locus-tag class description HCQ94_RS00005 PF11638 DnaA N-terminal domain HCQ94_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix HCQ94_RS00005 PF00308 Bacterial dnaA protein HCQ94_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain HCQ94_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain HCQ94_RS00010 PF02767 DNA polymerase III beta subunit, central domain HCQ94_RS00015 PF02463 RecF/RecN/SMC N terminal domain HCQ94_RS00020 PF05258 Dna[CI] antecedent, DciA HCQ94_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus HCQ94_RS00025 PF01751 Toprim domain HCQ94_RS00025 PF00204 DNA gyrase B HCQ94_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A HCQ94_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller HCQ94_RS00060 PF01694 Rhomboid family HCQ94_RS00060 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HCQ94_RS00065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HCQ94_RS00080 PF06781 Cell division protein CrgA HCQ94_RS00085 PF04203 Sortase domain HCQ94_RS00100 PF03313 Serine dehydratase alpha chain HCQ94_RS00100 PF03315 Serine dehydratase beta chain HCQ94_RS00105 PF01048 Phosphorylase superfamily HCQ94_RS00110 PF00462 Glutaredoxin HCQ94_RS00115 PF07972 NrdI Flavodoxin like HCQ94_RS00120 PF08343 Ribonucleotide reductase N-terminal HCQ94_RS00120 PF00317 Ribonucleotide reductase, all-alpha domain HCQ94_RS00120 PF02867 Ribonucleotide reductase, barrel domain HCQ94_RS00125 PF00268 Ribonucleotide reductase, small chain HCQ94_RS00130 PF01268 Formate--tetrahydrofolate ligase HCQ94_RS00135 PF00440 Bacterial regulatory proteins, tetR family HCQ94_RS00135 PF08361 MAATS-type transcriptional repressor, C-terminal region HCQ94_RS00145 PF00270 DEAD/DEAH box helicase HCQ94_RS00145 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HCQ94_RS00145 PF04408 Helicase associated domain (HA2) HCQ94_RS00145 PF11898 Domain of unknown function (DUF3418) HCQ94_RS00145 PF00271 Helicase conserved C-terminal domain HCQ94_RS00150 PF00498 FHA domain HCQ94_RS00155 PF16697 Inner membrane component of T3SS, cytoplasmic domain HCQ94_RS00165 PF01098 Cell cycle protein HCQ94_RS00170 PF00905 Penicillin binding protein transpeptidase domain HCQ94_RS00175 PF00069 Protein kinase domain HCQ94_RS00180 PF00069 Protein kinase domain HCQ94_RS00180 PF03793 PASTA domain HCQ94_RS00185 PF09383 NIL domain HCQ94_RS00185 PF00005 ABC transporter HCQ94_RS00195 PF00709 Adenylosuccinate synthetase HCQ94_RS00200 PF02780 Transketolase, C-terminal domain HCQ94_RS00200 PF00456 Transketolase, thiamine diphosphate binding domain HCQ94_RS00200 PF02779 Transketolase, pyrimidine binding domain HCQ94_RS00205 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HCQ94_RS00210 PF00300 Histidine phosphatase superfamily (branch 1) HCQ94_RS00215 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain HCQ94_RS00215 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain HCQ94_RS00225 PF02542 YgbB family HCQ94_RS00235 PF01406 tRNA synthetases class I (C) catalytic domain HCQ94_RS00235 PF09190 DALR domain HCQ94_RS00240 PF08032 RNA 2'-O ribose methyltransferase substrate binding HCQ94_RS00240 PF00588 SpoU rRNA Methylase family HCQ94_RS00245 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HCQ94_RS00245 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HCQ94_RS00265 PF10576 Iron-sulfur binding domain of endonuclease III HCQ94_RS00265 PF00633 Helix-hairpin-helix motif HCQ94_RS00265 PF00730 HhH-GPD superfamily base excision DNA repair protein HCQ94_RS00300 PF01641 SelR domain HCQ94_RS00300 PF01625 Peptide methionine sulfoxide reductase HCQ94_RS00305 PF01384 Phosphate transporter family HCQ94_RS00310 PF01865 Protein of unknown function DUF47 HCQ94_RS00320 PF08768 Domain of unknown function (DUF1794) HCQ94_RS00325 PF01571 Aminomethyltransferase folate-binding domain HCQ94_RS00330 PF02580 D-Tyr-tRNA(Tyr) deacylase HCQ94_RS00335 PF02861 Clp amino terminal domain, pathogenicity island component HCQ94_RS00335 PF10431 C-terminal, D2-small domain, of ClpB protein HCQ94_RS00335 PF00004 ATPase family associated with various cellular activities (AAA) HCQ94_RS00335 PF17871 AAA lid domain HCQ94_RS00335 PF07724 AAA domain (Cdc48 subfamily) HCQ94_RS00340 PF00391 PEP-utilising enzyme, mobile domain HCQ94_RS00340 PF02896 PEP-utilising enzyme, TIM barrel domain HCQ94_RS00340 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HCQ94_RS00345 PF00375 Sodium:dicarboxylate symporter family HCQ94_RS00355 PF00860 Permease family HCQ94_RS00360 PF01594 AI-2E family transporter HCQ94_RS00370 PF00999 Sodium/hydrogen exchanger family HCQ94_RS00385 PF12169 DNA polymerase III subunits gamma and tau domain III HCQ94_RS00390 PF13662 Toprim domain HCQ94_RS00390 PF02132 RecR protein HCQ94_RS00400 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) HCQ94_RS00425 PF00005 ABC transporter HCQ94_RS00425 PF08402 TOBE domain HCQ94_RS00430 PF02754 Cysteine-rich domain HCQ94_RS00430 PF02665 Nitrate reductase gamma subunit HCQ94_RS00430 PF13183 4Fe-4S dicluster domain HCQ94_RS00435 PF17758 Proteasomal ATPase OB N-terminal domain HCQ94_RS00435 PF16450 Proteasomal ATPase OB C-terminal domain HCQ94_RS00435 PF00004 ATPase family associated with various cellular activities (AAA) HCQ94_RS00440 PF03136 Pup-ligase protein HCQ94_RS00445 PF05639 Pup-like protein HCQ94_RS00450 PF03136 Pup-ligase protein HCQ94_RS00455 PF01791 DeoC/LacD family aldolase HCQ94_RS00485 PF01380 SIS domain HCQ94_RS00485 PF00571 CBS domain HCQ94_RS00490 PF00294 pfkB family carbohydrate kinase HCQ94_RS00500 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS00505 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS00510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HCQ94_RS00510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HCQ94_RS00515 PF00596 Class II Aldolase and Adducin N-terminal domain HCQ94_RS00520 PF01116 Fructose-bisphosphate aldolase class-II HCQ94_RS00535 PF04560 RNA polymerase Rpb2, domain 7 HCQ94_RS00535 PF10385 RNA polymerase beta subunit external 1 domain HCQ94_RS00535 PF00562 RNA polymerase Rpb2, domain 6 HCQ94_RS00535 PF04565 RNA polymerase Rpb2, domain 3 HCQ94_RS00535 PF04561 RNA polymerase Rpb2, domain 2 HCQ94_RS00535 PF04563 RNA polymerase beta subunit HCQ94_RS00540 PF00623 RNA polymerase Rpb1, domain 2 HCQ94_RS00540 PF04997 RNA polymerase Rpb1, domain 1 HCQ94_RS00540 PF04998 RNA polymerase Rpb1, domain 5 HCQ94_RS00540 PF05000 RNA polymerase Rpb1, domain 4 HCQ94_RS00540 PF04983 RNA polymerase Rpb1, domain 3 HCQ94_RS00555 PF00164 Ribosomal protein S12/S23 HCQ94_RS00560 PF00177 Ribosomal protein S7p/S5e HCQ94_RS00565 PF00009 Elongation factor Tu GTP binding domain HCQ94_RS00565 PF03764 Elongation factor G, domain IV HCQ94_RS00565 PF03144 Elongation factor Tu domain 2 HCQ94_RS00565 PF00679 Elongation factor G C-terminus HCQ94_RS00565 PF14492 Elongation Factor G, domain II HCQ94_RS00570 PF03143 Elongation factor Tu C-terminal domain HCQ94_RS00570 PF00009 Elongation factor Tu GTP binding domain HCQ94_RS00570 PF03144 Elongation factor Tu domain 2 HCQ94_RS00575 PF17994 Galactofuranosyltransferase 2 N-terminal HCQ94_RS00580 PF00338 Ribosomal protein S10p/S20e HCQ94_RS00585 PF00297 Ribosomal protein L3 HCQ94_RS00590 PF00573 Ribosomal protein L4/L1 family HCQ94_RS00595 PF00276 Ribosomal protein L23 HCQ94_RS00600 PF00181 Ribosomal Proteins L2, RNA binding domain HCQ94_RS00600 PF03947 Ribosomal Proteins L2, C-terminal domain HCQ94_RS00605 PF00203 Ribosomal protein S19 HCQ94_RS00610 PF00237 Ribosomal protein L22p/L17e HCQ94_RS00615 PF07650 KH domain HCQ94_RS00615 PF00189 Ribosomal protein S3, C-terminal domain HCQ94_RS00620 PF00252 Ribosomal protein L16p/L10e HCQ94_RS00625 PF00831 Ribosomal L29 protein HCQ94_RS00630 PF00366 Ribosomal protein S17 HCQ94_RS00635 PF00238 Ribosomal protein L14p/L23e HCQ94_RS00640 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HCQ94_RS00645 PF00673 ribosomal L5P family C-terminus HCQ94_RS00645 PF00281 Ribosomal protein L5 HCQ94_RS00650 PF00253 Ribosomal protein S14p/S29e HCQ94_RS00655 PF00410 Ribosomal protein S8 HCQ94_RS00660 PF00347 Ribosomal protein L6 HCQ94_RS00665 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HCQ94_RS00670 PF00333 Ribosomal protein S5, N-terminal domain HCQ94_RS00670 PF03719 Ribosomal protein S5, C-terminal domain HCQ94_RS00675 PF00327 Ribosomal protein L30p/L7e HCQ94_RS00680 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HCQ94_RS00685 PF00344 SecY translocase HCQ94_RS00695 PF00557 Metallopeptidase family M24 HCQ94_RS00700 PF01176 