3U04_RS23050 PF00582 Universal stress protein family D3U04_RS23075 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D3U04_RS23080 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS23080 PF00501 AMP-binding enzyme D3U04_RS23085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS23085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS23085 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS23140 PF04228 Putative neutral zinc metallopeptidase D3U04_RS23145 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS23145 PF14759 Reductase C-terminal D3U04_RS23150 PF01227 GTP cyclohydrolase I D3U04_RS23170 PF12680 SnoaL-like domain D3U04_RS23170 PF08281 Sigma-70, region 4 D3U04_RS23170 PF04542 Sigma-70 region 2 D3U04_RS23175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3U04_RS23175 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS23190 PF01266 FAD dependent oxidoreductase D3U04_RS23190 PF00355 Rieske [2Fe-2S] domain D3U04_RS23205 PF01740 STAS domain D3U04_RS23215 PF03631 Virulence factor BrkB D3U04_RS23220 PF00069 Protein kinase domain D3U04_RS23225 PF00893 Small Multidrug Resistance protein D3U04_RS23250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS23250 PF03466 LysR substrate binding domain D3U04_RS23270 PF07690 Major Facilitator Superfamily D3U04_RS23285 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3U04_RS23285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3U04_RS23290 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS23295 PF00596 Class II Aldolase and Adducin N-terminal domain D3U04_RS23300 PF11762 L-arabinose isomerase C-terminal domain D3U04_RS23300 PF02610 L-arabinose isomerase D3U04_RS23305 PF13407 Periplasmic binding protein domain D3U04_RS23310 PF00005 ABC transporter D3U04_RS23315 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS23320 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS23330 PF00553 Cellulose binding domain D3U04_RS23330 PF00331 Glycosyl hydrolase family 10 D3U04_RS23415 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS23415 PF17866 AAA lid domain D3U04_RS23455 PF01223 DNA/RNA non-specific endonuclease D3U04_RS23470 PF00296 Luciferase-like monooxygenase D3U04_RS23495 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS23495 PF00107 Zinc-binding dehydrogenase D3U04_RS23505 PF00764 Arginosuccinate synthase D3U04_RS23530 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS23530 PF17754 MftR C-terminal domain D3U04_RS23535 PF00732 GMC oxidoreductase D3U04_RS23535 PF05199 GMC oxidoreductase D3U04_RS23550 PF13186 Iron-sulfur cluster-binding domain D3U04_RS23550 PF04055 Radical SAM superfamily D3U04_RS23555 PF01070 FMN-dependent dehydrogenase D3U04_RS23560 PF02633 Creatinine amidohydrolase D3U04_RS23605 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS23605 PF00072 Response regulator receiver domain D3U04_RS23610 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS23610 PF02702 Osmosensitive K+ channel His kinase sensor domain D3U04_RS23610 PF00582 Universal stress protein family D3U04_RS23610 PF13493 Domain of unknown function (DUF4118) D3U04_RS23610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS23615 PF02669 K+-transporting ATPase, c chain D3U04_RS23625 PF03814 Potassium-transporting ATPase A subunit D3U04_RS23640 PF13847 Methyltransferase domain D3U04_RS23640 PF03551 Transcriptional regulator PadR-like family D3U04_RS23650 PF00270 DEAD/DEAH box helicase D3U04_RS23650 PF00271 Helicase conserved C-terminal domain D3U04_RS23655 PF00313 'Cold-shock' DNA-binding domain D3U04_RS23665 PF00156 Phosphoribosyl transferase domain D3U04_RS23670 PF00144 Beta-lactamase D3U04_RS23670 PF11954 Domain of unknown function (DUF3471) D3U04_RS23690 PF01047 MarR family D3U04_RS23700 PF00535 Glycosyl transferase family 2 D3U04_RS23710 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D3U04_RS23710 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D3U04_RS23745 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS23765 PF00067 Cytochrome P450 D3U04_RS23785 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS23785 PF00501 AMP-binding enzyme D3U04_RS23825 PF01565 FAD binding domain D3U04_RS23825 PF08031 Berberine and berberine like D3U04_RS23840 PF00857 Isochorismatase family D3U04_RS23845 PF07729 FCD domain D3U04_RS23845 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS23850 PF01565 FAD binding domain D3U04_RS23850 PF02913 FAD linked oxidases, C-terminal domain D3U04_RS23855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS23855 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS23855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS23860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS23860 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS23860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS23865 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS23865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS23865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS23870 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS23875 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS23880 PF00480 ROK family D3U04_RS23895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS23895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS23895 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS23910 PF00067 Cytochrome P450 D3U04_RS23915 PF01642 Methylmalonyl-CoA mutase D3U04_RS23950 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS23955 PF00596 Class II Aldolase and Adducin N-terminal domain D3U04_RS23960 PF17853 GGDEF-like domain D3U04_RS23960 PF13556 PucR C-terminal helix-turn-helix domain D3U04_RS23965 PF00893 Small Multidrug Resistance protein D3U04_RS23970 PF06803 Protein of unknown function (DUF1232) D3U04_RS23975 PF01810 LysE type translocator D3U04_RS23980 PF00171 Aldehyde dehydrogenase family D3U04_RS24000 PF00005 ABC transporter D3U04_RS24015 PF00463 Isocitrate lyase family D3U04_RS24025 PF00535 Glycosyl transferase family 2 D3U04_RS24030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS24030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS24030 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS24035 PF13977 BetI-type transcriptional repressor, C-terminal D3U04_RS24035 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS24065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3U04_RS24070 PF04715 Anthranilate synthase component I, N terminal region D3U04_RS24070 PF00117 Glutamine amidotransferase class-I D3U04_RS24070 PF00425 chorismate binding enzyme D3U04_RS24075 PF00384 Molybdopterin oxidoreductase D3U04_RS24075 PF01568 Molydopterin dinucleotide binding domain D3U04_RS24075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3U04_RS24090 PF00005 ABC transporter D3U04_RS24095 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS24095 PF00072 Response regulator receiver domain D3U04_RS24100 PF07730 Histidine kinase D3U04_RS24105 PF00394 Multicopper oxidase D3U04_RS24105 PF07731 Multicopper oxidase D3U04_RS24105 PF07732 Multicopper oxidase D3U04_RS24115 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS24115 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS24120 PF00106 short chain dehydrogenase D3U04_RS24125 PF06722 Protein of unknown function (DUF1205) D3U04_RS24140 PF00483 Nucleotidyl transferase D3U04_RS24140 PF00132 Bacterial transferase hexapeptide (six repeats) D3U04_RS24155 PF01011 PQQ enzyme repeat D3U04_RS24155 PF13360 PQQ-like domain D3U04_RS24170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3U04_RS24170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3U04_RS24175 PF01039 Carboxyl transferase domain D3U04_RS24175 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D3U04_RS24185 PF04673 Polyketide synthesis cyclase D3U04_RS24190 PF07883 Cupin domain D3U04_RS24195 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS24195 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS24200 PF00891 O-methyltransferase domain D3U04_RS24200 PF03364 Polyketide cyclase / dehydrase and lipid transport D3U04_RS24205 PF00550 Phosphopantetheine attachment site D3U04_RS24210 PF03364 Polyketide cyclase / dehydrase and lipid transport D3U04_RS24235 PF01061 ABC-2 type transporter D3U04_RS24240 PF00005 ABC transporter D3U04_RS24240 PF13732 Domain of unknown function (DUF4162) D3U04_RS24245 PF02785 Biotin carboxylase C-terminal domain D3U04_RS24245 PF00289 Biotin carboxylase, N-terminal domain D3U04_RS24245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3U04_RS24250 