AFR_RS00005 SM00382 ATPases associated with a variety of cellular activities AFR_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AFR_RS00010 SM00480 DNA polymerase III beta subunit AFR_RS00015 SM01350 AFR_RS00015 AFR_RS00040 SM00387 Histidine kinase-like ATPases AFR_RS00040 SM00433 TopoisomeraseII AFR_RS00045 SM00434 DNA Topoisomerase IV AFR_RS00110 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS00125 SM00450 Rhodanese Homology Domain AFR_RS00140 SM00382 ATPases associated with a variety of cellular activities AFR_RS00160 SM00387 Histidine kinase-like ATPases AFR_RS00175 SM00878 Biotin carboxylase C-terminal domain AFR_RS00205 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS00210 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS00215 SM00867 YceI-like domain AFR_RS00230 SM00740 AFR_RS00230 AFR_RS00240 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS00275 SM00240 Forkhead associated domain AFR_RS00280 SM00240 Forkhead associated domain AFR_RS00285 SM00331 Sigma factor PP2C-like phosphatases AFR_RS00285 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_RS00300 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS00305 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS00305 SM00740 AFR_RS00305 AFR_RS00345 SM01091 Transporter associated domain AFR_RS00350 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS00370 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS00385 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS00435 SM00331 Sigma factor PP2C-like phosphatases AFR_RS00450 SM00855 Phosphoglycerate mutase family AFR_RS00495 SM00861 Transketolase, pyrimidine binding domain AFR_RS00540 SM00271 DnaJ molecular chaperone homology domain AFR_RS00545 SM00422 helix_turn_helix, mercury resistance AFR_RS00575 SM00382 ATPases associated with a variety of cellular activities AFR_RS00575 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_RS00600 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS00605 SM01007 Class II Aldolase and Adducin N-terminal domain AFR_RS00695 SM00788 Adenylosuccinate synthetase AFR_RS00700 SM01209 AFR_RS00700 AFR_RS00700 SM01210 AFR_RS00700 AFR_RS00710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS00720 SM00998 Adenylosuccinate lyase C-terminus AFR_RS00725 SM00020 Trypsin-like serine protease AFR_RS00735 SM01211 AFR_RS00735 AFR_RS00780 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFR_RS00905 SM00422 helix_turn_helix, mercury resistance AFR_RS01095 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS01105 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS01150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS01150 SM00387 Histidine kinase-like ATPases AFR_RS01150 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS01155 SM00448 cheY-homologous receiver domain AFR_RS01155 SM00862 Transcriptional regulatory protein, C terminal AFR_RS01170 SM00382 ATPases associated with a variety of cellular activities AFR_RS01190 SM00382 ATPases associated with a variety of cellular activities AFR_RS01195 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AFR_RS01230 SM00458 Ricin-type beta-trefoil AFR_RS01270 SM00387 Histidine kinase-like ATPases AFR_RS01275 SM00331 Sigma factor PP2C-like phosphatases AFR_RS01280 SM00387 Histidine kinase-like ATPases AFR_RS01280 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS01285 SM00331 Sigma factor PP2C-like phosphatases AFR_RS01285 SM00448 cheY-homologous receiver domain AFR_RS01295 SM00382 ATPases associated with a variety of cellular activities AFR_RS01340 SM00331 Sigma factor PP2C-like phosphatases AFR_RS01345 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS01345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS01345 SM00387 Histidine kinase-like ATPases AFR_RS01345 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS01345 SM00448 cheY-homologous receiver domain AFR_RS01350 SM00448 cheY-homologous receiver domain AFR_RS01375 SM00855 Phosphoglycerate mutase family AFR_RS01400 SM00382 ATPases associated with a variety of cellular activities AFR_RS01405 SM00382 ATPases associated with a variety of cellular activities AFR_RS01415 SM00354 helix_turn _helix lactose operon repressor AFR_RS01425 SM00710 Parallel beta-helix repeats AFR_RS01430 SM00642 Alpha-amylase domain AFR_RS01435 SM00354 helix_turn _helix lactose operon repressor AFR_RS01480 SM00344 helix_turn_helix ASNC type AFR_RS01500 SM00487 DEAD-like helicases superfamily AFR_RS01500 SM00490 helicase superfamily c-terminal domain AFR_RS01535 SM00631 AFR_RS01535 AFR_RS01575 SM00382 ATPases associated with a variety of cellular activities AFR_RS01590 SM00382 ATPases associated with a variety of cellular activities AFR_RS01615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS01655 SM00458 Ricin-type beta-trefoil AFR_RS01665 SM00487 DEAD-like helicases superfamily AFR_RS01665 SM00490 helicase superfamily c-terminal domain AFR_RS01730 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_RS01735 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFR_RS01735 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFR_RS01785 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS01925 SM00487 DEAD-like helicases superfamily AFR_RS01925 SM00490 helicase superfamily c-terminal domain AFR_RS01955 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFR_RS01955 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFR_RS01955 SM00493 AFR_RS01955 AFR_RS01980 SM00382 ATPases associated with a variety of cellular activities AFR_RS02010 SM00857 Resolvase, N terminal domain AFR_RS02035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS02035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS02050 SM01266 AFR_RS02050 AFR_RS02075 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS02110 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AFR_RS02135 SM00487 DEAD-like helicases superfamily AFR_RS02135 SM00490 helicase superfamily c-terminal domain AFR_RS02155 SM00357 Cold shock protein domain AFR_RS02190 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS02205 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS02205 SM00895 AFR_RS02205 AFR_RS02310 SM00382 ATPases associated with a variety of cellular activities AFR_RS02340 SM00382 ATPases associated with a variety of cellular activities AFR_RS02395 SM00267 diguanylate cyclase AFR_RS02440 SM00450 Rhodanese Homology Domain AFR_RS02450 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS02500 SM00382 ATPases associated with a variety of cellular activities AFR_RS02595 SM00382 ATPases associated with a variety of cellular activities AFR_RS02615 SM00382 ATPases associated with a variety of cellular activities AFR_RS02615 SM00710 Parallel beta-helix repeats AFR_RS02625 SM00862 Transcriptional regulatory protein, C terminal AFR_RS02625 SM01043 Bacterial transcriptional activator domain AFR_RS02630 SM00862 Transcriptional regulatory protein, C terminal AFR_RS02630 SM01043 Bacterial transcriptional activator domain AFR_RS02640 SM00421 helix_turn_helix, Lux Regulon AFR_RS02685 SM00448 cheY-homologous receiver domain AFR_RS02690 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS02750 SM00822 AFR_RS02750 AFR_RS02795 SM00829 Enoylreductase AFR_RS02820 SM00421 helix_turn_helix, Lux Regulon AFR_RS02820 SM00448 cheY-homologous receiver domain AFR_RS02840 SM00052 Putative diguanylate phosphodiesterase AFR_RS02840 SM00267 diguanylate cyclase AFR_RS02855 SM00858 AFR_RS02855 AFR_RS02905 SM00052 Putative diguanylate phosphodiesterase AFR_RS02905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS02905 SM00267 diguanylate cyclase AFR_RS02910 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_RS02910 SM01134 AFR_RS02910 AFR_RS02930 SM00829 Enoylreductase AFR_RS02945 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS02985 SM00028 Tetratricopeptide repeats AFR_RS02990 SM00028 Tetratricopeptide repeats AFR_RS03065 SM00636 AFR_RS03065 AFR_RS03090 SM00862 Transcriptional regulatory protein, C terminal AFR_RS03090 SM01043 Bacterial transcriptional activator domain AFR_RS03100 SM00382 ATPases associated with a variety of cellular activities AFR_RS03105 SM00822 AFR_RS03105 AFR_RS03145 SM00642 Alpha-amylase domain AFR_RS03170 SM00822 AFR_RS03170 AFR_RS03175 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS03190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS03190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS03195 SM00650 Ribosomal RNA adenine dimethylases AFR_RS03210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS03255 SM00354 helix_turn _helix lactose operon repressor AFR_RS03270 SM00382 ATPases associated with a variety of cellular activities AFR_RS03275 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS03310 SM00382 ATPases associated with a variety of cellular activities AFR_RS03315 SM00354 helix_turn _helix lactose operon repressor AFR_RS03320 SM01007 Class II Aldolase and Adducin N-terminal domain AFR_RS03355 SM00387 Histidine kinase-like ATPases AFR_RS03355 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS03365 SM00382 ATPases associated with a variety of cellular activities AFR_RS03380 SM00996 S-adenosyl-L-homocysteine hydrolase AFR_RS03380 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFR_RS03390 SM00354 helix_turn _helix lactose operon repressor AFR_RS03420 SM00822 AFR_RS03420 AFR_RS03470 SM00382 ATPases associated with a variety of cellular activities AFR_RS03480 SM00421 helix_turn_helix, Lux Regulon AFR_RS03480 SM00448 cheY-homologous receiver domain AFR_RS03495 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS03500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS03500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS03525 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS03535 SM00267 diguanylate cyclase AFR_RS03545 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS03565 SM00421 helix_turn_helix, Lux Regulon AFR_RS03570 SM00829 Enoylreductase AFR_RS03575 SM00710 Parallel beta-helix repeats AFR_RS03585 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS03615 SM00822 AFR_RS03615 AFR_RS03645 SM00257 Lysin motif AFR_RS03680 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS03720 SM00631 AFR_RS03720 AFR_RS03735 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_RS03735 SM00458 Ricin-type beta-trefoil AFR_RS03750 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_RS03750 SM00458 Ricin-type beta-trefoil AFR_RS03790 SM00382 ATPases associated with a variety of cellular activities AFR_RS03820 SM00421 helix_turn_helix, Lux Regulon AFR_RS03835 SM00633 Glycosyl hydrolase family 10 AFR_RS03875 SM00421 helix_turn_helix, Lux Regulon AFR_RS03895 SM00829 Enoylreductase AFR_RS03925 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS03980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS03980 SM00387 Histidine kinase-like ATPases AFR_RS03980 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS03985 SM00448 cheY-homologous receiver domain AFR_RS03985 SM00862 Transcriptional regulatory protein, C terminal AFR_RS03995 SM00060 Fibronectin type 3 domain AFR_RS04025 SM00331 Sigma factor PP2C-like phosphatases AFR_RS04025 SM00448 cheY-homologous receiver domain AFR_RS04030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS04030 SM00387 Histidine kinase-like ATPases AFR_RS04030 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS04035 SM00448 cheY-homologous receiver domain AFR_RS04050 SM00822 AFR_RS04050 AFR_RS04065 SM00637 AFR_RS04065 AFR_RS04090 SM00822 AFR_RS04090 AFR_RS04105 SM00487 DEAD-like helicases superfamily AFR_RS04105 SM00490 helicase superfamily c-terminal domain AFR_RS04145 SM00487 DEAD-like helicases superfamily AFR_RS04145 SM00490 helicase superfamily c-terminal domain AFR_RS04185 SM00450 Rhodanese Homology Domain AFR_RS04200 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFR_RS04405 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS04435 SM00450 Rhodanese Homology Domain AFR_RS04445 SM00052 Putative diguanylate phosphodiesterase AFR_RS04445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS04445 SM00267 diguanylate cyclase AFR_RS04485 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFR_RS04495 SM00382 ATPases associated with a variety of cellular activities AFR_RS04520 SM00663 RNA polymerase I subunit A N-terminus AFR_RS04545 SM00838 Elongation factor G C-terminus AFR_RS04545 SM00889 Elongation factor G, domain IV AFR_RS04555 SM01403 AFR_RS04555 AFR_RS04575 SM01382 AFR_RS04575 AFR_RS04575 SM01383 AFR_RS04575 AFR_RS04590 SM00322 K homology RNA-binding domain AFR_RS04610 SM01374 AFR_RS04610 AFR_RS04615 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFR_RS04705 SM00363 S4 RNA-binding domain AFR_RS04705 SM01390 AFR_RS04705 AFR_RS04710 SM00662 RNA polymerases D AFR_RS04735 SM00382 ATPases associated with a variety of cellular activities AFR_RS04795 SM00382 ATPases associated with a variety of cellular activities AFR_RS04815 SM00387 Histidine kinase-like ATPases AFR_RS04820 SM00960 Roadblock/LC7 domain AFR_RS04835 SM00862 Transcriptional regulatory protein, C terminal AFR_RS04890 SM01005 Alanine racemase, C-terminal domain AFR_RS04905 SM00986 Uracil DNA glycosylase superfamily AFR_RS04905 SM00987 UreE urease accessory protein, C-terminal domain AFR_RS04935 SM00382 ATPases associated with a variety of cellular activities AFR_RS04950 SM00382 ATPases associated with a variety of cellular activities AFR_RS04970 SM00883 Chaperonin 10 Kd subunit AFR_RS04995 SM00421 helix_turn_helix, Lux Regulon AFR_RS05005 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS05005 SM01240 AFR_RS05005 AFR_RS05010 SM01240 AFR_RS05010 AFR_RS05080 SM00421 helix_turn_helix, Lux Regulon AFR_RS05080 SM00448 cheY-homologous receiver domain AFR_RS05100 SM00382 ATPases associated with a variety of cellular activities AFR_RS05105 SM00382 ATPases associated with a variety of cellular activities AFR_RS05115 SM00830 Chorismate mutase type II AFR_RS05150 SM00881 CoA binding domain AFR_RS05170 SM00798 AICARFT/IMPCHase bienzyme AFR_RS05170 SM00851 MGS-like domain AFR_RS05185 SM00849 Metallo-beta-lactamase superfamily AFR_RS05195 SM01329 AFR_RS05195 AFR_RS05205 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_RS05205 SM01134 AFR_RS05205 AFR_RS05275 SM00382 ATPases associated with a variety of cellular activities AFR_RS05285 SM00382 ATPases associated with a variety of cellular activities AFR_RS05300 SM00422 helix_turn_helix, mercury resistance AFR_RS05320 SM00108 Bulb-type mannose-specific lectin AFR_RS05345 SM00487 DEAD-like helicases superfamily AFR_RS05345 SM00490 helicase superfamily c-terminal domain AFR_RS05345 SM00982 AFR_RS05345 AFR_RS05345 SM01058 CarD-like/TRCF domain AFR_RS05380 SM01192 AFR_RS05380 AFR_RS05380 SM01193 AFR_RS05380 AFR_RS05420 SM00986 Uracil DNA glycosylase superfamily AFR_RS05420 SM00987 UreE urease accessory protein, C-terminal domain AFR_RS05495 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS05510 SM00267 diguanylate cyclase AFR_RS05515 SM00880 AFR_RS05515 AFR_RS05515 SM01118 AFR_RS05515 AFR_RS05540 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFR_RS05605 SM00052 Putative diguanylate phosphodiesterase AFR_RS05605 SM00267 diguanylate cyclase AFR_RS05620 SM01001 AIR carboxylase AFR_RS05630 SM00984 UDP binding domain AFR_RS05645 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS05655 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS05660 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS05665 SM00849 Metallo-beta-lactamase superfamily AFR_RS05725 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS05805 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS05830 SM00448 cheY-homologous receiver domain AFR_RS05830 SM00862 Transcriptional regulatory protein, C terminal AFR_RS05835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS05835 SM00387 Histidine kinase-like ATPases AFR_RS05835 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS05865 SM00957 SecA DEAD-like domain AFR_RS05865 SM00958 SecA preprotein cross-linking domain AFR_RS05880 SM00344 helix_turn_helix ASNC type AFR_RS05885 SM00450 Rhodanese Homology Domain AFR_RS05910 SM00937 AFR_RS05910 AFR_RS05915 SM00382 ATPases associated with a variety of cellular activities AFR_RS05935 SM00637 AFR_RS05935 AFR_RS05985 SM00862 Transcriptional regulatory protein, C terminal AFR_RS05985 SM01043 Bacterial transcriptional activator domain AFR_RS06005 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS06015 SM00422 helix_turn_helix, mercury resistance AFR_RS06045 SM00842 Cell division protein FtsA AFR_RS06065 SM00382 ATPases associated with a variety of cellular activities AFR_RS06070 SM00382 ATPases associated with a variety of cellular