C3V41_RS00020	SM00460	Transglutaminase/protease-like homologues
C3V41_RS00025	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS00075	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00115	SM00331	Sigma factor PP2C-like phosphatases
C3V41_RS00115	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C3V41_RS00120	SM00240	Forkhead associated domain
C3V41_RS00135	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS00135	SM00448	cheY-homologous receiver domain
C3V41_RS00155	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00180	SM00354	helix_turn _helix lactose operon repressor
C3V41_RS00225	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00230	SM00387	Histidine kinase-like ATPases
C3V41_RS00235	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS00235	SM00448	cheY-homologous receiver domain
C3V41_RS00270	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS00360	SM00937	C3V41_RS00360
C3V41_RS00370	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00385	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00390	SM00387	Histidine kinase-like ATPases
C3V41_RS00390	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS00395	SM00448	cheY-homologous receiver domain
C3V41_RS00395	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS00440	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_RS00440	SM00866	C3V41_RS00440
C3V41_RS00470	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00490	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
C3V41_RS00490	SM01232	C3V41_RS00490
C3V41_RS00555	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00575	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00575	SM00994	ClpX C4-type zinc finger
C3V41_RS00575	SM01086	C-terminal, D2-small domain, of ClpB protein
C3V41_RS00580	SM00830	Chorismate mutase type II
C3V41_RS00615	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00625	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00630	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00635	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00645	SM00642	Alpha-amylase domain
C3V41_RS00655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_RS00655	SM00866	C3V41_RS00655
C3V41_RS00680	SM00845	GatB domain
C3V41_RS00740	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3V41_RS00750	SM00244	prohibitin homologues
C3V41_RS00770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_RS00770	SM00895	C3V41_RS00770
C3V41_RS00785	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00790	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00795	SM01130	C3V41_RS00795
C3V41_RS00810	SM00411	bacterial (prokaryotic) histone like domain
C3V41_RS00815	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS00835	SM00487	DEAD-like helicases superfamily
C3V41_RS01000	SM00861	Transketolase, pyrimidine binding domain
C3V41_RS01005	SM01091	Transporter associated domain
C3V41_RS01035	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01080	SM00836	DALR anticodon binding domain
C3V41_RS01080	SM01016	Arginyl tRNA synthetase N terminal dom
C3V41_RS01100	SM00028	Tetratricopeptide repeats
C3V41_RS01115	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01115	SM00959	Rho termination factor, N-terminal domain
C3V41_RS01135	SM00937	C3V41_RS01135
C3V41_RS01165	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS01205	SM01266	C3V41_RS01205
C3V41_RS01250	SM00642	Alpha-amylase domain
C3V41_RS01320	SM00858	C3V41_RS01320
C3V41_RS01330	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01370	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01380	SM00881	CoA binding domain
C3V41_RS01390	SM00798	AICARFT/IMPCHase bienzyme
C3V41_RS01390	SM00851	MGS-like domain
C3V41_RS01420	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01425	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01440	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_RS01530	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS01530	SM00448	cheY-homologous receiver domain
C3V41_RS01535	SM00387	Histidine kinase-like ATPases
C3V41_RS01540	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01575	SM00487	DEAD-like helicases superfamily
C3V41_RS01590	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_RS01590	SM00322	K homology RNA-binding domain
C3V41_RS01620	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS01630	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01655	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01715	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_RS01720	SM00833	Cobalamin synthesis protein cobW C-terminal domain
C3V41_RS01755	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS01835	SM01130	C3V41_RS01835