PF00364 Biotin-requiring enzyme D3U04_RS24260 PF01654 Cytochrome bd terminal oxidase subunit I D3U04_RS24265 PF02322 Cytochrome bd terminal oxidase subunit II D3U04_RS24270 PF03412 Peptidase C39 family D3U04_RS24270 PF00664 ABC transporter transmembrane region D3U04_RS24270 PF00005 ABC transporter D3U04_RS24275 PF00664 ABC transporter transmembrane region D3U04_RS24275 PF00005 ABC transporter D3U04_RS24285 PF00753 Metallo-beta-lactamase superfamily D3U04_RS24290 PF00067 Cytochrome P450 D3U04_RS24295 PF01494 FAD binding domain D3U04_RS24305 PF01494 FAD binding domain D3U04_RS24310 PF01494 FAD binding domain D3U04_RS24315 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS24315 PF00931 NB-ARC domain D3U04_RS24315 PF03704 Bacterial transcriptional activator domain D3U04_RS24325 PF00067 Cytochrome P450 D3U04_RS24340 PF00975 Thioesterase domain D3U04_RS24345 PF17837 4'-phosphopantetheinyl transferase N-terminal domain D3U04_RS24345 PF01648 4'-phosphopantetheinyl transferase superfamily D3U04_RS24350 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS24350 PF00550 Phosphopantetheine attachment site D3U04_RS24350 PF14765 Polyketide synthase dehydratase D3U04_RS24350 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS24350 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS24350 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS24350 PF00698 Acyl transferase domain D3U04_RS24350 PF08659 KR domain D3U04_RS24355 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS24355 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS24355 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS24355 PF08659 KR domain D3U04_RS24355 PF00550 Phosphopantetheine attachment site D3U04_RS24355 PF14765 Polyketide synthase dehydratase D3U04_RS24355 PF00698 Acyl transferase domain D3U04_RS24360 PF00854 POT family D3U04_RS24370 PF03061 Thioesterase superfamily D3U04_RS24380 PF00753 Metallo-beta-lactamase superfamily D3U04_RS24385 PF00175 Oxidoreductase NAD-binding domain D3U04_RS24385 PF00970 Oxidoreductase FAD-binding domain D3U04_RS24385 PF00111 2Fe-2S iron-sulfur cluster binding domain D3U04_RS24390 PF07722 Peptidase C26 D3U04_RS24395 PF07859 alpha/beta hydrolase fold D3U04_RS24400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS24400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS24400 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS24405 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS24410 PF04389 Peptidase family M28 D3U04_RS24410 PF02225 PA domain D3U04_RS24415 PF17102 Stealth protein CR3, conserved region 3 D3U04_RS24415 PF11380 Stealth protein CR2, conserved region 2 D3U04_RS24415 PF00534 Glycosyl transferases group 1 D3U04_RS24415 PF17103 Stealth protein CR4, conserved region 4 D3U04_RS24415 PF17101 Stealth protein CR1, conserved region 1 D3U04_RS24425 PF01494 FAD binding domain D3U04_RS24430 PF00206 Lyase D3U04_RS24430 PF10397 Adenylosuccinate lyase C-terminus D3U04_RS24435 PF09339 IclR helix-turn-helix domain D3U04_RS24435 PF01614 Bacterial transcriptional regulator D3U04_RS24440 PF00331 Glycosyl hydrolase family 10 D3U04_RS24440 PF00553 Cellulose binding domain D3U04_RS24445 PF00150 Cellulase (glycosyl hydrolase family 5) D3U04_RS24445 PF02013 Cellulose or protein binding domain D3U04_RS24450 PF01717 Cobalamin-independent synthase, Catalytic domain D3U04_RS24460 PF07690 Major Facilitator Superfamily D3U04_RS24465 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS24465 PF00931 NB-ARC domain D3U04_RS24465 PF03704 Bacterial transcriptional activator domain D3U04_RS24470 PF00107 Zinc-binding dehydrogenase D3U04_RS24470 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS24475 PF00753 Metallo-beta-lactamase superfamily D3U04_RS24485 PF05175 Methyltransferase small domain D3U04_RS24485 PF17827 PrmC N-terminal domain D3U04_RS24500 PF04107 Glutamate-cysteine ligase family 2(GCS2) D3U04_RS24505 PF06628 Catalase-related immune-responsive D3U04_RS24505 PF00199 Catalase D3U04_RS24515 PF01037 Lrp/AsnC ligand binding domain D3U04_RS24520 PF00227 Proteasome subunit D3U04_RS24530 PF02983 Alpha-lytic protease prodomain D3U04_RS24530 PF00089 Trypsin D3U04_RS24580 PF01039 Carboxyl transferase domain D3U04_RS24590 PF03055 Retinal pigment epithelial membrane protein D3U04_RS24625 PF01613 Flavin reductase like domain D3U04_RS24630 PF00067 Cytochrome P450 D3U04_RS24635 PF12833 Helix-turn-helix domain D3U04_RS24635 PF02311 AraC-like ligand binding domain D3U04_RS24650 PF08608 Wyosine base formation D3U04_RS24650 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain D3U04_RS24655 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS24665 PF00732 GMC oxidoreductase D3U04_RS24665 PF05199 GMC oxidoreductase D3U04_RS24675 PF13667 ThiC-associated domain D3U04_RS24675 PF01964 Radical SAM ThiC family D3U04_RS24680 PF00293 NUDIX domain D3U04_RS24685 PF01066 CDP-alcohol phosphatidyltransferase D3U04_RS24690 PF00483 Nucleotidyl transferase D3U04_RS24695 PF04542 Sigma-70 region 2 D3U04_RS24695 PF08281 Sigma-70, region 4 D3U04_RS24705 PF13181 Tetratricopeptide repeat D3U04_RS24715 PF00544 Pectate lyase D3U04_RS24725 PF00498 FHA domain D3U04_RS24730 PF00376 MerR family regulatory protein D3U04_RS24735 PF02577 Bifunctional nuclease D3U04_RS24750 PF02347 Glycine cleavage system P-protein D3U04_RS24785 PF07690 Major Facilitator Superfamily D3U04_RS24795 PF13344 Haloacid dehalogenase-like hydrolase D3U04_RS24795 PF00293 NUDIX domain D3U04_RS24800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D3U04_RS24800 PF01568 Molydopterin dinucleotide binding domain D3U04_RS24800 PF00384 Molybdopterin oxidoreductase D3U04_RS24805 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3U04_RS24805 PF04324 BFD-like [2Fe-2S] binding domain D3U04_RS24805 PF18267 Rubredoxin NAD+ reductase C-terminal domain D3U04_RS24805 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS24805 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3U04_RS24810 PF04324 BFD-like [2Fe-2S] binding domain D3U04_RS24810 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS24810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3U04_RS24810 PF18267 Rubredoxin NAD+ reductase C-terminal domain D3U04_RS24810 PF13806 Rieske-like [2Fe-2S] domain D3U04_RS24810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3U04_RS24830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D3U04_RS24830 PF18029 Glyoxalase-like domain D3U04_RS24835 PF00005 ABC transporter D3U04_RS24835 PF13732 Domain of unknown function (DUF4162) D3U04_RS24840 PF01061 ABC-2 type transporter D3U04_RS24845 PF04539 Sigma-70 region 3 D3U04_RS24845 PF04545 Sigma-70, region 4 D3U04_RS24845 PF00140 Sigma-70 factor, region 1.2 D3U04_RS24845 PF04542 Sigma-70 region 2 D3U04_RS24850 PF08361 MAATS-type transcriptional repressor, C-terminal region D3U04_RS24850 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS24855 PF00501 AMP-binding enzyme D3U04_RS24855 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS24860 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS24865 PF18374 Enolase N-terminal domain-like D3U04_RS24865 PF13378 Enolase C-terminal domain-like D3U04_RS24870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3U04_RS24870 PF16582 Middle domain of thiamine pyrophosphate D3U04_RS24875 PF13350 Tyrosine phosphatase family D3U04_RS24910 PF04542 Sigma-70 region 2 D3U04_RS24910 PF08281 Sigma-70, region 4 D3U04_RS24915 PF03795 YCII-related domain D3U04_RS24925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3U04_RS24925 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3U04_RS24930 PF08279 HTH domain D3U04_RS24930 PF13280 WYL domain D3U04_RS24935 PF00425 chorismate binding enzyme D3U04_RS24955 PF03704 Bacterial transcriptional activator domain D3U04_RS24955 PF00931 NB-ARC domain D3U04_RS24955 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS24960 PF13180 PDZ domain D3U04_RS24965 PF04055 Radical SAM superfamily D3U04_RS24970 PF02638 Glycosyl hydrolase-like 10 D3U04_RS24995 PF00892 EamA-like transporter family D3U04_RS25010 PF00294 pfkB family carbohydrate kinase D3U04_RS25015 PF04227 Indigoidine synthase A like protein D3U04_RS25030 PF13411 MerR HTH family regulatory protein D3U04_RS25035 PF13460 NAD(P)H-binding D3U04_RS25035 PF11066 Protein of unknown function (DUF2867) D3U04_RS25040 PF00005 ABC transporter D3U04_RS25040 PF17760 UvrA interaction domain D3U04_RS25040 PF17755 UvrA DNA-binding domain D3U04_RS25045 PF00072 Response regulator receiver domain D3U04_RS25045 