Translation initiation factor 1A / IF-1 HCQ94_RS00705 PF00444 Ribosomal protein L36 HCQ94_RS00710 PF00416 Ribosomal protein S13/S18 HCQ94_RS00715 PF00411 Ribosomal protein S11 HCQ94_RS00720 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HCQ94_RS00720 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HCQ94_RS00720 PF01000 RNA polymerase Rpb3/RpoA insert domain HCQ94_RS00725 PF01196 Ribosomal protein L17 HCQ94_RS00730 PF01416 tRNA pseudouridine synthase HCQ94_RS00735 PF00572 Ribosomal protein L13 HCQ94_RS00740 PF00380 Ribosomal protein S9/S16 HCQ94_RS00745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HCQ94_RS00745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HCQ94_RS00745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HCQ94_RS00745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HCQ94_RS00750 PF01741 Large-conductance mechanosensitive channel, MscL HCQ94_RS00755 PF09335 SNARE associated Golgi protein HCQ94_RS00760 PF00485 Phosphoribulokinase / Uridine kinase family HCQ94_RS00765 PF01380 SIS domain HCQ94_RS00770 PF17961 Bacterial Ig domain HCQ94_RS00770 PF04650 YSIRK type signal peptide HCQ94_RS00770 PF17210 SdrD B-like domain HCQ94_RS00770 PF00746 LPXTG cell wall anchor motif HCQ94_RS00770 PF10425 C-terminus of bacterial fibrinogen-binding adhesin HCQ94_RS00800 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) HCQ94_RS00800 PF07581 The GLUG motif HCQ94_RS00805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HCQ94_RS00810 PF09334 tRNA synthetases class I (M) HCQ94_RS00815 PF01026 TatD related DNase HCQ94_RS00820 PF04650 YSIRK type signal peptide HCQ94_RS00820 PF00746 LPXTG cell wall anchor motif HCQ94_RS00820 PF17041 E domain HCQ94_RS00820 PF07501 G5 domain HCQ94_RS00825 PF00398 Ribosomal RNA adenine dimethylase HCQ94_RS00830 PF08544 GHMP kinases C terminal HCQ94_RS00830 PF00288 GHMP kinases N terminal domain HCQ94_RS00835 PF00196 Bacterial regulatory proteins, luxR family HCQ94_RS00840 PF03606 C4-dicarboxylate anaerobic carrier HCQ94_RS00845 PF12848 ABC transporter HCQ94_RS00845 PF16326 ABC transporter C-terminal domain HCQ94_RS00845 PF00005 ABC transporter HCQ94_RS00860 PF12804 MobA-like NTP transferase domain HCQ94_RS00865 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HCQ94_RS00865 PF14572 Phosphoribosyl synthetase-associated domain HCQ94_RS00870 PF01386 Ribosomal L25p family HCQ94_RS00870 PF14693 Ribosomal protein TL5, C-terminal domain HCQ94_RS00875 PF01195 Peptidyl-tRNA hydrolase HCQ94_RS00880 PF03461 TRCF domain HCQ94_RS00880 PF17757 UvrB interaction domain HCQ94_RS00880 PF00271 Helicase conserved C-terminal domain HCQ94_RS00880 PF02559 CarD-like/TRCF domain HCQ94_RS00880 PF00270 DEAD/DEAH box helicase HCQ94_RS00885 PF00113 Enolase, C-terminal TIM barrel domain HCQ94_RS00885 PF03952 Enolase, N-terminal domain HCQ94_RS00900 PF02541 Ppx/GppA phosphatase family HCQ94_RS00910 PF06965 Na+/H+ antiporter 1 HCQ94_RS00920 PF00196 Bacterial regulatory proteins, luxR family HCQ94_RS00920 PF00072 Response regulator receiver domain HCQ94_RS00925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS00925 PF07730 Histidine kinase HCQ94_RS00935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HCQ94_RS00935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HCQ94_RS00940 PF03449 Transcription elongation factor, N-terminal HCQ94_RS00940 PF01272 Transcription elongation factor, GreA/GreB, C-term HCQ94_RS00945 PF01255 Putative undecaprenyl diphosphate synthase HCQ94_RS00950 PF00294 pfkB family carbohydrate kinase HCQ94_RS00955 PF02609 Exonuclease VII small subunit HCQ94_RS00960 PF02601 Exonuclease VII, large subunit HCQ94_RS00960 PF13742 OB-fold nucleic acid binding domain HCQ94_RS00965 PF02401 LytB protein HCQ94_RS00970 PF06071 Protein of unknown function (DUF933) HCQ94_RS00970 PF01926 50S ribosome-binding GTPase HCQ94_RS00975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HCQ94_RS00980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HCQ94_RS00985 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS00990 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS00990 PF12911 N-terminal TM domain of oligopeptide transport permease C HCQ94_RS00995 PF00005 ABC transporter HCQ94_RS00995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HCQ94_RS01000 PF00464 Serine hydroxymethyltransferase HCQ94_RS01005 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HCQ94_RS01005 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HCQ94_RS01040 PF02569 Pantoate-beta-alanine ligase HCQ94_RS01045 PF00152 tRNA synthetases class II (D, K and N) HCQ94_RS01045 PF01336 OB-fold nucleic acid binding domain HCQ94_RS01050 PF00535 Glycosyl transferase family 2 HCQ94_RS01055 PF00535 Glycosyl transferase family 2 HCQ94_RS01060 PF00535 Glycosyl transferase family 2 HCQ94_RS01065 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HCQ94_RS01065 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HCQ94_RS01065 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HCQ94_RS01075 PF03448 MgtE intracellular N domain HCQ94_RS01075 PF01769 Divalent cation transporter HCQ94_RS01075 PF00571 CBS domain HCQ94_RS01080 PF01545 Cation efflux family HCQ94_RS01085 PF10609 NUBPL iron-transfer P-loop NTPase HCQ94_RS01085 PF01883 Iron-sulfur cluster assembly protein HCQ94_RS01090 PF01757 Acyltransferase family HCQ94_RS01095 PF00313 'Cold-shock' DNA-binding domain HCQ94_RS01105 PF07969 Amidohydrolase family HCQ94_RS01110 PF00860 Permease family HCQ94_RS01115 PF00535 Glycosyl transferase family 2 HCQ94_RS01125 PF02742 Iron dependent repressor, metal binding and dimerisation domain HCQ94_RS01125 PF01325 Iron dependent repressor, N-terminal DNA binding domain HCQ94_RS01125 PF18357 Diphteria toxin repressor SH3 domain HCQ94_RS01130 PF00877 NlpC/P60 family HCQ94_RS01135 PF00582 Universal stress protein family HCQ94_RS01150 PF08240 Alcohol dehydrogenase GroES-like domain HCQ94_RS01150 PF00107 Zinc-binding dehydrogenase HCQ94_RS01155 PF02082 Transcriptional regulator HCQ94_RS01165 PF03099 Biotin/lipoate A/B protein ligase family HCQ94_RS01170 PF04055 Radical SAM superfamily HCQ94_RS01170 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HCQ94_RS01175 PF13193 AMP-binding enzyme C-terminal domain HCQ94_RS01175 PF00501 AMP-binding enzyme HCQ94_RS01190 PF01812 5-formyltetrahydrofolate cyclo-ligase family HCQ94_RS01195 PF00483 Nucleotidyl transferase HCQ94_RS01200 PF00994 Probable molybdopterin binding domain HCQ94_RS01200 PF03454 MoeA C-terminal region (domain IV) HCQ94_RS01200 PF03453 MoeA N-terminal region (domain I and II) HCQ94_RS01205 PF13302 Acetyltransferase (GNAT) domain HCQ94_RS01215 PF03641 Possible lysine decarboxylase HCQ94_RS01225 PF00005 ABC transporter HCQ94_RS01230 PF02655 ATP-grasp domain HCQ94_RS01230 PF04262 Glutamate-cysteine ligase HCQ94_RS01230 PF18419 ATP-grasp-like domain HCQ94_RS01265 PF00012 Hsp70 protein HCQ94_RS01270 PF01025 GrpE HCQ94_RS01275 PF00684 DnaJ central domain HCQ94_RS01275 PF01556 DnaJ C terminal domain HCQ94_RS01275 PF00226 DnaJ domain HCQ94_RS01280 PF13411 MerR HTH family regulatory protein HCQ94_RS01285 PF06826 Predicted Permease Membrane Region HCQ94_RS01285 PF02080 TrkA-C domain HCQ94_RS01290 PF07724 AAA domain (Cdc48 subfamily) HCQ94_RS01290 PF00004 ATPase family associated with various cellular activities (AAA) HCQ94_RS01290 PF10431 C-terminal, D2-small domain, of ClpB protein HCQ94_RS01290 PF17871 AAA lid domain HCQ94_RS01290 PF02861 Clp amino terminal domain, pathogenicity island component HCQ94_RS01300 PF00106 short chain dehydrogenase HCQ94_RS01305 PF00842 Alanine racemase, C-terminal domain HCQ94_RS01305 PF01168 Alanine racemase, N-terminal domain HCQ94_RS01310 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HCQ94_RS01315 PF00814 Glycoprotease family HCQ94_RS01315 PF00583 Acetyltransferase (GNAT) family HCQ94_RS01330 PF00890 FAD binding domain HCQ94_RS01330 PF02910 Fumarate reductase flavoprotein C-term HCQ94_RS01335 PF13085 2Fe-2S iron-sulfur cluster binding domain HCQ94_RS01335 PF13183 4Fe-4S dicluster domain HCQ94_RS01340 PF00814 Glycoprotease family HCQ94_RS01350 PF00166 Chaperonin 10 Kd subunit HCQ94_RS01355 PF00478 IMP dehydrogenase / GMP reductase domain HCQ94_RS01355 PF00571 CBS domain HCQ94_RS01390 PF13603 Leucyl-tRNA synthetase, Domain 2 HCQ94_RS01390 PF08264 Anticodon-binding domain of tRNA HCQ94_RS01390 PF09334 tRNA synthetases class I (M) HCQ94_RS01410 PF02646 RmuC family HCQ94_RS01415 PF03193 RsgA GTPase HCQ94_RS01425 PF04542 Sigma-70 region 2 HCQ94_RS01425 