C3V41_RS01945	SM00864	Tubulin/FtsZ family, GTPase domain
C3V41_RS01945	SM00865	Tubulin/FtsZ family, C-terminal domain
C3V41_RS01975	SM00363	S4 RNA-binding domain
C3V41_RS01985	SM00481	DNA polymerase alpha chain like domain
C3V41_RS02000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3V41_RS02015	SM00710	Parallel beta-helix repeats
C3V41_RS02025	SM00822	C3V41_RS02025
C3V41_RS02075	SM00347	helix_turn_helix multiple antibiotic resistance protein
C3V41_RS02085	SM00487	DEAD-like helicases superfamily
C3V41_RS02085	SM00490	helicase superfamily c-terminal domain
C3V41_RS02100	SM00487	DEAD-like helicases superfamily
C3V41_RS02100	SM00490	helicase superfamily c-terminal domain
C3V41_RS02130	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_RS02155	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS02180	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02205	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02210	SM00062	Bacterial periplasmic substrate-binding proteins
C3V41_RS02210	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
C3V41_RS02225	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C3V41_RS02245	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02250	SM00422	helix_turn_helix, mercury resistance
C3V41_RS02260	SM00873	B3/4 domain
C3V41_RS02260	SM00874	tRNA synthetase B5 domain
C3V41_RS02260	SM00896	Ferredoxin-fold anticodon binding domain
C3V41_RS02335	SM00478	endonuclease III
C3V41_RS02375	SM00363	S4 RNA-binding domain
C3V41_RS02440	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02475	SM00422	helix_turn_helix, mercury resistance
C3V41_RS02505	SM00354	helix_turn _helix lactose operon repressor
C3V41_RS02510	SM00642	Alpha-amylase domain
C3V41_RS02535	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3V41_RS02540	SM00400	zinc finger
C3V41_RS02540	SM00493	C3V41_RS02540
C3V41_RS02570	SM00855	Phosphoglycerate mutase family
C3V41_RS02580	SM00849	Metallo-beta-lactamase superfamily
C3V41_RS02610	SM00271	DnaJ molecular chaperone homology domain
C3V41_RS02630	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02640	SM00829	Enoylreductase
C3V41_RS02645	SM00347	helix_turn_helix multiple antibiotic resistance protein
C3V41_RS02650	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02655	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02670	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_RS02670	SM01091	Transporter associated domain
C3V41_RS02690	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS02700	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02705	SM00917	LeuA allosteric (dimerisation) domain
C3V41_RS02730	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02760	SM00855	Phosphoglycerate mutase family
C3V41_RS02785	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02795	SM00244	prohibitin homologues
C3V41_RS02820	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02840	SM00448	cheY-homologous receiver domain
C3V41_RS02845	SM00563	Phosphate acyltransferases
C3V41_RS02860	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS02860	SM00740	C3V41_RS02860
C3V41_RS02875	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS02895	SM00450	Rhodanese Homology Domain
C3V41_RS02905	SM00857	Resolvase, N terminal domain
C3V41_RS02945	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS02955	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS02975	SM00363	S4 RNA-binding domain
C3V41_RS03000	SM01350	C3V41_RS03000
C3V41_RS03010	SM00240	Forkhead associated domain
C3V41_RS03015	SM00422	helix_turn_helix, mercury resistance
C3V41_RS03020	SM00422	helix_turn_helix, mercury resistance
C3V41_RS03040	SM00640	Glycosyl hydrolases family 32
C3V41_RS03050	SM00354	helix_turn _helix lactose operon repressor
C3V41_RS03070	SM01022	C3V41_RS03070
C3V41_RS03095	SM00487	DEAD-like helicases superfamily
C3V41_RS03095	SM00490	helicase superfamily c-terminal domain
C3V41_RS03095	SM01142	C3V41_RS03095
C3V41_RS03115	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_RS03160	SM00822	C3V41_RS03160
C3V41_RS03285	SM00434	DNA Topoisomerase IV
C3V41_RS03295	SM00387	Histidine kinase-like ATPases
C3V41_RS03295	SM00433	TopoisomeraseII
C3V41_RS03320	SM00363	S4 RNA-binding domain
C3V41_RS03360	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C3V41_RS03395	SM01061	CAT RNA binding domain
C3V41_RS03400	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C3V41_RS03400	SM00465	GIY-YIG type nucleases (URI domain)
C3V41_RS03485	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
C3V41_RS03495	SM00878	Biotin carboxylase C-terminal domain
C3V41_RS03525	SM00776	C3V41_RS03525
C3V41_RS03545	SM01409	C3V41_RS03545
C3V41_RS03550	SM00072	Guanylate kinase homologues.