activities AFR_RS06075 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS06105 SM00448 cheY-homologous receiver domain AFR_RS06110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS06110 SM00387 Histidine kinase-like ATPases AFR_RS06110 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS06115 SM00448 cheY-homologous receiver domain AFR_RS06120 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS06130 SM00052 Putative diguanylate phosphodiesterase AFR_RS06130 SM00267 diguanylate cyclase AFR_RS06175 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS06175 SM00331 Sigma factor PP2C-like phosphatases AFR_RS06185 SM00943 Bifunctional DNA primase/polymerase, N-terminal AFR_RS06240 SM00382 ATPases associated with a variety of cellular activities AFR_RS06250 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS06250 SM00895 AFR_RS06250 AFR_RS06280 SM00382 ATPases associated with a variety of cellular activities AFR_RS06285 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS06300 SM00052 Putative diguanylate phosphodiesterase AFR_RS06300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_RS06300 SM00267 diguanylate cyclase AFR_RS06310 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS06325 SM00829 Enoylreductase AFR_RS06330 SM00849 Metallo-beta-lactamase superfamily AFR_RS06350 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS06395 SM00421 helix_turn_helix, Lux Regulon AFR_RS06415 SM00232 JAB/MPN domain AFR_RS06435 SM00849 Metallo-beta-lactamase superfamily AFR_RS06460 SM00382 ATPases associated with a variety of cellular activities AFR_RS06465 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS06530 SM00507 HNH nucleases AFR_RS06550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS06550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS06590 SM00479 AFR_RS06590 AFR_RS06610 SM00943 Bifunctional DNA primase/polymerase, N-terminal AFR_RS06710 SM00862 Transcriptional regulatory protein, C terminal AFR_RS06710 SM01043 Bacterial transcriptional activator domain AFR_RS06745 SM00382 ATPases associated with a variety of cellular activities AFR_RS06760 SM00382 ATPases associated with a variety of cellular activities AFR_RS06800 SM00421 helix_turn_helix, Lux Regulon AFR_RS06800 SM00448 cheY-homologous receiver domain AFR_RS06805 SM00387 Histidine kinase-like ATPases AFR_RS06815 SM00382 ATPases associated with a variety of cellular activities AFR_RS06820 SM00382 ATPases associated with a variety of cellular activities AFR_RS06830 SM00422 helix_turn_helix, mercury resistance AFR_RS06865 SM00028 Tetratricopeptide repeats AFR_RS06865 SM00862 Transcriptional regulatory protein, C terminal AFR_RS06865 SM01043 Bacterial transcriptional activator domain AFR_RS06875 SM00448 cheY-homologous receiver domain AFR_RS06925 SM00344 helix_turn_helix ASNC type AFR_RS06970 SM00382 ATPases associated with a variety of cellular activities AFR_RS06995 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS07060 SM00960 Roadblock/LC7 domain AFR_RS07075 SM00862 Transcriptional regulatory protein, C terminal AFR_RS07075 SM01043 Bacterial transcriptional activator domain AFR_RS07090 SM00327 von Willebrand factor (vWF) type A domain AFR_RS07095 SM00331 Sigma factor PP2C-like phosphatases AFR_RS07100 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS07125 SM00642 Alpha-amylase domain AFR_RS07160 SM00822 AFR_RS07160 AFR_RS07210 SM01012 AFR_RS07210 AFR_RS07225 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS07235 SM00862 Transcriptional regulatory protein, C terminal AFR_RS07240 SM00421 helix_turn_helix, Lux Regulon AFR_RS07240 SM00448 cheY-homologous receiver domain AFR_RS07260 SM00382 ATPases associated with a variety of cellular activities AFR_RS07275 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS07295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS07295 SM00387 Histidine kinase-like ATPases AFR_RS07295 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS07300 SM00448 cheY-homologous receiver domain AFR_RS07300 SM00862 Transcriptional regulatory protein, C terminal AFR_RS07315 SM00382 ATPases associated with a variety of cellular activities AFR_RS07475 SM00382 ATPases associated with a variety of cellular activities AFR_RS07610 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS07640 SM00382 ATPases associated with a variety of cellular activities AFR_RS07640 SM00994 ClpX C4-type zinc finger AFR_RS07640 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_RS07715 SM00562 AFR_RS07715 AFR_RS07735 SM00563 Phosphate acyltransferases AFR_RS07755 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS07755 SM00091 PAS domain AFR_RS07755 SM00331 Sigma factor PP2C-like phosphatases AFR_RS07765 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS07775 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_RS07820 SM00091 PAS domain AFR_RS07820 SM00387 Histidine kinase-like ATPases AFR_RS07820 SM00448 cheY-homologous receiver domain AFR_RS07835 SM00855 Phosphoglycerate mutase family AFR_RS07860 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_RS07865 SM00849 Metallo-beta-lactamase superfamily AFR_RS07910 SM00838 Elongation factor G C-terminus AFR_RS07920 SM00091 PAS domain AFR_RS07935 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS07950 SM00271 DnaJ molecular chaperone homology domain AFR_RS07970 SM00382 ATPases associated with a variety of cellular activities AFR_RS07975 SM00923 MbtH-like protein AFR_RS07985 SM00382 ATPases associated with a variety of cellular activities AFR_RS08010 SM00822 AFR_RS08010 AFR_RS08040 SM01217 AFR_RS08040 AFR_RS08070 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS08070 SM01091 Transporter associated domain AFR_RS08130 SM00481 DNA polymerase alpha chain like domain AFR_RS08145 SM00382 ATPases associated with a variety of cellular activities AFR_RS08175 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS08185 SM00382 ATPases associated with a variety of cellular activities AFR_RS08235 SM00960 Roadblock/LC7 domain AFR_RS08260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS08260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS08265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_RS08270 SM00400 zinc finger AFR_RS08270 SM00493 AFR_RS08270 AFR_RS08270 SM00766 DNA primase DnaG DnaB-binding AFR_RS08280 SM00382 ATPases associated with a variety of cellular activities AFR_RS08305 SM00382 ATPases associated with a variety of cellular activities AFR_RS08415 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS08425 SM00226 Low molecular weight phosphatase family AFR_RS08435 SM00028 Tetratricopeptide repeats AFR_RS08480 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS08485 SM00382 ATPases associated with a variety of cellular activities AFR_RS08525 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS08565 SM00421 helix_turn_helix, Lux Regulon AFR_RS08595 SM01120 AFR_RS08595 AFR_RS08600 SM00836 DALR anticodon binding domain AFR_RS08600 SM01016 Arginyl tRNA synthetase N terminal dom AFR_RS08625 SM00382 ATPases associated with a variety of cellular activities AFR_RS08655 SM00560 LamG-like jellyroll fold domain AFR_RS08660 SM00422 helix_turn_helix, mercury resistance AFR_RS08660 SM00871 Bacterial transcription activator, effector binding domain AFR_RS08665 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS08705 SM00829 Enoylreductase AFR_RS08745 SM00947 Carbonic anhydrase AFR_RS08765 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS08770 SM00829 Enoylreductase AFR_RS08775 SM00825 Beta-ketoacyl synthase AFR_RS08790 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFR_RS08830 SM00458 Ricin-type beta-trefoil AFR_RS08830 SM00636 AFR_RS08830 AFR_RS08850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS08850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS08870 SM00382 ATPases associated with a variety of cellular activities AFR_RS08880 SM00861 Transketolase, pyrimidine binding domain AFR_RS08955 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS08970 SM00943 Bifunctional DNA primase/polymerase, N-terminal AFR_RS08975 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS08995 SM00855 Phosphoglycerate mutase family AFR_RS09000 SM00636 AFR_RS09000 AFR_RS09015 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS09050 SM00448 cheY-homologous receiver domain AFR_RS09055 SM00387 Histidine kinase-like ATPases AFR_RS09055 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS09060 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_RS09105 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_RS09130 SM00955 AFR_RS09130 AFR_RS09150 SM01230 AFR_RS09150 AFR_RS09215 SM00862 Transcriptional regulatory protein, C terminal AFR_RS09215 SM01043 Bacterial transcriptional activator domain AFR_RS09230 SM01230 AFR_RS09230 AFR_RS09275 SM00255 Toll - interleukin 1 - resistance AFR_RS09340 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS09420 SM00028 Tetratricopeptide repeats AFR_RS09435 SM00382 ATPases associated with a variety of cellular activities AFR_RS09440 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS09580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_RS09580 SM00954 Region found in RelA / SpoT proteins AFR_RS09585 SM00465 GIY-YIG type nucleases (URI domain) AFR_RS09585 SM00479 AFR_RS09585 AFR_RS09610 SM00382 ATPases associated with a variety of cellular activities AFR_RS09630 SM00382 ATPases associated with a variety of cellular activities AFR_RS09650 SM00421 helix_turn_helix, Lux Regulon AFR_RS09650 SM00448 cheY-homologous receiver domain AFR_RS09655 SM00387 Histidine kinase-like ATPases AFR_RS09695 SM00563 Phosphate acyltransferases AFR_RS09700 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_RS09700 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_RS09755 SM00495 Chitin-binding domain type 3 AFR_RS09755 SM00636 AFR_RS09755 AFR_RS09775 SM00829 Enoylreductase AFR_RS09785 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS09795 SM00518 AP endonuclease family 2 AFR_RS09800 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS09800 SM00740 AFR_RS09800 AFR_RS09845 SM00507 HNH nucleases AFR_RS09850 SM00479 AFR_RS09850 AFR_RS09855 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS09930 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS09995 SM00481 DNA polymerase alpha chain like domain AFR_RS10030 SM00460 Transglutaminase/protease-like homologues AFR_RS10130 SM00864 Tubulin/FtsZ family, GTPase domain AFR_RS10130 SM00865 Tubulin/FtsZ family, C-terminal domain AFR_RS10165 SM01152 AFR_RS10165 AFR_RS10200 SM00481 DNA polymerase alpha chain like domain AFR_RS10210 SM00464 Found in ATP-dependent protease La (LON) AFR_RS10230 SM01211 AFR_RS10230 AFR_RS10275 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS10320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS10320 SM00387 Histidine kinase-like ATPases AFR_RS10320 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS10325 SM00448 cheY-homologous receiver domain AFR_RS10325 SM00862 Transcriptional regulatory protein, C terminal AFR_RS10335 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS10350 SM00382 ATPases associated with a variety of cellular activities AFR_RS10355 SM00382 ATPases associated with a variety of cellular activities AFR_RS10360 SM00363 S4 RNA-binding domain AFR_RS10360 SM01390 AFR_RS10360 AFR_RS10380 SM00382 ATPases associated with a variety of cellular activities AFR_RS10455 SM00327 von Willebrand factor (vWF) type A domain AFR_RS10485 SM00448 cheY-homologous receiver domain AFR_RS10485 SM01012 AFR_RS10485 AFR_RS10505 SM00382 ATPases associated with a variety of cellular activities AFR_RS10510 SM00382 ATPases associated with a variety of cellular activities AFR_RS10515 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS10525 SM00382 ATPases associated with a variety of cellular activities AFR_RS10530 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFR_RS10530 SM00474 3'-5' exonuclease AFR_RS10530 SM00475 5'-3' exonuclease AFR_RS10530 SM00482 DNA polymerase A domain AFR_RS10535 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS10555 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_RS10565 SM00487 DEAD-like helicases superfamily AFR_RS10565 SM00490 helicase superfamily c-terminal domain AFR_RS10590 SM00838 Elongation factor G C-terminus AFR_RS10600 SM00649 Ribosomal protein L11/L12 AFR_RS10615 SM00849 Metallo-beta-lactamase superfamily AFR_RS10635 SM00382 ATPases associated with a variety of cellular activities AFR_RS10645 SM00465 GIY-YIG type nucleases (URI domain) AFR_RS10665 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_RS10740 SM00861 Transketolase, pyrimidine binding domain AFR_RS10780 SM00382 ATPases associated with a variety of cellular activities AFR_RS10820 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS10835 SM00855 Phosphoglycerate mutase family AFR_RS10855 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS10880 SM00382 ATPases associated with a variety of cellular activities AFR_RS10895 SM00382 ATPases associated with a variety of cellular activities AFR_RS10930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS10935 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AFR_RS10940 SM00986 Uracil DNA glycosylase superfamily AFR_RS10940 SM00987 UreE urease accessory protein, C-terminal domain AFR_RS10950 SM00822 AFR_RS10950 AFR_RS10955 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS11005 SM00090 RIO-like kinase AFR_RS11015 SM01230 AFR_RS11015 AFR_RS11025 SM00862 Transcriptional regulatory protein, C terminal AFR_RS11070 SM01011 Aminopeptidase P, N-terminal domain AFR_RS11115 SM00327 von Willebrand factor (vWF) type A domain AFR_RS11130 SM00421 helix_turn_helix, Lux Regulon AFR_RS11130 SM00448 cheY-homologous receiver domain AFR_RS11140 SM00822 AFR_RS11140 AFR_RS11180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS11180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS11185 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS11210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS11230 SM00244 prohibitin homologues AFR_RS11325 SM01217 AFR_RS11325 AFR_RS11335 SM00482 DNA polymerase A domain AFR_RS11340 SM00382 ATPases associated with a variety of cellular activities AFR_RS11350 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS11365 SM00960 Roadblock/LC7 domain AFR_RS11370 SM00387 Histidine kinase-like ATPases AFR_RS11405 SM00421 helix_turn_helix, Lux Regulon AFR_RS11405 SM00448 cheY-homologous receiver domain AFR_RS11435 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS11450 SM00422 helix_turn_helix, mercury resistance AFR_RS11450 SM00871 Bacterial transcription activator, effector binding domain AFR_RS11510 SM00382 ATPases associated with a variety of cellular activities AFR_RS11545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS11545 SM00387 Histidine kinase-like ATPases AFR_RS11545 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS11550 SM00448 cheY-homologous receiver domain AFR_RS11550 SM00862 Transcriptional regulatory protein, C terminal AFR_RS11575 SM00448 cheY-homologous receiver domain AFR_RS11590 SM00354 helix_turn _helix lactose operon repressor AFR_RS11595 SM00642 Alpha-amylase domain AFR_RS11630 SM00867 YceI-like domain AFR_RS11640 SM00382 ATPases associated with a variety of cellular activities AFR_RS11660 SM00458 Ricin-type beta-trefoil AFR_RS11670 SM00448 cheY-homologous receiver domain AFR_RS11675 SM00567 E-Z type HEAT repeats AFR_RS11690 SM00028 Tetratricopeptide repeats AFR_RS11690 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS11695 SM00331 Sigma factor PP2C-like phosphatases AFR_RS11700 SM00014 Acid phosphatase homologues AFR_RS11705 SM00421 helix_turn_helix, Lux Regulon AFR_RS11725 SM00984 UDP binding domain AFR_RS11875 SM00014 Acid phosphatase homologues AFR_RS11905 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS11910 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS11915 SM00829 Enoylreductase AFR_RS11945 SM00487 DEAD-like helicases superfamily AFR_RS11945 SM00490 helicase superfamily c-terminal domain AFR_RS11955 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS11960 SM00421 helix_turn_helix, Lux Regulon AFR_RS11970 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS11985 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS12015 SM00052 Putative diguanylate phosphodiesterase AFR_RS12015 SM00267 diguanylate cyclase AFR_RS12020 SM00822 AFR_RS12020 AFR_RS12030 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS12040 SM00421 helix_turn_helix, Lux Regulon AFR_RS12060 SM00862 Transcriptional regulatory protein, C terminal AFR_RS12060 SM01043 Bacterial transcriptional activator domain AFR_RS12115 