PF08281 Sigma-70, region 4 HCQ94_RS01450 PF16078 2-oxoglutarate dehydrogenase N-terminus HCQ94_RS01450 PF16870 2-oxoglutarate dehydrogenase C-terminal HCQ94_RS01450 PF00676 Dehydrogenase E1 component HCQ94_RS01450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HCQ94_RS01450 PF02779 Transketolase, pyrimidine binding domain HCQ94_RS01455 PF00571 CBS domain HCQ94_RS01455 PF03471 Transporter associated domain HCQ94_RS01455 PF01595 Cyclin M transmembrane N-terminal domain HCQ94_RS01460 PF00571 CBS domain HCQ94_RS01460 PF01595 Cyclin M transmembrane N-terminal domain HCQ94_RS01465 PF01464 Transglycosylase SLT domain HCQ94_RS01465 PF01551 Peptidase family M23 HCQ94_RS01465 PF10145 Phage-related minor tail protein HCQ94_RS01470 PF03009 Glycerophosphoryl diester phosphodiesterase family HCQ94_RS01475 PF02502 Ribose/Galactose Isomerase HCQ94_RS01480 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HCQ94_RS01490 PF05378 Hydantoinase/oxoprolinase N-terminal region HCQ94_RS01490 PF01968 Hydantoinase/oxoprolinase HCQ94_RS01495 PF00717 Peptidase S24-like HCQ94_RS01495 PF01726 LexA DNA binding domain HCQ94_RS01505 PF03477 ATP cone domain HCQ94_RS01510 PF00501 AMP-binding enzyme HCQ94_RS01510 PF13193 AMP-binding enzyme C-terminal domain HCQ94_RS01515 PF13538 UvrD-like helicase C-terminal domain HCQ94_RS01515 PF13538 UvrD-like helicase C-terminal domain HCQ94_RS01525 PF00817 impB/mucB/samB family HCQ94_RS01525 PF11799 impB/mucB/samB family C-terminal domain HCQ94_RS01525 PF11798 IMS family HHH motif HCQ94_RS01535 PF02381 MraZ protein, putative antitoxin-like HCQ94_RS01540 PF01795 MraW methylase family HCQ94_RS01550 PF00905 Penicillin binding protein transpeptidase domain HCQ94_RS01550 PF03717 Penicillin-binding Protein dimerisation domain HCQ94_RS01555 PF02875 Mur ligase family, glutamate ligase domain HCQ94_RS01555 PF01225 Mur ligase family, catalytic domain HCQ94_RS01555 PF08245 Mur ligase middle domain HCQ94_RS01560 PF08245 Mur ligase middle domain HCQ94_RS01560 PF02875 Mur ligase family, glutamate ligase domain HCQ94_RS01560 PF01225 Mur ligase family, catalytic domain HCQ94_RS01565 PF00953 Glycosyl transferase family 4 HCQ94_RS01565 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HCQ94_RS01570 PF08245 Mur ligase middle domain HCQ94_RS01570 PF02875 Mur ligase family, glutamate ligase domain HCQ94_RS01575 PF01098 Cell cycle protein HCQ94_RS01580 PF04101 Glycosyltransferase family 28 C-terminal domain HCQ94_RS01580 PF03033 Glycosyltransferase family 28 N-terminal domain HCQ94_RS01585 PF01225 Mur ligase family, catalytic domain HCQ94_RS01585 PF02875 Mur ligase family, glutamate ligase domain HCQ94_RS01585 PF08245 Mur ligase middle domain HCQ94_RS01595 PF00091 Tubulin/FtsZ family, GTPase domain HCQ94_RS01595 PF12327 FtsZ family, C-terminal domain HCQ94_RS01600 PF02578 Multi-copper polyphenol oxidoreductase laccase HCQ94_RS01605 PF04472 Cell division protein SepF HCQ94_RS01620 PF01252 Signal peptidase (SPase) II HCQ94_RS01625 PF00849 RNA pseudouridylate synthase HCQ94_RS01630 PF02811 PHP domain HCQ94_RS01630 PF14579 Helix-hairpin-helix motif HCQ94_RS01630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HCQ94_RS01630 PF07733 Bacterial DNA polymerase III alpha NTPase domain HCQ94_RS01640 PF01475 Ferric uptake regulator family HCQ94_RS01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HCQ94_RS01645 PF03466 LysR substrate binding domain HCQ94_RS01655 PF01370 NAD dependent epimerase/dehydratase family HCQ94_RS01660 PF03606 C4-dicarboxylate anaerobic carrier HCQ94_RS01665 PF00830 Ribosomal L28 family HCQ94_RS01675 PF00270 DEAD/DEAH box helicase HCQ94_RS01675 PF00271 Helicase conserved C-terminal domain HCQ94_RS01675 PF17191 RecG wedge domain HCQ94_RS01685 PF01467 Cytidylyltransferase-like HCQ94_RS01695 PF02620 Large ribosomal RNA subunit accumulation protein YceD HCQ94_RS01700 PF14622 Ribonuclease-III-like HCQ94_RS01700 PF00035 Double-stranded RNA binding motif HCQ94_RS01710 PF00664 ABC transporter transmembrane region HCQ94_RS01710 PF00005 ABC transporter HCQ94_RS01715 PF00005 ABC transporter HCQ94_RS01715 PF00664 ABC transporter transmembrane region HCQ94_RS01720 PF02322 Cytochrome bd terminal oxidase subunit II HCQ94_RS01725 PF01654 Cytochrome bd terminal oxidase subunit I HCQ94_RS01730 PF10150 Ribonuclease E/G family HCQ94_RS01735 PF00829 Ribosomal prokaryotic L21 protein HCQ94_RS01740 PF01016 Ribosomal L27 protein HCQ94_RS01745 PF09269 Domain of unknown function (DUF1967) HCQ94_RS01745 PF01926 50S ribosome-binding GTPase HCQ94_RS01745 PF01018 GTP1/OBG HCQ94_RS01750 PF00696 Amino acid kinase family HCQ94_RS01750 PF01472 PUA domain HCQ94_RS01755 PF00171 Aldehyde dehydrogenase family HCQ94_RS01760 PF01467 Cytidylyltransferase-like HCQ94_RS01770 PF00300 Histidine phosphatase superfamily (branch 1) HCQ94_RS01815 PF01501 Glycosyl transferase family 8 HCQ94_RS01820 PF08000 Bacterial PH domain HCQ94_RS01825 PF00950 ABC 3 transport family HCQ94_RS01825 PF02742 Iron dependent repressor, metal binding and dimerisation domain HCQ94_RS01830 PF00950 ABC 3 transport family HCQ94_RS01835 PF00005 ABC transporter HCQ94_RS01840 PF01297 Zinc-uptake complex component A periplasmic HCQ94_RS01845 PF01048 Phosphorylase superfamily HCQ94_RS01850 PF00209 Sodium:neurotransmitter symporter family HCQ94_RS01870 PF01649 Ribosomal protein S20 HCQ94_RS01875 PF06421 GTP-binding protein LepA C-terminus HCQ94_RS01875 PF00009 Elongation factor Tu GTP binding domain HCQ94_RS01875 PF00679 Elongation factor G C-terminus HCQ94_RS01880 PF02390 Putative methyltransferase HCQ94_RS01885 PF04055 Radical SAM superfamily HCQ94_RS01890 PF08220 DeoR-like helix-turn-helix domain HCQ94_RS01890 PF01628 HrcA protein C terminal domain HCQ94_RS01895 PF00226 DnaJ domain HCQ94_RS01895 PF00684 DnaJ central domain HCQ94_RS01895 PF01556 DnaJ C terminal domain HCQ94_RS01900 PF04452 RNA methyltransferase HCQ94_RS01905 PF02130 Uncharacterized protein family UPF0054 HCQ94_RS01910 PF01595 Cyclin M transmembrane N-terminal domain HCQ94_RS01910 PF03471 Transporter associated domain HCQ94_RS01910 PF00571 CBS domain HCQ94_RS01915 PF01926 50S ribosome-binding GTPase HCQ94_RS01915 PF07650 KH domain HCQ94_RS01920 PF00881 Nitroreductase family HCQ94_RS01925 PF02565 Recombination protein O C terminal HCQ94_RS01925 PF11967 Recombination protein O N terminal HCQ94_RS01930 PF01783 Ribosomal L32p protein family HCQ94_RS01935 PF03485 Arginyl tRNA synthetase N terminal domain HCQ94_RS01935 PF00750 tRNA synthetases class I (R) HCQ94_RS01935 PF05746 DALR anticodon binding domain HCQ94_RS01940 PF03447 Homoserine dehydrogenase, NAD binding domain HCQ94_RS01940 PF00742 Homoserine dehydrogenase HCQ94_RS01940 PF01842 ACT domain HCQ94_RS01945 PF07497 Rho termination factor, RNA-binding domain HCQ94_RS01945 PF07498 Rho termination factor, N-terminal domain HCQ94_RS01945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCQ94_RS01950 PF01197 Ribosomal protein L31 HCQ94_RS01955 PF00472 RF-1 domain HCQ94_RS01955 PF03462 PCRF domain HCQ94_RS01960 PF17827 PrmC N-terminal domain HCQ94_RS01965 PF01300 Telomere recombination HCQ94_RS01970 PF00953 Glycosyl transferase family 4 HCQ94_RS01980 PF00119 ATP synthase A chain HCQ94_RS01985 PF00137 ATP synthase subunit C HCQ94_RS01990 PF00430 ATP synthase B/B' CF(0) HCQ94_RS01995 PF00213 ATP synthase delta (OSCP) subunit HCQ94_RS02000 PF00306 ATP synthase alpha/beta chain, C terminal domain HCQ94_RS02000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCQ94_RS02000 PF02874 ATP synthase alpha/beta family, beta-barrel domain HCQ94_RS02005 PF00231 ATP synthase HCQ94_RS02010 PF02874 ATP synthase alpha/beta family, beta-barrel domain HCQ94_RS02010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HCQ94_RS02015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HCQ94_RS02025 PF01939 Endonuclease NucS HCQ94_RS02035 PF01546 Peptidase family M20/M25/M40 HCQ94_RS02035 PF07687 Peptidase dimerisation domain HCQ94_RS02065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCQ94_RS02065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HCQ94_RS02065 PF03129 Anticodon binding domain HCQ94_RS02070 PF01230 HIT domain HCQ94_RS02075 PF01066 CDP-alcohol phosphatidyltransferase HCQ94_RS02080 PF03883 Peroxide stress protein YaaA HCQ94_RS02085 PF01680 SOR/SNZ family HCQ94_RS02090 PF00293 NUDIX domain HCQ94_RS02095 PF02779 Transketolase, pyrimidine binding domain HCQ94_RS02095 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HCQ94_RS02095 PF02780 Transketolase, C-terminal