AMIR_RS00100	PWY-5958	acridone alkaloid biosynthesis
AMIR_RS00100	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMIR_RS00100	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMIR_RS00160	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS00245	PWY-4041	&gamma;-glutamyl cycle
AMIR_RS00245	PWY-5826	hypoglycin biosynthesis
AMIR_RS00415	PWY-4981	L-proline biosynthesis II (from arginine)
AMIR_RS00500	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AMIR_RS00600	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AMIR_RS00650	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMIR_RS00650	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMIR_RS00650	PWY-7622	UDP-galactofuranose biosynthesis
AMIR_RS00775	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AMIR_RS00775	PWY-7118	chitin degradation to ethanol
AMIR_RS00860	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AMIR_RS01095	PWY-6871	3-methylbutanol biosynthesis
AMIR_RS01115	PWY-2941	L-lysine biosynthesis II
AMIR_RS01115	PWY-2942	L-lysine biosynthesis III
AMIR_RS01115	PWY-5097	L-lysine biosynthesis VI
AMIR_RS01115	PWY-6559	spermidine biosynthesis II
AMIR_RS01115	PWY-6562	norspermidine biosynthesis
AMIR_RS01115	PWY-7153	grixazone biosynthesis
AMIR_RS01120	PWY-2941	L-lysine biosynthesis II
AMIR_RS01120	PWY-2942	L-lysine biosynthesis III
AMIR_RS01120	PWY-5097	L-lysine biosynthesis VI
AMIR_RS01120	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS01120	PWY-6559	spermidine biosynthesis II
AMIR_RS01120	PWY-6562	norspermidine biosynthesis
AMIR_RS01120	PWY-7153	grixazone biosynthesis
AMIR_RS01120	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS01125	PWY-4261	glycerol degradation I
AMIR_RS01340	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AMIR_RS01340	PWY-7118	chitin degradation to ethanol
AMIR_RS01355	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AMIR_RS01355	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AMIR_RS01490	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS01490	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS01490	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS01490	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMIR_RS01490	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMIR_RS01490	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMIR_RS01570	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMIR_RS01570	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMIR_RS01585	PWY-6599	guanine and guanosine salvage II
AMIR_RS01585	PWY-6609	adenine and adenosine salvage III
AMIR_RS01585	PWY-6610	adenine and adenosine salvage IV
AMIR_RS01585	PWY-6620	guanine and guanosine salvage
AMIR_RS01600	PWY-5663	tetrahydrobiopterin biosynthesis I
AMIR_RS01600	PWY-5664	tetrahydrobiopterin biosynthesis II
AMIR_RS01600	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMIR_RS01600	PWY-6703	preQ<sub>0</sub> biosynthesis
AMIR_RS01600	PWY-6983	tetrahydrobiopterin biosynthesis III
AMIR_RS01600	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AMIR_RS01605	PWY-6614	tetrahydrofolate biosynthesis
AMIR_RS01610	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMIR_RS01610	PWY-6148	tetrahydromethanopterin biosynthesis
AMIR_RS01610	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMIR_RS01610	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMIR_RS01615	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AMIR_RS01615	PWY-6148	tetrahydromethanopterin biosynthesis
AMIR_RS01615	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AMIR_RS01615	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMIR_RS01660	PWY-5155	&beta;-alanine biosynthesis III
AMIR_RS01665	PWY-3961	phosphopantothenate biosynthesis II
AMIR_RS01750	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMIR_RS01750	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS01750	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMIR_RS01750	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMIR_RS01840	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS01845	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS01995	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS01995	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS01995	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS01995	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS01995	PWY-5723	Rubisco shunt
AMIR_RS01995	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS01995	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS01995	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS01995	PWY-7003	glycerol degradation to butanol
AMIR_RS01995	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS01995	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS02060	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMIR_RS02060	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMIR_RS02060	PWY-6897	thiamin salvage II
AMIR_RS02060	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMIR_RS02060	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMIR_RS02060	PWY-7356	thiamin salvage IV (yeast)
AMIR_RS02060	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMIR_RS02075	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS02075	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS02140	PWY-6910	hydroxymethylpyrimidine salvage
AMIR_RS02140	PWY-7356	thiamin salvage IV (yeast)
AMIR_RS02140	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AMIR_RS02145	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AMIR_RS02195	PWY-5669	phosphatidylethanolamine biosynthesis I
AMIR_RS02200	PWY-5669	phosphatidylethanolamine biosynthesis I
AMIR_RS02210	PWY-6823	molybdenum cofactor biosynthesis
AMIR_RS02265	PWY-6902	chitin degradation II
AMIR_RS02280	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS02280	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS02280	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS02280	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS02280	PWY-5723	Rubisco shunt
AMIR_RS02280	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AMIR_RS02280	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS02280	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS02280	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS02280	PWY-7003	glycerol degradation to butanol
AMIR_RS02280	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS02280	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS02360	PWY-6823	molybdenum cofactor biosynthesis
AMIR_RS02375	PWY-6823	molybdenum cofactor biosynthesis
AMIR_RS02480	PWY-6854	ethylene biosynthesis III (microbes)
AMIR_RS02495	PWY-6840	homoglutathione biosynthesis
AMIR_RS02495	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS02525	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS02525	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS02550	PWY-5704	urea degradation II
AMIR_RS02555	PWY-5704	urea degradation II
AMIR_RS02560	PWY-5704	urea degradation II
AMIR_RS02975	PWY-6823	molybdenum cofactor biosynthesis
AMIR_RS02975	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS02975	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS02975	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMIR_RS03025	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AMIR_RS03025	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AMIR_RS03060	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMIR_RS03060	PWY-5109	2-methylbutanoate biosynthesis
AMIR_RS03060	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMIR_RS03060	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMIR_RS03060	PWY-5177	glutaryl-CoA degradation
AMIR_RS03060	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS03060	PWY-6435	4-hydroxybenzoate biosynthesis V
AMIR_RS03060	PWY-6583	pyruvate fermentation to butanol I
AMIR_RS03060	PWY-6863	pyruvate fermentation to hexanol
AMIR_RS03060	PWY-6883	pyruvate fermentation to butanol II
AMIR_RS03060	PWY-6944	androstenedione degradation
AMIR_RS03060	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS03060	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS03060	PWY-7007	methyl ketone biosynthesis
AMIR_RS03060	PWY-7046	4-coumarate degradation (anaerobic)
AMIR_RS03060	PWY-7094	fatty acid salvage
AMIR_RS03060	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMIR_RS03060	PWY-735	jasmonic acid biosynthesis
AMIR_RS03060	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMIR_RS03060	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMIR_RS03060	PWY-7726	AMIR_RS03060
AMIR_RS03095	PWY-6807	xyloglucan degradation II (exoglucanase)
AMIR_RS03105	PWY-6317	galactose degradation I (Leloir pathway)
AMIR_RS03105	PWY-6527	stachyose degradation
AMIR_RS03150	PWY-6823	molybdenum cofactor biosynthesis
AMIR_RS03190	PWY-822	fructan biosynthesis
AMIR_RS03195	PWY-2201	folate transformations I
AMIR_RS03255	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS03285	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AMIR_RS03305	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMIR_RS03305	PWY-5667	CDP-diacylglycerol biosynthesis I
AMIR_RS03305	PWY-6453	stigma estolide biosynthesis
AMIR_RS03305	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AMIR_RS03305	PWY-7587	oleate biosynthesis III (cyanobacteria)
AMIR_RS03380	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS03380	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS03380	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS03380	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS03380	PWY-5723	Rubisco shunt
AMIR_RS03380	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS03380	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS03380	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS03380	PWY-7003	glycerol degradation to butanol
AMIR_RS03380	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS03380	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS03525	PWY-801	L-homocysteine and L-cysteine interconversion
AMIR_RS03615	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMIR_RS03615	PWY-6596	adenosine nucleotides degradation I
AMIR_RS03615	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS03625	PWY-5392	reductive TCA cycle II
AMIR_RS03625	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMIR_RS03625	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS03625	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS03625	PWY-6728	methylaspartate cycle
AMIR_RS03625	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS03625	PWY-7254	TCA cycle VII (acetate-producers)
AMIR_RS03625	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS03630	PWY-101	photosynthesis light reactions
AMIR_RS03630	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AMIR_RS03645	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS03745	PWY-7158	L-phenylalanine degradation V
AMIR_RS03845	PWY-2201	folate transformations I
AMIR_RS03845	PWY-5497	purine nucleobases degradation II (anaerobic)
AMIR_RS03900	PWY-6614	tetrahydrofolate biosynthesis
AMIR_RS03980	PWY-622	starch biosynthesis
AMIR_RS03985	PWY-622	starch biosynthesis
AMIR_RS04195	PWY-6683	sulfate reduction III (assimilatory)
AMIR_RS04205	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMIR_RS04205	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMIR_RS04210	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS04330	PWY-5381	pyridine nucleotide cycling (plants)
AMIR_RS04520	PWY-6654	phosphopantothenate biosynthesis III
AMIR_RS04540	PWY-5381	pyridine nucleotide cycling (plants)
AMIR_RS04540	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMIR_RS04545	PWY-381	nitrate reduction II (assimilatory)