SM00331 Sigma factor PP2C-like phosphatases AFR_RS12120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS12135 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS12140 SM00460 Transglutaminase/protease-like homologues AFR_RS12155 SM00060 Fibronectin type 3 domain AFR_RS12180 SM00382 ATPases associated with a variety of cellular activities AFR_RS12215 SM00567 E-Z type HEAT repeats AFR_RS12225 SM00357 Cold shock protein domain AFR_RS12280 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS12370 SM00422 helix_turn_helix, mercury resistance AFR_RS12375 SM00421 helix_turn_helix, Lux Regulon AFR_RS12420 SM00382 ATPases associated with a variety of cellular activities AFR_RS12420 SM00421 helix_turn_helix, Lux Regulon AFR_RS12435 SM00422 helix_turn_helix, mercury resistance AFR_RS12445 SM00248 ankyrin repeats AFR_RS12455 SM00421 helix_turn_helix, Lux Regulon AFR_RS12455 SM00448 cheY-homologous receiver domain AFR_RS12460 SM00331 Sigma factor PP2C-like phosphatases AFR_RS12495 SM00637 AFR_RS12495 AFR_RS12505 SM00823 Phosphopantetheine attachment site AFR_RS12510 SM00823 Phosphopantetheine attachment site AFR_RS12520 SM00923 MbtH-like protein AFR_RS12535 SM00421 helix_turn_helix, Lux Regulon AFR_RS12535 SM00448 cheY-homologous receiver domain AFR_RS12575 SM00421 helix_turn_helix, Lux Regulon AFR_RS12580 SM00387 Histidine kinase-like ATPases AFR_RS12610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS12610 SM00091 PAS domain AFR_RS12610 SM00387 Histidine kinase-like ATPases AFR_RS12610 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS12635 SM00421 helix_turn_helix, Lux Regulon AFR_RS12635 SM00448 cheY-homologous receiver domain AFR_RS12650 SM00458 Ricin-type beta-trefoil AFR_RS12660 SM00382 ATPases associated with a variety of cellular activities AFR_RS12680 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS12705 SM00829 Enoylreductase AFR_RS12710 SM00829 Enoylreductase AFR_RS12715 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS12800 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS12800 SM00895 AFR_RS12800 AFR_RS12805 SM01329 AFR_RS12805 AFR_RS12810 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS12815 SM00829 Enoylreductase AFR_RS12865 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS12885 SM00382 ATPases associated with a variety of cellular activities AFR_RS12930 SM00458 Ricin-type beta-trefoil AFR_RS12935 SM00458 Ricin-type beta-trefoil AFR_RS12945 SM00382 ATPases associated with a variety of cellular activities AFR_RS12995 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13015 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS13025 SM00830 Chorismate mutase type II AFR_RS13035 SM00421 helix_turn_helix, Lux Regulon AFR_RS13035 SM00448 cheY-homologous receiver domain AFR_RS13050 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS13055 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13110 SM00829 Enoylreductase AFR_RS13120 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS13125 SM00822 AFR_RS13125 AFR_RS13170 SM00382 ATPases associated with a variety of cellular activities AFR_RS13215 SM00872 Alpha mannosidase, middle domain AFR_RS13230 SM00422 helix_turn_helix, mercury resistance AFR_RS13235 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS13245 SM00448 cheY-homologous receiver domain AFR_RS13245 SM00862 Transcriptional regulatory protein, C terminal AFR_RS13250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS13250 SM00387 Histidine kinase-like ATPases AFR_RS13250 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS13260 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13275 SM00354 helix_turn _helix lactose operon repressor AFR_RS13305 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS13310 SM00829 Enoylreductase AFR_RS13330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS13375 SM00020 Trypsin-like serine protease AFR_RS13415 SM00448 cheY-homologous receiver domain AFR_RS13415 SM00862 Transcriptional regulatory protein, C terminal AFR_RS13420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS13420 SM00387 Histidine kinase-like ATPases AFR_RS13420 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS13440 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13450 SM00642 Alpha-amylase domain AFR_RS13485 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS13505 SM00860 SMI1 / KNR4 family AFR_RS13520 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS13535 SM00960 Roadblock/LC7 domain AFR_RS13540 SM00387 Histidine kinase-like ATPases AFR_RS13545 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS13545 SM00895 AFR_RS13545 AFR_RS13555 SM00382 ATPases associated with a variety of cellular activities AFR_RS13555 SM00464 Found in ATP-dependent protease La (LON) AFR_RS13575 SM00822 AFR_RS13575 AFR_RS13605 SM00822 AFR_RS13605 AFR_RS13610 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13625 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13630 SM00822 AFR_RS13630 AFR_RS13645 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS13660 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS13715 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13725 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS13775 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS13810 SM00020 Trypsin-like serine protease AFR_RS13825 SM00421 helix_turn_helix, Lux Regulon AFR_RS13825 SM00448 cheY-homologous receiver domain AFR_RS13845 SM00829 Enoylreductase AFR_RS13850 SM00422 helix_turn_helix, mercury resistance AFR_RS13875 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_RS13875 SM01232 AFR_RS13875 AFR_RS13885 SM01043 Bacterial transcriptional activator domain AFR_RS13920 SM00387 Histidine kinase-like ATPases AFR_RS13920 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS13950 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS14020 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS14035 SM00028 Tetratricopeptide repeats AFR_RS14035 SM00267 diguanylate cyclase AFR_RS14060 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS14065 SM00822 AFR_RS14065 AFR_RS14090 SM00382 ATPases associated with a variety of cellular activities AFR_RS14095 SM00382 ATPases associated with a variety of cellular activities AFR_RS14155 SM00387 Histidine kinase-like ATPases AFR_RS14160 SM00421 helix_turn_helix, Lux Regulon AFR_RS14160 SM00448 cheY-homologous receiver domain AFR_RS14195 SM00728 Clostridial hydrophobic, with a conserved W residue, domain. AFR_RS14205 SM00998 Adenylosuccinate lyase C-terminus AFR_RS14220 SM00331 Sigma factor PP2C-like phosphatases AFR_RS14235 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS14235 SM00895 AFR_RS14235 AFR_RS14255 SM00422 helix_turn_helix, mercury resistance AFR_RS14255 SM00871 Bacterial transcription activator, effector binding domain AFR_RS14300 SM00564 beta-propeller repeat AFR_RS14305 SM00829 Enoylreductase AFR_RS14390 SM00382 ATPases associated with a variety of cellular activities AFR_RS14420 SM00458 Ricin-type beta-trefoil AFR_RS14425 SM00861 Transketolase, pyrimidine binding domain AFR_RS14490 SM00822 AFR_RS14490 AFR_RS14515 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_RS14580 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS14580 SM01012 AFR_RS14580 AFR_RS14585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS14585 SM01012 AFR_RS14585 AFR_RS14595 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS14600 SM00829 Enoylreductase AFR_RS14625 SM00357 Cold shock protein domain AFR_RS14635 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS14640 SM00421 helix_turn_helix, Lux Regulon AFR_RS14665 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS14670 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS14680 SM00382 ATPases associated with a variety of cellular activities AFR_RS14685 SM00382 ATPases associated with a variety of cellular activities AFR_RS14745 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS14745 SM01012 AFR_RS14745 AFR_RS14790 SM00421 helix_turn_helix, Lux Regulon AFR_RS14805 SM00829 Enoylreductase AFR_RS14850 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS14855 SM00637 AFR_RS14855 AFR_RS14860 SM00458 Ricin-type beta-trefoil AFR_RS14900 SM00421 helix_turn_helix, Lux Regulon AFR_RS14900 SM00448 cheY-homologous receiver domain AFR_RS14905 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS14925 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS14930 SM00829 Enoylreductase AFR_RS14935 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS14950 SM00862 Transcriptional regulatory protein, C terminal AFR_RS14950 SM01043 Bacterial transcriptional activator domain AFR_RS14960 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS14975 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS14980 SM00637 AFR_RS14980 AFR_RS14985 SM00637 AFR_RS14985 AFR_RS14990 SM00637 AFR_RS14990 AFR_RS14995 SM00633 Glycosyl hydrolase family 10 AFR_RS14995 SM00637 AFR_RS14995 AFR_RS15020 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS15065 SM00458 Ricin-type beta-trefoil AFR_RS15065 SM00758 AFR_RS15065 AFR_RS15090 SM00849 Metallo-beta-lactamase superfamily AFR_RS15100 SM00612 AFR_RS15100 AFR_RS15105 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS15130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS15130 SM00387 Histidine kinase-like ATPases AFR_RS15130 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS15135 SM00448 cheY-homologous receiver domain AFR_RS15135 SM00862 Transcriptional regulatory protein, C terminal AFR_RS15140 SM00382 ATPases associated with a variety of cellular activities AFR_RS15195 SM00829 Enoylreductase AFR_RS15215 SM00382 ATPases associated with a variety of cellular activities AFR_RS15225 SM00560 LamG-like jellyroll fold domain AFR_RS15225 SM00758 AFR_RS15225 AFR_RS15245 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFR_RS15265 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS15265 SM00895 AFR_RS15265 AFR_RS15330 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS15425 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS15430 SM00829 Enoylreductase AFR_RS15445 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS15460 SM00382 ATPases associated with a variety of cellular activities AFR_RS15475 SM00267 diguanylate cyclase AFR_RS15510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS15510 SM00387 Histidine kinase-like ATPases AFR_RS15510 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS15515 SM00448 cheY-homologous receiver domain AFR_RS15515 SM00862 Transcriptional regulatory protein, C terminal AFR_RS15540 SM00822 AFR_RS15540 AFR_RS15550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS15550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS15565 SM00458 Ricin-type beta-trefoil AFR_RS15610 SM00823 Phosphopantetheine attachment site AFR_RS15620 SM00758 AFR_RS15620 AFR_RS15630 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS15685 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS15685 SM00871 Bacterial transcription activator, effector binding domain AFR_RS15705 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS15755 SM00849 Metallo-beta-lactamase superfamily AFR_RS15765 SM00382 ATPases associated with a variety of cellular activities AFR_RS15780 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS15800 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS15800 SM00895 AFR_RS15800 AFR_RS15820 SM00849 Metallo-beta-lactamase superfamily AFR_RS15835 SM00822 AFR_RS15835 AFR_RS15880 SM00656 AFR_RS15880 AFR_RS15905 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_RS15905 SM00458 Ricin-type beta-trefoil AFR_RS15915 SM00860 SMI1 / KNR4 family AFR_RS15960 SM00091 PAS domain AFR_RS15960 SM00387 Histidine kinase-like ATPases AFR_RS15965 SM00448 cheY-homologous receiver domain AFR_RS15970 SM00028 Tetratricopeptide repeats AFR_RS16100 SM00984 UDP binding domain AFR_RS16130 SM00829 Enoylreductase AFR_RS16205 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFR_RS16210 SM00344 helix_turn_helix ASNC type AFR_RS16235 SM00421 helix_turn_helix, Lux Regulon AFR_RS16235 SM00448 cheY-homologous receiver domain AFR_RS16240 SM00387 Histidine kinase-like ATPases AFR_RS16270 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS16310 SM00382 ATPases associated with a variety of cellular activities AFR_RS16345 SM00421 helix_turn_helix, Lux Regulon AFR_RS16345 SM00448 cheY-homologous receiver domain AFR_RS16435 SM00849 Metallo-beta-lactamase superfamily AFR_RS16445 SM00822 AFR_RS16445 AFR_RS16450 SM00637 AFR_RS16450 AFR_RS16465 SM01120 AFR_RS16465 AFR_RS16495 SM00060 Fibronectin type 3 domain AFR_RS16530 SM00458 Ricin-type beta-trefoil AFR_RS16590 SM00984 UDP binding domain AFR_RS16645 SM01012 AFR_RS16645 AFR_RS16700 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS16700 SM01012 AFR_RS16700 AFR_RS16705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS16705 SM01012 AFR_RS16705 AFR_RS16720 SM00382 ATPases associated with a variety of cellular activities AFR_RS16820 SM00020 Trypsin-like serine protease AFR_RS16845 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS16865 SM00382 ATPases associated with a variety of cellular activities AFR_RS16905 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS16920 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS16920 SM00387 Histidine kinase-like ATPases AFR_RS16925 SM00421 helix_turn_helix, Lux Regulon AFR_RS16925 SM00448 cheY-homologous receiver domain AFR_RS16930 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS16950 SM00354 helix_turn _helix lactose operon repressor AFR_RS17050 SM00344 helix_turn_helix ASNC type AFR_RS17060 SM00861 Transketolase, pyrimidine binding domain AFR_RS17080 SM00354 helix_turn _helix lactose operon repressor AFR_RS17095 SM00862 Transcriptional regulatory protein, C terminal AFR_RS17100 SM00612 AFR_RS17100 AFR_RS17105 SM00862 Transcriptional regulatory protein, C terminal AFR_RS17130 SM00052 Putative diguanylate phosphodiesterase AFR_RS17130 SM00267 diguanylate cyclase AFR_RS17195 SM00458 Ricin-type beta-trefoil AFR_RS17205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS17220 SM00052 Putative diguanylate phosphodiesterase AFR_RS17220 SM00091 PAS domain AFR_RS17220 SM00267 diguanylate cyclase AFR_RS17240 SM00458 Ricin-type beta-trefoil AFR_RS17260 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS17295 SM00382 ATPases associated with a variety of cellular activities AFR_RS17305 SM00822 AFR_RS17305 AFR_RS17320 SM00052 Putative diguanylate phosphodiesterase AFR_RS17320 SM00267 diguanylate cyclase AFR_RS17345 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS17360 SM00448 cheY-homologous receiver domain AFR_RS17365 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS17365 SM00331 Sigma factor PP2C-like phosphatases AFR_RS17430 SM00862 Transcriptional regulatory protein, C terminal AFR_RS17430 SM01043 Bacterial transcriptional activator domain AFR_RS17445 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS17455 SM00382 ATPases associated with a variety of cellular activities AFR_RS17470 SM00448 cheY-homologous receiver domain AFR_RS17470 SM00862 Transcriptional regulatory protein, C terminal AFR_RS17475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS17475 SM00387 Histidine kinase-like ATPases AFR_RS17475 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS17480 SM00052 Putative diguanylate phosphodiesterase AFR_RS17480 SM00267 diguanylate cyclase AFR_RS17505 SM00267 diguanylate cyclase AFR_RS17515 SM00052 Putative diguanylate phosphodiesterase AFR_RS17515 SM00267 diguanylate cyclase AFR_RS17590 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS17620 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS17665 SM00354 helix_turn _helix lactose operon repressor AFR_RS17670 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS17680 SM00458 Ricin-type beta-trefoil AFR_RS17700 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS17715 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS17715 SM00895 AFR_RS17715 AFR_RS17740 SM00606 Cellulose Binding Domain Type IV AFR_RS17740 SM01217 AFR_RS17740 AFR_RS17785 SM00633 Glycosyl hydrolase family 10 AFR_RS17785 SM00637 AFR_RS17785 AFR_RS17790 SM00421 helix_turn_helix, Lux Regulon AFR_RS17790 SM00448 cheY-homologous receiver domain AFR_RS17815 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFR_RS17815 SM00475 5'-3' exonuclease AFR_RS17860 SM00633 Glycosyl hydrolase family 10 AFR_RS17865 SM00637 AFR_RS17865 AFR_RS17895 SM00448 cheY-homologous receiver domain AFR_RS17935 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS17945 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS17950 SM00052 Putative diguanylate phosphodiesterase