domain HCQ94_RS02110 PF01612 3'-5' exonuclease HCQ94_RS02110 PF00570 HRDC domain HCQ94_RS02130 PF00117 Glutamine amidotransferase class-I HCQ94_RS02150 PF01255 Putative undecaprenyl diphosphate synthase HCQ94_RS02155 PF01475 Ferric uptake regulator family HCQ94_RS02160 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCQ94_RS02160 PF03129 Anticodon binding domain HCQ94_RS02170 PF01207 Dihydrouridine synthase (Dus) HCQ94_RS02180 PF03699 Uncharacterised protein family (UPF0182) HCQ94_RS02185 PF01594 AI-2E family transporter HCQ94_RS02200 PF00535 Glycosyl transferase family 2 HCQ94_RS02205 PF03275 UDP-galactopyranose mutase HCQ94_RS02210 PF01061 ABC-2 type transporter HCQ94_RS02215 PF00005 ABC transporter HCQ94_RS02215 PF14524 Wzt C-terminal domain HCQ94_RS02220 PF16363 GDP-mannose 4,6 dehydratase HCQ94_RS02225 PF02467 Transcription factor WhiB HCQ94_RS02235 PF00436 Single-strand binding protein family HCQ94_RS02240 PF12848 ABC transporter HCQ94_RS02240 PF00005 ABC transporter HCQ94_RS02245 PF01431 Peptidase family M13 HCQ94_RS02245 PF05649 Peptidase family M13 HCQ94_RS02250 PF11838 ERAP1-like C-terminal domain HCQ94_RS02250 PF01433 Peptidase family M1 domain HCQ94_RS02255 PF12848 ABC transporter HCQ94_RS02255 PF00005 ABC transporter HCQ94_RS02260 PF00132 Bacterial transferase hexapeptide (six repeats) HCQ94_RS02265 PF00291 Pyridoxal-phosphate dependent enzyme HCQ94_RS02270 PF09186 Domain of unknown function (DUF1949) HCQ94_RS02270 PF01205 Uncharacterized protein family UPF0029 HCQ94_RS02275 PF00294 pfkB family carbohydrate kinase HCQ94_RS02280 PF03747 ADP-ribosylglycohydrolase HCQ94_RS02285 PF00501 AMP-binding enzyme HCQ94_RS02290 PF08264 Anticodon-binding domain of tRNA HCQ94_RS02290 PF00133 tRNA synthetases class I (I, L, M and V) HCQ94_RS02295 PF03807 NADP oxidoreductase coenzyme F420-dependent HCQ94_RS02295 PF14748 Pyrroline-5-carboxylate reductase dimerisation HCQ94_RS02300 PF02887 Pyruvate kinase, alpha/beta domain HCQ94_RS02300 PF00224 Pyruvate kinase, barrel domain HCQ94_RS02310 PF00072 Response regulator receiver domain HCQ94_RS02310 PF03861 ANTAR domain HCQ94_RS02315 PF00476 DNA polymerase family A HCQ94_RS02315 PF01367 5'-3' exonuclease, C-terminal SAM fold HCQ94_RS02315 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HCQ94_RS02320 PF00575 S1 RNA binding domain HCQ94_RS02335 PF00318 Ribosomal protein S2 HCQ94_RS02340 PF00889 Elongation factor TS HCQ94_RS02350 PF03358 NADPH-dependent FMN reductase HCQ94_RS02355 PF10415 Fumarase C C-terminus HCQ94_RS02355 PF00206 Lyase HCQ94_RS02365 PF01702 Queuine tRNA-ribosyltransferase HCQ94_RS02370 PF00324 Amino acid permease HCQ94_RS02380 PF09827 CRISPR associated protein Cas2 HCQ94_RS02385 PF01867 CRISPR associated protein Cas1 HCQ94_RS02390 PF16592 REC lobe of CRISPR-associated endonuclease Cas9 HCQ94_RS02390 PF13395 HNH endonuclease HCQ94_RS02390 PF16595 PAM-interacting domain of CRISPR-associated endonuclease Cas9 HCQ94_RS02390 PF16593 Bridge helix of CRISPR-associated endonuclease Cas9 HCQ94_RS02430 PF00497 Bacterial extracellular solute-binding proteins, family 3 HCQ94_RS02435 PF00005 ABC transporter HCQ94_RS02440 PF00303 Thymidylate synthase HCQ94_RS02445 PF00186 Dihydrofolate reductase HCQ94_RS02455 PF07568 Histidine kinase HCQ94_RS02455 PF12282 Signal transduction histidine kinase HCQ94_RS02455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS02460 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HCQ94_RS02460 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HCQ94_RS02470 PF01458 Uncharacterized protein family (UPF0051) HCQ94_RS02475 PF01458 Uncharacterized protein family (UPF0051) HCQ94_RS02480 PF00355 Rieske [2Fe-2S] domain HCQ94_RS02485 PF00005 ABC transporter HCQ94_RS02490 PF00266 Aminotransferase class-V HCQ94_RS02495 PF01592 NifU-like N terminal domain HCQ94_RS02500 PF00120 Glutamine synthetase, catalytic domain HCQ94_RS02500 PF03951 Glutamine synthetase, beta-Grasp domain HCQ94_RS02510 PF01177 Asp/Glu/Hydantoin racemase HCQ94_RS02515 PF03725 3' exoribonuclease family, domain 2 HCQ94_RS02515 PF01138 3' exoribonuclease family, domain 1 HCQ94_RS02520 PF01725 Ham1 family HCQ94_RS02525 PF13361 UvrD-like helicase C-terminal domain HCQ94_RS02525 PF00570 HRDC domain HCQ94_RS02525 PF00580 UvrD/REP helicase N-terminal domain HCQ94_RS02530 PF00696 Amino acid kinase family HCQ94_RS02535 PF01765 Ribosome recycling factor HCQ94_RS02545 PF04055 Radical SAM superfamily HCQ94_RS02555 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HCQ94_RS02555 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HCQ94_RS02555 PF13288 DXP reductoisomerase C-terminal domain HCQ94_RS02560 PF17820 PDZ domain HCQ94_RS02560 PF02163 Peptidase family M50 HCQ94_RS02565 PF04551 GcpE protein HCQ94_RS02575 PF04073 Aminoacyl-tRNA editing domain HCQ94_RS02575 PF03129 Anticodon binding domain HCQ94_RS02575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCQ94_RS02580 PF01327 Polypeptide deformylase HCQ94_RS02585 PF16193 AAA C-terminal domain HCQ94_RS02585 PF00004 ATPase family associated with various cellular activities (AAA) HCQ94_RS02585 PF12002 MgsA AAA+ ATPase C terminal HCQ94_RS02590 PF01479 S4 domain HCQ94_RS02590 PF00163 Ribosomal protein S4/S9 N-terminal domain HCQ94_RS02605 PF02272 DHHA1 domain HCQ94_RS02605 PF01411 tRNA synthetases class II (A) HCQ94_RS02605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HCQ94_RS02610 PF03652 Holliday junction resolvase HCQ94_RS02630 PF01132 Elongation factor P (EF-P) OB domain HCQ94_RS02630 PF09285 Elongation factor P, C-terminal HCQ94_RS02630 PF08207 Elongation factor P (EF-P) KOW-like domain HCQ94_RS02635 PF01029 NusB family HCQ94_RS02640 PF00625 Guanylate kinase HCQ94_RS02645 PF01192 RNA polymerase Rpb6 HCQ94_RS02650 PF02441 Flavoprotein HCQ94_RS02650 PF04127 DNA / pantothenate metabolism flavoprotein HCQ94_RS02660 PF00551 Formyl transferase HCQ94_RS02660 PF02911 Formyl transferase, C-terminal domain HCQ94_RS02665 PF01029 NusB family HCQ94_RS02665 PF01189 16S rRNA methyltransferase RsmB/F HCQ94_RS02670 PF00834 Ribulose-phosphate 3 epimerase family HCQ94_RS02675 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS02680 PF09084 NMT1/THI5 like HCQ94_RS02685 PF03741 Integral membrane protein TerC family HCQ94_RS02690 PF17760 UvrA interaction domain HCQ94_RS02690 PF00005 ABC transporter HCQ94_RS02690 PF17755 UvrA DNA-binding domain HCQ94_RS02695 PF02151 UvrB/uvrC motif HCQ94_RS02695 PF08459 UvrC Helix-hairpin-helix N-terminal HCQ94_RS02695 PF01541 GIY-YIG catalytic domain HCQ94_RS02705 PF17863 AAA lid domain HCQ94_RS02705 PF07726 ATPase family associated with various cellular activities (AAA) HCQ94_RS02710 PF14258 Domain of unknown function (DUF4350) HCQ94_RS02725 PF00072 Response regulator receiver domain HCQ94_RS02725 PF00486 Transcriptional regulatory protein, C terminal HCQ94_RS02735 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus HCQ94_RS02735 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HCQ94_RS02740 PF01043 SecA preprotein cross-linking domain HCQ94_RS02740 PF07516 SecA Wing and Scaffold domain HCQ94_RS02740 PF07517 SecA DEAD-like domain HCQ94_RS02745 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HCQ94_RS02745 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HCQ94_RS02765 PF00480 ROK family HCQ94_RS02775 PF00365 Phosphofructokinase HCQ94_RS02780 PF00069 Protein kinase domain HCQ94_RS02780 PF03793 PASTA domain HCQ94_RS02785 PF00348 Polyprenyl synthetase HCQ94_RS02795 PF04542 Sigma-70 region 2 HCQ94_RS02795 PF00140 Sigma-70 factor, region 1.2 HCQ94_RS02795 PF04539 Sigma-70 region 3 HCQ94_RS02795 PF04545 Sigma-70, region 4 HCQ94_RS02800 PF01751 Toprim domain HCQ94_RS02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS02800 PF00986 DNA gyrase B subunit, carboxyl terminus HCQ94_RS02800 PF00204 DNA gyrase B HCQ94_RS02805 PF00535 Glycosyl transferase family 2 HCQ94_RS02805 PF01501 Glycosyl transferase family 8 HCQ94_RS02815 PF03989 DNA gyrase C-terminal domain, beta-propeller HCQ94_RS02815 PF00521 DNA gyrase/topoisomerase IV, subunit A HCQ94_RS02850 PF02254 TrkA-N domain HCQ94_RS02850 PF02080 TrkA-C domain HCQ94_RS02855 PF02080 TrkA-C domain HCQ94_RS02855 PF02254 TrkA-N domain HCQ94_RS02860 PF13520 Amino acid permease HCQ94_RS02865 PF08241 Methyltransferase domain HCQ94_RS02870 PF05958 tRNA (Uracil-5-)-methyltransferase HCQ94_RS02880 PF00561 alpha/beta hydrolase fold HCQ94_RS02885 PF00293 NUDIX domain HCQ94_RS02905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HCQ94_RS02905 PF03466 