AMIR_RS04545	PWY-5675	nitrate reduction V (assimilatory)
AMIR_RS04545	PWY-6549	L-glutamine biosynthesis III
AMIR_RS04545	PWY-6963	ammonia assimilation cycle I
AMIR_RS04545	PWY-6964	ammonia assimilation cycle II
AMIR_RS04635	PWY-381	nitrate reduction II (assimilatory)
AMIR_RS04635	PWY-5675	nitrate reduction V (assimilatory)
AMIR_RS04635	PWY-6549	L-glutamine biosynthesis III
AMIR_RS04635	PWY-6963	ammonia assimilation cycle I
AMIR_RS04635	PWY-6964	ammonia assimilation cycle II
AMIR_RS04935	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AMIR_RS04935	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AMIR_RS04945	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AMIR_RS04945	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS04945	PWY-6416	quinate degradation II
AMIR_RS04945	PWY-6707	gallate biosynthesis
AMIR_RS04950	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AMIR_RS04950	PWY-5389	3-methylthiopropanoate biosynthesis
AMIR_RS04960	PWY-3781	aerobic respiration I (cytochrome c)
AMIR_RS04960	PWY-4521	arsenite oxidation I (respiratory)
AMIR_RS04960	PWY-6692	Fe(II) oxidation
AMIR_RS04960	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMIR_RS04970	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AMIR_RS04985	PWY-3561	choline biosynthesis III
AMIR_RS04985	PWY-7039	phosphatidate metabolism, as a signaling molecule
AMIR_RS05020	PWY-7335	UDP-<i>N</i>-acetyl-&alpha;-D-mannosaminouronate biosynthesis
AMIR_RS05035	PWY-5381	pyridine nucleotide cycling (plants)
AMIR_RS05050	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS05070	PWY-6936	seleno-amino acid biosynthesis
AMIR_RS05090	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS05090	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS05120	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AMIR_RS05240	PWY-6527	stachyose degradation
AMIR_RS05425	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AMIR_RS05425	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMIR_RS05430	PWY-6853	ethylene biosynthesis II (microbes)
AMIR_RS05475	PWY-6902	chitin degradation II
AMIR_RS05665	PWY-5022	4-aminobutanoate degradation V
AMIR_RS05665	PWY-6728	methylaspartate cycle
AMIR_RS05665	PWY-7126	ethylene biosynthesis IV
AMIR_RS05670	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AMIR_RS05670	PWY-622	starch biosynthesis
AMIR_RS05730	PWY-4061	glutathione-mediated detoxification I
AMIR_RS05730	PWY-6842	glutathione-mediated detoxification II
AMIR_RS05730	PWY-7112	4-hydroxy-2-nonenal detoxification
AMIR_RS05855	PWY-2161	folate polyglutamylation
AMIR_RS05880	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS05880	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMIR_RS05880	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS05880	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS05880	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMIR_RS05880	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMIR_RS05880	PWY-7205	CMP phosphorylation
AMIR_RS05880	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMIR_RS05880	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS05880	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS05880	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS05880	PWY-7224	purine deoxyribonucleosides salvage
AMIR_RS05880	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS05880	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMIR_RS05960	PWY-3341	L-proline biosynthesis III
AMIR_RS05960	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMIR_RS05980	PWY-3341	L-proline biosynthesis III
AMIR_RS05980	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMIR_RS05995	PWY-5381	pyridine nucleotide cycling (plants)
AMIR_RS05995	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMIR_RS06115	PWY-6902	chitin degradation II
AMIR_RS06120	PWY-723	alkylnitronates degradation
AMIR_RS06170	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS06190	PWY-5278	sulfite oxidation III
AMIR_RS06190	PWY-5340	sulfate activation for sulfonation
AMIR_RS06190	PWY-6683	sulfate reduction III (assimilatory)
AMIR_RS06190	PWY-6932	selenate reduction
AMIR_RS06195	PWY-5278	sulfite oxidation III
AMIR_RS06195	PWY-5340	sulfate activation for sulfonation
AMIR_RS06195	PWY-6683	sulfate reduction III (assimilatory)
AMIR_RS06195	PWY-6932	selenate reduction
AMIR_RS06210	PWY-6683	sulfate reduction III (assimilatory)
AMIR_RS06230	PWY-2201	folate transformations I
AMIR_RS06355	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMIR_RS06355	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS06355	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMIR_RS06355	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMIR_RS06510	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS06510	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AMIR_RS06510	PWY-6936	seleno-amino acid biosynthesis
AMIR_RS06510	PWY-702	L-methionine biosynthesis II
AMIR_RS06650	PWY-4381	fatty acid biosynthesis initiation I
AMIR_RS06685	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS06685	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS06685	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS06720	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMIR_RS06720	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMIR_RS06740	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AMIR_RS06740	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AMIR_RS06775	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMIR_RS06775	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMIR_RS06800	PWY-5057	L-valine degradation II
AMIR_RS06800	PWY-5076	L-leucine degradation III
AMIR_RS06800	PWY-5078	L-isoleucine degradation II
AMIR_RS06800	PWY-5101	L-isoleucine biosynthesis II
AMIR_RS06800	PWY-5103	L-isoleucine biosynthesis III
AMIR_RS06800	PWY-5104	L-isoleucine biosynthesis IV
AMIR_RS06800	PWY-5108	L-isoleucine biosynthesis V
AMIR_RS06805	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AMIR_RS06805	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMIR_RS06805	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMIR_RS06810	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AMIR_RS06810	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMIR_RS06810	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMIR_RS06815	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AMIR_RS06815	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMIR_RS06815	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMIR_RS06860	PWY-3781	aerobic respiration I (cytochrome c)
AMIR_RS06860	PWY-4521	arsenite oxidation I (respiratory)
AMIR_RS06860	PWY-6692	Fe(II) oxidation
AMIR_RS06860	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMIR_RS06990	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS06990	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMIR_RS06990	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS06990	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMIR_RS06995	PWY-6164	3-dehydroquinate biosynthesis I
AMIR_RS07025	PWY-2201	folate transformations I
AMIR_RS07025	PWY-3841	folate transformations II
AMIR_RS07125	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS07125	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMIR_RS07125	PWY-7242	D-fructuronate degradation
AMIR_RS07125	PWY-7310	D-glucosaminate degradation
AMIR_RS07125	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AMIR_RS07130	PWY-5101	L-isoleucine biosynthesis II
AMIR_RS07130	PWY-5103	L-isoleucine biosynthesis III
AMIR_RS07130	PWY-5104	L-isoleucine biosynthesis IV
AMIR_RS07130	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMIR_RS07150	PWY-3781	aerobic respiration I (cytochrome c)
AMIR_RS07150	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMIR_RS07150	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMIR_RS07150	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS07150	PWY-6728	methylaspartate cycle
AMIR_RS07150	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS07150	PWY-7254	TCA cycle VII (acetate-producers)
AMIR_RS07150	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMIR_RS07170	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS07170	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS07170	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMIR_RS07170	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMIR_RS07170	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS07170	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS07170	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS07170	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMIR_RS07210	PWY-2941	L-lysine biosynthesis II
AMIR_RS07210	PWY-5097	L-lysine biosynthesis VI
AMIR_RS07215	PWY-2781	<i>cis</i>-zeatin biosynthesis
AMIR_RS07330	PWY-3821	galactose degradation III
AMIR_RS07330	PWY-6317	galactose degradation I (Leloir pathway)
AMIR_RS07330	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMIR_RS07330	PWY-6527	stachyose degradation
AMIR_RS07330	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMIR_RS07330	PWY-7344	UDP-D-galactose biosynthesis
AMIR_RS07335	PWY-3821	galactose degradation III
AMIR_RS07335	PWY-6317	galactose degradation I (Leloir pathway)
AMIR_RS07335	PWY-6527	stachyose degradation
AMIR_RS07360	PWY-5392	reductive TCA cycle II
AMIR_RS07360	PWY-5537	pyruvate fermentation to acetate V
AMIR_RS07360	PWY-5538	pyruvate fermentation to acetate VI
AMIR_RS07360	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS07360	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS07360	PWY-6728	methylaspartate cycle
AMIR_RS07360	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS07360	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS07465	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS07465	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS07465	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS07465	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS07465	PWY-5723	Rubisco shunt
AMIR_RS07465	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS07465	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS07465	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS07465	PWY-7003	glycerol degradation to butanol
AMIR_RS07465	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS07465	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS07485	PWY-5392	reductive TCA cycle II
AMIR_RS07485	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMIR_RS07485	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS07485	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS07485	PWY-6728	methylaspartate cycle
AMIR_RS07485	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS07485	PWY-7254	TCA cycle VII (acetate-producers)
AMIR_RS07485	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS07520	PWY-6019	pseudouridine degradation
AMIR_RS07600	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS07600	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS07600	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS07600	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
AMIR_RS07645	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS07645	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS07645	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS07750	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMIR_RS07750	PWY-5109	2-methylbutanoate biosynthesis
AMIR_RS07750	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMIR_RS07750	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMIR_RS07750	PWY-5177	glutaryl-CoA degradation