C3V41_RS03560	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
C3V41_RS03565	SM00851	MGS-like domain
C3V41_RS03565	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
C3V41_RS03570	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
C3V41_RS03605	SM00841	Elongation factor P, C-terminal
C3V41_RS03605	SM01185	C3V41_RS03605
C3V41_RS03640	SM00732	Likely ribonuclease with RNase H fold.
C3V41_RS03645	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C3V41_RS03650	SM00363	S4 RNA-binding domain
C3V41_RS03650	SM01390	C3V41_RS03650
C3V41_RS03655	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS03680	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3V41_RS03705	SM00487	DEAD-like helicases superfamily
C3V41_RS03705	SM00490	helicase superfamily c-terminal domain
C3V41_RS03730	SM00487	DEAD-like helicases superfamily
C3V41_RS03730	SM00490	helicase superfamily c-terminal domain
C3V41_RS03765	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_RS03770	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
C3V41_RS03770	SM00475	5'-3' exonuclease
C3V41_RS03770	SM00482	DNA polymerase A domain
C3V41_RS03780	SM00448	cheY-homologous receiver domain
C3V41_RS03780	SM01012	C3V41_RS03780
C3V41_RS03840	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS03925	SM00014	Acid phosphatase homologues
C3V41_RS03940	SM00642	Alpha-amylase domain
C3V41_RS03950	SM00642	Alpha-amylase domain
C3V41_RS03965	SM00341	Helicase and RNase D C-terminal
C3V41_RS03965	SM00474	3'-5' exonuclease
C3V41_RS03985	SM00861	Transketolase, pyrimidine binding domain
C3V41_RS03995	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_RS04020	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS04030	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_RS04055	SM01230	C3V41_RS04055
C3V41_RS04060	SM00062	Bacterial periplasmic substrate-binding proteins
C3V41_RS04070	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04075	SM00855	Phosphoglycerate mutase family
C3V41_RS04085	SM01230	C3V41_RS04085
C3V41_RS04100	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04110	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04125	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3V41_RS04125	SM00954	Region found in RelA / SpoT proteins
C3V41_RS04145	SM01323	C3V41_RS04145
C3V41_RS04150	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04220	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C3V41_RS04240	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_RS04255	SM00838	Elongation factor G C-terminus
C3V41_RS04310	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04335	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C3V41_RS04355	SM00529	Helix-turn-helix diphteria tox regulatory element
C3V41_RS04360	SM00756	C3V41_RS04360
C3V41_RS04455	SM00825	Beta-ketoacyl synthase
C3V41_RS04495	SM00855	Phosphoglycerate mutase family
C3V41_RS04515	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_RS04515	SM01134	C3V41_RS04515
C3V41_RS04535	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
C3V41_RS04555	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_RS04585	SM00354	helix_turn _helix lactose operon repressor
C3V41_RS04590	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04595	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04600	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C3V41_RS04600	SM00387	Histidine kinase-like ATPases
C3V41_RS04605	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS04605	SM00448	cheY-homologous receiver domain
C3V41_RS04610	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
C3V41_RS04610	SM01232	C3V41_RS04610
C3V41_RS04615	SM00358	Double-stranded RNA binding motif
C3V41_RS04615	SM00535	Ribonuclease III family
C3V41_RS04645	SM00354	helix_turn _helix lactose operon repressor
C3V41_RS04655	SM00487	DEAD-like helicases superfamily
C3V41_RS04655	SM00490	helicase superfamily c-terminal domain
C3V41_RS04660	SM01120	C3V41_RS04660
C3V41_RS04660	SM01121	C3V41_RS04660
C3V41_RS04680	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04685	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04735	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS04750	SM00984	UDP binding domain
C3V41_RS04755	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_RS04755	SM00387	Histidine kinase-like ATPases
C3V41_RS04755	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS04760	SM00448	cheY-homologous receiver domain