LysR substrate binding domain HCQ94_RS02910 PF14602 Hexapeptide repeat of succinyl-transferase HCQ94_RS02910 PF00132 Bacterial transferase hexapeptide (six repeats) HCQ94_RS02910 PF12464 Maltose acetyltransferase HCQ94_RS02915 PF02129 X-Pro dipeptidyl-peptidase (S15 family) HCQ94_RS02920 PF00746 LPXTG cell wall anchor motif HCQ94_RS02920 PF06458 MucBP domain HCQ94_RS02920 PF04650 YSIRK type signal peptide HCQ94_RS02930 PF01177 Asp/Glu/Hydantoin racemase HCQ94_RS02940 PF00929 Exonuclease HCQ94_RS02940 PF02811 PHP domain HCQ94_RS02940 PF14579 Helix-hairpin-helix motif HCQ94_RS02940 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HCQ94_RS02940 PF07733 Bacterial DNA polymerase III alpha NTPase domain HCQ94_RS02940 PF11490 DNA polymerase III polC-type N-terminus II HCQ94_RS02940 PF01336 OB-fold nucleic acid binding domain HCQ94_RS02950 PF00005 ABC transporter HCQ94_RS02950 PF00664 ABC transporter transmembrane region HCQ94_RS02955 PF00664 ABC transporter transmembrane region HCQ94_RS02955 PF00005 ABC transporter HCQ94_RS02965 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HCQ94_RS02965 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HCQ94_RS02980 PF02938 GAD domain HCQ94_RS02980 PF01336 OB-fold nucleic acid binding domain HCQ94_RS02980 PF00152 tRNA synthetases class II (D, K and N) HCQ94_RS02985 PF02021 Uncharacterised protein family UPF0102 HCQ94_RS02990 PF01078 Magnesium chelatase, subunit ChlI HCQ94_RS02990 PF13335 Magnesium chelatase, subunit ChlI C-terminal HCQ94_RS02995 PF02481 DNA recombination-mediator protein A HCQ94_RS02995 PF17782 DprA winged helix domain HCQ94_RS03000 PF00589 Phage integrase family HCQ94_RS03000 PF02899 Phage integrase, N-terminal SAM-like domain HCQ94_RS03015 PF13614 AAA domain HCQ94_RS03020 PF00849 RNA pseudouridylate synthase HCQ94_RS03020 PF01479 S4 domain HCQ94_RS03025 PF01926 50S ribosome-binding GTPase HCQ94_RS03025 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HCQ94_RS03030 PF00005 ABC transporter HCQ94_RS03030 PF00664 ABC transporter transmembrane region HCQ94_RS03035 PF00664 ABC transporter transmembrane region HCQ94_RS03035 PF00005 ABC transporter HCQ94_RS03040 PF12728 Helix-turn-helix domain HCQ94_RS03050 PF13397 RNA polymerase-binding protein HCQ94_RS03055 PF00561 alpha/beta hydrolase fold HCQ94_RS03060 PF13411 MerR HTH family regulatory protein HCQ94_RS03070 PF00498 FHA domain HCQ94_RS03075 PF11838 ERAP1-like C-terminal domain HCQ94_RS03075 PF01433 Peptidase family M1 domain HCQ94_RS03080 PF02416 mttA/Hcf106 family HCQ94_RS03085 PF00902 Sec-independent protein translocase protein (TatC) HCQ94_RS03090 PF03239 Iron permease FTR1 family HCQ94_RS03095 PF10518 TAT (twin-arginine translocation) pathway signal sequence HCQ94_RS03095 PF04261 Dyp-type peroxidase family HCQ94_RS03100 PF09375 Imelysin HCQ94_RS03120 PF04343 Protein of unknown function, DUF488 HCQ94_RS03125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HCQ94_RS03140 PF00005 ABC transporter HCQ94_RS03140 PF00571 CBS domain HCQ94_RS03145 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS03150 PF17191 RecG wedge domain HCQ94_RS03150 PF00270 DEAD/DEAH box helicase HCQ94_RS03150 PF13749 Putative ATP-dependent DNA helicase recG C-terminal HCQ94_RS03165 PF13460 NAD(P)H-binding HCQ94_RS03165 PF11066 Protein of unknown function (DUF2867) HCQ94_RS03170 PF00196 Bacterial regulatory proteins, luxR family HCQ94_RS03170 PF00072 Response regulator receiver domain HCQ94_RS03175 PF07730 Histidine kinase HCQ94_RS03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS03185 PF00005 ABC transporter HCQ94_RS03190 PF01381 Helix-turn-helix HCQ94_RS03215 PF00005 ABC transporter HCQ94_RS03225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS03225 PF00512 His Kinase A (phospho-acceptor) domain HCQ94_RS03225 PF00672 HAMP domain HCQ94_RS03230 PF00072 Response regulator receiver domain HCQ94_RS03230 PF00486 Transcriptional regulatory protein, C terminal HCQ94_RS03270 PF05958 tRNA (Uracil-5-)-methyltransferase HCQ94_RS03270 PF01938 TRAM domain HCQ94_RS03275 PF13411 MerR HTH family regulatory protein HCQ94_RS03305 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HCQ94_RS03305 PF03483 B3/4 domain HCQ94_RS03305 PF03484 tRNA synthetase B5 domain HCQ94_RS03305 PF03147 Ferredoxin-fold anticodon binding domain HCQ94_RS03305 PF01588 Putative tRNA binding domain HCQ94_RS03310 PF01409 tRNA synthetases class II core domain (F) HCQ94_RS03310 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HCQ94_RS03325 PF00005 ABC transporter HCQ94_RS03335 PF00795 Carbon-nitrogen hydrolase HCQ94_RS03335 PF02540 NAD synthase HCQ94_RS03340 PF02548 Ketopantoate hydroxymethyltransferase HCQ94_RS03345 PF00557 Metallopeptidase family M24 HCQ94_RS03350 PF03551 Transcriptional regulator PadR-like family HCQ94_RS03360 PF00326 Prolyl oligopeptidase family HCQ94_RS03365 PF13185 GAF domain HCQ94_RS03375 PF00733 Asparagine synthase HCQ94_RS03375 PF13537 Glutamine amidotransferase domain HCQ94_RS03395 PF07690 Major Facilitator Superfamily HCQ94_RS03400 PF03880 DbpA RNA binding domain HCQ94_RS03400 PF00270 DEAD/DEAH box helicase HCQ94_RS03400 PF00271 Helicase conserved C-terminal domain HCQ94_RS03405 PF00753 Metallo-beta-lactamase superfamily HCQ94_RS03410 PF07690 Major Facilitator Superfamily HCQ94_RS03415 PF00585 C-terminal regulatory domain of Threonine dehydratase HCQ94_RS03415 PF00291 Pyridoxal-phosphate dependent enzyme HCQ94_RS03420 PF00929 Exonuclease HCQ94_RS03425 PF08275 DNA primase catalytic core, N-terminal domain HCQ94_RS03425 PF01807 CHC2 zinc finger HCQ94_RS03425 PF13662 Toprim domain HCQ94_RS03425 PF08278 DNA primase DnaG DnaB-binding HCQ94_RS03425 PF10410 DnaB-helicase binding domain of primase HCQ94_RS03430 PF03993 Domain of Unknown Function (DUF349) HCQ94_RS03435 PF13291 ACT domain HCQ94_RS03435 PF04607 Region found in RelA / SpoT proteins HCQ94_RS03435 PF02824 TGS domain HCQ94_RS03440 PF00156 Phosphoribosyl transferase domain HCQ94_RS03445 PF02355 Protein export membrane protein HCQ94_RS03445 PF07549 SecD/SecF GG Motif HCQ94_RS03450 PF02355 Protein export membrane protein HCQ94_RS03450 PF07549 SecD/SecF GG Motif HCQ94_RS03460 PF17864 RuvB AAA lid domain HCQ94_RS03460 PF05496 Holliday junction DNA helicase RuvB P-loop domain HCQ94_RS03460 PF05491 RuvB C-terminal winged helix domain HCQ94_RS03465 PF01330 RuvA N terminal domain HCQ94_RS03465 PF07499 RuvA, C-terminal domain HCQ94_RS03470 PF02075 Crossover junction endodeoxyribonuclease RuvC HCQ94_RS03475 PF01709 Transcriptional regulator HCQ94_RS03485 PF01174 SNO glutamine amidotransferase family HCQ94_RS03490 PF02151 UvrB/uvrC motif HCQ94_RS03490 PF04851 Type III restriction enzyme, res subunit HCQ94_RS03490 PF12344 Ultra-violet resistance protein B HCQ94_RS03490 PF00271 Helicase conserved C-terminal domain HCQ94_RS03490 PF17757 UvrB interaction domain HCQ94_RS03495 PF01121 Dephospho-CoA kinase HCQ94_RS03505 PF01048 Phosphorylase superfamily HCQ94_RS03530 PF00270 DEAD/DEAH box helicase HCQ94_RS03530 PF08148 DSHCT (NUC185) domain HCQ94_RS03530 PF00271 Helicase conserved C-terminal domain HCQ94_RS03550 PF00579 tRNA synthetases class I (W and Y) HCQ94_RS03555 PF01316 Arginine repressor, DNA binding domain HCQ94_RS03555 PF02863 Arginine repressor, C-terminal domain HCQ94_RS03570 PF00486 Transcriptional regulatory protein, C terminal HCQ94_RS03570 PF00072 Response regulator receiver domain HCQ94_RS03575 PF00672 HAMP domain HCQ94_RS03575 PF00512 His Kinase A (phospho-acceptor) domain HCQ94_RS03575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS03585 PF00334 Nucleoside diphosphate kinase HCQ94_RS03590 PF01066 CDP-alcohol phosphatidyltransferase HCQ94_RS03595 PF02875 Mur ligase family, glutamate ligase domain HCQ94_RS03595 PF08245 Mur ligase middle domain HCQ94_RS03600 PF08264 Anticodon-binding domain of tRNA HCQ94_RS03600 PF00133 tRNA synthetases class I (I, L, M and V) HCQ94_RS03610 PF01790 Prolipoprotein diacylglyceryl transferase HCQ94_RS03620 PF08704 tRNA methyltransferase complex GCD14 subunit HCQ94_RS03625 PF13419 Haloacid dehalogenase-like hydrolase HCQ94_RS03630 PF02673 Bacitracin resistance protein BacA HCQ94_RS03640 PF12848 ABC transporter HCQ94_RS03640 PF00005 ABC transporter HCQ94_RS03645 PF00156 Phosphoribosyl transferase domain HCQ94_RS03650 PF01180 Dihydroorotate dehydrogenase HCQ94_RS03655 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HCQ94_RS03660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HCQ94_RS03665 PF01979 Amidohydrolase family HCQ94_RS03670 