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS25050 PF07730 Histidine kinase D3U04_RS25055 PF07690 Major Facilitator Superfamily D3U04_RS25065 PF00664 ABC transporter transmembrane region D3U04_RS25065 PF04954 Siderophore-interacting protein D3U04_RS25065 PF08021 Siderophore-interacting FAD-binding domain D3U04_RS25065 PF00005 ABC transporter D3U04_RS25070 PF00005 ABC transporter D3U04_RS25085 PF01022 Bacterial regulatory protein, arsR family D3U04_RS25115 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS25115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS25115 PF00672 HAMP domain D3U04_RS25120 PF00072 Response regulator receiver domain D3U04_RS25120 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS25140 PF13732 Domain of unknown function (DUF4162) D3U04_RS25140 PF00005 ABC transporter D3U04_RS25145 PF01061 ABC-2 type transporter D3U04_RS25150 PF08281 Sigma-70, region 4 D3U04_RS25150 PF04542 Sigma-70 region 2 D3U04_RS25160 PF01494 FAD binding domain D3U04_RS25210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS25210 PF03466 LysR substrate binding domain D3U04_RS25215 PF07969 Amidohydrolase family D3U04_RS25250 PF00805 Pentapeptide repeats (8 copies) D3U04_RS25260 PF00501 AMP-binding enzyme D3U04_RS25260 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS25270 PF02899 Phage integrase, N-terminal SAM-like domain D3U04_RS25270 PF00589 Phage integrase family D3U04_RS25280 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS25285 PF13732 Domain of unknown function (DUF4162) D3U04_RS25285 PF00005 ABC transporter D3U04_RS25295 PF00962 Adenosine/AMP deaminase D3U04_RS25320 PF03364 Polyketide cyclase / dehydrase and lipid transport D3U04_RS25325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS25325 PF03466 LysR substrate binding domain D3U04_RS25335 PF13344 Haloacid dehalogenase-like hydrolase D3U04_RS25345 PF02899 Phage integrase, N-terminal SAM-like domain D3U04_RS25345 PF00589 Phage integrase family D3U04_RS25355 PF00589 Phage integrase family D3U04_RS25355 PF02899 Phage integrase, N-terminal SAM-like domain D3U04_RS25405 PF01882 Protein of unknown function DUF58 D3U04_RS25410 PF13519 von Willebrand factor type A domain D3U04_RS25415 PF05175 Methyltransferase small domain D3U04_RS25420 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3U04_RS25420 PF00588 SpoU rRNA Methylase family D3U04_RS25435 PF00107 Zinc-binding dehydrogenase D3U04_RS25435 PF13823 Alcohol dehydrogenase GroES-associated D3U04_RS25435 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS25450 PF04542 Sigma-70 region 2 D3U04_RS25450 PF08281 Sigma-70, region 4 D3U04_RS25475 PF00266 Aminotransferase class-V D3U04_RS25485 PF03301 Tryptophan 2,3-dioxygenase D3U04_RS25490 PF01300 Telomere recombination D3U04_RS25495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS25495 PF00672 HAMP domain D3U04_RS25495 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS25505 PF00574 Clp protease D3U04_RS25510 PF00574 Clp protease D3U04_RS25515 PF13397 RNA polymerase-binding protein D3U04_RS25535 PF04186 FxsA cytoplasmic membrane protein D3U04_RS25540 PF00535 Glycosyl transferase family 2 D3U04_RS25545 PF00535 Glycosyl transferase family 2 D3U04_RS25545 PF00795 Carbon-nitrogen hydrolase D3U04_RS25550 PF03061 Thioesterase superfamily D3U04_RS25555 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase D3U04_RS25555 PF02310 B12 binding domain D3U04_RS25560 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit D3U04_RS25565 PF00128 Alpha amylase, catalytic domain D3U04_RS25565 PF16657 Maltogenic Amylase, C-terminal domain D3U04_RS25570 PF00296 Luciferase-like monooxygenase D3U04_RS25575 PF00689 Cation transporting ATPase, C-terminus D3U04_RS25590 PF00474 Sodium:solute symporter family D3U04_RS25605 PF04055 Radical SAM superfamily D3U04_RS25605 PF12544 Lysine-2,3-aminomutase D3U04_RS25615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS25615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS25615 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS25630 PF03006 Haemolysin-III related D3U04_RS25635 PF00296 Luciferase-like monooxygenase D3U04_RS25640 PF01037 Lrp/AsnC ligand binding domain D3U04_RS25645 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS25650 PF00005 ABC transporter D3U04_RS25650 PF17912 MalK OB fold domain D3U04_RS25655 PF01741 Large-conductance mechanosensitive channel, MscL D3U04_RS25685 PF02293 AmiS/UreI family transporter D3U04_RS25690 PF03069 Acetamidase/Formamidase family D3U04_RS25695 PF00107 Zinc-binding dehydrogenase D3U04_RS25695 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS25700 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS25705 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS25710 PF01547 Bacterial extracellular solute-binding protein D3U04_RS25715 PF00005 ABC transporter D3U04_RS25715 PF17912 MalK OB fold domain D3U04_RS25720 PF00557 Metallopeptidase family M24 D3U04_RS25720 PF01321 Creatinase/Prolidase N-terminal domain D3U04_RS25725 PF01367 5'-3' exonuclease, C-terminal SAM fold D3U04_RS25725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3U04_RS25740 PF00271 Helicase conserved C-terminal domain D3U04_RS25740 PF00270 DEAD/DEAH box helicase D3U04_RS25740 PF08148 DSHCT (NUC185) domain D3U04_RS25745 PF00902 Sec-independent protein translocase protein (TatC) D3U04_RS25750 PF02416 mttA/Hcf106 family D3U04_RS25760 PF13280 WYL domain D3U04_RS25765 PF13280 WYL domain D3U04_RS25790 PF03136 Pup-ligase protein D3U04_RS25795 PF00227 Proteasome subunit D3U04_RS25800 PF00227 Proteasome subunit D3U04_RS25810 PF05639 Pup-like protein D3U04_RS25815 PF03136 Pup-ligase protein D3U04_RS25820 PF16450 Proteasomal ATPase OB C-terminal domain D3U04_RS25820 PF17758 Proteasomal ATPase OB N-terminal domain D3U04_RS25820 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS25825 PF08704 tRNA methyltransferase complex GCD14 subunit D3U04_RS25830 PF00571 CBS domain D3U04_RS25830 PF02163 Peptidase family M50 D3U04_RS25840 PF07730 Histidine kinase D3U04_RS25845 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS25845 PF00072 Response regulator receiver domain D3U04_RS25850 PF00005 ABC transporter D3U04_RS25855 PF02687 FtsX-like permease family D3U04_RS25855 PF12704 MacB-like periplasmic core domain D3U04_RS25855 PF00005 ABC transporter D3U04_RS25865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3U04_RS25865 PF00005 ABC transporter D3U04_RS25870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D3U04_RS25870 PF00005 ABC transporter D3U04_RS25875 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS25880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3U04_RS25885 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS25885 PF12911 N-terminal TM domain of oligopeptide transport permease C D3U04_RS25900 PF02607 B12 binding domain D3U04_RS25900 PF02965 Vitamin B12 dependent methionine synthase, activation domain D3U04_RS25900 PF02310 B12 binding domain D3U04_RS25900 PF02574 Homocysteine S-methyltransferase D3U04_RS25900 PF00809 Pterin binding enzyme D3U04_RS25905 PF00582 Universal stress protein family D3U04_RS25915 PF00588 SpoU rRNA Methylase family D3U04_RS25920 PF01406 tRNA synthetases class I (C) catalytic domain D3U04_RS25945 PF01544 CorA-like Mg2+ transporter protein D3U04_RS25950 PF00248 Aldo/keto reductase family D3U04_RS25985 PF07311 Dodecin D3U04_RS26010 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3U04_RS26010 PF00476 DNA polymerase family A D3U04_RS26010 PF01367 5'-3' exonuclease, C-terminal SAM fold D3U04_RS26030 PF06463 Molybdenum Cofactor Synthesis C D3U04_RS26030 PF04055 Radical SAM superfamily D3U04_RS26035 PF12146 Serine aminopeptidase, S33 D3U04_RS26045 PF01139 tRNA-splicing ligase RtcB D3U04_RS26050 PF09107 Elongation factor SelB, winged helix D3U04_RS26050 PF09105 Elongation factor SelB, winged helix D3U04_RS26050 PF09106 Elongation factor SelB, winged helix D3U04_RS26050 PF00009 Elongation factor Tu GTP binding domain D3U04_RS26050 PF03144 Elongation factor Tu domain 2 D3U04_RS26055 PF12390 Selenocysteine synthase N terminal D3U04_RS26055 PF03841 L-seryl-tRNA selenium transferase D3U04_RS26065 PF00501 AMP-binding enzyme D3U04_RS26065 PF16177 Acetyl-coenzyme A synthetase N-terminus D3U04_RS26065 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS26070 PF04226 Transglycosylase associated protein D3U04_RS26080 PF00501 AMP-binding enzyme D3U04_RS26110 PF01370 NAD dependent epimerase/dehydratase family D3U04_RS26115 PF01467 Cytidylyltransferase-like