AFR_RS17950 SM00267 diguanylate cyclase AFR_RS17985 SM00327 von Willebrand factor (vWF) type A domain AFR_RS18025 SM00656 AFR_RS18025 AFR_RS18025 SM00710 Parallel beta-helix repeats AFR_RS18030 SM00637 AFR_RS18030 AFR_RS18050 SM00563 Phosphate acyltransferases AFR_RS18060 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS18060 SM00895 AFR_RS18060 AFR_RS18095 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS18125 SM01217 AFR_RS18125 AFR_RS18145 SM00354 helix_turn _helix lactose operon repressor AFR_RS18150 SM00633 Glycosyl hydrolase family 10 AFR_RS18175 SM00633 Glycosyl hydrolase family 10 AFR_RS18175 SM00637 AFR_RS18175 AFR_RS18180 SM00637 AFR_RS18180 AFR_RS18185 SM00327 von Willebrand factor (vWF) type A domain AFR_RS18190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_RS18190 SM00292 breast cancer carboxy-terminal domain AFR_RS18190 SM00532 Ligase N family AFR_RS18225 SM00382 ATPases associated with a variety of cellular activities AFR_RS18255 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS18280 SM00944 Pro-kumamolisin, activation domain AFR_RS18285 SM00052 Putative diguanylate phosphodiesterase AFR_RS18285 SM00267 diguanylate cyclase AFR_RS18330 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_RS18355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS18355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS18360 SM00382 ATPases associated with a variety of cellular activities AFR_RS18400 SM00267 diguanylate cyclase AFR_RS18425 SM00354 helix_turn _helix lactose operon repressor AFR_RS18450 SM00354 helix_turn _helix lactose operon repressor AFR_RS18470 SM00382 ATPases associated with a variety of cellular activities AFR_RS18475 SM00382 ATPases associated with a variety of cellular activities AFR_RS18490 SM00245 tail specific protease AFR_RS18525 SM00382 ATPases associated with a variety of cellular activities AFR_RS18545 SM00862 Transcriptional regulatory protein, C terminal AFR_RS18545 SM01043 Bacterial transcriptional activator domain AFR_RS18595 SM00382 ATPases associated with a variety of cellular activities AFR_RS18615 SM00382 ATPases associated with a variety of cellular activities AFR_RS18630 SM01209 AFR_RS18630 AFR_RS18680 SM00823 Phosphopantetheine attachment site AFR_RS18680 SM01294 AFR_RS18680 AFR_RS18685 SM00823 Phosphopantetheine attachment site AFR_RS18685 SM01294 AFR_RS18685 AFR_RS18690 SM00823 Phosphopantetheine attachment site AFR_RS18690 SM01294 AFR_RS18690 AFR_RS18695 SM00823 Phosphopantetheine attachment site AFR_RS18695 SM00824 Thioesterase AFR_RS18700 SM00923 MbtH-like protein AFR_RS18720 SM00421 helix_turn_helix, Lux Regulon AFR_RS18720 SM00448 cheY-homologous receiver domain AFR_RS18765 SM00267 diguanylate cyclase AFR_RS18810 SM00862 Transcriptional regulatory protein, C terminal AFR_RS18820 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFR_RS18860 SM00020 Trypsin-like serine protease AFR_RS18870 SM00822 AFR_RS18870 AFR_RS18880 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS18960 SM00382 ATPases associated with a variety of cellular activities AFR_RS18975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS18985 SM00458 Ricin-type beta-trefoil AFR_RS19000 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS19015 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_RS19065 SM00267 diguanylate cyclase AFR_RS19070 SM00637 AFR_RS19070 AFR_RS19075 SM00637 AFR_RS19075 AFR_RS19080 SM00637 AFR_RS19080 AFR_RS19085 SM00637 AFR_RS19085 AFR_RS19090 SM00354 helix_turn _helix lactose operon repressor AFR_RS19100 SM00382 ATPases associated with a variety of cellular activities AFR_RS19155 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFR_RS19165 SM00382 ATPases associated with a variety of cellular activities AFR_RS19170 SM00368 Leucine rich repeat, ribonuclease inhibitor type AFR_RS19190 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_RS19195 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_RS19205 SM00903 Flavin reductase like domain AFR_RS19230 SM00248 ankyrin repeats AFR_RS19265 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS19295 SM00052 Putative diguanylate phosphodiesterase AFR_RS19295 SM00267 diguanylate cyclase AFR_RS19315 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS19340 SM00052 Putative diguanylate phosphodiesterase AFR_RS19340 SM00267 diguanylate cyclase AFR_RS19370 SM00873 B3/4 domain AFR_RS19380 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS19405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS19405 SM00387 Histidine kinase-like ATPases AFR_RS19405 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS19410 SM00448 cheY-homologous receiver domain AFR_RS19410 SM00862 Transcriptional regulatory protein, C terminal AFR_RS19425 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS19425 SM00267 diguanylate cyclase AFR_RS19430 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS19445 SM00998 Adenylosuccinate lyase C-terminus AFR_RS19460 SM00882 Coenzyme A transferase AFR_RS19465 SM00882 Coenzyme A transferase AFR_RS19490 SM00382 ATPases associated with a variety of cellular activities AFR_RS19530 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS19555 SM00632 AFR_RS19555 AFR_RS19555 SM00642 Alpha-amylase domain AFR_RS19555 SM01065 Starch binding domain AFR_RS19560 SM00354 helix_turn _helix lactose operon repressor AFR_RS19580 SM00829 Enoylreductase AFR_RS19615 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS19645 SM00448 cheY-homologous receiver domain AFR_RS19645 SM00862 Transcriptional regulatory protein, C terminal AFR_RS19650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS19650 SM00387 Histidine kinase-like ATPases AFR_RS19650 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS19670 SM01001 AIR carboxylase AFR_RS19680 SM00354 helix_turn _helix lactose operon repressor AFR_RS19700 SM00382 ATPases associated with a variety of cellular activities AFR_RS19750 SM00637 AFR_RS19750 AFR_RS19755 SM00637 AFR_RS19755 AFR_RS19840 SM00052 Putative diguanylate phosphodiesterase AFR_RS19860 SM00341 Helicase and RNase D C-terminal AFR_RS19860 SM00487 DEAD-like helicases superfamily AFR_RS19860 SM00490 helicase superfamily c-terminal domain AFR_RS19860 SM00956 AFR_RS19860 AFR_RS19880 SM00331 Sigma factor PP2C-like phosphatases AFR_RS19955 SM00422 helix_turn_helix, mercury resistance AFR_RS19970 SM01022 AFR_RS19970 AFR_RS19990 SM00387 Histidine kinase-like ATPases AFR_RS20000 SM00829 Enoylreductase AFR_RS20010 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS20080 SM00382 ATPases associated with a variety of cellular activities AFR_RS20090 SM00387 Histidine kinase-like ATPases AFR_RS20095 SM00421 helix_turn_helix, Lux Regulon AFR_RS20095 SM00448 cheY-homologous receiver domain AFR_RS20120 SM00448 cheY-homologous receiver domain AFR_RS20125 SM00091 PAS domain AFR_RS20125 SM00387 Histidine kinase-like ATPases AFR_RS20140 SM00354 helix_turn _helix lactose operon repressor AFR_RS20165 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS20175 SM00422 helix_turn_helix, mercury resistance AFR_RS20220 SM00382 ATPases associated with a variety of cellular activities AFR_RS20265 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS20300 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS20305 SM00382 ATPases associated with a variety of cellular activities AFR_RS20340 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS20350 SM00091 PAS domain AFR_RS20350 SM00267 diguanylate cyclase AFR_RS20370 SM00382 ATPases associated with a variety of cellular activities AFR_RS20375 SM00028 Tetratricopeptide repeats AFR_RS20385 SM00460 Transglutaminase/protease-like homologues AFR_RS20420 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS20420 SM00866 AFR_RS20420 AFR_RS20450 SM00421 helix_turn_helix, Lux Regulon AFR_RS20450 SM00448 cheY-homologous receiver domain AFR_RS20475 SM00382 ATPases associated with a variety of cellular activities AFR_RS20485 SM00448 cheY-homologous receiver domain AFR_RS20485 SM00862 Transcriptional regulatory protein, C terminal AFR_RS20490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS20490 SM00387 Histidine kinase-like ATPases AFR_RS20490 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS20525 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS20545 SM00421 helix_turn_helix, Lux Regulon AFR_RS20545 SM00448 cheY-homologous receiver domain AFR_RS20580 SM01060 AFR_RS20580 AFR_RS20595 SM00382 ATPases associated with a variety of cellular activities AFR_RS20595 SM00930 AFR_RS20595 AFR_RS20610 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS20630 SM00495 Chitin-binding domain type 3 AFR_RS20630 SM00636 AFR_RS20630 AFR_RS20650 SM00855 Phosphoglycerate mutase family AFR_RS20660 SM00822 AFR_RS20660 AFR_RS20670 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_RS20680 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_RS20695 SM00382 ATPases associated with a variety of cellular activities AFR_RS20705 SM00354 helix_turn _helix lactose operon repressor AFR_RS20710 SM00354 helix_turn _helix lactose operon repressor AFR_RS20735 SM00448 cheY-homologous receiver domain AFR_RS20735 SM00862 Transcriptional regulatory protein, C terminal AFR_RS20740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS20740 SM00387 Histidine kinase-like ATPases AFR_RS20740 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS20750 SM00382 ATPases associated with a variety of cellular activities AFR_RS20770 SM00421 helix_turn_helix, Lux Regulon AFR_RS20850 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS20850 SM00866 AFR_RS20850 AFR_RS20895 SM00382 ATPases associated with a variety of cellular activities AFR_RS20920 SM00354 helix_turn _helix lactose operon repressor AFR_RS20940 SM00354 helix_turn _helix lactose operon repressor AFR_RS21005 SM01110 AFR_RS21005 AFR_RS21010 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS21010 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_RS21020 SM00052 Putative diguanylate phosphodiesterase AFR_RS21020 SM00091 PAS domain AFR_RS21020 SM00267 diguanylate cyclase AFR_RS21070 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS21075 SM00421 helix_turn_helix, Lux Regulon AFR_RS21075 SM00448 cheY-homologous receiver domain AFR_RS21085 SM00382 ATPases associated with a variety of cellular activities AFR_RS21120 SM00382 ATPases associated with a variety of cellular activities AFR_RS21170 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS21210 SM00382 ATPases associated with a variety of cellular activities AFR_RS21225 SM00327 von Willebrand factor (vWF) type A domain AFR_RS21255 SM00240 Forkhead associated domain AFR_RS21260 SM00422 helix_turn_helix, mercury resistance AFR_RS21270 SM00422 helix_turn_helix, mercury resistance AFR_RS21310 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS21325 SM00448 cheY-homologous receiver domain AFR_RS21325 SM00862 Transcriptional regulatory protein, C terminal AFR_RS21330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS21330 SM00387 Histidine kinase-like ATPases AFR_RS21330 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS21335 SM00487 DEAD-like helicases superfamily AFR_RS21335 SM00490 helicase superfamily c-terminal domain AFR_RS21435 SM00382 ATPases associated with a variety of cellular activities AFR_RS21450 SM00421 helix_turn_helix, Lux Regulon AFR_RS21450 SM00448 cheY-homologous receiver domain AFR_RS21470 SM00382 ATPases associated with a variety of cellular activities AFR_RS21520 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS21550 SM00382 ATPases associated with a variety of cellular activities AFR_RS21580 SM00563 Phosphate acyltransferases AFR_RS21600 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS21625 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS21655 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS21675 SM00889 Elongation factor G, domain IV AFR_RS21725 SM00421 helix_turn_helix, Lux Regulon AFR_RS21725 SM00448 cheY-homologous receiver domain AFR_RS21745 SM00421 helix_turn_helix, Lux Regulon AFR_RS21745 SM00448 cheY-homologous receiver domain AFR_RS21775 SM00422 helix_turn_helix, mercury resistance AFR_RS21805 SM00052 Putative diguanylate phosphodiesterase AFR_RS21805 SM00267 diguanylate cyclase AFR_RS21810 SM00897 FIST N domain AFR_RS21810 SM01204 AFR_RS21810 AFR_RS21825 SM00354 helix_turn _helix lactose operon repressor AFR_RS21855 SM00421 helix_turn_helix, Lux Regulon AFR_RS21855 SM00448 cheY-homologous receiver domain AFR_RS21925 SM00073 Histidine Phosphotransfer domain AFR_RS21925 SM00091 PAS domain AFR_RS21925 SM00387 Histidine kinase-like ATPases AFR_RS21925 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS21925 SM00448 cheY-homologous receiver domain AFR_RS22005 SM00448 cheY-homologous receiver domain AFR_RS22005 SM00862 Transcriptional regulatory protein, C terminal AFR_RS22015 SM00344 helix_turn_helix ASNC type AFR_RS22025 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFR_RS22025 SM00475 5'-3' exonuclease AFR_RS22030 SM00052 Putative diguanylate phosphodiesterase AFR_RS22030 SM00091 PAS domain AFR_RS22030 SM00267 diguanylate cyclase AFR_RS22085 SM00421 helix_turn_helix, Lux Regulon AFR_RS22085 SM00448 cheY-homologous receiver domain AFR_RS22095 SM00382 ATPases associated with a variety of cellular activities AFR_RS22135 SM00327 von Willebrand factor (vWF) type A domain AFR_RS22135 SM00609 Vault protein Inter-alpha-Trypsin domain AFR_RS22175 SM00421 helix_turn_helix, Lux Regulon AFR_RS22175 SM00448 cheY-homologous receiver domain AFR_RS22180 SM00387 Histidine kinase-like ATPases AFR_RS22220 SM00382 ATPases associated with a variety of cellular activities AFR_RS22235 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS22255 SM00458 Ricin-type beta-trefoil AFR_RS22305 SM00563 Phosphate acyltransferases AFR_RS22330 SM00421 helix_turn_helix, Lux Regulon AFR_RS22330 SM00448 cheY-homologous receiver domain AFR_RS22345 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS22345 SM00387 Histidine kinase-like ATPases AFR_RS22370 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS22400 SM00450 Rhodanese Homology Domain AFR_RS22410 SM00382 ATPases associated with a variety of cellular activities AFR_RS22415 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS22460 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS22470 SM00382 ATPases associated with a variety of cellular activities AFR_RS22515 SM00382 ATPases associated with a variety of cellular activities AFR_RS22540 SM00382 ATPases associated with a variety of cellular activities AFR_RS22570 SM01130 AFR_RS22570 AFR_RS22615 SM00354 helix_turn _helix lactose operon repressor AFR_RS22680 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS22710 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_RS22710 SM01134 AFR_RS22710 AFR_RS22770 SM00382 ATPases associated with a variety of cellular activities AFR_RS22775 SM00422 helix_turn_helix, mercury resistance AFR_RS22785 SM00382 ATPases associated with a variety of cellular activities AFR_RS22830 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS22870 SM00710 Parallel beta-helix repeats AFR_RS22875 SM00710 Parallel beta-helix repeats AFR_RS22880 SM00984 UDP binding domain AFR_RS22890 SM01192 AFR_RS22890 AFR_RS22890 SM01193 AFR_RS22890 AFR_RS22895 SM00422 helix_turn_helix, mercury resistance AFR_RS22900 SM00852 Probable molybdopterin binding domain AFR_RS22920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS22920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS22940 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_RS22965 SM00448 cheY-homologous receiver domain AFR_RS22965 SM00862 Transcriptional regulatory protein, C terminal AFR_RS23025 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS23040 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS23065 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS23100 SM00829 Enoylreductase AFR_RS23105 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS23115 SM00060 Fibronectin type 3 domain AFR_RS23200 SM00822 AFR_RS23200 AFR_RS23210 SM00421 helix_turn_helix, Lux Regulon AFR_RS23225 SM00855 Phosphoglycerate mutase family AFR_RS23280 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS23310 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS23340 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS23390 SM01120 AFR_RS23390 AFR_RS23405 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS23425 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AFR_RS23440 SM00849 Metallo-beta-lactamase superfamily AFR_RS23445 SM00155 Phospholipase D. Active site motifs. AFR_RS23550 SM01060 AFR_RS23550 AFR_RS23555 SM00458 Ricin-type beta-trefoil AFR_RS23620 SM00448 