C3V41_RS04760	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS04780	SM00346	helix_turn_helix isocitrate lyase regulation
C3V41_RS04815	SM00257	Lysin motif
C3V41_RS04835	SM00491	C3V41_RS04835
C3V41_RS04860	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_RS04860	SM00322	K homology RNA-binding domain
C3V41_RS04865	SM01387	C3V41_RS04865
C3V41_RS04870	SM00904	Riboflavin kinase
C3V41_RS04895	SM00854	Bacterial capsule synthesis protein PGA_cap
C3V41_RS04900	SM00843	C3V41_RS04900
C3V41_RS04915	SM00849	Metallo-beta-lactamase superfamily
C3V41_RS04975	SM00487	DEAD-like helicases superfamily
C3V41_RS04975	SM00490	helicase superfamily c-terminal domain
C3V41_RS05010	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05035	SM00479	C3V41_RS05035
C3V41_RS05040	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS05040	SM00740	C3V41_RS05040
C3V41_RS05045	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS05050	SM00240	Forkhead associated domain
C3V41_RS05050	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05065	SM01329	C3V41_RS05065
C3V41_RS05145	SM00852	Probable molybdopterin binding domain
C3V41_RS05160	SM00852	Probable molybdopterin binding domain
C3V41_RS05170	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C3V41_RS05195	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05205	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05210	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05215	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05230	SM00450	Rhodanese Homology Domain
C3V41_RS05255	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05260	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS05340	SM00257	Lysin motif
C3V41_RS05350	SM00957	SecA DEAD-like domain
C3V41_RS05350	SM00958	SecA preprotein cross-linking domain
C3V41_RS05365	SM00909	Sporulation and spore germination
C3V41_RS05375	SM00448	cheY-homologous receiver domain
C3V41_RS05375	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS05395	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05495	SM00833	Cobalamin synthesis protein cobW C-terminal domain
C3V41_RS05550	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05605	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS05605	SM00448	cheY-homologous receiver domain
C3V41_RS05655	SM00487	DEAD-like helicases superfamily
C3V41_RS05655	SM00490	helicase superfamily c-terminal domain
C3V41_RS05665	SM00481	DNA polymerase alpha chain like domain
C3V41_RS05680	SM01011	Aminopeptidase P, N-terminal domain
C3V41_RS05710	SM00327	von Willebrand factor (vWF) type A domain
C3V41_RS05720	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3V41_RS05730	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_RS05730	SM00924	MgtE intracellular N domain
C3V41_RS05780	SM00562	C3V41_RS05780
C3V41_RS05830	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS05835	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_RS05835	SM01134	C3V41_RS05835
C3V41_RS05945	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_RS05945	SM01134	C3V41_RS05945
C3V41_RS06030	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS06095	SM00644	C3V41_RS06095
C3V41_RS06095	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
C3V41_RS06130	SM01001	AIR carboxylase
C3V41_RS06155	SM00387	Histidine kinase-like ATPases
C3V41_RS06155	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS06160	SM00448	cheY-homologous receiver domain
C3V41_RS06160	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS06165	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
C3V41_RS06225	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
C3V41_RS06225	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
C3V41_RS06260	SM00919	Malic enzyme, NAD binding domain
C3V41_RS06260	SM01274	C3V41_RS06260
C3V41_RS06275	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS06330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_RS06335	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS06365	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS06365	SM00448	cheY-homologous receiver domain
C3V41_RS06370	SM00861	Transketolase, pyrimidine binding domain
C3V41_RS06380	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS06395	SM00478	endonuclease III
C3V41_RS06405	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS06405	SM00448	cheY-homologous receiver domain
C3V41_RS06430	SM00479	C3V41_RS06430