D3U04_RS26115 PF00294 pfkB family carbohydrate kinase D3U04_RS26120 PF13580 SIS domain D3U04_RS26125 PF00534 Glycosyl transferases group 1 D3U04_RS26125 PF13439 Glycosyltransferase Family 4 D3U04_RS26130 PF16861 Carbamoyltransferase C-terminus D3U04_RS26130 PF02543 Carbamoyltransferase N-terminus D3U04_RS26150 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D3U04_RS26165 PF03358 NADPH-dependent FMN reductase D3U04_RS26165 PF01566 Natural resistance-associated macrophage protein D3U04_RS26170 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS26170 PF00107 Zinc-binding dehydrogenase D3U04_RS26170 PF13823 Alcohol dehydrogenase GroES-associated D3U04_RS26185 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS26185 PF00072 Response regulator receiver domain D3U04_RS26190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS26190 PF00672 HAMP domain D3U04_RS26190 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS26205 PF02634 FdhD/NarQ family D3U04_RS26215 PF00561 alpha/beta hydrolase fold D3U04_RS26230 PF00571 CBS domain D3U04_RS26235 PF00083 Sugar (and other) transporter D3U04_RS26240 PF02595 Glycerate kinase family D3U04_RS26250 PF02146 Sir2 family D3U04_RS26265 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS26275 PF12848 ABC transporter D3U04_RS26275 PF00005 ABC transporter D3U04_RS26310 PF00072 Response regulator receiver domain D3U04_RS26310 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS26315 PF07730 Histidine kinase D3U04_RS26315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS26315 PF00672 HAMP domain D3U04_RS26325 PF01883 Iron-sulfur cluster assembly protein D3U04_RS26330 PF01592 NifU-like N terminal domain D3U04_RS26335 PF00266 Aminotransferase class-V D3U04_RS26340 PF00005 ABC transporter D3U04_RS26345 PF00355 Rieske [2Fe-2S] domain D3U04_RS26350 PF01458 Uncharacterized protein family (UPF0051) D3U04_RS26355 PF01458 Uncharacterized protein family (UPF0051) D3U04_RS26365 PF00582 Universal stress protein family D3U04_RS26370 PF13520 Amino acid permease D3U04_RS26375 PF00005 ABC transporter D3U04_RS26385 PF00892 EamA-like transporter family D3U04_RS26390 PF02811 PHP domain D3U04_RS26390 PF14791 DNA polymerase beta thumb D3U04_RS26390 PF14716 Helix-hairpin-helix domain D3U04_RS26405 PF01040 UbiA prenyltransferase family D3U04_RS26410 PF02780 Transketolase, C-terminal domain D3U04_RS26410 PF00456 Transketolase, thiamine diphosphate binding domain D3U04_RS26410 PF02779 Transketolase, pyrimidine binding domain D3U04_RS26415 PF00923 Transaldolase/Fructose-6-phosphate aldolase D3U04_RS26420 PF00342 Phosphoglucose isomerase D3U04_RS26430 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D3U04_RS26430 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D3U04_RS26440 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D3U04_RS26445 PF07228 Stage II sporulation protein E (SpoIIE) D3U04_RS26445 PF08448 PAS fold D3U04_RS26445 PF13581 Histidine kinase-like ATPase domain D3U04_RS26445 PF13466 STAS domain D3U04_RS26450 PF09308 LuxQ, periplasmic D3U04_RS26450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS26450 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS26450 PF00072 Response regulator receiver domain D3U04_RS26460 PF13581 Histidine kinase-like ATPase domain D3U04_RS26465 PF01740 STAS domain D3U04_RS26470 PF01740 STAS domain D3U04_RS26470 PF08678 Rsbr N terminal D3U04_RS26475 PF13302 Acetyltransferase (GNAT) domain D3U04_RS26475 PF00027 Cyclic nucleotide-binding domain D3U04_RS26485 PF07228 Stage II sporulation protein E (SpoIIE) D3U04_RS26485 PF13466 STAS domain D3U04_RS26485 PF13581 Histidine kinase-like ATPase domain D3U04_RS26485 PF08448 PAS fold D3U04_RS26490 PF00464 Serine hydroxymethyltransferase D3U04_RS26515 PF03840 Preprotein translocase SecG subunit D3U04_RS26520 PF00121 Triosephosphate isomerase D3U04_RS26525 PF00162 Phosphoglycerate kinase D3U04_RS26530 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D3U04_RS26530 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D3U04_RS26535 PF10298 WhiA N-terminal LAGLIDADG-like domain D3U04_RS26535 PF02650 WhiA C-terminal HTH domain D3U04_RS26535 PF14527 WhiA LAGLIDADG-like domain D3U04_RS26540 PF01933 Uncharacterised protein family UPF0052 D3U04_RS26545 PF03668 P-loop ATPase protein family D3U04_RS26550 PF08459 UvrC Helix-hairpin-helix N-terminal D3U04_RS26550 PF01541 GIY-YIG catalytic domain D3U04_RS26550 PF02151 UvrB/uvrC motif D3U04_RS26570 PF17760 UvrA interaction domain D3U04_RS26570 PF17755 UvrA DNA-binding domain D3U04_RS26570 PF00005 ABC transporter D3U04_RS26610 PF00570 HRDC domain D3U04_RS26610 PF00271 Helicase conserved C-terminal domain D3U04_RS26610 PF00270 DEAD/DEAH box helicase D3U04_RS26610 PF16124 RecQ zinc-binding D3U04_RS26610 PF09382 RQC domain D3U04_RS26615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3U04_RS26615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3U04_RS26620 PF01261 Xylose isomerase-like TIM barrel D3U04_RS26630 PF01915 Glycosyl hydrolase family 3 C-terminal domain D3U04_RS26630 PF14310 Fibronectin type III-like domain D3U04_RS26630 PF00933 Glycosyl hydrolase family 3 N terminal domain D3U04_RS26635 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS26640 PF07690 Major Facilitator Superfamily D3U04_RS26645 PF00232 Glycosyl hydrolase family 1 D3U04_RS26650 PF13802 Galactose mutarotase-like D3U04_RS26650 PF01055 Glycosyl hydrolases family 31 D3U04_RS26655 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS26660 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS26665 PF01547 Bacterial extracellular solute-binding protein D3U04_RS26670 PF00672 HAMP domain D3U04_RS26670 PF00211 Adenylate and Guanylate cyclase catalytic domain D3U04_RS26680 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS26685 PF01638 HxlR-like helix-turn-helix D3U04_RS26715 PF00534 Glycosyl transferases group 1 D3U04_RS26715 PF13579 Glycosyl transferase 4-like domain D3U04_RS26730 PF11382 Copper transport outer membrane protein, MctB D3U04_RS26740 PF02463 RecF/RecN/SMC N terminal domain D3U04_RS26745 PF01513 ATP-NAD kinase D3U04_RS26750 PF01479 S4 domain D3U04_RS26750 PF01728 FtsJ-like methyltransferase D3U04_RS26765 PF03009 Glycerophosphoryl diester phosphodiesterase family D3U04_RS26770 PF18407 GCN5-related N-acetyltransferase like domain D3U04_RS26770 PF13344 Haloacid dehalogenase-like hydrolase D3U04_RS26785 PF00753 Metallo-beta-lactamase superfamily D3U04_RS26815 PF00579 tRNA synthetases class I (W and Y) D3U04_RS26820 PF02245 Methylpurine-DNA glycosylase (MPG) D3U04_RS26825 PF00206 Lyase D3U04_RS26825 PF14698 Argininosuccinate lyase C-terminal D3U04_RS26830 PF00764 Arginosuccinate synthase D3U04_RS26835 PF01316 Arginine repressor, DNA binding domain D3U04_RS26835 PF02863 Arginine repressor, C-terminal domain D3U04_RS26840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D3U04_RS26840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D3U04_RS26845 PF00202 Aminotransferase class-III D3U04_RS26850 PF00696 Amino acid kinase family D3U04_RS26855 PF01960 ArgJ family D3U04_RS26860 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3U04_RS26860 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3U04_RS26875 PF00005 ABC transporter D3U04_RS26880 PF01588 Putative tRNA binding domain D3U04_RS26880 PF03483 B3/4 domain D3U04_RS26880 PF03147 Ferredoxin-fold anticodon binding domain D3U04_RS26880 PF03484 tRNA synthetase B5 domain D3U04_RS26880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D3U04_RS26885 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D3U04_RS26885 PF01409 tRNA synthetases class II core domain (F) D3U04_RS26890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS26890 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS26890 PF16736 Single Cache-like D3U04_RS26890 PF00989 PAS fold D3U04_RS26900 PF00588 SpoU rRNA Methylase family D3U04_RS26900 PF08032 RNA 2'-O ribose methyltransferase substrate binding D3U04_RS26905 PF00453 Ribosomal protein L20 D3U04_RS26910 PF01632 Ribosomal protein L35 D3U04_RS26915 PF00707 Translation initiation factor IF-3, C-terminal domain D3U04_RS26915 PF05198 Translation initiation factor IF-3, N-terminal domain D3U04_RS26930 PF08501 Shikimate dehydrogenase substrate binding domain D3U04_RS26930 PF01488 Shikimate / quinate 5-dehydrogenase D3U04_RS26930 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D3U04_RS26940 PF03652 Holliday junction resolvase D3U04_RS26945 PF02272 DHHA1 domain D3U04_RS26945 PF01411 tRNA synthetases class