cheY-homologous receiver domain AFR_RS23620 SM00862 Transcriptional regulatory protein, C terminal AFR_RS23625 SM00387 Histidine kinase-like ATPases AFR_RS23625 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS23675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS23685 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS23750 SM00421 helix_turn_helix, Lux Regulon AFR_RS23780 SM00382 ATPases associated with a variety of cellular activities AFR_RS23790 SM00382 ATPases associated with a variety of cellular activities AFR_RS23815 SM00923 MbtH-like protein AFR_RS23820 SM00823 Phosphopantetheine attachment site AFR_RS23825 SM00823 Phosphopantetheine attachment site AFR_RS23830 SM00823 Phosphopantetheine attachment site AFR_RS23845 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS23895 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_RS23905 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS23980 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS24005 SM00822 AFR_RS24005 AFR_RS24075 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS24140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS24140 SM00387 Histidine kinase-like ATPases AFR_RS24140 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS24145 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS24145 SM00387 Histidine kinase-like ATPases AFR_RS24145 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS24190 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS24200 SM00382 ATPases associated with a variety of cellular activities AFR_RS24205 SM00448 cheY-homologous receiver domain AFR_RS24205 SM00862 Transcriptional regulatory protein, C terminal AFR_RS24210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS24210 SM00387 Histidine kinase-like ATPases AFR_RS24215 SM00606 Cellulose Binding Domain Type IV AFR_RS24245 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_RS24245 SM01134 AFR_RS24245 AFR_RS24320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_RS24320 SM00091 PAS domain AFR_RS24320 SM00387 Histidine kinase-like ATPases AFR_RS24320 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS24320 SM00448 cheY-homologous receiver domain AFR_RS24335 SM00642 Alpha-amylase domain AFR_RS24340 SM00421 helix_turn_helix, Lux Regulon AFR_RS24340 SM00448 cheY-homologous receiver domain AFR_RS24350 SM00382 ATPases associated with a variety of cellular activities AFR_RS24360 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_RS24375 SM00382 ATPases associated with a variety of cellular activities AFR_RS24430 SM00331 Sigma factor PP2C-like phosphatases AFR_RS24485 SM00822 AFR_RS24485 AFR_RS24515 SM00829 Enoylreductase AFR_RS24530 SM00382 ATPases associated with a variety of cellular activities AFR_RS24545 SM00448 cheY-homologous receiver domain AFR_RS24545 SM00862 Transcriptional regulatory protein, C terminal AFR_RS24550 SM00387 Histidine kinase-like ATPases AFR_RS24550 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS24560 SM00382 ATPases associated with a variety of cellular activities AFR_RS24565 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS24610 SM00947 Carbonic anhydrase AFR_RS24640 SM00422 helix_turn_helix, mercury resistance AFR_RS24655 SM00354 helix_turn _helix lactose operon repressor AFR_RS24665 SM00052 Putative diguanylate phosphodiesterase AFR_RS24665 SM00091 PAS domain AFR_RS24665 SM00267 diguanylate cyclase AFR_RS24670 SM00889 Elongation factor G, domain IV AFR_RS24725 SM00487 DEAD-like helicases superfamily AFR_RS24725 SM00490 helicase superfamily c-terminal domain AFR_RS24745 SM00421 helix_turn_helix, Lux Regulon AFR_RS24745 SM00448 cheY-homologous receiver domain AFR_RS24810 SM00642 Alpha-amylase domain AFR_RS24825 SM00382 ATPases associated with a variety of cellular activities AFR_RS24835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS24885 SM00637 AFR_RS24885 AFR_RS24905 SM00560 LamG-like jellyroll fold domain AFR_RS24905 SM00776 AFR_RS24905 AFR_RS24905 SM01038 Beta galactosidase small chain AFR_RS24930 SM00331 Sigma factor PP2C-like phosphatases AFR_RS24930 SM01012 AFR_RS24930 AFR_RS24935 SM00460 Transglutaminase/protease-like homologues AFR_RS24965 SM01350 AFR_RS24965 AFR_RS24970 SM00052 Putative diguanylate phosphodiesterase AFR_RS24970 SM00267 diguanylate cyclase AFR_RS24980 SM00421 helix_turn_helix, Lux Regulon AFR_RS24980 SM00448 cheY-homologous receiver domain AFR_RS25055 SM00487 DEAD-like helicases superfamily AFR_RS25055 SM00490 helicase superfamily c-terminal domain AFR_RS25080 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS25120 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS25205 SM00382 ATPases associated with a variety of cellular activities AFR_RS25215 SM00849 Metallo-beta-lactamase superfamily AFR_RS25235 SM00354 helix_turn _helix lactose operon repressor AFR_RS25250 SM00421 helix_turn_helix, Lux Regulon AFR_RS25290 SM00060 Fibronectin type 3 domain AFR_RS25345 SM00813 Alpha-L-arabinofuranosidase C-terminus AFR_RS25410 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_RS25425 SM00354 helix_turn _helix lactose operon repressor AFR_RS25460 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS25495 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS25500 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS25525 SM00458 Ricin-type beta-trefoil AFR_RS25610 SM00382 ATPases associated with a variety of cellular activities AFR_RS25630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS25630 SM00387 Histidine kinase-like ATPases AFR_RS25630 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS25640 SM00448 cheY-homologous receiver domain AFR_RS25640 SM00862 Transcriptional regulatory protein, C terminal AFR_RS25675 SM00382 ATPases associated with a variety of cellular activities AFR_RS25690 SM01007 Class II Aldolase and Adducin N-terminal domain AFR_RS25700 SM00354 helix_turn _helix lactose operon repressor AFR_RS25745 SM00267 diguanylate cyclase AFR_RS25760 SM00382 ATPases associated with a variety of cellular activities AFR_RS25795 SM00421 helix_turn_helix, Lux Regulon AFR_RS25795 SM00448 cheY-homologous receiver domain AFR_RS25800 SM00387 Histidine kinase-like ATPases AFR_RS25810 SM00382 ATPases associated with a variety of cellular activities AFR_RS25815 SM00260 Two component signalling adaptor domain AFR_RS25820 SM00138 Methyltransferase, chemotaxis proteins AFR_RS25830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS25835 SM00073 Histidine Phosphotransfer domain AFR_RS25835 SM00260 Two component signalling adaptor domain AFR_RS25835 SM00387 Histidine kinase-like ATPases AFR_RS25835 SM00448 cheY-homologous receiver domain AFR_RS25840 SM00448 cheY-homologous receiver domain AFR_RS25845 SM00387 Histidine kinase-like ATPases AFR_RS25845 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS25845 SM00448 cheY-homologous receiver domain AFR_RS25850 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFR_RS25875 SM00382 ATPases associated with a variety of cellular activities AFR_RS25885 SM00421 helix_turn_helix, Lux Regulon AFR_RS25885 SM00448 cheY-homologous receiver domain AFR_RS25905 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS25915 SM00495 Chitin-binding domain type 3 AFR_RS25925 SM00052 Putative diguanylate phosphodiesterase AFR_RS25935 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS26030 SM00829 Enoylreductase AFR_RS26045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_RS26065 SM00052 Putative diguanylate phosphodiesterase AFR_RS26065 SM00267 diguanylate cyclase AFR_RS26070 SM00052 Putative diguanylate phosphodiesterase AFR_RS26070 SM00267 diguanylate cyclase AFR_RS26075 SM00255 Toll - interleukin 1 - resistance AFR_RS26085 SM00028 Tetratricopeptide repeats AFR_RS26090 SM00382 ATPases associated with a variety of cellular activities AFR_RS26100 SM00028 Tetratricopeptide repeats AFR_RS26100 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS26100 SM00862 Transcriptional regulatory protein, C terminal AFR_RS26100 SM01043 Bacterial transcriptional activator domain AFR_RS26125 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS26155 SM00637 AFR_RS26155 AFR_RS26160 SM00637 AFR_RS26160 AFR_RS26165 SM00421 helix_turn_helix, Lux Regulon AFR_RS26165 SM00448 cheY-homologous receiver domain AFR_RS26215 SM00327 von Willebrand factor (vWF) type A domain AFR_RS26255 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_RS26275 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS26300 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS26300 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS26300 SM00606 Cellulose Binding Domain Type IV AFR_RS26305 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS26330 SM00421 helix_turn_helix, Lux Regulon AFR_RS26330 SM00448 cheY-homologous receiver domain AFR_RS26340 SM00382 ATPases associated with a variety of cellular activities AFR_RS26360 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS26375 SM00331 Sigma factor PP2C-like phosphatases AFR_RS26375 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_RS26380 SM00327 von Willebrand factor (vWF) type A domain AFR_RS26385 SM00240 Forkhead associated domain AFR_RS26420 SM00656 AFR_RS26420 AFR_RS26430 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS26445 SM00354 helix_turn _helix lactose operon repressor AFR_RS26455 SM00487 DEAD-like helicases superfamily AFR_RS26455 SM00490 helicase superfamily c-terminal domain AFR_RS26455 SM01142 AFR_RS26455 AFR_RS26470 SM00046 Diacylglycerol kinase catalytic domain (presumed) AFR_RS26515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS26555 SM00382 ATPases associated with a variety of cellular activities AFR_RS26585 SM00421 helix_turn_helix, Lux Regulon AFR_RS26585 SM00448 cheY-homologous receiver domain AFR_RS26600 SM00382 ATPases associated with a variety of cellular activities AFR_RS26640 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS26690 SM00387 Histidine kinase-like ATPases AFR_RS26695 SM00421 helix_turn_helix, Lux Regulon AFR_RS26695 SM00448 cheY-homologous receiver domain AFR_RS26700 SM01018 B12 binding domain AFR_RS26710 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS26725 SM00382 ATPases associated with a variety of cellular activities AFR_RS26730 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS26745 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS26745 SM00866 AFR_RS26745 AFR_RS26750 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS26775 SM00855 Phosphoglycerate mutase family AFR_RS26825 SM00382 ATPases associated with a variety of cellular activities AFR_RS26825 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_RS26850 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AFR_RS26885 SM00862 Transcriptional regulatory protein, C terminal AFR_RS26895 SM00248 ankyrin repeats AFR_RS26905 SM00957 SecA DEAD-like domain AFR_RS26905 SM00958 SecA preprotein cross-linking domain AFR_RS26910 SM00382 ATPases associated with a variety of cellular activities AFR_RS26925 SM00091 PAS domain AFR_RS26925 SM00138 Methyltransferase, chemotaxis proteins AFR_RS26950 SM00704 CDGSH-type zinc finger. Function unknown. AFR_RS26955 SM01236 AFR_RS26955 AFR_RS27005 SM00421 helix_turn_helix, Lux Regulon AFR_RS27005 SM00448 cheY-homologous receiver domain AFR_RS27010 SM00387 Histidine kinase-like ATPases AFR_RS27015 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS27055 SM00327 von Willebrand factor (vWF) type A domain AFR_RS27055 SM00382 ATPases associated with a variety of cellular activities AFR_RS27080 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS27100 SM00052 Putative diguanylate phosphodiesterase AFR_RS27100 SM00267 diguanylate cyclase AFR_RS27110 SM00331 Sigma factor PP2C-like phosphatases AFR_RS27140 SM00052 Putative diguanylate phosphodiesterase AFR_RS27140 SM00267 diguanylate cyclase AFR_RS27145 SM00382 ATPases associated with a variety of cellular activities AFR_RS27145 SM00487 DEAD-like helicases superfamily AFR_RS27145 SM00490 helicase superfamily c-terminal domain AFR_RS27145 SM00847 Helicase associated domain (HA2) Add an annotation AFR_RS27155 SM00448 cheY-homologous receiver domain AFR_RS27160 SM00387 Histidine kinase-like ATPases AFR_RS27160 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS27160 SM01079 AFR_RS27160 AFR_RS27165 SM00047 Lysozyme subfamily 2 AFR_RS27165 SM00287 Bacterial SH3 domain homologues AFR_RS27170 SM00014 Acid phosphatase homologues AFR_RS27220 SM00642 Alpha-amylase domain AFR_RS27225 SM00642 Alpha-amylase domain AFR_RS27235 SM00642 Alpha-amylase domain AFR_RS27270 SM00331 Sigma factor PP2C-like phosphatases AFR_RS27270 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_RS27275 SM00421 helix_turn_helix, Lux Regulon AFR_RS27280 SM00829 Enoylreductase AFR_RS27285 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_RS27285 SM00732 Likely ribonuclease with RNase H fold. AFR_RS27290 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS27300 SM00327 von Willebrand factor (vWF) type A domain AFR_RS27310 SM00382 ATPases associated with a variety of cellular activities AFR_RS27325 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_RS27335 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_RS27340 SM00421 helix_turn_helix, Lux Regulon AFR_RS27340 SM00448 cheY-homologous receiver domain AFR_RS27370 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_RS27400 SM00331 Sigma factor PP2C-like phosphatases AFR_RS27400 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_RS27420 SM00637 AFR_RS27420 AFR_RS27445 SM00560 LamG-like jellyroll fold domain AFR_RS27460 SM00984 UDP binding domain AFR_RS27465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS27465 SM00267 diguanylate cyclase AFR_RS27470 SM00354 helix_turn _helix lactose operon repressor AFR_RS27530 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS27555 SM00421 helix_turn_helix, Lux Regulon AFR_RS27565 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS27660 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS27690 SM00382 ATPases associated with a variety of cellular activities AFR_RS27715 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS27725 SM00052 Putative diguanylate phosphodiesterase AFR_RS27725 SM00267 diguanylate cyclase AFR_RS27755 SM00382 ATPases associated with a variety of cellular activities AFR_RS27770 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS27775 SM00382 ATPases associated with a variety of cellular activities AFR_RS27780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS27780 SM00387 Histidine kinase-like ATPases AFR_RS27780 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS27785 SM00448 cheY-homologous receiver domain AFR_RS27785 SM00862 Transcriptional regulatory protein, C terminal AFR_RS27800 SM00382 ATPases associated with a variety of cellular activities AFR_RS27825 SM00020 Trypsin-like serine protease AFR_RS27830 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS27845 SM00642 Alpha-amylase domain AFR_RS27850 SM00642 Alpha-amylase domain AFR_RS27910 SM00344 helix_turn_helix ASNC type AFR_RS27935 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS27935 SM00458 Ricin-type beta-trefoil AFR_RS27945 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS28050 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS28100 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFR_RS28105 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS28105 SM01012 AFR_RS28105 AFR_RS28110 SM01012 AFR_RS28110 AFR_RS28135 SM00282 Laminin G domain AFR_RS28160 SM00052 Putative diguanylate phosphodiesterase AFR_RS28160 SM00091 PAS domain AFR_RS28160 SM00267 diguanylate cyclase AFR_RS28235 SM00631 AFR_RS28235 AFR_RS28245 SM00387 Histidine kinase-like ATPases AFR_RS28250 SM00960 Roadblock/LC7 domain AFR_RS28270 SM00267 diguanylate cyclase AFR_RS28320 SM00460 Transglutaminase/protease-like homologues AFR_RS28335 SM00060 Fibronectin type 3 domain AFR_RS28340 SM00387 Histidine kinase-like ATPases AFR_RS28340 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS28345 SM00448 cheY-homologous receiver domain AFR_RS28345 SM00862 Transcriptional regulatory protein, C terminal AFR_RS28350 SM00862 Transcriptional regulatory protein, C terminal AFR_RS28350 SM01043 Bacterial transcriptional activator domain AFR_RS28355 SM00421 helix_turn_helix, Lux Regulon AFR_RS28360 SM00448 cheY-homologous receiver domain AFR_RS28360 SM00862 Transcriptional regulatory protein, C terminal AFR_RS28385 SM00060 Fibronectin type 3 domain AFR_RS28385 SM00637 AFR_RS28385 AFR_RS28440 SM00052 Putative diguanylate phosphodiesterase AFR_RS28465 SM00421 helix_turn_helix, Lux Regulon AFR_RS28515 SM00878 Biotin carboxylase C-terminal domain AFR_RS28540 SM00849 