AMIR_RS07750	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS07750	PWY-6435	4-hydroxybenzoate biosynthesis V
AMIR_RS07750	PWY-6583	pyruvate fermentation to butanol I
AMIR_RS07750	PWY-6863	pyruvate fermentation to hexanol
AMIR_RS07750	PWY-6883	pyruvate fermentation to butanol II
AMIR_RS07750	PWY-6944	androstenedione degradation
AMIR_RS07750	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS07750	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS07750	PWY-7007	methyl ketone biosynthesis
AMIR_RS07750	PWY-7046	4-coumarate degradation (anaerobic)
AMIR_RS07750	PWY-7094	fatty acid salvage
AMIR_RS07750	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMIR_RS07750	PWY-735	jasmonic acid biosynthesis
AMIR_RS07750	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMIR_RS07750	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMIR_RS07750	PWY-7726	AMIR_RS07750
AMIR_RS07785	PWY-7533	gliotoxin biosynthesis
AMIR_RS07795	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AMIR_RS07795	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMIR_RS07800	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AMIR_RS07965	PWY-3341	L-proline biosynthesis III
AMIR_RS07965	PWY-4981	L-proline biosynthesis II (from arginine)
AMIR_RS07965	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMIR_RS07965	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AMIR_RS08105	PWY-7205	CMP phosphorylation
AMIR_RS08365	PWY-6527	stachyose degradation
AMIR_RS08455	PWY-3121	linamarin degradation
AMIR_RS08455	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AMIR_RS08455	PWY-6002	lotaustralin degradation
AMIR_RS08455	PWY-6788	cellulose degradation II (fungi)
AMIR_RS08455	PWY-7089	taxiphyllin bioactivation
AMIR_RS08455	PWY-7091	linustatin bioactivation
AMIR_RS08455	PWY-7092	neolinustatin bioactivation
AMIR_RS08525	PWY-6605	adenine and adenosine salvage II
AMIR_RS08525	PWY-6610	adenine and adenosine salvage IV
AMIR_RS08605	PWY-4381	fatty acid biosynthesis initiation I
AMIR_RS08605	PWY-5743	3-hydroxypropanoate cycle
AMIR_RS08605	PWY-5744	glyoxylate assimilation
AMIR_RS08605	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS08605	PWY-6679	jadomycin biosynthesis
AMIR_RS08605	PWY-6722	candicidin biosynthesis
AMIR_RS08605	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMIR_RS08795	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AMIR_RS08795	PWY-622	starch biosynthesis
AMIR_RS08915	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS08915	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS08920	PWY-2201	folate transformations I
AMIR_RS08920	PWY-3841	folate transformations II
AMIR_RS08920	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS08925	PWY-5194	siroheme biosynthesis
AMIR_RS08925	PWY-5441	S-methyl-L-methionine cycle
AMIR_RS08925	PWY-702	L-methionine biosynthesis II
AMIR_RS08925	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS08935	PWY-5194	siroheme biosynthesis
AMIR_RS08935	PWY-5441	S-methyl-L-methionine cycle
AMIR_RS08935	PWY-702	L-methionine biosynthesis II
AMIR_RS08935	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS08945	PWY-6683	sulfate reduction III (assimilatory)
AMIR_RS08970	PWY-3121	linamarin degradation
AMIR_RS08970	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AMIR_RS08970	PWY-6002	lotaustralin degradation
AMIR_RS08970	PWY-6788	cellulose degradation II (fungi)
AMIR_RS08970	PWY-7089	taxiphyllin bioactivation
AMIR_RS08970	PWY-7091	linustatin bioactivation
AMIR_RS08970	PWY-7092	neolinustatin bioactivation
AMIR_RS09010	PWY-4261	glycerol degradation I
AMIR_RS09230	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMIR_RS09230	PWY-5491	diethylphosphate degradation
AMIR_RS09270	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS09270	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS09270	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS09270	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS09270	PWY-5723	Rubisco shunt
AMIR_RS09270	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS09270	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS09270	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS09270	PWY-7003	glycerol degradation to butanol
AMIR_RS09270	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS09270	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS09280	PWY-6654	phosphopantothenate biosynthesis III
AMIR_RS09340	PWY-4261	glycerol degradation I
AMIR_RS09395	PWY-6807	xyloglucan degradation II (exoglucanase)
AMIR_RS09585	PWY-5392	reductive TCA cycle II
AMIR_RS09585	PWY-5537	pyruvate fermentation to acetate V
AMIR_RS09585	PWY-5538	pyruvate fermentation to acetate VI
AMIR_RS09585	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS09585	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS09585	PWY-6728	methylaspartate cycle
AMIR_RS09585	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS09585	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS09615	PWY-5482	pyruvate fermentation to acetate II
AMIR_RS09615	PWY-5485	pyruvate fermentation to acetate IV
AMIR_RS09615	PWY-5497	purine nucleobases degradation II (anaerobic)
AMIR_RS09895	PWY-6807	xyloglucan degradation II (exoglucanase)
AMIR_RS10015	PWY-6164	3-dehydroquinate biosynthesis I
AMIR_RS10040	PWY-6728	methylaspartate cycle
AMIR_RS10040	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS10040	PWY-7118	chitin degradation to ethanol
AMIR_RS10040	PWY-7294	xylose degradation IV
AMIR_RS10040	PWY-7295	L-arabinose degradation IV
AMIR_RS10045	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS10145	PWY-6409	pyoverdine I biosynthesis
AMIR_RS10145	PWY-6562	norspermidine biosynthesis
AMIR_RS10145	PWY-761	rhizobactin 1021 biosynthesis
AMIR_RS10160	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AMIR_RS10160	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AMIR_RS10265	PWY-4983	L-citrulline-nitric oxide cycle
AMIR_RS10265	PWY-4984	urea cycle
AMIR_RS10265	PWY-5	canavanine biosynthesis
AMIR_RS10265	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS10265	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS10350	PWY-5691	urate degradation to allantoin I
AMIR_RS10350	PWY-7394	urate degradation to allantoin II
AMIR_RS10400	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMIR_RS10400	PWY-5109	2-methylbutanoate biosynthesis
AMIR_RS10400	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMIR_RS10400	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMIR_RS10400	PWY-5177	glutaryl-CoA degradation
AMIR_RS10400	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS10400	PWY-6435	4-hydroxybenzoate biosynthesis V
AMIR_RS10400	PWY-6583	pyruvate fermentation to butanol I
AMIR_RS10400	PWY-6863	pyruvate fermentation to hexanol
AMIR_RS10400	PWY-6883	pyruvate fermentation to butanol II
AMIR_RS10400	PWY-6944	androstenedione degradation
AMIR_RS10400	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS10400	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS10400	PWY-7007	methyl ketone biosynthesis
AMIR_RS10400	PWY-7046	4-coumarate degradation (anaerobic)
AMIR_RS10400	PWY-7094	fatty acid salvage
AMIR_RS10400	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMIR_RS10400	PWY-735	jasmonic acid biosynthesis
AMIR_RS10400	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMIR_RS10400	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMIR_RS10400	PWY-7726	AMIR_RS10400
AMIR_RS10415	PWY-381	nitrate reduction II (assimilatory)
AMIR_RS10415	PWY-5675	nitrate reduction V (assimilatory)
AMIR_RS10415	PWY-6549	L-glutamine biosynthesis III
AMIR_RS10415	PWY-6963	ammonia assimilation cycle I
AMIR_RS10415	PWY-6964	ammonia assimilation cycle II
AMIR_RS10555	PWY-5642	2,4-dinitrotoluene degradation
AMIR_RS10555	PWY-6373	acrylate degradation
AMIR_RS10570	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AMIR_RS10575	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AMIR_RS10645	PWY-6840	homoglutathione biosynthesis
AMIR_RS10645	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS10650	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS10655	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS10660	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS10660	PWY-7550	ergothioneine biosynthesis II (fungi)
AMIR_RS10855	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS10855	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMIR_RS10855	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS10855	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMIR_RS10900	PWY-6807	xyloglucan degradation II (exoglucanase)
AMIR_RS10940	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMIR_RS10940	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMIR_RS10940	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMIR_RS10940	PWY-6113	superpathway of mycolate biosynthesis
AMIR_RS10940	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMIR_RS10940	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMIR_RS10940	PWY-7663	gondoate biosynthesis (anaerobic)
AMIR_RS10940	PWY-7664	oleate biosynthesis IV (anaerobic)
AMIR_RS10940	PWYG-321	mycolate biosynthesis
AMIR_RS11020	PWY-3781	aerobic respiration I (cytochrome c)
AMIR_RS11020	PWY-4521	arsenite oxidation I (respiratory)
AMIR_RS11020	PWY-6692	Fe(II) oxidation
AMIR_RS11020	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMIR_RS11085	PWY-2201	folate transformations I
AMIR_RS11085	PWY-3841	folate transformations II
AMIR_RS11170	PWY-6829	tRNA methylation (yeast)
AMIR_RS11260	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMIR_RS11260	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMIR_RS11260	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AMIR_RS11355	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS11575	PWY-6840	homoglutathione biosynthesis
AMIR_RS11575	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS11745	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS12110	PWY-5480	pyruvate fermentation to ethanol I
AMIR_RS12110	PWY-5485	pyruvate fermentation to acetate IV
AMIR_RS12110	PWY-5493	reductive monocarboxylic acid cycle
AMIR_RS12345	PWY-6807	xyloglucan degradation II (exoglucanase)
AMIR_RS12475	PWY-723	alkylnitronates degradation
AMIR_RS12480	PWY-6012	acyl carrier protein metabolism I
AMIR_RS12480	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AMIR_RS12710	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AMIR_RS12830	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS12885	PWY-6807	xyloglucan degradation II (exoglucanase)
AMIR_RS12935	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMIR_RS13235	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS13235	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS13235	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS13235	PWY-7003	glycerol degradation to butanol
AMIR_RS13245	PWY-5103	L-isoleucine biosynthesis III
AMIR_RS13245	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMIR_RS13310	PWY-4981	L-proline biosynthesis II (from arginine)
AMIR_RS13590	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AMIR_RS13590	PWY-6164	3-dehydroquinate biosynthesis I
AMIR_RS13590	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AMIR_RS13635	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AMIR_RS13645	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AMIR_RS13645	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AMIR_RS13645	PWY-6406	salicylate biosynthesis I
AMIR_RS13650	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AMIR_RS13710	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS13710	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS13710	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS13710	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS13710	PWY-5723	Rubisco shunt