II (A) D3U04_RS26945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3U04_RS26960 PF12002 MgsA AAA+ ATPase C terminal D3U04_RS26960 PF16193 AAA C-terminal domain D3U04_RS26960 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS26980 PF02938 GAD domain D3U04_RS26980 PF01336 OB-fold nucleic acid binding domain D3U04_RS26980 PF00152 tRNA synthetases class II (D, K and N) D3U04_RS26985 PF13393 Histidyl-tRNA synthetase D3U04_RS26985 PF03129 Anticodon binding domain D3U04_RS26990 PF00753 Metallo-beta-lactamase superfamily D3U04_RS26995 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D3U04_RS27000 PF03993 Domain of Unknown Function (DUF349) D3U04_RS27010 PF02824 TGS domain D3U04_RS27010 PF04607 Region found in RelA / SpoT proteins D3U04_RS27010 PF13291 ACT domain D3U04_RS27015 PF00156 Phosphoribosyl transferase domain D3U04_RS27020 PF02355 Protein export membrane protein D3U04_RS27020 PF07549 SecD/SecF GG Motif D3U04_RS27025 PF02355 Protein export membrane protein D3U04_RS27025 PF07549 SecD/SecF GG Motif D3U04_RS27030 PF02699 Preprotein translocase subunit D3U04_RS27035 PF05496 Holliday junction DNA helicase RuvB P-loop domain D3U04_RS27035 PF05491 RuvB C-terminal winged helix domain D3U04_RS27035 PF17864 RuvB AAA lid domain D3U04_RS27040 PF01330 RuvA N terminal domain D3U04_RS27040 PF07499 RuvA, C-terminal domain D3U04_RS27045 PF02075 Crossover junction endodeoxyribonuclease RuvC D3U04_RS27050 PF01709 Transcriptional regulator D3U04_RS27055 PF01174 SNO glutamine amidotransferase family D3U04_RS27065 PF01680 SOR/SNZ family D3U04_RS27080 PF13439 Glycosyltransferase Family 4 D3U04_RS27085 PF03279 Bacterial lipid A biosynthesis acyltransferase D3U04_RS27090 PF01066 CDP-alcohol phosphatidyltransferase D3U04_RS27095 PF03144 Elongation factor Tu domain 2 D3U04_RS27095 PF00009 Elongation factor Tu GTP binding domain D3U04_RS27095 PF03764 Elongation factor G, domain IV D3U04_RS27095 PF14492 Elongation Factor G, domain II D3U04_RS27095 PF00679 Elongation factor G C-terminus D3U04_RS27100 PF01230 HIT domain D3U04_RS27105 PF03780 Asp23 family, cell envelope-related function D3U04_RS27120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D3U04_RS27120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D3U04_RS27120 PF03129 Anticodon binding domain D3U04_RS27125 PF00083 Sugar (and other) transporter D3U04_RS27130 PF07730 Histidine kinase D3U04_RS27135 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS27135 PF00072 Response regulator receiver domain D3U04_RS27140 PF07085 DRTGG domain D3U04_RS27140 PF01515 Phosphate acetyl/butaryl transferase D3U04_RS27145 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS27145 PF00107 Zinc-binding dehydrogenase D3U04_RS27155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS27155 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS27155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS27165 PF00501 AMP-binding enzyme D3U04_RS27165 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS27170 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3U04_RS27170 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3U04_RS27190 PF01022 Bacterial regulatory protein, arsR family D3U04_RS27195 PF00501 AMP-binding enzyme D3U04_RS27230 PF00005 ABC transporter D3U04_RS27255 PF01323 DSBA-like thioredoxin domain D3U04_RS27265 PF00963 Cohesin domain D3U04_RS27265 PF01522 Polysaccharide deacetylase D3U04_RS27270 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS27300 PF00589 Phage integrase family D3U04_RS27345 PF00698 Acyl transferase domain D3U04_RS27345 PF14765 Polyketide synthase dehydratase D3U04_RS27345 PF00550 Phosphopantetheine attachment site D3U04_RS27345 PF08659 KR domain D3U04_RS27345 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS27345 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS27345 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS27345 PF09277 Erythronolide synthase, docking D3U04_RS27345 PF08990 Erythronolide synthase docking D3U04_RS27345 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS27365 PF00348 Polyprenyl synthetase D3U04_RS27375 PF09339 IclR helix-turn-helix domain D3U04_RS27375 PF01614 Bacterial transcriptional regulator D3U04_RS27425 PF01740 STAS domain D3U04_RS27440 PF04686 Streptomyces sporulation and cell division protein, SsgA D3U04_RS27445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D3U04_RS27445 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS27460 PF00893 Small Multidrug Resistance protein D3U04_RS27465 PF01063 Amino-transferase class IV D3U04_RS27470 PF04715 Anthranilate synthase component I, N terminal region D3U04_RS27470 PF00425 chorismate binding enzyme D3U04_RS27490 PF04616 Glycosyl hydrolases family 43 D3U04_RS27500 PF06441 Epoxide hydrolase N terminus D3U04_RS27505 PF13280 WYL domain D3U04_RS27505 PF08279 HTH domain D3U04_RS27510 PF07690 Major Facilitator Superfamily D3U04_RS27545 PF02146 Sir2 family D3U04_RS27560 PF00557 Metallopeptidase family M24 D3U04_RS27580 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS27580 PF00107 Zinc-binding dehydrogenase D3U04_RS27585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D3U04_RS27585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D3U04_RS27590 PF00535 Glycosyl transferase family 2 D3U04_RS27615 PF00491 Arginase family D3U04_RS27660 PF02868 Thermolysin metallopeptidase, alpha-helical domain D3U04_RS27660 PF04389 Peptidase family M28 D3U04_RS27660 PF01447 Thermolysin metallopeptidase, catalytic domain D3U04_RS27665 PF01483 Proprotein convertase P-domain D3U04_RS27665 PF04389 Peptidase family M28 D3U04_RS27680 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS27690 PF00106 short chain dehydrogenase D3U04_RS27730 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS27730 PF00107 Zinc-binding dehydrogenase D3U04_RS27755 PF00459 Inositol monophosphatase family D3U04_RS27775 PF00474 Sodium:solute symporter family D3U04_RS27785 PF00400 WD domain, G-beta repeat D3U04_RS27785 PF00069 Protein kinase domain D3U04_RS27790 PF02541 Ppx/GppA phosphatase family D3U04_RS27800 PF00294 pfkB family carbohydrate kinase D3U04_RS27805 PF07690 Major Facilitator Superfamily D3U04_RS27825 PF01638 HxlR-like helix-turn-helix D3U04_RS27830 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS27845 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS27845 PF00155 Aminotransferase class I and II D3U04_RS27865 PF00596 Class II Aldolase and Adducin N-terminal domain D3U04_RS27875 PF05336 L-rhamnose mutarotase D3U04_RS27880 PF13407 Periplasmic binding protein domain D3U04_RS27885 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS27890 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS27895 PF00005 ABC transporter D3U04_RS27900 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS27905 PF02754 Cysteine-rich domain D3U04_RS27910 PF11870 Domain of unknown function (DUF3390) D3U04_RS27910 PF13183 4Fe-4S dicluster domain D3U04_RS27910 PF02589 LUD domain D3U04_RS27915 PF02589 LUD domain D3U04_RS27920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D3U04_RS27920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D3U04_RS27925 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS27935 PF05199 GMC oxidoreductase D3U04_RS27950 PF04542 Sigma-70 region 2 D3U04_RS27950 PF04545 Sigma-70, region 4 D3U04_RS27960 PF01243 Pyridoxamine 5'-phosphate oxidase D3U04_RS27965 PF08482 ATP-dependent helicase C-terminal D3U04_RS27965 PF00271 Helicase conserved C-terminal domain D3U04_RS27965 PF04408 Helicase associated domain (HA2) D3U04_RS27965 PF00270 DEAD/DEAH box helicase D3U04_RS27985 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS27985 PF13456 Reverse transcriptase-like D3U04_RS27990 PF02954 Bacterial regulatory protein, Fis family D3U04_RS28020 PF01212 Beta-eliminating lyase D3U04_RS28030 PF13305 Tetracyclin repressor-like, C-terminal domain D3U04_RS28030 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS28065 PF07883 Cupin domain D3U04_RS28075 PF08281 Sigma-70, region 4 D3U04_RS28075 PF04542 Sigma-70 region 2 D3U04_RS28100 PF01039 Carboxyl transferase domain D3U04_RS28105 PF00364 Biotin-requiring enzyme D3U04_RS28105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D3U04_RS28105 PF00289 Biotin carboxylase, N-terminal domain D3U04_RS28105 PF02785 Biotin carboxylase C-terminal domain D3U04_RS28110 PF00682 HMGL-like D3U04_RS28115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS28115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS28115 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS28125 PF07690 Major Facilitator Superfamily D3U04_RS28130 PF00596 Class II Aldolase and Adducin N-terminal domain D3U04_RS28130 PF01008 Initiation factor 2 subunit family D3U04_RS28145 PF00982 Glycosyltransferase family 20 D3U04_RS28155 PF01565 FAD binding domain D3U04_RS28155 PF09265 Cytokinin dehydrogenase 1, FAD and cytokinin binding D3U04_RS28160 PF00072 Response regulator receiver domain D3U04_RS28160 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS28165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS28165 PF07730 Histidine kinase D3U04_RS28170 PF09335 SNARE associated Golgi protein D3U04_RS28180 PF00672 HAMP domain D3U04_RS28180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS28180 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS28185 PF00072 Response regulator receiver domain D3U04_RS28185 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS28190 PF13180 PDZ domain D3U04_RS28190 PF17820 PDZ domain D3U04_RS28195 PF13519 von Willebrand factor type A domain D3U04_RS28200 PF01882 Protein of unknown function DUF58 D3U04_RS28205 PF17863 AAA lid domain D3U04_RS28205 PF07726 ATPase family associated with various cellular activities (AAA) D3U04_RS28215 PF00285 Citrate synthase, C-terminal domain D3U04_RS28220 PF00296 Luciferase-like monooxygenase D3U04_RS28230 PF00501 AMP-binding enzyme D3U04_RS28230 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS28240 PF00171 Aldehyde dehydrogenase family D3U04_RS28250 PF02566 OsmC-like protein D3U04_RS28270 PF03733 Inner membrane component domain D3U04_RS28280 PF13411 MerR HTH family regulatory protein D3U04_RS28285 PF00135 Carboxylesterase family D3U04_RS28290 PF00075 RNase H D3U04_RS28325 PF00689 Cation transporting ATPase, C-terminus D3U04_RS28330 PF01047 MarR family D3U04_RS28330 PF00480 ROK family D3U04_RS28375 PF08281 Sigma-70, region 4 D3U04_RS28375 PF04542 Sigma-70 region 2 D3U04_RS28400 PF00753 Metallo-beta-lactamase superfamily D3U04_RS28410 PF00484 Carbonic anhydrase D3U04_RS28430 PF00069 Protein kinase domain D3U04_RS28430 PF00400 WD domain, G-beta repeat D3U04_RS28455 PF13476 AAA domain D3U04_RS28460 PF12320 Type 5 capsule protein repressor C-terminal domain D3U04_RS28460 PF00149 Calcineurin-like phosphoesterase D3U04_RS28480 PF00400 WD domain, G-beta repeat D3U04_RS28480 PF00069 Protein kinase domain D3U04_RS28490 PF01638 HxlR-like helix-turn-helix D3U04_RS28530 PF02585 GlcNAc-PI de-N-acetylase D3U04_RS28555 PF11583 P-aminobenzoate N-oxygenase AurF D3U04_RS28570 PF00023 Ankyrin repeat D3U04_RS28570 PF12796 Ankyrin repeats (3 copies) D3U04_RS28575 PF07690 Major Facilitator Superfamily D3U04_RS28580 PF00924 Mechanosensitive ion channel D3U04_RS28590 PF03594 Benzoate membrane transport protein D3U04_RS28605 PF00534 Glycosyl transferases group 1 D3U04_RS28610 PF13191 AAA ATPase domain D3U04_RS28610 PF00211 Adenylate and Guanylate cyclase catalytic domain D3U04_RS28615 PF00975 Thioesterase domain D3U04_RS28620 PF00005 ABC transporter D3U04_RS28620 PF12704 MacB-like periplasmic core domain D3U04_RS28620 PF02687 FtsX-like permease family D3U04_RS28625 PF00005 ABC transporter D3U04_RS28640 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS28640 PF00072 Response regulator receiver domain D3U04_RS28655 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS28655 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS28655 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS28670 PF00596 Class II Aldolase and Adducin N-terminal domain D3U04_RS28685 PF00012 Hsp70 protein D3U04_RS28715 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS28715 PF08361 MAATS-type transcriptional repressor, C-terminal region D3U04_RS28720 PF02126 Phosphotriesterase family D3U04_RS28730 PF01037 Lrp/AsnC ligand binding domain D3U04_RS28740 PF01568 Molydopterin dinucleotide binding domain D3U04_RS28740 PF00384 Molybdopterin oxidoreductase D3U04_RS28745 PF08044 Domain of unknown function (DUF1707) D3U04_RS28755 PF00689 Cation transporting ATPase, C-terminus D3U04_RS28760 PF01039 Carboxyl transferase domain D3U04_RS28765 PF00108 Thiolase, N-terminal domain D3U04_RS28765 PF02803 Thiolase, C-terminal domain D3U04_RS28770 PF02515 CoA-transferase family III D3U04_RS28795 PF07728 AAA domain (dynein-related subfamily) D3U04_RS28805 PF05762 VWA domain containing CoxE-like protein D3U04_RS28810 PF00561 alpha/beta hydrolase fold D3U04_RS28815 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS28815 PF13305 Tetracyclin repressor-like, C-terminal domain D3U04_RS28830 PF01022 Bacterial regulatory protein, arsR family D3U04_RS28835 PF16916 Dimerisation domain of Zinc Transporter D3U04_RS28835 PF01545 Cation efflux family D3U04_RS28845 PF00781 Diacylglycerol kinase catalytic domain D3U04_RS28850 PF00743 Flavin-binding monooxygenase-like D3U04_RS28860 PF00166 Chaperonin 10 Kd subunit D3U04_RS28875 PF13476 AAA domain D3U04_RS28880 PF00149 Calcineurin-like phosphoesterase D3U04_RS28885 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D3U04_RS28885 PF01872 RibD C-terminal domain D3U04_RS28895 PF00171 Aldehyde dehydrogenase family D3U04_RS28900 PF00501 AMP-binding enzyme D3U04_RS28900 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS28900 PF16177 Acetyl-coenzyme A synthetase N-terminus D3U04_RS28910 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS28940 PF00069 Protein kinase domain D3U04_RS28950 PF00005 ABC transporter D3U04_RS28955 PF02653 Branched-chain amino acid transport system / permease component D3U04_RS28965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D3U04_RS28965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D3U04_RS28980 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS28980 PF05362 Lon protease (S16) C-terminal proteolytic domain D3U04_RS28980 PF02190 ATP-dependent protease La (LON) substrate-binding domain D3U04_RS28985 PF00583 Acetyltransferase (GNAT) family D3U04_RS28985 PF13508 Acetyltransferase (GNAT) domain D3U04_RS28990 PF12823 Domain of unknown function (DUF3817) D3U04_RS29000 PF13439 Glycosyltransferase Family 4 D3U04_RS29010 PF00534 Glycosyl transferases group 1 D3U04_RS29010 PF13439 Glycosyltransferase Family 4 D3U04_RS29030 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D3U04_RS29030 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D3U04_RS29045 PF00106 short chain dehydrogenase D3U04_RS29050 PF00255 Glutathione peroxidase D3U04_RS29060 PF03816 Cell envelope-related transcriptional attenuator domain D3U04_RS29065 PF00005 ABC transporter D3U04_RS29065 PF00664 ABC transporter transmembrane region D3U04_RS29070 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS29070 PF17866 AAA lid domain D3U04_RS29085 PF01740 STAS domain D3U04_RS29110 PF01119 DNA mismatch repair protein, C-terminal domain D3U04_RS29110 PF08676 MutL C terminal dimerisation domain D3U04_RS29120 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS29125 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS29130 PF00205 Thiamine pyrophosphate enzyme, central domain D3U04_RS29130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D3U04_RS29130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D3U04_RS29135 PF00005 ABC transporter D3U04_RS29140 PF00476 DNA polymerase family A D3U04_RS29140 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D3U04_RS29140 PF09281 Taq polymerase, exonuclease D3U04_RS29140 PF01367 5'-3' exonuclease, C-terminal SAM fold D3U04_RS29155 PF00781 Diacylglycerol kinase catalytic domain D3U04_RS29165 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS29170 PF01266 FAD dependent oxidoreductase D3U04_RS29170 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D3U04_RS29185 PF00156 Phosphoribosyl transferase domain D3U04_RS29185 PF01738 Dienelactone hydrolase family D3U04_RS29190 PF00156 Phosphoribosyl transferase domain D3U04_RS29190 PF01738 Dienelactone hydrolase family D3U04_RS29195 PF03193 RsgA GTPase D3U04_RS29210 PF01593 Flavin containing amine oxidoreductase D3U04_RS29225 PF01593 Flavin containing amine oxidoreductase D3U04_RS29240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D3U04_RS29240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D3U04_RS29250 PF01507 Phosphoadenosine phosphosulfate reductase family D3U04_RS29270 PF18158 Adaptive response protein AidB N-terminal domain D3U04_RS29270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS29270 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS29280 PF08361 MAATS-type transcriptional repressor, C-terminal region D3U04_RS29280 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS29300 PF00128 Alpha amylase, catalytic domain D3U04_RS29300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D3U04_RS29320 PF08281 Sigma-70, region 4 D3U04_RS29320 PF04542 Sigma-70 region 2 D3U04_RS29335 PF01068 ATP dependent DNA ligase domain D3U04_RS29335 PF04679 ATP dependent DNA ligase C terminal region D3U04_RS29340 PF16655 PhoD-like phosphatase, N-terminal domain D3U04_RS29340 PF09423 PhoD-like phosphatase D3U04_RS29355 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain D3U04_RS29355 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D3U04_RS29365 PF01641 SelR domain D3U04_RS29375 PF06778 Chlorite dismutase D3U04_RS29380 PF01593 Flavin containing amine oxidoreductase D3U04_RS29390 PF01208 Uroporphyrinogen decarboxylase (URO-D) D3U04_RS29415 PF00108 Thiolase, N-terminal domain D3U04_RS29415 PF02803 Thiolase, C-terminal domain D3U04_RS29420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D3U04_RS29420 PF00378 Enoyl-CoA hydratase/isomerase D3U04_RS29420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D3U04_RS29425 PF13520 Amino acid permease D3U04_RS29430 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS29435 PF02779 Transketolase, pyrimidine binding domain D3U04_RS29435 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D3U04_RS29435 PF02780 Transketolase, C-terminal domain D3U04_RS29440 PF00293 NUDIX domain D3U04_RS29475 PF03167 Uracil DNA glycosylase superfamily D3U04_RS29480 PF01061 ABC-2 type transporter D3U04_RS29485 PF00005 ABC transporter D3U04_RS29495 PF00330 Aconitase family (aconitate hydratase) D3U04_RS29495 PF00694 Aconitase C-terminal domain D3U04_RS29500 PF03551 Transcriptional regulator PadR-like family D3U04_RS29515 PF01209 ubiE/COQ5 methyltransferase family D3U04_RS29520 PF01081 KDPG and KHG aldolase D3U04_RS29525 PF02685 Glucokinase D3U04_RS29530 PF00920 Dehydratase family D3U04_RS29535 PF01047 MarR family D3U04_RS29535 PF00480 ROK family D3U04_RS29545 PF00686 Starch binding domain D3U04_RS29545 PF02806 Alpha amylase, C-terminal all-beta domain D3U04_RS29545 PF00128 Alpha amylase, catalytic domain D3U04_RS29550 PF01547 Bacterial extracellular solute-binding protein D3U04_RS29555 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS29560 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS29565 PF00128 Alpha amylase, catalytic domain D3U04_RS29570 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS29575 PF00553 Cellulose binding domain D3U04_RS29575 PF01341 Glycosyl hydrolases family 6 D3U04_RS29580 PF00005 ABC transporter D3U04_RS29580 PF17912 MalK OB fold domain D3U04_RS29590 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS29595 PF00528 Binding-protein-dependent transport system inner membrane component D3U04_RS29600 PF00232 Glycosyl hydrolase family 1 D3U04_RS29605 PF00356 Bacterial regulatory proteins, lacI family D3U04_RS29615 PF08281 Sigma-70, region 4 D3U04_RS29615 PF04542 Sigma-70 region 2 D3U04_RS29640 PF01810 LysE type translocator D3U04_RS29645 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS29645 PF00501 AMP-binding enzyme D3U04_RS29665 PF01810 LysE type translocator D3U04_RS29675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS29675 PF03466 LysR substrate binding domain D3U04_RS29680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D3U04_RS29680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D3U04_RS29680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D3U04_RS29680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D3U04_RS29685 PF00149 Calcineurin-like phosphoesterase D3U04_RS29700 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS29705 PF07690 Major Facilitator Superfamily D3U04_RS29735 PF05958 tRNA (Uracil-5-)-methyltransferase D3U04_RS29735 PF01938 TRAM domain D3U04_RS29740 PF13520 Amino acid permease D3U04_RS29745 PF02254 TrkA-N domain D3U04_RS29745 PF02080 TrkA-C domain D3U04_RS29750 PF02254 TrkA-N domain D3U04_RS29750 PF02080 TrkA-C domain D3U04_RS29770 PF03600 Citrate transporter D3U04_RS29790 PF00692 dUTPase D3U04_RS29810 PF07690 Major Facilitator Superfamily D3U04_RS29815 PF08264 Anticodon-binding domain of tRNA D3U04_RS29815 PF00133 tRNA synthetases class I (I, L, M and V) D3U04_RS29840 PF00400 WD domain, G-beta repeat D3U04_RS29840 PF00069 Protein kinase domain D3U04_RS29845 PF00400 WD domain, G-beta repeat D3U04_RS29845 PF00069 Protein kinase domain D3U04_RS29850 PF00672 HAMP domain D3U04_RS29850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D3U04_RS29850 PF00512 His Kinase A (phospho-acceptor) domain D3U04_RS29855 PF00072 Response regulator receiver domain D3U04_RS29855 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS29860 PF00459 Inositol monophosphatase family D3U04_RS29865 PF00762 Ferrochelatase D3U04_RS29875 PF01565 FAD binding domain D3U04_RS29875 PF04030 D-arabinono-1,4-lactone oxidase D3U04_RS29880 PF11268 Protein of unknown function (DUF3071) D3U04_RS29890 PF03703 Bacterial PH domain D3U04_RS29895 PF13732 Domain of unknown function (DUF4162) D3U04_RS29895 PF00005 ABC transporter D3U04_RS29900 PF01061 ABC-2 type transporter D3U04_RS29905 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS29910 PF01161 Phosphatidylethanolamine-binding protein D3U04_RS29925 PF00484 Carbonic anhydrase D3U04_RS29945 PF01784 NIF3 (NGG1p interacting factor 3) D3U04_RS29955 PF00300 Histidine phosphatase superfamily (branch 1) D3U04_RS29955 PF13456 Reverse transcriptase-like D3U04_RS29960 PF01810 LysE type translocator D3U04_RS29965 PF00291 Pyridoxal-phosphate dependent enzyme D3U04_RS30000 PF18416 N-acetylglucosamine binding protein domain 2 D3U04_RS30000 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading D3U04_RS30025 PF12697 Alpha/beta hydrolase family D3U04_RS30030 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS30030 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS30030 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS30030 PF08659 KR domain D3U04_RS30030 PF00550 Phosphopantetheine attachment site D3U04_RS30030 PF14765 Polyketide synthase dehydratase D3U04_RS30030 PF00698 Acyl transferase domain D3U04_RS30035 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS30035 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS30035 PF00550 Phosphopantetheine attachment site D3U04_RS30035 PF14765 Polyketide synthase dehydratase D3U04_RS30035 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS30035 PF00698 Acyl transferase domain D3U04_RS30035 PF08659 KR domain D3U04_RS30050 PF02824 TGS domain D3U04_RS30050 PF04607 Region found in RelA / SpoT proteins D3U04_RS30050 PF13291 ACT domain D3U04_RS30060 PF02566 OsmC-like protein D3U04_RS30070 PF17676 LD-carboxypeptidase C-terminal domain D3U04_RS30070 PF02016 LD-carboxypeptidase N-terminal domain D3U04_RS30125 PF07690 Major Facilitator Superfamily D3U04_RS30130 PF01451 Low molecular weight phosphotyrosine protein phosphatase D3U04_RS30140 PF07690 Major Facilitator Superfamily D3U04_RS30175 PF13426 PAS domain D3U04_RS30175 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS30190 PF17866 AAA lid domain D3U04_RS30190 PF00004 ATPase family associated with various cellular activities (AAA) D3U04_RS30195 PF00101 Ribulose bisphosphate carboxylase, small chain D3U04_RS30200 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D3U04_RS30200 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D3U04_RS30205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS30205 PF03466 LysR substrate binding domain D3U04_RS30210 PF03435 Saccharopine dehydrogenase NADP binding domain D3U04_RS30220 PF17200 Single Cache domain 2 D3U04_RS30220 PF07730 Histidine kinase D3U04_RS30225 PF00072 Response regulator receiver domain D3U04_RS30225 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS30230 PF00485 Phosphoribulokinase / Uridine kinase family D3U04_RS30265 PF00578 AhpC/TSA family D3U04_RS30270 PF11253 Protein of unknown function (DUF3052) D3U04_RS30275 PF01894 Uncharacterised protein family UPF0047 D3U04_RS30285 PF00456 Transketolase, thiamine diphosphate binding domain D3U04_RS30285 PF17831 Pyruvate dehydrogenase E1 component middle domain D3U04_RS30295 PF00561 alpha/beta hydrolase fold D3U04_RS30305 PF01425 Amidase D3U04_RS30310 PF02811 PHP domain D3U04_RS30310 PF14791 DNA polymerase beta thumb D3U04_RS30310 PF14716 Helix-hairpin-helix domain D3U04_RS30315 PF07730 Histidine kinase D3U04_RS30320 PF00072 Response regulator receiver domain D3U04_RS30320 PF00196 Bacterial regulatory proteins, luxR family D3U04_RS30335 PF17853 GGDEF-like domain D3U04_RS30335 PF13556 PucR C-terminal helix-turn-helix domain D3U04_RS30340 PF00698 Acyl transferase domain D3U04_RS30345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D3U04_RS30345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D3U04_RS30350 PF00550 Phosphopantetheine attachment site D3U04_RS30360 PF01039 Carboxyl transferase domain D3U04_RS30375 PF00795 Carbon-nitrogen hydrolase D3U04_RS30380 PF00082 Subtilase family D3U04_RS30400 PF00581 Rhodanese-like domain D3U04_RS30420 PF13380 CoA binding domain D3U04_RS30420 PF13607 Succinyl-CoA ligase like flavodoxin domain D3U04_RS30440 PF00270 DEAD/DEAH box helicase D3U04_RS30440 PF00271 Helicase conserved C-terminal domain D3U04_RS30440 PF09382 RQC domain D3U04_RS30440 PF00570 HRDC domain D3U04_RS30440 PF16124 RecQ zinc-binding D3U04_RS30470 PF09397 Ftsk gamma domain D3U04_RS30470 PF01580 FtsK/SpoIIIE family D3U04_RS30470 PF17854 FtsK alpha domain D3U04_RS30535 PF16177 Acetyl-coenzyme A synthetase N-terminus D3U04_RS30535 PF13193 AMP-binding enzyme C-terminal domain D3U04_RS30535 PF00501 AMP-binding enzyme D3U04_RS30540 PF06965 Na+/H+ antiporter 1 D3U04_RS30550 PF00561 alpha/beta hydrolase fold D3U04_RS30560 PF02674 Colicin V production protein D3U04_RS30565 PF00293 NUDIX domain D3U04_RS30570 PF00730 HhH-GPD superfamily base excision DNA repair protein D3U04_RS30570 PF00633 Helix-hairpin-helix motif D3U04_RS30570 PF10576 Iron-sulfur binding domain of endonuclease III D3U04_RS30575 PF00027 Cyclic nucleotide-binding domain D3U04_RS30575 PF13545 Crp-like helix-turn-helix domain D3U04_RS30580 PF16123 Hydroxyacylglutathione hydrolase C-terminus D3U04_RS30580 PF00753 Metallo-beta-lactamase superfamily D3U04_RS30610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D3U04_RS30610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D3U04_RS30620 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS30625 PF02575 YbaB/EbfC DNA-binding family D3U04_RS30630 PF00633 Helix-hairpin-helix motif D3U04_RS30630 PF02132 RecR protein D3U04_RS30630 PF13662 Toprim domain D3U04_RS30645 PF03466 LysR substrate binding domain D3U04_RS30645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS30650 PF00561 alpha/beta hydrolase fold D3U04_RS30655 PF03704 Bacterial transcriptional activator domain D3U04_RS30655 PF00931 NB-ARC domain D3U04_RS30655 PF00486 Transcriptional regulatory protein, C terminal D3U04_RS30660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3U04_RS30665 PF00696 Amino acid kinase family D3U04_RS30665 PF13840 ACT domain D3U04_RS30665 PF01842 ACT domain D3U04_RS30670 PF02774 Semialdehyde dehydrogenase, dimerisation domain D3U04_RS30670 PF01118 Semialdehyde dehydrogenase, NAD binding domain D3U04_RS30685 PF07859 alpha/beta hydrolase fold D3U04_RS30690 PF07859 alpha/beta hydrolase fold D3U04_RS30695 PF10672 S-adenosylmethionine-dependent methyltransferase D3U04_RS30695 PF01170 Putative RNA methylase family UPF0020 D3U04_RS30695 PF02926 THUMP domain D3U04_RS30710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D3U04_RS30710 PF03466 LysR substrate binding domain D3U04_RS30750 PF13520 Amino acid permease D3U04_RS30755 PF01965 DJ-1/PfpI family D3U04_RS30760 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS30770 PF00561 alpha/beta hydrolase fold D3U04_RS30780 PF00326 Prolyl oligopeptidase family D3U04_RS30800 PF00664 ABC transporter transmembrane region D3U04_RS30800 PF00005 ABC transporter D3U04_RS30805 PF13472 GDSL-like Lipase/Acylhydrolase family D3U04_RS30810 PF17763 Glutaminase/Asparaginase C-terminal domain D3U04_RS30810 PF00710 Asparaginase, N-terminal D3U04_RS30820 PF13556 PucR C-terminal helix-turn-helix domain D3U04_RS30820 PF17853 GGDEF-like domain D3U04_RS30820 PF05651 Putative sugar diacid recognition D3U04_RS30830 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS30830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D3U04_RS30845 PF08281 Sigma-70, region 4 D3U04_RS30845 PF04542 Sigma-70 region 2 D3U04_RS30865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D3U04_RS30865 PF02770 Acyl-CoA dehydrogenase, middle domain D3U04_RS30865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D3U04_RS30905 PF00005 ABC transporter D3U04_RS30910 PF16859 Tetracyclin repressor-like, C-terminal domain D3U04_RS30910 PF00440 Bacterial regulatory proteins, tetR family D3U04_RS30915 PF13411 MerR HTH family regulatory protein D3U04_RS30930 PF00141 Peroxidase D3U04_RS30935 PF01475 Ferric uptake regulator family D3U04_RS30955 PF01042 Endoribonuclease L-PSP D3U04_RS30965 PF10518 TAT (twin-arginine translocation) pathway signal sequence D3U04_RS30965 PF00149 Calcineurin-like phosphoesterase D3U04_RS30975 PF00912 Transglycosylase D3U04_RS30975 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS30980 PF02467 Transcription factor WhiB D3U04_RS30990 PF02374 Anion-transporting ATPase D3U04_RS31020 PF14659 Phage integrase, N-terminal SAM-like domain D3U04_RS31020 PF00589 Phage integrase family D3U04_RS31025 PF12728 Helix-turn-helix domain D3U04_RS31030 PF03796 DnaB-like helicase C terminal domain D3U04_RS31030 PF00772 DnaB-like helicase N terminal domain D3U04_RS31065 PF02467 Transcription factor WhiB D3U04_RS31095 PF01381 Helix-turn-helix D3U04_RS31095 PF08671 Anti-repressor SinI D3U04_RS31110 PF07690 Major Facilitator Superfamily D3U04_RS31115 PF00392 Bacterial regulatory proteins, gntR family D3U04_RS31115 PF07729 FCD domain D3U04_RS31160 PF14437 MafB19-like deaminase D3U04_RS31170 PF00712 DNA polymerase III beta subunit, N-terminal domain D3U04_RS31170 PF02767 DNA polymerase III beta subunit, central domain D3U04_RS31170 PF02768 DNA polymerase III beta subunit, C-terminal domain D3U04_RS31175 PF13302 Acetyltransferase (GNAT) domain D3U04_RS31180 PF00772 DnaB-like helicase N terminal domain D3U04_RS31180 PF03796 DnaB-like helicase C terminal domain D3U04_RS31185 PF01554 MatE D3U04_RS31205 PF01281 Ribosomal protein L9, N-terminal domain D3U04_RS31205 PF03948 Ribosomal protein L9, C-terminal domain D3U04_RS31210 PF01084 Ribosomal protein S18 D3U04_RS31215 PF00436 Single-strand binding protein family D3U04_RS31220 PF01250 Ribosomal protein S6 D3U04_RS31235 PF01261 Xylose isomerase-like TIM barrel D3U04_RS31240 PF08659 KR domain D3U04_RS31240 PF00550 Phosphopantetheine attachment site D3U04_RS31240 PF02801 Beta-ketoacyl synthase, C-terminal domain D3U04_RS31240 PF08240 Alcohol dehydrogenase GroES-like domain D3U04_RS31240 PF16197 Ketoacyl-synthetase C-terminal extension D3U04_RS31240 PF08990 Erythronolide synthase docking D3U04_RS31240 PF00698 Acyl transferase domain D3U04_RS31240 PF00109 Beta-ketoacyl synthase, N-terminal domain D3U04_RS31240 PF14765 Polyketide synthase dehydratase D3U04_RS31245 PF01965 DJ-1/PfpI family D3U04_RS31245 PF12833 Helix-turn-helix domain D3U04_RS31260 PF00912 Transglycosylase D3U04_RS31260 PF00905 Penicillin binding protein transpeptidase domain D3U04_RS31265 PF17249 Family of unknown function (DUF5318) D3U04_RS31275 PF01658 Myo-inositol-1-phosphate synthase D3U04_RS31295 PF08281 Sigma-70, region 4 D3U04_RS31295 PF04542 Sigma-70 region 2 D3U04_RS31330 PF00144 Beta-lactamase D3U04_RS31335 PF07992 Pyridine nucleotide-disulphide oxidoreductase D3U04_RS31350 PF04542 Sigma-70 region 2 D3U04_RS31350 PF08281 Sigma-70, region 4 D3U04_RS31355 PF03793 PASTA domain D3U04_RS31355 PF00069 Protein kinase domain D3U04_RS31360 PF03023 Lipid II flippase MurJ D3U04_RS31375 PF01743 Poly A polymerase head domain D3U04_RS31375 PF12627 Probable RNA and SrmB- binding site of polymerase A D3U04_RS31375 PF13735 tRNA nucleotidyltransferase domain 2 putative D3U04_RS31380 PF00202 Aminotransferase class-III D3U04_RS31390 PF07690 Major Facilitator Superfamily D3U04_RS31395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D3U04_RS31400 PF01636 Phosphotransferase enzyme family D3U04_RS31410 PF00155 Aminotransferase class I and II D3U04_RS31420 PF07478 D-ala D-ala ligase C-terminus D3U04_RS31420 PF01820 D-ala D-ala ligase N-terminus D3U04_RS31425 PF17762 HTH domain found in ParB protein D3U04_RS31425 PF02195 ParB-like nuclease domain D3U04_RS31430 PF13614 AAA domain D3U04_RS31435 PF01809 Putative membrane protein insertion efficiency factor D3U04_RS31440 PF02527 rRNA small subunit methyltransferase G D3U04_RS31455 PF02096 60Kd inner membrane protein D3U04_RS31460 PF01809 Putative membrane protein insertion efficiency factor D3U04_RS31465 PF00825 Ribonuclease P D3U04_RS31470 PF00468 Ribosomal protein L34