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HCQ94_RS03670 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HCQ94_RS03675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HCQ94_RS03675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HCQ94_RS03680 PF01883 Iron-sulfur cluster assembly protein HCQ94_RS03685 PF10431 C-terminal, D2-small domain, of ClpB protein HCQ94_RS03685 PF06689 ClpX C4-type zinc finger HCQ94_RS03685 PF07724 AAA domain (Cdc48 subfamily) HCQ94_RS03690 PF00574 Clp protease HCQ94_RS03695 PF00574 Clp protease HCQ94_RS03700 PF05697 Bacterial trigger factor protein (TF) HCQ94_RS03700 PF05698 Bacterial trigger factor protein (TF) C-terminus HCQ94_RS03700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HCQ94_RS03760 PF02899 Phage integrase, N-terminal SAM-like domain HCQ94_RS03760 PF00589 Phage integrase family HCQ94_RS03765 PF00342 Phosphoglucose isomerase HCQ94_RS03775 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS03780 PF00005 ABC transporter HCQ94_RS03785 PF08335 GlnD PII-uridylyltransferase HCQ94_RS03785 PF03710 Glutamate-ammonia ligase adenylyltransferase HCQ94_RS03815 PF06418 CTP synthase N-terminus HCQ94_RS03815 PF00117 Glutamine amidotransferase class-I HCQ94_RS03820 PF00534 Glycosyl transferases group 1 HCQ94_RS03820 PF13439 Glycosyltransferase Family 4 HCQ94_RS03825 PF03023 Lipid II flippase MurJ HCQ94_RS03835 PF11382 Copper transport outer membrane protein, MctB HCQ94_RS03845 PF13476 AAA domain HCQ94_RS03850 PF01513 ATP-NAD kinase HCQ94_RS03855 PF01479 S4 domain HCQ94_RS03855 PF01728 FtsJ-like methyltransferase HCQ94_RS03860 PF13344 Haloacid dehalogenase-like hydrolase HCQ94_RS03860 PF18407 GCN5-related N-acetyltransferase like domain HCQ94_RS03880 PF00300 Histidine phosphatase superfamily (branch 1) HCQ94_RS03880 PF13456 Reverse transcriptase-like HCQ94_RS03890 PF01784 NIF3 (NGG1p interacting factor 3) HCQ94_RS03905 PF17831 Pyruvate dehydrogenase E1 component middle domain HCQ94_RS03905 PF00456 Transketolase, thiamine diphosphate binding domain HCQ94_RS03915 PF00578 AhpC/TSA family HCQ94_RS03920 PF00586 AIR synthase related protein, N-terminal domain HCQ94_RS03920 PF02769 AIR synthase related protein, C-terminal domain HCQ94_RS03920 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HCQ94_RS03925 PF02844 Phosphoribosylglycinamide synthetase, N domain HCQ94_RS03925 PF02843 Phosphoribosylglycinamide synthetase, C domain HCQ94_RS03925 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HCQ94_RS03930 PF02142 MGS-like domain HCQ94_RS03930 PF01808 AICARFT/IMPCHase bienzyme HCQ94_RS03935 PF00551 Formyl transferase HCQ94_RS03940 PF02769 AIR synthase related protein, C-terminal domain HCQ94_RS03940 PF00586 AIR synthase related protein, N-terminal domain HCQ94_RS03945 PF00156 Phosphoribosyl transferase domain HCQ94_RS03950 PF01259 SAICAR synthetase HCQ94_RS03955 PF00206 Lyase HCQ94_RS03955 PF10397 Adenylosuccinate lyase C-terminus HCQ94_RS03960 PF00731 AIR carboxylase HCQ94_RS03965 PF03840 Preprotein translocase SecG subunit HCQ94_RS03970 PF00121 Triosephosphate isomerase HCQ94_RS03975 PF00162 Phosphoglycerate kinase HCQ94_RS03980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HCQ94_RS03980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HCQ94_RS03985 PF14527 WhiA LAGLIDADG-like domain HCQ94_RS03985 PF10298 WhiA N-terminal LAGLIDADG-like domain HCQ94_RS03985 PF02650 WhiA C-terminal HTH domain HCQ94_RS03990 PF01933 Uncharacterised protein family UPF0052 HCQ94_RS03995 PF03668 P-loop ATPase protein family HCQ94_RS04000 PF10611 Protein of unknown function (DUF2469) HCQ94_RS04005 PF01351 Ribonuclease HII HCQ94_RS04010 PF10502 Signal peptidase, peptidase S26 HCQ94_RS04015 PF01245 Ribosomal protein L19 HCQ94_RS04020 PF01746 tRNA (Guanine-1)-methyltransferase HCQ94_RS04025 PF05239 PRC-barrel domain HCQ94_RS04025 PF01782 RimM N-terminal domain HCQ94_RS04035 PF00886 Ribosomal protein S16 HCQ94_RS04040 PF01979 Amidohydrolase family HCQ94_RS04045 PF02978 Signal peptide binding domain HCQ94_RS04045 PF02881 SRP54-type protein, helical bundle domain HCQ94_RS04045 PF00448 SRP54-type protein, GTPase domain HCQ94_RS04050 PF00448 SRP54-type protein, GTPase domain HCQ94_RS04050 PF02881 SRP54-type protein, helical bundle domain HCQ94_RS04060 PF00293 NUDIX domain HCQ94_RS04065 PF00248 Aldo/keto reductase family HCQ94_RS04090 PF00588 SpoU rRNA Methylase family HCQ94_RS04095 PF03601 Conserved hypothetical protein 698 HCQ94_RS04100 PF00883 Cytosol aminopeptidase family, catalytic domain HCQ94_RS04100 PF02789 Cytosol aminopeptidase family, N-terminal domain HCQ94_RS04105 PF07992 Pyridine nucleotide-disulphide oxidoreductase HCQ94_RS04105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HCQ94_RS04110 PF00364 Biotin-requiring enzyme HCQ94_RS04110 PF02817 e3 binding domain HCQ94_RS04110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HCQ94_RS04125 PF13829 Domain of unknown function (DUF4191) HCQ94_RS04130 PF00120 Glutamine synthetase, catalytic domain HCQ94_RS04130 PF03951 Glutamine synthetase, beta-Grasp domain HCQ94_RS04135 PF00156 Phosphoribosyl transferase domain HCQ94_RS04140 PF01425 Amidase HCQ94_RS04145 PF02773 S-adenosylmethionine synthetase, C-terminal domain HCQ94_RS04145 PF02772 S-adenosylmethionine synthetase, central domain HCQ94_RS04145 PF00438 S-adenosylmethionine synthetase, N-terminal domain HCQ94_RS04150 PF10415 Fumarase C C-terminus HCQ94_RS04150 PF00206 Lyase HCQ94_RS04175 PF01966 HD domain HCQ94_RS04175 PF13286 Phosphohydrolase-associated domain HCQ94_RS04195 PF04851 Type III restriction enzyme, res subunit HCQ94_RS04210 PF00005 ABC transporter HCQ94_RS04215 PF00216 Bacterial DNA-binding protein HCQ94_RS04220 PF00950 ABC 3 transport family HCQ94_RS04225 PF00005 ABC transporter HCQ94_RS04235 PF01297 Zinc-uptake complex component A periplasmic HCQ94_RS04250 PF02545 Maf-like protein HCQ94_RS04260 PF00037 4Fe-4S binding domain HCQ94_RS04270 PF04294 VanW like protein HCQ94_RS04275 PF14492 Elongation Factor G, domain II HCQ94_RS04275 PF03144 Elongation factor Tu domain 2 HCQ94_RS04275 PF00009 Elongation factor Tu GTP binding domain HCQ94_RS04275 PF00679 Elongation factor G C-terminus HCQ94_RS04280 PF01161 Phosphatidylethanolamine-binding protein HCQ94_RS04285 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS04290 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS04295 PF01547 Bacterial extracellular solute-binding protein HCQ94_RS04300 PF00056 lactate/malate dehydrogenase, NAD binding domain HCQ94_RS04300 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HCQ94_RS04350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HCQ94_RS04350 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HCQ94_RS04355 PF01521 Iron-sulphur cluster biosynthesis HCQ94_RS04365 PF00210 Ferritin-like domain HCQ94_RS04370 PF01230 HIT domain HCQ94_RS04390 PF01263 Aldose 1-epimerase HCQ94_RS04405 PF00266 Aminotransferase class-V HCQ94_RS04410 PF01012 Electron transfer flavoprotein domain HCQ94_RS04410 PF00766 Electron transfer flavoprotein FAD-binding domain HCQ94_RS04415 PF01012 Electron transfer flavoprotein domain HCQ94_RS04420 PF00892 EamA-like transporter family HCQ94_RS04425 PF00579 tRNA synthetases class I (W and Y) HCQ94_RS04430 PF00085 Thioredoxin HCQ94_RS04445 PF11241 Protein of unknown function (DUF3043) HCQ94_RS04450 PF00378 Enoyl-CoA hydratase/isomerase HCQ94_RS04455 PF13193 AMP-binding enzyme C-terminal domain HCQ94_RS04455 PF00501 AMP-binding enzyme HCQ94_RS04460 PF03061 Thioesterase superfamily HCQ94_RS04470 PF02629 CoA binding domain HCQ94_RS04470 PF00549 CoA-ligase HCQ94_RS04475 PF00549 CoA-ligase HCQ94_RS04475 PF08442 ATP-grasp domain HCQ94_RS04480 PF13361 UvrD-like helicase C-terminal domain HCQ94_RS04480 PF00580 UvrD/REP helicase N-terminal domain HCQ94_RS04485 PF00196 Bacterial regulatory proteins, luxR family HCQ94_RS04485 PF00072 Response regulator receiver domain HCQ94_RS04505 PF00291 Pyridoxal-phosphate dependent enzyme HCQ94_RS04515 PF00962 Adenosine/AMP deaminase HCQ94_RS04520 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region HCQ94_RS04520 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region HCQ94_RS04520 PF07501 G5 domain HCQ94_RS04520 PF04650 YSIRK type signal peptide HCQ94_RS04525 PF02028 BCCT, betaine/carnitine/choline family transporter HCQ94_RS04545 PF00171 Aldehyde dehydrogenase family HCQ94_RS04555 PF00145 C-5 cytosine-specific DNA methylase HCQ94_RS04575 PF02540 NAD synthase HCQ94_RS04575 PF00117 Glutamine amidotransferase class-I HCQ94_RS04575 PF00958 GMP synthase C terminal domain HCQ94_RS04590 PF01515 Phosphate acetyl/butaryl transferase HCQ94_RS04590 PF07085 DRTGG domain HCQ94_RS04610 PF03816 Cell envelope-related transcriptional attenuator domain HCQ94_RS04615 PF03816 Cell envelope-related transcriptional attenuator domain HCQ94_RS04620 PF00588 SpoU rRNA Methylase family HCQ94_RS04620 PF08032 RNA 2'-O ribose methyltransferase substrate binding HCQ94_RS04625 PF00453 Ribosomal protein L20 HCQ94_RS04630 PF01632 Ribosomal protein L35 HCQ94_RS04635 PF00707 Translation initiation factor IF-3, C-terminal domain HCQ94_RS04635 PF05198 Translation initiation factor IF-3, N-terminal domain HCQ94_RS04655 PF00512 His Kinase A (phospho-acceptor) domain HCQ94_RS04655 PF13755 Sensor N-terminal transmembrane domain HCQ94_RS04655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS04655 PF13756 Stimulus-sensing domain HCQ94_RS04655 PF00672 HAMP domain HCQ94_RS04660 PF00072 Response regulator receiver domain HCQ94_RS04660 PF00486 Transcriptional regulatory protein, C terminal HCQ94_RS04675 PF00561 alpha/beta hydrolase fold HCQ94_RS04685 PF07478 D-ala D-ala ligase C-terminus HCQ94_RS04685 PF01820 D-ala D-ala ligase N-terminus HCQ94_RS04695 PF01553 Acyltransferase HCQ94_RS04705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HCQ94_RS04725 PF13439 Glycosyltransferase Family 4 HCQ94_RS04725 PF00534 Glycosyl transferases group 1 HCQ94_RS04730 PF01042 Endoribonuclease L-PSP HCQ94_RS04755 PF00749 tRNA synthetases class I (E and Q), catalytic domain HCQ94_RS04760 PF00155 Aminotransferase class I and II HCQ94_RS04770 PF01235 Sodium:alanine symporter family HCQ94_RS04775 PF01235 Sodium:alanine symporter family HCQ94_RS04780 PF01235 Sodium:alanine symporter family HCQ94_RS04785 PF00920 Dehydratase family HCQ94_RS04790 PF01063 Amino-transferase class IV HCQ94_RS04795 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HCQ94_RS04795 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HCQ94_RS04800 PF10369 Small subunit of acetolactate synthase HCQ94_RS04805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HCQ94_RS04805 PF00205 Thiamine pyrophosphate enzyme, central domain HCQ94_RS04805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HCQ94_RS04820 PF00390 Malic enzyme, N-terminal domain HCQ94_RS04820 PF03949 Malic enzyme, NAD binding domain HCQ94_RS04825 PF02934 GatB/GatE catalytic domain HCQ94_RS04825 PF02637 GatB domain HCQ94_RS04830 PF01425 Amidase HCQ94_RS04835 PF02686 Glu-tRNAGln amidotransferase C subunit HCQ94_RS04840 PF13396 Phospholipase_D-nuclease N-terminal HCQ94_RS04840 PF13091 PLD-like domain HCQ94_RS04845 PF03120 NAD-dependent DNA ligase OB-fold domain HCQ94_RS04845 PF01653 NAD-dependent DNA ligase adenylation domain HCQ94_RS04845 PF00533 BRCA1 C Terminus (BRCT) domain HCQ94_RS04845 PF12826 Helix-hairpin-helix motif HCQ94_RS04845 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HCQ94_RS04850 PF01580 FtsK/SpoIIIE family HCQ94_RS04865 PF01757 Acyltransferase family HCQ94_RS04875 PF13307 Helicase C-terminal domain HCQ94_RS04880 PF05175 Methyltransferase small domain HCQ94_RS04880 PF08468 Methyltransferase small domain N-terminal HCQ94_RS04900 PF00919 Uncharacterized protein family UPF0004 HCQ94_RS04900 PF04055 Radical SAM superfamily HCQ94_RS04905 PF02464 Competence-damaged protein HCQ94_RS04905 PF18146 Damage-inducible protein CinA KH domain HCQ94_RS04905 PF00994 Probable molybdopterin binding domain HCQ94_RS04910 PF02631 RecX family HCQ94_RS04915 PF00154 recA bacterial DNA recombination protein HCQ94_RS04935 PF01066 CDP-alcohol phosphatidyltransferase HCQ94_RS04940 PF17854 FtsK alpha domain HCQ94_RS04940 PF09397 Ftsk gamma domain HCQ94_RS04940 PF01580 FtsK/SpoIIIE family HCQ94_RS04950 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain HCQ94_RS04950 PF17770 Ribonuclease J C-terminal domain HCQ94_RS04950 PF12706 Beta-lactamase superfamily domain HCQ94_RS04955 PF00675 Insulinase (Peptidase family M16) HCQ94_RS04955 PF05193 Peptidase M16 inactive domain HCQ94_RS04960 PF00013 KH domain HCQ94_RS04960 PF00575 S1 RNA binding domain HCQ94_RS04960 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HCQ94_RS04960 PF01138 3' exoribonuclease family, domain 1 HCQ94_RS04965 PF00312 Ribosomal protein S15 HCQ94_RS04970 PF01687 Riboflavin kinase HCQ94_RS04970 PF06574 FAD synthetase HCQ94_RS04975 PF09142 tRNA Pseudouridine synthase II, C terminal HCQ94_RS04975 PF16198 tRNA pseudouridylate synthase B C-terminal domain HCQ94_RS04975 PF01509 TruB family pseudouridylate synthase (N terminal domain) HCQ94_RS04990 PF02033 Ribosome-binding factor A HCQ94_RS04995 PF11987 Translation-initiation factor 2 HCQ94_RS04995 PF04760 Translation initiation factor IF-2, N-terminal region HCQ94_RS04995 PF11987 Translation-initiation factor 2 HCQ94_RS04995 PF00009 Elongation factor Tu GTP binding domain HCQ94_RS04995 PF00009 Elongation factor Tu GTP binding domain HCQ94_RS04995 PF04760 Translation initiation factor IF-2, N-terminal region HCQ94_RS05005 PF13184 NusA-like KH domain HCQ94_RS05005 PF08529 NusA N-terminal domain HCQ94_RS05010 PF02576 RimP N-terminal domain HCQ94_RS05010 PF17384 RimP C-terminal SH3 domain HCQ94_RS05015 PF05922 Peptidase inhibitor I9 HCQ94_RS05015 PF00082 Subtilase family HCQ94_RS05020 PF00082 Subtilase family HCQ94_RS05020 PF05922 Peptidase inhibitor I9 HCQ94_RS05025 PF00082 Subtilase family HCQ94_RS05025 PF05922 Peptidase inhibitor I9 HCQ94_RS05030 PF01464 Transglycosylase SLT domain HCQ94_RS05055 PF01979 Amidohydrolase family HCQ94_RS05055 PF13382 Adenine deaminase C-terminal domain HCQ94_RS05065 PF02361 Cobalt transport protein HCQ94_RS05070 PF12558 ATP-binding cassette cobalt transporter HCQ94_RS05070 PF00005 ABC transporter HCQ94_RS05075 PF07155 ECF-type riboflavin transporter, S component HCQ94_RS05085 PF01925 Sulfite exporter TauE/SafE HCQ94_RS05110 PF01668 SmpB protein HCQ94_RS05115 PF18075 FtsX extracellular domain HCQ94_RS05115 PF02687 FtsX-like permease family HCQ94_RS05120 PF00005 ABC transporter HCQ94_RS05125 PF00472 RF-1 domain HCQ94_RS05125 PF03462 PCRF domain HCQ94_RS05130 PF01636 Phosphotransferase enzyme family HCQ94_RS05150 PF13361 UvrD-like helicase C-terminal domain HCQ94_RS05150 PF00580 UvrD/REP helicase N-terminal domain HCQ94_RS05165 PF01914 MarC family integral membrane protein HCQ94_RS05170 PF02811 PHP domain HCQ94_RS05170 PF14579 Helix-hairpin-helix motif HCQ94_RS05170 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HCQ94_RS05170 PF07733 Bacterial DNA polymerase III alpha NTPase domain HCQ94_RS05175 PF00557 Metallopeptidase family M24 HCQ94_RS05175 PF05195 Aminopeptidase P, N-terminal domain HCQ94_RS05180 PF10282 Lactonase, 7-bladed beta-propeller HCQ94_RS05185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HCQ94_RS05185 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain HCQ94_RS05190 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain HCQ94_RS05190 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain HCQ94_RS05195 PF01596 O-methyltransferase HCQ94_RS05200 PF02789 Cytosol aminopeptidase family, N-terminal domain HCQ94_RS05200 PF00883 Cytosol aminopeptidase family, catalytic domain HCQ94_RS05205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HCQ94_RS05205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HCQ94_RS05205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HCQ94_RS05205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HCQ94_RS05210 PF02608 ABC transporter substrate-binding protein PnrA-like HCQ94_RS05215 PF00288 GHMP kinases N terminal domain HCQ94_RS05215 PF08544 GHMP kinases C terminal HCQ94_RS05215 PF10509 Galactokinase galactose-binding signature HCQ94_RS05220 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HCQ94_RS05220 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HCQ94_RS05230 PF04650 YSIRK type signal peptide HCQ94_RS05230 PF07564 Domain of Unknown Function (DUF1542) HCQ94_RS05230 PF01468 GA module HCQ94_RS05230 PF07564 Domain of Unknown Function (DUF1542) HCQ94_RS05230 PF01468 GA module HCQ94_RS05230 PF04650 YSIRK type signal peptide HCQ94_RS05235 PF00118 TCP-1/cpn60 chaperonin family HCQ94_RS05250 PF03167 Uracil DNA glycosylase superfamily HCQ94_RS05255 PF00209 Sodium:neurotransmitter symporter family HCQ94_RS05265 PF00561 alpha/beta hydrolase fold HCQ94_RS05275 PF09924 Uncharacterised conserved protein (DUF2156) HCQ94_RS05275 PF01336 OB-fold nucleic acid binding domain HCQ94_RS05275 PF16995 Transmembrane region of lysyl-tRNA synthetase HCQ94_RS05275 PF00152 tRNA synthetases class II (D, K and N) HCQ94_RS05290 PF03793 PASTA domain HCQ94_RS05290 PF00069 Protein kinase domain HCQ94_RS05295 PF00005 ABC transporter HCQ94_RS05295 PF17912 MalK OB fold domain HCQ94_RS05315 PF01116 Fructose-bisphosphate aldolase class-II HCQ94_RS05320 PF01658 Myo-inositol-1-phosphate synthase HCQ94_RS05330 PF00005 ABC transporter HCQ94_RS05335 PF00542 Ribosomal protein L7/L12 C-terminal domain HCQ94_RS05335 PF16320 Ribosomal protein L7/L12 dimerisation domain HCQ94_RS05340 PF00466 Ribosomal protein L10 HCQ94_RS05355 PF00687 Ribosomal protein L1p/L10e family HCQ94_RS05360 PF03946 Ribosomal protein L11, N-terminal domain HCQ94_RS05360 PF00298 Ribosomal protein L11, RNA binding domain HCQ94_RS05365 PF02357 Transcription termination factor nusG HCQ94_RS05370 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HCQ94_RS05380 PF00155 Aminotransferase class I and II HCQ94_RS05385 PF00583 Acetyltransferase (GNAT) family HCQ94_RS05390 PF01565 FAD binding domain HCQ94_RS05390 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HCQ94_RS05400 PF00471 Ribosomal protein L33 HCQ94_RS05425 PF04461 Protein of unknown function (DUF520) HCQ94_RS05430 PF01435 Peptidase family M48 HCQ94_RS05440 PF07992 Pyridine nucleotide-disulphide oxidoreductase HCQ94_RS05445 PF00348 Polyprenyl synthetase HCQ94_RS05450 PF00361 Proton-conducting membrane transporter HCQ94_RS05455 PF00361 Proton-conducting membrane transporter HCQ94_RS05460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HCQ94_RS05460 PF00361 Proton-conducting membrane transporter HCQ94_RS05465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HCQ94_RS05470 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HCQ94_RS05475 PF12838 4Fe-4S dicluster domain HCQ94_RS05480 PF00146 NADH dehydrogenase HCQ94_RS05485 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HCQ94_RS05485 PF01568 Molydopterin dinucleotide binding domain HCQ94_RS05485 PF00384 Molybdopterin oxidoreductase HCQ94_RS05490 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HCQ94_RS05490 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HCQ94_RS05490 PF10531 SLBB domain HCQ94_RS05500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HCQ94_RS05505 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HCQ94_RS05510 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HCQ94_RS05515 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HCQ94_RS05520 PF01209 ubiE/COQ5 methyltransferase family HCQ94_RS05525 PF13180 PDZ domain HCQ94_RS05530 PF08946 Osmosensory transporter coiled coil HCQ94_RS05530 PF00083 Sugar (and other) transporter HCQ94_RS05535 PF18127 Domain of unknown function (DUF5598) HCQ94_RS05535 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HCQ94_RS05545 PF02633 Creatinine amidohydrolase HCQ94_RS05560 PF00696 Amino acid kinase family HCQ94_RS05565 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HCQ94_RS05565 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HCQ94_RS05580 PF01040 UbiA prenyltransferase family HCQ94_RS05595 PF12728 Helix-turn-helix domain HCQ94_RS05600 PF02080 TrkA-C domain HCQ94_RS05600 PF02254 TrkA-N domain HCQ94_RS05610 PF00300 Histidine phosphatase superfamily (branch 1) HCQ94_RS05615 PF02386 Cation transport protein HCQ94_RS05620 PF06745 KaiC HCQ94_RS05620 PF18073 Rubredoxin metal binding domain HCQ94_RS05630 PF12826 Helix-hairpin-helix motif HCQ94_RS05630 PF02457 DisA bacterial checkpoint controller nucleotide-binding HCQ94_RS05630 PF10635 DisA bacterial checkpoint controller linker region HCQ94_RS05645 PF02152 Dihydroneopterin aldolase HCQ94_RS05650 PF00809 Pterin binding enzyme HCQ94_RS05655 PF01227 GTP cyclohydrolase I HCQ94_RS05660 PF17862 AAA+ lid domain HCQ94_RS05660 PF01434 Peptidase family M41 HCQ94_RS05660 PF00004 ATPase family associated with various cellular activities (AAA) HCQ94_RS05665 PF00156 Phosphoribosyl transferase domain HCQ94_RS05670 PF00719 Inorganic pyrophosphatase HCQ94_RS05680 PF09179 TilS substrate binding domain HCQ94_RS05680 PF01171 PP-loop family HCQ94_RS05685 PF00877 NlpC/P60 family HCQ94_RS05710 PF14437 MafB19-like deaminase HCQ94_RS05715 PF03180 NLPA lipoprotein HCQ94_RS05720 PF00528 Binding-protein-dependent transport system inner membrane component HCQ94_RS05725 PF09383 NIL domain HCQ94_RS05725 PF00005 ABC transporter HCQ94_RS05735 PF00005 ABC transporter HCQ94_RS05740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HCQ94_RS05745 PF00486 Transcriptional regulatory protein, C terminal HCQ94_RS05745 PF00072 Response regulator receiver domain HCQ94_RS05775 PF07685 CobB/CobQ-like glutamine amidotransferase domain HCQ94_RS05780 PF08245 Mur ligase middle domain HCQ94_RS05780 PF02875 Mur ligase family, glutamate ligase domain HCQ94_RS05780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HCQ94_RS05795 PF02403 Seryl-tRNA synthetase N-terminal domain HCQ94_RS05795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HCQ94_RS05805 PF02142 MGS-like domain HCQ94_RS05805 PF00781 Diacylglycerol kinase catalytic domain HCQ94_RS05810 PF00535 Glycosyl transferase family 2 HCQ94_RS05820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HCQ94_RS05820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HCQ94_RS05820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HCQ94_RS05820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HCQ94_RS05845 PF03458 UPF0126 domain HCQ94_RS05855 PF00005 ABC transporter HCQ94_RS05860 PF01032 FecCD transport family HCQ94_RS05875 PF13393 Histidyl-tRNA synthetase HCQ94_RS05880 PF12169 DNA polymerase III subunits gamma and tau domain III HCQ94_RS05885 PF02223 Thymidylate kinase HCQ94_RS05890 PF01131 DNA topoisomerase HCQ94_RS05890 PF01751 Toprim domain HCQ94_RS05890 PF13368 Topoisomerase C-terminal repeat HCQ94_RS05895 PF05175 Methyltransferase small domain HCQ94_RS05895 PF17827 PrmC N-terminal domain HCQ94_RS05925 PF00437 Type II/IV secretion system protein HCQ94_RS05955 PF00107 Zinc-binding dehydrogenase HCQ94_RS05955 PF08240 Alcohol dehydrogenase GroES-like domain HCQ94_RS05965 PF00149 Calcineurin-like phosphoesterase HCQ94_RS05970 PF00912 Transglycosylase HCQ94_RS05970 PF00905 Penicillin binding protein transpeptidase domain HCQ94_RS05980 PF01042 Endoribonuclease L-PSP HCQ94_RS05985 PF13545 Crp-like helix-turn-helix domain HCQ94_RS05985 PF00027 Cyclic nucleotide-binding domain HCQ94_RS06015 PF00403 Heavy-metal-associated domain HCQ94_RS06020 PF09335 SNARE associated Golgi protein HCQ94_RS06035 PF03948 Ribosomal protein L9, C-terminal domain HCQ94_RS06035 PF01281 Ribosomal protein L9, N-terminal domain HCQ94_RS06040 PF01084 Ribosomal protein S18 HCQ94_RS06045 PF00436 Single-strand binding protein family HCQ94_RS06050 PF01250 Ribosomal protein S6 HCQ94_RS06055 PF00912 Transglycosylase HCQ94_RS06055 PF00905 Penicillin binding protein transpeptidase domain HCQ94_RS06060 PF13735 tRNA nucleotidyltransferase domain 2 putative HCQ94_RS06060 PF12627 Probable RNA and SrmB- binding site of polymerase A HCQ94_RS06060 PF01743 Poly A polymerase head domain HCQ94_RS06065 PF00293 NUDIX domain HCQ94_RS06075 PF03023 Lipid II flippase MurJ HCQ94_RS06080 PF07690 Major Facilitator Superfamily HCQ94_RS06090 PF00654 Voltage gated chloride channel HCQ94_RS06095 PF03796 DnaB-like helicase C terminal domain HCQ94_RS06095 PF00772 DnaB-like helicase N terminal domain HCQ94_RS06110 PF00005 ABC transporter HCQ94_RS06110 PF12848 ABC transporter HCQ94_RS06115 PF00561 alpha/beta hydrolase fold HCQ94_RS06115 PF08386 TAP-like protein HCQ94_RS06125 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HCQ94_RS06125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HCQ94_RS06125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HCQ94_RS06130 PF02233 NAD(P) transhydrogenase beta subunit HCQ94_RS06140 PF07992 Pyridine nucleotide-disulphide oxidoreductase HCQ94_RS06145 PF00085 Thioredoxin HCQ94_RS06150 PF07478 D-ala D-ala ligase C-terminus HCQ94_RS06150 PF01820 D-ala D-ala ligase N-terminus HCQ94_RS06155 PF00155 Aminotransferase class I and II HCQ94_RS06160 PF02195 ParB-like nuclease domain HCQ94_RS06160 PF17762 HTH domain found in ParB protein HCQ94_RS06165 PF13614 AAA domain HCQ94_RS06170 PF01555 DNA methylase HCQ94_RS06175 PF03960 ArsC family HCQ94_RS06185 PF02527 rRNA small subunit methyltransferase G HCQ94_RS06195 PF02096 60Kd inner membrane protein HCQ94_RS06200 PF01809 Putative membrane protein insertion efficiency factor HCQ94_RS06205 PF00825 Ribonuclease P HCQ94_RS06210 PF00468 Ribosomal protein L34