Metallo-beta-lactamase superfamily AFR_RS28570 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_RS28575 SM00606 Cellulose Binding Domain Type IV AFR_RS28605 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS28605 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS28605 SM00267 diguanylate cyclase AFR_RS28610 SM00458 Ricin-type beta-trefoil AFR_RS28615 SM00060 Fibronectin type 3 domain AFR_RS28615 SM00458 Ricin-type beta-trefoil AFR_RS28625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS28625 SM00387 Histidine kinase-like ATPases AFR_RS28625 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS28630 SM00448 cheY-homologous receiver domain AFR_RS28630 SM00862 Transcriptional regulatory protein, C terminal AFR_RS28635 SM00020 Trypsin-like serine protease AFR_RS28640 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS28665 SM00829 Enoylreductase AFR_RS28675 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS28710 SM00331 Sigma factor PP2C-like phosphatases AFR_RS28725 SM00382 ATPases associated with a variety of cellular activities AFR_RS28735 SM00448 cheY-homologous receiver domain AFR_RS28735 SM00862 Transcriptional regulatory protein, C terminal AFR_RS28740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS28740 SM00387 Histidine kinase-like ATPases AFR_RS28740 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS28745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS28745 SM00387 Histidine kinase-like ATPases AFR_RS28745 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS28750 SM00448 cheY-homologous receiver domain AFR_RS28750 SM00862 Transcriptional regulatory protein, C terminal AFR_RS28800 SM00895 AFR_RS28800 AFR_RS28830 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_RS28830 SM00091 PAS domain AFR_RS28830 SM00387 Histidine kinase-like ATPases AFR_RS28830 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS28830 SM00448 cheY-homologous receiver domain AFR_RS28840 SM00822 AFR_RS28840 AFR_RS28845 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS28895 SM00421 helix_turn_helix, Lux Regulon AFR_RS28895 SM00448 cheY-homologous receiver domain AFR_RS28905 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS28925 SM00421 helix_turn_helix, Lux Regulon AFR_RS28940 SM00382 ATPases associated with a variety of cellular activities AFR_RS28950 SM00387 Histidine kinase-like ATPases AFR_RS28955 SM00421 helix_turn_helix, Lux Regulon AFR_RS28955 SM00448 cheY-homologous receiver domain AFR_RS28960 SM00422 helix_turn_helix, mercury resistance AFR_RS28975 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS28995 SM00382 ATPases associated with a variety of cellular activities AFR_RS29005 SM00829 Enoylreductase AFR_RS29020 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS29025 SM00422 helix_turn_helix, mercury resistance AFR_RS29030 SM00822 AFR_RS29030 AFR_RS29045 SM00421 helix_turn_helix, Lux Regulon AFR_RS29075 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS29075 SM00387 Histidine kinase-like ATPases AFR_RS29080 SM00421 helix_turn_helix, Lux Regulon AFR_RS29080 SM00448 cheY-homologous receiver domain AFR_RS29085 SM00448 cheY-homologous receiver domain AFR_RS29135 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS29165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS29165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS29185 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS29195 SM00606 Cellulose Binding Domain Type IV AFR_RS29205 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS29205 SM00895 AFR_RS29205 AFR_RS29225 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_RS29245 SM00829 Enoylreductase AFR_RS29265 SM00829 Enoylreductase AFR_RS29275 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS29280 SM00458 Ricin-type beta-trefoil AFR_RS29285 SM00458 Ricin-type beta-trefoil AFR_RS29290 SM00458 Ricin-type beta-trefoil AFR_RS29295 SM00458 Ricin-type beta-trefoil AFR_RS29300 SM00458 Ricin-type beta-trefoil AFR_RS29300 SM00710 Parallel beta-helix repeats AFR_RS29305 SM00606 Cellulose Binding Domain Type IV AFR_RS29310 SM00458 Ricin-type beta-trefoil AFR_RS29315 SM00458 Ricin-type beta-trefoil AFR_RS29320 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS29320 SM00458 Ricin-type beta-trefoil AFR_RS29320 SM00606 Cellulose Binding Domain Type IV AFR_RS29325 SM00458 Ricin-type beta-trefoil AFR_RS29330 SM00458 Ricin-type beta-trefoil AFR_RS29340 SM00382 ATPases associated with a variety of cellular activities AFR_RS29350 SM00923 MbtH-like protein AFR_RS29355 SM00823 Phosphopantetheine attachment site AFR_RS29360 SM00849 Metallo-beta-lactamase superfamily AFR_RS29400 SM00919 Malic enzyme, NAD binding domain AFR_RS29400 SM01274 AFR_RS29400 AFR_RS29440 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS29500 SM01321 AFR_RS29500 AFR_RS29530 SM00382 ATPases associated with a variety of cellular activities AFR_RS29540 SM00448 cheY-homologous receiver domain AFR_RS29540 SM00862 Transcriptional regulatory protein, C terminal AFR_RS29545 SM00387 Histidine kinase-like ATPases AFR_RS29545 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS29570 SM00862 Transcriptional regulatory protein, C terminal AFR_RS29570 SM01043 Bacterial transcriptional activator domain AFR_RS29585 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS29595 SM00822 AFR_RS29595 AFR_RS29645 SM00382 ATPases associated with a variety of cellular activities AFR_RS29695 SM00487 DEAD-like helicases superfamily AFR_RS29695 SM00490 helicase superfamily c-terminal domain AFR_RS29735 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS29745 SM00382 ATPases associated with a variety of cellular activities AFR_RS29755 SM00363 S4 RNA-binding domain AFR_RS29830 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS29870 SM00829 Enoylreductase AFR_RS29900 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS29910 SM00478 endonuclease III AFR_RS30005 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AFR_RS30005 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AFR_RS30075 SM00363 S4 RNA-binding domain AFR_RS30095 SM00382 ATPases associated with a variety of cellular activities AFR_RS30115 SM00421 helix_turn_helix, Lux Regulon AFR_RS30115 SM00448 cheY-homologous receiver domain AFR_RS30200 SM00740 AFR_RS30200 AFR_RS30220 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS30235 SM00855 Phosphoglycerate mutase family AFR_RS30260 SM00813 Alpha-L-arabinofuranosidase C-terminus AFR_RS30270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS30275 SM00421 helix_turn_helix, Lux Regulon AFR_RS30275 SM00448 cheY-homologous receiver domain AFR_RS30395 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_RS30420 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_RS30430 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS30455 SM00382 ATPases associated with a variety of cellular activities AFR_RS30465 SM00421 helix_turn_helix, Lux Regulon AFR_RS30465 SM00448 cheY-homologous receiver domain AFR_RS30475 SM01217 AFR_RS30475 AFR_RS30505 SM00382 ATPases associated with a variety of cellular activities AFR_RS30515 SM00387 Histidine kinase-like ATPases AFR_RS30520 SM00421 helix_turn_helix, Lux Regulon AFR_RS30520 SM00448 cheY-homologous receiver domain AFR_RS30535 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS30540 SM00382 ATPases associated with a variety of cellular activities AFR_RS30580 SM00822 AFR_RS30580 AFR_RS30590 SM00873 B3/4 domain AFR_RS30590 SM00874 tRNA synthetase B5 domain AFR_RS30590 SM00896 Ferredoxin-fold anticodon binding domain AFR_RS30600 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFR_RS30635 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS30635 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFR_RS30645 SM00382 ATPases associated with a variety of cellular activities AFR_RS30675 SM00267 diguanylate cyclase AFR_RS30675 SM00448 cheY-homologous receiver domain AFR_RS30735 SM01409 AFR_RS30735 AFR_RS30740 SM00072 Guanylate kinase homologues. AFR_RS30750 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFR_RS30765 SM00851 MGS-like domain AFR_RS30765 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFR_RS30770 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFR_RS30790 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS30800 SM00841 Elongation factor P, C-terminal AFR_RS30800 SM01185 AFR_RS30800 AFR_RS30855 SM00732 Likely ribonuclease with RNase H fold. AFR_RS30860 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFR_RS30890 SM00382 ATPases associated with a variety of cellular activities AFR_RS30905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS30925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS30925 SM00387 Histidine kinase-like ATPases AFR_RS30925 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS30930 SM00448 cheY-homologous receiver domain AFR_RS30930 SM00862 Transcriptional regulatory protein, C terminal AFR_RS30935 SM00382 ATPases associated with a variety of cellular activities AFR_RS30975 SM00344 helix_turn_helix ASNC type AFR_RS31030 SM01119 AFR_RS31030 AFR_RS31100 SM01209 AFR_RS31100 AFR_RS31125 SM00382 ATPases associated with a variety of cellular activities AFR_RS31155 SM00822 AFR_RS31155 AFR_RS31170 SM00849 Metallo-beta-lactamase superfamily AFR_RS31185 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_RS31185 SM00954 Region found in RelA / SpoT proteins AFR_RS31205 SM01323 AFR_RS31205 AFR_RS31210 SM00382 ATPases associated with a variety of cellular activities AFR_RS31215 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_RS31270 SM00838 Elongation factor G C-terminus AFR_RS31270 SM00889 Elongation factor G, domain IV AFR_RS31285 SM00052 Putative diguanylate phosphodiesterase AFR_RS31285 SM00267 diguanylate cyclase AFR_RS31315 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFR_RS31325 SM00448 cheY-homologous receiver domain AFR_RS31325 SM00862 Transcriptional regulatory protein, C terminal AFR_RS31330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS31330 SM00387 Histidine kinase-like ATPases AFR_RS31335 SM00060 Fibronectin type 3 domain AFR_RS31360 SM00357 Cold shock protein domain AFR_RS31410 SM00487 DEAD-like helicases superfamily AFR_RS31410 SM00490 helicase superfamily c-terminal domain AFR_RS31425 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS31440 SM00421 helix_turn_helix, Lux Regulon AFR_RS31440 SM00448 cheY-homologous receiver domain AFR_RS31445 SM00387 Histidine kinase-like ATPases AFR_RS31455 SM00382 ATPases associated with a variety of cellular activities AFR_RS31520 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS31520 SM00331 Sigma factor PP2C-like phosphatases AFR_RS31585 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS31610 SM00155 Phospholipase D. Active site motifs. AFR_RS31620 SM00421 helix_turn_helix, Lux Regulon AFR_RS31620 SM00448 cheY-homologous receiver domain AFR_RS31635 SM00460 Transglutaminase/protease-like homologues AFR_RS31665 SM00606 Cellulose Binding Domain Type IV AFR_RS31690 SM00487 DEAD-like helicases superfamily AFR_RS31690 SM00490 helicase superfamily c-terminal domain AFR_RS31690 SM00847 Helicase associated domain (HA2) Add an annotation AFR_RS31695 SM00052 Putative diguanylate phosphodiesterase AFR_RS31695 SM00267 diguanylate cyclase AFR_RS31700 SM00331 Sigma factor PP2C-like phosphatases AFR_RS31700 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_RS31710 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS31715 SM01234 AFR_RS31715 AFR_RS31725 SM00642 Alpha-amylase domain AFR_RS31730 SM00642 Alpha-amylase domain AFR_RS31735 SM00642 Alpha-amylase domain AFR_RS31790 SM00052 Putative diguanylate phosphodiesterase AFR_RS31790 SM00267 diguanylate cyclase AFR_RS31795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS31795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS31810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS31810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS31840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS31840 SM00387 Histidine kinase-like ATPases AFR_RS31840 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS31865 SM00382 ATPases associated with a variety of cellular activities AFR_RS31870 SM00382 ATPases associated with a variety of cellular activities AFR_RS31880 SM00631 AFR_RS31880 AFR_RS31905 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_RS31910 SM00776 AFR_RS31910 AFR_RS31955 SM00331 Sigma factor PP2C-like phosphatases AFR_RS31960 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS32020 SM00487 DEAD-like helicases superfamily AFR_RS32020 SM00490 helicase superfamily c-terminal domain AFR_RS32030 SM00867 YceI-like domain AFR_RS32035 SM00421 helix_turn_helix, Lux Regulon AFR_RS32070 SM00354 helix_turn _helix lactose operon repressor AFR_RS32080 SM00382 ATPases associated with a variety of cellular activities AFR_RS32095 SM00382 ATPases associated with a variety of cellular activities AFR_RS32125 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS32140 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS32155 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS32165 SM00434 DNA Topoisomerase IV AFR_RS32170 SM00387 Histidine kinase-like ATPases AFR_RS32170 SM00433 TopoisomeraseII AFR_RS32175 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS32175 SM00267 diguanylate cyclase AFR_RS32180 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS32185 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AFR_RS32190 SM00421 helix_turn_helix, Lux Regulon AFR_RS32205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS32205 SM00387 Histidine kinase-like ATPases AFR_RS32205 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS32210 SM00448 cheY-homologous receiver domain AFR_RS32210 SM00862 Transcriptional regulatory protein, C terminal AFR_RS32225 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS32230 SM00564 beta-propeller repeat AFR_RS32260 SM00354 helix_turn _helix lactose operon repressor AFR_RS32290 SM00862 Transcriptional regulatory protein, C terminal AFR_RS32290 SM01043 Bacterial transcriptional activator domain AFR_RS32320 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS32370 SM00327 von Willebrand factor (vWF) type A domain AFR_RS32395 SM00465 GIY-YIG type nucleases (URI domain) AFR_RS32415 SM00506 Appr-1"-p processing enzyme AFR_RS32420 SM00382 ATPases associated with a variety of cellular activities AFR_RS32440 SM00382 ATPases associated with a variety of cellular activities AFR_RS32465 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS32475 SM00788 Adenylosuccinate synthetase AFR_RS32600 SM00091 PAS domain AFR_RS32600 SM00387 Histidine kinase-like ATPases AFR_RS32600 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS32600 SM00448 cheY-homologous receiver domain AFR_RS32610 SM00960 Roadblock/LC7 domain AFR_RS32635 SM01400 AFR_RS32635 AFR_RS32640 SM00382 ATPases associated with a variety of cellular activities AFR_RS32650 SM00382 ATPases associated with a variety of cellular activities AFR_RS32695 SM00327 von Willebrand factor (vWF) type A domain AFR_RS32700 SM00327 von Willebrand factor (vWF) type A domain AFR_RS32740 SM00458 Ricin-type beta-trefoil AFR_RS32745 SM00560 LamG-like jellyroll fold domain AFR_RS32750 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_RS32775 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS32800 SM00267 diguanylate cyclase AFR_RS32810 SM00014 Acid phosphatase homologues AFR_RS32820 SM00046 Diacylglycerol kinase catalytic domain (presumed) AFR_RS32860 SM00495 Chitin-binding domain type 3 AFR_RS32885 SM00862 Transcriptional regulatory protein, C terminal AFR_RS32905 SM00382 ATPases associated with a variety of cellular activities AFR_RS32930 SM00903 Flavin reductase like domain AFR_RS32980 SM00421 helix_turn_helix, Lux Regulon AFR_RS32980 SM00448 cheY-homologous receiver domain AFR_RS33020 SM00382 ATPases associated with a variety of cellular activities AFR_RS33040 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS33050 SM00822 AFR_RS33050 AFR_RS33080 SM00829 Enoylreductase AFR_RS33085 SM00052 Putative diguanylate phosphodiesterase AFR_RS33085 SM00267 diguanylate cyclase AFR_RS33090 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFR_RS33105 SM00421 helix_turn_helix, Lux Regulon AFR_RS33115 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS33150 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_RS33155 SM00642 Alpha-amylase domain AFR_RS33180 SM00421 helix_turn_helix, Lux Regulon AFR_RS33180 SM00448 cheY-homologous receiver domain AFR_RS33205 SM00267 diguanylate cyclase AFR_RS33245 SM00422 helix_turn_helix, mercury resistance AFR_RS33255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS33260 