C3V41_RS06435	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_RS06435	SM01240	C3V41_RS06435
C3V41_RS06445	SM00883	Chaperonin 10 Kd subunit
C3V41_RS06515	SM01005	Alanine racemase, C-terminal domain
C3V41_RS06550	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS06560	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS06560	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS06560	SM01043	Bacterial transcriptional activator domain
C3V41_RS06605	SM00662	RNA polymerases D
C3V41_RS06700	SM01374	C3V41_RS06700
C3V41_RS06720	SM00322	K homology RNA-binding domain
C3V41_RS06735	SM01382	C3V41_RS06735
C3V41_RS06735	SM01383	C3V41_RS06735
C3V41_RS06755	SM01403	C3V41_RS06755
C3V41_RS06780	SM00838	Elongation factor G C-terminus
C3V41_RS06780	SM00889	Elongation factor G, domain IV
C3V41_RS06850	SM00240	Forkhead associated domain
C3V41_RS06850	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS06870	SM00331	Sigma factor PP2C-like phosphatases
C3V41_RS06870	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C3V41_RS06880	SM00460	Transglutaminase/protease-like homologues
C3V41_RS06895	SM00060	Fibronectin type 3 domain
C3V41_RS06900	SM00028	Tetratricopeptide repeats
C3V41_RS06905	SM00028	Tetratricopeptide repeats
C3V41_RS06910	SM00028	Tetratricopeptide repeats
C3V41_RS06980	SM00327	von Willebrand factor (vWF) type A domain
C3V41_RS07025	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS07050	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07095	SM00663	RNA polymerase I subunit A N-terminus
C3V41_RS07125	SM00649	Ribosomal protein L11/L12
C3V41_RS07130	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
C3V41_RS07165	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3V41_RS07175	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
C3V41_RS07220	SM00855	Phosphoglycerate mutase family
C3V41_RS07265	SM00838	Elongation factor G C-terminus
C3V41_RS07280	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07295	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07425	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07435	SM00028	Tetratricopeptide repeats
C3V41_RS07440	SM00028	Tetratricopeptide repeats
C3V41_RS07445	SM00028	Tetratricopeptide repeats
C3V41_RS07450	SM00028	Tetratricopeptide repeats
C3V41_RS07525	SM00028	Tetratricopeptide repeats
C3V41_RS07540	SM00028	Tetratricopeptide repeats
C3V41_RS07555	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07560	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07590	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07620	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
C3V41_RS07630	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS07635	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07635	SM01086	C-terminal, D2-small domain, of ClpB protein
C3V41_RS07660	SM00422	helix_turn_helix, mercury resistance
C3V41_RS07665	SM00271	DnaJ molecular chaperone homology domain
C3V41_RS07685	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07695	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS07695	SM00448	cheY-homologous receiver domain
C3V41_RS07745	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_RS07780	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS07785	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07825	SM00478	endonuclease III
C3V41_RS07830	SM00100	Cyclic nucleotide-monophosphate binding domain
C3V41_RS07830	SM00419	helix_turn_helix, cAMP Regulatory protein
C3V41_RS07900	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07905	SM00493	C3V41_RS07905
C3V41_RS07910	SM00422	helix_turn_helix, mercury resistance
C3V41_RS07920	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS07980	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C3V41_RS08015	SM00919	Malic enzyme, NAD binding domain
C3V41_RS08015	SM01274	C3V41_RS08015
C3V41_RS08035	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS08070	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS08120	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C3V41_RS08125	SM00840	C3V41_RS08125
C3V41_RS08145	SM00093	SERine  Proteinase INhibitors
C3V41_RS08150	SM00093	SERine  Proteinase INhibitors
C3V41_RS08190	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS08200	SM00650	Ribosomal RNA adenine dimethylases
C3V41_RS08205	SM01208	C3V41_RS08205
C3V41_RS08210	SM01208	C3V41_RS08210
C3V41_RS08255	SM00870	C3V41_RS08255
C3V41_RS08265	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS08280	SM00731	SprT homologues.
C3V41_RS08300	SM01058	CarD-like/TRCF domain
C3V41_RS08305	SM00448	cheY-homologous receiver domain
C3V41_RS08305	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS08310	SM00387	Histidine kinase-like ATPases
C3V41_RS08310	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS08355	SM00487	DEAD-like helicases superfamily
C3V41_RS08355	SM00490	helicase superfamily c-terminal domain
C3V41_RS08355	SM00982	C3V41_RS08355
C3V41_RS08355	SM01058	CarD-like/TRCF domain
C3V41_RS08390	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS08395	SM00240	Forkhead associated domain
C3V41_RS08400	SM00460	Transglutaminase/protease-like homologues
C3V41_RS08420	SM00060	Fibronectin type 3 domain
C3V41_RS08550	SM01400	C3V41_RS08550
C3V41_RS08660	SM01101	C3V41_RS08660
C3V41_RS08710	SM00354	helix_turn _helix lactose operon repressor
C3V41_RS08715	SM01038	Beta galactosidase small chain
C3V41_RS08770	SM00507	HNH nucleases
C3V41_RS08785	SM00448	cheY-homologous receiver domain
C3V41_RS08790	SM00387	Histidine kinase-like ATPases
C3V41_RS08835	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS08855	SM00448	cheY-homologous receiver domain
C3V41_RS08855	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS08860	SM00387	Histidine kinase-like ATPases
C3V41_RS08860	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS08880	SM01120	C3V41_RS08880
C3V41_RS08955	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS09030	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS09040	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS09040	SM00448	cheY-homologous receiver domain
C3V41_RS09210	SM00354	helix_turn _helix lactose operon repressor
C3V41_RS09270	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3V41_RS09325	SM00829	Enoylreductase
C3V41_RS09340	SM00470	ParB-like nuclease domain
C3V41_RS09355	SM00393	Putative single-stranded nucleic acids-binding domain
C3V41_RS09365	SM01234	C3V41_RS09365
C3V41_RS09380	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS09380	SM00760	Bacterial dnaA protein helix-turn-helix domain
C3V41_RS09385	SM00480	DNA polymerase III beta subunit
C3V41_RS09405	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS09425	SM00387	Histidine kinase-like ATPases
C3V41_RS09425	SM00433	TopoisomeraseII
C3V41_RS09430	SM00434	DNA Topoisomerase IV
C3V41_RS09520	SM00240	Forkhead associated domain
C3V41_RS09525	SM00240	Forkhead associated domain
C3V41_RS09530	SM00331	Sigma factor PP2C-like phosphatases
C3V41_RS09530	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C3V41_RS09550	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS09550	SM00740	C3V41_RS09550
C3V41_RS09660	SM00831	Cation transporter/ATPase, N-terminus
C3V41_RS09705	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS09750	SM00487	DEAD-like helicases superfamily
C3V41_RS09750	SM00490	helicase superfamily c-terminal domain
C3V41_RS09830	SM00226	Low molecular weight phosphatase family
C3V41_RS09855	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS09880	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS09955	SM00244	prohibitin homologues
C3V41_RS09975	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10060	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10070	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_RS10070	SM01240	C3V41_RS10070
C3V41_RS10120	SM00858	C3V41_RS10120
C3V41_RS10155	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10180	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
C3V41_RS10180	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
C3V41_RS10180	SM00493	C3V41_RS10180
C3V41_RS10245	SM00858	C3V41_RS10245
C3V41_RS10255	SM00852	Probable molybdopterin binding domain
C3V41_RS10270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_RS10270	SM00387	Histidine kinase-like ATPases
C3V41_RS10270	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS10275	SM00448	cheY-homologous receiver domain
C3V41_RS10275	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS10290	SM00986	Uracil DNA glycosylase superfamily
C3V41_RS10290	SM00987	UreE urease accessory protein, C-terminal domain 
C3V41_RS10320	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_RS10320	SM00387	Histidine kinase-like ATPases
C3V41_RS10320	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS10325	SM00448	cheY-homologous receiver domain
C3V41_RS10325	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS10370	SM00487	DEAD-like helicases superfamily
C3V41_RS10370	SM00490	helicase superfamily c-terminal domain
C3V41_RS10395	SM00529	Helix-turn-helix diphteria tox regulatory element
C3V41_RS10415	SM00855	Phosphoglycerate mutase family
C3V41_RS10420	SM01192	C3V41_RS10420
C3V41_RS10420	SM01193	C3V41_RS10420
C3V41_RS10475	SM00226	Low molecular weight phosphatase family
C3V41_RS10505	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS10505	SM00448	cheY-homologous receiver domain
C3V41_RS10520	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10600	SM00670	Large family of predicted nucleotide-binding domains
C3V41_RS10625	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS10715	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
C3V41_RS10760	SM00240	Forkhead associated domain
C3V41_RS10760	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10780	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
C3V41_RS10815	SM00740	C3V41_RS10815
C3V41_RS10815	SM00894	Excalibur calcium-binding domain
C3V41_RS10870	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10910	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10920	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS10920	SM00487	DEAD-like helicases superfamily
C3V41_RS10920	SM00490	helicase superfamily c-terminal domain
C3V41_RS10920	SM00847	Helicase associated domain (HA2)  Add an annotation
C3V41_RS10935	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_RS11015	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11020	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11175	SM00479	C3V41_RS11175
C3V41_RS11280	SM00448	cheY-homologous receiver domain
C3V41_RS11315	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11380	SM01209	C3V41_RS11380
C3V41_RS11380	SM01210	C3V41_RS11380
C3V41_RS11430	SM01211	C3V41_RS11430
C3V41_RS11465	SM00422	helix_turn_helix, mercury resistance
C3V41_RS11515	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
C3V41_RS11520	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_RS11520	SM01134	C3V41_RS11520
C3V41_RS11570	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11620	SM00487	DEAD-like helicases superfamily
C3V41_RS11620	SM00490	helicase superfamily c-terminal domain
C3V41_RS11630	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11685	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11820	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11870	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS11870	SM00448	cheY-homologous receiver domain
C3V41_RS11880	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS11890	SM00905	Dihydroneopterin aldolase
C3V41_RS11975	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_RS11975	SM00387	Histidine kinase-like ATPases
C3V41_RS11975	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_RS11980	SM00448	cheY-homologous receiver domain
C3V41_RS11980	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS11995	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12050	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
C3V41_RS12055	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
C3V41_RS12110	SM01101	C3V41_RS12110
C3V41_RS12135	SM00487	DEAD-like helicases superfamily
C3V41_RS12150	SM00341	Helicase and RNase D C-terminal
C3V41_RS12210	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12220	SM01133	C3V41_RS12220
C3V41_RS12225	SM00642	Alpha-amylase domain
C3V41_RS12245	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12285	SM01155	C3V41_RS12285
C3V41_RS12315	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12330	SM00862	Transcriptional regulatory protein, C terminal
C3V41_RS12345	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12350	SM00968	SMC proteins Flexible Hinge Domain
C3V41_RS12370	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12370	SM00962	SRP54-type protein, GTPase domain
C3V41_RS12370	SM00963	SRP54-type protein, helical bundle domain
C3V41_RS12380	SM00421	helix_turn_helix, Lux Regulon
C3V41_RS12380	SM00448	cheY-homologous receiver domain
C3V41_RS12395	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12400	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12400	SM00962	SRP54-type protein, GTPase domain
C3V41_RS12400	SM00963	SRP54-type protein, helical bundle domain
C3V41_RS12405	SM00642	Alpha-amylase domain
C3V41_RS12415	SM00642	Alpha-amylase domain
C3V41_RS12425	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12445	SM00642	Alpha-amylase domain
C3V41_RS12450	SM00893	Electron transfer flavoprotein domain
C3V41_RS12460	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12470	SM00327	von Willebrand factor (vWF) type A domain
C3V41_RS12495	SM00567	E-Z type HEAT repeats
C3V41_RS12530	SM00387	Histidine kinase-like ATPases
C3V41_RS12550	SM00292	breast cancer carboxy-terminal domain
C3V41_RS12550	SM00532	Ligase N family
C3V41_RS12585	SM00506	Appr-1"-p processing enzyme
C3V41_RS12605	SM00382	ATPases associated with a variety of cellular activities
C3V41_RS12605	SM01086	C-terminal, D2-small domain, of ClpB protein
C3V41_RS12670	SM00363	S4 RNA-binding domain