AMIR_RS13710	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS13710	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS13710	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS13710	PWY-7003	glycerol degradation to butanol
AMIR_RS13710	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS13710	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS13820	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS13820	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS14110	PWY-3821	galactose degradation III
AMIR_RS14110	PWY-6317	galactose degradation I (Leloir pathway)
AMIR_RS14110	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AMIR_RS14110	PWY-6527	stachyose degradation
AMIR_RS14110	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AMIR_RS14110	PWY-7344	UDP-D-galactose biosynthesis
AMIR_RS15135	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMIR_RS15390	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS15390	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AMIR_RS15390	PWY-6936	seleno-amino acid biosynthesis
AMIR_RS15390	PWY-702	L-methionine biosynthesis II
AMIR_RS15505	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS15510	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS15510	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AMIR_RS15525	PWY-6527	stachyose degradation
AMIR_RS15645	PWY-4381	fatty acid biosynthesis initiation I
AMIR_RS15655	PWY-4381	fatty acid biosynthesis initiation I
AMIR_RS15775	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS15775	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS15775	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMIR_RS15775	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMIR_RS15775	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS15775	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS15775	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS15775	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMIR_RS15780	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS15780	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS15780	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMIR_RS15780	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMIR_RS15780	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS15780	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS15780	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS15780	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMIR_RS15915	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMIR_RS15915	PWY-5109	2-methylbutanoate biosynthesis
AMIR_RS15915	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMIR_RS15915	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMIR_RS15915	PWY-5177	glutaryl-CoA degradation
AMIR_RS15915	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS15915	PWY-6435	4-hydroxybenzoate biosynthesis V
AMIR_RS15915	PWY-6583	pyruvate fermentation to butanol I
AMIR_RS15915	PWY-6863	pyruvate fermentation to hexanol
AMIR_RS15915	PWY-6883	pyruvate fermentation to butanol II
AMIR_RS15915	PWY-6944	androstenedione degradation
AMIR_RS15915	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS15915	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS15915	PWY-7007	methyl ketone biosynthesis
AMIR_RS15915	PWY-7046	4-coumarate degradation (anaerobic)
AMIR_RS15915	PWY-7094	fatty acid salvage
AMIR_RS15915	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMIR_RS15915	PWY-735	jasmonic acid biosynthesis
AMIR_RS15915	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMIR_RS15915	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMIR_RS15915	PWY-7726	AMIR_RS15915
AMIR_RS15965	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS15965	PWY-6416	quinate degradation II
AMIR_RS15965	PWY-6707	gallate biosynthesis
AMIR_RS16070	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMIR_RS16170	PWY-2941	L-lysine biosynthesis II
AMIR_RS16170	PWY-2942	L-lysine biosynthesis III
AMIR_RS16170	PWY-5097	L-lysine biosynthesis VI
AMIR_RS16380	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMIR_RS16380	PWY-5109	2-methylbutanoate biosynthesis
AMIR_RS16380	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMIR_RS16380	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMIR_RS16380	PWY-5177	glutaryl-CoA degradation
AMIR_RS16380	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS16380	PWY-6435	4-hydroxybenzoate biosynthesis V
AMIR_RS16380	PWY-6583	pyruvate fermentation to butanol I
AMIR_RS16380	PWY-6863	pyruvate fermentation to hexanol
AMIR_RS16380	PWY-6883	pyruvate fermentation to butanol II
AMIR_RS16380	PWY-6944	androstenedione degradation
AMIR_RS16380	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS16380	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS16380	PWY-7007	methyl ketone biosynthesis
AMIR_RS16380	PWY-7046	4-coumarate degradation (anaerobic)
AMIR_RS16380	PWY-7094	fatty acid salvage
AMIR_RS16380	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMIR_RS16380	PWY-735	jasmonic acid biosynthesis
AMIR_RS16380	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMIR_RS16380	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMIR_RS16380	PWY-7726	AMIR_RS16380
AMIR_RS16415	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS16415	PWY-6416	quinate degradation II
AMIR_RS16415	PWY-6707	gallate biosynthesis
AMIR_RS16465	PWY-6164	3-dehydroquinate biosynthesis I
AMIR_RS16485	PWY-6854	ethylene biosynthesis III (microbes)
AMIR_RS16575	PWY-6303	methyl indole-3-acetate interconversion
AMIR_RS16575	PWY-6857	retinol biosynthesis
AMIR_RS16660	PWY-6788	cellulose degradation II (fungi)
AMIR_RS16825	PWY-5482	pyruvate fermentation to acetate II
AMIR_RS16825	PWY-5485	pyruvate fermentation to acetate IV
AMIR_RS16825	PWY-5497	purine nucleobases degradation II (anaerobic)
AMIR_RS17010	PWY-7199	pyrimidine deoxyribonucleosides salvage
AMIR_RS17050	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS17050	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS17110	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMIR_RS17470	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS17470	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS17565	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AMIR_RS18395	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS18395	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS18500	PWY-6654	phosphopantothenate biosynthesis III
AMIR_RS18565	PWY-3781	aerobic respiration I (cytochrome c)
AMIR_RS18565	PWY-4521	arsenite oxidation I (respiratory)
AMIR_RS18565	PWY-6692	Fe(II) oxidation
AMIR_RS18565	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMIR_RS18570	PWY-7723	AMIR_RS18570
AMIR_RS18575	PWY-7723	AMIR_RS18575
AMIR_RS18670	PWY-5451	acetone degradation I (to methylglyoxal)
AMIR_RS18670	PWY-6588	pyruvate fermentation to acetone
AMIR_RS18670	PWY-6876	isopropanol biosynthesis
AMIR_RS18670	PWY-7466	acetone degradation III (to propane-1,2-diol)
AMIR_RS18920	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS18930	PWY-6527	stachyose degradation
AMIR_RS18950	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS18950	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS18950	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS19015	PWY-5839	menaquinol-7 biosynthesis
AMIR_RS19015	PWY-5844	menaquinol-9 biosynthesis
AMIR_RS19015	PWY-5849	menaquinol-6 biosynthesis
AMIR_RS19015	PWY-5890	menaquinol-10 biosynthesis
AMIR_RS19015	PWY-5891	menaquinol-11 biosynthesis
AMIR_RS19015	PWY-5892	menaquinol-12 biosynthesis
AMIR_RS19015	PWY-5895	menaquinol-13 biosynthesis
AMIR_RS19020	PWY-5943	&beta;-carotene biosynthesis
AMIR_RS19020	PWY-5947	lutein biosynthesis
AMIR_RS19020	PWY-7591	okenone biosynthesis
AMIR_RS19025	PWY-5943	&beta;-carotene biosynthesis
AMIR_RS19025	PWY-5947	lutein biosynthesis
AMIR_RS19025	PWY-7591	okenone biosynthesis
AMIR_RS19415	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMIR_RS19415	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMIR_RS19415	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMIR_RS19415	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMIR_RS19465	PWY-6902	chitin degradation II
AMIR_RS19825	PWY-6168	flavin biosynthesis III (fungi)
AMIR_RS19825	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMIR_RS19835	PWY-5525	D-glucuronate degradation I
AMIR_RS19860	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMIR_RS19870	PWY-4061	glutathione-mediated detoxification I
AMIR_RS19870	PWY-6842	glutathione-mediated detoxification II
AMIR_RS19870	PWY-7112	4-hydroxy-2-nonenal detoxification
AMIR_RS19870	PWY-7533	gliotoxin biosynthesis
AMIR_RS19985	PWY-6854	ethylene biosynthesis III (microbes)
AMIR_RS20005	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AMIR_RS20005	PWY-2201	folate transformations I
AMIR_RS20005	PWY-3841	folate transformations II
AMIR_RS20005	PWY-5030	L-histidine degradation III
AMIR_RS20005	PWY-5497	purine nucleobases degradation II (anaerobic)
AMIR_RS20005	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMIR_RS20010	PWY-5344	L-homocysteine biosynthesis
AMIR_RS20010	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AMIR_RS20145	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS20145	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS20145	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS20145	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS20145	PWY-5723	Rubisco shunt
AMIR_RS20145	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS20145	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS20145	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS20145	PWY-7003	glycerol degradation to butanol
AMIR_RS20145	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS20145	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS20230	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS20580	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS20580	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS20580	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS20580	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS20580	PWY-5723	Rubisco shunt
AMIR_RS20580	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS20580	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS20580	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS20580	PWY-7003	glycerol degradation to butanol
AMIR_RS20580	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS20580	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS20600	PWY-2582	brassinosteroid biosynthesis II
AMIR_RS20600	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS20600	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS20600	PWY-6948	sitosterol degradation to androstenedione
AMIR_RS20600	PWY-699	brassinosteroid biosynthesis I
AMIR_RS20600	PWY-7299	progesterone biosynthesis
AMIR_RS20885	PWY-5506	methanol oxidation to formaldehyde IV
AMIR_RS20905	PWY-1081	homogalacturonan degradation
AMIR_RS20905	PWY-7246	pectin degradation II
AMIR_RS20905	PWY-7248	pectin degradation III
AMIR_RS20920	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AMIR_RS20935	PWY-6409	pyoverdine I biosynthesis
AMIR_RS20935	PWY-6562	norspermidine biosynthesis
AMIR_RS20935	PWY-761	rhizobactin 1021 biosynthesis
AMIR_RS20975	PWY-5350	thiosulfate disproportionation III (rhodanese)
AMIR_RS21080	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS21080	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS21100	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMIR_RS21105	PWY-4381	fatty acid biosynthesis initiation I
AMIR_RS21105	PWY-5743	3-hydroxypropanoate cycle
AMIR_RS21105	PWY-5744	glyoxylate assimilation
AMIR_RS21105	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS21105	PWY-6679	jadomycin biosynthesis
AMIR_RS21105	PWY-6722	candicidin biosynthesis
AMIR_RS21105	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMIR_RS21215	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS21215	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS21230	PWY-6164	3-dehydroquinate biosynthesis I
AMIR_RS21450	PWY-5350	thiosulfate disproportionation III (rhodanese)
AMIR_RS21740	PWY-723	alkylnitronates degradation
AMIR_RS21765	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMIR_RS21765	PWY-5109	2-methylbutanoate biosynthesis
AMIR_RS21765	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMIR_RS21765	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMIR_RS21765	PWY-5177	glutaryl-CoA degradation
AMIR_RS21765	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS21765	PWY-6435	4-hydroxybenzoate biosynthesis V
AMIR_RS21765	PWY-6583	pyruvate fermentation to butanol I
AMIR_RS21765	PWY-6863	pyruvate fermentation to hexanol
AMIR_RS21765	PWY-6883	pyruvate fermentation to butanol II
AMIR_RS21765	PWY-6944	androstenedione degradation
AMIR_RS21765	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS21765	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS21765	PWY-7007	methyl ketone biosynthesis
AMIR_RS21765	PWY-7046	4-coumarate degradation (anaerobic)
AMIR_RS21765	PWY-7094	fatty acid salvage
AMIR_RS21765	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMIR_RS21765	PWY-735	jasmonic acid biosynthesis
AMIR_RS21765	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMIR_RS21765	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMIR_RS21765	PWY-7726	AMIR_RS21765
AMIR_RS22140	PWY-2582	brassinosteroid biosynthesis II
AMIR_RS22140	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS22140	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS22140	PWY-6948	sitosterol degradation to androstenedione
AMIR_RS22140	PWY-699	brassinosteroid biosynthesis I
AMIR_RS22140	PWY-7299	progesterone biosynthesis
AMIR_RS22160	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS22160	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS22160	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMIR_RS22160	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMIR_RS22160	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS22160	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS22160	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS22160	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AMIR_RS22235	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS22235	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS22385	PWY-5443	aminopropanol phosphate biosynthesis I
AMIR_RS22405	PWY-4983	L-citrulline-nitric oxide cycle
AMIR_RS22405	PWY-4984	urea cycle
AMIR_RS22405	PWY-5	canavanine biosynthesis
AMIR_RS22405	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS22405	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS23055	PWY-6807	xyloglucan degradation II (exoglucanase)
AMIR_RS23160	PWY-6123	inosine-5'-phosphate biosynthesis I
AMIR_RS23160	PWY-6124	inosine-5'-phosphate biosynthesis II
AMIR_RS23160	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS23160	PWY-7234	inosine-5'-phosphate biosynthesis III
AMIR_RS23205	PWY-1081	homogalacturonan degradation
AMIR_RS23205	PWY-7246	pectin degradation II
AMIR_RS23205	PWY-7248	pectin degradation III
AMIR_RS23240	PWY-5098	chlorophyll <i>a</i> degradation I
AMIR_RS23240	PWY-6927	chlorophyll <i>a</i> degradation II
AMIR_RS23240	PWY-7164	chlorophyll <i>a</i> degradation III
AMIR_RS23375	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS23375	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS23510	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AMIR_RS23520	PWY-7181	pyrimidine deoxyribonucleosides degradation
AMIR_RS23530	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMIR_RS23630	PWY-6523	nitrite-dependent anaerobic methane oxidation
AMIR_RS23630	PWY-6748	nitrate reduction VII (denitrification)
AMIR_RS23630	PWY-7084	nitrifier denitrification
AMIR_RS23795	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMIR_RS24065	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMIR_RS24065	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMIR_RS24065	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMIR_RS24065	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMIR_RS24080	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMIR_RS24080	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMIR_RS24080	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMIR_RS24080	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMIR_RS24105	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AMIR_RS24105	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AMIR_RS24105	PWY-5989	stearate biosynthesis II (bacteria and plants)
AMIR_RS24105	PWY-6113	superpathway of mycolate biosynthesis
AMIR_RS24105	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AMIR_RS24105	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AMIR_RS24105	PWY-7663	gondoate biosynthesis (anaerobic)
AMIR_RS24105	PWY-7664	oleate biosynthesis IV (anaerobic)
AMIR_RS24105	PWYG-321	mycolate biosynthesis
AMIR_RS24295	PWY-5686	UMP biosynthesis
AMIR_RS24425	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS24425	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS24550	PWY-5381	pyridine nucleotide cycling (plants)
AMIR_RS24550	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMIR_RS24550	PWY-6596	adenosine nucleotides degradation I
AMIR_RS24550	PWY-6606	guanosine nucleotides degradation II
AMIR_RS24550	PWY-6607	guanosine nucleotides degradation I
AMIR_RS24550	PWY-6608	guanosine nucleotides degradation III
AMIR_RS24550	PWY-7185	UTP and CTP dephosphorylation I
AMIR_RS24660	PWY-1081	homogalacturonan degradation
AMIR_RS24660	PWY-7246	pectin degradation II
AMIR_RS24660	PWY-7248	pectin degradation III
AMIR_RS24880	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AMIR_RS24880	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AMIR_RS24880	PWY-7717	AMIR_RS24880
AMIR_RS24880	PWY-7733	AMIR_RS24880
AMIR_RS24880	PWY-7734	AMIR_RS24880
AMIR_RS24915	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS24915	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS24915	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS25090	PWY-6531	mannitol cycle
AMIR_RS25095	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS25095	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS25095	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS25095	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS25095	PWY-5723	Rubisco shunt
AMIR_RS25095	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS25095	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS25095	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS25095	PWY-7003	glycerol degradation to butanol
AMIR_RS25095	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS25095	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS25155	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AMIR_RS25330	PWY-2661	trehalose biosynthesis V
AMIR_RS25330	PWY-6902	chitin degradation II
AMIR_RS25335	PWY-2661	trehalose biosynthesis V
AMIR_RS25350	PWY-5941	glycogen degradation II (eukaryotic)
AMIR_RS25350	PWY-6724	starch degradation II
AMIR_RS25350	PWY-6737	starch degradation V
AMIR_RS25350	PWY-7238	sucrose biosynthesis II
AMIR_RS25515	PWY-6840	homoglutathione biosynthesis
AMIR_RS25515	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS25535	PWY-6823	molybdenum cofactor biosynthesis
AMIR_RS25535	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS25535	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS25535	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMIR_RS25720	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMIR_RS25720	PWY-5723	Rubisco shunt
AMIR_RS25720	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS25720	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS25720	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS25720	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS25725	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMIR_RS25725	PWY-5723	Rubisco shunt
AMIR_RS25730	PWY-3801	sucrose degradation II (sucrose synthase)
AMIR_RS25730	PWY-5054	sorbitol biosynthesis I
AMIR_RS25730	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AMIR_RS25730	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMIR_RS25730	PWY-5659	GDP-mannose biosynthesis
AMIR_RS25730	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS25730	PWY-621	sucrose degradation III (sucrose invertase)
AMIR_RS25730	PWY-622	starch biosynthesis
AMIR_RS25730	PWY-6981	chitin biosynthesis
AMIR_RS25730	PWY-6992	1,5-anhydrofructose degradation
AMIR_RS25730	PWY-7238	sucrose biosynthesis II
AMIR_RS25730	PWY-7347	sucrose biosynthesis III
AMIR_RS25730	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMIR_RS25735	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMIR_RS25745	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMIR_RS25745	PWY-6855	chitin degradation I (archaea)
AMIR_RS25745	PWY-6906	chitin derivatives degradation
AMIR_RS25775	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS25775	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS25775	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS25775	PWY-7003	glycerol degradation to butanol
AMIR_RS25780	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS25780	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS25780	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS25780	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS25780	PWY-7003	glycerol degradation to butanol
AMIR_RS25785	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS25785	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS25785	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS25785	PWY-7003	glycerol degradation to butanol
AMIR_RS25870	PWY-6167	flavin biosynthesis II (archaea)
AMIR_RS25870	PWY-6168	flavin biosynthesis III (fungi)
AMIR_RS25875	PWY-6167	flavin biosynthesis II (archaea)
AMIR_RS25875	PWY-6168	flavin biosynthesis III (fungi)
AMIR_RS25875	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AMIR_RS25880	PWY-6167	flavin biosynthesis II (archaea)
AMIR_RS25880	PWY-6168	flavin biosynthesis III (fungi)
AMIR_RS25880	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS25885	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMIR_RS25885	PWY-5723	Rubisco shunt
AMIR_RS25900	PWY-6825	phosphatidylcholine biosynthesis V
AMIR_RS25940	PWY-4041	&gamma;-glutamyl cycle
AMIR_RS25940	PWY-5826	hypoglycin biosynthesis
AMIR_RS25955	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS25955	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AMIR_RS25970	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS25980	PWY-5686	UMP biosynthesis
AMIR_RS25985	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS25985	PWY-5686	UMP biosynthesis
AMIR_RS25985	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS25990	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS25990	PWY-5686	UMP biosynthesis
AMIR_RS25990	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS26000	PWY-5686	UMP biosynthesis
AMIR_RS26005	PWY-5686	UMP biosynthesis
AMIR_RS26010	PWY-7183	pyrimidine nucleobases salvage I
AMIR_RS26040	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS26040	PWY-6416	quinate degradation II
AMIR_RS26040	PWY-6707	gallate biosynthesis
AMIR_RS26045	PWY-6164	3-dehydroquinate biosynthesis I
AMIR_RS26050	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS26055	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS26090	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS26090	PWY-6164	3-dehydroquinate biosynthesis I
AMIR_RS26090	PWY-6416	quinate degradation II
AMIR_RS26090	PWY-6707	gallate biosynthesis
AMIR_RS26140	PWY-7193	pyrimidine ribonucleosides salvage I
AMIR_RS26205	PWY-6012	acyl carrier protein metabolism I
AMIR_RS26205	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AMIR_RS26245	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AMIR_RS26245	PWY-6174	mevalonate pathway II (archaea)
AMIR_RS26245	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AMIR_RS26245	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AMIR_RS26245	PWY-7102	bisabolene biosynthesis
AMIR_RS26245	PWY-7391	isoprene biosynthesis II (engineered)
AMIR_RS26245	PWY-7524	mevalonate pathway III (archaea)
AMIR_RS26245	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS26245	PWY-922	mevalonate pathway I
AMIR_RS26450	PWY-6902	chitin degradation II
AMIR_RS26460	PWY-6788	cellulose degradation II (fungi)
AMIR_RS26555	PWY-5269	cardiolipin biosynthesis II
AMIR_RS26555	PWY-5668	cardiolipin biosynthesis I
AMIR_RS26770	PWY-6840	homoglutathione biosynthesis
AMIR_RS26770	PWY-7255	ergothioneine biosynthesis I (bacteria)
AMIR_RS26935	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AMIR_RS26935	PWY-7177	UTP and CTP dephosphorylation II
AMIR_RS26935	PWY-7185	UTP and CTP dephosphorylation I
AMIR_RS26945	PWY-6898	thiamin salvage III
AMIR_RS26945	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AMIR_RS26945	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AMIR_RS26945	PWY-7356	thiamin salvage IV (yeast)
AMIR_RS26960	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AMIR_RS26960	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMIR_RS26960	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AMIR_RS27015	PWY-4983	L-citrulline-nitric oxide cycle
AMIR_RS27015	PWY-4984	urea cycle
AMIR_RS27015	PWY-5	canavanine biosynthesis
AMIR_RS27015	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS27015	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS27020	PWY-4983	L-citrulline-nitric oxide cycle
AMIR_RS27020	PWY-4984	urea cycle
AMIR_RS27020	PWY-5	canavanine biosynthesis
AMIR_RS27020	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS27020	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS27030	PWY-4981	L-proline biosynthesis II (from arginine)
AMIR_RS27030	PWY-4984	urea cycle
AMIR_RS27030	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS27040	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS27040	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS27045	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS27050	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AMIR_RS27050	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AMIR_RS27165	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS27235	PWY-5386	methylglyoxal degradation I
AMIR_RS28005	PWY-5958	acridone alkaloid biosynthesis
AMIR_RS28005	PWY-6543	4-aminobenzoate biosynthesis
AMIR_RS28005	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMIR_RS28005	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMIR_RS28030	PWY-6834	spermidine biosynthesis III
AMIR_RS28050	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS28050	PWY-181	photorespiration
AMIR_RS28050	PWY-2161	folate polyglutamylation
AMIR_RS28050	PWY-2201	folate transformations I
AMIR_RS28050	PWY-3661	glycine betaine degradation I
AMIR_RS28050	PWY-3661-1	glycine betaine degradation II (mammalian)
AMIR_RS28050	PWY-3841	folate transformations II
AMIR_RS28050	PWY-5497	purine nucleobases degradation II (anaerobic)
AMIR_RS28100	PWY-1361	benzoyl-CoA degradation I (aerobic)
AMIR_RS28100	PWY-5109	2-methylbutanoate biosynthesis
AMIR_RS28100	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AMIR_RS28100	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AMIR_RS28100	PWY-5177	glutaryl-CoA degradation
AMIR_RS28100	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS28100	PWY-6435	4-hydroxybenzoate biosynthesis V
AMIR_RS28100	PWY-6583	pyruvate fermentation to butanol I
AMIR_RS28100	PWY-6863	pyruvate fermentation to hexanol
AMIR_RS28100	PWY-6883	pyruvate fermentation to butanol II
AMIR_RS28100	PWY-6944	androstenedione degradation
AMIR_RS28100	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AMIR_RS28100	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AMIR_RS28100	PWY-7007	methyl ketone biosynthesis
AMIR_RS28100	PWY-7046	4-coumarate degradation (anaerobic)
AMIR_RS28100	PWY-7094	fatty acid salvage
AMIR_RS28100	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AMIR_RS28100	PWY-735	jasmonic acid biosynthesis
AMIR_RS28100	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AMIR_RS28100	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AMIR_RS28100	PWY-7726	AMIR_RS28100
AMIR_RS28165	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AMIR_RS28165	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS28165	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMIR_RS28165	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AMIR_RS28190	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS28190	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AMIR_RS28190	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS28190	PWY-5723	Rubisco shunt
AMIR_RS28190	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS28190	PWY-6886	1-butanol autotrophic biosynthesis
AMIR_RS28190	PWY-6901	superpathway of glucose and xylose degradation
AMIR_RS28190	PWY-7003	glycerol degradation to butanol
AMIR_RS28190	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AMIR_RS28190	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS28275	PWY-5958	acridone alkaloid biosynthesis
AMIR_RS28275	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AMIR_RS28275	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AMIR_RS28335	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS28335	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS28335	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS28390	PWY-5316	nicotine biosynthesis
AMIR_RS28390	PWY-5381	pyridine nucleotide cycling (plants)
AMIR_RS28390	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AMIR_RS28390	PWY-7342	superpathway of nicotine biosynthesis
AMIR_RS28395	PWY-5316	nicotine biosynthesis
AMIR_RS28395	PWY-7342	superpathway of nicotine biosynthesis
AMIR_RS28400	PWY-5316	nicotine biosynthesis
AMIR_RS28400	PWY-7342	superpathway of nicotine biosynthesis
AMIR_RS28435	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AMIR_RS28440	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AMIR_RS28535	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS28555	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS28555	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS28560	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMIR_RS28560	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AMIR_RS28560	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMIR_RS28560	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMIR_RS28585	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS28585	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS28590	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMIR_RS28590	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMIR_RS28590	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMIR_RS28595	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS28595	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS28615	PWY-2201	folate transformations I
AMIR_RS28670	PWY-381	nitrate reduction II (assimilatory)
AMIR_RS28670	PWY-5675	nitrate reduction V (assimilatory)
AMIR_RS28670	PWY-6549	L-glutamine biosynthesis III
AMIR_RS28670	PWY-6963	ammonia assimilation cycle I
AMIR_RS28670	PWY-6964	ammonia assimilation cycle II
AMIR_RS28695	PWY-5686	UMP biosynthesis
AMIR_RS28735	PWY-5269	cardiolipin biosynthesis II
AMIR_RS28735	PWY-5668	cardiolipin biosynthesis I
AMIR_RS28755	PWY-6803	phosphatidylcholine acyl editing
AMIR_RS28755	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AMIR_RS28755	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AMIR_RS28755	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AMIR_RS28775	PWY-2941	L-lysine biosynthesis II
AMIR_RS28775	PWY-2942	L-lysine biosynthesis III
AMIR_RS28775	PWY-5097	L-lysine biosynthesis VI
AMIR_RS28795	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS28795	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AMIR_RS28795	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS28795	PWY-6936	seleno-amino acid biosynthesis
AMIR_RS28795	PWY-702	L-methionine biosynthesis II
AMIR_RS28845	PWY-2941	L-lysine biosynthesis II
AMIR_RS28845	PWY-2942	L-lysine biosynthesis III
AMIR_RS28845	PWY-5097	L-lysine biosynthesis VI
AMIR_RS28875	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AMIR_RS28875	PWY-6167	flavin biosynthesis II (archaea)
AMIR_RS28875	PWY-6168	flavin biosynthesis III (fungi)
AMIR_RS29005	PWY-5194	siroheme biosynthesis
AMIR_RS29005	PWY-5441	S-methyl-L-methionine cycle
AMIR_RS29005	PWY-702	L-methionine biosynthesis II
AMIR_RS29005	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS29015	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS29025	PWY-5194	siroheme biosynthesis
AMIR_RS29025	PWY-5441	S-methyl-L-methionine cycle
AMIR_RS29025	PWY-702	L-methionine biosynthesis II
AMIR_RS29025	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS29035	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AMIR_RS29035	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMIR_RS29035	PWY-6268	adenosylcobalamin salvage from cobalamin
AMIR_RS29035	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMIR_RS29125	PWY-6421	arsenate detoxification III (mycothiol)
AMIR_RS29185	PWY-7294	xylose degradation IV
AMIR_RS29185	PWY-7295	L-arabinose degradation IV
AMIR_RS29185	PWY-7560	methylerythritol phosphate pathway II
AMIR_RS29245	PWY-2201	folate transformations I
AMIR_RS29270	PWY-5667	CDP-diacylglycerol biosynthesis I
AMIR_RS29270	PWY-5981	CDP-diacylglycerol biosynthesis III
AMIR_RS29350	PWY-6829	tRNA methylation (yeast)
AMIR_RS29350	PWY-7285	methylwyosine biosynthesis
AMIR_RS29350	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AMIR_RS29415	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
AMIR_RS29420	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
AMIR_RS29420	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AMIR_RS29425	PWY-5691	urate degradation to allantoin I
AMIR_RS29425	PWY-7394	urate degradation to allantoin II
AMIR_RS29430	PWY-5691	urate degradation to allantoin I
AMIR_RS29445	PWY-6728	methylaspartate cycle
AMIR_RS29445	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS29445	PWY-7118	chitin degradation to ethanol
AMIR_RS29445	PWY-7294	xylose degradation IV
AMIR_RS29445	PWY-7295	L-arabinose degradation IV
AMIR_RS29580	PWY-6825	phosphatidylcholine biosynthesis V
AMIR_RS29600	PWY-5750	itaconate biosynthesis
AMIR_RS29600	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS29600	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AMIR_RS29660	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AMIR_RS29660	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AMIR_RS29660	PWY-6896	thiamin salvage I
AMIR_RS29660	PWY-6897	thiamin salvage II
AMIR_RS29675	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS29675	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS29680	PWY-5331	taurine biosynthesis
AMIR_RS29720	PWY-5667	CDP-diacylglycerol biosynthesis I
AMIR_RS29720	PWY-5981	CDP-diacylglycerol biosynthesis III
AMIR_RS29730	PWY-5198	factor 420 biosynthesis
AMIR_RS29790	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMIR_RS29810	PWY-5101	L-isoleucine biosynthesis II
AMIR_RS29810	PWY-6871	3-methylbutanol biosynthesis
AMIR_RS29815	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AMIR_RS29835	PWY-5103	L-isoleucine biosynthesis III
AMIR_RS29835	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMIR_RS29840	PWY-5101	L-isoleucine biosynthesis II
AMIR_RS29840	PWY-5103	L-isoleucine biosynthesis III
AMIR_RS29840	PWY-5104	L-isoleucine biosynthesis IV
AMIR_RS29840	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMIR_RS29840	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMIR_RS29840	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMIR_RS29840	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMIR_RS29845	PWY-5101	L-isoleucine biosynthesis II
AMIR_RS29845	PWY-5103	L-isoleucine biosynthesis III
AMIR_RS29845	PWY-5104	L-isoleucine biosynthesis IV
AMIR_RS29845	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AMIR_RS29845	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AMIR_RS29845	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AMIR_RS29845	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMIR_RS29860	PWY-5101	L-isoleucine biosynthesis II
AMIR_RS29860	PWY-5103	L-isoleucine biosynthesis III
AMIR_RS29860	PWY-5104	L-isoleucine biosynthesis IV
AMIR_RS29860	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AMIR_RS29910	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AMIR_RS29950	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS29950	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AMIR_RS29950	PWY-6936	seleno-amino acid biosynthesis
AMIR_RS29950	PWY-702	L-methionine biosynthesis II
AMIR_RS29970	PWY-6823	molybdenum cofactor biosynthesis
AMIR_RS29970	PWY-6891	thiazole biosynthesis II (Bacillus)
AMIR_RS29970	PWY-6892	thiazole biosynthesis I (E. coli)
AMIR_RS29970	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AMIR_RS30020	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AMIR_RS30020	PWY-622	starch biosynthesis
AMIR_RS30075	PWY-5331	taurine biosynthesis
AMIR_RS30090	PWY-5941	glycogen degradation II (eukaryotic)
AMIR_RS30090	PWY-6731	starch degradation III
AMIR_RS30090	PWY-6737	starch degradation V
AMIR_RS30090	PWY-7238	sucrose biosynthesis II
AMIR_RS30100	PWY-2622	trehalose biosynthesis IV
AMIR_RS30110	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AMIR_RS30110	PWY-622	starch biosynthesis
AMIR_RS30260	PWY-5741	ethylmalonyl-CoA pathway
AMIR_RS30260	PWY-5743	3-hydroxypropanoate cycle
AMIR_RS30260	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS30260	PWY-6728	methylaspartate cycle
AMIR_RS30260	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS30395	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS30395	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS30400	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
AMIR_RS30400	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AMIR_RS30400	PWY-6268	adenosylcobalamin salvage from cobalamin
AMIR_RS30400	PWY-6269	adenosylcobalamin salvage from cobinamide II
AMIR_RS30415	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS30425	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS30460	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AMIR_RS30460	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AMIR_RS30460	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AMIR_RS30475	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AMIR_RS30475	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMIR_RS30505	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS30510	PWY-702	L-methionine biosynthesis II
AMIR_RS30525	PWY-2941	L-lysine biosynthesis II
AMIR_RS30525	PWY-2942	L-lysine biosynthesis III
AMIR_RS30525	PWY-5097	L-lysine biosynthesis VI
AMIR_RS30645	PWY-6527	stachyose degradation
AMIR_RS30760	PWY-6902	chitin degradation II
AMIR_RS30885	PWY-4381	fatty acid biosynthesis initiation I
AMIR_RS30885	PWY-5743	3-hydroxypropanoate cycle
AMIR_RS30885	PWY-5744	glyoxylate assimilation
AMIR_RS30885	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS30885	PWY-6679	jadomycin biosynthesis
AMIR_RS30885	PWY-6722	candicidin biosynthesis
AMIR_RS30885	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMIR_RS30895	PWY-6803	phosphatidylcholine acyl editing
AMIR_RS30895	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AMIR_RS30895	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AMIR_RS30895	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AMIR_RS30925	PWY-5344	L-homocysteine biosynthesis
AMIR_RS30930	PWY-5344	L-homocysteine biosynthesis
AMIR_RS30930	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AMIR_RS30995	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AMIR_RS31040	PWY-5028	L-histidine degradation II
AMIR_RS31040	PWY-5030	L-histidine degradation III
AMIR_RS31055	PWY-5028	L-histidine degradation II
AMIR_RS31055	PWY-5030	L-histidine degradation III
AMIR_RS31060	PWY-5028	L-histidine degradation II
AMIR_RS31060	PWY-5030	L-histidine degradation III
AMIR_RS31140	PWY-6854	ethylene biosynthesis III (microbes)
AMIR_RS31215	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AMIR_RS31290	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AMIR_RS31290	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AMIR_RS31290	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS31290	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AMIR_RS31290	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AMIR_RS31290	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AMIR_RS31335	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AMIR_RS31350	PWY-3861	mannitol degradation II
AMIR_RS31350	PWY-3881	mannitol biosynthesis
AMIR_RS31350	PWY-5659	GDP-mannose biosynthesis
AMIR_RS31350	PWY-6992	1,5-anhydrofructose degradation
AMIR_RS31350	PWY-7456	mannan degradation
AMIR_RS31350	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AMIR_RS31350	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AMIR_RS31355	PWY-3801	sucrose degradation II (sucrose synthase)
AMIR_RS31355	PWY-3861	mannitol degradation II
AMIR_RS31355	PWY-3881	mannitol biosynthesis
AMIR_RS31355	PWY-5054	sorbitol biosynthesis I
AMIR_RS31355	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AMIR_RS31355	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AMIR_RS31355	PWY-5659	GDP-mannose biosynthesis
AMIR_RS31355	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS31355	PWY-621	sucrose degradation III (sucrose invertase)
AMIR_RS31355	PWY-622	starch biosynthesis
AMIR_RS31355	PWY-6981	chitin biosynthesis
AMIR_RS31355	PWY-6992	1,5-anhydrofructose degradation
AMIR_RS31355	PWY-7238	sucrose biosynthesis II
AMIR_RS31355	PWY-7347	sucrose biosynthesis III
AMIR_RS31355	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMIR_RS31355	PWY-7456	mannan degradation
AMIR_RS31355	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AMIR_RS31355	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AMIR_RS31365	PWY-6749	CMP-legionaminate biosynthesis I
AMIR_RS31395	PWY-5198	factor 420 biosynthesis
AMIR_RS31400	PWY-5199	factor 420 polyglutamylation
AMIR_RS31465	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMIR_RS31465	PWY-6808	dTDP-D-forosamine biosynthesis
AMIR_RS31465	PWY-6942	dTDP-D-desosamine biosynthesis
AMIR_RS31465	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMIR_RS31465	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMIR_RS31465	PWY-6974	dTDP-L-olivose biosynthesis
AMIR_RS31465	PWY-6976	dTDP-L-mycarose biosynthesis
AMIR_RS31465	PWY-7104	dTDP-L-megosamine biosynthesis
AMIR_RS31465	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMIR_RS31465	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMIR_RS31465	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMIR_RS31465	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMIR_RS31465	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMIR_RS31465	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMIR_RS31465	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMIR_RS31465	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMIR_RS31465	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMIR_RS31465	PWY-7688	AMIR_RS31465
AMIR_RS31550	PWY-6123	inosine-5'-phosphate biosynthesis I
AMIR_RS31550	PWY-7234	inosine-5'-phosphate biosynthesis III
AMIR_RS31670	PWY-4381	fatty acid biosynthesis initiation I
AMIR_RS31670	PWY-5743	3-hydroxypropanoate cycle
AMIR_RS31670	PWY-5744	glyoxylate assimilation
AMIR_RS31670	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS31670	PWY-6679	jadomycin biosynthesis
AMIR_RS31670	PWY-6722	candicidin biosynthesis
AMIR_RS31670	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AMIR_RS31735	PWY-4041	&gamma;-glutamyl cycle
AMIR_RS31770	PWY-4261	glycerol degradation I
AMIR_RS31780	PWY-4261	glycerol degradation I
AMIR_RS31780	PWY-6118	glycerol-3-phosphate shuttle
AMIR_RS31780	PWY-6952	glycerophosphodiester degradation
AMIR_RS31820	PWY-5743	3-hydroxypropanoate cycle
AMIR_RS31820	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AMIR_RS31820	PWY-6728	methylaspartate cycle
AMIR_RS31820	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS31830	PWY-4202	arsenate detoxification I (glutaredoxin)
AMIR_RS31830	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMIR_RS31830	PWY-6608	guanosine nucleotides degradation III
AMIR_RS31830	PWY-6609	adenine and adenosine salvage III
AMIR_RS31830	PWY-6611	adenine and adenosine salvage V
AMIR_RS31830	PWY-6620	guanine and guanosine salvage
AMIR_RS31830	PWY-6627	salinosporamide A biosynthesis
AMIR_RS31830	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AMIR_RS31830	PWY-7179	purine deoxyribonucleosides degradation I
AMIR_RS31830	PWY-7179-1	purine deoxyribonucleosides degradation
AMIR_RS31835	PWY-6749	CMP-legionaminate biosynthesis I
AMIR_RS31870	PWY-7183	pyrimidine nucleobases salvage I
AMIR_RS31950	PWY-6609	adenine and adenosine salvage III
AMIR_RS31950	PWY-6611	adenine and adenosine salvage V
AMIR_RS31950	PWY-7179	purine deoxyribonucleosides degradation I
AMIR_RS31950	PWY-7179-1	purine deoxyribonucleosides degradation
AMIR_RS31965	PWY-7181	pyrimidine deoxyribonucleosides degradation
AMIR_RS32040	PWY-3781	aerobic respiration I (cytochrome c)
AMIR_RS32040	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMIR_RS32040	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMIR_RS32040	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS32040	PWY-6728	methylaspartate cycle
AMIR_RS32040	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS32040	PWY-7254	TCA cycle VII (acetate-producers)
AMIR_RS32040	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMIR_RS32045	PWY-3781	aerobic respiration I (cytochrome c)
AMIR_RS32045	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AMIR_RS32045	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMIR_RS32045	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS32045	PWY-6728	methylaspartate cycle
AMIR_RS32045	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS32045	PWY-7254	TCA cycle VII (acetate-producers)
AMIR_RS32045	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AMIR_RS32080	PWY-5198	factor 420 biosynthesis
AMIR_RS32110	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS32110	PWY-6549	L-glutamine biosynthesis III
AMIR_RS32110	PWY-6728	methylaspartate cycle
AMIR_RS32110	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS32110	PWY-7124	ethylene biosynthesis V (engineered)
AMIR_RS32110	PWY-7254	TCA cycle VII (acetate-producers)
AMIR_RS32110	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AMIR_RS32180	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS32180	PWY-5392	reductive TCA cycle II
AMIR_RS32180	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AMIR_RS32180	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS32180	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS32180	PWY-6728	methylaspartate cycle
AMIR_RS32180	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS32180	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AMIR_RS32180	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS32210	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AMIR_RS32210	PWY-2201	folate transformations I
AMIR_RS32210	PWY-3841	folate transformations II
AMIR_RS32210	PWY-5030	L-histidine degradation III
AMIR_RS32210	PWY-5497	purine nucleobases degradation II (anaerobic)
AMIR_RS32210	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMIR_RS32225	PWY-6123	inosine-5'-phosphate biosynthesis I
AMIR_RS32225	PWY-6124	inosine-5'-phosphate biosynthesis II
AMIR_RS32225	PWY-7234	inosine-5'-phosphate biosynthesis III
AMIR_RS32230	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMIR_RS32230	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AMIR_RS32245	PWY-5392	reductive TCA cycle II
AMIR_RS32245	PWY-5537	pyruvate fermentation to acetate V
AMIR_RS32245	PWY-5538	pyruvate fermentation to acetate VI
AMIR_RS32245	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS32245	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS32245	PWY-6728	methylaspartate cycle
AMIR_RS32245	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS32245	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS32250	PWY-5392	reductive TCA cycle II
AMIR_RS32250	PWY-5537	pyruvate fermentation to acetate V
AMIR_RS32250	PWY-5538	pyruvate fermentation to acetate VI
AMIR_RS32250	PWY-5690	TCA cycle II (plants and fungi)
AMIR_RS32250	PWY-5913	TCA cycle VI (obligate autotrophs)
AMIR_RS32250	PWY-6728	methylaspartate cycle
AMIR_RS32250	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS32250	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AMIR_RS32275	PWY-3461	L-tyrosine biosynthesis II
AMIR_RS32275	PWY-3462	L-phenylalanine biosynthesis II
AMIR_RS32275	PWY-6120	L-tyrosine biosynthesis III
AMIR_RS32275	PWY-6627	salinosporamide A biosynthesis
AMIR_RS32275	PWY-7626	bacilysin biosynthesis
AMIR_RS32350	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS32380	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AMIR_RS32380	PWY-6596	adenosine nucleotides degradation I
AMIR_RS32380	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS32435	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
AMIR_RS32435	PWY-5368	dimorphecolate biosynthesis
AMIR_RS32435	PWY-5995	linoleate biosynthesis I (plants)
AMIR_RS32435	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
AMIR_RS32435	PWY-6803	phosphatidylcholine acyl editing
AMIR_RS32435	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
AMIR_RS32435	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AMIR_RS32435	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AMIR_RS32435	PWY-7470	phosphatidylcholine biosynthesis VII
AMIR_RS32435	PWY-7618	ricinoleate biosynthesis
AMIR_RS32445	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
AMIR_RS32445	PWY-5368	dimorphecolate biosynthesis
AMIR_RS32445	PWY-5995	linoleate biosynthesis I (plants)
AMIR_RS32445	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
AMIR_RS32445	PWY-6803	phosphatidylcholine acyl editing
AMIR_RS32445	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
AMIR_RS32445	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AMIR_RS32445	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AMIR_RS32445	PWY-7470	phosphatidylcholine biosynthesis VII
AMIR_RS32445	PWY-7618	ricinoleate biosynthesis
AMIR_RS32480	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS32485	PWY-6938	NADH repair
AMIR_RS32490	PWY-6749	CMP-legionaminate biosynthesis I
AMIR_RS32495	PWY-5098	chlorophyll <i>a</i> degradation I
AMIR_RS32495	PWY-6927	chlorophyll <i>a</i> degradation II
AMIR_RS32495	PWY-7164	chlorophyll <i>a</i> degradation III
AMIR_RS32515	PWY-6749	CMP-legionaminate biosynthesis I
AMIR_RS32655	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS32970	PWY-3221	dTDP-L-rhamnose biosynthesis II
AMIR_RS32970	PWY-6808	dTDP-D-forosamine biosynthesis
AMIR_RS32970	PWY-6942	dTDP-D-desosamine biosynthesis
AMIR_RS32970	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AMIR_RS32970	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AMIR_RS32970	PWY-6974	dTDP-L-olivose biosynthesis
AMIR_RS32970	PWY-6976	dTDP-L-mycarose biosynthesis
AMIR_RS32970	PWY-7104	dTDP-L-megosamine biosynthesis
AMIR_RS32970	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AMIR_RS32970	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AMIR_RS32970	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AMIR_RS32970	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AMIR_RS32970	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AMIR_RS32970	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AMIR_RS32970	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AMIR_RS32970	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AMIR_RS32970	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AMIR_RS32970	PWY-7688	AMIR_RS32970
AMIR_RS33000	PWY-4981	L-proline biosynthesis II (from arginine)
AMIR_RS33015	PWY-5392	reductive TCA cycle II
AMIR_RS33015	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AMIR_RS33115	PWY-5839	menaquinol-7 biosynthesis
AMIR_RS33115	PWY-5844	menaquinol-9 biosynthesis
AMIR_RS33115	PWY-5849	menaquinol-6 biosynthesis
AMIR_RS33115	PWY-5890	menaquinol-10 biosynthesis
AMIR_RS33115	PWY-5891	menaquinol-11 biosynthesis
AMIR_RS33115	PWY-5892	menaquinol-12 biosynthesis
AMIR_RS33115	PWY-5895	menaquinol-13 biosynthesis
AMIR_RS33150	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AMIR_RS33160	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AMIR_RS33160	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AMIR_RS33160	PWY-6406	salicylate biosynthesis I
AMIR_RS33180	PWY-5839	menaquinol-7 biosynthesis
AMIR_RS33180	PWY-5851	demethylmenaquinol-9 biosynthesis
AMIR_RS33180	PWY-5852	demethylmenaquinol-8 biosynthesis I
AMIR_RS33180	PWY-5853	demethylmenaquinol-6 biosynthesis I
AMIR_RS33180	PWY-5890	menaquinol-10 biosynthesis
AMIR_RS33180	PWY-5891	menaquinol-11 biosynthesis
AMIR_RS33180	PWY-5892	menaquinol-12 biosynthesis
AMIR_RS33180	PWY-5895	menaquinol-13 biosynthesis
AMIR_RS33195	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AMIR_RS33200	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AMIR_RS33285	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMIR_RS33325	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMIR_RS33325	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMIR_RS33330	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMIR_RS33330	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMIR_RS33330	PWY-5194	siroheme biosynthesis
AMIR_RS33330	PWY-5441	S-methyl-L-methionine cycle
AMIR_RS33330	PWY-702	L-methionine biosynthesis II
AMIR_RS33330	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AMIR_RS33335	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMIR_RS33335	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AMIR_RS33340	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AMIR_RS33405	PWY-3341	L-proline biosynthesis III
AMIR_RS33405	PWY-4981	L-proline biosynthesis II (from arginine)
AMIR_RS33405	PWY-6344	L-ornithine degradation II (Stickland reaction)
AMIR_RS33455	PWY-1622	formaldehyde assimilation I (serine pathway)
AMIR_RS33455	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS33475	PWY-5941	glycogen degradation II (eukaryotic)
AMIR_RS33475	PWY-6724	starch degradation II
AMIR_RS33475	PWY-6737	starch degradation V
AMIR_RS33475	PWY-7238	sucrose biosynthesis II
AMIR_RS33495	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS33495	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AMIR_RS33515	PWY-2201	folate transformations I
AMIR_RS33515	PWY-5497	purine nucleobases degradation II (anaerobic)
AMIR_RS33845	PWY-5350	thiosulfate disproportionation III (rhodanese)
AMIR_RS33925	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AMIR_RS33980	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMIR_RS33980	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMIR_RS33980	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMIR_RS33985	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMIR_RS33985	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMIR_RS33985	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMIR_RS33985	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS34075	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMIR_RS34075	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMIR_RS34075	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMIR_RS34080	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMIR_RS34080	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMIR_RS34080	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMIR_RS34085	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMIR_RS34085	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMIR_RS34085	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMIR_RS34110	PWY-6123	inosine-5'-phosphate biosynthesis I
AMIR_RS34110	PWY-6124	inosine-5'-phosphate biosynthesis II
AMIR_RS34110	PWY-7234	inosine-5'-phosphate biosynthesis III
AMIR_RS34135	PWY-6123	inosine-5'-phosphate biosynthesis I
AMIR_RS34135	PWY-6124	inosine-5'-phosphate biosynthesis II
AMIR_RS34135	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS34135	PWY-7234	inosine-5'-phosphate biosynthesis III
AMIR_RS34210	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AMIR_RS34210	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AMIR_RS34210	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AMIR_RS34235	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AMIR_RS34270	PWY-1042	glycolysis IV (plant cytosol)
AMIR_RS34270	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AMIR_RS34270	PWY-5484	glycolysis II (from fructose 6-phosphate)
AMIR_RS34270	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AMIR_RS34270	PWY-7385	1,3-propanediol biosynthesis (engineered)
AMIR_RS34285	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AMIR_RS34305	PWY-6906	chitin derivatives degradation
AMIR_RS34305	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AMIR_RS34305	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AMIR_RS34365	PWY-5686	UMP biosynthesis
AMIR_RS34480	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AMIR_RS34655	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AMIR_RS34790	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AMIR_RS34790	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AMIR_RS34835	PWY-2301	<i>myo</i>-inositol biosynthesis
AMIR_RS34835	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
AMIR_RS34835	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
AMIR_RS34835	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
AMIR_RS34835	PWY-6664	di-myo-inositol phosphate biosynthesis
AMIR_RS34995	PWY-5515	L-arabinose degradation II
AMIR_RS34995	PWY-5525	D-glucuronate degradation I
AMIR_RS34995	PWY-7378	aminopropanol phosphate biosynthesis II
AMIR_RS35135	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AMIR_RS35135	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