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS33265 SM00354 helix_turn _helix lactose operon repressor AFR_RS33285 SM00642 Alpha-amylase domain AFR_RS33290 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS33290 SM00710 Parallel beta-helix repeats AFR_RS33295 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS33295 SM00710 Parallel beta-helix repeats AFR_RS33300 SM00421 helix_turn_helix, Lux Regulon AFR_RS33300 SM00448 cheY-homologous receiver domain AFR_RS33315 SM00947 Carbonic anhydrase AFR_RS33370 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_RS33370 SM00387 Histidine kinase-like ATPases AFR_RS33375 SM00448 cheY-homologous receiver domain AFR_RS33395 SM00357 Cold shock protein domain AFR_RS33400 SM00458 Ricin-type beta-trefoil AFR_RS33405 SM00637 AFR_RS33405 AFR_RS33450 SM00382 ATPases associated with a variety of cellular activities AFR_RS33475 SM00829 Enoylreductase AFR_RS33480 SM00387 Histidine kinase-like ATPases AFR_RS33485 SM00421 helix_turn_helix, Lux Regulon AFR_RS33485 SM00448 cheY-homologous receiver domain AFR_RS33510 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_RS33535 SM00382 ATPases associated with a variety of cellular activities AFR_RS33545 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS33565 SM00028 Tetratricopeptide repeats AFR_RS33590 SM00382 ATPases associated with a variety of cellular activities AFR_RS33595 SM00382 ATPases associated with a variety of cellular activities AFR_RS33600 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AFR_RS33615 SM00098 Alkaline phosphatase homologues AFR_RS33650 SM00421 helix_turn_helix, Lux Regulon AFR_RS33660 SM00421 helix_turn_helix, Lux Regulon AFR_RS33660 SM00448 cheY-homologous receiver domain AFR_RS33665 SM00387 Histidine kinase-like ATPases AFR_RS33675 SM00382 ATPases associated with a variety of cellular activities AFR_RS33685 SM00382 ATPases associated with a variety of cellular activities AFR_RS33705 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS33745 SM00421 helix_turn_helix, Lux Regulon AFR_RS33765 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS33780 SM00331 Sigma factor PP2C-like phosphatases AFR_RS33780 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_RS33780 SM00422 helix_turn_helix, mercury resistance AFR_RS33790 SM00354 helix_turn _helix lactose operon repressor AFR_RS33815 SM00421 helix_turn_helix, Lux Regulon AFR_RS33815 SM00448 cheY-homologous receiver domain AFR_RS33840 SM00382 ATPases associated with a variety of cellular activities AFR_RS33850 SM00052 Putative diguanylate phosphodiesterase AFR_RS33850 SM00091 PAS domain AFR_RS33850 SM00267 diguanylate cyclase AFR_RS33900 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS33955 SM00354 helix_turn _helix lactose operon repressor AFR_RS33990 SM00422 helix_turn_helix, mercury resistance AFR_RS34010 SM01133 AFR_RS34010 AFR_RS34025 SM00382 ATPases associated with a variety of cellular activities AFR_RS34065 SM00606 Cellulose Binding Domain Type IV AFR_RS34095 SM00421 helix_turn_helix, Lux Regulon AFR_RS34095 SM00448 cheY-homologous receiver domain AFR_RS34165 SM00900 AFR_RS34165 AFR_RS34215 SM00421 helix_turn_helix, Lux Regulon AFR_RS34215 SM00448 cheY-homologous receiver domain AFR_RS34235 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFR_RS34285 SM00448 cheY-homologous receiver domain AFR_RS34285 SM00862 Transcriptional regulatory protein, C terminal AFR_RS34290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS34290 SM00387 Histidine kinase-like ATPases AFR_RS34290 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS34310 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_RS34315 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS34335 SM00421 helix_turn_helix, Lux Regulon AFR_RS34350 SM00382 ATPases associated with a variety of cellular activities AFR_RS34360 SM00387 Histidine kinase-like ATPases AFR_RS34365 SM00421 helix_turn_helix, Lux Regulon AFR_RS34365 SM00448 cheY-homologous receiver domain AFR_RS34385 SM00421 helix_turn_helix, Lux Regulon AFR_RS34385 SM00448 cheY-homologous receiver domain AFR_RS34425 SM00878 Biotin carboxylase C-terminal domain AFR_RS34445 SM00191 Integrin alpha (beta-propellor repeats). AFR_RS34470 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS34510 SM00606 Cellulose Binding Domain Type IV AFR_RS34515 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS34515 SM00895 AFR_RS34515 AFR_RS34570 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS34580 SM00422 helix_turn_helix, mercury resistance AFR_RS34595 SM00947 Carbonic anhydrase AFR_RS34600 SM00028 Tetratricopeptide repeats AFR_RS34600 SM00267 diguanylate cyclase AFR_RS34615 SM00382 ATPases associated with a variety of cellular activities AFR_RS34620 SM00382 ATPases associated with a variety of cellular activities AFR_RS34625 SM00422 helix_turn_helix, mercury resistance AFR_RS34665 SM00860 SMI1 / KNR4 family AFR_RS34710 SM00421 helix_turn_helix, Lux Regulon AFR_RS34725 SM00091 PAS domain AFR_RS34725 SM00267 diguanylate cyclase AFR_RS34740 SM00382 ATPases associated with a variety of cellular activities AFR_RS34790 SM00421 helix_turn_helix, Lux Regulon AFR_RS34790 SM00448 cheY-homologous receiver domain AFR_RS34815 SM00849 Metallo-beta-lactamase superfamily AFR_RS34835 SM00014 Acid phosphatase homologues AFR_RS34840 SM00421 helix_turn_helix, Lux Regulon AFR_RS34840 SM00448 cheY-homologous receiver domain AFR_RS34915 SM00354 helix_turn _helix lactose operon repressor AFR_RS34925 SM00354 helix_turn _helix lactose operon repressor AFR_RS34930 SM00829 Enoylreductase AFR_RS34945 SM00637 AFR_RS34945 AFR_RS34965 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_RS34970 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_RS34990 SM00052 Putative diguanylate phosphodiesterase AFR_RS34990 SM00091 PAS domain AFR_RS34990 SM00267 diguanylate cyclase AFR_RS35015 SM00796 Allophanate hydrolase subunit 1 AFR_RS35020 SM00797 Allophanate hydrolase subunit 2 AFR_RS35025 SM00797 Allophanate hydrolase subunit 2 AFR_RS35030 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS35030 SM00895 AFR_RS35030 AFR_RS35085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS35115 SM00354 helix_turn _helix lactose operon repressor AFR_RS35135 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS35135 SM00876 Biotin and Thiamin Synthesis associated domain AFR_RS35155 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS35155 SM01091 Transporter associated domain AFR_RS35170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS35205 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_RS35260 SM00382 ATPases associated with a variety of cellular activities AFR_RS35270 SM00421 helix_turn_helix, Lux Regulon AFR_RS35270 SM00448 cheY-homologous receiver domain AFR_RS35280 SM00829 Enoylreductase AFR_RS35370 SM00341 Helicase and RNase D C-terminal AFR_RS35370 SM00474 3'-5' exonuclease AFR_RS35405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS35405 SM00387 Histidine kinase-like ATPases AFR_RS35405 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS35410 SM00448 cheY-homologous receiver domain AFR_RS35410 SM00862 Transcriptional regulatory protein, C terminal AFR_RS35430 SM00861 Transketolase, pyrimidine binding domain AFR_RS35515 SM00382 ATPases associated with a variety of cellular activities AFR_RS35515 SM00487 DEAD-like helicases superfamily AFR_RS35555 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS35555 SM00866 AFR_RS35555 AFR_RS35560 SM01133 AFR_RS35560 AFR_RS35605 SM00881 CoA binding domain AFR_RS35615 SM00529 Helix-turn-helix diphteria tox regulatory element AFR_RS35615 SM00899 AFR_RS35615 AFR_RS35655 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS35695 SM00257 Lysin motif AFR_RS35720 SM00919 Malic enzyme, NAD binding domain AFR_RS35720 SM01274 AFR_RS35720 AFR_RS35770 SM00267 diguanylate cyclase AFR_RS35775 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS35785 SM00382 ATPases associated with a variety of cellular activities AFR_RS35790 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS35810 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS35815 SM00322 K homology RNA-binding domain AFR_RS35815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_RS35835 SM00382 ATPases associated with a variety of cellular activities AFR_RS35850 SM00986 Uracil DNA glycosylase superfamily AFR_RS35850 SM00987 UreE urease accessory protein, C-terminal domain AFR_RS35865 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS35890 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_RS35895 SM01091 Transporter associated domain AFR_RS35905 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS35920 SM00382 ATPases associated with a variety of cellular activities AFR_RS35920 SM00487 DEAD-like helicases superfamily AFR_RS35920 SM00490 helicase superfamily c-terminal domain AFR_RS35960 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_RS35960 SM01232 AFR_RS35960 AFR_RS35975 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS35990 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS36000 SM00382 ATPases associated with a variety of cellular activities AFR_RS36000 SM00843 AFR_RS36000 AFR_RS36020 SM00849 Metallo-beta-lactamase superfamily AFR_RS36025 SM01130 AFR_RS36025 AFR_RS36065 SM00354 helix_turn _helix lactose operon repressor AFR_RS36090 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_RS36090 SM00322 K homology RNA-binding domain AFR_RS36095 SM01387 AFR_RS36095 AFR_RS36100 SM00904 Riboflavin kinase AFR_RS36105 SM00387 Histidine kinase-like ATPases AFR_RS36105 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS36105 SM00448 cheY-homologous receiver domain AFR_RS36125 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS36165 SM00322 K homology RNA-binding domain AFR_RS36205 SM00331 Sigma factor PP2C-like phosphatases AFR_RS36205 SM00387 Histidine kinase-like ATPases AFR_RS36205 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS36205 SM00448 cheY-homologous receiver domain AFR_RS36235 SM01230 AFR_RS36235 AFR_RS36245 SM00422 helix_turn_helix, mercury resistance AFR_RS36270 SM00387 Histidine kinase-like ATPases AFR_RS36275 SM00421 helix_turn_helix, Lux Regulon AFR_RS36275 SM00448 cheY-homologous receiver domain AFR_RS36280 SM00382 ATPases associated with a variety of cellular activities AFR_RS36300 SM00382 ATPases associated with a variety of cellular activities AFR_RS36410 SM00382 ATPases associated with a variety of cellular activities AFR_RS36430 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS36520 SM00946 Prolyl-tRNA synthetase, C-terminal AFR_RS36545 SM00382 ATPases associated with a variety of cellular activities AFR_RS36545 SM00962 SRP54-type protein, GTPase domain AFR_RS36545 SM00963 SRP54-type protein, helical bundle domain AFR_RS36560 SM00984 UDP binding domain AFR_RS36595 SM00938 Nitrogen regulatory protein P-II AFR_RS36610 SM00382 ATPases associated with a variety of cellular activities AFR_RS36610 SM00962 SRP54-type protein, GTPase domain AFR_RS36610 SM00963 SRP54-type protein, helical bundle domain AFR_RS36660 SM00968 SMC proteins Flexible Hinge Domain AFR_RS36690 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_RS36690 SM01232 AFR_RS36690 AFR_RS36700 SM00358 Double-stranded RNA binding motif AFR_RS36700 SM00535 Ribonuclease III family AFR_RS36755 SM00487 DEAD-like helicases superfamily AFR_RS36755 SM00490 helicase superfamily c-terminal domain AFR_RS36760 SM01120 AFR_RS36760 AFR_RS36760 SM01121 AFR_RS36760 AFR_RS36805 SM00382 ATPases associated with a variety of cellular activities AFR_RS36810 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS36830 SM00563 Phosphate acyltransferases AFR_RS36860 SM00411 bacterial (prokaryotic) histone like domain AFR_RS36875 SM00346 helix_turn_helix isocitrate lyase regulation AFR_RS36880 SM00849 Metallo-beta-lactamase superfamily AFR_RS36910 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS36920 SM00382 ATPases associated with a variety of cellular activities AFR_RS36930 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS36955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS36955 SM00387 Histidine kinase-like ATPases AFR_RS36955 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS36960 SM00448 cheY-homologous receiver domain AFR_RS36960 SM00862 Transcriptional regulatory protein, C terminal AFR_RS36970 SM00327 von Willebrand factor (vWF) type A domain AFR_RS37020 SM00917 LeuA allosteric (dimerisation) domain AFR_RS37045 SM01329 AFR_RS37045 AFR_RS37085 SM00052 Putative diguanylate phosphodiesterase AFR_RS37085 SM00267 diguanylate cyclase AFR_RS37115 SM00354 helix_turn _helix lactose operon repressor AFR_RS37125 SM00052 Putative diguanylate phosphodiesterase AFR_RS37125 SM00091 PAS domain AFR_RS37125 SM00267 diguanylate cyclase AFR_RS37160 SM00845 GatB domain AFR_RS37175 SM00052 Putative diguanylate phosphodiesterase AFR_RS37175 SM00267 diguanylate cyclase AFR_RS37185 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_RS37185 SM00292 breast cancer carboxy-terminal domain AFR_RS37185 SM00532 Ligase N family AFR_RS37215 SM00893 Electron transfer flavoprotein domain AFR_RS37220 SM00893 Electron transfer flavoprotein domain AFR_RS37280 SM00382 ATPases associated with a variety of cellular activities AFR_RS37380 SM00267 diguanylate cyclase AFR_RS37395 SM00382 ATPases associated with a variety of cellular activities AFR_RS37440 SM00382 ATPases associated with a variety of cellular activities AFR_RS37475 SM00382 ATPases associated with a variety of cellular activities AFR_RS37525 SM00382 ATPases associated with a variety of cellular activities AFR_RS37585 SM00226 Low molecular weight phosphatase family AFR_RS37600 SM00267 diguanylate cyclase AFR_RS37610 SM00937 AFR_RS37610 AFR_RS37640 SM00357 Cold shock protein domain AFR_RS37640 SM00382 ATPases associated with a variety of cellular activities AFR_RS37640 SM00959 Rho termination factor, N-terminal domain AFR_RS37665 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS37685 SM00836 DALR anticodon binding domain AFR_RS37685 SM01016 Arginyl tRNA synthetase N terminal dom AFR_RS37710 SM00829 Enoylreductase AFR_RS37735 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS37735 SM00710 Parallel beta-helix repeats AFR_RS37745 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS37785 SM00448 cheY-homologous receiver domain AFR_RS37785 SM00862 Transcriptional regulatory protein, C terminal AFR_RS37790 SM00387 Histidine kinase-like ATPases AFR_RS37790 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS37800 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS37855 SM00822 AFR_RS37855 AFR_RS37885 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS37915 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AFR_RS37980 SM00822 AFR_RS37980 AFR_RS37985 SM00642 Alpha-amylase domain AFR_RS37990 SM00752 Horizontally Transferred TransMembrane Domain AFR_RS38015 SM00495 Chitin-binding domain type 3 AFR_RS38020 SM00495 Chitin-binding domain type 3 AFR_RS38020 SM00636 AFR_RS38020 AFR_RS38050 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_RS38050 SM01232 AFR_RS38050 AFR_RS38095 SM00563 Phosphate acyltransferases AFR_RS38105 SM00495 Chitin-binding domain type 3 AFR_RS38105 SM00636 AFR_RS38105 AFR_RS38110 SM00382 ATPases associated with a variety of cellular activities AFR_RS38135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS38135 SM00387 Histidine kinase-like ATPases AFR_RS38135 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS38140 SM00448 cheY-homologous receiver domain AFR_RS38140 SM00862 Transcriptional regulatory protein, C terminal AFR_RS38145 SM00563 Phosphate acyltransferases AFR_RS38155 SM00382 ATPases associated with a variety of cellular activities AFR_RS38165 SM00861 Transketolase, pyrimidine binding domain AFR_RS38175 SM00382 ATPases associated with a variety of cellular activities AFR_RS38180 SM00382 ATPases associated with a variety of cellular activities AFR_RS38185 SM00382 ATPases associated with a variety of cellular activities AFR_RS38210 SM00829 Enoylreductase AFR_RS38215 SM00919 Malic enzyme, NAD binding domain AFR_RS38215 SM01274 AFR_RS38215 AFR_RS38240 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS38240 SM00895 AFR_RS38240 AFR_RS38250 SM00046 Diacylglycerol kinase catalytic domain (presumed) AFR_RS38285 SM00387 Histidine kinase-like ATPases AFR_RS38360 SM00421 helix_turn_helix, Lux Regulon AFR_RS38360 SM00448 cheY-homologous receiver domain AFR_RS38365 SM00387 Histidine kinase-like ATPases AFR_RS38375 SM00495 Chitin-binding domain type 3 AFR_RS38380 SM00458 Ricin-type beta-trefoil AFR_RS38550 SM00341 Helicase and RNase D C-terminal AFR_RS38565 SM00421 helix_turn_helix, Lux Regulon AFR_RS38565 SM00448 cheY-homologous receiver domain AFR_RS38635 SM00062 Bacterial periplasmic substrate-binding proteins AFR_RS38640 SM00382 ATPases associated with a variety of cellular activities AFR_RS38660 SM00563 Phosphate acyltransferases AFR_RS38665 SM00357 Cold shock protein domain AFR_RS38685 SM00354 helix_turn _helix lactose operon repressor AFR_RS38755 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS38765 SM00422 helix_turn_helix, mercury resistance AFR_RS38765 SM00480 DNA polymerase III beta subunit AFR_RS38785 SM00822 AFR_RS38785 AFR_RS38790 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS38845 SM00478 endonuclease III AFR_RS39060 SM00382 ATPases associated with a variety of cellular activities AFR_RS39065 SM00382 ATPases associated with a variety of cellular activities AFR_RS39120 SM00421 helix_turn_helix, Lux Regulon AFR_RS39170 SM00829 Enoylreductase AFR_RS39215 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS39215 SM00458 Ricin-type beta-trefoil AFR_RS39215 SM00606 Cellulose Binding Domain Type IV AFR_RS39220 SM00458 Ricin-type beta-trefoil AFR_RS39255 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS39270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS39345 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS39345 SM00478 endonuclease III AFR_RS39345 SM01009 AlkA N-terminal domain AFR_RS39360 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_RS39365 SM00560 LamG-like jellyroll fold domain AFR_RS39435 SM00020 Trypsin-like serine protease AFR_RS39445 SM00670 Large family of predicted nucleotide-binding domains AFR_RS39560 SM00382 ATPases associated with a variety of cellular activities AFR_RS39570 SM00878 Biotin carboxylase C-terminal domain AFR_RS39585 SM00460 Transglutaminase/protease-like homologues AFR_RS39630 SM00849 Metallo-beta-lactamase superfamily AFR_RS39650 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS39685 SM01133 AFR_RS39685 AFR_RS39725 SM00960 Roadblock/LC7 domain AFR_RS39730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS39730 SM00387 Histidine kinase-like ATPases AFR_RS39750 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AFR_RS39770 SM00382 ATPases associated with a variety of cellular activities AFR_RS39830 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS39865 SM00813 Alpha-L-arabinofuranosidase C-terminus AFR_RS39870 SM00354 helix_turn _helix lactose operon repressor AFR_RS39905 SM01400 AFR_RS39905 AFR_RS39955 SM00822 AFR_RS39955 AFR_RS39955 SM00825 Beta-ketoacyl synthase AFR_RS39955 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFR_RS39975 SM00382 ATPases associated with a variety of cellular activities AFR_RS39990 SM00650 Ribosomal RNA adenine dimethylases AFR_RS40050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS40050 SM00387 Histidine kinase-like ATPases AFR_RS40095 SM00852 Probable molybdopterin binding domain AFR_RS40105 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS40105 SM00267 diguanylate cyclase AFR_RS40105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS40115 SM00834 Putative regulatory protein AFR_RS40165 SM00481 DNA polymerase alpha chain like domain AFR_RS40190 SM00305 Hint (Hedgehog/Intein) domain C-terminal region AFR_RS40190 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_RS40195 SM00881 CoA binding domain AFR_RS40240 SM00924 MgtE intracellular N domain AFR_RS40260 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFR_RS40285 SM00020 Trypsin-like serine protease AFR_RS40335 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AFR_RS40360 SM01004 Delta-aminolevulinic acid dehydratase AFR_RS40380 SM00881 CoA binding domain AFR_RS40410 SM00563 Phosphate acyltransferases AFR_RS40445 SM00637 AFR_RS40445 AFR_RS40445 SM00710 Parallel beta-helix repeats AFR_RS40465 SM00448 cheY-homologous receiver domain AFR_RS40465 SM00862 Transcriptional regulatory protein, C terminal AFR_RS40470 SM00387 Histidine kinase-like ATPases AFR_RS40470 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS40480 SM00855 Phosphoglycerate mutase family AFR_RS40490 SM00260 Two component signalling adaptor domain AFR_RS40495 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_RS40495 SM00091 PAS domain AFR_RS40495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS40530 SM00448 cheY-homologous receiver domain AFR_RS40545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_RS40545 SM00387 Histidine kinase-like ATPases AFR_RS40545 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS40560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS40560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS40645 SM00382 ATPases associated with a variety of cellular activities AFR_RS40760 SM00448 cheY-homologous receiver domain AFR_RS40770 SM00448 cheY-homologous receiver domain AFR_RS40775 SM00138 Methyltransferase, chemotaxis proteins AFR_RS40780 SM00448 cheY-homologous receiver domain AFR_RS40790 SM00260 Two component signalling adaptor domain AFR_RS40795 SM00073 Histidine Phosphotransfer domain AFR_RS40795 SM00260 Two component signalling adaptor domain AFR_RS40795 SM00387 Histidine kinase-like ATPases AFR_RS40795 SM01231 AFR_RS40795 AFR_RS40800 SM00448 cheY-homologous receiver domain AFR_RS40800 SM00862 Transcriptional regulatory protein, C terminal AFR_RS40805 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS40830 SM00354 helix_turn _helix lactose operon repressor AFR_RS40835 SM00506 Appr-1"-p processing enzyme AFR_RS40870 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS40930 SM00450 Rhodanese Homology Domain AFR_RS40945 SM00862 Transcriptional regulatory protein, C terminal AFR_RS40980 SM00382 ATPases associated with a variety of cellular activities AFR_RS41020 SM00487 DEAD-like helicases superfamily AFR_RS41020 SM00491 AFR_RS41020 AFR_RS41030 SM00883 Chaperonin 10 Kd subunit AFR_RS41110 SM00382 ATPases associated with a variety of cellular activities AFR_RS41125 SM00382 ATPases associated with a variety of cellular activities AFR_RS41125 SM01073 Cell division protein 48 (CDC48) N-terminal domain AFR_RS41135 SM00382 ATPases associated with a variety of cellular activities AFR_RS41135 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_RS41175 SM00495 Chitin-binding domain type 3 AFR_RS41180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS41180 SM00387 Histidine kinase-like ATPases AFR_RS41180 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS41185 SM00448 cheY-homologous receiver domain AFR_RS41185 SM00862 Transcriptional regulatory protein, C terminal AFR_RS41215 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_RS41215 SM01134 AFR_RS41215 AFR_RS41290 SM00382 ATPases associated with a variety of cellular activities AFR_RS41300 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFR_RS41305 SM00840 AFR_RS41305 AFR_RS41350 SM00344 helix_turn_helix ASNC type AFR_RS41380 SM00382 ATPases associated with a variety of cellular activities AFR_RS41385 SM00387 Histidine kinase-like ATPases AFR_RS41390 SM00421 helix_turn_helix, Lux Regulon AFR_RS41390 SM00448 cheY-homologous receiver domain AFR_RS41410 SM00564 beta-propeller repeat AFR_RS41470 SM00028 Tetratricopeptide repeats AFR_RS41490 SM01058 CarD-like/TRCF domain AFR_RS41530 SM00382 ATPases associated with a variety of cellular activities AFR_RS41555 SM00478 endonuclease III AFR_RS41555 SM00525 AFR_RS41555 AFR_RS41565 SM00382 ATPases associated with a variety of cellular activities AFR_RS41565 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_RS41645 SM00382 ATPases associated with a variety of cellular activities AFR_RS41675 SM00905 Dihydroneopterin aldolase AFR_RS41750 SM00382 ATPases associated with a variety of cellular activities AFR_RS41785 SM00382 ATPases associated with a variety of cellular activities AFR_RS41810 SM00478 endonuclease III AFR_RS41810 SM00525 AFR_RS41810 AFR_RS41815 SM00854 Bacterial capsule synthesis protein PGA_cap AFR_RS41820 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_RS41820 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_RS41830 SM00878 Biotin carboxylase C-terminal domain AFR_RS41835 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS41840 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AFR_RS41845 SM00849 Metallo-beta-lactamase superfamily AFR_RS41910 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS41920 SM00897 FIST N domain AFR_RS41920 SM01204 AFR_RS41920 AFR_RS41925 SM00052 Putative diguanylate phosphodiesterase AFR_RS41925 SM00267 diguanylate cyclase AFR_RS41935 SM00495 Chitin-binding domain type 3 AFR_RS41940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS41950 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_RS41965 SM00917 LeuA allosteric (dimerisation) domain AFR_RS41985 SM00382 ATPases associated with a variety of cellular activities AFR_RS41990 SM00382 ATPases associated with a variety of cellular activities AFR_RS42010 SM00493 AFR_RS42010 AFR_RS42020 SM00382 ATPases associated with a variety of cellular activities AFR_RS42050 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_RS42145 SM00481 DNA polymerase alpha chain like domain AFR_RS42160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS42160 SM00387 Histidine kinase-like ATPases AFR_RS42165 SM00960 Roadblock/LC7 domain AFR_RS42230 SM00637 AFR_RS42230 AFR_RS42240 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_RS42265 SM00267 diguanylate cyclase AFR_RS42290 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS42330 SM00487 DEAD-like helicases superfamily AFR_RS42330 SM00490 helicase superfamily c-terminal domain AFR_RS42340 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_RS42365 SM00382 ATPases associated with a variety of cellular activities AFR_RS42370 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_RS42375 SM00422 helix_turn_helix, mercury resistance AFR_RS42390 SM00028 Tetratricopeptide repeats AFR_RS42390 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS42420 SM00530 Helix-turn-helix XRE-family like proteins AFR_RS42445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS42445 SM00387 Histidine kinase-like ATPases AFR_RS42445 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS42495 SM00422 helix_turn_helix, mercury resistance AFR_RS42525 SM00458 Ricin-type beta-trefoil AFR_RS42530 SM00458 Ricin-type beta-trefoil AFR_RS42535 SM00829 Enoylreductase AFR_RS42555 SM00422 helix_turn_helix, mercury resistance AFR_RS42565 SM00861 Transketolase, pyrimidine binding domain AFR_RS42645 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_RS42645 SM01232 AFR_RS42645 AFR_RS42655 SM00387 Histidine kinase-like ATPases AFR_RS42660 SM00448 cheY-homologous receiver domain AFR_RS42660 SM00850 LytTr DNA-binding domain AFR_RS42665 SM00448 cheY-homologous receiver domain AFR_RS42665 SM00862 Transcriptional regulatory protein, C terminal AFR_RS42670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS42670 SM00387 Histidine kinase-like ATPases AFR_RS42670 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS42695 SM00382 ATPases associated with a variety of cellular activities AFR_RS42710 SM00903 Flavin reductase like domain AFR_RS42740 SM00450 Rhodanese Homology Domain AFR_RS42750 SM00091 PAS domain AFR_RS42750 SM00387 Histidine kinase-like ATPases AFR_RS42750 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS42840 SM00344 helix_turn_helix ASNC type AFR_RS42890 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_RS42950 SM00852 Probable molybdopterin binding domain AFR_RS42955 SM00852 Probable molybdopterin binding domain AFR_RS42965 SM00052 Putative diguanylate phosphodiesterase AFR_RS42965 SM00267 diguanylate cyclase AFR_RS43035 SM00382 ATPases associated with a variety of cellular activities AFR_RS43070 SM00518 AP endonuclease family 2 AFR_RS43130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_RS43145 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS43170 SM00646 AFR_RS43170 AFR_RS43195 SM00470 ParB-like nuclease domain AFR_RS43210 SM00393 Putative single-stranded nucleic acids-binding domain AFR_RS43250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS43285 SM00052 Putative diguanylate phosphodiesterase AFR_RS43285 SM00091 PAS domain AFR_RS43285 SM00267 diguanylate cyclase AFR_RS43315 SM00052 Putative diguanylate phosphodiesterase AFR_RS43315 SM00267 diguanylate cyclase AFR_RS43345 SM00421 helix_turn_helix, Lux Regulon AFR_RS43380 SM00421 helix_turn_helix, Lux Regulon AFR_RS43400 SM00060 Fibronectin type 3 domain AFR_RS43425 SM00387 Histidine kinase-like ATPases AFR_RS43455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_RS43455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS43540 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS43540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_RS43540 SM00387 Histidine kinase-like ATPases AFR_RS43540 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS43545 SM00387 Histidine kinase-like ATPases AFR_RS43545 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS43560 SM00637 AFR_RS43560 AFR_RS43600 SM00052 Putative diguanylate phosphodiesterase AFR_RS43605 SM00052 Putative diguanylate phosphodiesterase AFR_RS43605 SM00267 diguanylate cyclase AFR_RS43610 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS43610 SM00871 Bacterial transcription activator, effector binding domain AFR_RS43615 SM01012 AFR_RS43615 AFR_RS43630 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS43650 SM00342 helix_turn_helix, arabinose operon control protein AFR_RS43665 SM00382 ATPases associated with a variety of cellular activities AFR_RS43675 SM00108 Bulb-type mannose-specific lectin AFR_RS43680 SM00108 Bulb-type mannose-specific lectin AFR_RS43690 SM00248 ankyrin repeats AFR_RS43695 SM00387 Histidine kinase-like ATPases AFR_RS43695 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS43695 SM01079 AFR_RS43695 AFR_RS43745 SM00052 Putative diguanylate phosphodiesterase AFR_RS43745 SM00267 diguanylate cyclase AFR_RS43750 SM00052 Putative diguanylate phosphodiesterase AFR_RS43750 SM00267 diguanylate cyclase AFR_RS43765 SM00331 Sigma factor PP2C-like phosphatases AFR_RS43775 SM00421 helix_turn_helix, Lux Regulon AFR_RS43780 SM00028 Tetratricopeptide repeats AFR_RS43785 SM00091 PAS domain AFR_RS43785 SM00267 diguanylate cyclase AFR_RS43790 SM00458 Ricin-type beta-trefoil AFR_RS43810 SM00637 AFR_RS43810 AFR_RS43815 SM00052 Putative diguanylate phosphodiesterase AFR_RS43815 SM00267 diguanylate cyclase AFR_RS43835 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS43835 SM00421 helix_turn_helix, Lux Regulon AFR_RS43865 SM00387 Histidine kinase-like ATPases AFR_RS43865 SM00388 His Kinase A (phosphoacceptor) domain AFR_RS43865 SM01079 AFR_RS43865 AFR_RS43875 SM00248 ankyrin repeats AFR_RS43890 SM00267 diguanylate cyclase AFR_RS43940 SM00052 Putative diguanylate phosphodiesterase AFR_RS43940 SM00091 PAS domain AFR_RS43940 SM00267 diguanylate cyclase AFR_RS43990 SM00052 Putative diguanylate phosphodiesterase AFR_RS43990 SM00267 diguanylate cyclase AFR_RS44000 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS44005 SM00060 Fibronectin type 3 domain AFR_RS44020 SM00060 Fibronectin type 3 domain AFR_RS44040 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS44070 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_RS44080 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS44100 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_RS44115 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_RS44165 SM00429 ig-like, plexins, transcription factors AFR_RS44165 SM00645 Papain family cysteine protease AFR_RS44170 SM00267 diguanylate cyclase AFR_RS44180 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS44190 SM00052 Putative diguanylate phosphodiesterase AFR_RS44190 SM00267 diguanylate cyclase AFR_RS44235 SM00052 Putative diguanylate phosphodiesterase AFR_RS44235 SM00267 diguanylate cyclase AFR_RS44260 SM00429 ig-like, plexins, transcription factors AFR_RS44260 SM00645 Papain family cysteine protease AFR_RS44265 SM00052 Putative diguanylate phosphodiesterase AFR_RS44265 SM00267 diguanylate cyclase AFR_RS44270 SM00052 Putative diguanylate phosphodiesterase AFR_RS44270 SM00267 diguanylate cyclase AFR_RS44270 SM01079 AFR_RS44270 AFR_RS44280 SM00862 Transcriptional regulatory protein, C terminal AFR_RS44280 SM01043 Bacterial transcriptional activator domain AFR_RS44360 SM00267 diguanylate cyclase AFR_RS44370 SM00421 helix_turn_helix, Lux Regulon AFR_RS44370 SM00448 cheY-homologous receiver domain AFR_RS44380 SM01208 AFR_RS44380 AFR_RS44390 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_RS44395 SM00825 Beta-ketoacyl synthase AFR_RS44395 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes.