JH254_RS20625 NONE
JH254_RS21375    2968 ..    2982 +  -7.2  -4.07687   GCCGTACAACAAGGA               CCAAAT AAA ATTTGG               TTTTCGCCAAGAAGT  71 146
JH254_RS21270 NONE
JH254_RS21275    5266 ..    5282 +  -3.7  -4.09685   GCCTTCTCGAGTCAA              GCCTT ATTTTCA AAGGC              TTTTCGAGGCTACCG  61 152
JH254_RS21390 NONE
        rapA    8557 ..    8572 +  -8.2  -2.71924   GTAACCCATAACTGA              TGGGGG CTTG CCCCCG               CTTTGACCCAAGATG  56 98
        rluA    9285 ..    9306 + -15.9  -5.28176   CCCAATAAAAAGAAA           GCCCCCATC GAGA GATGGGGGC            TTTTTTATCGCTCAG 100 57
JH254_RS20695   13842 ..   13855 +  -2.3  -4.28254   ACAGGATCAGTACGT               CCTGG CCAT CCAGC                TTTTCGGTCTTCACG  62 84
JH254_RS00055 NONE
JH254_RS21325 NONE
JH254_RS21330   16410 ..   16426 +  -9.5  -3.78953   AATGACCACAAGAAA              TTTGAGG TTG CCTCAAA              TTTAGTGATCCAGGT  75 429
        aspA   18066 ..   18088 +   -17   -3.6215   GTATAAGCGAGCAGA           TGGGCCGGGG TTA TCCCGGCCCA           TTTAAAGTCAATTCC 100 35
JH254_RS00070   19530 ..   19545 + -11.8  -5.60993   CCATCCCATGCAAAA              CGGCCC GAAC GGGCCG               TTTTTTTATGCCCGG 100 49
JH254_RS20760   23406 ..   23426 + -10.3  -2.77013   CTTGCTGTCGAAGTC            GCCGCCCAG GGT CAGGGTGGC            ATTGTTCGGCCCGTA  66 170
JH254_RS20765 NONE
JH254_RS20770   24545 ..   24555 +  -8.2  -3.14931   AGCCGAGCCCCATCT                 CGGC GAT GCCG                 TTCATCCAGGCTGGC  60 134
JH254_RS20775 NONE
JH254_RS00095 NONE
        sul1 NONE
JH254_RS20785   26412 ..   26427 +  -6.8  -2.88861   CTATGCTGGCTATCT              GCTCGT CGAA ACGGGC               TATCTCCCGCTCGTG  51 6
JH254_RS00105 NONE
JH254_RS00110 NONE
JH254_RS20790   28093 ..   28103 +  -6.8  -2.96274   CCAGATGCTCGAAGC                 GGTC GAA GACC                 TGTCCTTCTGCCAGC  50 416
JH254_RS00135   31211 ..   31236 + -10.5   -3.0806   CTAACGCCATCTTGA         GGCTCATTGAC CCGA GTTGATGAGCC          TCTTCGCACTTTCGC  68 37
JH254_RS00140   32302 ..   32316 +  -8.5  -3.73224   ATGCACCACGGATGA               GGGGC CACTT GCCCC               TTTCCTGGCGCCTGA  69 179
JH254_RS00170   39039 ..   39065 + -16.6  -4.70659   GGACACCAGAACGCA         AGAAGGCCGGTC AAT GACCGGCCTTCC         TTTTTCCATCTCGAC 100 41
JH254_RS00215   47342 ..   47365 + -16.8  -2.93252   CGGGGACAAAAAGCA          CGATGCCGAC ATTA GTCGGCATCG           TCGTTATTACAGGAT  87 47
        rpsT   55285 ..   55300 +  -7.5  -5.67283   TGAAAGCTGAAAAAA              CCGGC CTTAGT GCCGG               TTTTTTATTTGGGTT 100 55
        mutH   64355 ..   64365 +    -4  -2.86449   TGCCCCTTTGATCTG                 TGTT ATC AACA                 TCCTTGTCATAGAGT  44 30
JH254_RS00300   64793 ..   64811 +   -16  -4.20531   CACGGATACAAAAAA             GGCTCGCC ATT GGCGAGCC             TTTTCACTACCTGTC 100 55
        ccsA NONE
JH254_RS00335   70786 ..   70802 + -13.7  -5.30616   CGAGGATTGAAAAAA              GGCTGCC AAT GGCAGCC              TTTTTGTTTCACTCG 100 31
        hmpA   72609 ..   72640 + -18.2  -2.62184   GACCGGGAAAATGCA      CAAGGCCCAC-AAGC ACA GCTTCGTGGGCCTTG      TAATATCAAAGCGGG  86 51
        argR   78415 ..   78447 + -14.4  -4.09685   GCCTTGTGCGATCCG     CACAAAAATCCCGGC CTTG GCCGGGATTTTT-TG      TTTTGAACGGTCGGC 100 48
        arfB NONE
JH254_RS00415   85070 ..   85086 +    -3  -3.63627   TGACGGGCAACACCC              CAATCA CATAC TGGTTG              TTTGCCATCTGACAG  51 188
JH254_RS00455 NONE
JH254_RS00460   93941 ..   93959 +   -16  -4.41494   CTTGCCGCCGCCCAA             GCCGGAGC CCA GCTCCGGC             TTTTCATTGCGCGTC 100 73
JH254_RS00465   94914 ..   94943 + -13.5  -2.53263   TTCACCGGGCAAAAA       AATGCCCCGCCCC CGTG GGGGCAGGGCATC        TGCATTCACCCTGCA  75 54
JH254_RS21140 NONE
JH254_RS21145 NONE
JH254_RS21150 NONE
JH254_RS21155 NONE
        tapT NONE
JH254_RS21160 NONE
JH254_RS21165 NONE
JH254_RS00500 NONE
JH254_RS21170 NONE
        yaaA NONE
JH254_RS21175  101599 ..  101612 +  -2.3  -4.61231   CGAAGATGATGGCCT               TCTGG GTCT CCGGG                TTTTTCAGGATGTGC  68 107
JH254_RS00515 NONE
JH254_RS21185 NONE
        brnQ  104703 ..  104724 + -15.9   -5.5112   CTTGACCAAATGAAA           GAGGCCAGC ATTT GCTGGCCTC            TTTTTTGTTGGTGCA 100 49
        dusA  107010 ..  107035 +  -3.9  -2.63631   CCAAGGTGCCGGAGT         TCGCGCCGGCCG ACG CGG-TGGAGTGA         TCATGTACCGCTTCA  42 0
JH254_RS00545  107214 ..  107233 + -16.4  -5.24129   CCCGAACAAGAAAAA            GCCGGCGC CCCT GCGCCGGC             TTTTTTGTCACCACG 100 52
JH254_RS00560  108894 ..  108921 +  -4.2  -3.14468   TCCCTCAGCCATCAG        CAGG-TCTGATAT TCA ATATCGGAGCCAG        TTCAATATCCTGGCG  47 17
JH254_RS00565  109413 ..  109430 + -11.3  -4.81685   GGGCAGAAAAACAAA             GGAGCGT TCAT ACGCTCC              TTTTTCATGGTTGGT 100 47
JH254_RS21240 NONE
JH254_RS00575  113313 ..  113330 + -12.7   -5.4251   GGAGACAACAAAAAA             CGGGCAC GCAA GTGCCCG              TTTTTTGTCTATCAG 100 53
JH254_RS00590 NONE
JH254_RS00595  118418 ..  118437 + -16.4  -5.60993   CGCAAAAATGCAAAA            CGGCGGCC CGAG GGCCGCCG             TTTTTTTATGCGCGA 100 49
        tppF  126405 ..  126424 + -12.1   -3.3514   CTTCATCATGGCGTA            CCGGCGC GCAGCA GCGCCGG             TTCTCCGGTGTGAGT  72 71
JH254_RS00660  131362 ..  131381 + -13.6  -4.46926   CCCGGAAAAACAAAA            GGCCATCC GCGA GGATGGCC             TTTTGTCATGGAATC  95 197
JH254_RS00715  139689 ..  139706 + -12.7  -5.06414   GACGGCAACGAAAAA             GGGCACC CCGA GGTGCCC              TTTTTGTTGACCAGA 100 47
        pepA  143757 ..  143782 + -16.3  -3.90291   CGTTACCCTGTATCA         CAAGGAAGAGG CCTG CCTCTTCCTTG          TTTCATTGAGAGAAT 100 79
JH254_RS00735 NONE
JH254_RS00740  147279 ..  147297 + -13.1   -4.8048   AGCGCAACATGACAA             GCCCCCG TTTAT CGGGGGC             TTTTTCATGTCAGGG 100 46
JH254_RS00745 NONE
JH254_RS00750  149454 ..  149473 + -12.8  -5.60993   GTGAGACAGACCACA            GGGTCGCC CACA GGCGGCCC             TTTTTTTATGGAAAA 100 37
        pbpG  150430 ..  150445 +    -9   -5.4505   CACGAAGACATGAAA              GGATGC CGCG GCATCC               TTTTTTATTGCCAGC 100 48
JH254_RS00805  156288 ..  156298 +  -2.4  -3.53012   AAGCGGATCCTGAGC                 GGAC CAT GGCC                 TTTGGCCGCACCAGC  47 288
JH254_RS00825  158863 ..  158886 + -16.8  -2.74122   TCTCCCCGTCTCTCC          CATCCCCGCA TCCG TGCGGGGATG           CTATTTCTCCTCCCC  86 50
        mutS  161701 ..  161720 + -13.6  -4.05788   AACAGGCATGAAAAA            GGGGAACC GCGA GGTTCCCC             TTTCGTTTGACCGAA  95 54
JH254_RS00845  164674 ..  164684 +  -4.6  -3.72695   CCTCGTCTACACCAG                 GTCC TAC GGGC                 TTTGCTACAGCAACT  57 178
        folB  167449 ..  167461 +  -3.4  -2.93382   CTGCGAGCGCCCGCT                GATG ACCCG CATC                TATATCAGTCTGGGA  42 24
        folK  167964 ..  167987 + -16.8  -3.18582   AGCATCACTGAACGA          CAAGGGCACC CTCG GGTGCCCTTG           TTGATGACTCCGCTG  88 30
JH254_RS00890  169013 ..  169049 +  -7.9  -3.14132   CGTCTTGGTCAGCAT    GGCGCCGATCACCGTGG GGA TCATGGTCATCCCCGCC    TTGCTCGGGGAGAAG  56 479
JH254_RS00915  174356 ..  174378 +  -4.7  -3.05022   GCCCGGCCTAGCCCT           GGGCGGTGC GCCCG GCAGCGACC           TGTATCTCTCCCGCC  46 30
JH254_RS00935  183496 ..  183511 + -11.8  -3.71848   TCCTGACCCACACCA              GGGCGC TTCG GCGCCC               TTCTTCATGACCACG  83 56
JH254_RS00940  183823 ..  183840 + -12.7  -4.77165   GACAGACAACAAAAA             GCCGCTC CATG GAGCGGC              TTTTCTTATGAAACG 100 57
JH254_RS00970 NONE
        nadC  193343 ..  193357 + -12.8  -4.99043   TCGAAACTTGCAAAA               GGCGCC ATC GGCGCC               TTTTCTTTATGCAGG 100 81
JH254_RS00980 NONE
        tapB  195789 ..  195805 +  -5.1  -3.61398   GGGTGAGGCTGCTGC              CATCACC CCC GATGATG              TTCTTCAAGCCAAGA  56 67
JH254_RS00990  197133 ..  197156 + -11.7  -2.75022   GCCCCTTCGGCAAGA          GGGCC-GGCC AGTTC GGCCTGGCCC          CTTCTCTCTCAACGC  69 41
JH254_RS00995 NONE
        coaE NONE
        zapD NONE
        yacG  199678 ..  199691 +  -9.5  -4.91873   TTCACGATCAAAAAA               GGGCC CTCA GGCCC                TTTTTCGTTGGTATC 100 45
JH254_RS01120 NONE
JH254_RS01125 NONE
JH254_RS01130 NONE
        yraP  227326 ..  227343 + -12.7  -5.68438   TGGCAGGAAAAAAAA             CGCAGCC TTCA GGCTGCG              TTTTTTATTTGATGA 100 46
JH254_RS01180  234104 ..  234114 +  -5.4  -3.49687   GTCAGACCTTGACGA                 TTGC ACT GCAA                 CTTTTTCTGGGAGCT  54 72
JH254_RS01185  235505 ..  235530 + -16.1  -4.88067   TCCGTTAAGCCCCTC         ACACCCGCGGC AACC GCCGCGGGTGA          TTTTTATCCATCGAT 100 33
        degS  236731 ..  236746 + -11.8   -4.7254   AGGCGGATCCTCGCA              GGGCCC GAGA GGGCCC               TTTTTCGTGCCCGCT 100 42
JH254_RS01195 NONE
JH254_RS01200 NONE
JH254_RS01205 NONE
JH254_RS01210 NONE
JH254_RS01215 NONE
JH254_RS01220 NONE
JH254_RS01225 NONE
JH254_RS01230  242639 ..  242672 +  -8.7  -2.82895   TGGCATAACAATCCC     ACAGGCACCGGTCCG ATCA CTGGGCGGTGCCTGG      CTTGTTAATGACCCC  60 33
JH254_RS01235  245031 ..  245055 + -12.8  -3.21593   GAATGCGCTGGCCAG          CCGCTCGGCG ATGAA CACCGAGCGG          TGTTGTCCGCCGGTA  73 415
        mlaF  252455 ..  252470 +    -4   -2.9155   CATTTTCCGGCAGGC              GA-CCTG CTA CAGGATC              TGTGATGTTGACAAG  44 5
        mlaE NONE
        mlaD NONE
        mlaC  254374 ..  254404 +  -6.1  -2.52464   GAACACAATGCCAAG       CCGCTGGTGATCA AGTCA TGATCCTGAGCGG       TGACTTGCAGGCCCC  48 5
JH254_RS01310 NONE
        ibaG NONE
        murA  256227 ..  256251 + -22.9   -4.7497   AGCCGACGATAAAAA          GGCCCCCTCGC AAA GCGAGGGGGCC          TTTTTCATGACTCCG 100 56
JH254_RS01335  259066 ..  259091 + -20.5  -4.33928   CTGAACTCAAAAAAA         CGGCGCGCAGA GCAA TCTGCGCGCCG          TTTCTATTTCCCCTC 100 52
JH254_RS01350  263140 ..  263163 + -16.8  -3.78934   CTGTTTACCGACCCC          TCTGGCCAGC GTTC GCTGGCCAGA           TTGTTATGAAGCACC 100 47
JH254_RS01355  263882 ..  263926 +  -2.6  -3.85698   GGTAACAAAGGGTAA CCGGCCGCCG-ATGGGGGTCA CAGT TGGCGACCAGGCGGCTGCAGG TTTATCAGCAGAACC  51 103
JH254_RS01365  264813 ..  264827 +  -9.2   -2.8844   CAACAAGCCCCTCAG               CCGCGT CAC GCGCGG               TCTGGTGTGATCTCC  60 1
JH254_RS01380  266876 ..  266898 + -19.2  -3.19522   CGCAGACAAATGAAA           GAGGGCGACC CAG GGTCGCCCTC           TTGCCTGTTCACTGC  95 54
JH254_RS01395 NONE
JH254_RS01400 NONE
JH254_RS01405  270875 ..  270895 +  -5.3  -3.41988   TATCATAAAAGCAAA            GACAGGAGC ATT GCTCCTCCC            TCTTATTCGCTGAGG  54 102
JH254_RS01415  274134 ..  274151 +  -4.9  -2.60212   GCGCGCCGCCTTCCC             CGATCGCA ACA TGC-ATCG             ATTCTGACATGCTAA  43 1
JH254_RS01420  275912 ..  275930 + -14.6  -4.77036   GGCAGACAACAGAAA             GGGCTCCA TGA TGGAGCCC             TTTTTCATGGTGGCG 100 45
JH254_RS01435 NONE
JH254_RS01440 NONE
JH254_RS01445  279660 ..  279675 + -11.8  -5.53991   CTCCTGTCCACAAGA              GGCGCC TTCG GGCGCC               TTTTTTTGATGGGTC 100 57
JH254_RS01460  282381 ..  282399 +   -16  -4.22652   CAACGGAAAAGAAAG             CGCCCCGA TCA TCGGGGCG             TTTTGCGTGGTGTCG 100 101
        sgrR NONE
JH254_RS01485 NONE
JH254_RS01490  287803 ..  287822 + -12.1  -4.73388   CAGCGTCAAAGAATG            GGGGCCC ACTTGC GGGCCCC             TTTTTCATGCCGGTT 100 47
JH254_RS01505 NONE
JH254_RS01510  290875 ..  290898 + -18.2  -3.90588   TTTCACCTGATGAAA          GAGACCCGCC TGTT GGCGGGTCTC           TTTCATTGAGGGGTC 100 48
JH254_RS01555  303110 ..  303149 + -22.4  -2.92389   AGGCCGACGCGTTTG  GCAACAAAAAGGGCTCCC GAAC GGGAGCCCTTTTTGTTGA   TATGTCGATGCGTTG 100 40
JH254_RS01565  305710 ..  305730 + -16.9  -2.62184   GCGAATGATATGAAA            CAGGCGCCT GTC AGGCGCCTG            TGGTCTGGCCGGGCG  85 364
JH254_RS01580  308895 ..  308918 + -18.2  -5.40474   CGCGCTGCTCATGAC          GACCCCCTGC CTTG GCAGGGGGTC           TTTTTTTGGGCAGAT 100 51
        zntB NONE
JH254_RS01605  312056 ..  312071 + -10.4  -4.67353   GCCGGAATGAGAAAA              GGCTCC CTCG GGAGCC               TTTTTCGATGGGTGC  93 31
JH254_RS01650  323612 ..  323624 +  -3.3  -3.53012   CCGTGCCCCCTTATA                GTGCG TTT CTCAC                TTTCACAGGAACGCA  48 255
JH254_RS01655  324255 ..  324270 +  -5.4  -4.83169   CATTGGGTGCCATAT              TGGCCT CATG AGGCTA               TTTTTGTGCCGGGCT  76 15
JH254_RS01660  326399 ..  326417 +   -16  -4.72272   GCAGCCAACAAAAAA             GCCCTCGC AGT GCGAGGGC             TTTTTCATGGGGCGC 100 52
        hldE  329095 ..  329110 + -11.8  -5.14965   CGGATAAGCGTAAAA              CCCGGC CAAG GCCGGG               TTTTTTGATGGGGCT 100 34
        nudF  331574 ..  331594 +  -8.3  -2.70932   GGAACACTGTGCAGT            GGGTCCA GCCTTCA TGGACCC            TGATTGAGGGAGCCG  56 85
JH254_RS01685 NONE
        cpdA NONE
JH254_RS01695 NONE
JH254_RS01700  334106 ..  334120 +  -4.9  -3.17571   CATCTGTCGCAGGGG               CGGGG GGATA CCCTG               TTCGATTAACCGGTT  47 2
JH254_RS01705  334710 ..  334723 +  -4.5  -3.15147   CCCTGTCCGTCTCCC               GG-CGG ACC CCGGCC               TCTCTCTTCATTCCA  47 165
JH254_RS01710 NONE
JH254_RS01715 NONE
JH254_RS01720  337857 ..  337884 +  -6.2  -3.53012   GCCTGATCCCGGGCG        GGGAGG-CCGGAG CCC CTCTGGATCACCC        TTTGCGAGCGCCCCA  56 35
        parE  339923 ..  339965 +  -9.6  -2.56271   CGCAAGGGGAGGGGG CCAAGCCTCTCCTCCCCCTC ATG GAGGGGGAGGTTGGGAGGGG GTCTTGTGATGCACC  62 77
        parC  342356 ..  342371 + -11.8  -4.20918   GTAATTAATATAGAA              GGGCGC GAAA GCGCCC               TTTATTAAAATTAAA  90 37
JH254_RS01740 NONE
JH254_RS01745  344018 ..  344034 +  -9.4  -5.31275   TGAATTATTGAAAAA              GGAGCC GGCAA GGCTCC              TTTTTTGTGATGGGC  95 93
JH254_RS01760  345592 ..  345602 +  -6.8  -4.60487   TCGAGCTTCTCCGGC                 GAGG CGT CCTC                 TTTTTGCAACTGCTG  78 193
JH254_RS01785  348761 ..  348784 + -16.8  -3.74077   CCCTCTGATGAAAAA          GAGCCCGGTA GCGA TACCGGGCTC           TTTGCATCTCTGGCA 100 54
JH254_RS01810  353478 ..  353494 + -13.7   -5.5112   GTTGTAGAGAAGAGA              GGGAGCC GCT GGCTCCC              TTTTTTATTGGTGAA 100 46
        pspA NONE
JH254_RS01820 NONE
        pspG  354827 ..  354848 + -10.1  -4.82901   TTTCGTATCCTTCCT           TGGCCACTG CTTG CAGTGGCCC            TTTTTATGGGGGCGA  91 51
JH254_RS01840  357187 ..  357199 +  -4.7  -3.93288   CACCCCGAGCGCCGC                CAGGG CGG CCCAG                TTTACTTCGGTCGGG  60 442
JH254_RS01850  358862 ..  358880 +  -5.8  -2.78935   GCGAGACAGCCTGTC             AGGGCGGC AAA GCCGGCCA             TCTGCTCCGGAGTCT  46 254
        znuA NONE
JH254_RS01870  362463 ..  362489 +  -2.8  -4.15044   ACGGTTGGGATGACC         CATGACGAGGCC ATA GGCATCGATCTG         TTTATTGCACAACGC  61 413
        mepM  365940 ..  365961 + -18.7   -4.4078   CCTCCTGACGAAAAA           GGCCCCGCC AGCT GGCGGGGCC            TTTTCATTGCAGAAC 100 48
JH254_RS01895  367697 ..  367710 +  -8.1  -6.06529   TGCCCATAAAAAAAG               CTCCC GGTC GGGAG                TTTTTTTTATCTCTG 100 54
JH254_RS01900  369239 ..  369286 + -11.1  -2.75826   CCAAGCAGTATTGAC GG-GAGCGCCGACGGCGGGTGC CATCA GTGCCCGCCTCCGGTGCCCTCC TGCTGTCTTCCCATC  69 27
JH254_RS01905  370097 ..  370127 + -22.7  -3.32498   TGCCGACGGCAACGA       CGACAAGGGCGCC TTGAT GGCGCCCTTGTCG       TTGATCTCTCGCCTG 100 48
JH254_RS01915  372410 ..  372433 + -11.6  -5.95166   CGCTCGTGCCATCCC          CGTGGCCGGT CATC GCCGGCCCCG           TTTTTTTTGGTTCAG 100 43
JH254_RS01925  373934 ..  373956 + -11.2  -2.98823   GTCAGGGAAAGGAAC           AGGGGCAGGT ACG GCCTGCCCCC           TCTGTGTCAGCCAGG  70 84
JH254_RS01950  379976 ..  380009 +  -4.3  -2.97925   GAACTATCTGGGCTT     GATGGGCTAGCCCGG CACT CAGGGCAGACCCAAC      TCTCTGGTCTGCCCT  46 16
        manA  381590 ..  381611 + -17.3  -2.50816   AGGCAACCGTTGAGT           CAGGCCGCC TCGG GGCGGCCTG            GTTGATCAGTGGGCC  86 28
JH254_RS01965 NONE
JH254_RS01970 NONE
JH254_RS01975  386251 ..  386262 +  -7.2  -2.57211   GTTCGCCGACGTATC                CCGC AACG GCGG                 CTTCTGAGCCGGCAT  53 7
        chbA NONE
JH254_RS01985  387578 ..  387588 +  -8.2  -3.05384   TGCCGGCTGCACCGT                 GGGG CCG CCCC                 TTGCCTGCGGCGCCC  60 73
JH254_RS01990 NONE
JH254_RS01995  391217 ..  391246 + -15.7   -3.1489   GTGGCGGAATAACAG       TACGGGCCGCATC CCAT GGCGCGGCCCGTA        TTCACTCGTGTTTCA  85 29
JH254_RS02000  391959 ..  391983 +  -7.8  -3.40597   GATGATTTTATTGTC          CGCCACAGAG AATGC CTCGGTGGTG          TATTTCCATCACGAC  61 127
JH254_RS02005 NONE
JH254_RS02010  394353 ..  394370 +  -3.3  -3.76125   CCGCTAGGGCTTGAC             CTTGCCG GAGG CGGCAGC              TTTAGGTTGAGGTCA  53 34
JH254_RS02015  394625 ..  394639 +  -2.8   -4.2711   TTAATTGGTATAAAT               CAGACT AAT ATTCTG               TTTAATTCTTTTTAT  61 49
        ansB  395831 ..  395851 + -15.5  -4.44667   ACCCCGTGAGATGAA            GGGCAGGAT GGG ATCCTGCCC            TTTCTTGTTGCGCCA 100 67
JH254_RS02030  397870 ..  397892 + -10.6  -3.88766   CCCCATAAAAGAAAA           GAGCCGGA CATCTGT TCCGGCTC           TTTGCTGTCTGGCGT  79 52
JH254_RS02050 NONE
JH254_RS02055  401982 ..  402010 + -15.9   -3.3164   CAGAAAACCGCGGAG        CCCGGGAGGAACC CAT GGCCCCTCCCGGG        TTCTGCACATCGATT  87 59
        coxB NONE
        ctaD NONE
JH254_RS02070 NONE
JH254_RS02075  406783 ..  406796 +  -3.8  -3.98378   GACCATGGCATCACA               GACG CTGGTT CGTC                TTGTTGTTCACTCTG  58 305
JH254_RS02085 NONE
JH254_RS02090 NONE
JH254_RS02095 NONE
JH254_RS02100  409991 ..  410016 + -17.7  -4.07568   AGACCTGATGCAAAA         CAAGATGGCCC CTTG GGGCCATCTTG          TTTTCAGGGGGACGG 100 103
JH254_RS02120  413881 ..  413904 + -16.8  -3.56092   CATGAAAACACAAAA          GGCCCGTTAC TCTC GTAACGGGCC           TTTGCAGAATGATGG  95 359
JH254_RS02170  419725 ..  419747 + -12.7  -3.59738   ATCTCGCTTTTGATT           GCCCGGTCA ATTAA TGGCCGGGC           TTTGCCGATATACTC  81 55
JH254_RS02175  421530 ..  421561 +    -5  -4.56597   TCTGGCACATGGCGA      TGCGCCCGCGCTCT GGCT AGAATGGGGGCCCA       TTTTTCACAGACAGA  73 118
JH254_RS02180  422291 ..  422337 + -11.7  -3.44051   GACGCAGCGACACCG TCAGGATGGGCAGTGGCGAG ATTTACTG CTCGCTGCTGCC-ACCCTGA TTGTCGTCATAGCGG  75 140
JH254_RS02190 NONE
        pqiB NONE
JH254_RS02200  426347 ..  426366 +   -15  -4.88918   AAGCATAAAAAAAGA            CGGGAGGC CATG GCCTCCCG             TTTTGTTTGGGGTCG 100 43
JH254_RS02215  429347 ..  429371 + -20.1  -3.06796   GGCGACAGTAAATGA          GAAGGGCGCTC CGG GAGCGCCCTTC          TTGCATGCCATCAGC 100 48
JH254_RS02245  435978 ..  435998 + -18.3  -4.91109   GCGAAGCATAAAAAA            GCCCGGGTC AAT GACCCGGGC            TTTTTGTCGTGCGGC 100 82
JH254_RS02260  439144 ..  439161 + -11.3  -5.25803   TGCAGAGCGCAAAAA             GGTGAGC CCGG GCTCACC              TTTTTTATGGCAGTT 100 52
        exeC NONE
        exeD NONE
        exeE NONE
        exeF  452171 ..  452186 +    -9  -3.02166   TAACAGTTAATCGTT              GATGGC TCAT GCCATC               TCATTTCGTTAGGGA  61 104
        exeG  452678 ..  452699 +  -5.8  -3.02511   ACTGCGCCCCCCCGG           GGCTGCCT GCATGA AGGTGGCC            TCTTCGGCCCGTCAC  51 63
        exeH  453262 ..  453274 +  -6.2  -2.57931   AGTGAGGAGCGCCAG                GCCC GCAGG GGGC                GTTCTAGCGCGTCGC  48 36
        exeI NONE
        exeJ  454372 ..  454395 +  -3.2  -3.04144   TCGTCGTTTTCCCCT          GT-CCGTCA CGGAGGA TGACGGCAC          TATTCGACGTCGCCA  42 41
        exeK  455615 ..  455672 +  -3.1  -3.14211   ATCTCCCGATTGGAC TGCAACCCATGGCTGTGCGCCCGCCCCC TGA GGGGGCGCGGGCATGG-CAGGAGAGACA TTAGTGAGCGAGAGT  43 75
        exeL NONE
        exeM NONE
        exeN  458125 ..  458146 + -17.3  -2.96274   TGCCCATGGTTTGAA           CCACCCCGC CCCG GCGGGGTGG            TGTCGTTATGGGGGC  89 47
        tyrS NONE
JH254_RS02380  462547 ..  462565 + -11.7  -3.39505   GAGCTTATGTGACAA             GGCCCTC GTGAA GAGGGCC             TTGTGCGTGTCAGGT  75 77
        nudE  464004 ..  464014 +  -5.4  -3.57144   AGGGAAATTAGCCCG                 CAGA GGG TCTG                 TTTGGCAATCAGAGG  56 30
        cysQ  464880 ..  464913 + -24.1  -3.29649   CAATCTCGCAGGGAA     TGCAATCAGGCGACC ACAG GGTCGCCTGATTGCA      TTGGTGTGATCCACT 100 49
JH254_RS02400  466557 ..  466589 + -22.1  -4.04719   GCCGTCAGCATCAAA      CAAGAGAGGCGACCC CGG GGGGCGCCTCTCTTG      TTTCTGCTCTCTGGT 100 46
        metB NONE
JH254_RS02425  472037 ..  472062 + -19.1  -3.23393   GACACGATGCAATGA         GAAGAGGCGCC CCAG GGCGCCTCTTC          TGTTATCGGGTGGCG  95 49
JH254_RS02440  474236 ..  474284 +  -6.6  -3.14344   AGGCTGCGGAGTGTC GCACCTCCTCAATCTCGTCCCAC ACCT GTTGGCTGAGATCGGGGTGG-GC TTGATGGAAGGGGTG  54 93
JH254_RS02460 NONE
JH254_RS02465  478596 ..  478624 +  -6.6  -4.10453   ACGTTGCAATGAGGG        GGGCGATGCC TCCCTGTCC GGCGCCGCCC        TTTTCAACGACTTTG  68 41
JH254_RS02470  479434 ..  479455 + -15.9  -5.10665   GACATCCAGACGCAA           GAGGCGCCA GTCA TGGCGCCTC            TTTTGTTTGTTCAGT 100 122
JH254_RS02480  481622 ..  481644 + -19.2  -4.33819   TATCGCGAAATAAAA           CAGGGCGCCA TCA TGGCGCCCTG           TTTGTTGTGGATGCT 100 51
        argC  487006 ..  487016 +  -8.2  -2.93381   GTTTGGTTTTGAACC                 GGCC ACC GGCC                 TGATTTAACGCTTTA  58 7
        argB  487852 ..  487862 +  -5.4  -3.28924   GGAAAAGGACAATCC                 GATG CAA CATC                 TTCTGAAAGACAGTG  52 50
JH254_RS02505 NONE
JH254_RS02510  490087 ..  490105 +   -16  -4.07568   ATCACCCGTTGATTC             GAGGGGGC ATG GCCCCCTC             TTTTACAGGCAGAGA 100 50
        argH  491686 ..  491705 + -13.6  -5.96219   AACAAGAAGGCAGAA            CGGCAACC CCAG GGTTGCCG             TTTTTTTTATGGGTA 100 61
JH254_RS02525 NONE
JH254_RS02530 NONE
JH254_RS02535  494043 ..  494060 +  -2.7  -3.50715   TTAAAGTGATATTTG             CATCGTG AACA TATGATG              TTATATCGCGCTTGT  48 90
JH254_RS02540  494881 ..  494900 + -13.6  -4.81083   TCGGCCCGACAAAAA            CGGCAACC GTCT GGTTGCCG             TTTTTCATGGTTCCA 100 57
JH254_RS02595  504978 ..  504993 + -11.8   -4.4078   CATCTACTGACATCA              GGGCCC TGCG GGGCCC               TTTTCATTGCCGCGC  91 63
JH254_RS02600  507311 ..  507331 +   -14  -3.86202   CGTTGTTGTCATCAA            GAGCCCGC CCCGT GCGGGCTC            TTTGCTGTGGTGCCG  91 50
JH254_RS02605  508188 ..  508216 + -15.4  -3.78934   AAGCCTCTCGTCAAC       G-AGAAGGGGCGC CATG GCGCCCCTTCTGC        TTATTCTCCCAGCAG  95 53
JH254_RS02625 NONE
JH254_RS02630  514662 ..  514678 + -11.5  -5.20216   GTCAACAGAATGAAA              GGTCGCC AGA GGCGGCC              TTTTTTCATGGTGTG 100 52
        nudC NONE
        hemE  516810 ..  516827 + -14.1   -4.3586   AAACAGCGTGATGAA             CGGGGCC TGCG GGCCCCG              TTTTGCTGTCCGTGA 100 48
JH254_RS02645 NONE
         epd NONE
JH254_RS02655  520166 ..  520195 + -15.7   -4.0162   AAAGCCTAATTGACC       CGGGACGGGGGGC AAAA GCCTCCCGTTTCG        TTTATCATGTGGCCG 100 32
        fbaA  521381 ..  521398 + -10.5  -4.41177   TTGATTGCATGAAAA             GGCGCTC TTCG GGGCGCC              TTTTGCATTTCTGTG  88 52
JH254_RS02665  523133 ..  523146 +  -3.7  -4.25458   CCCCACTTTCTGTCA               GGGCG GGAT CGCAC                TTTGTTAATGAAATT  63 349
JH254_RS02670  524400 ..  524417 + -12.7  -4.87328   AACCAATAAAACAAA             GGCGACC ATCC GGTCGCC              TTTTCTATTTCTATC 100 111
JH254_RS02690 NONE
        rssA  533903 ..  533916 +  -9.5  -5.64421   TAAAAGACAAAAAGA               GCGCC AATA GGCGC                TTTTTTGTTTCGGGT 100 54
JH254_RS02710  536704 ..  536728 +  -9.4  -3.13522   ATGGGCATAAAGTGC         GCC-ACGTCAT CGGA ATGACGTCGGC          TGTTCGTGGCGGAGT  63 120
        ompA  537940 ..  537959 + -13.6  -4.41956   AGGTAACGTAAAAAA            GGGGATGC CACG GCATCCCC             TTTTGCTGTCTCTCT  95 54
        ompA  539350 ..  539366 + -10.8  -5.14563   CACCTGTTAAAAAAA              GGGGCC ATTCC GGCCCC              TTTTTTAATGCCCGG 100 50
JH254_RS02725  540636 ..  540653 + -11.3  -3.41839   GCCGTGCACAAAAAA             GGGATGC CGAG GCATCCC              TTCTGCGTGTCTGTC  75 58
JH254_RS02740  544881 ..  544899 +  -5.8  -3.31144   AATCAGAGGCGGGGT             GCGCCGGC CAT GCCGACCC             TTGTGCCCCTGCCCA  54 121
JH254_RS02745  545204 ..  545229 + -20.5  -4.83615   CAGCCCCGTCATCAC         CGGATGCCGCC CTCA GGCGGCATCCG          TTTTTGTGCGCCCTG 100 44
JH254_RS02755  548094 ..  548116 + -17.8   -4.1891   TCAGGACAAAAAATC           GAGGGAGGCA TGA TGCCTCCCTC           TTTCTATTGCAAGCC 100 123
JH254_RS02760  549077 ..  549096 +   -10    -4.323   GTAAAATGCAAAAAA            GCCACGAT GAGC GTCGTGGC             TTTTGCGTATTTCGC  83 75
JH254_RS02770  552660 ..  552683 + -18.2  -4.10552   CCCGCGCACAAAAAA          GAGGGGACGC CGCG GCGTCCCCTC           TTTCATTTCATCACC 100 49
JH254_RS02790  555341 ..  555371 + -11.1   -4.8543   CTTCCATGTACACAT      TTGCCCGC-CGCTC ATTC GAGCGTGCGGGCTG       TTTTTCTGAAGGTTG 100 66
JH254_RS02905  577064 ..  577081 + -14.1  -4.74801   TCCCGTGATCCACAA             GGGCGCC TGCA GGCGCCC              TTTTTCATGCGGTTC 100 46
JH254_RS02915  578893 ..  578914 + -14.5  -3.17212   GCCAGCACCATGAAA           GAAGGGAGC CTCG GCTCCCTTC            TTGCTGCCCTCGTCA  81 45
JH254_RS02930  581394 ..  581411 +  -9.1  -4.52589   CGGGGCGAAACAAAA             GGGAGCT CAAA GGCTCCC              TTTTATCTGCGCGGC  83 58
        slyA NONE
JH254_RS02950 NONE
JH254_RS02955  586599 ..  586621 +  -9.1  -5.47218   TGGATGGCTCCCTTT           CGCCCCG CTTGCCTGC CGGGGCG           TTTTTTTGCCTGCCC 100 58
JH254_RS02960  587143 ..  587163 + -18.3  -4.15328   ACAGCCCACACGAAA            CACCCCGGC CTG GCCGGGGTG            TTTGTCATTTCACTT 100 59
JH254_RS02985  592084 ..  592101 + -14.1  -4.08706   CCCACCTACGACAAA             CCCGGCC AGTA GGCCGGG              TTTGTCTGCTCAAAC 100 42
        cysZ  599650 ..  599665 + -11.8  -4.50193   ATCATGATCAAAAGA              GGGGGC GAAA GCCCCC               TTTTCATTACTTAAT  91 49
JH254_RS03010  600423 ..  600436 +  -9.5  -5.45652   ACGAGCAACAAAAAA               GCGCC ATAC GGCGC                TTTTTTGTTGGGCAT 100 73
JH254_RS03035 NONE
JH254_RS03040 NONE
JH254_RS03045  606184 ..  606195 +  -3.6  -4.68593   TCACCTACGTTCTCT                CCCG TATC TGGG                 TTTTTGCCTGATGAA  72 3
JH254_RS03050  607394 ..  607411 + -12.7  -5.14563   CCCGAATGCCTACAA             GCCGGTC AACT GACCGGC              TTTTTTCATGGCCGC 100 47
JH254_RS03055  609724 ..  609742 +   -16  -5.49569   TGGCCTGAATAAAAA             GGGGAGCC GAT GGCTCCCC             TTTTTTGTCTTGCTG 100 46
JH254_RS03065 NONE
JH254_RS03070  612158 ..  612171 +  -3.1  -4.42235   TGACCAGCTGGCGCT               GA-CCC GAC GGGCTC               TTCTTTTTAAAAATT  64 24
JH254_RS03075  613098 ..  613126 +  -4.5   -4.8667   AAACTGAAAATGAAA        CGGGCCGCA AAAATTGAGCG TGCGGCCCA        TTTTTATCCGGTATA  78 34
JH254_RS03080  614361 ..  614373 +  -6.9  -3.54475   GCAATTTCGCGAAGA                GGCCT GAG GGGCC                TTATCTCATGGGAAG  60 19
JH254_RS03090  617334 ..  617360 +  -2.1  -3.21276   CGTATCCTGGGGGAC         GGGGGCCGC CACTCCCAC GCCACCCCC         TCTTCTGGCGCCAGA  43 90
JH254_RS03100 NONE
JH254_RS03105  621364 ..  621382 +   -16  -5.00616   GCGACTGACCCCCCA             CGCCCCGT ATC ACGGGGCG             TTTTTTACCCCGCGC 100 33
JH254_RS03110  623411 ..  623423 +  -9.1  -2.78679   AGCTGGCGCGCCTGG                CCGAG CGG CTCGG                GTTTGCCTGACGCCA  60 3
JH254_RS03115  624056 ..  624072 + -15.1  -5.03145   GACCAGCAACAACAA              GCCCCGC ACT GCGGGGC              TTTTTTCGGGAGTTA 100 39
JH254_RS03130 NONE
JH254_RS03135  629726 ..  629743 + -12.7  -5.06414   TCGCCCATAAAAAAA             GTCCCCG CATG CGGGGAC              TTTTTATTGGAAACG 100 68
         map  650238 ..  650262 + -17.2  -2.60496   GCCACGTTTGACATT          CAACCCCGGC CGCGC GCCGGGGTTG          CTCTTTACCCGGCCC  86 30
        glnD  652955 ..  652968 +  -8.1  -4.66953   ACACGCTCGGATGAA               GCCTC GAAA GAGGC                TTTTTGACGTATTGA  82 40
        dapD  653969 ..  653984 + -11.8  -5.54885   GGCCGTGATTAAAAG              GGCGCC TGAT GGCGCC               TTTTTTGTTGCTCTT 100 48
JH254_RS03240  654615 ..  654630 + -11.8  -5.26918   CATTCCATTCAAAAA              GGCGCC ATCA GGCGCC               TTTTTTATGGCCTCT 100 44
JH254_RS03275  662495 ..  662506 +  -5.8  -3.14344   CGCCTGTTCGCCTCG                GCGT AGGA ACGC                 TTGCTGGCCCGGCTC  52 20
JH254_RS03280  662851 ..  662890 +    -7  -2.96274   AGTTGCCACCCCATC  GTCTGCCCTCCTAGGCC GGGTCAA GGCCCCGG-GGGCTGAC  TATAATTCTCGACAA  53 12
JH254_RS03285  663277 ..  663295 +    -3  -3.92625   AGTCCCCCTCGCGCC             GCTTTCCT GAT GGGCAGGC             TTTGATTAAGCTCTG  56 138
JH254_RS03290 NONE
JH254_RS03295  664478 ..  664505 + -15.6  -2.83894   GCCCCCATAAAAAGA        GAGGGCCTTGCC AGAT GGCAAGACCCTC         TCTCATCCTGCTCAT  82 55
        queF  666091 ..  666140 + -10.1  -3.16881   TCATCAATGAACTCT GGACGG-GCGGGGGTG--GGCTTG GATAA CATGCCTGCACCTCCGTGCCGTCC TTAATCCAATGAATC  66 83
JH254_RS03310 NONE
JH254_RS03315  670194 ..  670213 +  -7.8  -4.36914   CTACTATCGAACCCG            AGGGATGC CAAA GCATCCCG             TTTTCTCCCCAGGGA  77 113
JH254_RS03320  671642 ..  671661 +   -15  -3.94002   CACCACAATGCACCG            GAGGGGCC CATG GGCCCCTC             TTTCATTGACTGGTC  95 47
         xni NONE
JH254_RS03330  673718 ..  673733 + -10.4  -4.77173   CATATGATTTTAAAA              GGGAGC TTCG GCTCCC               TTTGTTTTATGCCAA  95 53
JH254_RS03335  674274 ..  674291 + -12.7  -5.15634   CCAGACACAAAAAAA             CCGGACG TCGC CGTCCGG              TTTTTTCATGCCCTG 100 45
JH254_RS03370  681394 ..  681417 + -18.2  -3.90291   ATGCCACATAAAAAA          CGAGCCGACC CAGG GGTCGGCTCG           TTTCGTTGCAAGGCT 100 45
JH254_RS03420 NONE
JH254_RS03425 NONE
JH254_RS03430 NONE
JH254_RS03435  692234 ..  692250 +  -2.2  -3.19192   GCGCCCCTGAAACCT              GCCG CCCGCCACT CGGC              TTGCCTTGGCTACGC  42 31
JH254_RS03440 NONE
JH254_RS03445  694709 ..  694726 + -12.7    -5.626   ACGGACACAAAAAAA             CCGGAGC AGCT GCTCCGG              TTTTTTTATGCCCTC 100 54
JH254_RS03455 NONE
JH254_RS03460  697253 ..  697280 +  -2.1  -2.54401   TGTGCTAGATAATAC        CAATCAGATTA AAGATG TGATCTAATTG         CTCTATTCTGGTTTC  38 103
JH254_RS03465  698424 ..  698441 + -12.7  -4.60258   GGCAGATACAAAAAA             GCCTCCC GATT GGGAGGC              TTTCTTATTTAATGG  95 115
JH254_RS03500  704802 ..  704834 +  -9.8  -3.85698   CACTTCTTCGAGTGA     C-GACAGCCCCCAAG CTTG CAAGGGGGCTGTCAG      TTTCTGGGCCCCAGC  75 53
        purE NONE
JH254_RS03520  709631 ..  709652 + -17.3  -5.66684   CCCTTGACATGCAAA           GACCCGGGC CAAG GCCCGGGTC            TTTTTTTATGACTTG 100 47
JH254_RS03540  713994 ..  714015 + -13.1  -2.50994   CTGACCACAGGAGCC           GAAGGCATG TTCC CATGCCTTC            ATTCCTCCCCTTCCA  72 37
JH254_RS03555  718973 ..  718985 +  -4.8  -3.14132   CGTTGTTTTTATGCG                TGGG ATGCC CCCA                TTCCTAGAAAAGCAG  47 90
JH254_RS03565  721614 ..  721624 +  -5.4  -4.43669   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTTTTCAGT  70 238
        moaA  725822 ..  725854 +  -5.7  -2.90075   TTAATTATCAATCCT     CACA-TAGGGGTAA TTTACC TTGCCCCTGCTGTG      TCTAATTGCGCCAAG  51 71
        napF NONE
JH254_RS03595  726953 ..  726989 +  -8.6  -2.95789   GCAAAGGAATAAAGC    GCCATGGAGCTGAGCC AGCGC GGCTCGTCACAATGGC    TGTCATTGATGTGAT  58 142
        napA NONE
        napG NONE
        napH NONE
JH254_RS03615 NONE
JH254_RS03620  732195 ..  732237 + -18.4  -3.14931   GGTGCCAGGCTTCTG ATGAGAAGGCCGCCGGATCC CCG GGATCCGGCGGCCTTCGAGA TTAATGGGCAATGAC  90 25
        moaB NONE
        moaC NONE
        moaD NONE
        moaE NONE
        modA  735006 ..  735035 +  -4.8  -5.24129   GTGCCTGACGTGTCC       CAAGGCGGCGCC CGTCAT GACGGCGCCCTG        TTTTTTATCGACACC  85 90
        modB NONE
        modC NONE
JH254_RS03660  737673 ..  737692 + -13.6  -5.24531   AGGTAGATAAAAAAA            GCCGAACC CCGG GGTTCGGC             TTTTTTGTGGGCGCT 100 57
        folE  740722 ..  740746 + -21.5  -3.02324   AAAGGGTAGTGCTCC          CGGGGCCTGTC GCC GACAGGCCCCG          TCTCCTTTCCCTCAC 100 32
JH254_RS03680  742638 ..  742672 + -16.5  -3.92075   TGTCACCCGGCACAG    CGCAGAAGGCCCCGCC AATC GGCGGGGCCTTGT-CG     TTTCTGGCTGGACCT 100 48
JH254_RS03690  745293 ..  745305 +  -4.7  -3.61398   GCAGGCGGCCCGGGT                CAGGG CCA CCCCG                TTGTTGGCGCGAAGG  55 265
JH254_RS03700 NONE
JH254_RS03705  747491 ..  747515 + -20.1  -3.74224   TTATCTGGATACACA          CAGAACCCGGC TAT GCCGGGTTCTG          TTTGCCTGCTTTCCC 100 148
JH254_RS03710 NONE
JH254_RS03715  749007 ..  749028 + -15.9  -3.90112   ACCCATGATGTGAAA           GAGGGAGGC GCAG GCCTCCCTC            TTTCGTTGCGACGCC 100 49
        speA  755076 ..  755093 + -14.1  -5.09204   GACGGACACGAAAAA             CGGCGCC TTCG GGCGCCG              TTTTTGTTGCGCTGT 100 70
JH254_RS03735  755482 ..  755516 + -13.4  -3.14211   CCAACGCTGACTGCC     TGCGGGCCATCGGGGT ATC GTCCCGGCGGCCCGCC     TTGCTCAGCCCGCCT  78 31
JH254_RS03750  759129 ..  759149 + -18.3  -4.02719   TGACCCAGATCAAAA            CGGCTCGCC ATT GGCGAGCCG            TTTGCTGTTTAGTCG 100 38
JH254_RS03760  762965 ..  762982 +  -4.9   -4.1891   TAAGTGGTTAGCCCC             CTGT-GCA CCA TGCCACAG             TTTCTATTGAGGCGG  61 60
JH254_RS03765  763749 ..  763800 +   -21  -3.55563   TGAAAGCCGCCTCGA CG-CATCTAACGCAACAGGGCAGCC ATG GGCTGCCCTGTTGCTTTGGGGGACG TTTCGGGAGTGGCGT 100 366
        rluF  766775 ..  766804 + -22.3  -3.85698   TTCCCGCACCCTGAT       GCACAACACCGGC CAAG GCCGGTGTTGTGC        TTTCTGGCCCCCAAG 100 51
JH254_RS03795  769546 ..  769559 +  -8.1  -4.25104   CGGGCGGCCAGGGGT               CAGGC CAGG GCCTG                TTTTGGTACCACGGC  77 43
JH254_RS03815  771591 ..  771613 + -15.6  -2.71011   CATCAGGATTGTCCA           CAAGGCCCCG TCA TGGGGCCTTG           TCGTTGCCGGGGGCT  82 52
JH254_RS03820  772202 ..  772218 + -15.1  -3.46602   CACTCGCTTGCAAAA              GGGCCCG TTA CGGGCCC              TTGTCGTGTGAGGCG  88 45
JH254_RS03830 NONE
        cydB NONE
JH254_RS03840  776644 ..  776664 + -16.9   -4.4078   TTGCCCATGAAAAAA            GGCCGACAC AGG GTGTCGGCC            TTTTGCTTGCCCGGG 100 51
JH254_RS03870  781537 ..  781570 + -12.5  -5.21709   GGCTTGCGAGCGCCA     AAAAAGAGGCCGACA TCGC TGTCGGCCTCTTTGC      TTTTTTCATCTCAAG 100 135
        glpT  785907 ..  785927 + -11.1  -5.23316   AGGTACACTGCCAAA            GGCCCCG CACCTGC CGGGGCC            TTTTTTCGTCTCATC 100 77
JH254_RS03890  786734 ..  786755 +  -7.1  -5.52384   TCCCTGCACAGGCAT           CAGGCCGCC TCGG GGCGGCCGC            TTTTTTTCCTGCCCC  93 44
        glpD NONE
        glpQ  789863 ..  789881 + -13.1  -5.60993   AACACGGGAATGCAA             GCGGGGC CAGGT GCCCCGC             TTTTTTTGTGCCCGG 100 53
JH254_RS03905  791306 ..  791331 + -16.3   -3.7347   TGATTGAACCATCGA         GGTATCACTGC CCAC GCAGTGATACC          TTGTTGCCTCTTGAA 100 62
        tyrA  792551 ..  792566 + -11.8  -4.94672   GATATCCATACAAAA              GGGGCC TGAT GGCCCC               TTTTTCATGTTGTTT 100 49
        yejK  806993 ..  807016 + -18.2  -5.27335   CATTTCTTGCAAAAA          GGCACCGGAG TCCG CTCCGGTGCC           TTTTTATTTAAGGGG 100 55
        malE  808552 ..  808575 +    -8  -2.94622   GTAAGCATGCACTAC          CCGGGAGGCC TTCG GGCCTCCCAC           TCTCTCAATCTCTCT  58 37
        malF NONE
        malG  811175 ..  811212 +  -4.7  -2.73159   CGTGAAAGGTTAACG   GTTCATGGCCGGGGGAG CTGG CTCCCCCCGTCATCACG    ATTTGCAAAGATTCA  44 28
        ugpC  812427 ..  812444 + -12.7  -5.07486   CGTTCAATGCCTTTT             GCCGGTC GCAA GACCGGC              TTTTTATTGCCCGTC 100 73
JH254_RS03995  814288 ..  814302 + -11.4  -5.55769   GATAGCCGTAAAAAA               GGAGCC ATG GGCTCC               TTTTTTGTTGTCCAG 100 51
JH254_RS04015  818278 ..  818307 + -14.9  -4.17762   AGCGGGTTGATGGCA       GGCGGGGTGCTCC TTTG GGGGGGCCCCGCC        TTGTTTTGCAGGCTA 100 47
        arsC NONE
JH254_RS04030  819658 ..  819683 + -18.3  -3.05022   GAAGGCTGAGCCCCT         CCCTGTCCGCC TGCT GGCGGGCAGGG          TATGTGTCTGAAACC  90 32
JH254_RS04035  820989 ..  821004 + -11.8  -5.67063   TTCCCCCGATGACAA              CGCCCC GCTC GGGGCG               TTTTTTTATGGTGGG 100 44
JH254_RS04050  822799 ..  822818 + -13.6  -4.72272   TGATGGGTAACAGTC            GGAGGGAG CCTG CTCCCTCC             TTTTTCATGCAGCAA 100 38
JH254_RS04055  824020 ..  824039 +   -15   -3.9712   GTTCATCAACAAAAA            GCCCGGCA GCAG TGCCGGGC             TTTGTCGTGCCATGG  95 70
JH254_RS04065  826247 ..  826272 + -14.1  -3.27704   GATTCAAGCAATTCA         TCTCGTCCATC TATT GATGGACGGGA          TTCAATTTAAACCAT  83 9
JH254_RS04070  827187 ..  827206 +  -4.3  -3.38514   AGTGACGGGCCCGAT            TGCGATG GAGCTG CATTGCA             TATGTTTGATTTGAA  52 110
JH254_RS04075 NONE
JH254_RS04080  828662 ..  828677 + -11.8  -5.60993   GCCAGCAGAGAAAAA              GCCCGC AACT GCGGGC               TTTTTTTATGGACCA 100 43
JH254_RS04100  835166 ..  835189 + -18.2  -4.63218   CACTCTGTATGCAAA          CGGGCCACTC CAGT GAGTGGCCCG           TTTTGTTGCCGCACG 100 70
JH254_RS04130 NONE
        pbpC  848135 ..  848168 + -16.9  -3.47403   GTGAGCGCCAGAATA     TTGACGGCATCGGTGA TGG TC-CCGATGCCGTCAG     TTGATTGTCGATTCC  93 48
        thiI  850866 ..  850891 +  -9.8  -5.65177   CAGGCTGTGTAAGAA         TCCGAAACTC CTTGTT GGGTTTCGGA          TTTTTTTATGCGTAT 100 118
JH254_RS04150  852653 ..  852669 +  -4.3  -4.57073   GTTCGGCGCCCTCCA              GGGACAG CTG CTGATCC              TTTTTCAGGGCGATG  72 451
JH254_RS04190  859640 ..  859650 +  -4.6   -2.5893   CGCTGTTCACCAAAC                 CCTG AGC CGGG                 CGTTTTCATTTGGCC  43 21
JH254_RS04195  861377 ..  861424 +    -2  -3.61398   GTCCAGCTGCGCACC GCCTGCGCTACCAGC-TCGTCGC GATTG GCGGCGAAGC-GGTAGAG-GGTC TTCTTGGCAACCCCC  48 463
JH254_RS04205  862453 ..  862469 + -10.8   -3.9712   ATGGTCATAAAAAAA              CCGGGC ACTGG GCCCGG              TTTGTCATGCAGTCA  79 95
JH254_RS04245  873929 ..  873944 + -10.4  -4.88407   TGCGTCCATGAAAAA              GGCAGC CTCG GCTGCC               TTTTTCATTCCCTGC 100 51
JH254_RS04255  875254 ..  875274 +  -6.7  -3.90048   CGGTGAGCGTGCCCT            GGGGAGACG CCG CTTCGCCCC            TATTTTTCGACGAGG  66 170
JH254_RS04260  876101 ..  876116 + -11.8    -5.252   AGGATGGAGCAAAGA              GGGGCC GCGA GGCCCC               TTTTTTGTGCGGCTC 100 48
JH254_RS04270  878063 ..  878080 + -14.1  -5.24531   TCCCTGTGTTTTTTT             CCGGGCC CGAG GGCCCGG              TTTTTTATCCAGCCT 100 57
JH254_RS04275  878787 ..  878817 +  -6.1  -3.28712   GCTTGTCAAAGGAGA      GGGA-GAGGGCAGA CCCG TCTGCGCGCCTCCC       TTGTCCCCCGCACCG  54 62
        oxyR  879801 ..  879830 + -20.9  -3.90744   CTCGTCATCCCGAAA       CAAAAACCGGCGC CTGG GCGCCGGTTTTTG        TTGTTTCCAGGGGGA 100 50
        tapM NONE
        tapN NONE
        tapO NONE
JH254_RS04305 NONE
JH254_RS04310  887680 ..  887698 +  -3.8  -3.04122   GAGGCTGGGGCGTAA             GGGCTG CGGTTGC CAGTCC             TGGTTTCTACTGAGA  44 87
        aroK NONE
        aroB  889413 ..  889424 +  -4.4  -3.22884   GGCGGTGATCGAGTC                TGGT CGTG ACCA                 TTAATAAATTGCTCA  49 10
JH254_RS04325  890991 ..  891009 +  -5.8  -5.03314   CAGCCACCCGAGGAA             GGGGGTAG AAT CACCCCCC             TTTTTTGGGCATAGC  86 42
JH254_RS04330  891919 ..  891949 + -12.7  -3.99324   TTGCCGTCGGCTGAG      TGAACAACGGTCCC TGAG GGGGCCGTTGT-CA       TTTCTGATGCTGCCG  89 27
JH254_RS04335 NONE
JH254_RS04340 NONE
        trpS  894502 ..  894527 +  -6.1  -4.66535   GAAGGTGTAGTAGAA         GAGAGCTGGGT GGAT GCCTGGCTTTC          TTTGTTTTACACCTT  75 49
JH254_RS04350  895013 ..  895031 +  -2.3  -4.15044   GGACAGACTGCACAG             CAGGTGA GGTGA TCGCCGG             TTTATTAACGCAAAG  56 225
JH254_RS04355  895691 ..  895708 +  -7.7  -3.73072   AGGGGCACCAGTTGC             TGGCCAA CTTT TTGGCCG              TTTCCTGAAAAAATT  67 0
JH254_RS04360  897228 ..  897259 +  -5.6  -2.80816   TCCAAATTGAGGTGG      GGAGCCCTCCCGGC AGGA GCCGGGACCCCACC       TGTCGTCAATGAAAG  47 41
        astA NONE
        astD  899863 ..  899883 + -10.4  -2.98823   CAAGAAAATAAAAGA            GGGGCACT GAACA GGTGCCCC            TGTCTGTACCCGCAA  67 44
JH254_RS04375  900730 ..  900745 + -11.8  -5.68039   CCGCCATGAAAACAA              CGCCCC GCCT GGGGCG               TTTTTTTATGGATTT 100 44
JH254_RS04380  901439 ..  901460 +  -9.5  -3.45023   TTCCCGGGTTGAGCC           GGTACCTAT GCCC ATGGGTACC            TTGTCGTGGTACTGC  65 320
JH254_RS04390  903359 ..  903382 + -18.2  -3.16564   GCTATCGGATACAAA          GAGGGCTCCC CGCG GGGAGCCCTC           TTCATGGGATCAGGC  90 46
JH254_RS04410  907347 ..  907364 + -14.1  -5.06414   GACAGCAAACGATAT             GGCGGCC TGCG GGCCGCC              TTTTTATTGCCCGCA 100 42
JH254_RS04425 NONE
JH254_RS04430  911767 ..  911808 +  -9.3  -2.78384   CCCCCATGCCCGCCT GCTCGGCCCGCATCCTGGC ATGG GCCAGCATGTCCGCCGAGA  TATCCTGGGCCACAA  57 455
JH254_RS04465 NONE
JH254_RS04470 NONE
JH254_RS04475 NONE
JH254_RS04480  918669 ..  918685 + -10.8   -4.4595   CCATCCTTCAGACAA              CCCGGC CTCGC GCCGGG              TTTTCGCTTTTCTGG  88 38
JH254_RS04490  919951 ..  919966 +  -4.6  -4.25104   CTTTCCCATGAAATT              CGGCAG GGTG CTGCCA               TTTTCCTGCCAAAGA  65 78
JH254_RS04495  921308 ..  921325 + -14.1  -4.53774   AGAGCAGACAAGCAA             CGGGGCC CGCA GGCCCCG              TTTTCATTGGTTTGT 100 50
JH254_RS04515 NONE
JH254_RS04520  929228 ..  929243 +  -3.2  -3.02144   GGCGCTTCGATGGCG              GTAGAG TGCC CTCTTC               TCTTCACCAGGATCG  42 82
        pepE  930036 ..  930059 + -16.8  -3.70925   TCCTGCCAAACGACA          GAGGGATGGC CTGC GCCATCCCTC           TTGCTTTGTTGCTCG 100 41
        fumC  934770 ..  934785 +  -8.2  -4.41494   AAATAAAGATGAAAA              GGGTGC CATG GCGCCC               TTTTCATTGCAGATC  79 121
        putA  939612 ..  939635 + -18.2  -4.06993   ATAGTGACGGAGACT          CAAGCCCCGC CGAT GCGGGGCTTG           TTCTTTCGTCTCTGG 100 48
JH254_RS04570  943654 ..  943671 + -12.7  -5.08601   GACCCATTTCATCAA             GGCGACC TCAG GGTCGCC              TTTTTATTGCCATCA 100 50
JH254_RS04580 NONE
JH254_RS04585 NONE
JH254_RS04590  947841 ..  947869 +  -2.9  -4.11216   TCACCAGCTCGCCAT        CGTTGAGCACCAC TAT GTTGCGCACCACG        TTTTGCAGCTCGCGC  61 370
JH254_RS04605 NONE
JH254_RS04610  951266 ..  951282 + -15.1  -5.31275   GCCAGCCATAAAAAA              CCCGCGC CAT GCGCGGG              TTTTTTATCATCGGC 100 46
JH254_RS04625 NONE
JH254_RS04630  954064 ..  954094 + -12.4  -4.36411   CGTCTGCTGGCCTGA       TGTCGCGGCGAGCC AAG GGCTCGCCGCCCCC       TTTTCCTCCTTGCTC  91 26
JH254_RS04635  955092 ..  955118 +  -9.5  -2.54574   GCAGGAACAGACTCA        GGGCGCGAACCGG TAA CCG-TT-GCGCCC        CTCTTCCTTGGCCTG  62 10
JH254_RS04645  956574 ..  956584 +  -2.4  -3.29144   TCCCCCAAGCGTAAC                 GCGG TCA CGGC                 TTATCGGGCGGCTCA  44 27
JH254_RS04650 NONE
JH254_RS04655  958246 ..  958266 +   -14  -4.18018   CTCTTTCAACAAAAA            CGGCCTGC TTCAC GCAGGCCG            TTTTCCATGCACGCC 100 44
         crp  960105 ..  960121 + -13.7  -4.16279   GCCGTTGGATAAAAA              GGCTGCC CAT GGCAGCC              TTTTCCGATCCTCTC  95 70
JH254_RS04675  961095 ..  961111 + -13.7  -3.96148   GCAGCAAGACAAAAA              TGGGGCC CTC GGCCCCA              TTTCTCATCACGGCA  93 132
JH254_RS04700 NONE
JH254_RS04705 NONE
JH254_RS04710  973346 ..  973365 +   -15  -4.51378   GACATAACAACAAAA            CGGGCAGC CCAG GCTGCCCG             TTTTCTCATCTCGCT 100 46
JH254_RS04725 NONE
JH254_RS04730 NONE
JH254_RS04735  977470 ..  977499 + -20.9  -4.96848   GGTGAGATTCAGAAA       CAAACAGAGCGCC CTCG GGCGCTCTGTTTG        TTTTTGTCTGCGGGA 100 190
JH254_RS04745 NONE
JH254_RS04750  980817 ..  980837 + -18.3  -3.33798   TCATCCAAATAGAAA            GGGGCTGCC AAT GGCAGCCCC            TCTGTTTATCCGGCT  91 51
JH254_RS04770  985087 ..  985109 +  -4.8  -5.00616   CTTTGCCGCCCCCTC           CCCATTGGTT TAC AATCGACGGG           TTTTTTGGAACCGGG  78 178
        ettA  986918 ..  986935 + -12.7  -5.17054   GGTATGACGTCACAA             GGGGAGC CGGG GCTCCCC              TTTTTTGCCTCTTCT 100 65
JH254_RS04780  987335 ..  987352 +  -4.7  -3.98661   TCCCGATGTGGAAAC             GGGGCTC TATT GGTCCCC              TTTCTCCTGCCTCTG  59 41
JH254_RS04785  988974 ..  988992 + -14.6  -5.60993   CTCTGAAAACAAAAA             TGCCCGTC ATC GACGGGCA             TTTTTTTATGGCGGG 100 69
        lptD NONE
        surA NONE
        pdxA NONE
        rsmA NONE
        apaG NONE
JH254_RS04830  998620 ..  998642 +   -22   -5.1861   GAGCTGAAAACAGAA           CGGGCCCGGC AAT GCCGGGCCCG           TTTTTTCATGATGAG 100 110
JH254_RS04845 1003452 .. 1003471 + -12.2  -4.87893   TCGCCCATAAAAAAA            CGGTCAAC CCAG GTTGACCG             TTTTTCGTTCCACTT 100 55
        ispB 1008436 .. 1008475 +   -24  -2.53263   TGATGCCAGCCGGCG  GACAATAAAAAAGAGGCC CTCT GGCCTCTTTTTTATTGTC   TGAATTCGCCGTGCC 100 38
        queG NONE
JH254_RS04930 1021245 .. 1021264 +   -15  -2.94218   CCAGCAACATCAGAA            GACCCGGC CCGT GCCGGGTC             TCTCTCATCCGGGCT  82 44
        metN NONE
JH254_RS04945 1023858 .. 1023876 +  -2.4  -2.80195   GCGCGGGTGAGCGCC             TGGTCAAA CAA TGTGATCA             TCGTTAATCGTCGAT  39 0
        metQ 1024730 .. 1024748 + -12.4  -6.06723   TCACTCTGGAAAAAA             GGCCACGT CAA GCGTGGCC             TTTTTTTTTACCCCC 100 45
        rfaH 1025435 .. 1025460 + -20.5  -5.00642   TCGGGCCAAAAAAAA         CGGGGCAGACC CAGA GGTCTGCCCCG          TTTTTCTCTCCCTTG 100 152
JH254_RS04990 1038548 .. 1038570 + -19.2  -3.51232   CCCGTACCAAGCAAG           GAGGCCACCC CCG GGGTGGCCTC           TTCATTTGCACAACC 100 41
JH254_RS05015 1042250 .. 1042270 + -16.1  -4.51378   ACAACCCAATGAAAA            CGGGCCCCG TCA TGGGGCCCG            TTTTGTCATCTGCGT 100 50
JH254_RS05035 1046336 .. 1046347 +  -7.2  -3.85698   CGTCAATCACAAGTA                CGCC TGAC GGCG                 TTTATCCGAGGAGAC  67 19
         bcp 1046849 .. 1046874 + -14.7  -2.90496   ACCAGCGGCATTGTT         GCAGGGCTCGC CATG GCGGGCTCTGC          TCGTTTCACCACGGC  80 44
JH254_RS05045 1047536 .. 1047551 + -11.8  -3.98661   CCTGAATGTGAAAAA              GGCGCC TGAG GGCGCC               TTTGTCGTCAGTCTG  85 36
JH254_RS05055 1049539 .. 1049556 + -14.1  -4.30576   TTAGCTGTAGAGCAA             GGCCGCC CCAG GGCGGCC              TTTTCCTGATCCCAA 100 42
         pta 1051775 .. 1051790 + -11.8  -5.64274   CGATGCAATGAAAAA              CCCGCC GAGA GGCGGG               TTTTTTTATGGCTCG 100 54
        leuA NONE
        leuB NONE
        leuC NONE
        leuD 1062609 .. 1062628 + -13.6  -4.78237   AGCGAGTAGAATCAA            CAGGGAGC CAAG GCTCCCTG             TTTTATTGTCGGGTC 100 58
JH254_RS05115 1063623 .. 1063641 +   -16  -2.87132   AGGGGAAATGAGACA             GGCCAGCC CAT GGCTGGCC             TGTCTCGAGGAGGAC  82 30
JH254_RS05125 NONE
        thiP 1066854 .. 1066874 +  -2.3  -3.08133   CCCAGGATCCGCCCG            GGCACGCCC CTT GGGCGCCAC            TTGGATCAGTCACTC  42 69
        thiQ NONE
JH254_RS05140 1067859 .. 1067880 + -15.9  -3.96148   GGCGGGATCAAAAAA           GGGGAAGCC GTCC GGCTTCCCC            TTTCTCATGCAGAGA 100 45
JH254_RS05210 NONE
JH254_RS05215 NONE
JH254_RS05220 NONE
JH254_RS05225 1088172 .. 1088182 +  -6.8  -2.79915   CAGGCGGCGGGAAGG                 CGAC CAG GTCG                 TCTGCTGCCATGAAT  51 77
JH254_RS05230 1089301 .. 1089318 + -12.7  -3.20227   TACGGGATAAAAAAA             TGGGGCC TGCG GGCCCCA              TCTTCATGGTTGGAG  75 110
         gpt 1092764 .. 1092793 + -16.5  -4.02334   TGATGCAAGGTTGAC       CACATTGAGCCCC TTTT GGGGCTCAATGCG        TTTCTGGTGTGGCTG 100 99
        frsA 1094150 .. 1094170 +  -6.9   -2.6563   ATAAAACTAAAAATG            TAACATCAC CAT GTGATGGTA            TGGCTTGTTCAACAG  50 42
         crl 1094652 .. 1094663 +  -5.8   -3.4052   ACCGAGCCCGCAACT                GCCT GGCG AGGC                 TTAATTGCCTTGCAG  56 89
        proB NONE
JH254_RS05260 1097145 .. 1097180 + -11.2   -5.5112   AGGCACGCTCAGCAA    GCAGGACAATGCCGAC TCAG GTCGGCATTTTTGTGC     TTTTTTATTGCTCGC 100 44
JH254_RS05265 1098391 .. 1098411 +  -9.7  -3.60296   GTCGAAGCCGTGCAG            CTGATCCAC CAC GTGGACCAG            TTTGAGCTCGGCCTG  68 498
JH254_RS05275 1099463 .. 1099486 + -14.6  -2.56747   ACAGCCCTAGCTGTC          GGGCCTGATG CCGT CATCGGGCCC           CTCTTGTCCTGCCTC  78 31
JH254_RS05285 NONE
        cobA 1103791 .. 1103805 +  -7.8   -4.2349   AGGCCCTGGAACGGG               TCGCCT GAG GGGCGA               TTTTCCCTCTACCCC  74 18
JH254_RS05295 1104716 .. 1104742 + -23.8  -5.86061   CAACAGGGCAAAGAA         GCCCCGCCGATC CCG GATCGGCGGGGC         TTTTTTTTGGTCGCG 100 233
JH254_RS05300 NONE
JH254_RS05305 1107164 .. 1107174 +  -4.6  -2.52795   GTTGTCCTGGGACAA                 GCGC CAG GTGC                 TGCGTTAACCACATT  43 7
JH254_RS05310 NONE
        nirB NONE
        nirD 1111037 .. 1111056 + -13.6  -5.64274   TATCGACATCAGGGA            TCACCGGG CTTG CCCGGTGA             TTTTTTTGTGGCTGA 100 53
JH254_RS05325 NONE
JH254_RS05330 1113171 .. 1113188 + -12.7  -4.49389   GCGGAAGATGCAAAA             GAGGGCC GACA GGCCCTC              TTTTCATTGTCAGAT  95 49
JH254_RS05340 1115434 .. 1115451 +  -6.9  -3.43264   GGGCCAGTACAGCTT             GGGTCTG GCAT CGGGCCC              TTATCATGACTCCTT  58 120
JH254_RS05345 1115893 .. 1115929 + -15.1  -4.15044   GTGTACGGGCGCAAA    TGAGCAAAGGGCGGGGG AAA TCCCCGCCCAGTGCTTA    TTTCTTCGGGCGGAA 100 23
JH254_RS05355 NONE
JH254_RS05360 1118621 .. 1118637 +  -2.3  -4.03885   CCTGTTCAAGATATA              AAAAAAC AGG GTTTTTA              TTAATTTTTTTCACC  56 49
JH254_RS05365 1119717 .. 1119727 +  -4.6  -2.88544   ATCATACGCGCCATG                 TCGG TGA CCGG                 TATCTGGGGGTGGAA  44 115
JH254_RS05370 NONE
        folA 1120871 .. 1120892 + -13.7  -5.26918   CTGATGCCATGAAGA           GCCCCTTGC GACA GCAGGGGGC            TTTTTTGTGCCCTGT 100 46
        proV NONE
        proW NONE
        proX 1124697 .. 1124716 + -16.4  -5.60993   CTGCACAAAGAAAAA            CGCCCGGC AGTT GCCGGGCG             TTTTTTTGTGGGCGC 100 60
JH254_RS05410 1130107 .. 1130126 + -16.4  -4.42238   TCCGTCATAAAAAAA            CGCCCCGC AATT GCGGGGCG             TTTTGATTGCCATGG 100 86
JH254_RS05425 1135096 .. 1135121 + -20.5  -5.31519   GGCCGCCATGACAAA         GCCCCGCACTC TGCC GAGTGCGGGGC          TTTTTGTTTAGATGT 100 164
        ansA 1138126 .. 1138150 + -20.1  -4.14598   TAGAGAGGAAAAAAA          GAGGGGAGCCA TTA TGGCTCCCCTC          TTTCGTTTCGTTACC 100 213
JH254_RS05450 NONE
JH254_RS05455 1141572 .. 1141585 +  -9.5  -5.65177   TGCCCCATAAAAAAA               CCGCC TGTC GGCGG                TTTTTTTATGGCTGT 100 51
JH254_RS05465 1145832 .. 1145848 + -12.3  -4.76075   TCGTATCCTGACAAA              CCCCTGA ACC TCAGGGG              TTTTCTTCATCTGGT 100 54
JH254_RS05470 1146477 .. 1146494 + -11.3  -5.86976   CGCAGAACGCCAAAA             GCCCTGA TTAT TCAGGGC              TTTTTTGTTTTCTGA 100 43
JH254_RS05475 1148506 .. 1148520 +  -5.6  -3.23692   GCCGACGATCTGCAG               CAGCAG TGC CAGCTG               TTCATCCTCCTCGTC  51 454
JH254_RS05495 1152417 .. 1152434 +  -5.5  -3.33815   GGCATGGGGGCCGAG             CACCAGC ACCA GCTGATG              TTCGTTCAGCACGAT  52 137
JH254_RS05555 1165489 .. 1165512 + -15.4  -5.02476   CTTCAGGTTGAAGAC          CAATGCCACC CTCG GGTGGCATTG           TTTTTTGCAGCGTCT 100 51
JH254_RS05560 1166083 .. 1166096 +  -3.7  -4.25104   CTAGCGCCAGCCCCC               GGGGC CCGC GCCCA                TTTTCATCCACGCCG  63 123
        nrdR 1166602 .. 1166626 + -11.3  -2.77013   CTATGTGAATAAGAG          AGGGGCTGCCG TTG CGGCAGCGCCA          GTTGTTACACCAGTG  69 58
        ribD NONE
JH254_RS05575 NONE
        ribB 1169938 .. 1169962 + -17.2  -5.24531   CGGTTGAATTCATCA          CCATGGCCGC CCGTT GCGGCCATGG          TTTTTTGTCGCGGCT 100 51
        ribE NONE
        nusB 1170975 .. 1170991 +  -9.4  -4.84527   GCAATTAAGAGAGGA              GCCAGC TTATT GCTGGC              TTTTTACTGTATGGG  86 56
        thiL NONE
JH254_RS05600 1172524 .. 1172545 + -17.3  -5.71712   CGGATATACCGCACA           CGCAGGCCC TGAG GGGCCTGCG            TTTTTTTGTATGCAA 100 103
JH254_RS05605 1174825 .. 1174836 +  -7.2   -4.1399   CAAGCTAGGAAAGCA                CCGG TTCG CCGG                 TTTGTCTGTCAATAA  71 33
JH254_RS05610 1176458 .. 1176468 +  -2.4  -2.71011   TAAGGAAGGACCCGG                 CGGG GCA CCCA                 TGGTTGCCCCGCCAT  38 51
JH254_RS05615 NONE
JH254_RS05620 1178623 .. 1178642 + -10.6   -5.1963   CAGTGAATAACAAAA            AGGGCGCC ATAA GGCGCCCA             TTTTTATTGCTTGCG 100 200
        pomA NONE
JH254_RS05645 1183681 .. 1183708 + -11.2  -3.89695   CCATCCGAACCGACA        GCTGCGGCTCTC TTTT GATTGCCGCAGC         TTCTCTTTATAAAGC  83 112
        greA 1184237 .. 1184257 + -16.9  -3.86252   CGTCGGGGAAAGAGA            CAGGGGAGC CGG GCTCCCCTG            TTGTCTTTAGTCACC 100 46
        rlmE NONE
        ftsH 1188001 .. 1188018 + -14.1  -5.27335   TTGCCATGATACAAA             CCCCGGG CTTG CCCGGGG              TTTTTCTTTGCACGA 100 42
        folP NONE
        glmM 1190269 .. 1190307 + -17.7  -3.62522   AATCGGCGTTTTAAT  GA-ACAACCAAGGCGGCT TTTT AGTCGCCTTGGTTGTATC   TTGTTCAAACGATTC 100 27
JH254_RS05685 NONE
        secG NONE
JH254_RS05695 1191596 .. 1191609 +  -9.5  -2.56747   CAATTAAGCAGTGAA               CCCGG GTAA CCGGG                ATGTTATAGTCGCTG  62 39
JH254_RS05700 1191818 .. 1191838 + -12.6  -5.24796   AGGGTAAAGCGCCAA            GCCCCGAT TTGAC ATCGGGGC            TTTTTGTTATGTGCA 100 93
        rimP NONE
        nusA NONE
        infB 1196636 .. 1196651 + -11.8   -4.3739   GCGTTAGACAAAATA              GGGGGC CGCG GCCCCC               TTTTATCGCAGGATA  91 46
        rbfA 1197106 .. 1197122 +  -7.3  -2.71924   GAGGATAACGCCTGA              GATGTCT CGT AGACGTC              GTTTCAAAGGCCGTG  53 26
        truB NONE
        rpsO 1198487 .. 1198506 + -13.6  -5.45652   AGATTTCGCAAAAAA            GGGGAACC GCGA GGTTCCCC             TTTTTTATTGCCCGT 100 50
         pnp 1200801 .. 1200818 + -12.7  -5.29782   GCCGTATGTGAAAGA             GCCGACC CTTG GGTCGGC              TTTTTTGTGCCTGTC 100 45
JH254_RS05740 1202378 .. 1202391 +  -2.3  -3.72678   CCGACATCAGGAAGA               GGTTG AGGT CTACC                TTTCCCTCCTCTTTG  52 268
JH254_RS05750 1203062 .. 1203093 + -20.4  -4.68593   GGAAGGGCAGCGCAA      TAGAAAAAGCCGGG CATG CCCGGCTTTTTCTA       TTTTTGGATAATGCA 100 42
JH254_RS05765 1206484 .. 1206515 + -23.2  -4.17296   GCAAGTGCAGTTAAA      CAACAACGGCGACC ATCA GGTCGCCGTTGTTG       TTTCTGTATATCCGG 100 47
        xerD 1211718 .. 1211731 +  -9.5  -5.75342   CCCTGCAACAAAAAA               CCGCC CGAA GGCGG                TTTTTTTTCAGCACA 100 53
JH254_RS05800 NONE
        recJ 1214864 .. 1214883 +   -15  -5.70829   TTTTGCTGCCTATGA            CGGCCACC TCAG GGTGGCCG             TTTTTTTATGGTGTT 100 55
JH254_RS05810 NONE
JH254_RS05815 1216948 .. 1216972 +  -9.9  -2.77895   CGCCTGCCTTCTCTG          GCTTGCCGCTG CAG CGGCGGCAGGG          GTTGTTGCAACTAAG  63 262
        nqrE 1218525 .. 1218535 +  -3.2  -3.14564   GGGCGTCAGGCAGCG                 CCAT CCC GTGG                 TTGCTGGCAAGATCC  44 436
JH254_RS05950 1241456 .. 1241481 +  -8.9  -2.62616   ACGCGCATCGGCCTG         CCGGGAGCGCC CGAG GGTGTTCCCGC          TCATATCGACAATGC  59 57
JH254_RS05955 NONE
JH254_RS05960 NONE
JH254_RS05965 1245315 .. 1245346 +  -2.1  -4.42386   TCAAGTCCGGAACCT      AACCTTGGCGCCC GTCCCG GGGCGCCAGACTG       TTTTATGGATCGGCC  63 24
        potA NONE
JH254_RS05975 NONE
JH254_RS05980 NONE
JH254_RS05985 1249077 .. 1249088 +  -3.6   -3.4331   AGGCAGGCGGAAAGA                TGCC TTGT GGCG                 ATTTTTGCTGCGACT  50 41
JH254_RS05990 1249274 .. 1249322 + -24.1  -3.01791   GAATCCTCTCACACC GACCACATTTGAAAAGGCCGCTC AAT GAGCGGCCTTTTCGCATTTGGTC TGTTGAAGCAAAGCT 100 21
        recQ 1252600 .. 1252617 +  -3.3  -3.40522   TACTGCCGCCGGTAG             GGTCGGC CCAG GTAGACC              TTGTCATCGACCGCT  48 26
JH254_RS06015 NONE
JH254_RS06020 1254920 .. 1254938 + -11.8  -2.54896   ATCTCGCCCCTTGAT             TATCGCCA TGG TGGCGATA             TGGGTTCCCTAACCC  70 114
JH254_RS06025 1255656 .. 1255679 + -11.8  -5.46629   ACAAGCCTGATGAGA          TTGACTACCC CCAT GGGTGGTCAA           TTTTTTTGCGATCTT 100 31
JH254_RS06115 NONE
JH254_RS06120 NONE
JH254_RS06125 1279239 .. 1279254 + -10.4  -4.73864   CAAGGCATGAAAAAA              GGGACC CTCG GGTCCC               TTTTGTGTTGCTTGG  95 95
JH254_RS06160 1287582 .. 1287592 +  -8.2  -2.90992   GAAGGTCCGCTTTTT                 CCCC CAT GGGG                 TCATTTACCCGGATT  58 524
JH254_RS06165 NONE
        mglB 1292037 .. 1292059 + -14.9  -3.63922   TAATTCCTCCCCTCA           GGGCAAGGG AGATC CCCTTGCCC           TCTTTTCAACCAGAT  90 38
        mglA NONE
        mglC 1294638 .. 1294657 + -16.4  -4.32857   AAGCATTGGCAGGGA            GGGCCGGG TCAT CCCGGCCC             TTTCTCTTTGGAGGG 100 39
JH254_RS06185 1296852 .. 1296866 +  -3.6  -5.06451   GGTTTCCCGAGAAAG               GATAAT GAA GTTATC               TTTTTTAAAATCATG  79 462
        arcA NONE
        arcC 1300297 .. 1300308 +  -5.8  -2.62396   ATACCGTCAATGCCT                GAGC CAAG GCTC                 TGGTCTGAACAACTG  48 24
        argF 1301395 .. 1301414 + -16.4  -4.10657   GACGTCGTCAGTGGT            GCCGGGGG GTGA CCCCCGGC             TTTTCAACCATGTGA 100 39
JH254_RS06210 1302935 .. 1302953 +   -16  -4.95155   ACATAGGGACAACAA             CGGGAGCC TGG GGCTCCCG             TTTTTGTGGTCTGAC 100 51
JH254_RS06235 1306249 .. 1306269 + -16.9  -3.71649   GCCATTTTTCAGAAA            GGCCAGCTC ATT GAGCTGGCC            TTTCGCATTTCCGGC 100 37
JH254_RS06240 1307836 .. 1307859 + -19.6  -2.54919   TGCTCCCTGATGGTA          CGAGGCCGCC TTCG GGCGGCCTCG           CTGTTGTGAATCCCT  95 44
JH254_RS06250 1310698 .. 1310715 + -12.7  -4.38203   TCCGGATGTGACAAA             GGCGACC CCGG GGTCGCC              TTTATTCATTCTGTG  95 48
        yqhD 1314008 .. 1314052 + -13.4   -2.7185   GCAGGCCCGGTTGCA CCAGGGGGC-CCGAACCCGCC AGCA GGCGGGGACGCTGCCCCCTGA TCGTTGCAAAATGGT  75 64
JH254_RS06275 NONE
        pntB 1317522 .. 1317537 + -11.8  -5.24129   CGGATGAGACAAAAA              GGGGGC TTCG GCCCCC               TTTTTTATGACCAGA 100 49
JH254_RS06285 NONE
JH254_RS06290 1319862 .. 1319880 +   -16  -3.90559   TCGGCCATAAAAAAA             CCGGAGCC AGT GGCTCCGG             TTCTTCATTGTTCGT 100 57
        rluD 1321812 .. 1321847 + -24.8  -4.34402   CTCCATGATCTGATG    CGGGGCCCCTTGACTG GTTG CAGCCAAGGGGCCCCG     TTTTCATATGAACGA 100 82
        pgeF 1322618 .. 1322647 + -11.4  -3.08464   GGAAAAATAGCCGAA       GAGGCGCTCGCG AGTGGC CGCAAGTGCCTC        TTCACTCCCTGGTGA  71 31
        clpB 1325456 .. 1325474 + -11.7  -5.61596   ATTGTCGATGAAAAA             CGCAGGC CTCGT GCCTGCG             TTTTTTTATGGGCGT 100 45
JH254_RS06320 NONE
JH254_RS06325 1327963 .. 1327993 + -14.7  -2.66899   GGCCACTTGCCTGTC      GGCATCCCCGCAGC AATG GCCGCGGGG-TGCC       CTTGGTTCCTTACAG  78 220
        asnC 1329699 .. 1329718 +  -7.8   -3.1247   CTGCGGGATAGGGCA            CCCTGAAC GGTG GATCAGGG             TTCGATATAGGGGAT  57 113
JH254_RS06350 1332015 .. 1332040 + -19.1  -2.87564   GGCGGGCCGCCATGA         CATGAGGCGCC TTTG GGCGCCTCATG          TGTGTGAACGGCTCA  93 46
JH254_RS06360 1332841 .. 1332856 +  -8.2  -4.77757   CGGTGAGCAATCAAA              CCGGCT TTAT GGCCGG               TTTTGCTTTTTGGGG  85 50
JH254_RS06365 NONE
JH254_RS06370 NONE
JH254_RS06375 1336294 .. 1336332 + -30.4  -3.53444   TAGAAGGGATAAATG   ACAGAGGGGCGGCCCGTC GAT GACGGGCCGCCCCTCTGG   TTTCCGACAGAATCG 100 38
        msrP NONE
JH254_RS06390 1338977 .. 1338993 +  -9.4  -5.20216   ACGCCCATAGCAAAA              GAGGCC TATTC GGCCTC              TTTTTTGGTGATCTC  95 31
JH254_RS06400 NONE
JH254_RS06405 1340374 .. 1340393 +  -5.6  -2.54896   ATCAACGAATGACAC            CCTCGCAA CCGA TGGCGGGG             TGGGTTGAATGAGGC  46 29
JH254_RS06410 1341750 .. 1341771 + -15.1   -4.3739   CCAGGGTCGAGTGAC           GGGGCTCCC CGTC GGGGGCCCC            TTTTGTGCCGCCGTG 100 27
JH254_RS06415 1342417 .. 1342435 + -13.1  -5.14163   ACCGCGATAAGAAAA             CGGCGCC TTGAT GGCGCCG             TTTTTGTTGCTCACT 100 131
JH254_RS06430 1348434 .. 1348452 +   -16   -4.0641   CACATAGAAAAGAAA             GAGGGGCC GGA GGCCCCTC             TTTGTATGGATGGGA 100 60
        murB NONE
        birA 1352627 .. 1352658 + -23.2  -2.89564   CTCATGACGACTGAA      TGAAAGAGGGGGCC TGCG GGCCCCCTCTTTCA       TGTATGCACTGCGAC 100 50
JH254_RS06460 NONE
JH254_RS06465 NONE
         tuf 1355461 .. 1355477 + -12.3  -4.30719   CATAAATAAAGCAAA              GCCCCTA TAA TAGGGGC              TTTCTTATGCAGGGG  90 51
JH254_RS06475 1355568 .. 1355586 +  -2.3  -4.74917   CCGCCCCTGCCATAT             ACCTCGT CTCGT ACGGGGC             TTTTGTGTCTTTGGT  69 29
        secE NONE
        nusG 1356586 .. 1356618 + -15.8  -4.67607   GTTTAACGGTTGTCA     GGGGCAGCG-ATTAT CTCT ATAATTCGCTGCCCC      TTTATTTGTTGGGGA 100 54
        rplK NONE
        rplA 1357840 .. 1357875 + -15.8  -2.61467   AATTGATGGGTTTTA    CAAGGCGCAAAATT-TA ATC TATAATTTTGCGCCTTG    ATTGGTTGGGGGTTT  82 39
        rplJ 1358589 .. 1358600 +  -5.8  -3.54626   TGCTGCTTGATTCTC                GCCT ATCT AGGC                 TGTTTGAGTTTATTC  58 31
        rplL 1359039 .. 1359064 + -16.3  -4.64766   GATAAAACAGGCTAA         GGCTGGTGAAT CTTT ATTCACCAGCC          TTTTTGCGCTGTAGA 100 64
        rpoB 1363250 .. 1363265 +  -6.2  -3.63569   GAGCTGGACGAAGAG              TAAGAG CTCG CTCTTA               TTGTTCGAGAATTGA  58 23
        rpoC 1367672 .. 1367690 +   -16  -6.09196   AGCAGTGATGAGAAA             GGGCCCCT TCA AGGGGCCC             TTTTTTTATTTTCCA 100 49
JH254_RS06520 NONE
JH254_RS06525 1368988 .. 1369005 + -12.7  -4.26188   TATTTCATTGGAAAA             GCCCCTC CCAG GAGGGGC              TTTTGCGTCTGTGAG  93 44
        tusD 1369426 .. 1369442 +  -6.5  -3.28712   AAGCCGCACTGACCG              CTGATCG TTT CGTTCAG              TTCTAGGGGGACAAA  56 3
        tusC NONE
        tusB 1370218 .. 1370241 +  -4.4  -4.60924   AGGGCATAAAATTTC          GCGTCCCCGT ATCT GCGGGGAGGA           TTTTTCACACGTTTA  71 143
        rpsL NONE
        rpsG 1371225 .. 1371254 +  -8.5  -4.04174   TCCGCTGGTAATCCG       CTTGCGCAGGGTC TTCT GACTCTGCGCACC        TTTAATTATCTGGGG  73 30
        fusA 1373412 .. 1373433 + -15.9  -3.59979   AGTAATTTAAGATTC           CCCGCCTAC GACG GTAGGCGGG            TTTAACCTAGAAGGA  91 36
         tuf 1374667 .. 1374686 +   -15  -4.67038   TATGCACTCATGAAA            GGGGTGGC TTCG GCCACCCC             TTTTACTTTTGGGGC 100 52
        gmhB 1375589 .. 1375605 +  -6.7  -4.26589   TCACAGCATCGAGCA              TCAAAAA CAA TTTTTGA              TTTTCAATGTCTGAT  71 318
JH254_RS06570 1377282 .. 1377292 +  -5.4  -3.53811   GTTCACACAGATTGC                 CTTG ATT CAAG                 TTTAGAGACAGTACA  54 66
JH254_RS06575 NONE
JH254_RS06580 1377496 .. 1377546 +  -9.9  -3.59627   GTACTGTATTTGTCA GAAGACAAAGCCATGAGTTGAAC ATGTC GTTCAATGTATGCCTTTGACTTC TTTACGAAGTTTGCT  72 45
JH254_RS06590 1382406 .. 1382417 +  -2.2  -4.49756   TCCACCTCGCCTTTT                GATG TGAA CGTC                 TTTTGATGTTTGGCG  63 220
JH254_RS06595 1383036 .. 1383067 + -23.2  -3.90291   CGCCAGGCATAACAA      CAAGCCCGAACAGG TGCA CCTGTTCGGGCTTG       TTTCATTAGGCGGAT 100 73
JH254_RS06610 1386944 .. 1386962 + -11.7  -5.11063   CGCCGCCATAAGAAA             GGCCTCC CTTGC GGAGGCC             TTTTTGTTGGCTCAT 100 55
JH254_RS06635 1393566 .. 1393602 + -26.1  -2.54098   GGCGCCCGTTCCCGA    TAACCAAGAGGCCACCC CTG GGGTGGCCTCTTGGTTG    GTGTTCATTGCCCGG 100 48
JH254_RS06650 1397917 .. 1397963 + -10.9  -3.62644   CTTCCAGCCGGTGTC GTCCGCATCGTTCCAGTCCACC GAGC GGTGGA-TGGGGGGATGCAGGC TTATCTGGTTGTGGC  73 355
        sohB 1400787 .. 1400811 + -21.5   -5.8187   GCAAAGGACTAAAAA          GAGAGCCGGGC ATT GCCCGGCTCTC          TTTTTTTATTGCGTC 100 192
        topA 1405199 .. 1405220 + -12.3    -4.258   CACGGCATGATGAAA           GAGGCCCCT TGCG AGGGGCTTC            TTTGTTGGTGGATGG  90 54
JH254_RS06680 1405915 .. 1405935 + -15.5  -2.79831   TCGTCAAAAACAGCA            GAAGCGCCA TTG TGGCGCTTC            TGTCATGGGGCTTGC  82 484
JH254_RS06740 1421452 .. 1421465 +  -9.5  -3.07227   CGTCATCTGACGGCG               GGGCC CTGG GGCCC                TCTCTCGTTTCATCG  66 87
JH254_RS06745 1422176 .. 1422191 +  -2.4  -2.96235   GCCAGGGCGGGCTGT              CGATGC CCAT GCGCCG               TGTCATTCATCTATC  41 44
        arsB NONE
        arsC NONE
JH254_RS06760 1424746 .. 1424762 + -13.7  -4.72272   GACTTGCAGTAAAAA              GAGGGCC TTG GGCCCTC              TTTTTCATGGGCGCC 100 104
JH254_RS06765 1425253 .. 1425272 +    -2  -3.19048   TATCCCTGATCTCGA            GATCCAAC TCTG GTTGGCAC             CTTTATTGCTTCAAG  42 85
        fliE NONE
        fliF NONE
        fliG NONE
JH254_RS06785 NONE
        fliI NONE
        fliJ NONE
JH254_RS06800 NONE
        fliL NONE
        fliM 1434844 .. 1434859 + -10.4  -3.02511   AACACCCTGATTGAT              CCTCCC CCAG GGGAGG               TGTTGCAACACTGAG  67 27
        fliN NONE
        fliO NONE
        fliP 1436426 .. 1436462 +  -5.2  -3.48884   GCAGACCCTCCCCCT   GG-CTCTCCCCTTCACTC GGG GAG-GAAGCGAAGAGGCC   TCTCTTTCTTTCGAA  54 47
        fliQ 1436850 .. 1436887 +  -3.3  -2.79796   GGCAGAACGGGGCCT   GCGTC-CTCCCGTTGG CTTGCCC CTGCCGGGAGTGCCGC   TGTCATGACCTACAC  41 75
        fliR NONE
        flhB 1439051 .. 1439067 + -11.5  -3.14211   CGCCCCATGGCCTGG              GCTGGCC TTT GGCCGGC              TTGGTGAAGGCAGCT  71 182
        flhA NONE
        flhF NONE
JH254_RS06855 NONE
JH254_RS06860 1444509 .. 1444522 +  -5.9  -3.34517   GCATCATGTAAGTGA               GCCGT CTTG GCGGC                TATTTAGGAGGAACT  54 107
        cheY NONE
JH254_RS06870 NONE
JH254_RS06875 NONE
JH254_RS06880 NONE
JH254_RS06885 NONE
JH254_RS06890 NONE
JH254_RS06895 NONE
JH254_RS06900 1452340 .. 1452351 +  -7.2  -3.14564   TTATTGCTAATTTTA                CCCG TTGA CGGG                 TTCATACAAGGATCA  57 63
JH254_RS06905 NONE
JH254_RS06910 1453329 .. 1453352 + -19.6   -4.1891   GCTGACGGATGTGTC          GCGGGGAGGC CGGT GCCTCCCCGC           TTTCTGTTCGACCCG 100 36
        ccmA NONE
        ccmB 1454838 .. 1454849 +    -3  -3.73072   CGCTGCGGGTGAGTG                TCAA CTGA TTGA                 TTTGGTGAAAAGATT  53 18
JH254_RS06925 NONE
        ccmD NONE
        ccmE 1456483 .. 1456498 +  -2.5  -3.92373   ATTCACTTCTTTATA              CC-GCC AAATC GGCAGG              TTTCTCCGTGCAATC  54 59
JH254_RS06940 NONE
JH254_RS06945 NONE
JH254_RS06950 NONE
        ccmI 1460770 .. 1460797 +  -6.8   -3.0281   GCCCTCTAATACGCT        TTTGGCCCACCC CTTG GGGTGGGCCCCC         TGTATAATTCATATC  53 32
JH254_RS06960 1461726 .. 1461745 + -16.4  -4.07568   TCGACCATAAAAAAA            CGCCCCGC AAGT GCGGGGCG             TTTTGGCAAGAAAGG 100 97
JH254_RS06970 1463001 .. 1463029 + -16.1  -3.85698   GCATCCATACCATGC        AAAAAGGGGAGCC ACT GGCTCCCCTTTTC        TTTGTGCCCACGACA 100 45
JH254_RS06980 NONE
JH254_RS06985 1466779 .. 1466804 + -13.3   -4.7254   ACGGTCATCGGCATA         AAGAGGGAGGC ATGA GCCTCCCTCTC          TTTTTGCTCCGCCAT 100 45
        pdxH NONE
JH254_RS06995 1468558 .. 1468576 + -14.6  -5.31877   CATAGATCCAAAAAA             GAGAGGCC AGT GGCCTCTC             TTTTTTGTGGTAAGT 100 69
JH254_RS07020 1473308 .. 1473324 +  -9.4   -4.7373   CCCATCCATGAAAAA              GGACCC TTAGC GGGTCC              TTTTTCATGCCATGC  86 48
JH254_RS07030 1474546 .. 1474565 + -12.2  -3.02511   GCAGGGCATAAAAAA            GCCACTTC GCGG GAAGTGGC             TCTTCAACACATCGG  73 90
JH254_RS07055 NONE
JH254_RS07060 1477708 .. 1477725 + -14.1  -4.00782   GATGGGTTGTGACAA             GGGGCGC CGTG GCGCCCC              TTTGTGATCGTCTCG  95 46
         udp 1481295 .. 1481327 +   -12  -3.88583   GAGTACCGAGTGGGG     GGTGGGGGCCGTTGC GAAA GCG-CGGCCCCTATC      TTTATCCGCCGTTTG  85 60
        rihA NONE
JH254_RS07095 1483790 .. 1483813 + -19.6  -3.58726   AGGCCAGACAAGAAA          GGGGCCAGCC GCAA GGCTGGCCCC           TTCTCTATGGGAGGC 100 66
JH254_RS07115 1487333 .. 1487359 + -19.5  -4.18018   GACATCATGCAAACA         GGCCACCTCCC TGCCC GGGAGGTGGCC         TTTTACATGGGCCCG 100 90
JH254_RS07150 NONE
JH254_RS07155 1495830 .. 1495848 +  -3.8  -2.84732   GTGACTGCCAATCGA             CACATTTC AGG GTGATGTG             TCTGGTCGATTTGAG  43 11
JH254_RS07160 1496421 .. 1496434 +  -2.3  -5.06816   ACACGGGTTGGTTTT               CGAGT TTTG ACACG                TTTTTCTTACAGGGT  75 86
JH254_RS07165 1497020 .. 1497030 +    -4  -2.55909   TTCTGGCACGGTGAC                 TACA TTA TGTA                 ATATTGTGAGATTTT  41 27
JH254_RS07170 1497809 .. 1497823 +  -2.1  -4.26351   TTCATTTGAAAAGAG               GTCTA AGCAA TAGGC               TTTATTGCGTTGATA  62 515
        dcuC 1500559 .. 1500586 + -14.8  -3.90588   TGTTTATGTAACCGG        GCGGCGGACGGC ACGA GCTGTCCGCCCC         TTTCATTCGGCCGTC  95 30
JH254_RS07190 1501802 .. 1501821 +   -15   -5.4251   TAAGGACAAGCAAAA            CGGGAGGC CATC GCCTCCCG             TTTTTTATGTGTCGC 100 49
JH254_RS07210 1506593 .. 1506611 +  -4.4  -4.08216   GGAGTAGTCAAAACG             CACCGCCC CCA GCACGGTG             TTTTCCGGCACCTGG  61 349
        bioB NONE
        bioF 1510948 .. 1510966 +  -8.8  -3.61178   CGACGAGAGAGGGGG             CGCCCATG GTG CATGAGCG             TTTCCAGTCGGTGGA  68 10
        bioC 1511790 .. 1511808 +  -7.4  -3.57971   ACCCACCCCTTCAGC             GGCAGG ACGCGCG CCTGCC             TTTCACCATGGATAT  63 59
        bioD NONE
        htpX 1513553 .. 1513571 +   -16  -4.27316   GTCATCTAAAGAAAA             CGGCTGCC TCG GGCAGCCG             TTTTGCATTCCGGGG 100 47
JH254_RS07255 NONE
        nifJ 1521011 .. 1521027 + -15.1  -5.41787   TCTGCATAAAACGAA              GCGGGCC ACT GGCCCGC              TTTTTGTATTTTTTA 100 54
JH254_RS07265 1521910 .. 1521925 +  -4.6  -2.53581   CCCTCAACCACTCCT              GTGGGC AGCG GCCCAA               TCGCTTGCCGGTCTC  43 304
JH254_RS07290 1526506 .. 1526526 + -15.4  -3.88232   CCCGTCATGCAAAAA            GCCCGGGC AGCAG GCCCGGGC            TTCTTGTCTGGCCCC  95 58
JH254_RS07305 1531225 .. 1531239 +  -8.5   -5.0538   ATGGAGATGAAAAAA               CCGCC GTGAA GGCGG               TTTTTTGCAATCAGG  90 161
JH254_RS07315 1532851 .. 1532870 + -10.6  -2.92817   CATCTTGTCTCCATC            CCGGGGCG TCCT CGCCCCCG             CTCTTTTCTCCTTAT  67 88
JH254_RS07320 NONE
JH254_RS07325 1537906 .. 1537936 + -24.2  -3.25823   ATGACCCTCCATGAA       CAGAAAGGCCCCTG TCA CAGGGGCCTTTCTG       TTGGTGTGCAACCCG 100 54
JH254_RS07355 NONE
JH254_RS07360 NONE
JH254_RS07365 1546128 .. 1546144 +  -9.4   -5.1861   TTTGCCCATAAAAAA              GCCACC CGGGA GGTGGC              TTTTTTCATGCTGCC  95 50
JH254_RS07375 1548203 .. 1548230 +   -20   -2.6472   AGCCGACATCATAAA        GAAGAGGGCACC CCAG GGTGCCCTCTTC         TCATGTGGGGTGTTC  95 39
JH254_RS07400 1552935 .. 1552946 +  -7.2  -3.39327   CCACATTCCAGATAG                CGGC ACGC GCCG                 TTGTCCATATCAGCC  61 37
JH254_RS07405 1553097 .. 1553135 + -18.5  -3.69447   GCCCGCTCCAGTCTT  CACACAAAAAGCCCACTC CTGC GAGTGGGCTTTTTGT-TG   TCTGTTTTTTGATGC 100 31
JH254_RS07415 1554759 .. 1554779 +  -8.1  -2.59431   ATGGCCCCCCGCCAT            CCGGACAGG GCA CCCGGCCGG            TGGATTGTCAGCGCC  56 42
JH254_RS07420 1555660 .. 1555670 +  -6.8  -2.90075   GAGGTCGAAGTTGTC                 GCCA AGA TGGC                 TCTGGTTGCCGAGCA  50 356
JH254_RS07430 1556430 .. 1556447 + -12.7  -4.88736   AGAAGAATGTGAAAA             GGGACGC CATG GCGTCCC              TTTTTGTGCCTGATG 100 90
JH254_RS07440 1559269 .. 1559293 + -12.9   -5.5074   CAGAAATCAGAAAAA          GGCCCGTAC CCACCCA GTACGGGCC          TTTTTTGTTGGATTG 100 196
        thrA NONE
        thrB NONE
        thrC 1564105 .. 1564132 + -16.4  -5.37043   ATGAGACGCTGACGA        TCCCCCGCTTTT TCGC GAAAGCGGGGGA         TTTTTTATGTCCGGT 100 47
JH254_RS07460 1564818 .. 1564832 +  -2.7  -4.50058   TCACAGCGCAGCCCA               CGGCG CAACT CCCCG               TTTTGGTTATGCCTC  64 214
JH254_RS07465 1565415 .. 1565432 + -11.3  -4.66833   CCATCCAATAAAAAA             CCATCCC GGGC GGGATGG              TTTTTGGACTTCCAA  95 61
JH254_RS07480 1569786 .. 1569813 +   -20  -3.28447   GGTTGAGGCAGTGAC        GAGAAAGGGGCC CTGG GGCCCCTTTCTC         TGTTGTGATGGGTGG 100 68
JH254_RS07490 1572496 .. 1572529 + -11.7  -3.09273   ACCCAAGTAAGCCGC     ATGCCATGGTGTGGC GCCC GCCACATCATGGCCC      TATCTATTGAGAGCC  71 31
JH254_RS07500 NONE
JH254_RS07505 NONE
JH254_RS07510 1575359 .. 1575371 + -10.5  -4.54047   TACTGGGAGCCCTTG                GCGGC ATC GCCGC                TTTTCTATACACTGC  93 88
JH254_RS07515 1576837 .. 1576854 +  -8.4  -2.87132   GTGAGCGATCGGACG             GCCAGG CTGAAC CCTGGC              TGTATGACGCCCCCC  57 68
JH254_RS07520 NONE
JH254_RS07525 1578977 .. 1578994 + -14.1  -5.24531   GCCCGAGACAAGCAA             GCCCCGC ATCG GCGGGGC              TTTTTTGTGGGCGGT 100 48
JH254_RS07545 1583526 .. 1583551 + -13.3  -5.26316   AATGCCATAGAAAAA         GAGAGGGTTGC CCAG GCCACCCTCTC          TTTTTTCTGCCCTGC 100 75
JH254_RS07555 1586372 .. 1586401 + -10.7  -4.67353   ACGTTGAGATGATGA       AAAAGAGGCCACC TTCG GGTGGCCTCTCTC        TTTTTGCCTGCGTAC  93 57
JH254_RS07560 1587245 .. 1587263 + -14.6  -5.61596   GGCCGGCTCACGCAG             GCCATGGC AGT GCCATGGC             TTTTTTTATGCCCGT 100 44
JH254_RS07645 1606441 .. 1606464 +   -16  -5.41143   GCGCATAATGAAAAA          CCACCGCCCT GTTC GGGGCGGTGG           TTTTTTTGCGCAGTG 100 70
         icd 1609259 .. 1609277 + -13.1  -5.60993   CGTTGAAATGCAAAA             CCGGCGC CATGA GCGCCGG             TTTTTTTATGGAGGA 100 48
        dsdC 1612560 .. 1612601 +  -3.1   -2.8055   ATGGTGTCAGCGCGC TGCCGGATGGTATAAAAACA TTA TGTTGTTAT-CCAATGGGCA TGCTATTCTCAAATC  41 275
JH254_RS07675 1613088 .. 1613112 + -15.1  -4.19577   GGATCCGATTCTCGA          TAATGCCGCCT GCA GGGCGGCATTA          TTATTTTCAGAGTTC 100 46
JH254_RS07715 1624767 .. 1624799 +  -8.4  -2.55015   GGATCTCGTCCCCCG     GGTG-GACCGCCAGG GTGA CCTGGCCGTCGCAGC      TCACTTGCATGGCGT  53 169
        grpE 1626390 .. 1626407 + -14.1  -5.12068   CGCTGTTCTCACCAA             GCCCGCC GCTT GGCGGGC              TTTTTGTTGGATGTG 100 44
        dnaK 1628584 .. 1628628 +  -7.8  -3.08371   GACGACAAGAAGTAA GCCCGACCCGGATGGGCGAAG TCCG CTTCGCCCAT-CGGCTCAGAA TCTGTTCACGGTCTG  57 26
        dnaJ 1630010 .. 1630028 + -13.1  -5.93809   ACCCGCGTGACCCAA             GCCGGCC TTCAT GGCCGGC             TTTTTTTTGTCCGGG 100 46
JH254_RS07740 NONE
JH254_RS07745 1632802 .. 1632843 +  -6.5  -2.68434   TGCGATCAGGCGCAG ACGGCTGTTGATCTGCGGCT AGA AGCC-CGGCTCGACAGCCCC TACTCTCATGTGACA  50 15
JH254_RS07750 NONE
JH254_RS07755 NONE
JH254_RS07760 1636742 .. 1636763 + -18.7  -4.91109   CTTTCCTGTGAAAAA           GCCCCGCCG GATC CGGCGGGGC            TTTTTGTGCTGCGCC 100 54
JH254_RS07785 NONE
JH254_RS07790 NONE
JH254_RS07795 NONE
JH254_RS07800 NONE
JH254_RS07805 1645468 .. 1645487 +   -15  -4.16943   AGTCAGAGGTAAACA            CAGGGGGC CAAT GCCCCCTG             TTTTCGGGTATCACA 100 29
JH254_RS07815 NONE
JH254_RS07820 1651273 .. 1651291 +   -16  -5.52986   AAGCAGACAACAAAA             CGGCGGGT TCA ACCCGCCG             TTTTTTTACTGCCCT 100 60
JH254_RS07860 1661876 .. 1661900 + -17.1  -2.79098   GGTACCATGATGTAA          AGAGGCCCCGC CGT GCGGGGCCTCG          TCGTTCATGGCTCGC  87 42
         azu 1663726 .. 1663742 + -13.7  -5.45802   CCAGCACAAACAAAA              GCCGGGA GGG TCCCGGC              TTTTTGTTTTGACCC 100 61
JH254_RS07925 1676339 .. 1676377 + -16.8  -4.64766   ACCGTTTATTTCTTA   CTATAGGGGCAGGGGAGT GAG ACTTCTCTGCCCCTGTTG   TTTTTGGCATATAAG 100 51
JH254_RS07945 1683471 .. 1683489 + -13.1  -3.53444   GAGCTTGCCACGTCG             GGGCCGG TGTAC CCGGCCC             TTTCAGCGCGCCTAA  79 212
         asd 1685345 .. 1685366 + -15.9  -5.04601   CCTGTCCGTAAAAAA           GCGGCATCC CTTG GGATGCCGC            TTTTTAATTTATCCA 100 102
        clpS NONE
        clpA 1688498 .. 1688517 +  -9.2  -4.26871   GGAAATGACAAAAAA            CCCCAACC GAGA GGCTGGGG             TTTCTTGCTGAATTC  79 55
JH254_RS07990 1690963 .. 1690982 +  -9.2  -2.71712   AGAGCGATATCTCCC            GCGACAGC GGTT GCTGGCGC             ATTTGCAGACGAAGC  57 255
         lrp 1695058 .. 1695084 + -16.7  -3.79678   GAGTCACGATAGTCA         GAAACGAGCGG CCGGT CCGCTCGTTTC         TTCTTATAGAGAGTT 100 75
JH254_RS08015 1697724 .. 1697748 +   -15  -4.37092   CTCCTGTATCATTCT          GGCCATGCCC TCTGC GGGCGTGGCC          TTTTATCGAGAACCT 100 47
        lolA 1698413 .. 1698426 +  -2.3  -4.06687   CGTTACCGGCGTTAT               CGTCT GACC GGGCG                TTGTTTATGACCGGT  56 50
JH254_RS08025 1699885 .. 1699925 +  -3.2  -2.80959   GCAATAGTCCCTGTT C-GGG-CGGGGGGGCGGTCT GCT ACACTGCCCGTCTGACCCCG GTTGTCTTGGCCTTG  41 117
        serS 1701388 .. 1701413 + -17.7  -2.59431   GCTCGTTGCAGACGA         CAACGCCATGG CATG CCATGGCGTTG          TGCATTCTGGGCCCG  86 43
JH254_RS08035 NONE
        purF 1703608 .. 1703629 + -15.9  -3.71552   AGCGTGATGAAAAAA           GATGGGGGC CTAG GCCCCCATC            TTGTATTCGTGCACT 100 57
JH254_RS08055 1707902 .. 1707920 + -11.6  -2.85351   CGTTAGCATAGCCCC             CCCGGCGC CAG GCGCCGCG             TGTCGTATCAACAGA  69 74
JH254_RS08060 1708776 .. 1708804 + -10.4  -5.76633   TTTTGAGCGCAATCC       CCCGGCGACTGATG AGA CATCAG--GCCGGG       TTTTTTTATGTCTGG 100 96
        pspA NONE
        pspB NONE
        pspC 1717208 .. 1717235 + -14.1  -3.04537   AGCTCTAATCGTGCC        GGGCCGCGAGG ATACTG CCTCGCGGCCG         TCTCTCTGATGTGAT  80 33
JH254_RS08110 1718683 .. 1718695 +  -6.9  -2.78384   CACCTCGAATAACGG                GTGGG TGG CCCGC                TGTGCTCGAGGGGCG  51 29
JH254_RS08115 1719823 .. 1719846 + -14.6  -5.00616   TTACAATTGTCAAAA          GTAGCCGACC CCGG GGTCGGCTGC           TTTTTTGAGGGGCAA 100 76
JH254_RS08120 NONE
JH254_RS08125 1721140 .. 1721167 + -14.8  -2.88667   CGCCAACGCAGACAG        GGCCTGCCCGGT GAAA GCGGGGCAGGCC         TGCATTTTTGTGGGG  81 52
        tyrR 1722844 .. 1722882 +   -21   -3.1247   GCATTGAGCGCCTTG   CTGGCACGGCTGCGACGC CCG GTGACGCAGCCGTGCCAC   TTGCCTCTGGGGGCT 100 66
JH254_RS08135 1723663 .. 1723682 + -10.6  -3.87815   CGTCACGGCGCTGCT            GGCGCTGC TGGC GCTGCGCC             TTTATGCGGATCACA  79 144
JH254_RS08145 1725384 .. 1725407 +   -11  -3.16049   GATCCCGTGTGTGCC          ACCACTCTCC AGTG GGAGAGTGGC           TCTCTTCCCTTGTTG  71 97
JH254_RS08150 1726969 .. 1726993 + -19.3  -4.84017   GAGCACAGAAAGGAG          GTGGGGGCCTG GTG CAGGCCCCCGC          TTTTTGTCAGCGGTT 100 51
JH254_RS08165 1732986 .. 1733003 + -12.7  -5.56673   CACAGGGTGCAGCGA             GTCGGCC TTCG GGCCGAC              TTTTTTATTCTGCCT 100 52
JH254_RS08170 NONE
        guaB 1736110 .. 1736148 + -11.7    -5.626   CCCAACTACCGGATG   GGCTGATAAAACGGGGC TCTTC GCCCCGTTTTTCCACCC   TTTTTTTATCCCGTG 100 20
        guaA 1737850 .. 1737866 + -10.8  -5.27023   CAAAACTGTCAAAAA              GGCGCC CTTGA GGCGCC              TTTTCTTTTTCCAAT 100 86
JH254_RS08185 NONE
JH254_RS08190 NONE
JH254_RS08195 1741499 .. 1741540 + -20.3  -2.94912   CGTTCTCTTCCCACT CCCCCAGATATAGCCGGAC GATT GTCCGGCTATATCTGATGG  TATGTCGATTCGCGG 100 445
JH254_RS08225 1747002 .. 1747014 +  -9.1  -2.64099   CGTGGCCTGAGGCCT                GCCCA TCG TGGGC                CTTCTCGTGCACAGG  59 31
JH254_RS08230 1747986 .. 1748005 +   -15  -5.10461   ATTATGGTTTTTCCA            GCCGACCC CACG GGGTCGGC             TTTTTATTGCCTGCG 100 257
        sixA NONE
JH254_RS08245 1751811 .. 1751836 + -14.8  -3.72027   TGACCCTGGTCCCCC         TCATGCCCGC CCCTGT GCGGGCATGA          TTGTTGATGGCGCCT  95 53
JH254_RS08250 1752900 .. 1752918 + -11.7  -4.88407   AGTAGGATAAAAAAA             GACCGCC CTCGA GGCGGTC             TTTTTGGTTCGGTGC 100 36
JH254_RS08260 NONE
         fbp 1755989 .. 1756009 +   -14  -5.08601   AGCGTCCCTTCGTCA            CGGGAGCC GTCAA GGCTCCCG            TTTTTATTGGCGTGC 100 50
JH254_RS08280 1761881 .. 1761891 +    -4  -3.50437   GGAGGCGCTGCGTTA                 TGAA TAA TTCA                 TCTTCTGTTGTTACT  50 19
        lolD 1762611 .. 1762623 +  -6.9  -2.73875   AGTGAGCGGCATCAT                GGCGG AGG TCGCC                TGATGTTCAAGCCGC  51 10
        lolE 1763887 .. 1763902 + -11.8  -5.20333   CATGGATGTGATAAA              GGGCCC TGCG GGGCCC               TTTTTATTGTCACTC 100 45
         tig 1766885 .. 1766911 + -10.1  -5.07652   AACTGTTAAGTATAA         TGGCTCGTGTG ATCTC CACTCGGGCCA         TTTTATTTTAGGGAC 100 62
        clpP 1767562 .. 1767603 +  -3.6  -3.12895   CAGCGCGGCTGAGCA GGGTACCCCGTCCTGTTG TAAACT CAACAGGACGATCCATCC  TCTATTGATAAAACG  46 29
        clpX 1768921 .. 1768950 +  -5.8  -4.56597   GTCTGATTTTTAATC       ACAT-AAAGGGGC TTTTT GCCCCTTTCATGC       TTTTTACGGCCAAGG  75 43
         lon 1771514 .. 1771535 +  -6.5  -3.42056   AGTCGCAATGCGTGA           TGTGGCGCG GGTT TGCGCCAGA            TTGTCACTTGCAACT  58 142
        hupB 1771993 .. 1772014 + -13.7  -4.62203   ATACTGCTTGACCAA           GGCGCATCG CAAT CGGTGCGCC            TTTTCATTATTTACG  95 108
        ppiD 1774002 .. 1774020 + -14.6  -5.71712   CCCCAAGTGTGAAAA             CGGCTCCA TGA TGGAGCCG             TTTTTTTATCTGCAC 100 54
JH254_RS08360 1781459 .. 1781476 + -11.3   -4.3208   CAACACAAATGAAAA             TGGCAGC CGAA GCTGCCA              TTTTGCATTGTGCCG  89 55
JH254_RS08370 1783719 .. 1783731 +  -2.7  -3.00298   GCGAGCGTCCGAAAC                GTTTT GTG AAAGC                TGTCTGATTGGCAAG  42 6
JH254_RS08375 1784600 .. 1784615 +  -6.1  -4.72272   GGCAGAAACACAAAA              GGCAC CCGAGA GTGCC               TTTTTCGTGACAGCG  78 59
JH254_RS08420 1798378 .. 1798389 +  -2.2  -3.54424   GCTGCGCTGACGGCA                G-GGG TTG CCCAC                TTTGCCCGGGTGCCC  48 31
JH254_RS08425 1799624 .. 1799655 + -12.4  -3.86015   TAGCGGGAGGGGCCT      GCTCTGAGGACGC AGTCGGC GCGTCCTCAG-GC      TTTGTGAGCCAGGTG  83 38
JH254_RS08430 NONE
JH254_RS08435 NONE
        mmsB NONE
JH254_RS08445 1803506 .. 1803524 + -11.7  -4.56597   ATATACCCTCTCTGA             CGCCCCT CCTGC AGGGGCG             TTTTTGCAGGGGAAA  95 50
        arcD 1805296 .. 1805316 + -11.9  -5.24531   AATCGGCACAATAAA            GGGATGGCA AGA TGCCATCTC            TTTTTTATGGGCAAT 100 39
JH254_RS08455 1806208 .. 1806220 +  -6.2  -3.17075   GAACAGCTCGCGCTG                CGGC AGAAA GCCG                TTGCATTGAGGGGCC  52 71
         ffs 1806403 .. 1806423 +  -4.7  -4.14392   TTAAGATCAGTAACT            TAGCTTGTT GAA GGCAAGCTG            TTTGTGTATCACTGT  61 67
JH254_RS08465 1807980 .. 1807997 +  -9.1  -2.72568   CTTTAATATTCTGCT             GGAGTCC TTCG GGGCTCC              CTGTTTCATGTTGAG  59 334
JH254_RS08470 1808278 .. 1808292 +  -5.6   -2.5333   TTACTTGATGGAACG               GAGCGC CAA GGGCTC               ATATGTTGTCATTCC  46 33
JH254_RS08475 NONE
JH254_RS08480 1809085 .. 1809101 +  -9.5  -3.29325   GGCTTCTCTAGACAC              TTTCGAG CCT CTCGAAA              TATTGCTTCTCACAC  68 89
JH254_RS08490 1813562 .. 1813572 +  -5.4  -4.43669   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTTTTCAGT  70 238
        rluC 1823157 .. 1823174 + -12.7  -4.72272   GACAACCATGAAAAA             CGGGAGC CAAG GCTCCCG              TTTTTCATGGCAGAG 100 39
JH254_RS08530 NONE
        yceD NONE
        rpmF 1825484 .. 1825504 +  -3.3  -4.03234   CTACCGCGGTAAAAA            GGTAATC GCTTAAG GATTGCC            TTTGTCTACGCAAAC  58 13
        plsX NONE
JH254_RS08550 1827467 .. 1827477 +  -2.4  -2.74741   CGGCGGTTTTGCCTG                 GGGC TCT GCGC                 TGGTTCGCCTCTGAT  39 1
        fabD NONE
        fabG 1829363 .. 1829376 +  -2.3  -4.56775   ACACTACCCCAACCA               GACGC AATA GCGTA                TTTTTAAAGGAAAAT  65 147
        acpP 1829651 .. 1829672 + -15.9  -4.78848   GTTCCTGTTCTGAAA           GAAGCGGCC CAAG GGCCGCTTC            TTTTATGTTTACCCC 100 41
        fabF 1830980 .. 1831003 + -16.8  -5.24129   CTGGGCGAATGATAA          GGCCCGATAC GGCA GTATCGGGCC           TTTTTTATCGGAGGG 100 47
        pabC NONE
        mltG NONE
JH254_RS08585 NONE
        holB 1834386 .. 1834400 +  -2.8  -2.81297   GAACTGGCTCAATCG               CTGGTT ATA AACAAG               GTTGTCTATGTTACT  41 16
JH254_RS08595 1835195 .. 1835213 + -17.4   -4.3467   AGCGATAACAGACAA             CGCCCCGC ATA GCGGGGCG             TTTTACTATGACAAT 100 33
JH254_RS08600 1836538 .. 1836548 +  -2.6    -2.705   CGCGCCTCTGCTTTT                 TTTA TGT TAAA                 TGCTATCCTGTTGAT  38 46
JH254_RS08605 1837220 .. 1837248 +  -2.9  -3.72324   CATTGAACAGGTTGT        TGTCCCGTACCAG CTC CCGGGGCAGGGCA        TTCTTGATGCGACTA  53 280
JH254_RS08630 1843232 .. 1843250 +  -6.8  -2.80492   CTTTCCAACCACACC             GCATATTT ATT GAATATGC             TGATTGCTCGTCATC  51 137
JH254_RS08635 1844797 .. 1844812 +  -4.8  -3.20432   AAATCCGACACTGCG              CATAAT GTAT ATTATG               TTAAATTAAATATCT  47 128
JH254_RS08640 1846863 .. 1846876 +  -5.9  -3.07113   CGCAGCCTGCTGGAC               CGGCT GCTT GGCCG                TTAAATGAAGTGATC  52 8
        fabA 1847546 .. 1847572 + -15.2  -4.52047   GGTGAGCAGAGCAAC         GTAAAGGGGCCA CGA TGGCCCCTTTCC         TTTTGTAATGTAATG 100 52
        ccoN NONE
        ccoO NONE
JH254_RS08730 NONE
        ccoP 1871490 .. 1871519 + -18.1  -3.83921   CACGTGATTAATCAG       CAAAAAGCCTCGA CTCT TCGAGGCTTTTTG        TTATCTTGTGTTGGC 100 52
JH254_RS08740 1872074 .. 1872105 +  -6.4  -3.28712   ACGTTGAATCACGAA      GGAAGGGTGATCGG CACG CCGGTCAGCCGCCC       TTCTCCCCGACCCGG  54 34
        cadA 1874569 .. 1874599 +  -4.6  -3.41795   GCCGTCTGGCATCCT      CCCGG-GTGGCGG CACCTC TTGCCTCGCCGGG       TTATCATCCCCCTTT  52 44
        ccoS NONE
JH254_RS08755 1875493 .. 1875503 +  -3.2  -4.09243   ACACCCTCTGGATCG                 GGAT GGC GTCC                 TTTTGAAACCCTATC  58 9
JH254_RS08760 1876436 .. 1876449 +  -2.3  -4.56597   TAATAGCTAAAGAGT               TGCCA TCAT TGGCC                TTTTTGCCAAGGAGG  65 128
        uspE 1877452 .. 1877462 +    -4  -4.84017   GGGACATGGCTATAA                 TAAG CCG CTTA                 TTTTTGTCCCGGGTT  72 60
        ttcA 1878414 .. 1878430 + -13.7  -5.32944   GTCACCCACAGAAAA              GGAGCGC CAG GCGCTCC              TTTTTTCATTCTGGC 100 46
JH254_RS08785 1880877 .. 1880897 + -10.4  -4.31433   GCTACGCCTCTCAGA            CGGGTGCT CTTAT GGCACCCG            TTTCTTCTGAAAGTG  86 83
        rbsD 1881466 .. 1881478 +  -6.9  -3.47751   CAACTTGATCCTCTG                CGCCG GTG TGGCG                TTCTGAATTCTTCAA  58 7
        rbsA NONE
        rbsC NONE
        rbsB 1884927 .. 1884948 + -13.7  -4.04397   AACAAGTAAGTTGTT           GGGGGGAGG TTCG CCTCCCCTC            TCTTTTTCTGCCAGT  95 32
        rbsK NONE
JH254_RS08815 1886991 .. 1887019 + -20.4  -3.25147   AGTGTCAGCAAGCAG        CAGAAGGGCGGC CATGA GCCGCCCTTCTG        TGTATTGTCTCCTTG 100 40
JH254_RS08885 1903671 .. 1903700 +  -3.5  -2.79915   GGTCATTGAAATCGA       AGGCGCTGCGTC CCTCCTC GGC-CAGCGCCA       TCTCCTGCAATACCT  40 67
JH254_RS08895 1905891 .. 1905911 + -12.6  -4.07568   AGGCGGACAAAAAAA            GAGCGACC ATCAA GGTCGCTC            TTTTGCACCGGACAA  91 464
        ubiG NONE
JH254_RS08915 1910410 .. 1910431 + -10.2  -4.59853   CCCCGCAGCACACCA           GAGGGATC CCGGAC GATCCCTC            TTTTTACGGGCTTGG  93 149
        nrdA 1913165 .. 1913186 + -17.3  -3.46285   CGATCCGATGAACCG           GGCGGGAGC AGAA GCTCCCGCC            TTCCTGTTTCCCCTA  95 49
        nrdB NONE
JH254_RS08930 1914771 .. 1914792 + -17.3  -5.14965   GTCACGAGACAAAAA           GCCGCCGGA TTGC TCCGGCGGC            TTTTTTCATGGGGAT 100 62
JH254_RS08940 1916437 .. 1916454 + -14.1   -3.4072   CCCCTCAACAAGAAA             GGCGGCC CCAG GGCCGCC              TTGTCATGAAGGGTG  85 57
         cra 1921944 .. 1921965 +  -4.3  -5.41143   ACGCAGCCTGACGGG           CG-GCCTCCC CTT GAGGGGCGCG           TTTTTTTGGCGCATG  88 377
JH254_RS08965 1923460 .. 1923486 + -23.8  -3.90112   CGCCGCAAAGAGACA         CGCCCCGCCAAC CCA GTTGGCGGGGCG         TTTCATTGGCACGGG 100 65
JH254_RS08970 NONE
JH254_RS08975 1924778 .. 1924798 + -18.3  -4.96848   ACCAGGACAAAAAAA            GCCCCGCCA GAT TGGCGGGGC            TTTTTGTATCAACCG 100 46
JH254_RS08985 1927398 .. 1927415 + -12.7  -3.50492   AAAAACCATGAAAAA             GGCGACC CTGG GGTCGCC              TTGTGGTGTCTGGTG  79 55
        smrB 1930133 .. 1930152 + -10.7   -5.4505   AACGCCATAAAAAAA            CCACCGC CAGCTT GCGGTGG             TTTTTTCTTGGCGCC 100 72
JH254_RS09035 1935592 .. 1935607 + -11.8  -5.49234   CCCTTCAAGCCAGAA              GCGCCC CCAG GGGCGC               TTTTTTGTTGCCTCT 100 47
JH254_RS09060 1941664 .. 1941693 + -19.5  -3.76373   GGGCATTCCCAGTAA       CAACAAAGGCTCC CGCG GGAGCCTTTGTTG        TTTACATCTTCGCCA 100 131
JH254_RS09070 1943545 .. 1943562 +  -9.8  -5.28176   GGGTTTCCAATGTTT             GGGCCC TCTCCC GGGCCC              TTTTTTCTGCCTGCC 100 90
JH254_RS09075 NONE
JH254_RS09080 1945322 .. 1945341 +  -4.2  -3.57144   AATTTTGCAGGTTGA            TTGGAGAC AGCC GTCGCCAG             TTTGACGGTCAGGGC  53 290
JH254_RS09105 1951384 .. 1951403 +  -4.2  -3.63694   GAGATCACCAGCACG            TCGGCCTT GGCA AAGGCGGG             TTGTTCAAGCTGGGT  53 246
JH254_RS09120 1955006 .. 1955016 +  -6.8  -2.64616   TGATGCTCAAGACCA                 TGGC ACG GCCA                 TGGTGTCCATCGCAA  50 38
        rimI 1955836 .. 1955847 +  -7.2  -3.06133   TGCTCGCTGCCATCC                CCCG CATC CGGG                 TTGAGTCGCACCTTC  54 344
JH254_RS09135 1958126 .. 1958142 + -13.7  -4.72986   GCCTGATATGAAAAA              GCCGCTC ATG GAGCGGC              TTTTTGCTGGGCGTC 100 48
JH254_RS09160 1963218 .. 1963232 +    -7  -3.32022   ATAGTCATTGACCCT               GGCACC CGA GGAGCC               TTCATGTCTGCCGCC  56 37
JH254_RS09165 1963676 .. 1963692 +  -9.3  -3.07307   GGACTGCCCCTTCTC              GGCCAGG GGG CCCGGCC              TTCAGTGACGCTTTC  63 1
JH254_RS09170 1965481 .. 1965512 + -27.4  -2.52464   CATCAGGGCCTATAG      CCTGCCAGGGCGGC GCAT GCCGCCCTGGCAGG       TGCGTTACAACAAGC 100 26
JH254_RS09190 1970375 .. 1970391 + -11.5  -4.40003   GGGAGCTGACAAAAA              GGGGCCG ACA TGGCCCC              TTTCTGTTTATGCCG  91 32
JH254_RS09205 1973513 .. 1973540 + -12.1  -3.17075   GGAACGCAAAAACAA        CAAAGCAGGCG CCGGGA TGCCTGCTTTG         TTGCCTTCGGGGAGG  74 47
JH254_RS09210 1974313 .. 1974332 + -13.6  -3.94067   GAGCACCAAAAGCAA            GAGGAGGC CAGG GCCTCCTC             TTCTTGTCTCTGCTA  93 61
JH254_RS09230 1976807 .. 1976834 +   -12  -4.18018   AGGCGGCTTGCGCAA        CGGGCCCATC CCCCCTAA GGTGGGCCCG         TTTTCCCTGGCGCAC  87 133
JH254_RS09235 1977338 .. 1977361 +  -3.7  -2.79796   GACCCTCACCGGCAG          GCTGCCGCG CGTCAC CCCGGCACC           TCTCGTCAGCTGGCG  43 39
        chrA NONE
JH254_RS09245 1979674 .. 1979705 + -15.8  -2.62616   ACAGGGGGAGATAAA      AAAGCGGCGCCTCC GAAG GGAGGCGCCGCTGG       TCGTGTCGGGGATCA  82 52
         gap 1988123 .. 1988139 + -15.1   -5.1523   CGTAGCTTGAAAAAA              GGCGGCC AAT GGCCGCC              TTTTTGTATTCTGAA 100 58
JH254_RS09275 1989082 .. 1989103 + -15.9  -3.76641   GACGGATAAATTAAA           GAGGGCTCC CGCG GGAGCCCTC            TTTGCATCTTGCCAT 100 51
JH254_RS09285 1992464 .. 1992481 + -12.7  -4.24948   GACGGAAACGAAAAA             GCCCGCA TCGC TGCGGGC              TTTTCAATATGGTGG  93 46
JH254_RS09430 2007948 .. 2007959 +  -4.4  -3.64599   CAGCAGCAACAGCAG                TTGC TGTC GCAA                 TTTCGGGTCTAGTGC  54 2
JH254_RS09435 2009868 .. 2009893 + -20.5  -4.99638   GCTTTTCATAGGAAA         GCCCCGAGTGC CACG GCACTCGGGGC          TTTTTATATGGCTCT 100 60
JH254_RS09440 2010789 .. 2010806 + -14.1  -5.98781   CACATCAATGAAAAA             GCGCGCC AAAT GGCGCGC              TTTTTTTTCCTTGTC 100 157
JH254_RS09460 2013928 .. 2013938 +  -6.8  -3.31144   TGCCCAGAGCTCCCA                 TGCC AAG GGCA                 TTCTCCGCCTCCAGC  55 402
JH254_RS09475 2016555 .. 2016593 + -13.8  -3.25341   CTCGTCAAACACTGA   GTCCGGGGAGGGGTCGGG ACA TCTGACCCCTCCTGGCAC   TGTTCCTGTTCAAGT  81 26
JH254_RS09480 2017365 .. 2017379 +  -3.4  -2.61727   GGGGCTGGTAAAGAA               CCGCGC CAA GAGTGG               TCAGTTCTACTGGGT  40 426
JH254_RS09500 2023357 .. 2023375 + -17.4   -5.4833   ACGGTACAACCAACA             GCCGCCCC AAC GGGGCGGC             TTTTTTATTGCCTCG 100 52
JH254_RS09510 2028224 .. 2028268 +    -7  -3.09834   CAGGATCAGGGGAGC GAGCCTCCCCGCTGAC-CCCC GCCA GGGGCGTCAGTCGGCAGACAC TTCGATGGTCAGGTG  54 11
JH254_RS09520 2029544 .. 2029566 + -13.4  -2.91383   CCTATCTGAAATAAG           GGCGCCCG GTGATGA CGGGCGCC           TCTGTCAGTCGAAGT  77 27
JH254_RS09560 2043045 .. 2043062 + -14.1  -4.61873   GGGCTAAGCCCGCAA             GCCCCGC TCAG GCGGGGC              TTTTCATTTGTCCCC 100 34
JH254_RS09565 2044107 .. 2044119 +  -4.7  -2.71364   GCCCAGTTCGGTGAT                GCGGG CGG CCCCC                TGCTTGCGCACCTGA  44 105
JH254_RS09605 2052910 .. 2052932 + -13.4  -2.77658   TGAGTGGCCCCATGA           GCCCCTGCCA GGC TTGCAGGGGC           TCCTTACCTGTCATG  76 38
        gbpA 2054765 .. 2054785 + -18.3   -4.7497   TCAACATCAAACAAA            CGGGGAGCC CAT GGCTCCCCG            TTTTTCATCCATCCC 100 96
JH254_RS09650 2062096 .. 2062107 +  -2.2  -2.94232   CGGCCGCGAAGTCTA                CCTA AAAG TGGG                 GTTATTTGCAGCAAA  41 147
JH254_RS09655 NONE
JH254_RS09660 2063539 .. 2063553 + -12.8  -4.79955   GCAAAAAACGAAAAA               GGCGCC TGG GGCGCC               TTTTCTTATGCCTGT 100 51
JH254_RS09695 NONE
JH254_RS09700 2068727 .. 2068743 +  -9.4  -5.23316   GCGACCAAAAAAAAA              GCGGGA ATATA TCCCGC              TTTTTTCATGTCATC  95 145
JH254_RS09720 2073782 .. 2073815 + -17.7  -4.24623   GTCGTCCACGATGCA     TGACAAGAGGGAGGCT TCA AGCCTCCCTCTT-TCA     TTTGTGTCTATTTGC 100 46
JH254_RS09730 2075600 .. 2075630 + -19.2  -2.87344   TGCGGGTTGATGACA       TGACAACGTCCCTT CAA GAGGGACGTTGTCA       TGTCTGGCGGGAGTG  93 59
        fadI NONE
        fadJ 2091634 .. 2091659 + -20.5  -5.07486   GACGGCATGCATCGA         GCGAGGCGACC CCAA GGTCGCCTCGC          TTTTTGTTGGGCATA 100 49
JH254_RS09800 2092034 .. 2092061 + -17.2  -5.48787   TCTCGTTCATGCCGC        CAAATGCCAGTC TCAC GACTGGCATTTG         TTTTTTGTGTCTTCT 100 46
JH254_RS09805 NONE
JH254_RS09810 2093679 .. 2093696 + -12.7  -5.08601   TGTCTTCCTCTTCAA             GGACGCC CGAT GGCGTCC              TTTTTATTGCCATCG 100 49
JH254_RS09855 2105536 .. 2105569 +  -9.5  -2.98823   AACGGCTGGTGCTTC     CCCTGGACCCTGGCGG CCA CCGCCGGGGTG-AGCG     TCTGTCTGCGCCACG  65 243
JH254_RS09865 2107327 .. 2107340 +  -4.5  -2.68072   TCAGGACTGACACAA               GGCTG TCAG TAGCC                CTTCGTTATGCTGGG  43 31
JH254_RS09870 2107761 .. 2107777 + -15.1  -4.63218   AATCATGAAATGAAA              CGGGCCC ACA GGGCCCG              TTTTGTTGAACAGAA 100 78
JH254_RS09930 2123208 .. 2123240 +  -3.5  -3.58343   TTTTTCCGCGCTTTT     GGCATAATGCCCGCT TTTGC AGCGGG-AC-ATGCC     TTTGACCATCATCCA  52 59
JH254_RS09935 2125160 .. 2125172 +  -4.7  -2.70932   CACGGGAGTGAGTCC                GCCGC GCC GGGGC                TGATTGCACCCGGCC  43 30
        tsaB 2125964 .. 2125978 +    -7  -3.90318   GAATAGGCGGCAACG               GCTGCC CCG GGCTGC               TTTGTCGGATGATGA  66 35
JH254_RS09945 NONE
JH254_RS09950 2127546 .. 2127559 +  -2.3  -2.57132   GAGGCAACACAGTGA               GCGCA CAGG TGCGA                GTTATGCAGGAGAAG  38 190
        fadD 2129299 .. 2129315 + -10.1  -5.72622   TGTCGTTATGCAAAA              CCGTGGG ACA TCCACGG              TTTTTTCTTTCTGGA 100 70
         rnd 2130485 .. 2130503 + -14.6  -4.76041   TACGCAGTACGAGAA             GGGGAGTC CAT GACTCCCC             TTTTTCATGCCTGTG 100 45
JH254_RS09985 2134534 .. 2134559 +    -9  -5.06414   TAATGCTATGGAGTT         GGCTCGTCAT TTTTGC GTGACGGGCC          TTTTTATTGCCCCCA  91 63
         apt 2135223 .. 2135244 + -13.7  -3.66178   GCTTTCTGCCGCAAA           CCGGTGCCT GAAC GGGCACCGG            TTTGAAATTCAAGCG  84 74
        dnaX 2137918 .. 2137934 +  -7.2  -2.71712   AGATGAACCCACAGC              CCGGCG CTGGA TGCCGG              ATTTCAAGACGAGAG  53 111
JH254_RS10000 2138338 .. 2138358 + -16.9   -4.2349   GGGGAAAAATGAAAA            GGCCAGAGC CAA GCTCTGGCC            TTTTGCATGTCGGCA 100 77
JH254_RS10010 2140342 .. 2140363 + -14.5  -5.60993   CAATTCTGATAAAAA           CAAAGCGCC TGAT GGCGCTTTG            TTTTTTTATGGGCCC 100 43
JH254_RS10020 2143230 .. 2143246 + -13.7  -2.70932   TAGTGCCCGGCTCTT              GCCTCCC CTC GGGAGGC              TCGTTGGGGGAAAGC  75 74
JH254_RS10025 2143713 .. 2143732 + -13.6   -4.2828   CTGGTTGTTTTCAAA            GAGCAGGC TCCG GCCTGCTC             TTTTCATCCGTGACG  95 51
        hrpA NONE
JH254_RS10035 2148800 .. 2148835 +  -2.4  -3.36273   TATTCGCGCTCGTTT    TGCGAGGTGCTGACCG GTCG CAGTCAACACCATACA     TTCATCTTAAAAGAG  44 129
        rplY 2149171 .. 2149194 + -18.2  -4.85782   GAACTTTCCTGTGAA          GAGGCCACCC AATC GGGTGGCCTC           TTTGTTTTTACAGCA 100 49
JH254_RS10050 2153918 .. 2153936 +    -6  -3.48395   TCCTCCTTGTGGGGG             CCGGTA ATGGCGA TACCGG             TTCTCTCGCGCAGCT  55 410
JH254_RS10090 2162599 .. 2162615 +  -7.9  -2.87344   CGGCACGCTCTCCGC              CCTGCGC GAT GCCCAGG              TCTATGCGCAGCATC  54 250
        apbC 2166523 .. 2166542 + -10.7  -4.82667   AAGGGGGACGGATTT            GGGGTGG GCATGG CCACCCC             TTTTTCATATAATGG  95 54
         udk 2167258 .. 2167274 + -11.5  -5.53991   GTTGAGAGAAAACAA              GCCGGGT GAT GCCCGGC              TTTTTTTAATGAATC 100 36
         dcd 2167922 .. 2167941 + -13.6  -4.60797   GGCTTGTCTATGGAG            GAGGGTGC CAAG GCACCCTC             TTTTATATCTGGCAA  95 55
JH254_RS10120 2168410 .. 2168427 +  -3.4  -3.62046   TGTATCGATTTTCTC             TGCTTG GTTCGG CAAGCG              TTCTTGGCCAAATAA  50 73
JH254_RS10125 2169636 .. 2169654 +  -4.4  -2.89564   ACGGGCTTGGGCTCG             CCATAGCG CGT CGCCAGGG             TGTGTAGCCTGGCGA  44 476
JH254_RS10150 2174869 .. 2174891 + -13.4  -4.82901   GGCCGCAGCCAATGA           AAACGGGGCC CTG GGCCCCGTTG           TTTTTCTGACCGCCA 100 45
JH254_RS10195 NONE
JH254_RS10200 2183487 .. 2183512 + -20.5  -2.72049   GGCGGACAGCAATGA         CAACGGGGGGC TTGG GCCCCCCGTTG          TCATTGGCAGCTGTC 100 55
JH254_RS10215 2187217 .. 2187236 +   -15  -6.06723   GGTCGTCAGCACAGA            CAGGGCCC TGCG GGGCCCTG             TTTTTTTTTGCAGCA 100 44
JH254_RS10220 2188871 .. 2188886 + -10.4  -4.73388   GACAGACAACAAAAA              GGCTCC CGCG GGAGCC               TTTTTCATGAGCCTT  95 58
JH254_RS10230 2190700 .. 2190730 + -21.4  -2.62933   GCAGGCTTGGCGACA       TGAAAAAAGGCGCC AGA GGCGCCTTTTTTCA       TGGTGTCGGGGCTTA 100 42
JH254_RS10260 2197073 .. 2197085 +  -3.3  -2.94365   TCGAAGTTGAATTCG                CGAAG TAC CATCG                ATTTCTCCCGTCTGA  42 55
JH254_RS10265 2198956 .. 2198981 + -20.5  -3.40403   TGACTACAAAAAACA         GAGGCCCGGCA GCAA TGCCGGGCCTC          TTGTCATGAAGAGAA 100 38
JH254_RS10295 2208839 .. 2208857 + -11.7  -5.44198   TCCGTTTTTGTCGGA             GCCGGTC CTTGT GACCGGC             TTTTTATTGTTTCTT 100 47
JH254_RS10300 2210746 .. 2210765 + -16.4  -4.15044   TCGCATAACAAGCAG            GGCCCGCC AGAC GGCGGGCC             TTTATTACAACCGCG 100 54
        oppB NONE
        oppC NONE
JH254_RS10315 NONE
        oppF 2215135 .. 2215156 + -11.5  -4.67635   TGCTCCAAACGCGAA           CCCACTGCC TCCC GGCCGTGGG            TTTTGTCGTTTTGGG  95 414
JH254_RS10325 2216142 .. 2216159 + -12.7   -4.8048   ACGGTGCAGTAAAAA             GGGCTCC CTCG GGAGCCC              TTTTTCATGTCAGCA 100 41
JH254_RS10335 2218065 .. 2218084 + -16.4  -3.41051   TCAGGCATATGACAA            CGGCCCGC AGAA GCGGGCCG             TTGTCATGGGGGTCA  93 57
JH254_RS10355 2220829 .. 2220847 +  -3.7  -3.64259   CACCTGGAAGCGCTC             GGCCACC GCGTG GGAGGTC             TTCTTGACGATGGTT  53 264
JH254_RS10365 2222913 .. 2222932 + -16.4  -3.47078   TCGCTGCCATGAAAA            GGCCCCGC CAAT GCGGGGCC             TTGTCGTATCGGGTC  93 51
        hinT NONE
JH254_RS10380 NONE
JH254_RS10385 NONE
        lpoB NONE
JH254_RS10395 2228927 .. 2228937 +  -8.2   -3.1082   TGCCCGGCAACGGCC                 CGCG CGA CGCG                 TGTATTCAATGAATG  60 41
JH254_RS10400 2229842 .. 2229874 + -27.1  -3.78934   CGCGATGAGACAACA      CAAGGGCGGCGGGCC CCG GGCCTGCCGCCCTTG      TTCTTGTGGGGCAGG 100 44
JH254_RS10405 2230464 .. 2230474 +  -4.6  -3.70344   TTCACTTTTAGTGAA                 CGGC TAG GCTG                 TCTTGTTTCATTTTT  54 92
        secD NONE
        secF 2233433 .. 2233450 + -11.3  -4.78149   GCCCCGGGCAAAAAA             GGAAGGC GAAT GCCTTCC              TTTTTCCATTCTGCC 100 86
JH254_RS10420 2235262 .. 2235285 + -16.8  -5.71712   GGATCGGTTGTTCTC          TCCCCGCCAT GCCC ATGGCGGGGA           TTTTTTTATGTCAGA 100 46
JH254_RS10430 2237082 .. 2237116 + -18.7  -2.65766   TTCTGCTGGTTGCCT    CGAATGGGGGCTAGGC AAGT GCCTGGCCCCC-TTCG     TACTATCCGGTTTCA  91 91
JH254_RS10435 2238994 .. 2239009 + -10.4  -2.64155   CCTGCCCGCGAAGGT              GGTGGC TCTG GCCACC               TGGATTTCACGACGG  64 43
JH254_RS10440 2240920 .. 2240932 +  -4.7  -3.72576   GCGCTGCCACAGCGG                CCCCG ACG CGCGG                TTTGGTGGCCCGAAG  57 82
JH254_RS10445 2241615 .. 2241631 + -13.7  -4.19735   ACCGATTTCGTTTTA              GGGAGCC AAT GGCTCCC              TTTCGTTTTGAGGAA  95 53
JH254_RS10450 2242988 .. 2243005 + -11.3  -5.24129   TGCGAACATCAAGAA             GGAGAGG CTTG CCTCTCC              TTTTTTATGGCCGAC 100 59
JH254_RS10460 2244814 .. 2244831 + -12.7   -4.8667   AACGCCCCGTCACAA             GCCGACC TCGA GGTCGGC              TTTTTGTCGGGTGTG 100 69
JH254_RS10470 2248887 .. 2248908 + -17.3  -3.76224   GAAGAAGAGTGACAA           GAGGGGCGC CGCG GCGCCCCTC            TTTGCTGAGTGGGGA 100 46
        msrA 2252975 .. 2252998 + -19.6  -2.86271   GGCGTCATTGCATAC          CACGGGGGCC ATCA GGCCCCCGTG           TCATTGTGATGAAAA  95 41
JH254_RS10515 2256783 .. 2256804 +  -7.9  -3.41878   GCGCCCCCCCAGCGC           CGCCTTGCGC AGG GCGCC-GGCG           TTGTCGGTTGAAAAG  60 257
JH254_RS10525 NONE
JH254_RS10530 NONE
JH254_RS10535 NONE
JH254_RS10540 NONE
JH254_RS10545 2265015 .. 2265036 + -14.5   -4.1899   GATAGGGAAACAAAA           CGGCAGGAT AACT ATCCTGCCG            TTTTCAATGGGGTGA 100 36
JH254_RS10550 2265774 .. 2265787 +  -6.7  -3.21924   AACCGGATAACAAAA               CGGTA CCCC TACCG                TGTTATCCGGAGTCA  56 103
JH254_RS10555 NONE
JH254_RS10560 2268385 .. 2268402 +  -8.5   -3.6268   GGTTGCCAAAACGGT             GTTTGCT AAGG AGCAAAC              TTATGCTTTAAGTTA  66 391
JH254_RS10570 2270610 .. 2270623 +  -3.9  -3.30124   AGCGCCGTCAGACCA               GAAAA GAGA TTTTC                TTGTCCCGCATGGAG  48 369
JH254_RS10585 2273832 .. 2273857 +  -2.5   -3.3581   AACCACCGCGCATAA         GGGGCGT TACGGTAAATCC GCGCCCC          CTTTTTCACGCTGGT  44 79
JH254_RS10590 2274216 .. 2274237 + -15.9  -5.04601   GCCACTAAATTGAAA           GGCCTTCCC TATC GGGAAGGCC            TTTTTGCTTTCTGAC 100 37
JH254_RS10620 2281488 .. 2281510 +    -9  -3.46647   GTTGACCCTCCCCCT           GGGCCAAGGG TTA CCATAGGCCC           TCTTTCGTCAATGAG  66 57
JH254_RS10625 2281848 .. 2281862 +  -3.4  -3.84451   CGTCCGCCCCGTCAC               CACGGC TGA GTCGAG               TTTCCCTTTCCGGGC  53 17
JH254_RS10630 2282415 .. 2282440 + -20.5  -4.78764   CACGGTCAGGGAGGA         GGGCCGCCATC GCGA GATGGCGGCCC          TTTTTCGTCGATTTG 100 107
JH254_RS10635 2284823 .. 2284849 + -15.1  -4.74706   CAGCTTGTTACCAAA         CCCCGTTCCGG CAGCC CCGGATCGGGG         TTTTTGCATCTTGGC 100 61
JH254_RS10640 2286334 .. 2286362 + -21.1  -3.10958   TTCGGATGTGCCCCG        GACTCGCTCCTCC TTC GGGGGAGCGAGTC        TCATTTATTGCAGTA 100 53
JH254_RS10645 2288977 .. 2288994 + -14.1  -5.31275   TCACCCAATAAAAAA             CGGCGCC TTCG GGCGCCG              TTTTTTATGCTGGAC 100 44
JH254_RS10655 2290025 .. 2290040 + -11.8  -4.40237   GGCATCCATGAAAAA              CGGGCC TTCT GGCCCG               TTTTGCTATGTGATC  91 47
JH254_RS10670 NONE
JH254_RS10675 2294680 .. 2294699 +  -5.6  -2.52464   CACCTTGGCGGTGAT            GGC-GGGGG AGA CCCCGAGCC            TGCGTTCGGCGCAGG  45 449
JH254_RS10685 2296027 .. 2296054 +  -2.6  -4.52143   GCCAGTGGCGAGCGC        GGTGG-GGCGCTC GCC GAATCCCGCCACC        TTTGTTATATTTCGC  65 43
JH254_RS10690 2296739 .. 2296757 + -12.4  -5.76949   GATGTCAACGTGAAA             CGGGGCTT CTT GAGCCCCG             TTTTTTTTGCGCGTC 100 54
        tatA NONE
JH254_RS10705 2298531 .. 2298548 + -12.7   -3.1978   GAGATCGTGATGACA             CGGCAGG CTTG CCTGCCG              TCTTGCTCTGCCCCT  75 39
JH254_RS10710 2300256 .. 2300271 +  -3.9  -3.06796   GCATCAACAGCCTGG              CCGGG GTGGGA TCCGG               TTGGCTGGCATGGGG  45 126
JH254_RS10720 2302019 .. 2302044 +  -6.1  -5.60993   ACATGCTATTTGCGA         GGGGGTGACAT GCGA ATGTTGCCCCA          TTTTTTTATGCCCGC  93 393
        fabR NONE
JH254_RS10735 2304443 .. 2304455 +  -9.1  -3.73088   CTAGTCGGCCCTGGG                GGGAG TCT CTCCC                TTCTTCCTGGCGTCT  71 74
        ftsY 2307365 .. 2307382 + -12.7  -2.93382   AGCACGTGTTCCATA             CCCCGAC TCCG GTCGGGG              TATGTCACTATGAGA  75 74
        ftsE NONE
        ftsX 2309433 .. 2309453 +  -5.4  -5.85178   GCATGCTACTTTTCA            GGGGTC CTTTACTGT GACCCC            TTTTTTTTGACTGTT 100 298
        rpoH 2310488 .. 2310505 + -12.7  -5.45802   TCCTCCGGTAAGAAG             CAGGGCC TGAT GGCCCTG              TTTTTGTTTTGCGGG 100 46
         can NONE
        hutC 2311997 .. 2312014 + -12.7  -5.37345   ATTAAGCATTTAAAA             GCCCACC TCTC GGTGGGC              TTTTTTGTGCTTACA 100 53
JH254_RS10780 NONE
JH254_RS10785 NONE
JH254_RS10790 NONE
        hutH 2317603 .. 2317621 +   -16  -4.57516   GCAAACCATAAATAA             GACCGCCC ATG GGGCGGTC             TTTTCATTTCCGTCT 100 53
        csrD 2323121 .. 2323159 +  -5.9  -3.55761   GAAACAGCCCCCACA   TCGCCTTGCCACTGTAG ATGGG TTCCAGCGGCAAGCCGG   TTTCGGCACTGAATG  57 159
JH254_RS10820 NONE
JH254_RS10825 NONE
        pilO 2326133 .. 2326151 +  -5.9  -4.74504   GTTAAGCGGCATGTC             GGCGGGA CGGGA TCCCGCA             TTTTTGCCTTCCCAT  78 36
JH254_RS10835 NONE
        mshL NONE
JH254_RS10845 NONE
JH254_RS10850 NONE
JH254_RS10855 NONE
        mshE NONE
JH254_RS10865 NONE
JH254_RS10870 2334000 .. 2334011 +    -3  -5.71712   GGTGCTTCAAGTATT                TCAT TGAC ATGA                 TTTTTTTCTATCCGC  95 44
JH254_RS10875 NONE
JH254_RS10880 2335232 .. 2335249 + -12.7  -4.46775   GACTTTGAATGATGA             GCGAGGC TTCG GCCTCGC              TTTCTCTTTTCCCTG  95 41
JH254_RS10885 NONE
JH254_RS10890 NONE
JH254_RS10895 NONE
JH254_RS10900 2337741 .. 2337751 +  -5.4   -2.7634   TTTGCTTATACATCA                 TGGT TTC ACCA                 GTTTGGGCTGCAATT  47 62
JH254_RS10905 2341507 .. 2341524 +  -7.7  -3.18681   GACAGTTTGAGCGCT             TGCCCAT TGGG GTGGGCA              TTGGTAAAGTTAGCC  57 157
JH254_RS10910 2342627 .. 2342647 +  -8.2  -5.02074   TACGAATAAGACCCA            AAGCCGGC CGAGC GCCGGCTC            TTTTTTGACGACTCA  90 32
        mreC NONE
        mreD NONE
         maf 2344707 .. 2344718 +  -5.8   -2.5409   GTAATCCTCTCGTCA                GCAG TGCG CTGC                 TGAGTTACCCGTTGT  48 37
         rng NONE
JH254_RS10935 NONE
JH254_RS10940 2351111 .. 2351143 +  -7.5  -2.76261   CATGCCGGTGCTGCA      ACACGCCCGCCTGCT GTG AGCCCGCGGCCGTGG      ATTTAACCGTTACGA  54 7
        tldD 2352655 .. 2352673 + -13.1  -5.06414   ACACACCTTTGTAAA             CCCCGGC CCGGC GCCGGGG             TTTTTATTGGAACGC 100 45
JH254_RS10965 2356123 .. 2356150 + -14.8  -3.84451   GGGTGAGAAAGGAAA        GGGGCCGGCTCC GTGA GGAATCGGCCCC         TTTGCGTTTGCCCCC  95 55
JH254_RS10980 2358069 .. 2358088 +  -7.8  -2.91264   GACGTCAGGCAAGGA            GGCCGC CGTGAGTT GCGGCC             TGTCTGCATCGGGCG  56 74
        metH 2363927 .. 2363941 +  -5.6  -2.52543   CAGAGGCCGAACGCT               GGCTGG GGC CCAACC               TGCATTGAGCCCCGT  46 3
JH254_RS11000 2365165 .. 2365177 +  -6.9  -3.61398   TGAGTGCGGCACTCT                CGGGT TTT GCCCG                TTCTTGCAGAACCGC  60 106
        rimK 2366206 .. 2366221 + -11.8  -3.80018   GACAGGTAAACACAG              GGCGCC CTCG GGCGCC               TTGTTGCTATCTGGG  83 58
JH254_RS11020 2368789 .. 2368805 +  -3.6  -2.72344   GCGGACCGGGAAAAA              TTGCCC GTCCG GGGCCA              TAGTTAAACCTCACC  42 50
JH254_RS11025 2369596 .. 2369619 +  -5.2  -3.55444   GGGGAGGTTGTCCCG          TCCGGTTGTCC TTA GGGCG-CCGGG          TTTCCAGACTAGGGA  56 290
        thiC NONE
        thiE NONE
JH254_RS11040 NONE
        thiS 2374365 .. 2374391 + -12.3  -2.58243   CGCAGTCCCATCTTC        GAGCGCCCTGCC TTGC GGCGGGGC-CTC         ATCTCTTCTTATCGC  70 52
JH254_RS11050 NONE
        thiH 2376576 .. 2376592 +  -9.5  -3.29325   GGCTTCTCTAGACAC              TTTCGAG CCT CTCGAAA              TATTGCTTCTCACAC  68 142
JH254_RS11060 2379699 .. 2379724 + -16.1  -4.00756   TCCGTAAGCAGGGTA         TGGGGGCCGGG TGTG CCCGGCCCCTG          TTATTTGATGGAGTG 100 34
JH254_RS11065 2380362 .. 2380382 + -11.2  -5.71712   CGACATGCATAATGA            CCTCCATC TAAAT GATGGAGG            TTTTTTTATGTGGCG 100 52
JH254_RS11070 2381210 .. 2381228 + -14.6  -5.06414   GAATGGAATAAAAAA             TGCCGGTC AGT GACCGGCA             TTTTTGTTGGAGGAG 100 144
JH254_RS11080 2383285 .. 2383310 +  -9.7   -5.2112   GCCCCGCGAGTGATG         GGATGCCAGCG ATGA TGCTGGCATCA          TTTTTTCATCCTGTT 100 49
        ppsA 2386908 .. 2386926 + -13.8  -4.96848   CGCTTTTTGATGACA             CGGCGCCG CAA TGGCGCCG             TTTTTGTCTGCGCCC 100 50
JH254_RS11110 2389655 .. 2389681 +  -9.4   -4.2828   TCCGTGTACTTCTCA         GGCACTGGATTC ACC GAATGCAGGGCC         TTTTGCTGGGTGGCA  79 56
JH254_RS11120 2391273 .. 2391290 + -12.7  -5.45652   TACAAGCGATAAAAA             CGGGCAC CCAG GTGCCCG              TTTTTTATTGGAGGT 100 47
JH254_RS11130 2393448 .. 2393468 + -11.1  -2.78463   GCGGCGCTTCCCCCC            GGTCCGGCA TCA TGTCGGGCC            TGTCATCAAACCGAT  69 74
JH254_RS11135 2394582 .. 2394601 + -12.1  -3.25823   CGGATGTCGGCCCCG            GGCGGGG AGGGAA CCCCGCC             TTGATGTGGGCGCCC  77 44
JH254_RS11140 2397007 .. 2397038 + -18.8  -3.53012   TTGTCATCCATGCAC      CAGAGAGGGCAGCC CGCG GGCTGCCCTCTCTC       TTTGGGGGCCCCGCA 100 49
        truA 2397940 .. 2397952 +  -3.3   -4.7497   TGCCGGACTCGGCAC                CGGGT ACG ACCAG                TTTTTAGTAACTGGG  70 6
JH254_RS11150 NONE
        folC 2400216 .. 2400246 +  -6.1  -4.14739   CTGAGCCGTTCGCTC      CCCTGCTCCGTC AACGTGAC GACGG-GCCGGG       TTTTGCACTGGATAA  66 37
        dedD 2401209 .. 2401239 + -17.7  -5.71712   ATGATGAAATGAAAA      GACCGCGCCTCATG GCAA CATG-GGCGCGGTC       TTTTTTTGTGTCCAA 100 45
JH254_RS11185 2408219 .. 2408252 + -23.3   -2.8805   CAAGCTGTAACGACC     GACGACAGCAGGGCC TGCG GGCCCTGTTGTCGTC      TCTGTGCGCCGTCCT 100 31
JH254_RS11190 2409789 .. 2409816 + -15.6   -4.3586   GAAACATCCAAAAAA        GAGCCCTGAGGC AGTC GCCTTGGGGCTC         TTTTCGTCTGGCTGG 100 457
JH254_RS11225 NONE
JH254_RS11230 2421052 .. 2421075 +    -6  -2.87132   AATTTCATTTACATT          TTTTGGCGCGG ATC CC-CGCCAAAC          TATCTGAACGCCGCC  49 104
        hppD NONE
JH254_RS11240 NONE
JH254_RS11245 NONE
        maiA 2425229 .. 2425265 + -11.6  -3.34468   GCCCAGCCCTGAAGC   TGTGCAGACCGGACCAG CGCG TTGGCCCGGTCTGC-CG    TCTCTTTCCTTGCCC  74 29
JH254_RS11280 2431099 .. 2431120 + -17.3  -3.91032   ACATCTTGAATGGAG           GAGGCCCGC CATG GCGGGCCTC            TTTGTGCCATCGTTG 100 55
JH254_RS11305 2439525 .. 2439544 +  -3.4  -2.83012   GCTCAAGCACCCGCT            GCAGGCCC TGCT GGAACTGC             TCTGATGCTCCACTT  41 1
JH254_RS11310 2440056 .. 2440075 +  -9.3  -6.07627   TCAATCTCGATGCAA            GATGCCC CGGCGT GGGCATC             TTTTTTTTTGCGCCT 100 44
JH254_RS11315 2440736 .. 2440756 +  -3.1  -4.87626   AAGACAGCAGAACAA            AGTGGCGCT ATA ATCGCCGCC            TTTTTGCTATTCCGC  74 136
JH254_RS11320 2442727 .. 2442746 +   -15  -5.46276   CTGCACTGATGAGAA            GGCCGCTC CATG GAGCGGCC             TTTTTTGTGTCTGTT 100 48
JH254_RS11325 2443552 .. 2443564 +  -3.3  -4.59773   CTTGAGCCTGATCCT                GATGG TGA CCACC                TTTTTGGGGGTGACC  67 59
JH254_RS11335 NONE
JH254_RS11340 2447888 .. 2447905 + -12.7  -4.65446   GTGCAAGACAAGAAA             GGCGACC CCGG GGTCGCC              TTTTGTCTGTCTGCT  95 46
JH254_RS11355 NONE
JH254_RS11360 2453260 .. 2453283 + -16.8  -5.41143   GTCAGGAATAAAAAA          TGCCAGTCGG CGAA CCGACTGGCA           TTTTTTTCGCGGGTA 100 80
JH254_RS11370 2454795 .. 2454834 +  -8.6  -3.83998   ATGCGGGCTGTTCAA  GGGGCACAATATTTGTCA TAAC TGACCGACATTGTGCCGC   TTTGCTATGGCCTGC  69 55
JH254_RS11375 NONE
JH254_RS11380 2456198 .. 2456217 + -13.6   -5.4756   CGCTGACACCATCAT            GATGGCCC TGAC GGGCCATC             TTTTTTATTCCCCTT 100 35
JH254_RS11385 NONE
JH254_RS11390 NONE
JH254_RS11395 NONE
JH254_RS11400 2461274 .. 2461288 +  -3.4  -3.82084   CCTGCTCCCGGCTGG               TGCGGG TCC TCCGCC               TTGTTCCTCTTCAAC  53 194
        emrD 2462588 .. 2462606 + -13.1  -5.11063   CTGACACGGCCAAGA             GCCCGCC CCGTT GGCGGGC             TTTTTATTGCCTCCT 100 37
JH254_RS11420 2464009 .. 2464034 + -13.4  -3.63744   GCCCAGCGGGTCAAT         GAAAGAGCGC ATCACG GCGCTCTTTC          TGTTTTACAAGGGGC  84 48
        ubiH 2465413 .. 2465423 +  -2.4  -2.71712   GCGCTGTCGCCCCGG                 CGGC AAA GACG                 ATTTCGAGCAAGAGG  38 41
JH254_RS11430 2466758 .. 2466785 +  -6.2  -3.92324   AAACTAATCTGACAG        GGCGAGATGCCCC TTC GGGGTGTCA-GCC        TTTAATGTTGGCGAG  64 65
        gcvT 2468202 .. 2468234 +   -12  -5.06414   CGTTGGTGTAATCAT     TGATGGCGGCGAGGG TTGA CCTTCGCCGCCC-CA      TTTTTGTTGAAGCGA 100 30
        gcvH 2468670 .. 2468696 + -10.8  -2.75647   GAAGAGTAATGCCCC         CGGGCCCTGC CAACACA GCAGGGCCCA         CTTGTATGATTGCCA  66 32
        gcvP 2471808 .. 2471833 + -19.1  -3.48276   GACAGCCAATATGCA         CAAGGCCACCC CCAG GGGTGGCCTTG          TTGTGTGCGGCGCCC 100 61
JH254_RS11455 2473355 .. 2473380 + -16.1  -4.21465   CATCCGCAGTGAAAA         GGCCCCCGCCA GTGA TGGCGAGGGCC          TTGTTTCATTTTGGC 100 57
JH254_RS11465 2475228 .. 2475253 +  -9.8  -5.65177   CAGGCTGTGTAAGAA         TCCGAAACTC CTTGTT GGGTTTCGGA          TTTTTTTATGCGTAT 100 124
JH254_RS11470 2476574 .. 2476599 + -13.4  -3.05463   ACCTAGTAAAAACAA         TGCCAGTCAG GCTTAA CTGACTGGCA          TTAACTCCAGGGAGT  78 10
        queA 2481353 .. 2481367 + -12.8  -4.31433   CGGCTTCATATTACC               GGGCCC CTC GGGCCC               TTTGTTGTCAGACTG  93 89
         tgt NONE
        yajC NONE
        secD NONE
        secF 2485767 .. 2485784 + -14.1  -4.27117   TGCCGTAACAGACAA             GGGCGCC GCAA GGCGCCC              TTTCTCTTGTGGCCG 100 33
JH254_RS11515 2486340 .. 2486358 +  -9.6  -3.44552   GTCAGGATAGGGATT             GGATACCT CAC GGGTATCC             TGTTGTTGCTCCCCT  70 137
        nlpI 2487279 .. 2487295 +  -9.4  -4.85129   GATCCCCACGAAAAA              GGCCTC TTGAC GAGGCC              TTTTTGCTGTCTGGT  90 53
JH254_RS11535 2489987 .. 2490004 +  -2.7  -3.52113   GTGACCACGCAGGGT             GG-GGATG TAT CATCTGCC             TGTTTGTGCAGAAAT  48 104
        trmJ 2490835 .. 2490878 +  -9.7  -2.89191   GGGCACAGGATTAAT CCCGACTGATTTACTCAAG CATATA CTTGACTGATTTAGTCGGG TATGTGACCATATGC  65 27
        iscR NONE
JH254_RS11550 2492699 .. 2492719 + -14.1  -2.78384   TGGGCACATCACTGA            TCCTTGCCA GCA TGGCAAGGA            TCTGGTGAACAACGG  79 26
        iscU NONE
        iscA 2493578 .. 2493607 + -15.1  -2.79492   CCTTGCTCATCAACA       CAGTGGTGTGGAC GCCA GTCCATGCCACTG        CTTTCAAGTTCAAGA  81 128
        hscB 2494166 .. 2494178 +  -4.8  -3.05343   GGAACGATTCGAAGA                CTCG CTGTT CGAG                TCTTGACCCTCTAAC  47 7
        hscA NONE
         fdx 2496469 .. 2496493 +  -5.6    -5.252   TAATGATATGGTGAA         GGCCGTGACCC TTGA GGGA-GCGGCC          TTTTTTGTGCCCGTG  86 94
        pepB NONE
        pepB 2499235 .. 2499250 +  -4.6   -5.4492   CATTAGCATGCCGAT              CGTGCG CAAG CGCACA               TTTTTTCTCTCTGTC  88 121
         ndk 2499866 .. 2499881 + -10.4  -5.45813   TCTGCTGGTGAACAA              GGGAGC TTCG GCTCCC               TTTTGTTTTTTGGTC 100 46
   trmG/rlmN 2501109 .. 2501127 +  -3.9  -3.48276   GGATTTCCGTCAAAA             TGGTTTA ACTCC TAAGCCA             TTGTATAGACAGGAA  50 18
        tapF NONE
JH254_RS11605 NONE
        ispG 2503970 .. 2503996 + -19.4  -3.87062   CAAAGGTTGAACCAT         GACGGGGCCACC TGG GGTGGCCCCGGC         TTTAGGTTGTTGATT 100 31
        hisS NONE
JH254_RS11620 NONE
        bamB 2507234 .. 2507259 + -14.7  -4.06384   ATAATGTGAATATCC         GGCTCCTGGTC TTCG GACCCGGAGCC          TTTGTCGTCTTGAGA 100 48
         der 2508790 .. 2508811 +   -13   -5.1356   AGAAATAAAGCCCTG           CGGCTGCC CTTACC GGCAGCCG            TTTTTCTTGGTGGCC 100 33
JH254_RS11635 2509142 .. 2509157 + -11.8  -4.04719   CAAGGCATAAAAAAA              CCCGGC TGAT GCCGGG               TTTATACTGTGTGCT  87 31
        purL 2515018 .. 2515034 + -10.8  -5.61596   GCAAGAAACCAAAAA              CCGGCC CTTGT GGCCGG              TTTTTTTATGGGCAT 100 47
JH254_RS11775 2542073 .. 2542083 +  -4.6  -3.14931   GCTGGTCCGGCAGGG                 GGGT TGT GCCC                 TTACTCCCAGGTCGG  47 171
JH254_RS11780 2542439 .. 2542460 + -14.5  -5.45802   CTCGATAACGGAAAA           CGGCATGGA ATCC TCCATGCCG            TTTTTGTTTTCAGGG 100 46
JH254_RS11790 NONE
JH254_RS11795 2544780 .. 2544798 + -12.4  -3.30443   GCTTGCTGTTTCTTG             CCAGCCGG GTG TCGGCTGG             TTAATGTCATCGTCC  77 61
        ltaE 2545869 .. 2545892 + -18.2  -3.40522   TCCCCATCGCAACAA          CAAGGGCGCC ATCG GGCGCCCTTG           TTGTCATGGCAGGGT  95 47
JH254_RS11825 2551365 .. 2551379 +    -5   -2.5409   TTAATCGAATTTTTG               TCTCAT ATC ATGGGA               TCCATTAGACGTTAT  46 106
JH254_RS11830 2553007 .. 2553029 + -16.2  -5.47218   TGCCCCTTGAGGGTG           ACGGGGGGCC TTG GGCCCCCCGC           TTTTTTTGGGTAGAG 100 31
        nfsA 2553834 .. 2553852 +  -4.5  -3.79113   AAGACGCACCGGATG             CGGTCAC CACCT GTGAGCG             TTCTTGTGAGGCAAT  57 65
JH254_RS11840 NONE
JH254_RS11845 2555644 .. 2555658 +    -7  -3.40403   CATCAAGGTTATTCC               CGCCAG CAG CAGGCG               TTGTGCTCCCCAGCG  57 409
JH254_RS11855 2557518 .. 2557536 + -14.6  -2.78596   TATCACCAATAAAAA             CGCCTCCA ATC TGGAGGCG             TATGCTGACAAGGTG  79 49
         cmk 2559120 .. 2559141 +  -8.7  -2.90496   AACTGATGTCAGTCG           TCTGCACCA AGGA TGGCGCAGA            TAATTTAAAACAACC  61 35
        rpsA 2560892 .. 2560910 + -13.1  -5.47159   CTTGATGCAAGAAAA             GGGCGGC ATTGC GCCGCCC             TTTTTTATCTTGGCA 100 43
        ihfB 2561262 .. 2561279 +  -9.9   -5.2197   AATAATGCAGAAAAC             GGCATAC CTGA GTATGCC              TTTTTCATTTTTATG 100 36
JH254_RS11880 NONE
        lapB NONE
        pyrF 2563707 .. 2563740 + -17.5  -4.11394   CGTCATGGGCGAATG     AGC-GCAGGCCGGATC CCA GATCCGGCCTGCTGCA     TTTTGGCCGTGGGCT 100 44
JH254_RS11900 NONE
        queC 2565704 .. 2565720 +  -5.7  -3.64599   AAAGCGGATCCTGAG              CCTGTGC CTA GCCCGGG              TTTGGGGTATAATCC  58 27
        queE NONE
JH254_RS11915 NONE
JH254_RS11920 2567255 .. 2567269 + -11.4  -5.85737   GCAGCAATAAAAAAA               CCTCGC CTT GCGAGG               TTTTTTTATTGCTGT 100 53
JH254_RS11930 2576760 .. 2576779 +   -15  -5.47821   GTGAGATGATGCAAA            GAGCCGGC GAAT GCCGGCTC             TTTTTTTGGCTGAAT 100 45
JH254_RS11960 2583877 .. 2583909 + -17.9  -3.57144   GTTACTAATCACATT      TTTGCCGTCTGGACA GGA TTTCCAGACGGCAAA      TTTGGGGATCGGCGC 100 33
JH254_RS11965 NONE
JH254_RS11970 NONE
JH254_RS11975 2587468 .. 2587485 + -12.7  -4.86033   GTCCAGACAAGAAAA             GAGCGCC TTTC GGCGCTC              TTTTTATCAGGGTTT 100 62
        uvrB 2597152 .. 2597189 +  -4.7  -3.54129   GCGCGGCGAGCTGAT   CG-CGTCATGAGCGCCAG ACG CTGGCTCATCTGGCGGCG   TTTGCGCCGCCTCTA  52 16
JH254_RS12015 2597522 .. 2597540 +  -6.6  -3.21199   TGAGCCAGGTCTCAT             TGGCGTAG ACT CCACGCCG             TTCACTTCATGGGTA  54 132
JH254_RS12020 2598247 .. 2598269 + -17.8   -3.7282   CGTGCACGACATAAA           GAAGGGAGCC GAT GGCTCCCTTC           TTGTTGGTAGGCTGA 100 47
        fadR 2601721 .. 2601736 + -11.8  -5.60993   TTGGTCCAAGAAAAA              CGCGCC TGAT GGCGCG               TTTTTTTATGCCCGG 100 46
        sstT 2610615 .. 2610634 +   -15  -5.27335   TTCTGCTCTGCACAG            GCGCCCTC TTCG GAGGGCGC             TTTTTATTTGCGCGG 100 53
JH254_RS12080 2616615 .. 2616632 + -12.7  -5.40072   AGCAGCATGTTGAAA             GGCGACC CTCG GGTCGCC              TTTTTTTGCGGGCCC 100 85
JH254_RS12095 2617817 .. 2617838 + -10.1  -5.10461   TTAATTGAAATCAAA           GGGTGCTCC GATT GGGGCATCC            TTTTTATTACCTGAC 100 37
JH254_RS12100 2620693 .. 2620707 + -12.8  -5.92337   TGCTCCTGTGAAAAA               CCCCGC GAT GCGGGG               TTTTTTTTCATCTGT 100 45
JH254_RS12120 2626503 .. 2626522 +   -15   -3.6947   TGATGACCCACTCGT            TCGCCCCC GCCA GGGGGCGA             TTGTATTGAGCTTCT  90 87
JH254_RS12125 NONE
JH254_RS12130 2630195 .. 2630214 +   -15  -5.47218   GCCCACCTAAAAAAA            CAGCCGGC ATCT GCCGGCTG             TTTTTTTGACTGGCG 100 42
JH254_RS12140 2632324 .. 2632338 + -12.8  -3.61398   CAGCTGAAGGCCAGA               GGGCGC TTG GCGCCC               TTGTTCAAGCCGGGA  81 34
JH254_RS12165 2636375 .. 2636388 +  -5.2  -3.51232   AAGAAATCCTTCTAG               GGGC CAACTT GCCC                TTGCTTTAGGAGGGG  54 26
JH254_RS12170 2637261 .. 2637282 +  -8.7   -3.2614   GCGACTCTCTGTATA           GTCACGGCA CTGG TGACGTGAC            TTGCTGTCGCCACTG  65 79
        pdxY 2638605 .. 2638638 + -15.3  -2.65264   GCCTGGCCTGAGGAG     AATGATCAGCCCGCC CCAT GGCGGGCTGATCACG      TGCTATGCCTGCTAC  80 30
JH254_RS12200 2641758 .. 2641786 + -16.8  -4.56597   ACCCGCTAATCCTGT       C-GTCAGGCCCGC TTCG GCGGGCCTGACTG        TTTTTAAGCACAGCG 100 32
JH254_RS12205 2642424 .. 2642436 +  -6.9  -3.86346   GCGCAGGACTTGGCC                GGGCT GCT GGCCC                TTTATCAGGAACTCA  63 97
JH254_RS12210 NONE
JH254_RS12215 2643409 .. 2643443 + -19.4  -4.29472   AGCTGGCGGATGACA     TGGCCTGAGTTCGGTA CTG TACCGGGCTCAGGCCG     TTTAGTTTTACTTTG 100 100
JH254_RS12235 2647829 .. 2647842 +  -2.3  -3.98826   CCTTGTTACACTGCC               CGCAC TTAT GTTCG                TTTCTGGCTTCGTCC  54 132
JH254_RS12240 2648947 .. 2648962 + -11.8  -5.14563   AACGGATGGTGAGTA              GGGGCC TCAG GGCCCC               TTTTTTCATGGGGGA 100 60
JH254_RS12245 2649830 .. 2649846 + -12.3  -2.53715   GGAGGCCATCAAGGG              CCAGAGC CGC GCTCTGG              ATTAATCCTCATCAG  70 4
JH254_RS12265 2651248 .. 2651274 + -22.4  -3.27704   GGTACCCCCCATGAC         GAGGGCCCGATC GCA GATCGGGCCCTC         TTGCGTTTCAGCCCT 100 44
JH254_RS12280 2654270 .. 2654282 +  -4.8  -3.15861   AGACTCTGGACAAAA                GAGG TGTAC CCTC                TGTCTCTTGTCCATT  47 46
JH254_RS12285 2656215 .. 2656249 +    -2  -3.13073   TCCTTACCCTGTGAC    GGGTGCACCCGCACC CGGACT GCTGCCGGAG-ACCC     TATGTTCGTCCAACT  42 95
JH254_RS12290 2656988 .. 2657009 +   -13  -5.60993   CCGGCGCATCCTCCC           GCCCGCAC CTTGTT GTGCGGGC            TTTTTTTATGGCAAA 100 43
JH254_RS12295 2657683 .. 2657697 +  -4.2  -3.85698   TGACATTAGGTTCTG               GTGCTT TAT GGGCAC               TTTGTAAAAAGAAAG  58 426
JH254_RS12315 2659689 .. 2659714 +  -3.2  -3.53012   GTGCTGTCAAAGCGG         CGA-CGGCCCG CTACA CTGGCTGCTCG         TTTCACGGAGGACCC  48 118
JH254_RS12320 2660744 .. 2660756 +  -6.9  -2.64099   GCGGCCGGGTCATGA                TGGGG CGC CCCCG                GTTATACTGGCGAAC  50 68
JH254_RS12325 2661152 .. 2661183 + -18.1  -4.17089   TGGCGACCCTCATTT      C-CAGACGCCGGGC CCTGT GCCCGGCGTCTGCG      TTTTCAGCGTTTCGC 100 51
JH254_RS12335 2662726 .. 2662745 + -12.1  -4.63932   GAAAACGATTGTCAA            CGGGCCC GCACAA GGGCCCG             TTTTGTTACGAAGTG  95 63
        cyoA NONE
        cyoB NONE
JH254_RS12350 NONE
JH254_RS12355 2667187 .. 2667201 +  -2.8  -3.05715   TCATGTACAACCTCA               ACATCA ACA TGATGG               TTCACTGAGCGGGTT  43 3
        cyoE 2668146 .. 2668171 + -19.1  -2.52623   GAAATGCATGAAATC         CAGAGCCGGGA ATCT TCCCGGCTCTG          CTATTATGGGCGCCG  91 60
JH254_RS12365 2669705 .. 2669723 +  -3.1  -2.80816   TGCTGAGATCCTCAC             TCACAGG AGGAA CCTCTGA             TGTCATACGTGGACG  41 91
JH254_RS12370 2670172 .. 2670189 + -14.1  -4.73388   TCAGATGATGAAAAA             GCCCGCC AGCC GGCGGGC              TTTTTGCTGGGCGTT 100 106
JH254_RS12405 NONE
JH254_RS12410 2677208 .. 2677226 + -11.7  -3.29144   CCCTCAACAGCAGAA             CACCGGC GCAAG GCCGGTG             TTCTGAACAGCATGG  74 228
JH254_RS12430 2680585 .. 2680603 + -14.6  -4.24963   CAAGGAAATAGAAAA             GGGAGCCT GTC AGGCTCCC             TTTTACGTGGTTATG 100 59
JH254_RS12470 2688995 .. 2689013 +    -8  -2.66695   GCCTGCTGGCCAGCC             GCTGACCC CCC GGGCCGGC             ATCTTTGATGCAGGC  56 21
JH254_RS12475 NONE
JH254_RS12480 NONE
        scpB NONE
        rluB 2692308 .. 2692329 + -17.3  -5.47159   CCGGAGACGCCACAA           GCCCGCACC CCAA GGTGCGGGC            TTTTTTGTGTTCCGG 100 64
        tesB 2693410 .. 2693428 +   -16   -5.4833   TGCGCCAATAAAAAA             CGGGAGCC GAT GGCTCCCG             TTTTTTATTGCCTGC 100 51
JH254_RS12515 2697427 .. 2697441 +  -2.1   -3.9748   CAGTAGGATGGAGTA              GTCGCC TCAT GGC-AC               GTTTTTTTATAGATA  54 35
JH254_RS12520 NONE
JH254_RS12525 2702020 .. 2702045 + -14.7  -5.43414   GACGTAAAAAGCATC         AGGGGCGAACC ACTA GGTTCGCCCCG          TTTTTTATCTGTCAT 100 53
JH254_RS12530 2703517 .. 2703551 + -25.2  -3.02471   CCGGGACAAAAAGCA     CGAAGGGTTGGCCTCG CAC TGAGGCCAACCCTTCG     TCTGTCTGGTGCCGG 100 225
JH254_RS12535 2705139 .. 2705186 + -18.6  -3.63068   AGTTTTCAGCTCAAT CAGACCTA-AGAAGGAAGCGGCC ATC GGCCGCTTCCTTCTATGAGCCTG TTTAGCCTGATATGC 100 40
JH254_RS12570 2710253 .. 2710263 +  -2.4  -4.25104   TGTCATCACACTCTG                 CGCG ACC CGCC                 TTTTCATCACCAGCG  62 247
JH254_RS12585 2714304 .. 2714328 +    -5  -3.72576   GAAGGGCTATCAGCT          GAATATCCTG CGTAT CGGGGTGTTC          TTTGATGGCACCGCC  59 483
JH254_RS12615 NONE
JH254_RS12620 2719904 .. 2719923 +   -15  -4.99134   GAGCCATCTTCCAAA            GCCCAGCC TTAT GGCTGGGC             TTTTTCATTTCCCCT 100 35
JH254_RS12625 NONE
JH254_RS12630 2722533 .. 2722544 +  -4.4  -3.31792   AGCATCCACGCCGCC                TACC TGGA GGTA                 TTATGAGACTCATCA  49 8
JH254_RS12635 NONE
JH254_RS12640 2724084 .. 2724115 + -10.9  -4.43208   TTCCCCCTCTAGGCC     GG-GCGGGAG-GCGC CAAG GCGCTTTCCCGCTCC      TTTCTTTCCGGATAT  88 29
JH254_RS12645 NONE
JH254_RS12650 NONE
JH254_RS12655 NONE
JH254_RS12660 NONE
JH254_RS12665 NONE
JH254_RS12670 2731217 .. 2731227 +  -8.2  -3.95051   TGCCGATAGATGCAC                 CCGG ACG CCGG                 TTTGTCCCCTTCTTC  71 121
JH254_RS12675 NONE
JH254_RS12680 NONE
JH254_RS12685 2735600 .. 2735619 + -13.6  -4.65895   CCTTGCAATGAAAAA            GCCCTGTC CATG GACAGGGC             TTTTTGCATCGGGGC  95 43
JH254_RS12710 2740043 .. 2740056 +  -3.7  -2.74523   CCATGGCTGACGTCT               GCCGG GGGG CCTGC                TGATGTTGCCCCTCA  43 31
JH254_RS12715 2742512 .. 2742522 +  -6.8  -2.55074   GATTGGTTGGCGCAC                 TGGC TCA GCCA                 TGGCTTGACGTTCCC  50 43
JH254_RS12720 2744126 .. 2744140 +  -2.8  -2.75498   AGAGAATCTAATTAT               ATTTCG TCG CGAAAC               GTTCTATATAGGATA  41 443
JH254_RS12725 2745153 .. 2745175 + -10.6  -3.95036   ATCTAGTTATCACCT           GACACCGG CCTCAAA CCGGTGTC           TTGTTTACGCTACTT  79 108
JH254_RS12735 2746203 .. 2746230 + -16.4  -3.90092   CTGCAGCCACAAACA        G-GAAGCCCGGCA TGA TGCCGGGCTTCTC        TTCTTATATAACTAT 100 43
        elbB 2750091 .. 2750115 + -22.9  -3.91911   GGCAGACCAAAACAA          GCGGGCCGCTC AAG GAGCGGCCCGC          TTTCATTCCGGTCAG 100 47
JH254_RS12770 NONE
JH254_RS12775 2755730 .. 2755754 +  -9.2  -3.53012   CCCTTTTCATCGGCA          CGGGTGCTGG GTATG CTGGCGCCCG          TTTCGCACCAGCCCA  66 46
        trmL 2756577 .. 2756593 +  -7.2   -2.9294   AGCTGACGTTGCGCC              TCGGCG ATCAC CGCCGG              TATGTCGGTAATGTG  53 358
        plsB 2762392 .. 2762408 + -13.7  -5.14563   GACACCCAACAAAAA              GGCCGCA TCA TGCGGCC              TTTTTTCATCAAGGA 100 47
        fliL NONE
JH254_RS12825 2764887 .. 2764897 +  -4.6  -2.78384   AAGGTCCACTTTTTC                 CCCG CAC TGGG                 TCTGGTGAAAAGCAA  44 263
JH254_RS12865 NONE
JH254_RS12870 2774637 .. 2774657 +  -6.7  -4.66987   CTGGCTGATTAAAAC            GGGGGCCAA GGT TGGGCCCCA            TTTTATTACCCTCTG  76 49
         tdh 2775787 .. 2775802 + -11.8  -5.95539   TTCAGCCTCACTACA              CCCGGC GTAT GCCGGG               TTTTTTTATTTGGCA 100 84
JH254_RS12880 2776411 .. 2776428 +  -6.9  -3.65902   TCTAAGTAATTGAAA             GGGCTCC TCTT GCAGCCC              TTTCAATCCCATCAC  60 36
JH254_RS12885 2778993 .. 2779021 +  -5.1  -3.44527   CCCGGGTGATCCCCA        CGTAGGCGAGGCG TCG CTCCTCCTCCACG        TTGTCCTCGTCGATG  53 230
JH254_RS12895 NONE
JH254_RS12900 2782620 .. 2782652 + -12.2  -3.18366   CTAACCCGCCTTGTC     CAGTGGTCGATTAGGC TTC GCC-AATCGACC-CTG     TGTCTTCATTCCCGG  74 37
JH254_RS12965 2795277 .. 2795293 + -13.7  -5.37593   CCAGACAAACAAAAA              GAGCCGC AAT GCGGCTC              TTTTTTCATTTCCGG 100 52
        blrA NONE
        blrB NONE
      blaOXA 2801136 .. 2801152 + -15.1  -5.61596   CTGATGCCAGCAACA              CCGGCGC CTG GCGCCGG              TTTTTTTATCCCCCT 100 37
        creD 2802647 .. 2802666 + -16.4  -3.89336   CCATAAGCAAAAAAA            CCGGCGCC CTCG GGCGCCGG             TTTGCATTTCATTGA 100 35
JH254_RS13075 2818961 .. 2818984 + -17.4  -2.79952   GGTAAGCGACAGGCC          GGGCGGGGGC GAAG GCTCCCGCCC           TCCTTCCATTCATCT  87 36
JH254_RS13080 NONE
JH254_RS13085 2821469 .. 2821479 +  -2.4  -3.05562   ATCGCCATCGTCTGA                 CCGG GGG CCGC                 TCTTGAACCGTTTAT  42 26
JH254_RS13090 NONE
        fhuB 2824400 .. 2824418 + -13.1  -4.43879   AAAGCGCACAAAAAA             GCCCGGG ATGAA CCCGGGC             TTTTCATTGCCTGCT  95 53
        amoH 2832499 .. 2832521 + -17.8  -3.70773   AGCGATGGATAAAAA           GAAGCCCGCA TCA TGCGGGCTTC           TTGTTGGCTGTAAAC 100 184
JH254_RS13145 2834448 .. 2834469 + -10.1  -4.03234   CAAAGCCCAGAGAAA           GAAACCGCC ATCA GGCGGGTTC            TTTCTCTGGCACAGG  79 72
JH254_RS13175 2842002 .. 2842032 +  -7.5  -2.62616   CCGCAGGCGAGCAGC      GCCAGCATGGCGGG CACG TCCGTCA-GCAGGC       TGATATAGAGGGTGA  51 282
JH254_RS13195 NONE
JH254_RS13200 2847348 .. 2847366 +  -8.1  -4.57755   GCATATTCTCTGCAA             GCCCTGG CCCGT TCAGGGC             TTTTGTCTGATGGGT  82 97
        serC 2848609 .. 2848635 + -23.8  -4.57073   GTGTCTCCCCATTGC         CAGACGCCGGGG ATT CCCCGGCGTCTG         TTTTTCAGACCCATC 100 44
        aroA 2850050 .. 2850068 + -13.1  -4.39166   GGCCTGAGCCCTTTC             GGCCCGC TTCGT GCGGGCC             TTTTCATCTCTGCCC  95 34
        aroG 2851329 .. 2851347 +   -16  -5.27938   CGGGGCAATAAAAAA             GCGCGACC CTG GGTCGCGC             TTTTTGTTTGGCCAT 100 60
JH254_RS13225 2853359 .. 2853404 +  -2.4  -2.75708   AGGATGCGGCTGGCC TGGCGCCAGAGAGCCGCGATC AACCG GATCGCGGTTC-CACTCCCCG AATTTTTTGCCGGCA  39 48
JH254_RS13230 NONE
JH254_RS13235 2855521 .. 2855553 + -23.5  -3.53012   ATCGGCCACATCAAT      GACAGCGGGGGAGCC AGT GGCTCCCCCGCTGTA      TTTCAGGGGGAAGCA 100 60
JH254_RS13255 2860107 .. 2860122 + -10.4  -5.08824   GTTGCACTGCAAAAA              GGCTCC CTCG GGAGCC               TTTTTTACGTGGCGA 100 45
        mprF 2865902 .. 2865914 +  -3.4  -3.83758   AAATAGGAGTTGGCC                CATG AGAGC CATG                TTGTTGCTGTTGATT  53 35
JH254_RS13280 2866643 .. 2866661 + -17.4  -3.05844   CGGGAAAACGACACA             GGGCGGCC AAT GGCCGCCC             TGTTGCCATGGCCCC  89 52
JH254_RS13300 2870532 .. 2870551 +   -15  -3.57783   GGACGCGAAATGAAA            CAGCCCCG CGGG CGGGGCTG             TTGTCATTGTGATGG  90 43
JH254_RS13320 2875827 .. 2875877 +  -6.8  -2.80935   GTGATCCCCATCCCT TGATACC--CATGCCGGCATGGCG GAGTG CGCCGTGCCGGCTGGCTGGAGTCA TCTCATGAATCAAGT  51 37
        araG 2877358 .. 2877374 +    -5  -3.29471   GTCAAGGCGCTCAAT              CTGGCC ATGCC GGCCCG              TTGATCTGCTGACCG  52 5
        araH 2878446 .. 2878474 + -19.6  -4.07568   GATGTCTTTCCTCGT        CACCGGGTCGGC CTCGC GCCGGCCCGGTG        TTTTCCCCGGCAAGC 100 43
        araC 2879494 .. 2879510 +  -9.4  -4.79352   CCCAGAGATGACAAA              GCCCTC ATGAC GAGGGC              TTTTGTTATCCATGA  86 47
JH254_RS13350 2880521 .. 2880541 + -16.9  -3.20901   AACCGCTCTTCAAAA            CACGCAGCC TCG GGCTGCGTG            TTGCGTTGATGGGGT  88 133
JH254_RS13380 2888145 .. 2888161 +  -9.4  -5.84381   GGAAACATAAAAAAA              CGGGCT GATTG AGCCCG              TTTTTTTGTTGGTGC 100 72
        fabB 2891570 .. 2891585 + -11.8  -5.46657   CGCGGAATAGAAAAA              GGCGCC GAAA GGCGCC               TTTTTTATTGAACTC 100 61
        sdhC 2894723 .. 2894736 +  -2.4  -2.60714   TATTGGCGGGGGTAC               TGGT ATGGTA ACCA                ATTCTGCAACTTTCG  38 15
        sdhD NONE
        sdhA NONE
JH254_RS13425 NONE
        sucA 2900516 .. 2900533 +  -5.5  -2.89564   GAGTTGTGGATGAGA             GGG-CCCG TGT CGGGATCC             TCTCTGACCTGGAAC  48 43
        odhB NONE
        sucC NONE
        sucD 2903952 .. 2903969 + -12.7  -4.53705   TCTCAGATAGCAAAA             TGCCGCC CTAG GGCGGCA              TTTTATATGGAGGTT  95 53
        hemL 2910975 .. 2910991 + -15.1  -5.68438   AGCAAGATGTGCAGA              GGGCCCC GAT GGGGCCC              TTTTTTGTTTGCTCA 100 46
JH254_RS13480 2912129 .. 2912142 +  -5.3  -3.53811   AGCCATTTGAGCATC               TCCAT CTCC ATGGA                TTTGACCAGCATGGC  55 187
JH254_RS13495 2914618 .. 2914643 +  -5.5  -3.53307   CCCGCCCCGGTTGGC         GGCTA-CTCGAA GGG TTCGAGATAGGC         TTCTATGGCCTTCTT  54 66
JH254_RS13505 NONE
JH254_RS13510 2916384 .. 2916407 + -13.8  -4.30576   CAACCCCATGAAAAA          AGCCGCCCTG TTCC CAGGGCGGCC           TTTTCATGGTCAAAC  95 50
        thpR NONE
        sfsA 2923348 .. 2923362 +  -7.1  -2.52464   CTCAATTTATGGATG               GCACG GGTAG CGTGC               TGAATTAGGAGACAG  50 112
        dksA 2923856 .. 2923871 + -10.4   -5.4756   CCACAGGAACGAAAA              GGGAGC CCAG GCTCCC               TTTTTTATTGAGCTT 100 51
      gluQRS 2924943 .. 2924957 +  -2.1  -3.62096   TAGGCCGCTATTTTT               TTGGC CTCCC GTCAA               TTTGAAGTCATAACG  48 126
        pcnB NONE
        folK NONE
        panB 2927776 .. 2927793 + -14.1  -3.05844   CTGTCGTCATGAGCG             CGGGGGC CTGT GCCCCCG              TCTTGCCCTCCCCCC  81 45
        panC NONE
JH254_RS13570 2929098 .. 2929113 + -11.8   -4.7254   ACGTGCAAATAAAAA              GGCGCC CGAG GGCGCC               TTTTTGCTGGCGGGT 100 48
JH254_RS13590 2932303 .. 2932332 + -26.5  -5.26316   GCAGATGTTGACAAC       GCGGCGCCGGGCT TTAC AGCCCGGCGCCGC        TTTTTTGTCCGCTCC 100 46
         ppa 2935118 .. 2935133 + -11.8  -5.28778   ATTCCTCGCAAAAAA              GGCGCC TTAT GGCGCC               TTTTTTATGGGTCGT 100 45
JH254_RS13615 2936592 .. 2936618 +  -3.8  -3.04263   GCATTATTTAACACT         TTTTAAACAGAT CCG ATCAGTTTAGGA         TGTTCAGGGTCCCAT  44 141
JH254_RS13620 2937236 .. 2937252 + -11.5  -3.53563   CTGAATCAGAGAGAA              GGGCGCT GAT GGCGCCC              TTTCCACAAGGGTCT  75 37
JH254_RS13625 NONE
JH254_RS13630 NONE
JH254_RS13635 NONE
JH254_RS13640 NONE
JH254_RS13645 2940693 .. 2940712 + -13.6    -5.626   AGAGTGAGCCCCTGA            TGGCCTCC CCCA GGAGGCCA             TTTTTTTATCCCGTG 100 34
JH254_RS13650 2941814 .. 2941826 +  -4.8  -3.63073   AAGAGACATATAGAA                CGCT ATTTA AGCG                TTCTTGGGCACTCTG  54 185
JH254_RS13655 2943554 .. 2943579 + -19.1  -5.24989   ATCACCGCAGAAAAA         CCACATGGGCC CTTG GGCCCATGTGG          TTTTTTAATGTCTGC 100 59
JH254_RS13660 2945314 .. 2945329 +  -4.7  -2.57564   TGGGTCTATTCGAAA              CACCT AAATTA AGGTG               GTTGTAAGACGATGA  43 3
JH254_RS13665 NONE
JH254_RS13670 2947264 .. 2947302 +  -9.4  -3.43071   TGCATTCGGGTTGCT   GCCCGAGTGATGACCCGG TTA CCGGGATAACAATCCGGC   TTCCTTGATCTGACG  66 509
JH254_RS13700 NONE
JH254_RS13705 2955504 .. 2955531 + -25.6  -4.66609   ATGACCATAAAAAAA        CGGGCCCGGCGC GAGT GCGCCGGGCCCG         TTTTTCAATGAGGTG 100 58
        rdgB 2959283 .. 2959301 + -13.8  -3.90112   CGTTGTCATCTACAA             TGGGGGCC GTC GGCCCCCG             TTTCGTTCGCGGCGC  93 58
        hemW 2960585 .. 2960613 + -23.3  -3.10975   CAGCGAATAGAAAAA        CAATCAGGGCGCC ATT GGCGCCCTGATTG        TGTTAGCTGATGCCT 100 82
        purH 2963964 .. 2963988 + -17.1  -2.60496   TCCGTCACTGACAGC          CCAGGGCCGCC GAT GGCGGCCCTGC          CTCTTTAGCACCGGA  86 30
        purD 2965379 .. 2965392 +  -9.5   -5.7946   TCCCGATCACTCAAA               GGGCC TGCG GGCCC                TTTTTTTGTTGCACG 100 49
JH254_RS13760 NONE
JH254_RS13765 NONE
JH254_RS13770 2966680 .. 2966697 + -14.1  -3.15574   CGTCTGAACGTTCAC             GGGGCCC TGCG GGGCCCC              TGTTCATCCCCTTCG  81 34
JH254_RS13775 2969558 .. 2969582 + -22.9  -4.25283   CCCGGCGCCGAACCA          GGCCTCCCGCC ATC GGCGGGAGGCC          TTTTCATGGCCCCAT 100 69
JH254_RS13780 2970149 .. 2970166 + -12.7  -4.04206   GCCAGAAACGACAAA             GCCGCTC AAAA GAGCGGC              TTTGTCTGAAAATGG  91 43
JH254_RS13800 2980938 .. 2980957 + -13.6  -5.60993   GCGGGCTGGGCAAAA            GCGGCAGA GCAA TCTGCCGC             TTTTTTTATGGGGGA 100 48
JH254_RS13810 2983383 .. 2983402 + -12.1  -3.20751   AGCGGACATAAAAAA            GCGCCGG ACCAGG CCGGCGC             TCTTCGCTTATTCCC  74 30
JH254_RS13820 NONE
JH254_RS13825 2986727 .. 2986750 +    -8  -4.65895   CCGTTGTCGAAAGGG          GGGCTGGCGG GTGA CCGCCATCGC           TTTTTCACTGCAAGA  82 46
JH254_RS13830 2988022 .. 2988039 + -12.7   -4.7173   GTGATGGAAAAAAAA             CGGGAGC AGAT GCTCCCG              TTTTTGCGTCTGGTC 100 60
JH254_RS13835 2988775 .. 2988794 +  -3.5  -2.70932   GCGCCTGAGTGGCAA            C-CGGGGC CTGGA GTCCCGAG            TGATTGGGCCAACAG  42 33
JH254_RS13840 2990201 .. 2990232 +   -26  -3.56092   GGCACCCTCTGGTGA      CGACAACGCCCGGC CCCT GCCGGGCGTTGTCG       TTTCGGCAATAGTGA 100 41
JH254_RS13845 2991574 .. 2991597 + -11.7  -2.66695   TCCCGCTTATGACAA          GGTGCCGTG GCGCAG CGCGGCACC           GTATTTAATCACCGA  67 41
JH254_RS13850 2992692 .. 2992711 + -12.8  -5.24129   CCGTCGGTATTCCGA            GCCCCGGC CACT GTCGGGGC             TTTTTTATGGCGCGG 100 47
        putP 2994474 .. 2994491 + -14.1   -4.7497   GCCTCGACGACAAAA             GCCCCGC AACT GCGGGGC              TTTTTAATGGGTAAA 100 46
JH254_RS13895 2999906 .. 2999919 +  -9.5  -5.27477   CGCAGTCATAGAAAA               GCCCC TTGC GGGGC                TTTTTTACTTGGAAT 100 61
JH254_RS13905 3001618 .. 3001651 + -18.4  -4.79752   GGTCATCAGCCCCAA     TGAAAAAGGGCCTG CTGTGA CAGGCCCTTTTTCA      TTTTCTGTTGTTCCG 100 23
JH254_RS13925 3005459 .. 3005494 + -12.7  -3.39749   GGGCGGGGAAGGTGT   GC-GGGGAGCCCGTGTC GCCC GACA-GGGCTTCCCTGC    TTCTCGCCTTGTTGA  79 43
JH254_RS13930 3006899 .. 3006919 +   -14  -4.28548   CACTGCACATCCCAG            GACCGGCC CATGT GGCCGGTC            TTTTCGTGGCTGGCT 100 54
JH254_RS13935 3008176 .. 3008194 + -13.8  -4.72272   CCGAACCATGAAAAA             GCCTCCGC TAT GCGGGGGC             TTTTTGCTGGGCAAG 100 51
JH254_RS13945 NONE
JH254_RS13950 3012126 .. 3012157 + -17.4  -3.05463   GCTGCTCTGATGGCT      CGACACATCCCGAC CTCG GTCGGGATGTGTCA       TTGGGTCAACGGGGT  89 31
JH254_RS13960 3014881 .. 3014899 + -14.6  -5.60993   GCGAGGCAAAAAAAA             CCAGCGAC GGG GTCGCTGG             TTTTTTTATGGCCGG 100 50
        trmB NONE
JH254_RS13980 3018732 .. 3018748 + -13.7  -4.87665   CGGGCAGATAGAAAA              TCCCGCC GCC GGCGGGA              TTTTTGTCGGTGGGC 100 56
        glsB 3020026 .. 3020045 +  -4.9  -2.87344   GAGCAAGGGGCTGAA            GGCCGAC AAACCC GTCGCCC             TCTATGGCACCCCTC  44 333
JH254_RS13995 3021447 .. 3021472 + -19.1  -3.08508   GCTCTCCTCAAGCAA         CAAGGGCTGCC CGCG GGCAGCCCTTG          TCATTTTCAGCCCTC  95 42
JH254_RS14010 3027203 .. 3027224 + -17.3  -3.72363   TGACAGATGCAAAAA           GGCCCGCTC ATCT GAGCGGGCC            TTTCGAATTTGGCTC 100 59
        rraB 3028138 .. 3028167 + -20.9  -3.22884   TACGCTTTGCAAAAA       CAACAAGGCCACC CTCG GGTGGCCTTGTTG        TTGCTGGCTTACTGC 100 56
JH254_RS14035 3030833 .. 3030852 +  -9.2  -5.64274   GGGTATCATGAAAAA            CCCCGCTG CGTG CAACGGGG             TTTTTTTATGCCTGC 100 48
         orn 3034550 .. 3034561 +  -2.2  -4.08767   CCAAATGCTGTACGG                TCTG TTTT CAGG                 TTTTGCGGGAATAGC  56 187
JH254_RS14070 NONE
JH254_RS14075 NONE
JH254_RS14080 3034854 .. 3034874 +  -3.1  -3.15427   TTTCCCGCTCCAATA            TGCAGTGCC GGA GTCACCGCG            TTGGTAGAGCATGTT  43 29
JH254_RS14085 NONE
JH254_RS14090 3035178 .. 3035199 +    -3  -2.56596   TAGATATGTGTAAGT           GATATTCC GATGCG GGAATAGC            TCAGTTGGTAGAGCA  40 53
JH254_RS14095 NONE
JH254_RS14100 3035555 .. 3035571 +  -6.5   -4.0162   TTTGAATTGCCCATC              ACATCGC GCC GCGATGA              TTTGTCGTATCCGGC  66 216
        gltX 3041055 .. 3041073 +  -4.4  -2.78934   GGCAAGGAGCGGGTC             CTCGCTCG TAT CGACCGCG             CTTTGGCGTATATCG  44 116
JH254_RS14125 3041427 .. 3041446 + -12.8  -3.54181   GCCATGGCATGAAAA            GGGCCTCC TGAC GGGGGCCC             TTCGTATTTTGGCCT  81 194
JH254_RS14130 NONE
JH254_RS14135 3041874 .. 3041887 +  -2.3  -2.61582   TGTGTATCACCCAGG               CCGAC CTTT GTGGG                GTTATAGCTCAGCTG  38 78
JH254_RS14140 3041994 .. 3042005 +  -4.4  -3.69621   CGCCAGAACCATTCA                TTCG GTAC CGAA                 TTTGGGGTTATAGCT  54 59
JH254_RS14145 NONE
JH254_RS14150 3042216 .. 3042236 + -18.3  -5.31519   GCAAGAAAGCACCAA            GGCCACCGC ATC GCGGTGGCC            TTTTTGTTTGCCTGT 100 47
JH254_RS14160 3046513 .. 3046532 +  -6.4  -3.52539   AGTTAGAGCAAAGAC            CTGGTGCA GAAA TGCATCGG             TTCTGATTCAACTTC  56 95
JH254_RS14165 3046820 .. 3046848 + -14.1  -4.64676   CGCAGCTCAAGAATG        CAGACATAAGCAT CAC ATGTTTATGTCTG        TTTTCTTCGGCCTCG 100 49
JH254_RS14170 NONE
         rrf 3050130 .. 3050150 +  -5.4  -3.62032   AGGCACCCAATTTTA            GATTACGC ATTGA GCGTGGTC            TTTACCGGTTAGTGT  56 37
JH254_RS14180 NONE
         rrf 3050393 .. 3050412 +   -15  -4.85433   CACCTATTCAGAAGA            GGCCTCCC ATGC GGGAGGCC             TTTTTGCATTTCTGT 100 40
        ebgR 3051741 .. 3051755 +  -2.8  -3.03441   CGCTCACTGTGATCA               GGTTAA AAC TTTACC               TATTCAGAACTGATA  42 258
        ebgA NONE
JH254_RS14200 3055389 .. 3055422 +  -3.2  -3.74872   CTGACAAAGCCGGAA     GGGCGGGGT-T CACCCTACAACCC ATACCCCGCCC     TTTCGTGAGATAACT  53 58
JH254_RS14205 3056889 .. 3056910 +  -5.1  -3.18274   CAGCGCAGGTTGCCA           TGCAGACGCC ATA GGCA-CTGCA           TTGAATTCCAATCAA  50 12
JH254_RS14210 NONE
JH254_RS14215 3058952 .. 3058971 +   -15   -5.4505   GTGGCAAACAGGAGA            CGGGCGAC CAGG GTCGCCCG             TTTTTTATTGGCCGG 100 48
JH254_RS14220 3060191 .. 3060213 + -19.2  -4.06055   GGTCCGGATAAAGAA           GAGGGAGGCC ATG GGCCTCCCTC           TTTCGTTTGCCGCGT 100 43
JH254_RS14230 3063424 .. 3063437 +  -9.5  -5.02074   CGCAACAATGAAAAA               GGCCC CTCG GGGCC                TTTTTTGCAGGATGC 100 50
JH254_RS14250 3067115 .. 3067132 + -14.1   -4.1899   GCCCGAAAAAGAAAA             GGCCCGC ATGT GCGGGCC              TTTTGCATGGCATGA 100 47
        uvrD 3074609 .. 3074631 + -10.6  -3.95036   ATCTAGTTATCACCT           GACACCGG CCTCAAA CCGGTGTC           TTGTTTACGCTACTT  79 50
JH254_RS14300 3078880 .. 3078895 + -11.8  -2.74012   GAGATCCGCCGGGTG              GGCGGG TTGG CCCGCC               TCCTTCAGGTAATCG  66 485
JH254_RS14315 3081094 .. 3081122 + -13.2   -2.5955   GAGCGGAGAGAGAAA       CCCGGCCAGCGACG GGG CGT-GC-GGCCGGG       TGAATTGTAAAGAGT  73 67
JH254_RS14325 3082161 .. 3082192 + -23.2  -4.07885   GCCGTGCTTCAGCGA      CGACAAAGCCTGCC CCCT GGCAGGCTTTGTCG       TTTTCGGCCCGGCTC 100 41
        eamB 3085186 .. 3085200 +    -7  -3.59979   ACGGAACGCAGGCCG               GGGGGC GTC GCCACC               TTTCGCCTGCAGAGA  60 40
JH254_RS14350 3086306 .. 3086326 +  -3.1  -3.03159   TCGCCTTGGGGTTGA            GCAGATTGG TGG CCAGCCCGC            TCTTCACCCCCTTGC  43 351
JH254_RS14385 3092738 .. 3092770 +  -6.1  -2.78384   TGACCCCCACATCAC      ACAGGATGGCGCTCG TCC CGGGCGTCATCCCCC      TGTGCTGCCCCGGCG  49 38
JH254_RS14390 3094352 .. 3094384 + -19.1  -3.48593   CATGGCTTTAATCTC      TTGCCCCCGCAGGCC GCC GGTCTGCGGGGGCGC      TTCTGTCAAGGAGTA 100 57
JH254_RS14395 NONE
JH254_RS14400 3096283 .. 3096312 +  -5.5  -3.70902   GTTTCTGTGCCGGCA       CCCCGGGGGGCCGG CCT CCT-CCCGCCGAGG       TTTCCATGTCCCGCA  59 51
JH254_RS14405 3097227 .. 3097243 +  -4.3  -3.61178   AAACCGCCAAAACCC              CTCGCTG AGG CGGCAAG              TTTGCGATCAATCAA  54 95
JH254_RS14410 3097898 .. 3097927 + -22.3  -3.15544   TGATGCCACGGTGAA       TGACAGAGGGGCC TGCG GGCCCCTCTGTCA        TTGCTGGCGGTCAGA 100 38
JH254_RS14420 3098790 .. 3098807 +  -4.7  -2.80113   TCTTCCTGCGCCAGC             GGGGGCG CCGA TGACCCC              TCTGCTGACCTGGTG  44 12
        rmuC 3100157 .. 3100187 + -24.2  -3.72576   CATTCGCCGGGACAA       CGAAAAGGGCAGCC ATT GGCTGCCCTTTTCG       TTTCATGCAACAGCC 100 51
JH254_RS14455 NONE
        dprA NONE
JH254_RS14465 NONE
JH254_RS14470 3109662 .. 3109682 +  -8.9  -2.96274   AATCCAGTGATGAGA            GGCGGCAGC GTG GCTGTCGCA            TGTGCTTATGCCAAA  61 271
JH254_RS14475 3110254 .. 3110264 +  -8.2  -3.45592   CGCCCATCCTGAGTT                 GGGC ACG GCCC                 TGTTTCATGCAGGTT  64 29
        hemF 3111265 .. 3111281 + -10.1  -3.94877   GTGGTTGTGACCAGA              GGGGCCA TGA TGGCCTC              TTCTTATTGGCCGAT  77 31
        aroE 3112271 .. 3112284 +  -6.7  -3.21924   AACCGGATAACAAAA               CGGTA CCCC TACCG                TGTTATCCGGAGTCA  56 112
JH254_RS14490 NONE
        trmA 3121378 .. 3121413 + -10.5  -3.55444   GGGCGGCTGATCCGG   GCGGTTCCCCGGCTGCT CCAT GGCAGCCGG--AGCCGC    TTTGGCCACTAAAGG  74 31
        rstA NONE
        rstB 3124022 .. 3124036 +  -5.7  -2.78384   CCTAGGATGAAGTCA               TGGAG AAACG CTCCA               TGTCATCAAACCGAA  49 36
JH254_RS14545 3124268 .. 3124298 + -11.1  -5.12617   CCCGCTCCCGCCATG       AAAAAGGGGCCCC CGACA GGGGCCCCTTCTG       TTTTTTGCGTACTTG 100 45
        priA 3130078 .. 3130104 +  -2.1  -2.50994   CTTGCGCACCGGGTG         GCGAGGATCGG AGAAC TCGGCGCTCGC         GTTGATGAAGTTGCA  37 226
JH254_RS14575 3130961 .. 3130988 + -21.4  -3.72576   TCACACCCACATAAA        CAACGAGGGGGC CAAG GCCCCCTCGTTG         TTTAATAGCAAGGCA 100 27
JH254_RS14610 3140792 .. 3140804 +  -2.6  -2.80074   CGCCACCATGGTCTA                GTCG TGGGC CGGC                TGATATTATGGCAAC  39 81
JH254_RS14615 NONE
JH254_RS14620 3143125 .. 3143140 +  -4.6  -3.42354   CTGCCCCAGCAGACA              GGCGCT CACC AGCACC               TTGTGCATTCCCGTC  53 418
JH254_RS14635 NONE
        pncB 3145909 .. 3145932 + -19.6  -4.54047   GACGCCAAACAAAAA          GCCCGCCGGT TTGC ACCGGCGGGC           TTTTGTATCGACTCA 100 54
JH254_RS14690 3156587 .. 3156605 + -13.1  -5.40625   ATCACCGATGCACCA             GCCCCCG CCACC CGGGGGC             TTTTTTATGTCATAT 100 45
JH254_RS14710 3161508 .. 3161544 +  -9.6  -3.59966   TGCAGGGCGCATCCC   CATACAAGAGAGGG-CCC CGC GGGACCCTGTC-TGTATG   TTCTGTGTGCGCTCT  72 315
        coaD 3163333 .. 3163358 + -17.7  -3.05463   ATGGGCCGAAACGAA         CAAGGGCTACC CGCG GGTAGCCCTTG          TTGCATCAAGGCACT  89 52
       coaBC NONE
         dut NONE
        slmA NONE
JH254_RS14780 3171161 .. 3171192 + -14.4  -4.01137   TCCTCGGTGTGCGTT      CTCCAGTGCCAGCC TTCG GGCTGGCACTGTCG       TTTCTGCCTTCTGTG  95 41
         pgi 3173547 .. 3173567 + -18.3  -5.27923   CTCCAGAATGCAAAA            GCCCCGCTC GAT GAGCGGGGC            TTTTTTATAGGCTTC 100 52
        ilvY 3176232 .. 3176244 +  -6.2  -3.09516   TGGGACACTGCACGC                GGCC AGGGA GGCC                TTCGCTGATCCGGCA  52 5
JH254_RS14805 NONE
JH254_RS14810 3179282 .. 3179301 +   -15  -4.06786   TCAGGCAATAAAAAA            CCCCGCTC GAGT GAGCGGGG             TTTCTCGTGTTGGGT 100 92
        istB 3181454 .. 3181464 +  -4.6  -3.09492   AGGGTGTTCACGTTG                 GCCG GAA TGGC                 TGTTCAACTTCGCCG  47 71
JH254_RS14835 3185253 .. 3185268 +  -3.3  -3.58533   AATCGCGGTATAACA              CATTG TTCGAT CAATG               TTTGGGGCCTTATCC  51 256
JH254_RS14875 NONE
        uvrA 3197822 .. 3197835 +  -9.5   -5.4505   GTCACTCGAGAAAAA               GGGGC CAAG GCCCC                TTTTTTGTTGGCCGG 100 43
JH254_RS14885 3199030 .. 3199051 +    -5  -4.42653   ACAAGCATGTCTCTT           TGGCCCGG CTCTGT TCGGGCCC            TTTTCTGCCTGCCAT  70 72
JH254_RS14890 NONE
JH254_RS14895 3202649 .. 3202668 +   -15  -4.24204   GTTCACCATGAAGAA            CGGGAGGC CTTG GCCTCCCG             TTTTGCATCTGCGTG 100 43
        metF 3204730 .. 3204751 + -13.1  -5.45802   CTCTGATACAGAAAA           GCCAATGAG TCTT CTCATTGGC            TTTTTGTTTTGGGCG 100 48
JH254_RS14920 3208034 .. 3208060 +  -7.2  -2.78463   TATCTGCAGGGCTCT         GCCACTGTGTCC GAG GGATACACGGGC         TATCATCCCGAGGAT  52 239
JH254_RS14930 3211124 .. 3211143 +  -6.4  -3.52539   AGTTAGAGCAAAGAC            CTGGTGCA GAAA TGCATCGG             TTCTGATTCAACTTC  56 95
JH254_RS14935 3211431 .. 3211459 + -14.1  -4.64676   CGCAGCTCAAGAATG        CAGACATAAGCAT CAC ATGTTTATGTCTG        TTTTCTTCGGCCTCG 100 49
JH254_RS14940 NONE
         rrf 3214745 .. 3214764 +   -15   -5.4833   ACCCAATACAAGAAA            CCCCGCTC ACTC GAGCGGGG             TTTTTTATTGCCTGA 100 41
JH254_RS14950 3215444 .. 3215462 +   -16  -4.23781   CCCCGCTCTCGTTAA             CACCGGCC TCT GGCCGGTG             TTTCATTTTCATGCC 100 46
JH254_RS14955 3218741 .. 3218759 + -13.1  -4.05245   CATCGCATGAAAAAA             CGGGGCC ATTTC GGCCCCG             TTTGATTGTGTACTG  91 46
        pmbA 3220866 .. 3220898 + -16.4  -3.41569   CTAGCTTTTAGCACT      CAGAACCCCCGATG CGTCA CATCAGGGGTTCTG      TATTTCAATGCCTGA  93 102
JH254_RS14990 3228266 .. 3228286 + -16.9  -3.47573   CGGCAAGATGGCAAA            CGGCCTGCA TGA TGCAGGCCG            TTGTCGTATCCGTGG  93 58
JH254_RS15005 NONE
        lysA NONE
        dapF 3231864 .. 3231878 + -12.8  -4.62783   TCAACGGATCATATC               GGGGCC CTT GGCCCC               TTTTTCGGATGGATC  95 66
JH254_RS15020 NONE
        xerC 3233644 .. 3233654 +  -2.4  -4.14739   AGGAGTAAAGAGGAA                 CAGC CAT GCAG                 TTTTACCGTCGCTGG  56 116
JH254_RS15030 NONE
JH254_RS15035 3235149 .. 3235185 +   -10  -3.16564   GATCAGCCCGTCTTC    GGCATGGGCCAGGGGG GCCAG CCCCTTGGCCAGCGTC    TTGATCCCCTGCCCG  64 339
JH254_RS15055 3239814 .. 3239835 +  -6.5  -2.79183   ACAGCAGCAGGGGCA           CGCCGT-CCG GCC CGGCACGGCC           TATGGTGAGGCTCAG  49 222
        metA NONE
JH254_RS15080 3244399 .. 3244433 + -19.4  -4.29472   AGCTGGCGGATGACA     TGGCCTGAGTTCGGTA CTG TACCGGGCTCAGGCCG     TTTAGTTTTACTTTG 100 101
         rrf NONE
JH254_RS15095 3244776 .. 3244795 + -13.6  -5.58454   GCCACTACTTAAGAA            GCCCAGTC GAAA GACTGGGC             TTTTTTTCGTCTCCA 100 37
JH254_RS15105 3246616 .. 3246631 +  -4.6  -4.37658   TCTCATGGAAAATGA              GGCCTC CAAC GAGCCC               TTTTATGAAAAACTT  68 85
JH254_RS15110 3248121 .. 3248136 + -11.8  -4.76041   TCACACTATCGAGAA              GGGCCC TGCG GGGCCC               TTTTTCATGGCTGTG 100 44
        dhaK NONE
        dhaL NONE
JH254_RS15125 3250772 .. 3250797 + -16.1  -5.00884   GAAACATTCCCCCAT         CCGGGCCCCGT CAAG ACGGGGCCCGC          TTTTTTGAGGGGCGT 100 39
JH254_RS15140 3255084 .. 3255101 +  -4.1  -2.73875   TACGGGACGCCGCCG             CCAGG GGGGCCAA CCTGG              TGCTGTTGCAGGAGC  43 255
JH254_RS15150 NONE
JH254_RS15155 NONE
JH254_RS15160 3258167 .. 3258196 + -17.9   -3.1886   TGGCGGTGTGACGCA       GAACAAGGGGCGC CTCG GCGCCCCTTGTCC        TTGCTGGCGTTCCAT  90 61
JH254_RS15180 3262343 .. 3262364 + -14.5  -4.91511   GGGTCAGATAAACAA           CAGGCCATC ATGT GATGGCCTG            TTTTTATGGTGGCAT 100 55
JH254_RS15190 3264493 .. 3264509 + -13.7  -5.14163   TACCGCATTGAACAA              CGGAGCC TCG GGCTCCG              TTTTTATTGGTGACT 100 233
JH254_RS15200 NONE
JH254_RS15205 3268065 .. 3268086 + -17.3  -3.28497   CAGGCGGCAATAAAA           CGAGGCGCC CAAG GGCGCCTCG            TTCAATTTGGGGTCA  91 42
JH254_RS15220 3271305 .. 3271328 + -16.8  -2.62616   CGGCATGCTGAGCAA          GGAAGAGGCC TGAG GGCCTCTTCC           TCGTCTGGAGGGTCA  85 13
JH254_RS15255 3277835 .. 3277863 +  -5.9  -3.64487   TGGCCTCGCTCTCCC        CCAGATGGAGCTG GCA CAGCGCCATGTAG        TTGTTGGGCCTGTGC  57 253
JH254_RS15270 NONE
JH254_RS15275 3281112 .. 3281124 +  -2.7   -4.1721   TGGCGAAATGAATGA                GTTAA CAA TTAGC                TTTTACACTGTAAAT  58 52
JH254_RS15280 3281596 .. 3281614 +   -16  -5.24531   TTCCAACGCCTTTTG             GCCGGTGC CCT GCACCGGC             TTTTTTGTGCCCGCT 100 60
        recC NONE
        recB NONE
        recD 3290901 .. 3290926 +  -4.2  -3.73953   TTGTCTGCATAGATG         TTGCACA-ATA AAAAC TATGTGTGCAA         TTTACTCAAAATGAT  57 95
JH254_RS15300 NONE
JH254_RS15305 3292658 .. 3292674 +  -2.1  -3.67285   TAGATTGTGGCTGAG              CGTAGCG AAG CCCAACG              TTTACCGTGTGTTCT  48 138
JH254_RS15315 3294254 .. 3294270 +  -3.6  -3.10908   TGTCCCCCGGGCCCC              GCAAGC AGATG GCGTGC              TTAGATGCTGGATTT  46 68
JH254_RS15330 NONE
JH254_RS15335 3297832 .. 3297847 + -11.8   -4.7497   GACCTGAATGAGAAA              GGGGCC CGAG GGCCCC               TTTTTGCTGGCTGGC 100 49
JH254_RS15350 NONE
JH254_RS15355 3302910 .. 3302923 +  -9.5   -5.2166   GCGGGCAACAAAAAA               CCCGC CGAA GCGGG                TTTTTTCAATTCTTG 100 134
JH254_RS15420 3312923 .. 3312935 +  -5.5  -2.54896   GGATGTTGCTTGGCC                TCGCT ATT GGCGA                TGCATTGGGTACAAC  46 187
JH254_RS15425 NONE
JH254_RS15430 NONE
JH254_RS15435 NONE
JH254_RS15440 3314572 .. 3314604 +  -6.3  -2.86343   TAACCAACCCGGCTT      TTGGTTAGCGACA CGCCAGT TGTCGCTAGCCGC      TCTGCTGCTTGGCCT  49 197
JH254_RS15450 3315424 .. 3315453 +  -5.8  -2.87132   TTTAAAAACCTTTGA       TACGCTC-TCCCT TTGCC AGGGAAGAGCCTA       TGTCTGCCAAGAGGA  49 149
        istB 3318249 .. 3318265 + -10.8  -5.54907   TCCACCAAAAGAAAA              GCCGGG ACAAG CCCGGC              TTTTTCTTTTATCAC 100 511
JH254_RS15610 3333178 .. 3333199 + -14.5   -2.9462   CCCCTGACAGACAAA           GGGCGTATC CCTC GATACGCCC            TGCTTTCAATCCATC  80 34
        greB 3336064 .. 3336087 +  -3.6  -2.90763   TGCGGCGCCAACCGG          CCCGCGCGGC AGTG GCCTGGCAGG           TATCTAAAGTATCGC  44 182
JH254_RS15630 3338502 .. 3338515 +  -9.5   -4.7497   CCAGAATGCAAAAAA               GCCCC GAAA GGGGC                TTTTTCATGCCTGCA  91 45
JH254_RS15650 3341231 .. 3341243 +  -4.7   -3.4252   GCACGCTACCCAAGC                CCCGC CAA GCGAG                TTATCATGAATACCC  52 115
        nfuA 3341893 .. 3341914 + -18.7  -4.21194   TTGCGGCAAAGAAAA           GGCCCCGCC AGTT GGCGGGGCC            TTTTGCATGCTGCGG 100 50
        gpmM NONE
JH254_RS15680 3347308 .. 3347324 +  -5.8   -4.8622   TTCACCTGACAAAAA              GTCTGC ATCGC GCAGGC              TTTTTGCTTGGCAGG  82 145
JH254_RS15690 3349147 .. 3349181 + -14.5  -2.60763   CCTCGGCTGATCCCC    G-GCCATCATGGCGCGT TCG AC-CGCCATGATGGCGC    CTTCTCCCCTCTCCC  78 31
JH254_RS15695 NONE
JH254_RS15720 3355078 .. 3355112 + -17.2   -3.0264   CATCCTCTGACGGAA     ACACATCGGGGCCG CATCCGT CGGCCCCGATGTGA     TATTGCACCGACTTT  89 31
        pssA 3356601 .. 3356622 + -17.3   -4.7497   CCCCGTCAGTGAAAA           GGCCTGCCG TTTC CGGCAGGCC            TTTTTCATGGATGAC 100 52
        recG NONE
JH254_RS15735 3361140 .. 3361162 + -13.5  -3.26471   CCGCCCAATAACGAA           CAAGGCCTC GCGAA GAGGCCTTG           TTGCTGTGAACATCA  81 30
JH254_RS15745 3363065 .. 3363083 +    -8  -3.64703   AACCTGACCTTCATG             TCGGCGGC GAA GCGGCCGG             TTTCGGTCGGCACGC  62 146
        glnA 3368215 .. 3368230 + -11.8  -5.98781   CCTTCCCATGACAAA              CCCGCC ATCT GGCGGG               TTTTTTTTCATTCTG 100 45
JH254_RS15770 3368992 .. 3369008 +  -7.3  -3.39327   TGCGGGTAAACTTGA              TGCACTA TAT TGGTGCA              TTCTAGGTGTACAGC  61 60
        glnL NONE
        glnG 3371581 .. 3371606 + -11.9  -3.90048   AAGCCTGACCAATCA         CACCCCGTTTG CTTG CAAACGGGGTA          TCTTTTTCAGGCGCC  85 79
         add 3372695 .. 3372708 +  -9.5  -5.55769   AAACCCAATAAAAAA               CCGCC GAAA GGCGG                TTTTTTATTGTCCAA 100 50
JH254_RS15815 NONE
JH254_RS15820 3378441 .. 3378463 +  -4.8  -3.52906   TACCCTATTGCCTAT           TGCTCAGAAT TCA ATGCAGAGCA           TTATATGAAGTTATA  52 134
JH254_RS15825 NONE
JH254_RS15830 NONE
JH254_RS15835 3381340 .. 3381360 +  -9.7  -4.29508   TATTAGTCTCATAAG            GCCGAGCTT AAA AACCTCGGC            TTTATTAGTATGGAT  83 366
JH254_RS15840 NONE
JH254_RS15845 3382515 .. 3382530 +  -4.6  -2.52516   AGTGCCGTAAGGCAC              CGAGGC TCCC GCCTCA               ATTAATAATAGGAAA  43 58
JH254_RS15850 3383690 .. 3383701 +  -4.4  -5.07652   ATGGTTAGGCATATT                CCAA TTGT TTGG                 TTTTGTTTTGCCACC  81 143
JH254_RS15855 3383970 .. 3383992 +  -7.7  -5.54907   ATTAAATTCTTAAAA           GGCTATCTG TTTAT CAGGTGGCC           TTTTTCTTTTATGGC  95 62
JH254_RS15870 3387461 .. 3387482 + -15.9  -2.57211   GAACTAATTGGCCCA           CGAGAGGGG GAAG CCCCTCTCG            CTTATCGAGGAGCAT  82 34
JH254_RS15875 3388436 .. 3388457 +  -5.7  -3.14132   GCACCCTGTGATCCC           GCGGTGGGG CATC CCCCACCCA            TTGATAAGACAAACG  52 30
JH254_RS15885 3390034 .. 3390053 + -11.4  -4.62002   CCGTCAGCCTCTTTT            C-GCGCCCC TGA GGGGCGCCG            TTTTCTGTGGTTGCT  95 326
JH254_RS15890 3391230 .. 3391260 +  -6.8   -3.7511   CCCGCGACGGCCAGG      CG-GGGAGGGCGC ACGGGA GCGCCTTGCCGCG       TTATCTTCTGCCACC  63 145
JH254_RS15920 3398124 .. 3398143 +   -15  -4.72986   CCCTTGATCAGTGCA            GGCAGCCC CCGT GGGCTGCC             TTTTTCATGCCCCTG 100 64
        fdhD NONE
JH254_RS15935 3402279 .. 3402296 + -12.7  -5.60993   ATGGATACCGTCCGA             CCCCTGC CATG GCAGGGG              TTTTTTTATGGCCGA 100 50
JH254_RS15950 3406565 .. 3406594 + -23.7  -4.06419   CGTTTGCCCAATGCC       GGAAGGCCCCCTC GTCG GAGGGGGCCTTCC        TTGTTTGTGCAGCAG 100 62
JH254_RS15960 3408686 .. 3408710 +  -4.1  -3.02144   CTCGCACACCCCATC          GAGCAGAGAGG AGG CCTCGGCGCTC          TCTTGCCACAGCTGC  44 263
JH254_RS15970 3411734 .. 3411749 + -11.8  -4.72272   TCTGTCTCTCATCAA              GGCGCC TGCG GGCGCC               TTTTTCATGGGGAGG 100 54
JH254_RS15975 3413048 .. 3413063 + -11.8  -4.27316   AAGAGAGTGTCCCTG              GGCGCC TGCG GGCGCC               TTTTCCATTGCGCCC  90 65
         nfo NONE
JH254_RS15985 3415104 .. 3415126 + -19.2  -2.62184   GCATCGGCTGAACGA           CAAGGGCGCC AAT GGCGCCCTTG           TCGTATCCGAAGGGG  91 70
JH254_RS15995 3417136 .. 3417167 +  -7.3  -3.21747   GTTTACATCCCCCCT     CGTCATCGACCCCGC CCGT GCGGGGTC--TGCCG      TTCGTGATGCAGTGA  59 48
JH254_RS16000 3418349 .. 3418367 + -11.7  -5.38958   ACCCGGTGCAAAAAT             GTGGCCC CAAGC GGGCCAC             TTTTTATTTCTAACT 100 52
JH254_RS16005 3419479 .. 3419496 +  -9.8  -3.86015   GAACCTTGATCGACA             CGGCCC CCTTGC GGGCCG              TTTCTGACAGGGGTG  75 32
JH254_RS16010 3420451 .. 3420467 + -13.7  -5.07652   CATTCCAATCAACAA              GAGCGCC ATG GGCGCTC              TTTTGTTTTGGAACC 100 49
JH254_RS16020 3424119 .. 3424136 + -12.7  -4.41548   CGACCAATGCAAAAA             GCCCGCT ATCA AGCGGGC              TTTTCTCAAATCTGG  95 138
JH254_RS16060 3427431 .. 3427459 +  -5.9  -3.28712   CCAGGGTTCGAAGAG        GAGGGCGGCAT CACGGGA AAGGCGCCCTC        TTGTGGAAGAGGCGC  54 58
JH254_RS16065 3427810 .. 3427848 + -21.2  -3.05022   AGCCTGACGATGGCA   CCAGAACAAACGGGACCC ACA GGGTCCCGTTTGTTTTTG   TCTGTGTCTGGACAG 100 44
JH254_RS16090 3431988 .. 3432017 + -20.9  -4.56775   CCCAGTATCCTGAAA       CAACAACGCAGCC CTCG GGCTGCGTTGTTG        TTTTTGCGCAGGCAT 100 61
JH254_RS16120 NONE
JH254_RS16125 3436362 .. 3436378 +  -4.3  -2.79915   AACTGCCTGTTCGCC              GCGTCGA CTG TCTGCGC              TGTGGTCGCGTCAGT  44 238
JH254_RS16140 3439573 .. 3439593 +  -5.4  -2.69647   CCGAAGTGGATTTCG           CCAGC-CTG TGAG CGGCGCTGG            TCATCTCCCTTTGTT  46 15
JH254_RS16145 3440609 .. 3440619 +  -4.6  -3.16564   GACTCATGGCCGCAG                 CGGG CAC CCTG                 TTCGTCAACTCCACG  48 112
JH254_RS16155 3441297 .. 3441319 + -13.5  -4.12397   CTGTGTGACAAGCAA           GAAGGAGCC CATGA GGCTCCTTC           TTTGTCATTGTGTGC  95 57
        norR 3452096 .. 3452123 +   -20  -3.71848   AGGGGCCCAAAAACA        GAAACCCCCTCG CTGG CGAGGGGGTTTC         TTGTTCATGGCACCC 100 57
JH254_RS16210 3454717 .. 3454742 +  -8.9  -4.41348   TCAAATAATCTGCCG         GTCGGGGTGAC GTGA GTCACCCCTCC          TTTCTTTGCGGGCAA  81 33
        livH 3455716 .. 3455729 +  -4.5  -2.77523   GAAAAACCAATCTAT               GCATG CCCT CGTGC                TGCTGTTCATGACCA  44 39
JH254_RS16220 NONE
        livG NONE
JH254_RS16230 NONE
JH254_RS16235 3459715 .. 3459735 +  -6.7  -2.78216   CAAGGCCCCGTACCA            GAAGGCGGG GGG CACGCCCTC            TACTTCCTCCACCTC  49 277
        glpE NONE
        glpG 3461757 .. 3461776 + -16.4   -5.1356   TTTATCATAAAAAAA            CGCCGCCC CAAG GGGCGGCG             TTTTTATTGGTCGGC 100 397
JH254_RS16260 3464797 .. 3464826 + -15.9  -4.82901   ACCCGCCGTAGATAG       C-ACAAACCCCAGC CAG GCTGGGGTTTGTCG       TTTTTATGGGGACAA 100 50
        rhlB NONE
        gppA 3473081 .. 3473116 + -10.4  -4.08692   TCCACCCGCCTGCTG    GAAGCCTGAACGGGCGC CCT GCGCCCGCTTCG-CTTC    TTTTCCCGCCCGTTC  81 17
JH254_RS16300 NONE
JH254_RS16305 3474567 .. 3474597 + -21.2  -2.88579   CCGAGTGCGAACAAC       GAAAGAGGGCCCGC AGC GCGGGCCCTCTTGC       TATCTGACACCTTGA 100 44
JH254_RS16375 3490013 .. 3490030 + -12.7  -4.60258   GGCAGATACAAAAAA             GCCTCCC GATT GGGAGGC              TTTCTTATTTAATGG  95 115
JH254_RS16420 3497051 .. 3497061 +  -2.4  -3.35542   GGATCCATCTCGGAC                 GCCG GTC CCGC                 CTTTTTGGCGATGAA  45 379
JH254_RS16430 3498838 .. 3498857 +   -15  -2.92371   ACCGACCATAAAAAA            CGCGGCCT GAGC AGGCCGCG             TCTGGTTCCATCACT  82 61
JH254_RS16445 3503326 .. 3503340 +  -5.6  -3.24747   GCATGACCGCCAATC               CCGGCA AGT TGCAGG               TTGATGGTCTCGGCG  51 458
JH254_RS16455 3505106 .. 3505125 + -13.6   -4.2693   CCAAAGAAAACACCG            TGACCGCC GAGA GGCGGTCA             TTGTTTTCATCCCTT  95 146
        trpS 3506639 .. 3506664 + -10.3  -2.70932   GATTGCTGAACCACT         CCTCGCGCCAC AACC GGGGCGAGAGG          TGGTTGGCACCGGCA  60 474
JH254_RS16470 NONE
JH254_RS16475 3508364 .. 3508380 + -15.1  -5.76633   GATTTGTCCCCTCTA              CCGGCGC CCT GCGCCGG              TTTTTTTATCTCTGC 100 109
JH254_RS16485 3509762 .. 3509781 + -10.6  -3.54146   AGGCTGACAGGAAAC            GGGCCCGC CCAG GCTGGCCC             TCTTTGGTTCCACAG  72 34
JH254_RS16500 3512962 .. 3512984 + -14.2  -5.60993   TACGGATATTTTGAT           CGGCTGGAAT ATG ATTCCGGCCG           TTTTTTTATCCGCCC 100 104
         gmk NONE
        rpoZ 3514137 .. 3514164 + -13.4   -3.3506   GTCAGTCGCTTCCCA        TAGTCGGCGCCC GCCC GGGTGCCGGCTG         TTCTCCCCATTTACA  81 41
        spoT 3516375 .. 3516401 +  -8.7  -4.08767   CGACAGAAAAACTGA        ACA-CAGGCGGC GCAA GCCGCCTGCTGC         TTTTCAAGAGATACC  75 26
        trmH NONE
JH254_RS16525 NONE
JH254_RS16530 3519086 .. 3519108 + -11.2  -3.18274   TGGGGTGACGGCAGA           CGCTGGGGTA CAC TCCCCCGGCG           TTCAATTGAAGTCGA  71 84
JH254_RS16535 3519963 .. 3519983 +   -14  -5.38958   TCGCGGATCGAAAAA            GGGTGGCC CATGT GGCCACCC            TTTTTGTTTCTCGCT 100 54
JH254_RS16565 NONE
JH254_RS16570 NONE
JH254_RS16575 3526207 .. 3526228 + -15.9  -4.91712   CCCAGCCCACACAAA           CAAGGCCCC GAAA GGGGCCTTG            TTTTTATCCATTGGA 100 42
JH254_RS16580 3528270 .. 3528294 +  -7.8  -3.88291   ATCCAGCAGAACTGA         GC-ACCGGCTC TTGT GAGCCGGCCGC          TTTGTCCCCATCATG  69 26
        gorA 3529707 .. 3529728 + -15.9  -3.09759   TTAATCACACATGAA           GCCGGTCTG TGAT CAGACCGGC            TTCAATCACTGTGTT  85 37
JH254_RS16595 3532391 .. 3532414 + -18.2  -5.60993   TCCCCAAGCCTCGCA          GACACCGGCC TGTC GGCCGGTGTC           TTTTTTTCTGCCAGA 100 41
JH254_RS16600 3534550 .. 3534565 + -11.8  -4.80396   CCCCACGTTTATAAA              CCCGGC CAAA GCCGGG               TTTTTCCATGTTTTC 100 101
        kdpA NONE
        kdpB NONE
JH254_RS16615 3539222 .. 3539235 +  -9.5  -2.75481   TCGATCATCAAAAGG               GCGCC TGAG GGCGC                TCCTTGCCGTTCGGG  63 18
JH254_RS16620 3541910 .. 3541932 +  -3.3  -4.18018   TGCCCCTCAACGCAC           CGGCGGC CTGATGGTC GCCGCCC           TTTTCAATCAGCAAA  58 15
JH254_RS16625 3542707 .. 3542736 +   -10  -3.59979   CGAAACTGAAGCCGG       CATCGGCTACCG CTTTAT CGGCAGCTGATG        TTTCACGTGGAACGA  72 90
JH254_RS16635 3545021 .. 3545034 +  -2.5  -4.41456   TTATAACATCTTGAT               TTTAT TGAT ATAAA                TATTTTTTTGATGCT  63 263
JH254_RS16645 3546504 .. 3546525 + -15.9  -4.54047   TCGGCATGAAAAAAA           GAGGCCTGC AGAT GCAGGCCTC            TTTTCTATCAGGTGG 100 49
JH254_RS16660 NONE
JH254_RS16665 3549633 .. 3549651 + -11.7  -4.37527   CCCAGAAAACAAAAA             GCCGCTC ACGAG GAGCGGC             TTTTGATGGTTGTCG  91 80
        purM NONE
        purN 3554758 .. 3554781 + -16.8  -2.94144   AGCAGTAAGACACAA          CAAGGGAGGC TTAG GCCTCCCTTG           TCATTTCCATCGACC  87 49
JH254_RS16725 3561508 .. 3561528 +  -3.9  -2.64243   GACCTCGTCGTCGAC            ATCGATCAG GAT CTGAGCGAA            TAGTGTCGCCTGTCA  42 2
        ppk1 NONE
         ppx 3565178 .. 3565194 + -13.7  -5.48787   CCCTCTGTGCAAAAA              GGCAGCC GAT GGCTGCC              TTTTTTGTCTCTTGT 100 46
        flgA NONE
        flgM 3581001 .. 3581017 +  -3.6  -3.09516   TCTGGATAAACGGTT              GGGATG ATGGA CCTCCC              TTCGCTGCTGCGCGC  46 19
JH254_RS16820 3581724 .. 3581734 +  -3.2  -3.28924   AGCGCCGCCCATCCA                 CCAG CAG TTGG                 TTGTAGGGCGCCGTG  46 329
JH254_RS16835 3585145 .. 3585161 +  -5.7  -3.58854   CGTCCAGGATCTCCA              GCTCCGC AGG GCGGGTC              TTGTCGTTCTCGTTG  57 324
JH254_RS16845 3587308 .. 3587318 +  -6.8  -2.78715   CTTGACGGTGCCCAC                 CCTG TAG CAGG                 TATGCTCGACCCCTT  51 330
JH254_RS16855 3588294 .. 3588321 +  -4.6  -3.90744   GGAAACTTCCCATCA        TGGGTCAGGCCC TCTT GGGCCCACCCCG         TTATTTCGGCAGGAC  59 50
JH254_RS16860 3590242 .. 3590263 +   -13  -4.15044   GGCCCCAAAACAAAA           GACCCCGC ACATTG GCGGGGTC            TTTGTTACAACCGGG  91 57
JH254_RS16875 3592160 .. 3592184 + -15.7  -4.27467   CCATGAAAACAAAAA          GCCGTGGCACC AGA GGTACCACGGC          TTTCTTAAATTCTGC 100 355
JH254_RS16915 3599111 .. 3599133 + -17.8  -3.32844   CGCCACAAACGACAA           GGGGAGCATC ACG GATGCTCCCC           TTGTCACATCGGGCA  91 55
JH254_RS16935 3605810 .. 3605831 +  -2.9   -4.0162   CTCGGAGCTGTAGTC           GCTGGCG TGGTGTTT CTCCAGC            TTTCTGATCTCCGCA  58 488
        cysM 3612113 .. 3612126 +  -8.1  -3.28712   GCAACTGGTCCCTGT               CCGCA TCCT TGCGG                TTGTAGAGCAGGGCG  60 85
JH254_RS17000 3616336 .. 3616361 + -16.3  -3.04144   GACCCGACAACAACA         TGAAAAGGCCC CTCG GGGCCTTTTCA          TGTTGGGGGTCGCAC  87 39
        aspS 3626612 .. 3626629 + -12.7  -3.71649   GTTATCGGCAACAAA             GGCCGCA GCGA TGCGGCC              TTTCCCGTTTCCCCC  85 44
JH254_RS17050 3627796 .. 3627813 + -12.7  -5.71712   TCACCTTCGCAAAAA             CGGCAGC CCGG GCTGCCG              TTTTTTTATGTGCCA 100 387
JH254_RS17055 3630038 .. 3630056 +   -16  -4.34402   CAGACCATAAAAAAA             CGGCAGCC ACT GGCTGCCG             TTTTCGTATCCGAAG 100 424
JH254_RS17075 NONE
JH254_RS17080 3637912 .. 3637925 +  -9.5  -5.52384   ATCACTTGAGACCCC               GCCCC GTGC GGGGC                TTTTTTTGATCAGGA 100 170
        glnS 3639828 .. 3639844 + -12.3  -5.46657   TGCGGACACAAAAAA              GCCAGCA TCA TGCTGGC              TTTTTTATTGCGCTG 100 82
JH254_RS17095 3641024 .. 3641046 + -19.2  -3.05384   CTGCTGCAGATGCAA           CAAGGGCCCC GTC GGGGCCCTTG           TTGCATGAAGAGGGA  95 45
        seqA 3643771 .. 3643791 +  -3.8  -3.55761   ATGACGAGGATCTGA            CGGCTCGG GTGTG CGGCGCCG            TTTAACCCATCAATG  52 0
JH254_RS17125 3645526 .. 3645546 + -12.6  -5.71712   ACAACCCATGTGAAA            GAGGAGCC CTGGT GGCTCCTC            TTTTTTTGTGTCGGG 100 52
JH254_RS17135 3647037 .. 3647052 + -11.8  -4.43309   AAACGAATAAAAAAA              CGGGCC TGCG GGCCCG               TTTTCGTTGGCATTG  91 31
JH254_RS17200 3660348 .. 3660365 +    -4  -4.37092   GTGCATGTCAAGAGG             AGGGCC GCCGAG GGCCCC              TTTTATCAGGCGGAT  66 63
JH254_RS17255 3673599 .. 3673609 +  -4.6  -3.29364   AGAGCACCAGCAGCA                 TGCG ATT CGCG                 TTCATCCTTCCTCCT  50 207
JH254_RS17270 3676654 .. 3676669 +  -6.8  -3.40403   GTGGGAGATGATGTT              GAGGCG CACC CGCTTC               TTGTCCTCGGAGCGG  57 157
JH254_RS17290 NONE
JH254_RS17295 3680344 .. 3680375 + -17.4  -3.73144   GCGCCAGGCACAGAC      ACAGAAGGCGAACC CCAG GGTTCGCCTTCTGC       TTATCTTGCTGGTCT 100 70
JH254_RS17305 NONE
JH254_RS17310 3683521 .. 3683552 +  -6.6   -4.0044   CCGGGGTCGCAACGT      GAGTCGGGTC ATAGGCAAGGGG GGCCCGACTC       TTTATACTGCTGCTT  66 48
JH254_RS17315 3684152 .. 3684183 + -11.4  -3.02511   GAGTTCCGCTAGGAT      GACGGCGGGGGAGC CCTC GCTCCCCCGCAGAG       TGTTGCACCGGTAAC  70 29
JH254_RS17320 3684985 .. 3685004 + -12.2  -5.76633   GTGTCTTCCTTTTTA            CCCATGAC CCCG GTCATGGG             TTTTTTTGTCTGTGG 100 55
JH254_RS17325 NONE
JH254_RS17330 NONE
        phrB NONE
JH254_RS17340 NONE
JH254_RS17345 NONE
JH254_RS17350 NONE
JH254_RS17355 3691730 .. 3691766 +  -3.6  -3.14132   ACACACCCGTTTAAT   TCCGCTTCCTGGTGTTG TCAG CAGC-CCATGGTGCGGG    TTCATCCCAACCGAA  46 46
JH254_RS17360 NONE
JH254_RS17365 NONE
JH254_RS17370 NONE
JH254_RS17375 NONE
JH254_RS17380 3694878 .. 3694889 +  -5.8   -3.7456   GGATCGGCAAGGCAC                GGAC GATT GTCC                 TTTGAGTCTGCTTCT  61 81
JH254_RS17385 3695514 .. 3695532 + -13.8   -5.5762   ATTTCCCACCCGCTT             GCCGCCCG ATT TGGGCGGC             TTTTTTCTATTTGAT 100 118
         hcp 3697350 .. 3697369 +   -15  -5.02476   ATGTTGTAAGCCTTT            GGCGAGCC TGAT GGCTCGCC             TTTTTTCAACGCTAT 100 68
JH254_RS17395 3698425 .. 3698436 +  -4.4  -3.25942   GTGAGCCTGGAGTAT                TGAC GGGC GTCA                 TTGGTATCCCGAGCT  49 23
        galE 3699670 .. 3699689 + -16.4  -5.14563   GCCTGAACAGCAAAA            CGCCCCGG CATG CCGGGGCG             TTTTTTCATGAACAA 100 157
JH254_RS17410 3700757 .. 3700781 + -14.4  -5.47431   TCCGCCATCTATATA          GCCCAACTGA TTTAT TCAGTTGGGC          TTTTTTGTGTCTTCG 100 34
JH254_RS17455 3708301 .. 3708311 +  -6.8  -3.60475   GGCGCACCGGGTATC                 GGTG TAG CACC                 TTTACCCAATTTATT  60 46
JH254_RS17480 NONE
JH254_RS17485 3716022 .. 3716040 +    -6  -3.52874   CTGATTGCAGTACTC             CGCTTAAG TAA CTTAAGAG             TGTTGTTATATAGGG  56 79
JH254_RS17490 3717100 .. 3717111 +  -5.8  -2.71144   CGATAAGACGCTTGA                GCAC GTCA GTGC                 TCATTAGGGAAGGTG  48 35
JH254_RS17495 3717622 .. 3717637 +  -2.5  -2.91395   CGCTCGCCTAAGGAG              GGTGC GAATAG GTACC               ATTTCTAAAAAAAAT  41 190
JH254_RS17500 NONE
JH254_RS17505 NONE
JH254_RS17510 3723631 .. 3723650 +  -9.2  -5.11033   CTGATTAATGTCGAA            GGGGCTGG TTAA CCAGACCC             TTTTTTAGGGTTATG  91 14
JH254_RS17520 3725516 .. 3725547 + -15.2  -3.74526   AAAAAAAAGAACATA      GAAGGAAGCAGCCT TGGT GGGCCGCTTCCTTC       TTATTCAGTTGGTGA  95 39
JH254_RS17535 NONE
JH254_RS17540 3731666 .. 3731680 +  -2.8   -4.7416   TTTTTAGTTAAAGAA               TGTAAC CCG GTTTCA               TTTTTAGGCTTTTAG  70 463
JH254_RS17550 3732069 .. 3732086 + -11.3  -5.61596   CCCGATATAAAAAAA             CCGACAC CCTG GTGTCGG              TTTTTTTATGGGGCT 100 101
JH254_RS17575 3739102 .. 3739130 + -17.5  -3.60234   CGGACGTCTGAATGC        AAGAAGGGGAGCC ATG GGCTCCCCTTCTG        TTTGGGCGTGTGTGC 100 53
        puuR NONE
JH254_RS17610 3747947 .. 3747971 + -12.1  -5.67063   CTGGTGGCAACAAGC          AGAGGGAGGCG TTA TGCCTCCCTCG          TTTTTTTGTCGTCAA 100 65
JH254_RS17655 3760813 .. 3760849 +  -3.7   -3.8221   AGCGGGGCGGGTTGA   GA-GGGCA-CAGGGTGG CGCGT CCACCCGGGTGCCAGTC   TGTTTTCCCTTTTAT  55 42
JH254_RS17660 3761430 .. 3761442 +  -4.8  -3.06509   CATTTGTCCTGCATC                CCCT CCACC AGGG                TGTCGTTGTTTGACC  47 285
JH254_RS17700 NONE
        feoB NONE
JH254_RS17710 3769463 .. 3769480 + -11.3  -4.72272   TGCCCATATGCAAAA             GGGAACC CGAG GGTTCCC              TTTTTCGTGGCCGCC 100 45
JH254_RS17725 3771950 .. 3771960 +  -4.6  -3.63515   CCTGCCTGCCCCCCG                 GCGG GCC TCGC                 TTCTTGGGGATCCCG  54 76
        btuC NONE
JH254_RS17735 3773810 .. 3773847 + -12.2  -4.71776   ATCGGCCGCCAGCAA   GAATAAGGGGCCAGTAT CAGGA ATACTGGCCCCTT-TGC   TTTTATTCGCTGTTC 100 93
JH254_RS17745 3775607 .. 3775625 + -11.7  -4.72272   TCCTGACATAAAAAA             GCCCGTC ATCAC GACGGGC             TTTTTGCTGCGCAGA 100 60
        dapB 3781166 .. 3781181 + -11.8  -5.35222   GTACTGGTTGCCAAA              CCCCGG TCCG CCGGGG               TTTTTTGTCACTTTT 100 69
        carA NONE
        carB 3786198 .. 3786217 + -12.1   -5.4833   CTCGATGCACGCAAA            CCCCGCC AGCAAC GGCGGGG             TTTTTTATTGCCTGC 100 64
        leuA 3788407 .. 3788437 + -14.1  -5.24129   CCGTCCCGGTTGCAA       CAATCCCCTGACC CATAT GGTGAGGGGATTG       TTTTTTATGGAAAAA 100 111
JH254_RS17790 3789584 .. 3789599 +  -2.4  -3.02043   CCTCTCATTCGCGAT              GAGGGG CAGG TCCCGC               TCTTCAGGAAGCCTT  41 139
JH254_RS17795 3790793 .. 3790818 + -19.1    -4.431   GATTTGCTGAAATAA         CAAAGGCGGCC AATT GGCCGCCTTTG          TTTTATGCCTCCGTC 100 39
JH254_RS17815 3794599 .. 3794616 +  -9.1  -3.10959   ATACAGGCCATTTGA             GGCGGCA TTCC TGTCGCC              TATCTGTTACACTTC  63 97
JH254_RS17820 3796116 .. 3796130 + -12.8  -4.02334   CGTTTACTCTCCAAA               GGCGCC ACT GGCGCC               TTTGTGCTGTCGATG  89 73
JH254_RS17825 3796840 .. 3796856 + -10.8  -5.60993   CTTCTCATCCCGTCA              CCCGGC CCTGC GCCGGG              TTTTTTTATGGCAAA 100 47
JH254_RS17830 3798124 .. 3798139 + -11.8  -5.00616   ATTGAGTTGCAAACA              GGGGCC GGAT GGCCCC               TTTTTTGACGGAGGC 100 36
JH254_RS17835 3798914 .. 3798926 +  -6.9  -2.78463   AACGGCAGGTCGGTG                GCGGT GTT GCCGC                TCTGGTGAACCCCCT  51 350
        nrfA NONE
        nrfB 3805561 .. 3805571 +  -2.4  -2.62983   AGCCTGGGCAAGGAG                 GCGC CAT GAGC                 TGCTCTCGCCGTGAC  38 17
        nrfC 3806328 .. 3806348 +  -2.5  -3.78409   TAACAGCAGGAGGAA            TGGATCATG TTG CATGACGCA            TTTCACTTCCCTTCA  51 107
        nrfD 3807299 .. 3807332 + -22.5  -4.24342   TTAAAGGTATGCTCA     CCAGCGCCAGCCACC CTCG GGTGACTGGCGCTGG      TTTGTTGCTGGCCCA 100 37
        nrfE NONE
JH254_RS17870 NONE
        nrfF 3811371 .. 3811383 +  -9.1  -2.92656   TGGCGTGTCTGCCAT                GGCCT GAC AGGCC                TCTATGACTCCCTTT  61 203
JH254_RS17880 3812481 .. 3812508 + -13.5   -4.7497   GGCTACGAGAACAAG        GGCCCCCG-AAC CGGCA GTTGCGGGGGCC        TTTTTCATGAGTGGC 100 42
JH254_RS17885 NONE
JH254_RS17890 NONE
JH254_RS17895 3815730 .. 3815752 + -19.2   -5.4505   AAGTCTGCGAAAAAA           GAGGGCGTGC CTG GCACGCCCTC           TTTTTTCTTGCCCCC 100 62
JH254_RS17915 3821655 .. 3821673 + -11.6  -3.53761   GCCGGACACAAAAAA             GCCGCCAG GAT CAGGCGGC             TTTCACCACGGGTTG  75 41
JH254_RS17930 NONE
JH254_RS17935 3826413 .. 3826425 +  -2.6  -3.91897   GGCTCTCCCCCAGCT                GGGC AATGG GTCC                TTTGTGGGTGAGCAC  54 180
JH254_RS17950 3828948 .. 3828973 + -20.5  -2.58418   CCCATGACAGTCACA         CGGAGGGAGGC GGAT GCCTCCCTCCG          CCTTTTCTCTCCCGC 100 64
JH254_RS17955 3830258 .. 3830271 +  -5.2  -2.62184   TGCAGGCGAGCCGCA               GCGC GAGCCA GCGC                TAGTCTGACAACCCG  46 4
JH254_RS17960 3831576 .. 3831594 + -14.6  -4.51238   GACGCAATAAAAAAA             GGGAAGGC AAT GCCTTCCC             TTTCTCTTTTCTGCC 100 66
JH254_RS17970 3832769 .. 3832784 +  -6.2  -3.14132   GACCAGGTTCATCGG              GAAATC CCCG GATTTC               TTGATACAACGCGCC  52 36
JH254_RS17975 NONE
JH254_RS17980 3833050 .. 3833068 +   -16  -5.38054   CACGCTGTCTGTTTG             GACCGGCC ACT GGCCGGTC             TTTTTGTTTCTGCGC 100 82
        katG 3835715 .. 3835732 + -14.1  -5.24129   GCGCCCCGTTCCCAA             CGCCCCG CGAA CGGGGCG              TTTTTTATGGGCCGC 100 53
JH254_RS18010 NONE
JH254_RS18015 3838609 .. 3838650 + -23.3  -3.57144   ATTGCCGGTTACCGG AAAAACAAAAGGCCCCGTC TTGC GACGGGGCCTTTTGTTTTA  TTTGGCGGTGAGGGA 100 198
JH254_RS18030 3840951 .. 3840973 + -16.3  -3.83205   ACTCCCATAGACAAA           GAGGGCGCC AGATG GGCGCCCTC           TTTGGTGTCCAGGCT 100 40
        tsaD 3853649 .. 3853663 + -12.8  -4.89233   CACGACAAAAAGAAA               GGGGCC TGC GGCCCC               TTTTTCATCTTGATG 100 52
        barA 3871593 .. 3871617 +  -8.6  -2.71924   TTTTCTGACTGGACA         GGCGGCAGGTG GTAA CATCTGC-GCC          GTTTCCACAGGAGTC  56 47
JH254_RS18165 NONE
JH254_RS18170 3873134 .. 3873163 + -22.3   -4.2828   TTCCACTCCTGAAAA       CCACAAGGGACGC CGAA GCGTCCCTTGTGG        TTTTCATACCTGCGA 100 115
        nadB 3883894 .. 3883919 + -19.1  -2.62184   GTATGCCCTCCCCCA         GATGACCCCGC CCAG GCGGGGTCATC          TGCTATGAGCGGCAG  91 80
        ygfZ 3886132 .. 3886154 +  -4.6  -3.02511   CGCCTTTTGATAGCT           GATGCCGAGC TGG GCACGGCCGC           TCTTGAGCAGCTCGG  47 473
JH254_RS18250 3887216 .. 3887235 +  -3.4  -3.42354   GGACAAGCCCGGCGG            GCCTGCCG TAGC CTTCAGGC             TTGTGCCTTCAGCTC  48 107
JH254_RS18260 NONE
JH254_RS18265 3889847 .. 3889879 + -13.4  -3.55203   CAAGCTGCCCTGATA     CCGGGTGGCCCGTGC AACC GTGTGGGCC-CCCGG      TTTGACCGCCATTTT  84 28
JH254_RS18270 3890865 .. 3890879 +  -4.2  -3.53343   TCATCTTCCTGGTTT               CAATCC AAG GGACTG               TTTAAAAACGGCATT  52 496
        prfB NONE
        lysS 3894854 .. 3894873 + -16.4  -4.82901   CCATGGCAATCAAAA            CGCCCCGC AATT GCGGGGCG             TTTTTATGACGGACA 100 78
JH254_RS18325 3903738 .. 3903749 +    -3   -3.0089   AGCCAACCTGGAAAG                GTTA AATT TAAC                 TCATTGATTTTTATT  42 21
JH254_RS18335 3905547 .. 3905563 +  -6.5  -2.87463   CCCCTGGCCTTTGCC              CCCAATC GCT GAATGGG              TCTGTAACAGGCATT  51 42
JH254_RS18340 3906633 .. 3906654 + -13.1  -5.75342   TATTTGCTGAAGAAT           TGGTCAACC ACCA GGTTGACCA            TTTTTTTTACCCAAA 100 250
        yvcK 3911061 .. 3911077 +  -7.9  -2.51702   GAGTGCTCCAGCTCA              GCCAGCA GTC TGCCGGC              CTCTTGCTCATCTTC  50 93
        fadE 3915858 .. 3915876 + -11.7  -4.72272   CCTCTGATGCCAGAA             CGCCTCC CTTGT GGAGGCG             TTTTTCATGAAAGGG 100 43
JH254_RS18380 3917567 .. 3917589 + -19.2  -3.63627   ACTTGCGACCATGAA           GAAGCCGCCC ATT GGGCGGCTTC           TTTGCAATGTGCGCG 100 60
        rnhA NONE
        gloB 3921719 .. 3921731 + -10.5   -3.4072   CAAACCTTGATCAGG                GGGGC ATT GCCCC                TTATGATGCGAGCTG  72 42
JH254_RS18410 3923336 .. 3923356 + -12.6  -5.72616   TCGCAATCCAAAAAA            TACCCCGC TTGAT GCGGGGTA            TTTTTTTGTCTGCAT 100 48
JH254_RS18420 3924654 .. 3924680 +  -3.7  -3.44146   CACATAGGTGAAGAC        GCCC-TCGGTCAC GCA GT-ACCGCTGGGC        TTCGTTCTCCCGCAA  51 89
        raiA 3932642 .. 3932657 + -11.8  -4.78149   ATTCATAAAGCAAAA              GGCGGG TCAT CCCGCC               TTTTTGCATTCTACC 100 52
JH254_RS18460 NONE
JH254_RS18465 3933531 .. 3933547 + -10.8   -4.4595   CCATCTTTCAGAGAA              CCCGGC CTTGT GCCGGG              TTTTCGCTTTTCTGC  88 38
JH254_RS18480 3940284 .. 3940314 +  -5.4  -3.59979   CCGAGGGGCTGACGC       GGAGGCGCAA TTGCAGTAATC TTGCGCCCCC       TTTCCCCTCGCCGAG  56 29
JH254_RS18485 NONE
JH254_RS18490 3941428 .. 3941438 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  67 23
JH254_RS18540 3951477 .. 3951487 +    -4  -3.68619   ACACAAATGGCACAT                 GTTT TTT AAAC                 TTTAAATACGTTAGC  52 133
JH254_RS18565 NONE
JH254_RS18570 3959464 .. 3959476 +  -4.7  -2.55999   AAGATTGCGACATCC                GCCAG AAA CAGGC                CTTCCTCTCCCCTCA  43 166
JH254_RS18580 3961873 .. 3961892 +  -9.2  -2.87132   CACTCCTCCTGATCA            TTCGGGGG TTCG CCCCCGAC             TGTCTAAGCCACCGG  60 29
         pyk 3963495 .. 3963512 + -12.7    -5.626   TCCCTGCAACAAAAA             CGGCTCC CGCG GGAGCCG              TTTTTTTATGGGATC 100 51
JH254_RS18610 3972069 .. 3972100 +  -5.2  -3.23452   ATATGCCTTAACATC      ATGAGCCAACTC-AT AAA ATCGAGCTGGCTCAA      TTGACTTGTCCGGCT  52 40
JH254_RS18615 3972267 .. 3972312 +  -6.9  -3.61654   AAATATTGTAGATTT TCGTCTTGGGTACCACATG-GG GTA CCACATGTGGCACGCAATAAGA TTTAACCTAACTCTC  60 75
JH254_RS18620 NONE
JH254_RS18625 3976808 .. 3976841 + -18.3  -4.72729   GAATAAGCACACCTT     AAATAGCAGAGGGCC AAAA GGCCCTCTGCTATTG      TTTTGGTTTTAGTTA 100 77
        tadA 3983439 .. 3983456 + -14.1  -4.37871   TCCTCAAGATGACAG             CGGGGCC TGAT GGCCCCG              TTTGCTTTTATTTCA 100 16
JH254_RS18660 NONE
        pstA 3987539 .. 3987549 +  -2.4  -3.05384   AGCCATTACAGAGAC                 GGGC AGG GGCC                 TTCCCTGCCAACCAG  42 44
JH254_RS18670 NONE
        phoU 3989401 .. 3989415 + -11.4  -4.89009   CTGATTGAATAAAAA               GGCGCT TTG AGCGCC               TTTTTCATTGCATGT 100 93
JH254_RS18680 NONE
JH254_RS18685 3991501 .. 3991530 + -18.7   -2.9462   TGATCCCCTGTTTCA       CAAGAGGTCACCC CCCG GGGTGGCCTCTTG        TCGTTTCAGTGCCTG  95 71
JH254_RS18690 NONE
JH254_RS18695 3994088 .. 3994105 + -12.7  -6.26417   CCCTGTCATGAAAAA             GAGCGCC CCTG GGCGCTC              TTTTTTTTTATCCTG 100 52
        ylqF 4005842 .. 4005862 + -18.3  -3.44051   GCTTGATAGCAAGAA            GAGGCGGCC CTG GGCCGCCTC            TTCTGGTCATGGCGC  95 65
JH254_RS18795 4022292 .. 4022312 +  -4.5  -5.88565   CGCCGCGCCCCTCCT            CTTCACCCC ACC GGGGCGCGG            TTTTTTTCTTCTCAA 100 48
JH254_RS18800 4024437 .. 4024453 + -13.7  -5.67063   ATACCCCATGAAAAA              GGGAGCC TTT GGCTCCC              TTTTTTTATCCTGCC 100 49
JH254_RS18810 4027583 .. 4027608 +  -4.6  -3.44051   TCAGAATGATGTCGT         TGAGCTGGCG ATAGCG CTCCAGCTCC          TTCTGATCGTAACGG  53 32
JH254_RS18865 4039679 .. 4039698 +   -15    -5.626   GGCTACAAACAAAAA            CCGCAGCC CAAG GGCTGCGG             TTTTTTTATAGGCTC 100 191
JH254_RS18875 NONE
JH254_RS18880 NONE
        lpxH 4043248 .. 4043274 +  -3.6  -3.91897   GCCCTCTGCCTGCCA         TGGTCATGAGCG AGT CTCATATGACCG         TTTCTGACTCACCCC  58 42
JH254_RS18890 4043626 .. 4043654 + -15.9  -4.07885   CCCAGCCACCCATCG        ATGCGAGGGCGCC ACT GGCGCCCTCGCTG        TTTTCAGCCCCGCTG 100 43
JH254_RS18895 NONE
JH254_RS18900 4045447 .. 4045495 +  -4.3  -3.55444   GGGTGATGACTGACG CGATATGAGCCGGCTCGCCTGAC CAG GTCAGGCGAGCCTCTCCAGGGCA TTTCGCAGCTACACG  54 35
JH254_RS18905 4047308 .. 4047329 + -11.6  -3.92324   CTGGGAAGCACTCAG           GAGCCTGC CATCGA GCAGGCTC            TTTGATGTTCACACC  83 47
JH254_RS18965 NONE
JH254_RS18970 4058709 .. 4058731 +  -9.8  -2.54193   GCTAGGTTGCCAGCA           CGCCGTCC TTGTCTC GGGCGGCG           TGCCTTGCCATCGTC  62 36
JH254_RS18975 4060337 .. 4060355 + -17.4  -4.87665   CCGGAAAATGAAAAA             GCCCGCCG TGT CGGCGGGC             TTTTTATGGCTGAAG 100 43
        dinG NONE
JH254_RS19000 4067263 .. 4067279 + -13.7  -4.76041   GCACGCCTGCATCGA              GGGGAGC CTG GCTCCCC              TTTTTCATGGCTATG 100 49
JH254_RS19025 4071688 .. 4071707 +   -15   -5.2015   CTGCCATACAGAGAA            GAGGCGCC CATG GGCGCCTC             TTTTTATGTTCTTAA 100 197
JH254_RS19055 4078835 .. 4078872 +  -3.5  -5.36441   ACTGCCAGGTGCCAA   TCGGGTGGCA-TATCA ATCCGTG TGATGGTGCCAGCCGG   TTTTTTATATGGCCG  86 54
JH254_RS19060 4079924 .. 4079966 +  -3.9  -3.11118   GTCCGGCCCTGCCAC CTGGGTGGGGACGGCCAGG ACCAG TCTGTCCGTCAGCAACCTG TGTTCCCTCAGTTGT  47 428
JH254_RS19070 NONE
JH254_RS19075 4081484 .. 4081540 +    -5  -3.50853   CAGGTGCCGCAAGAT TGCCCGACGCTGGG-GGAAGCCTGCTC GGCC GAGTAGCGTTCCACCCGGTTGCGGCCA TTGTGCTTGGCCAGA  54 63
JH254_RS19090 4085512 .. 4085542 +  -5.5  -6.19443   TTGGGCCTAGAAAAG      GGTCATGACGGGGA TGAT TTCTCGT-GTGACC       TTTTTTTTTGATGTG 100 66
JH254_RS19110 NONE
JH254_RS19115 NONE
JH254_RS19120 NONE
JH254_RS19125 4091762 .. 4091777 + -10.4  -5.44119   CCAGCCAATAAAAAA              GCGAGC CTGG GCTCGC               TTTTTTTGCAATCAC 100 75
JH254_RS19145 4095712 .. 4095737 +  -9.8  -5.65177   CAGGCTGTGTAAGAA         TCCGAAACTC CTTGTT GGGTTTCGGA          TTTTTTTATGCGTAT 100 112
JH254_RS19275 4117348 .. 4117358 +  -5.4  -3.71284   CTTCCCGCTCGGTGA                 GATC CTG GATC                 TTCTCTTCGTCACGC  59 369
JH254_RS19305 NONE
JH254_RS19310 NONE
JH254_RS19315 4126718 .. 4126736 +   -16  -4.14243   GGCTGACAAGAAAAA             GGCCGGAC ACT GTCCGGCC             TTTTCGCATCCGATG 100 50
JH254_RS19325 4128033 .. 4128055 + -13.4  -5.09204   AATCCCTATCATCCC           GAGGGCAGCC TGT GGCTGCCCTA           TTTTTCTTCGGGTAT 100 49
        galU 4129053 .. 4129070 + -11.3   -5.1417   GCAGAATAAAAAACT             GGGCATC ATTC GATGCCC              TTTTTCATTTTATAA 100 63
JH254_RS19335 4130651 .. 4130672 + -17.3  -3.76775   ACAGCAGAGACCAAA           CAGGGCGCC CATG GGCGCCCTG            TTTGCATGTGTTCAC 100 50
JH254_RS19345 NONE
JH254_RS19350 4133553 .. 4133578 + -13.3  -3.27022   ACGGTTGATCCCGTC         GGGCCGG-CGTC CCT GATGTCCGGCCC         TTCATATCCCCTGCA  81 33
JH254_RS19355 4134325 .. 4134350 + -19.1  -3.61398   CCCTGTGAATGGCAA         CACGGTCAGCC CAGT GGCTGACCGTG          TTGTTGCAAGGCGCC 100 42
        dusB NONE
         fis 4140763 .. 4140788 + -17.7  -4.96848   TGCAGTGCAGACGAA         GGCGTATCCCA GCGA TGGGATACGCC          TTTTTCTATGCCCGG 100 56
JH254_RS19410 4146102 .. 4146125 + -16.8  -5.58454   GGGGAAATGCACGAA          GAAGGGAGGC TCAA GCCTCCCTTC           TTTTTTTGCTCTGAA 100 42
JH254_RS19420 4147412 .. 4147442 + -20.4  -3.04144   CCGGGTAAGTCGCAA       GGGGCAGGGGGGCG TGT TGCCCCCCTGCCCG       TCTTCGCAATGGGCG 100 68
JH254_RS19425 4148216 .. 4148239 + -19.6  -4.34402   TGCAGTCATGAAAAA          GGCCCCGCCA GTGA TGGCGGGGCC           TTTTGCTATCCGCCG 100 52
JH254_RS19455 4149792 .. 4149816 + -18.7  -3.04122   CTGGCTCTCGGCACT          CAAAGGCGGAC GAT GTCCGCCTTTG          TCATTTCTGCTCCGC  95 45
        pepQ NONE
JH254_RS19495 NONE
JH254_RS19500 NONE
        hemG 4163368 .. 4163385 + -12.7  -5.33405   TTCAAAGCGGCCAGA             GCCCTGC GTAA GCAGGGC              TTTTTGTTTGATAAG 100 52
JH254_RS19525 4166344 .. 4166363 +  -2.1    -2.974   TGAAGGCCTGACCAC            CATGAAC AGAACG GGTCATG             TGATTTGCCTGTTGC  41 38
JH254_RS19530 4167352 .. 4167377 + -19.1  -3.14132   ACCCGCCAGAAACGA         CACAGGCCCAC CGAA GTGGGCCTGTG          TTCATGGACGCAAGA  95 40
JH254_RS19550 NONE
JH254_RS19555 4171900 .. 4171919 + -12.2  -5.05782   TTCAGGCAAAAAAAA            TGGCGCAT TGAA ATGCGCCA             TTTTTTCGCATGGAT 100 131
        purU 4174382 .. 4174397 + -10.4  -5.26875   CGACCCCAGAAAAAA              GGCTCC CGAA GGAGCC               TTTTTTCATTGCGGG 100 50
JH254_RS19585 4178076 .. 4178095 +    -2  -3.29144   GTTTCTCGAACGGCA            GGGCGTGA CAGA TCACGGGC             TTGTCGGAAAGATCG  45 188
JH254_RS19595 4179633 .. 4179649 +  -6.5  -3.05384   AAACACGCCCGGGGG              CGTGTCG ATA CCACACG              TTAACTAGCAACACA  54 217
JH254_RS19625 NONE
JH254_RS19630 4183739 .. 4183754 +  -7.6  -4.62783   AGCATCTGTTGCTTG              CACACA ATAA TGTGTG               TTTTTCCGATCCCTC  79 85
JH254_RS19635 NONE
        yjjG 4186053 .. 4186076 + -16.8   -3.6502   AAGGGTGTAAAAAAA          CAAGGCAGCC CATG GGCTGCCTTG           TTTGCATCCGGCGTC  95 56
        cmoM 4192389 .. 4192413 +  -9.2  -2.87132   GATGCGGGATCCAGC         CGCCGGGG-CG CCAC CGACCCCGGCC          TATATCACCACGGCG  60 60
        mukF NONE
        mukE 4194511 .. 4194533 +  -3.4  -3.73402   TGCAACGTTAATGTG           CCGGCA CTGATGGTGTC TGCCGG           TTTGATGGAGAGTGT  53 30
        mukB 4199019 .. 4199038 +   -15  -4.18197   GGGTGAACACACAAA            CGGGAGGC TTGG GCCTCCCG             TTTTCCATGGGAAAT 100 65
JH254_RS19685 4199608 .. 4199634 +  -7.3  -4.16943   TCTTCTTCATTCCAT        TGGTGAGGTCGC CGAC GCGGCTTC-CCA         TTTTCCGGTGTGCCA  71 118
JH254_RS19690 4200263 .. 4200284 +    -5  -3.02511   GCCAGACACAAGGAT           GGCAGCCC CTACTA GGGTGGCC            TCTTCGGGCAATGAG  48 11
JH254_RS19695 4200898 .. 4200912 +  -7.2  -3.29829   GGTTATCCACCCCGT               TGAACA CAG TGTTCA               TTCTGCCCCCCTATA  59 143
JH254_RS19700 4201368 .. 4201390 + -11.3  -4.74103   GATCCTTGCCGCAGA           GCCCGATGG TCCCC TCATCGGGC           TTTTTGCCTTCAGCC 100 39
JH254_RS19705 4202223 .. 4202240 + -12.7  -3.45023   ATGCAGAAACGACAA             GGGGAGC CGCG GCTCCCC              TTGTCGTGATGGTGA  79 60
JH254_RS19715 4204524 .. 4204536 +  -3.3  -3.53224   GACCAAGCAGAAGAC                GCTGG AAA CCACC                TTTAAGAAGCAGCTA  48 214
JH254_RS19720 4206532 .. 4206553 +  -5.7  -3.65199   CATCGACATTGACCA           GCCGGTTGG CAAG CTGCCCGGC            TTTGCCTGCCGCCTT  57 363
JH254_RS19750 NONE
JH254_RS19755 4217067 .. 4217123 +   -16  -3.29263   AAGGCAGAAGTCTGA GGGGCG-GTTGTCCACCCTATGCTGGCG TGA CGT-GGCGTAGGGTGGACAACGCGCAGC TTGTCCACCCGCTGT  87 26
         ung 4222898 .. 4222928 +  -8.2  -2.94099   GGCCTGACGCCGTAA       ATGCACAGGGGAAA TGG TCTCCCCTGTGCCC       TCTGTGGTGAGAGGC  58 34
JH254_RS19810 4223617 .. 4223643 + -20.9  -4.87665   GTTCACCCATAAAAA         CAGCGCCCCGG TCAAT CCGGGGCGCTG         TTTTTATGGCTCCAC 100 47
JH254_RS19825 4227182 .. 4227199 + -12.7   -4.7497   TGCAAGGTGATTGAA             GGGGAGC CATG GCTCCCC              TTTTTCATGGGTAAA 100 49
      blaMOX 4228514 .. 4228538 + -17.1  -2.60075   TTCGCTGAGCCTTGA          GGGCACGCCGC ATC GCCGCGTGCCC          GTTACTTCGGACCCA  86 50
JH254_RS19835 NONE
        yidZ 4231446 .. 4231466 +  -6.7  -2.88861   AAATGGATGGATAAA            TGAAGGGGG AAG CCCCCTCCC            TGTCTCCCCCTGCTC  51 472
         tkt 4239100 .. 4239125 + -16.9  -5.27923   AGCCGGAAAATAAAA         CGCCCTCCATC GCAA GATGGGGGGCG          TTTTTTATGGAGTTA 100 83
JH254_RS19885 4240716 .. 4240730 +  -2.7  -4.28597   AGCGGGGCAATTCCT               CGGCC AGCCC GGCCA               TTATTTATTCGTTAT  61 484
JH254_RS19895 NONE
JH254_RS19900 NONE
JH254_RS19905 4243226 .. 4243247 + -17.3  -3.67564   AGCGAGATAAAAAAA           CAGCCCCGC AGGA GCGGGGCTG            TTTGCATGGCTGCTT 100 60
JH254_RS19920 4250823 .. 4250834 +    -3  -3.44991   TTGAAAAAAGATATA                GTTA TCAA TAAC                 TCTTTGCAGTTTGTA  48 127
JH254_RS19925 NONE
JH254_RS19930 4254997 .. 4255009 +  -5.5  -3.83026   CAGCCTTCGCCAGAT                GCTGT TTG ACGGC                TTTGATGTCAGCAGC  59 378
JH254_RS19955 4258849 .. 4258877 + -16.8  -3.51329   GGCGATGTGTCTCTT       GGGGCGGTGGGAC TGGT GTCC-ACCGCCCC        TTGTCGTTGGCGATG  93 128
JH254_RS19960 4260963 .. 4260999 +  -4.4  -3.65294   CCGCCTTCGTGAAGT   GAACCCCGA-AAGTTGG ACAC CCAACGAGTAGGGGTTC    TTCGTTTCTATGGGA  54 78
JH254_RS19965 4262522 .. 4262573 +  -2.2  -3.04263   CGGGGCCGGGCATCG GCCCCCGATCCGGTGTCGGGGAGA GTGGCG TCACCCCGGCGTCA-AT-GCGGGC TATTCGCGCTCCAGT  41 184
JH254_RS19980 NONE
JH254_RS19985 4268153 .. 4268169 +  -9.4  -3.54424   CACATAGTAGGTGAG              CCCTGC CAGCA GCAGGG              TTTCCACCCCTCCCG  68 331
JH254_RS20005 NONE
JH254_RS20010 4271876 .. 4271892 +  -6.7  -4.26589   TCACAGCATCGAGCA              TCAAAAA CAA TTTTTGA              TTTTCAATGTCTGAT  71 439
        hemA NONE
        prfA NONE
        prmC 4281230 .. 4281250 +  -6.7  -3.02263   GGCTCAGTGATATGA            CGGGCGGGC CCG GTCTGCCCC            TGTTCAAGGAAATCT  53 31
JH254_RS20095 NONE
JH254_RS20100 NONE
        kdsA 4283351 .. 4283369 +   -16  -5.30616   TTTTACTATCAAAGA             TGCCCCGC CAT GCGGGGCA             TTTTTATTTCCGTCA 100 48
JH254_RS20110 4284938 .. 4284953 + -11.8  -5.51046   TCACCCATGAAAAAA              CGGCCC GAGG GGGCCG               TTTTTTATCTCTTTA 100 62
JH254_RS20120 4287726 .. 4287739 +  -3.1  -4.78077   AATCACCAAACTGTC               CTGTG ACCT CATAG                TTTGTTTTGCTTCGA  70 483
JH254_RS20245 NONE
JH254_RS20250 4318982 .. 4318993 +  -7.2  -2.72568   GCAGGCCATCGAACT                GCGC AAAC GCGC                 CTCTTTCGTGTTCCA  53 271
JH254_RS20260 4320038 .. 4320071 + -12.6  -4.87665   GTCACTTTTCCACAC     TGATAACAGGGCACC CACAA GGTGCCCTGTT-TCG     TTTTTATGCCTGACC 100 45
JH254_RS20265 NONE
JH254_RS20270 NONE
JH254_RS20275 NONE
JH254_RS20280 4321888 .. 4321914 + -11.5  -5.18866   CCGCTCTACCTTTAA         CCCCGACATGC TTCAT GCGTGCCGGGG         TTTTGTTTATTTGGA 100 98
        radC NONE
JH254_RS20290 4322715 .. 4322739 +  -4.3  -3.14132   CCATAGCCTGACAGC          CGTCAGC AACGAAGATGC GCTGACG          TTGCTGGAAAAGGCC  47 115
JH254_RS20295 4323117 .. 4323138 + -11.6  -4.35524   CGATCCCCCCAACAA           GGCCACCT CACTAC AGGTGGCC            TTTTGCATTTCAAGG  89 154
JH254_RS20300 NONE
JH254_RS20305 NONE
JH254_RS20310 4324283 .. 4324305 + -14.9  -3.84451   ACACAAGACCTCCAG           CAGCCCCTC ACCCC GAGGGGCTG           TTTGCATTTGAAGGA  95 64
JH254_RS20315 NONE
JH254_RS20320 4325288 .. 4325298 +  -2.4  -2.73681   CCCCCCCCACTGGCT                 GGCC CTT GGCA                 TCATTGGAATCACTG  39 83
JH254_RS20325 NONE
JH254_RS20330 4326105 .. 4326129 + -15.8   -4.5187   AGTGTGTGGGTCTTG          GGGAAGGCCA ATTCG TGGCCTTCCC          TTTGCTTTTTTTACG 100 89
JH254_RS20335 4328185 .. 4328195 +  -8.2  -3.18264   CCTTGCCACCGCACG                 CGCC ATT GGCG                 TTCATCGCTCCACCC  60 200
JH254_RS20355 NONE
JH254_RS20360 NONE
JH254_RS20365 4336876 .. 4336894 +  -2.4  -3.08464   GAAGCCTTATTTCCT             CAAGTC AGAGAGC GGCTTG             TTAACTACATCCTCA  42 179
JH254_RS20385 NONE
JH254_RS20390 4343232 .. 4343248 + -10.8  -5.77988   CAACTCGATAGAAAG              GGGCCC ATTAA GGGCCC              TTTTTTTATATCTGT 100 47
JH254_RS20395 4347006 .. 4347020 +  -2.8   -3.7941   AACTGAGCGACAGAT               TTCGCA CTT TGCAAA               TTATTCTGCCCGGTC  53 226
JH254_RS20405 4349745 .. 4349757 +  -3.3  -4.46212   TTGGTTTAAGTTTGA                CCAAC TGA GCTGG                TTTTATCCTCACAGC  64 443
JH254_RS20420 4352904 .. 4352914 +  -3.2  -2.94322   CACCTTCTCAATATG                 TTGC CTG GCAG                 TGCTTTGAATCAGCT  42 477
JH254_RS20475 4362547 .. 4362572 + -14.7  -2.71125   CTCGACGCTCACTTC         CCATGGCGGCC CTCG GGCCGCCATGC          CTGTTTCTGCGCCAT  78 109
JH254_RS20480 NONE
        fliD NONE
        fliS NONE
JH254_RS20495 4365192 .. 4365213 +  -3.1  -3.80893   AAAAGTCACGACCGC           CAGTGATGAA TCA TTCGT-ACTG           TTTAGATTGTCGAGT  53 86
JH254_RS20500 4365905 .. 4365918 +  -2.3  -3.84451   AAATCCAATTCCAGA               AAGGC TACA GCCTG                TTTGAGTTTCNAAGA  51 124
JH254_RS20505 NONE
JH254_RS20510 4367147 .. 4367168 + -11.5  -4.42788   GCAACTTGCGCCAGA           CTCGGCGCT TCTC AGCGCCGTG            TTTTCTGACCTTCCA  91 149
JH254_RS20525 NONE
JH254_RS20530 NONE
JH254_RS20535 4372705 .. 4372716 +  -5.8  -4.37092   GTCACCCTACTGGTG                CTGC TCAT GCAG                 TTTTCTCCGCAAGAT  72 393
        hcp1 4375429 .. 4375460 +  -8.7  -4.89567   TAGCACGTAGATGTT      TCCCCAGCCTG ATTAATCCCG CAGGCTGGGGC       TTTTATGTTTTGCCA  90 103
JH254_RS20555 4376094 .. 4376118 +  -3.3  -3.57561   AGCGAGTTTGCTCAA          GGGGACAGCGG CTT TCGCCGCACCC          TTTACAGCATTGAGG  50 283
JH254_RS20580 4380816 .. 4380832 +  -4.3  -3.05596   CATCCAGCCAAGCGA              TGGCCTC TTG GGGGTCG              TTGAATGCCCGGATA  45 170
JH254_RS20595 4383919 .. 4383940 + -10.2  -5.76949   GCTTGTTGAAAAGAA           CAGGGAAC CATTGT GTTCCCTG            TTTTTTTTGGCGCTG 100 57
JH254_RS20600 NONE
JH254_RS20605 NONE
JH254_RS20610 NONE
JH254_RS20615 4386756 .. 4386767 +  -5.8  -2.94099   CGCTCCAAATTCGGT                GGCA TGGA TGCC                 TCTCTCATGGCGCGC   0 301
JH254_RS20590 4381992 .. 4382015 - -12.4  -2.73875   TGTGGCTGAATAGCA          GCCCCGATGA GTCA TCGTCGGGGC           GTTTTTTTATGCGCA  71 483
JH254_RS20585 4380770 .. 4380781 -  -7.2  -3.12895   TGGCGTATCAACACA                GGCC GGGT GGCC                 TACCGCGTCTGATAT  57 25
JH254_RS20575 4378721 .. 4378741 -  -5.4  -4.87803   TAGTCCGAAATAAAA            CCCACC TCTTTAATT GGTGGG            TTTTATTTTAATTAT  80 73
JH254_RS20545 4373054 .. 4373072 -  -2.4  -3.29829   CACACCGGGGCAGAA             TGCCAA GCATTAT CTGGCA             GGCGTTCTCCACGCA  44 525
JH254_RS20520 4367688 .. 4367704 -  -8.7  -4.32402   TGCCAATCAAAAGAA              CAGTGCC GGT GACACTG              CAAAGCGCTTGCTTA  79 0
JH254_RS20470 4360465 .. 4360485 -  -6.1  -4.75289   TATGACAACAGAAAA            GCGAACTTG GTT CAATCTCGC            CCCGGGCAGGGTGGG  78 62
JH254_RS20465 4359938 .. 4359969 - -13.9  -4.79667   AAAACCTAGTAAAAA      CAATGCCAGTCAG GCTTAA CTGACTGGCATTA       GGCCAAGGCGCCGGA 100 72
JH254_RS20455 4357968 .. 4357978 -  -5.4  -4.19817   GGGAGTTATGGAAAA                 CTCA CAG TGAG                 TTATGGAAACTCACG  67 36
JH254_RS20450 NONE
JH254_RS20445 NONE
JH254_RS20440 4354129 .. 4354183 -  -7.3  -3.14944   CAGTAGTAGATCGAA TGGTGAC-TGGTGGTGACAGACAGTGA GCG TCATCA-CTGTCACCACGTTGTCACCA CCATCAATCGATTAA  57 195
JH254_RS20435 4353135 .. 4353145 -  -5.4   -4.2558   TAGGTTTCATTAAAA                 TGCA AAG TGCA                 TGCCTACATAGCAGG  67 463
        fliB 4352183 .. 4352200 -  -4.8  -2.54634   GTGCACATCAGTAAT             CCGGTC CGGCGT GACCGA              CTGTTTTTGTTCAGT  43 282
JH254_RS20410 4349480 .. 4349491 -    -3  -3.66896   TTTATAGACATATAA                CTTA CTAC TAAG                 TGATGAAGCGTTGAT  50 323
JH254_RS20370 4336805 .. 4336827 -   -12   -4.4891   CCTAGTAGCATAAAA           GACACCGGTT TGA AGCCGGTGTC           AAGTGATAACTATAT  91 65
        dnaA 4315596 .. 4315606 -  -5.4  -3.03441   GATCAGGCTGGAACA                 TGCA ATC TGCA                 TCTGTGCACTCCGTT  48 47
        dnaN 4314446 .. 4314456 -  -2.4  -2.84812   AGGGACACGACTAGA                 TCCG CAT CGGC                 ATCACCACGTACTGG  39 10
        recF NONE
        gyrB 4310500 .. 4310512 -  -3.3  -4.11692   TATTTATTTTTAAAA                TCGAC TCA GTCGT                CTAGGGCAATTAAAA  58 440
JH254_RS20220 4309247 .. 4309263 -  -2.2  -3.04144   CTTTCATCTTCAACA             CGATGCC AAGG GGC-CCG              AGTCAATATCTATTG  41 45
JH254_RS20215 4308779 .. 4308789 -  -5.4  -3.11361   AAACCCGAACACAGA                 CACA GGC TGTG                 GTTACAGTTTTTTCA  50 27
JH254_RS20210 4306485 .. 4306517 -  -8.6  -3.69323   CTAGTATTACTCAAA     GGAGGCATCAATTGA ACCT TCAATTT-TGCCTCC      CTGAATATTACTAAT  66 66
JH254_RS20205 4306142 .. 4306168 - -16.7  -5.34365   GGATAAGAAGAAAAA         CAAGGCTGCTC AAACA GAGCAGCCTTG         TTGAATATTATCGGG 100 33
JH254_RS20200 4305389 .. 4305403 -  -9.2  -3.29263   ACACTTCTGCCATAA               CGGGGG CAG CCCCCA               AGGTTGCGAGCAATA  65 56
JH254_RS20195 NONE
JH254_RS20190 4302539 .. 4302566 - -12.8  -5.64274   TCATGCATAAAAAAA        GCCGTGACAGTA AAAA CACTATCACGGC         TCATTAGACTAACGA 100 60
JH254_RS20185 4300743 .. 4300772 - -15.9  -3.70902   TGCCTGAGATGGAAA       TG-ATAACGGCCGC AAG GCGGCCGTTATGCA       ACAACGCAGCTCTGT 100 48
JH254_RS20180 NONE
JH254_RS20170 4297541 .. 4297560 -  -4.9  -4.15044   TTCGTTGCGAAGAAA            GTGCCCC GTATGG GGGGCAT             ACCCGCTCAATCCCT  61 32
JH254_RS20165 NONE
JH254_RS20160 NONE
JH254_RS20155 4295742 .. 4295764 - -14.2  -3.64703   GGGTGGCGACTGAAA           CAAGAGGGCA TGG CGCCCTCTTG           TGTGGACTGTGGCGG  86 46
JH254_RS20150 4294066 .. 4294089 -  -3.6  -2.75975   TGGTAACAGATAGCA          GGGGAGCGGC AGAA GCCGGGCCGC           TCAGGGGGGCGAATT  43 26
JH254_RS20145 NONE
JH254_RS20140 4291134 .. 4291160 -   -13  -4.87665   CCGCACCGAGAAAAA         CGGCGCAGCC GATGGCT GACTGCGCCG         GCTGGCCCGTCAGCG 100 35
JH254_RS20135 NONE
JH254_RS20130 4289127 .. 4289142 -  -5.4  -4.83169   AGTCGCTGACAAAAA              CCGGTA AATT TACCGA               TCCGGTTGAGTTCAG  76 459
        grcA 4284938 .. 4284953 - -11.8   -5.1675   TCACCCATGAAAAAA              CGGCCC GAGG GGGCCG               TTTTTTATCTCTTTA 100 52
        lolB NONE
        ispE NONE
JH254_RS20065 4276307 .. 4276337 -  -9.1  -3.02829   CAGATTGGCCCAAGA      CACATCGACGAGGT CAAC ACCTC-CCGATGCG       GCCTCAACAAGGAGA  61 45
JH254_RS20060 4275129 .. 4275154 - -16.3  -5.09895   CAGGCACCCAAAAAA         CAAAAACCGCC ATTC GGCGGTTTTTG          TCACGACAGGGTCTA 100 41
         pth NONE
        ychF 4273072 .. 4273093 - -15.9  -5.36441   TGGCCAGATAAAAAA           GAGGCCAGC AAAT GCTGGCCTC            TCATGGGGTTAGACG 100 34
JH254_RS20045 NONE
JH254_RS20040 4272669 .. 4272697 -  -5.3  -2.74563   GCGATACCCCAACGA        CGATGCCTGACAG AGA CCATCAAACATCA        TTCAAAAAATGGCTG  47 35
JH254_RS20035 4272552 .. 4272582 -    -4  -3.07962   GGCGATACCCCAACA       GCGATGCCTGACAG AGA CTATCAAACATCAT       TCAAAAATGGCTGGG  46 33
JH254_RS20030 NONE
JH254_RS20025 4272345 .. 4272357 -  -2.7   -3.3903   GAATGATTGAAGGAA                CGTTT TTC AAACA                TGGTGGCTATGACGG  48 26
JH254_RS20020 NONE
JH254_RS20015 4271920 .. 4271934 -  -5.7  -3.80114   GATGAAGTGACCAAA               GCAAC TTAAT GTTGC               AGCAGTTAATTCAGN  61 215
JH254_RS20000 4268745 .. 4268762 - -14.1  -3.30771   TTACAGTTGTGACAA             CGGGCGC CGTG GCGCCCG              TTGTGTGTCGTTAAC  83 52
JH254_RS19995 4268331 .. 4268357 -  -7.3  -3.13728   AGCAGCCAGAGTGAA        GGGCGGTGCAGA CTCA TCT-CACTGCCC         CTTGAGCGGCGCACC  57 17
JH254_RS19990 4267895 .. 4267910 - -11.8  -3.62354   CCCGGAAATGAAAGA              GGGGGC CAAG GCCCCC               TGCTCGTATCTGTTC  79 52
JH254_RS19975 4264515 .. 4264542 -  -2.6  -2.77895   CGCAGCTGCAACAAG        GCGCCCATGG TCACATCC CCATGGGGGG         TGGCATGCCCCCGGC  39 8
JH254_RS19970 4262437 .. 4262457 - -12.6  -6.02914   GGGAGACAAAAAAAA            GACCGGGT ACGGG ACCCGGTC            AAAGAACCCGCGCAT 100 141
JH254_RS19950 4257007 .. 4257017 -  -2.4  -3.15544   TGCGACCCTGATCAA                 TCGC ATC GCGC                 CCCCGGCCAGCCACG  42 233
JH254_RS19940 4255205 .. 4255217 -  -4.8   -3.9534   AGTGACATCCAGAAA                CGGA CCGAC TCCG                GTCTTGGGTCGACCG  59 151
        gltB NONE
JH254_RS19910 4243226 .. 4243247 - -17.3  -5.72616   AGCGAGATAAAAAAA           CAGCCCCGC AGGA GCGGGGCTG            TTTGCATGGCTGCTT 100 56
JH254_RS19875 4235522 .. 4235538 - -13.7  -4.75518   GACACAAAAGCAAAA              GGGGAGC CAG GCTCCCC              TTTTATCACAACCTC 100 46
JH254_RS19870 4234935 .. 4234973 -  -8.8  -2.66634   CACCCTATCACAGGA  GCGCGACACG-GGGTGA CTCAAT CCGCCGTCGTGTCGCGC   TGCAACACCAGGGGC  59 4
JH254_RS19865 NONE
        rsmE 4233267 .. 4233292 - -12.6  -2.57132   CTCCCCCTTCACAAG         GGGGAGGG-GC CTGTT GCTCCCTCCCC         TTCGAAGGGGAGGGC  73 58
        gshB 4232186 .. 4232202 - -10.8  -3.64822   AGGGCGGCAGTCAAA              GGGGCC CTCAC GGCCCC              TTGTGTGTGTGTGTG  74 75
JH254_RS19850 4231450 .. 4231462 - -10.5  -3.61988   GGATGGATAAATGAA                GGGGG AAG CCCCC                TCCCTGTCTCCCCCT  74 91
        ruvX 4230977 .. 4230992 -    -6  -2.74334   CGAAAGAGAAGCAAG              GGGGAG GAGG CACCCC               GGTTTAGTCGTACTG  49 29
         tal 4223980 .. 4224004 - -13.6  -5.65177   ACAGGCACAAAAAAA         CCGGGCTGCCC TTTC GGG-AGCCCGG          TTTTTGCGGTGCCAC 100 73
JH254_RS19815 4223601 .. 4223659 - -21.9  -2.91695   TGCAGCCTGAAAGGA GGTTCACCCATAAAAACAGCGCCCCGG TCAAT CCGGGGCGCTGTTTTTATGGCTCCACT CGCTGGAGTGAAACA 100 58
JH254_RS19800 4221335 .. 4221349 -  -5.6  -3.07043   GGCATCAGCCGAACA               GCTCGC TAT GGGAGC               CAAGCCGCGCCAGTC  50 0
JH254_RS19795 4220461 .. 4220476 -  -2.4   -2.5333   TCAAGCACAACAGAC              GGTCGC ATGC GCATCC               TTTCTTATCGAAACT  38 171
JH254_RS19790 NONE
JH254_RS19785 4219761 .. 4219771 -  -2.4  -3.08679   TCGCGGGATCGAACA                 CGCC AGA GGGG                 CCGAACATCGGCGGC  42 49
JH254_RS19780 4219003 .. 4219015 -  -4.8  -3.04144   CGTCGATGGTCAAGA                CCTG ATCGG CAGG                ACAGGCGGCTACGCG  46 212
JH254_RS19775 4218613 .. 4218634 -  -2.3  -3.05715   AATGTGCTGATGGAA           GGA-GAGC TTCATTT GCTCATCC           ACTTGCGCAGCAGGC  42 12
JH254_RS19770 NONE
JH254_RS19765 NONE
JH254_RS19760 4217200 .. 4217214 - -11.4  -4.75954   AAAACGGAAAATAAA               GCACGC TAA GCGTGC               GTGGAGGCTGGCACC 100 16
JH254_RS19745 NONE
JH254_RS19735 4208930 .. 4208953 - -10.4  -5.46698   TTCAAAACTAAAAAA          GCACTTCCAT TAAA ATGAAAGTGC           TTTTGTTTTCAATGG 100 381
        istA NONE
        istB 4206254 .. 4206267 -  -3.8  -2.74784   AGCGTCCAAAATTGA               CCAG GGTTAG CTGG                CTGATTTCATCCTCT  43 18
JH254_RS19710 4202217 .. 4202246 - -22.3  -3.92869   GCAGGCATGCAGAAA       CGACAAGGGGAGC CGCG GCTCCCCTTGTCG        TGATGGTGACGGGGT 100 40
        elyC 4190572 .. 4190586 -  -2.8  -3.32727   GCAACATTATATGAA               TTGAAC CGA GCCCAA               GATAGCTGACCCGGC  46 103
JH254_RS19655 4189732 .. 4189772 - -18.3  -3.83205   AGGGTCCATAGGAAA  GCGATATGCAAAGAGGGGC GGG GCCCCTCTTTGCTTGGCGC  TTACTTGGCGGCGCC 100 26
        pfkA 4188622 .. 4188636 - -11.4  -5.60993   GCCCGCATAAAAAAA               CCCTCC AGA GGAGGG               TTTTTTGTCAGACCA 100 47
JH254_RS19645 4186053 .. 4186076 - -16.8  -5.41746   AAGGGTGTAAAAAAA          CAAGGCAGCC CATG GGCTGCCTTG           TTTGCATCCGGCGTC 100 43
JH254_RS19620 4182517 .. 4182546 - -23.7   -4.3467   ACCGCGATAGCAAAA       CAGGCAGGGCGAC AACT GTCGCCCTGCCTG        TTACACCCGCACACA 100 80
JH254_RS19615 4181177 .. 4181188 -  -3.6  -3.16039   AATGATGCTCATGAA                CGGA ATAC CCCG                 CCCACTGCGGTCAGC  46 245
        ruvC 4180449 .. 4180470 -  -3.7  -3.14211   AGTGTGGCGGAGCAA           GACGAAACCG ACC CGG-CTCATC           GCGGATATGTGATGA  46 207
        aqpZ 4179621 .. 4179636 - -10.4  -5.64274   TCAGGCATAAAAAAA              CACGCC CGGG GGCGTG               TCGATACCACACGTT 100 54
JH254_RS19590 4177788 .. 4177805 -  -6.9  -3.94409   CAGAGCATGGAGAAA             CGGCTGG AGAC CCAGCCT              GTCTACAAGCTGGAT  65 138
         cls 4175756 .. 4175774 -  -6.7  -3.14051   GGATGGGCATCAACA             CAAGCCA GACAA CGGCTTG             GGGTCCACGCTCTGG  54 44
JH254_RS19575 4174382 .. 4174397 - -10.4  -5.26316   CGACCCCAGAAAAAA              GGCTCC CGAA GGAGCC               TTTTTTCATTGCGGG 100 46
        ribB NONE
JH254_RS19560 4171900 .. 4171919 - -12.2  -5.81412   TTCAGGCAAAAAAAA            TGGCGCAT TGAA ATGCGCCA             TTTTTTCGCATGGAT 100 40
JH254_RS19545 4169389 .. 4169407 - -17.4  -5.61596   AGGGTCATAAAAAAA             CCGGGCCC TGA GGGCCCGG             TTCAAGTGAGGTTGG 100 80
        rlmF 4168327 .. 4168357 - -15.5  -3.92746   CTGAGCTGAAAAAGA      GACGGGGCCC-GTG TCGC CACTGAGCCCCGTC       CTCGATCATCTCCCC 100 31
JH254_RS19535 4167349 .. 4167381 -   -15  -3.86897   CTGACCCGCCAGAAA     CG-ACACAGGCCCAC CGAA GTGGGCCTGTGTTCA      TGGACGCAAGACGAG  95 45
JH254_RS19520 4164952 .. 4164974 -   -15   -5.4387   ACATAAATTAAAAAA           CCCAACCTAT TCA ATAGGTTGGG           CTTAGTATGTGGCGG 100 35
JH254_RS19515 NONE
JH254_RS19510 4163430 .. 4163453 -    -9  -4.75063   ACAAAACGGTAAAAA          GGACTATTTT TCGC AAAATAGCCC           TTGTCATCCCGGCGC  86 427
JH254_RS19485 4157202 .. 4157221 -   -15  -4.66264   CAAAACGGGCAAAAA            GAGGCGCC TTGC GGCGCCTC             CGATGGAGATGAGCG 100 46
        fadB NONE
        fadA 4153498 .. 4153519 - -15.1  -5.77677   GAAAAGAATAAAAAA           GGCCGACCC AAAC GGGCCGGCC            AACACGCAGATTACG 100 212
JH254_RS19470 NONE
JH254_RS19465 4151080 .. 4151095 -  -3.2  -2.69799   CCACTTCATACATTA              CTGCCT TGGT AGGGAG               AGGGTGGCCTGCAGG  40 7
JH254_RS19460 4149796 .. 4149812 - -13.7  -3.64703   CTCTCGGCACTCAAA              GGCGGAC GAT GTCCGCC              TTTGTCATTTCTGCT  84 30
        tusA NONE
JH254_RS19445 4148695 .. 4148709 -  -5.6  -2.87132   CGCTTTGTTTAGACA               GCTGCT GTG AGCTGC               ACTTCTACCCTGTAG  47 4
JH254_RS19440 4148577 .. 4148588 -  -3.6  -2.87132   CGCTTTGTTTAGACA                GCCG CAGT CAGC                 TGCACTTCCACCTTG  43 7
JH254_RS19435 NONE
JH254_RS19430 4148216 .. 4148239 - -19.6   -4.7497   TGCAGTCATGAAAAA          GGCCCCGCCA GTGA TGGCGGGGCC           TTTTGCTATCCGCCG 100 120
JH254_RS19415 4146102 .. 4146125 - -16.8  -3.25088   GGGGAAATGCACGAA          GAAGGGAGGC TCAA GCCTCCCTTC           TTTTTTTGCTCTGAA  90 41
        glyQ NONE
        glyS 4142254 .. 4142283 - -19.5  -3.13164   TTGGTAAGGACTTAA       TAAAAACGGCGCC TTTC GGCGCCGTTTTTA        ATATCACCTACCCAA 100 47
JH254_RS19390 4140763 .. 4140788 - -17.7  -3.27022   TGCAGTGCAGACGAA         GGCGTATCCCA GCGA TGGGATACGCC          TTTTTCTATGCCCGG  91 52
JH254_RS19375 4137713 .. 4137723 -  -2.4  -3.54543   ATTCACCTCGGCAAA                 CGGG CGA CCCT                 TGGCGGTCGAAACAG  48 71
JH254_RS19370 NONE
JH254_RS19365 NONE
JH254_RS19360 4134327 .. 4134348 - -15.9  -3.09492   CTGTGAATGGCAACA           CGGTCAGCC CAGT GGCTGACCG            TGTTGTTGCAAGGCG  85 42
JH254_RS19340 4130651 .. 4130672 - -17.3  -3.90358   ACAGCAGAGACCAAA           CAGGGCGCC CATG GGCGCCCTG            TTTGCATGTGTTCAC 100 50
        cysQ 4126718 .. 4126736 -   -16  -5.18726   GGCTGACAAGAAAAA             GGCCGGAC ACT GTCCGGCC             TTTTCGCATCCGATG 100 46
JH254_RS19300 4123395 .. 4123406 -  -5.8  -3.02947   TAGCCATCAGATATA                GCCA TAAA TGGC                 CATGAAGTGACACAG  51 5
JH254_RS19295 4121564 .. 4121595 - -16.7   -4.4017   TCAATTGTGACAAAA      CGAAGACGGGAGCC TCATC GGCTCCCGTCT-CG      TGAGGTGTCAGACAC 100 33
JH254_RS19290 4118976 .. 4118991 -  -5.4  -2.52676   TATCTCCTTAATTTA              CGGGAT CGGT ATCCCA               TATTTGTCAGGGGGT  46 252
JH254_RS19285 4117938 .. 4117948 -  -2.4  -3.89346   TGTTGACGGCATAAA                 TGGC TAC GCCC                 GGATTGGCTTGTGCC  54 84
JH254_RS19270 4114472 .. 4114484 -  -5.5  -4.07885   CACCCTGGGTCAAAA                GCCTC AAA GAGAC                CTTATTGACCTGAAA  64 244
JH254_RS19265 4113847 .. 4113858 -  -3.6   -2.6155   GTGTTGAATACGAAT                CCGA TACG CCGG                 GAGATACCCCGGCAT  42 40
JH254_RS19260 4112429 .. 4112452 -  -2.3  -3.68569   CGACTCACCGAACAA          GCCA-GCAGC CAAGC GCAGCGCGGC          AGTTGTGGATCCAGG  48 127
JH254_RS19255 4111103 .. 4111131 - -23.3  -4.90266   CGTAGCAATGAAAAA        GCCCCTGGCCAAT CAG ATTGGCCAGGGGC        AGGGTTGTGGCTATG 100 36
JH254_RS19250 4110710 .. 4110720 -  -8.2  -3.53811   CCCACGCTCCTTAAA                 CGGC ATA GCCG                 AGAATGTTGTTCATA  64 10
JH254_RS19245 4109867 .. 4109885 - -11.7  -5.54907   TTTAGAAAACAAAAA             GCCCGGT ACGAG ACCGGGC             ATAGCGAGGTTGGGC 100 46
JH254_RS19240 NONE
JH254_RS19235 NONE
JH254_RS19230 4108535 .. 4108561 - -11.5  -4.82678   CCAGAAAAAGCAAAA         CCCCGGCACGC AGGAA GCATGTCGGGG         TTAAAGGTAGAAATG 100 65
        radC NONE
JH254_RS19220 4107712 .. 4107734 -  -3.4  -2.76696   GCCCTCTCCAACAAT           GCCTGC GCATCGTCGTT GCAGGC           GGTAGCCAGACGATG  41 117
JH254_RS19215 4107371 .. 4107392 -  -9.4  -4.35524   CCTTGAAATGCAAAA           GGCCACCT TCGGTG AGGCGGCC            CTGTAGGTGATGTCG  79 95
JH254_RS19210 NONE
JH254_RS19205 NONE
JH254_RS19200 4106209 .. 4106233 - -11.4  -3.36823   TTCCTTAAAATGCAA          GCAGCCCCTC GGAGT GAGGGGCTGT          ATGGGGTCTTGTTTG  74 57
JH254_RS19195 NONE
JH254_RS19190 NONE
JH254_RS19185 NONE
JH254_RS19180 4104329 .. 4104347 -  -4.6  -4.42386   TCTTTATCGATAAAA             TTGGCT GAAGTGT AGCCAA             TCATCATCCCGAAGG  68 147
JH254_RS19175 4104028 .. 4104038 -    -4  -3.02511   TTGATGTGGTGAATA                 GAAT GTC ATTC                 CTGATTGCCTTCTTG  44 20
JH254_RS19170 NONE
JH254_RS19165 NONE
JH254_RS19160 NONE
JH254_RS19155 NONE
JH254_RS19150 4095646 .. 4095662 -  -5.7   -4.7497   TGCAGCCATGAAAAA              CGGGGGC CTG GCCCCTA              ATGCCGATCAGTTAA  78 270
JH254_RS19140 4093641 .. 4093666 -  -8.2   -5.1287   CCCAGATGCAAAAAA         GCCGGTGCGC AGGGTA GCACACCGGT          TGGTCGGCTTCTAAC  90 70
        earP 4092383 .. 4092404 -  -3.7  -3.64812   TTTCATGTAAAAAAT           TCCTGTTCGT GAA ACGGAC-GGA           TAAAAACTGCCAGAT  52 40
         efp 4091762 .. 4091777 - -10.4   -5.4833   CCAGCCAATAAAAAA              GCGAGC CTGG GCTCGC               TTTTTTTGCAATCAC 100 55
JH254_RS19105 NONE
JH254_RS19100 4085945 .. 4085958 -  -3.1  -3.95324   TAGGGGCAACAAGAA               CGAAGC TGC GCT-CG               GCGGCGCCGTCGGTG  56 299
JH254_RS19085 4083006 .. 4083026 -   -14   -4.3467   AGTGCGAGATGAAAA            CGCCCCCT GGTGG AGGGGGCG            TGAAGGCTTACTTGA 100 33
JH254_RS19080 4081119 .. 4081136 -  -7.7  -2.62396   GAGGGTGGCAGAGCA             CCGGC-TG CTG CACGCCGG             ATTGCCGCTGCCCCG  51 357
JH254_RS19065 4079062 .. 4079083 -  -7.1  -2.73364   TGCGCACGCCAATCA           GGCGCTGGC CCAT GCCCGCGCT            CACGGCTGGCTGGTG  49 500
        miaB NONE
JH254_RS19045 NONE
        ybeY 4074373 .. 4074408 - -11.9  -2.62184   GTTGTGGCTATATGA    GGATGGGCATCGGCT GTTTCA AGACGATGACCATCC     GGTTCGTTACTCTTC  70 32
        corC 4073391 .. 4073412 -   -13  -5.47821   AGGGAGGCAAAAAAA           GCGCCCCT GACGAG AGGGGCGC            GGGATGTGCGTGGTG 100 51
         lnt 4071688 .. 4071707 -   -15  -3.64198   CTGCCATACAGAGAA            GAGGCGCC CATG GGCGCCTC             TTTTTATGTTCTTAA  90 46
        leuS 4068120 .. 4068142 - -11.9  -3.16676   TGCATTAAGGGAAGA           GCGGCGGGC GCAGG GCCCGCCGT           TATCATCCGTTTGCT  74 92
JH254_RS19015 NONE
JH254_RS19010 4067304 .. 4067343 - -12.3  -2.71731   GCTATGTCCCAATTA CGT-G-TTGCATGGGGCGC CCCA GCGCCTCATGCAAGCAACG  TGGTACATTCACTTC  70 120
       omp38 4062807 .. 4062836 - -10.7  -5.03145   GAAGGGGCCAAAAAA       CAGAACGGCCAAG CAAG CTTGGCCGTTCAT        CAACTAAATCAGCGC 100 51
JH254_RS18985 4061647 .. 4061665 -  -5.2  -4.86731   GGTTGGCAAACAAAA             GCGCCC GTCCAGG GAGCGC             TTCGTCAGCTCTTTA  80 85
JH254_RS18980 4060337 .. 4060355 - -17.4   -5.0925   CCGGAAAATGAAAAA             GCCCGCCG TGT CGGCGGGC             TTTTTATGGCTGAAG 100 69
JH254_RS18960 4055469 .. 4055481 - -10.5   -3.2794   TTGGAGCTACACCAA                GCGCC GCT GGCGC                GATGGCTACAACCCG  70 87
        msbA NONE
        lpxK NONE
JH254_RS18945 NONE
        kdsB 4051510 .. 4051527 - -14.1  -5.32565   GAATCAATTAAAAAA             CGGCGCC CTGG GGCGCCG              TATTGCATCAAAGCC 100 53
        uvrY 4050663 .. 4050678 - -11.8  -4.77757   CTGCAAAAAGCAAAA              GGCGGC CGGT GCCGCC               TTTGGTGTCCACACG 100 47
        uvrC NONE
        pgsA NONE
JH254_RS18920 4047687 .. 4047699 -  -7.7  -4.18197   ACGCGCCATGCAAAA                GAGAG GAA CTCTC                TATTGTCTGAATTTG  71 39
JH254_RS18915 4047581 .. 4047595 -    -7  -3.16742   CGCAATCGGTATCAA               GCTCGC GTG GCGGGC               TTGTCAATATGGAGG  54 34
JH254_RS18910 4047436 .. 4047455 - -12.2  -5.40464   GACTAGAAACAAAAA            GGCCACTA TTGC TAGTGGCC             TTAGTAAGTCTTTGA 100 47
JH254_RS18870 4039679 .. 4039698 -   -15  -5.38054   GGCTACAAACAAAAA            CCGCAGCC CAAG GGCTGCGG             TTTTTTTATAGGCTC 100 78
JH254_RS18860 4038380 .. 4038398 - -12.4  -5.24129   TGCTTCCAGAAAAAA             CCGCAGCC TTA AGCTGCGG             TTTTTATTTCTATTC 100 71
        recR 4036354 .. 4036397 - -16.8  -3.45571   CCTTTCAAATATCAA GGGGCTTGCGTGCAAACTTG AGAG CAAATTTGCACACCGGCCCC TCGCTTGGCCCACAC  93 452
        htpG 4034336 .. 4034356 - -12.6  -5.77853   AACGGCCAAAAAAAA            GCCCACTG TCATG CAGTGGGC            CAATCACAATCACAT 100 40
         adk 4033414 .. 4033430 -  -7.2  -4.25681   ATGGAATGCAAGAAA              GGGCCC GGTAT GGACCC              TTTTCTCACTCTCGT  74 83
        hemH NONE
JH254_RS18835 4031902 .. 4031920 -   -16  -5.24129   GCCTGCCACAAAAAA             CCACCCCG TGA CGGGGTGG             TGTTGCGGGATGACA 100 42
JH254_RS18830 4030406 .. 4030437 - -19.6  -4.60041   ATCCAGCCCCAAAAA      CAAGAAAGGGTGCC CAGT GGCACCCTTTCTCG       TGGTCGACAGGAAGA 100 45
JH254_RS18825 4028566 .. 4028582 -  -3.6  -3.51232   TCTCTTGCAAAGCAA              TGGCAG GCTGT CGGCCA              AGGCTGGCCGAGAAT  50 109
JH254_RS18820 4028127 .. 4028154 - -22.8  -4.37092   ATGGCGGCCATAAAA        GAACCGGCCCCC CGAA GGGGGCCGGTTC         ATCACAATCCGGCGG 100 51
JH254_RS18815 4027127 .. 4027144 - -10.5  -4.60487   CACCAGTTGCAAAAA             GACCCCG ACAT CGGGGCC              AACCTGGTGTTCGAG  95 420
        glgC 4024437 .. 4024453 - -13.7  -4.74132   ATACCCCATGAAAAA              GGGAGCC TTT GGCTCCC              TTTTTTTATCCTGCC 100 48
JH254_RS18790 NONE
JH254_RS18785 NONE
JH254_RS18780 NONE
        amoF NONE
        dhbA 4013409 .. 4013424 -    -9  -3.86346   GTACTGCTCGATAAA              CCAGAG CCCG CTCTGG               GACGAGGAGAGCGGC  71 270
JH254_RS18760 4007291 .. 4007312 - -15.9  -3.60525   TGCACGGATATAGAA           GAGGCGACC CAAG GGTCGCCTC            TTTTTCGTCATGGGC  91 54
JH254_RS18745 NONE
JH254_RS18740 4001698 .. 4001722 - -14.2  -4.18018   TCGCTCGACGGAAAA          CGGGCCCGGC GCGGT GCCGGGCCCC          TTTATCACAGGCCGA 100 30
JH254_RS18735 4000942 .. 4000960 -  -3.8  -3.03443   GGATGAGTACAGAGA             GTGTAACA TCC CGTTACGC             CATGTCAGCCAGGCG  44 58
JH254_RS18730 4000110 .. 4000125 -  -3.3  -3.62746   CGTACTGGAAAAAAT              CATGA TTGCTT TCATG               GAGATACCATAACCA  50 77
         rnk 3999491 .. 3999549 -  -8.3  -3.89346   CTCCGACCGGACAAA GACATACCG--AGTCAGCCAC-CTGGTC GCATCA GACCAGAGTGGCCGCCTGGCGGCCTGTC AGCGGTGCAGCTCCC  71 24
JH254_RS18715 NONE
JH254_RS18710 NONE
JH254_RS18705 3995142 .. 3995168 -   -21  -2.95106   AAGAAGGCAAGCATA         GAAGAGGGAGCC ATG GGCTCCCTCTTC         GTGTTGGTGCATCGC 100 44
JH254_RS18700 3994088 .. 3994105 - -12.7  -4.72272   CCCTGTCATGAAAAA             GAGCGCC CCTG GGCGCTC              TTTTTTTTTATCCTG 100 50
JH254_RS18650 3982408 .. 3982431 - -15.4  -5.47218   GTGCAGGCAAAAAAA          TAGCCCAGTC GTTT GACTGGGCTA           TTTTCGGGGAATTTG 100 39
JH254_RS18645 3981643 .. 3981654 -    -3  -3.34716   GGATGGGTTAAAAAT                GTAA CTAA TTAC                 GTAATAAAATTACAA  46 418
JH254_RS18640 NONE
        aceA 3978316 .. 3978342 - -13.8  -2.83747   TAAGCCCCATAACGA         CAAACCCCGG GACTTGG CCGGGGTTTG         TTTGCGAGCATTACA  76 47
JH254_RS18630 3976811 .. 3976838 -   -20  -3.65313   TAAGCACACCTTAAA        TAGCAGAGGGCC AAAA GGCCCTCTGCTA         TTGTTTTGGTTTTAG 100 70
JH254_RS18605 NONE
JH254_RS18600 3967783 .. 3967799 - -10.8  -5.72254   TTAAACAACAAAAAA              CCGGCC ACTAG GGCCGG              TTGTCGCTTTACGCT 100 46
JH254_RS18595 NONE
JH254_RS18590 3963495 .. 3963512 - -12.7  -5.06414   TCCCTGCAACAAAAA             CGGCTCC CGCG GGAGCCG              TTTTTTTATGGGATC 100 50
         glk 3959529 .. 3959545 - -10.8  -5.77988   ACAGACATAAAAAAA              CCGGCC GCGAG GGCCGG              TGAAACAGTTCAGGC 100 178
        rfbB 3955134 .. 3955148 -  -4.3  -3.12668   GATCTTGATATCCAA               CATCA GGATT TGATG               CTTGATATAAAAGTT  47 170
JH254_RS18555 3953382 .. 3953396 -  -6.4   -3.1315   ATAATAACTGCAATA               CCCATG GTG CATAGG               AAAAAGAGGGCCAAC  52 398
JH254_RS18550 3952372 .. 3952386 -  -2.2  -2.74755   CTAAATACTAAATAC               TAAAAT TTT ATCTTA               CAGCATCTAAAGGTA  39 10
JH254_RS18545 3951133 .. 3951147 -  -4.4  -3.21593   GATCTTGGCAGAATA               TTTTTA CTG TAAAAA               TCCTAATACACACTC  49 464
JH254_RS18535 3949563 .. 3949577 -  -2.9  -2.73356   AAAGACTATATATGA               GTATT ATTTA AATAC               AACCTGGCAGTCAAA  41 158
JH254_RS18530 NONE
JH254_RS18525 3947564 .. 3947578 -  -2.2  -2.91144   GGAGGCCTCAAAGTA               CTTTTA CAA TAAAAA               AACAGATAGATATCA  41 38
JH254_RS18520 3946266 .. 3946285 -  -3.5  -3.29142   CCCAGCAACAAGATA            CGCATCGG GATTA CCG-CGCG            CCAAAACCGGTCAGG  48 16
        rfbD 3945339 .. 3945351 -  -5.5  -3.08679   CTGGTGCATGGAACA                CCTCC AGA GGAGA                ACAGAGAGCCATCAA  50 54
        rfbA NONE
        rfbC 3943765 .. 3943776 -  -2.2  -3.07043   TTCATCACCGGAAGA                GGCT TGCC AACC                 CTGGGGCAACTGACT  42 67
JH254_RS18500 3942447 .. 3942460 -  -3.9  -3.30124   CTCCATGCGGGACAA               GAAAA TCTC TTTTC                TGGTCTGACGGCGCT  48 295
JH254_RS18475 3937522 .. 3937532 -  -8.2  -3.02166   CCTGCAAGGAAAGCA                 GCCG CAG CGGC                 CAGAAAAGAGAAAGA  58 66
JH254_RS18470 3933594 .. 3933612 -   -16  -5.60993   TCTTCTACAAAAAAA             CGGGAGGC CAG GCCTCCCG             TCAATATATGCACGC 100 136
JH254_RS18455 3932636 .. 3932664 -   -14  -3.93695   TTCACCATTCATAAA       GCAAAA-GGCGGG TCAT CCCGCCTTTTTGC        ATTCTACCGTGCCGT  95 40
JH254_RS18445 3929316 .. 3929335 - -10.7  -3.41878   CCCTTGAAGGCATAA            CCACCGC CAAAGT GCGGTGG             TGACATACCTTCATT  72 61
JH254_RS18440 3927337 .. 3927366 - -15.7  -2.76696   TTCTGGGGCAAGAAT       GGGAGGCAGCCGC GACA ACGACTGCCCCCC        GAACTCAATAGGCGT  82 30
JH254_RS18435 3925971 .. 3925990 -   -10  -6.22802   CCTGACAAAAAAAAA            CGGCCATC CAAT GATGACCG             TCGAAAGTAACGAAG 100 229
JH254_RS18430 3925030 .. 3925043 -  -9.5  -2.78596   GATGGCGGCATGATA               GGGGG CGAT CCCCC                CCTTGGCAAACCTCA  63 117
        yciA 3924544 .. 3924581 -  -5.6  -5.07567   TGATACGGCAAAAAA  CCGGGC-TTGA-GCAGGA AATA TCCATCATCAATGCCCGG   CTCATCTGAGCAGAC  84 41
JH254_RS18415 3923336 .. 3923356 - -12.6  -5.15969   TCGCAATCCAAAAAA            TACCCCGC TTGAT GCGGGGTA            TTTTTTTGTCTGCAT 100 78
JH254_RS18400 3920113 .. 3920143 -  -8.9  -3.06815   AGCTTGCCGAAGACA       GCGGCTACCAGCC CTGAT GCCCGCTAGCCGC       CCTGGCGCGCCATTC  63 18
        dnaQ NONE
JH254_RS18385 3917567 .. 3917589 - -19.2  -3.21218   ACTTGCGACCATGAA           GAAGCCGCCC ATT GGGCGGCTTC           TTTGCAATGTGCGCG  95 44
        lpcA NONE
JH254_RS18365 3911614 .. 3911635 - -14.5  -3.61398   GGCTGCTGCGAAGAA           CCAGGGTAG ACAT CTACCCTGG            TATTTTTTATTTCTG  86 32
JH254_RS18360 NONE
JH254_RS18350 NONE
JH254_RS18345 3906633 .. 3906654 - -13.1  -2.77013   TATTTGCTGAAGAAT           TGGTCAACC ACCA GGTTGACCA            TTTTTTTTACCCAAA  74 52
JH254_RS18255 3887161 .. 3887196 -  -7.7  -4.58685   AAACGGTGGGAAAAA    CGAGGCACCATCATGC AAGAG ACATGATGGTGC-TGG    GGGAGGACAAGCCCG  79 59
JH254_RS18245 3885599 .. 3885650 -   -18  -2.90075   TGCTGCCCAAGGACA CCGAGGCCGACGCCCGCTTCC-GCC TCA AGCTGGAAGAAGGCTCCAGCCTCGG TCTGCAACCCCTGCC  90 66
JH254_RS18235 NONE
JH254_RS18230 3883899 .. 3883914 - -11.8  -2.62184   CCCTCCCCCAGATGA              CCCCGC CCAG GCGGGG               TCATCTGCTATGAGC  70 71
        rpoE NONE
JH254_RS18215 NONE
JH254_RS18210 NONE
JH254_RS18205 3879251 .. 3879264 -  -5.2  -2.70946   GGGCCCCACAAATAG               CGCC TTGTCT GGCG                GGCGTTGGGCACCTG  46 66
        lepA NONE
        lepB NONE
         rnc 3875725 .. 3875735 -  -2.4   -2.9462   GATGGAGTGAAATGA                 GCGC ACA GTGC                 CGGATCCGTCATGGT  41 43
         era NONE
        recO 3874041 .. 3874068 -  -3.4  -3.73224   TTATTGTTCATGAAA        GGCGATGTCATA AACA CAAAACATCACC         AGATAATAAAAATCA  53 38
        pdxJ 3873134 .. 3873163 - -22.3  -4.09685   TTCCACTCCTGAAAA       CCACAAGGGACGC CGAA GCGTCCCTTGTGG        TTTTCATACCTGCGA 100 48
        rlmD 3867244 .. 3867261 -  -4.9  -3.82378   ATTCATCCAGAATAA             TGCAGTCG TCT CGACT-CA             GCCCCGTTCGAACAG  57 23
        relA 3864669 .. 3864689 -   -14  -2.80791   GAGGGAGAAAATGCA            GACCGGCC ACTGG GGCCGGTC            GGTTGAGCATTACAG  79 35
        mazG NONE
        pyrG 3861912 .. 3861938 - -11.5  -5.46629   AATATGCCAAAAAAA         GCGGCTGTGGC ACAGA GCCCCAACCGC         ATTTATTTTCAATTA 100 38
         eno 3860513 .. 3860532 - -16.4  -4.93365   GCGCAGAACGAAAAA            GCCCCGCC AGAT GGCGGGGC             TTTGTGAAGCATGAA 100 53
        ftsB NONE
        ispD 3859325 .. 3859346 -  -3.7  -4.25104   TCTGTCTCATCAAAA           CCATG-TCCG GTG CGGATCATGC           CTGCTCCTCTGGGGA  63 20
        ispF NONE
        truD NONE
        surE 3856986 .. 3857007 -  -2.9  -3.09327   TCAGTTGATTCAACA           GGCGCTGTA CTAT CACAACGTC            ATCCCTGCAGATCCA  43 24
JH254_RS18105 NONE
JH254_RS18100 NONE
JH254_RS18095 3854712 .. 3854725 -  -6.7  -3.22114   TACACCAGAGTAAGA               CTCAG CTCT CTGAG                TTAACGCTTTGGCAA  56 26
        rpoS 3853649 .. 3853663 - -12.8  -4.98911   CACGACAAAAAGAAA               GGGGCC TGC GGCCCC               TTTTTCATCTTGATG 100 58
        rpsU NONE
JH254_RS18075 3851700 .. 3851726 - -10.9  -5.69793   ATAGGAAATAAAAAA        GCCGCGCATTCC AATG GGAA-GCACGGC         TTCTTCGACCAAACA 100 54
JH254_RS18070 3849731 .. 3849755 -  -7.1   -4.6821   AATTCTAATAGAAAA          CCGCCAGACAT GCT ATGTCTGGTTG          CGGCGTCGGTCATGA  76 148
        rpoD 3847747 .. 3847763 - -15.1   -4.7878   CACGGATAAAACAAA              GCCCCGC ATG GCGGGGC              TTTTTGTTGCTATGT 100 61
JH254_RS18060 3847467 .. 3847491 - -11.4  -5.56673   ACGGACAACAAAAAA          CCCGCAAAGC CTTAC GCTGTGCGGG          TTTCTGTACTTTGTC 100 62
JH254_RS18040 3841646 .. 3841669 - -12.4  -4.08064   AAGCCCCTGCCAAAA          CCAAGGGGCC CGCA GGCCCCTTGT           TCTCTTATGCGACTG  87 30
JH254_RS18035 3840947 .. 3840977 - -21.3  -2.88663   ACTGACTCCCATAGA       CAAAGAGGGCGCC AGATG GGCGCCCTCTTTG       GTGTCCAGGCTGCAC 100 55
JH254_RS18025 3838907 .. 3838918 -  -7.2  -2.52543   ACGGGGCGTAATTTA                GGGG AAAG CCCC                 GCCGCCGTCAACGGC  53 95
JH254_RS18020 3838614 .. 3838645 - -23.2  -4.62069   CGGTTACCGGAAAAA      CAAAAGGCCCCGTC TTGC GACGGGGCCTTTTG       TTTTATTTGGCGGTG 100 33
JH254_RS18005 NONE
JH254_RS18000 3836737 .. 3836759 -  -3.3  -3.57144   TTGCGCATGGCGAAA           CTGAAGTCG GCGCA CGCCATCAG           CCCGAGTCGTTGAGC  50 22
JH254_RS17995 NONE
JH254_RS17990 3835375 .. 3835391 -  -2.9  -3.14132   GGTGCTCGGCACCAA              CGCGG GCAACTG CCACG              GGGTCTTTACCGCCG  44 436
        folD 3831576 .. 3831594 - -14.6   -5.8187   GACGCAATAAAAAAA             GGGAAGGC AAT GCCTTCCC             TTTCTCTTTTCTGCC 100 52
JH254_RS17945 3827212 .. 3827251 - -12.9  -3.83502   GAGGGCCACATTAAA CAGGGGTGTCGCGCCGACC GCAA GGCCGGCGC-AC-CGCCTG  GCTATTCATCCCGCC  85 45
JH254_RS17940 3825754 .. 3825771 -  -4.1  -4.63527   CCAGCACTTCAAAAA             CCGG-GAC ATC GTCGCCGA             GTGCCGCGACTTTCT  72 509
JH254_RS17925 3822535 .. 3822559 -  -9.9  -3.54424   GCCCATTCGTTGAAA          GGGCCCCGG GCGCGTG CCGGGGCGC          AAGGTCAGAATGCGT  72 30
JH254_RS17920 3821655 .. 3821673 - -11.6  -5.36441   GCCGGACACAAAAAA             GCCGCCAG GAT CAGGCGGC             TTTCACCACGGGTTG 100 65
        metE 3818204 .. 3818227 - -16.8  -5.08824   CGGCCATGCAAAAAA          GAGGGAAGGC TGTC GCCTTCCCTC           TCTCGTCTTGGTGAC 100 76
JH254_RS17900 3815730 .. 3815752 - -19.2  -5.01732   AAGTCTGCGAAAAAA           GAGGGCGTGC CTG GCACGCCCTC           TTTTTTCTTGCCCCC 100 45
JH254_RS17810 3792361 .. 3792371 -  -3.2  -3.30635   GAAATTTGGCCATAA                 CAAG CTC CCTG                 TCCCTGGAAATGTCA  46 230
JH254_RS17805 3791720 .. 3791732 -  -4.8  -2.87931   TTTAGCCTTCACAGA                TCCC GGTCA GGGA                TGGGTCTCGATGGGG  44 19
JH254_RS17800 3790793 .. 3790818 - -19.1   -3.9122   GATTTGCTGAAATAA         CAAAGGCGGCC AATT GGCCGCCTTTG          TTTTATGCCTCCGTC 100 56
JH254_RS17765 3778603 .. 3778623 -  -8.9  -4.26903   CCGACGGGATGAAAA            GCTGATGGC GGG GCCGCCAGC            CGGCCGGCCCCTGAG  79 49
JH254_RS17760 3777928 .. 3777938 -  -8.2  -3.19192   GTTTATTGAACTGAA                 GGGG GCG CCCC                 CGTCTGATCAGGCAA  60 33
        rpiA 3777056 .. 3777073 - -14.1  -4.10612   AGGGATAACCAGAAA             CGGCGCC ATGA GGCGCCG              TTGTCCATTTGGGGC 100 101
        serA 3775607 .. 3775625 - -12.4  -5.36441   TCCTGACATAAAAAA             GCCCGTCA TCA CGACGGGC             TTTTTGCTGCGCAGA 100 51
JH254_RS17740 3773816 .. 3773842 - -17.4  -3.99374   CGCCAGCAAGAATAA         GGGGCCAGTATC AGG AATACTGGCCCC         TTTGCTTTTATTCGC 100 166
JH254_RS17720 NONE
        tapW 3769463 .. 3769480 - -11.3   -4.2349   TGCCCATATGCAAAA             GGGAACC CGAG GGTTCCC              TTTTTCGTGGCCGCC  89 51
JH254_RS17695 3766180 .. 3766191 -  -3.6  -4.66609   CATTCTAGGGAAAAA                CCCC CGGT GAGG                 CAAGGCGCGGGATGG  69 45
JH254_RS17690 3765309 .. 3765332 - -15.2  -4.72272   TCTTTGTACTAAAAA          GGCCCCCGCC GTGA GGAGGGGGCC           TGAAGGACATCCGGG 100 93
JH254_RS17685 3764247 .. 3764257 -  -3.2  -2.62396   CAGGGGGTGAGATCA                 GACA TGC TGCC                 TCCGTTGTTCTTGCA  40 12
JH254_RS17680 NONE
JH254_RS17675 3762670 .. 3762682 -  -6.9  -2.52543   AGTGTTGCCAAGTCA                CGGCG TTT CGCCA                CCCGGCGCAGACGTT  50 96
JH254_RS17670 3761615 .. 3761639 - -13.6  -3.14132   GCGCTGCCCGATGAA         GGCGGCCAGCG GGCA CGCTG-CCGCC          CCTGACTGTCGCTGC  78 216
JH254_RS17665 3761170 .. 3761185 - -11.8  -3.34715   GATGCGGGTGAAATA              GGGGCG AAGC CGCCCC               CGGATGGCCTGCGCG  77 113
JH254_RS17650 NONE
JH254_RS17645 NONE
JH254_RS17640 3753697 .. 3753719 - -10.6  -3.95036   AAGTAGCGTAAACAA           GACACCGG TTTGAGG CCGGTGTC           AGGTGATAACTAGAT  79 108
JH254_RS17635 NONE
JH254_RS17630 3750640 .. 3750656 - -10.8  -4.66163   AGTGTCAGGGAAAAA              GGGGGC ACTGG GCCCCC              TCGCATCGACTTACT  93 36
JH254_RS17625 3749945 .. 3749955 -  -2.4  -2.63913   GATGACCTCACATTA                 GCTC TTT GTGC                 TGAAAACCGAATTCC  38 7
JH254_RS17620 3749282 .. 3749292 -  -2.4  -4.11216   TGCTCAGCGCGAAAA                 CCAG ATG CGGG                 TCTGATTGAGCGTCT  56 3
JH254_RS17615 3747948 .. 3747970 - -14.9  -2.93073   TGGTGGCAACAAGCA           GAGGGAGGC GTTAT GCCTCCCTC           GTTTTTTTGTCGTCA  82 63
JH254_RS17600 3744065 .. 3744094 -  -9.2  -4.07568   GGCCTGTTCGCAAAA       GGGGGCCCCG-GG CGTGC CCTCAGGGCCCAC       AAGGCGCTCGGTCGT  75 130
        gabT 3742547 .. 3742557 -  -3.2  -5.40072   TTTGGCGCAAAAAAA                 GAAC CGG GCTC                 CGATGAGCGGACGGT  84 146
JH254_RS17590 NONE
JH254_RS17585 3740937 .. 3740957 - -19.7  -3.59979   TGCCGCCATGTGAAA            CCGGCGCCC TGG GGGCGCCGG            TTTCGCTCAGGAGGC 100 32
JH254_RS17580 3739104 .. 3739128 - -20.1  -3.17392   GACGTCTGAATGCAA          GAAGGGGAGCC ATG GGCTCCCCTTC          TGTTTGGGCGTGTGT 100 47
JH254_RS17570 3737248 .. 3737268 - -18.3  -2.53263   CGGACGGGCAAGGCA            CCGGGGGCA TGA TGCCCCCGG            TTCGGATTTACTTGA  86 33
JH254_RS17565 3736557 .. 3736588 - -15.2  -3.86524   AGACCGGGGCAGAAA      CGACAACGCCGGCGC AGT GCGCAGGCGTTGT-G      ATCAGGGTCCGTCGG  95 104
JH254_RS17560 3735580 .. 3735596 - -15.1   -2.7419   AGAGCACGGCAAGCA              GGGCGGC CTG GCCGCCC              CGCCCTCAACCGAAC  81 31
JH254_RS17555 3732069 .. 3732086 - -11.3  -5.71712   CCCGATATAAAAAAA             CCGACAC CCTG GTGTCGG              TTTTTTTATGGGGCT 100 176
JH254_RS17545 3731049 .. 3731065 - -10.9  -2.62616   TCAGTTGGTAGAGCA              CGACCTT GCC AAGGTCG              GGGTCGCGAGTTCGA  62 251
JH254_RS17530 3727312 .. 3727324 -  -5.5  -2.83164   GCAGCCATCATCAGA                GCAAC GTG GCTGC                GAGTTGGAGACTCAT  47 37
JH254_RS17525 3725509 .. 3725553 - -15.3  -5.91981   AAAAGCTAAAAAAAA GAACATAGAAGGAAGCAGCC TTGGTG GGCCGCTTCCTTCT-TATTC AGTTGGTGAATTACC 100 20
JH254_RS17475 3711378 .. 3711400 -  -2.6  -4.62471   TGGAATGCCCAAAAA           CCGCAATGCA CCA TGCATAGAGA           TTAAAGTTCAAGCAA  65 473
JH254_RS17470 3710244 .. 3710278 -  -3.3  -3.91897   TGTCGGAGGCATAAA    CGTTCCC-GCCCGGCC TGAT GGCCGGGTAGGGGTCT     ATAACGGGAATATGA  56 61
JH254_RS17465 NONE
JH254_RS17460 3707859 .. 3707873 -  -8.6  -3.21994   GAAAAAGATCTAATA               GGTTGA TAT TCAACC               CTACAGGTCCTTCAT  62 434
JH254_RS17450 3707233 .. 3707251 -  -7.4  -4.96501   GGCCATAAAAAGAAA             GGGCATCA TGA CGATACCC             TGTGATGTTATATCT  86 33
JH254_RS17445 3706531 .. 3706543 -  -4.7  -3.05844   GGGCGCATGTTAACA                GCCGG TGC CAGGC                CGGGGAAGCCCGGAT  47 291
JH254_RS17440 3704375 .. 3704400 -  -5.3  -4.07568   GGCGCTGCTGGAAAA         TGCCCAGAAGC ACGC GGTGCCGGGCA          TGCTGACCGTGCGTC  64 452
JH254_RS17425 NONE
JH254_RS17420 3701725 .. 3701745 - -12.6  -5.89921   ACCAGAATAAAAAAA            GCCACCGT ATATA ACGGTGGC            AAAAGCACGGACTCC 100 59
JH254_RS17415 3700757 .. 3700781 - -14.4  -2.91264   TCCGCCATCTATATA          GCCCAACTGA TTTAT TCAGTTGGGC          TTTTTTGTGTCTTCG  80 87
JH254_RS17405 3699670 .. 3699689 - -16.4   -4.4261   GCCTGAACAGCAAAA            CGCCCCGG CATG CCGGGGCG             TTTTTTCATGAACAA 100 49
        pheA 3680345 .. 3680374 - -20.9   -3.0094   CGCCAGGCACAGACA       CAGAAGGCGAACC CCAG GGTTCGCCTTCTG        CTTATCTTGCTGGTC 100 62
JH254_RS17285 3677714 .. 3677728 -  -2.8  -3.54475   GCGGGCATTATACAA               GAAGCA TTG TGCTTT               TAAACCCTTGATTCC  50 40
JH254_RS17280 3677574 .. 3677609 - -20.6  -2.93252   AGGGGCCAAGAACGA    CCAAGGGGTTGGCATC TTGC GATGCCAACCCCTTGT     TTTGTATGGCGTTCC 100 32
        ppk2 3676525 .. 3676543 -  -3.7  -3.28712   CCCGCTTGCCTAGAA             GCGCTCC GGAAT GATGCGC             AGCGGGTGTTCCGAG  48 1
JH254_RS17265 NONE
JH254_RS17260 3673050 .. 3673060 -  -4.6  -2.78384   GCCGCCTCTATCACA                 CCGG GGG CCAG                 GTCATTCGCGAGAAC  44 424
JH254_RS17250 NONE
JH254_RS17245 NONE
JH254_RS17240 NONE
JH254_RS17235 NONE
JH254_RS17230 NONE
JH254_RS17225 3666275 .. 3666301 -   -21  -4.93547   TGAATGAACGAAAAA         GAGGGCCAGTCT AGC AGACTGGCCCTC         GTCACACAGCGTTGC 100 55
JH254_RS17220 NONE
JH254_RS17215 3663323 .. 3663351 - -12.3  -3.54741   GAGTATGGGGGGAAA        CGCAGGCCCGACA AGG CGCCGGGCCCGGG        ATCAGGCCTGGCTCA  79 27
JH254_RS17210 3661270 .. 3661296 - -15.2  -4.72272   TGGTGCCACCAAAAA         CAAAACCGGGCC AGA GGCCCGGTTTTC         GGTCACGTCAGATGC 100 45
JH254_RS17205 3660349 .. 3660364 -  -7.5  -2.75074   TGCATGTCAAGAGGA              GGGCC GCCGAG GGCCC               CTTTTATCAGGCGGA  54 32
JH254_RS17195 3658897 .. 3658909 -  -4.8  -3.02947   CAGGCATGATAGATA                CCTC TTCAG GAGG                GAGGGGATGATCTCG  46 136
JH254_RS17190 3658586 .. 3658605 -  -2.8  -2.78384   TTCGTCGTTATGAGA            CACGGCAGG CTC CCCGC-ATG            AAAATGAGGGAGCCA  41 124
        smrA NONE
JH254_RS17180 3656032 .. 3656045 -  -6.7  -4.78839   AACCGGATAACAAAA               CGGTA CCCC TACCG                TGTTATCCGGAGTCA  79 402
JH254_RS17175 NONE
JH254_RS17170 NONE
JH254_RS17165 NONE
JH254_RS17160 NONE
JH254_RS17155 NONE
JH254_RS17150 3648870 .. 3648880 -  -2.4  -4.00042   GTGGCGATCAAACAA                 GGTG GTG CTCC                 TCTTCTGGGATGGCT  54 7
JH254_RS17145 3648219 .. 3648255 -  -3.4  -2.79831   GTCATGGTAAAACAT    TGGCGTGCAGGCGCAA GTGCT CCGTGCCGGCGCGCCC    CCGGGATCCCGTCAG  41 37
        mltB 3647037 .. 3647052 - -11.8   -5.9003   AAACGAATAAAAAAA              CGGGCC TGCG GGCCCG               TTTTCGTTGGCATTG 100 49
JH254_RS17130 3645526 .. 3645546 - -12.6  -3.62418   ACAACCCATGTGAAA            GAGGAGCC CTGGT GGCTCCTC            TTTTTTTGTGTCGGG  81 52
JH254_RS17115 3642215 .. 3642225 -    -4  -2.66316   GGGCGCACTATATCA                 CAAA GGA TTTG                 AAACTGTTAACCGCC  42 32
JH254_RS17110 NONE
        ybfE NONE
        fldA 3641024 .. 3641046 - -19.2  -3.12351   CTGCTGCAGATGCAA           CAAGGGCCCC GTC GGGGCCCTTG           TTGCATGAAGAGGGA  95 52
         fur 3639828 .. 3639844 - -12.3  -5.36441   TGCGGACACAAAAAA              GCCAGCA TCA TGCTGGC              TTTTTTATTGCGCTG 100 52
        nagB NONE
        nagA NONE
JH254_RS17060 3630038 .. 3630056 -   -16  -5.69473   CAGACCATAAAAAAA             CGGCAGCC ACT GGCTGCCG             TTTTCGTATCCGAAG 100 49
JH254_RS17040 3623556 .. 3623566 -  -4.6  -4.07568   GGGGGCCGCTCAAAA                 GGGC AGC ACCC                 CCTGGCGGGCGCGAT  61 9
        cmoA NONE
        cmoB NONE
JH254_RS17025 NONE
JH254_RS17020 NONE
JH254_RS17015 3618108 .. 3618123 - -11.8  -5.60993   GCGGCCATAAAAAAA              CGCGCC GGTG GGCGCG               TTTTTGCAGAAGGGG 100 48
JH254_RS17010 3616893 .. 3616940 -  -5.6  -3.52539   GAACCTGAATGACAA CGGCATTGA-CGAGTGGCCGCC TGTGGG GGCAGCCACTGGATC-ACCCCG CCGGTTTGGGGGTAA  54 18
JH254_RS17005 3616331 .. 3616366 - -23.6  -3.33492   GCACTGACCCGACAA    CAACATGAAAAGGCCC CTCG GGGCCTTTTCATGTTG     GGGGTCGCACCTACT 100 36
JH254_RS16995 NONE
JH254_RS16990 NONE
JH254_RS16985 NONE
JH254_RS16980 3611733 .. 3611745 -  -4.7  -2.68015   CTCAAGGAGCAGAAC                CCGGC GGT GGCGG                TGATCGGCCTGCAAC  43 349
JH254_RS16970 NONE
JH254_RS16965 NONE
JH254_RS16960 3608217 .. 3608236 -  -3.4  -3.06183   TGGAGGGGCATTTAA            CACCAAGC GGGG GCGGGGTG             CAATCCTGGTCGCAG  43 72
JH254_RS16955 NONE
JH254_RS16950 3606116 .. 3606132 - -12.3  -3.86202   GGGCAGCAGAGGAAA              GAAGCGG GAT CCGCTTC              ACATTCGGGAGAGGG  83 105
JH254_RS16945 3605661 .. 3605679 - -13.1  -5.06816   AGCGGCCAACAAAAA             GCCCGGC GTCGG GCCGGGC             TGGCAGGATAAGTTG 100 66
JH254_RS16930 3603914 .. 3603925 -  -3.6  -3.06796   CGTTATCTTAGCCAA                GACG CTAC CGCC                 GTCCAGCACTCAAAC  46 102
JH254_RS16925 3603174 .. 3603187 -  -9.5  -5.60993   GGCGCCATAAAAAAA               GGCGC TGCA GCGCC                TCTTGATTGAGCCAG 100 50
JH254_RS16920 3599105 .. 3599139 - -23.8  -3.87815   CGGCACCGCCACAAA     CGACAAGGGGAGCATC ACG GATGCTCCCCTTGTCA     CATCGGGCAACAGCC 100 49
JH254_RS16910 3597429 .. 3597440 -  -5.8  -4.56153   TCAGCAGAAAAACAA                GGCA TCCA TGCC                 CGGCTGATCAACCAC  75 33
        astE 3596049 .. 3596068 - -10.7  -4.39652   AGCAGAAACAAAGAA            GGGAGCC TGTTCT GGCTCCC             TGTCATATCGAGTTC  88 116
        pdhA NONE
JH254_RS16895 3593770 .. 3593786 -  -4.4  -2.73275   CATTGACAGACACCA             TGGAGCC CTGT GGC-CCA              GGCACTTGCGCATCC  44 55
JH254_RS16890 3592589 .. 3592617 -  -8.7  -4.47183   GATTACGCAAACAAA        TTTGTACCCCGCC AGC GGCGGGGTACGGC        GGTTTAGACCTGTGC  81 29
JH254_RS16885 3592160 .. 3592184 - -17.9  -5.50723   CCATGAAAACAAAAA          GCCGTGGCACC AGA GGTACCACGGC          TTTCTTAAATTCTGC 100 46
JH254_RS16880 3591356 .. 3591378 -  -9.8  -3.38812   GCGCCTTGAACAAGA           TGACCTGGCA TCA CGCCTGGTCA           TGAGGGTGAACGAGG  70 464
JH254_RS16870 3590717 .. 3590743 -  -2.8  -4.15044   CTCTCGTTCAATAAA         GGGCGACATGTT CAC ATCTTGCCGACC         CCTTGTCCAGCAGGA  58 69
JH254_RS16865 3590242 .. 3590263 -   -13  -5.07652   GGCCCCAAAACAAAA           GACCCCGC ACATTG GCGGGGTC            TTTGTTACAACCGGG 100 62
JH254_RS16850 3586495 .. 3586548 -  -6.5  -2.82015   TCCACAGCCACGACA TCCTGGCCGCCACCGCCGGCATCAC CCCC ATCATGCTGGAGGTGGCCGCCAACC ATCACGAGCGGATCG  49 477
        rsuA 3584882 .. 3584912 - -12.5  -2.52082   AGGAAGGACCAACAC       GCCCATCGGCGGC ACTGA GCCGCCGATGCTC       ACCCTTGCCGGACAG  72 61
JH254_RS16830 NONE
        yfcE 3581045 .. 3581076 -    -8  -3.44051   CGCTCAGGACGACAA      CCTCTCCCAG-ATGC AAG GCTTGCTGGCAGAGG      AGTTTGACCTGCTCA  60 413
JH254_RS16805 NONE
JH254_RS16800 3577939 .. 3577972 -  -8.9  -2.64107   GAAATTGCCATAGCA     CACCTCCTGCTTCAT GAAT ATTTAGCAAGAGGTG      TGCCAAGAGGGTATT  59 49
        flgB NONE
        flgC NONE
JH254_RS16785 NONE
        flgE 3574896 .. 3574913 - -14.1  -3.61609   GGACGGAAATGACAA             GGGGCGC CGAA GCGCCCC              TGCCAACTACCCGCC  86 44
        flgF NONE
        flgG NONE
        flgH 3572554 .. 3572568 -  -2.7  -2.74144   TCTTGAGTCTTAAAT               GGGCC ACCAG GGGCC               GTTGAAGAAGCTGGT  41 5
JH254_RS16760 3571401 .. 3571414 -  -3.8  -2.93149   GAAATTACAGAATGA               CCAG TTGGCC CTGG                ATCGCGCCCGCCTGC  44 1
        flgJ NONE
        flgK NONE
        flgL 3566979 .. 3567014 - -25.6  -3.72576   GGGCCTTTCATGAAA    CG-AGGCTCCCCCGTGC GTG GCACGGGGGAGCCTGCG    GTCAACGGATGAACG 100 41
        mgtE 3565178 .. 3565194 - -13.7  -4.56597   CCCTCTGTGCAAAAA              GGCAGCC GAT GGCTGCC              TTTTTTGTCTCTTGT  95 47
JH254_RS16720 3559888 .. 3559911 - -11.8  -3.96618   GCGAAGGGGAAAGAA          TGACGCCG-AC AGG GTGCGGCGTCA          GAGGAGGGATCAGTG  85 35
JH254_RS16715 3558161 .. 3558189 -  -6.8  -3.89501   CAAGATTGTCATAAA       GCTGACCTCAAAC TGGC GATTGA-GTCAGC        TTATTCAATTTCCAT  66 99
JH254_RS16710 NONE
JH254_RS16705 3555686 .. 3555696 -  -8.2  -2.61548   GCCCATGATAATCGA                 GCCG GAC CGGC                 AAGGCCATGCGCTTG  56 47
JH254_RS16700 3554758 .. 3554781 - -16.8  -3.71124   AGCAGTAAGACACAA          CAAGGGAGGC TTAG GCCTCCCTTG           TCATTTCCATCGACC 100 93
         upp 3552164 .. 3552188 - -21.5  -2.71125   AGGGGGGAGAAACAG          CGGAGCCGGCA GGG TGCCGGCTCCG          TTTGCGCGCCTTGGG 100 60
JH254_RS16680 3551013 .. 3551034 - -14.4  -3.64198   GGGGCAGATAGAGAA           CCGCCCGG ACCATG CCGGGCGG            TCAGGATCCTTCCCC  86 45
         hda 3550166 .. 3550189 -    -8  -4.28375   GCAATACATTCAAAA          CCAGCGGGGC TGAC GCCCCGGCGA           AATTCCCCTCCCACC  77 86
JH254_RS16655 NONE
JH254_RS16650 3546504 .. 3546525 - -15.9  -5.52384   TCGGCATGAAAAAAA           GAGGCCTGC AGAT GCAGGCCTC            TTTTCTATCAGGTGG 100 54
JH254_RS16640 3544450 .. 3544466 -  -7.9  -4.08706   GCTGCAGGAGATAAA              GCGGGGT GAC ACCCTGC              CCGATCGGCTCAACC  71 272
JH254_RS16630 3542567 .. 3542586 - -11.4  -3.61715   CAGCCTGCGCAAGAA            GCTGGGAG ATAA CCCCCAGC             AACCCACGCTGATCG  73 178
JH254_RS16590 3529703 .. 3529732 - -20.9  -3.00298   TGCGTTAATCACACA       TGAAGCCGGTCTG TGAT CAGACCGGCTTCA        ATCACTGTGTTGCAA 100 44
JH254_RS16560 3521035 .. 3521051 -  -7.9  -3.01712   TTTCGTTCTTCAACA              CGCCCGT TTA ACCGGCG              CACTTTTGATGGTGC  56 35
JH254_RS16555 NONE
JH254_RS16550 3520793 .. 3520810 -  -9.9  -4.55887   TTCTAAAAACACAAA             GATGACC ATCT GGTCATC              CTCGTCATACAGCAA  87 44
JH254_RS16545 3520668 .. 3520683 - -11.8  -5.18355   GCCAAAAAGCAAAAA              CCCCGC CTGA GCGGGG               TTTTCAAATGTGGTC 100 36
JH254_RS16540 3519963 .. 3519983 -   -14  -4.65895   TCGCGGATCGAAAAA            GGGTGGCC CATGT GGCCACCC            TTTTTGTTTCTCGCT 100 47
JH254_RS16495 3510753 .. 3510785 - -13.4  -2.59971   CTCAATAAGTAACAT      TGGCACTGGCGCCG AGCAA CCGCGCCAGCACCA      CTTCCTCACCCCTCC  75 171
JH254_RS16490 3509762 .. 3509781 - -10.6   -2.8978   AGGCTGACAGGAAAC            GGGCCCGC CCAG GCTGGCCC             TCTTTGGTTCCACAG  67 73
JH254_RS16480 3508092 .. 3508107 -  -2.4  -2.62616   CCAGTGGGCACAGCA              GCGCCG CCAA CAGCGG               GAGGCTGCCCTATGT  38 304
JH254_RS16465 3505696 .. 3505722 -  -4.3  -3.53091   ACTCTGGTTGGCAAA         GAGGTGCTGAC CGAGT GCCAGCCCATC         CTGAGCGACACCGGC  51 472
JH254_RS16450 3502819 .. 3502829 -  -8.2  -3.62275   ATGTATCAGGCGAAA                 CGCC AGG GGCG                 CAACCAGACCGTGCT  65 107
        ftnA 3500318 .. 3500338 - -16.9  -4.78848   CCTGCAAATAGAAAA            CGGCCCCTT TAC AAGGGGCCG            TCATTGTACTGACTG 100 62
JH254_RS16435 3498838 .. 3498857 -   -15  -5.31877   ACCGACCATAAAAAA            CGCGGCCT GAGC AGGCCGCG             TCTGGTTCCATCACT 100 196
        leuE 3496221 .. 3496244 - -10.2  -3.26722   GCCAGAGGCAGAACA          CTGCCCACCG TCCC CGGTGAGCTG           CTGTTTGCCCCCAGG  66 513
JH254_RS16405 3493672 .. 3493682 -  -5.4  -3.53811   TGTACTGTCTCTAAA                 CTTG AAT CAAG                 GCAATCTGTGTGAAC  54 67
JH254_RS16400 NONE
JH254_RS16395 3493418 .. 3493468 -  -9.9  -3.59627   AGCAAACTTCGTAAA GAAGTCAAAGGCATACATTGAAC GACAT GTTCAACTCATGGCTTTGTCTTC TGACAAATACAGTAC  72 45
JH254_RS16390 NONE
         rrf 3490134 .. 3490154 -  -5.4  -3.62032   ACACTAACCGGTAAA            GACCACGC TCAAT GCGTAATC            TAAAATTGGGTGCCT  56 37
JH254_RS16380 3490013 .. 3490030 - -12.7   -5.4251   GGCAGATACAAAAAA             GCCTCCC GATT GGGAGGC              TTTCTTATTTAATGG 100 38
JH254_RS16370 3487422 .. 3487458 -  -2.8  -2.64375   AAAATCTCGACAGCA   GGGGACAGCCGGG-CAA TTAA TCGACCCGGCAAGACCC    TAGCGGCGAAAGTCT  40 25
        crcB NONE
        ubiE NONE
JH254_RS16355 NONE
        ubiB NONE
        tatA 3483613 .. 3483628 -  -2.6  -4.58663   ACCAGTTCCCAAAAA              CCGATGT CGA ACAT-GG              CTTAGGCCTGATCTT  65 27
        tatB NONE
        tatC 3482406 .. 3482433 -   -12  -4.28548   ACGGATGCATGAAAA        GAGGAAGGGAGC CTCA GCTCCCCTCTTC         CGTTTGTTGCTGCTC  90 11
JH254_RS16330 NONE
        hemB 3480450 .. 3480475 - -19.1  -2.71447   ATCTACCAGAGACGA         CAATGCCGGCC CGAG GGCCGGCATTG          TGAGGGCATGGACAC  91 49
        prlC 3478104 .. 3478119 - -10.4  -4.58685   AAAGGCTTGGAAAAA              GGGACC AAAA GGTCCC               TTTTTCTATCAAAAA  93 141
JH254_RS16315 3475435 .. 3475452 -  -3.4  -2.68719   GCATGATAGCAGAAG             CGG-GAG ATCAG CTCACCG             TGGTCAGGTTCATCC  40 15
JH254_RS16310 3474567 .. 3474597 - -21.2  -2.77895   CCGAGTGCGAACAAC       GAAAGAGGGCCCGC AGC GCGGGCCCTCTTGC       TATCTGACACCTTGA 100 57
        trxA 3469821 .. 3469845 - -15.1  -4.02581   GGTGATAAAACACAA          GGAGCGCATTA TTG CAATGCGCTCC          TTCTTGATTATTACA  95 36
         rho 3468345 .. 3468362 - -10.5   -5.4433   ATAGATAAACAAAAA             CCGCGAC CTGG GCCGCGG              TTTTGTCATTGAAGA 100 46
JH254_RS16275 3467243 .. 3467253 -  -4.6  -2.75382   TATTTCATGCAAGTA                 CCCC AGC GGGA                 TCAGGTGGTCCCGCA  44 41
        ubiD 3465703 .. 3465759 -  -8.6  -2.78384   GGTCCGTCGAGCATA CCCAATTCGGCACGGCAATACCG-CAC TTTT GCGTCACAATGGCCGCGCCGCATCGGG GATCCCTCAGTCGAG  57 32
         fre 3464803 .. 3464819 - -13.7  -4.04318   CGTAGATAGCACAAA              CCCCAGC CAG GCTGGGG              TTTGTCGTTTTTATG  95 118
JH254_RS16255 3461757 .. 3461776 - -16.4  -5.67063   TTTATCATAAAAAAA            CGCCGCCC CAAG GGGCGGCG             TTTTTATTGGTCGGC 100 45
JH254_RS16240 3459428 .. 3459456 -   -11  -2.94099   CCGGGCCAGTACAGA       GCGCAGCTCGCCC CTCA GGACGAGC-GCAC        CAGATAGGCGGCGCT  70 11
JH254_RS16205 3452094 .. 3452125 - -17.4  -4.57837   ATAGGGGCCCAAAAA      CAGAAACCCCCTCG CTGG CGAGGGGGTTTCTT       GTTCATGGCACCCGT 100 48
        norV NONE
        norW NONE
JH254_RS16185 3447253 .. 3447266 -  -2.4  -3.47322   GGGCAGGATAACCAA               CATC TGAGTT GATG                ATTTTGATCTGCATG  46 88
JH254_RS16180 3445845 .. 3445858 -  -3.8  -2.90309   CGCCAAATAACAGCA               CCCA TTATGG TGGG                GAGCGCTATATGATC  44 156
        tnaC 3445685 .. 3445723 -  -4.3  -2.56914   CAGTTCAGGAATGGA   GGCGGGCTCGTGGCATG GCAGG CATGCCGCGCCGCCGCG   GGGAATTACAGCGGG  43 31
        tnaA 3444029 .. 3444050 - -14.5  -5.75945   AGCTGTGAAAAAAAA           GGGCACAGA AAAA TCTGTGCCC            CTGACTCGTTATGCT 100 34
JH254_RS16165 3442715 .. 3442763 - -14.1  -4.42464   AATGGGGGAAACAAA CTGGATCCTGCGCCCCGTCCAGAC ATGT GT-TGGACGGGGC-CAGGTT-CAG ACCACTCGGGTCATC 100 36
JH254_RS16160 3441297 .. 3441319 - -14.2  -3.44146   CTGTGTGACAAGCAA           GAAGGAGCCC ATG AGGCTCCTTC           TTTGTCATTGTGTGC  85 65
JH254_RS16150 NONE
        tnpA 3434406 .. 3434416 -  -2.4  -3.71917   ATCTTAAATGCGAAA                 GGGG ACT CCCT                 CCGACGTAGGTGGGA  51 60
JH254_RS16110 3433149 .. 3433164 -  -4.6   -4.9218   CAGTCACCAGAAAAA              TGTGCG TTTG CGCACG               TGTTCTGTCATCGAA  78 56
JH254_RS16105 NONE
JH254_RS16100 3432282 .. 3432303 -  -5.9  -3.28712   CGCGGTCTGTGACAA           CAAGATGTA TCCA TACCTCTTG            CGAACATCAACGGAC  54 111
JH254_RS16095 3431988 .. 3432017 - -20.9  -3.58343   CCCAGTATCCTGAAA       CAACAACGCAGCC CTCG GGCTGCGTTGTTG        TTTTTGCGCAGGCAT 100 56
JH254_RS16085 3430229 .. 3430249 - -13.3  -5.52384   GGGTGAGCAAAAAAA            GAGGCACGC ATG GCGTACCTC            AGGAAGTGGGTGGGT 100 24
        purT 3428926 .. 3428943 - -12.7  -3.66178   TGCTTCAATGGGAAA             GGGGCAG TCAC CTGCCCC              TTGCGCCGGATTACG  81 78
        hxpB 3428177 .. 3428198 -  -2.2  -2.92653   ATGAGCGGGATAAAG           GGAGG-CTG GAGGT CAGTCCGCC           AGGGTGTTGCCTACT  41 36
JH254_RS16070 3427816 .. 3427842 -   -21   -3.4178   ACGATGGCACCAGAA         CAAACGGGACCC ACA GGGTCCCGTTTG         TTTTTGTCTGTGTCT 100 52
JH254_RS16055 3426407 .. 3426429 -  -8.4  -4.59773   TTCTAGCCTGAAAAA           CCGCCAAC GGGGAAG GTCGGCGG           CAGATTTGTAGCCGG  82 43
JH254_RS16050 3424732 .. 3424748 -  -6.5   -3.9009   AACCCACTTCATAAA              CCGGGTT GAA AACCCGT              TTTATCCCGCCAGCA  66 193
JH254_RS16045 NONE
JH254_RS16040 NONE
JH254_RS16035 3424371 .. 3424392 -  -5.1  -3.35813   CCGGATTCGAACCAA           CGACATTGC CTAC GCCATGTCA            AAGTACTGTTCTAAC  52 96
JH254_RS16030 3424223 .. 3424233 -  -6.8  -2.75382   CAGCTGAGCTAAGGA                 CGCA GGG TGCG                 CAAGGCGACTTTGTG  51 57
JH254_RS16025 3424119 .. 3424136 - -12.7   -4.7629   CGACCAATGCAAAAA             GCCCGCT ATCA AGCGGGC              TTTTCTCAAATCTGG 100 38
JH254_RS16015 3420451 .. 3420467 - -13.7   -3.8186   CATTCCAATCAACAA              GAGCGCC ATG GGCGCTC              TTTTGTTTTGGAACC  88 46
JH254_RS15990 3415104 .. 3415126 - -19.2  -2.71364   GCATCGGCTGAACGA           CAAGGGCGCC AAT GGCGCCCTTG           TCGTATCCGAAGGGG  91 44
JH254_RS15955 3406471 .. 3406484 -  -3.1  -3.14132   TCTTCGTCGCATCAA               GAAAG AGAG CTTCC                ACTGGTACAGCCAGG  44 165
JH254_RS15945 NONE
JH254_RS15940 3402327 .. 3402349 -  -7.7  -3.53091   ACGGTGTCCGGCAAA          GC-CTGGGCC GATC AGCCCAGAGC           CACCACCACGCAGTT  61 14
JH254_RS15925 3397717 .. 3397765 -  -5.2  -4.11281   CATGACAACCACAAA CCCACGGCCGCCATCTGCCACG GCCCCAT CGC-GCTGCTGGCGGC-GCAGG CGGATCCGGCCGGGT  65 408
JH254_RS15915 3396161 .. 3396175 -  -5.6  -3.08679   CCTCGTCAGCGAAGA               GGGGGA CAT TCCCCT               GGCACAGGCGACCCC  50 1
JH254_RS15910 3394844 .. 3394879 - -18.5  -2.87132   TGGCTCTCCGATATA    GCGCGCCATACAAGT TCAATC ACTTATATGGCGCGC     TATGTGACAGTCTGG  93 54
JH254_RS15905 NONE
JH254_RS15900 3392301 .. 3392315 -  -5.6  -2.60496   GTTGCGTTTAAACAT               GGCGAG TCC CTCGCT               GGAAGAGGTGGTTGA  46 3
        yjfF 3390867 .. 3390898 - -12.3  -3.40403   TGGGGCCTACGACAA      GCGCTGGGAGC-TG GTGCA CATGCTCCCGGCGC      AGACGGCGCAGGCGT  74 420
JH254_RS15865 3385372 .. 3385395 -  -8.2  -3.49232   TTTCGAAAGAGAAGA          GCTT-GCCGTA CGC CACGGCCAAGC          GCTGGAAAGCGTCAG  64 121
JH254_RS15860 3383970 .. 3383992 -  -3.3  -4.17491   ATTAAATTCTTAAAA           GGCTATCTG TTTAT CAGGTGGCC           TTTTTCTTTTATGGC  58 252
JH254_RS15805 3375668 .. 3375697 -    -5  -3.55071   CGACATCCTGTCAAA       CCGAAGA-CGGGT CTTGC ACCCTCTCTCCGG       CCAATCCTGATTGCC  56 248
JH254_RS15800 NONE
JH254_RS15795 NONE
        hemN 3372695 .. 3372708 -  -9.5  -5.52096   AAACCCAATAAAAAA               CCGCC GAAA GGCGG                TTTTTTATTGTCCAA 100 55
        typA 3364579 .. 3364594 - -10.4    -5.626   GAGCCCATAAAAAAA              GAGGCC TTAA GGCCTC               TCTTTGGTCTGTCGA 100 55
JH254_RS15755 3363466 .. 3363506 -   -17  -4.07568   CCTCTCCTCTCAAAA CAGC-ACGACCGCCCATCC TGCG GGATGAGCGGTCGTCGATG  CTACCAATAAATGCC 100 93
         dtd 3362949 .. 3362965 -  -5.1  -3.63515   CGGCAGGGTGAAGAA              CCTGC GAAGTGT GCAGG              CATCGCGTCCTGCCC  56 70
JH254_RS15740 3361140 .. 3361162 - -13.5  -3.53444   CCGCCCAATAACGAA           CAAGGCCTC GCGAA GAGGCCTTG           TTGCTGTGAACATCA  82 45
JH254_RS15715 3352999 .. 3353026 -  -4.6  -2.91681   CTCCAACTCTATATA        CGGGCGCGGTCG GCTG CAGCCGGGCGCG         CGACATGGCTCATTG  46 35
JH254_RS15710 NONE
JH254_RS15705 3350478 .. 3350505 -  -9.8  -4.56597   CCGGGGGCGGAAAAA        CAGCAGGCCACC CGGG GGTGGCCTGTTT         AATTTTTCTAAACGA  87 48
JH254_RS15700 3349662 .. 3349673 -  -7.2  -2.89742   GGCAACCCGCAGACA                CCGC CATG GCGG                 GCAGGAAGGCAGACG  56 49
JH254_RS15685 3347308 .. 3347324 -  -4.3  -4.85599   TTCACCTGACAAAAA              GTCTGCA TCG CGCAGGC              TTTTTGCTTGGCAGG  78 96
JH254_RS15670 NONE
        secB NONE
        gpsA 3341888 .. 3341919 - -18.8  -3.53012   CCCCCTTGCGGCAAA      GAAAAGGCCCCGCC AGTT GGCGGGGCCTTTTG       CATGCTGCGGCTGGC 100 47
        bioH NONE
JH254_RS15640 NONE
JH254_RS15635 3338502 .. 3338515 -  -9.5   -5.1925   CCAGAATGCAAAAAA               GCCCC GAAA GGGGC                TTTTTCATGCCTGCA 100 51
        ompR NONE
        envZ 3333178 .. 3333199 - -14.5  -4.12532   CCCCTGACAGACAAA           GGGCGTATC CCTC GATACGCCC            TGCTTTCAATCCATC 100 31
        rpsJ 3331592 .. 3331607 -  -2.5  -3.33696   TCTTTCCGTAATTAA              CCCAG GCTGAT CTGGA               CGTCTACACCAGCTG  44 6
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ 3326891 .. 3326917 - -18.1  -5.05782   AGGTAGCCTAAAAAA         CAAACGGCCCC GATGG GGGGCCGTTTG         GGCTAAAAAGTACCG 100 43
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN 3325229 .. 3325243 -  -7.1  -3.14229   AGATTCTTACCAAGA               GGCCT TTTTG AGGCC               CGGAATTTCGCCCTT  54 2
        rpsH NONE
        rplF NONE
        rplR 3323904 .. 3323914 -  -3.2  -3.32963   ACTCCTAGCTTAGAA                 CTGA AGA CCAG                 CGTCACGAGCAGCGG  46 9
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ 3321222 .. 3321249 - -13.6  -4.90002   CAATACACAACAAAA        GTTG-GCTGGCTA TAT TAGCCAGCACAAC        TATTTGTTGCAAGTA 100 55
        rpsM NONE
        rpsK 3320367 .. 3320394 -  -2.6  -3.28261   ACAATCCTAGACCAA        GTAGCTACAGCGT TAC ACGCGGC-GCTTC        TTGGGAGGACGACAA  44 10
        rpsD 3319716 .. 3319734 - -10.4  -2.59431   TCTCTTTAGAAGCTA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGCTGT  64 10
        rpoA NONE
        rplQ 3318249 .. 3318265 - -10.8  -5.13722   TCCACCAAAAGAAAA              GCCGGG ACAAG CCCGGC              TTTTTCTTTTATCAC 100 37
        yjbD 3303223 .. 3303238 -  -6.8  -3.72141   ATAGTGATATTGAAA              CGCCAC CGGT GTGGCA               ATCCATGATTTTTCG  63 372
JH254_RS15360 3302910 .. 3302923 -  -9.5   -5.4505   GCGGGCAACAAAAAA               CCCGC CGAA GCGGG                TTTTTTCAATTCTTG 100 83
JH254_RS15345 3300041 .. 3300062 - -17.3  -4.99134   AGCGGAAACGAAAAA           CGGGGTGGC CAAG GCCACCCCG            TCGTCAACTTGTCTG 100 92
JH254_RS15340 3297832 .. 3297847 - -11.8   -4.0616   GACCTGAATGAGAAA              GGGGCC CGAG GGCCCC               TTTTTGCTGGCTGGC  87 49
        glnK NONE
JH254_RS15320 3294227 .. 3294254 - -25.6  -5.48825   GAGCACCCAAAAAAA        CGGGGCCCGGGG TGTC CCCCGGGCCCCG         CAAGCAGATGGCGTG 100 42
JH254_RS15310 3292332 .. 3292346 -  -4.2  -4.82128   CGATCAAACAGAAAA               GCAGCT TGC AACCGC               AGCGATTGACACAAG  77 502
JH254_RS15265 3278542 .. 3278552 -  -3.2  -3.58533   TGATAATGGCGGAAA                 TGGC CTG ACCA                 GTTGTGGTGCAAGGT  50 337
JH254_RS15260 3277393 .. 3277413 -  -6.8  -2.62616   CGAGCCTCGAGATCA           CCCCCTCGG CGGC CCG-GGGAG            AGATAGCCCGCGCTC  48 268
JH254_RS15250 NONE
JH254_RS15245 NONE
JH254_RS15240 NONE
JH254_RS15235 NONE
JH254_RS15230 NONE
JH254_RS15225 3271305 .. 3271328 - -16.8  -3.15544   CGGCATGCTGAGCAA          GGAAGAGGCC TGAG GGCCTCTTCC           TCGTCTGGAGGGTCA  88 38
JH254_RS15215 3269036 .. 3269056 -  -4.7  -3.35597   TTCATCCCTGAAAGA           CGG-ACGG GCAGGG CCGTGCCG            CAAAACTCCAGCCTC  49 135
JH254_RS15210 3268065 .. 3268086 - -17.3  -4.63932   CAGGCGGCAATAAAA           CGAGGCGCC CAAG GGCGCCTCG            TTCAATTTGGGGTCA 100 57
JH254_RS15195 3265053 .. 3265072 - -16.4  -3.32963   ACCGTCATGCGAGAA            CGGGGGCC ATCA GGCCCCCG             TTTTGCTTTTGCAGA  90 58
JH254_RS15185 3262343 .. 3262364 - -14.5  -4.14627   GGGTCAGATAAACAA           CAGGCCATC ATGT GATGGCCTG            TTTTTATGGTGGCAT 100 54
JH254_RS15175 NONE
        ydiK 3259248 .. 3259267 -   -15  -5.09762   CGGTAATAAACAAAA            GAGCCGCC CTGG GGCGGCTC             TTTGCATCGGGGATG 100 50
JH254_RS15165 3258170 .. 3258193 - -18.2  -3.35679   CGGTGTGACGCAGAA          CAAGGGGCGC CTCG GCGCCCCTTG           TCCTTGCTGGCGTTC  91 54
JH254_RS15135 NONE
        dhaR 3250615 .. 3250627 -  -2.6  -3.92143   CAAAAGGGGGAGAAA                GAGG CGAAT CCCC                GCAGCCTGAGCCGGC  54 216
JH254_RS15100 3244776 .. 3244795 - -13.6  -3.69395   GCCACTACTTAAGAA            GCCCAGTC GAAA GACTGGGC             TTTTTTTCGTCTCCA  84 97
JH254_RS15075 3242702 .. 3242733 - -11.6  -3.92373   TACGGCATGGAGAAA      CAGACCCACGGCGAG AAG CTCTCCG-GGGTCTA      TCGCCACCACCGCCT  81 477
JH254_RS15065 NONE
JH254_RS15060 3239169 .. 3239186 -  -4.7   -2.5409   ACAAGGTTGAACTGA             CTCCGGC CCTG GCCGATG              CCAGCCTGTGGCATA  43 453
JH254_RS15050 3236998 .. 3237049 -  -3.5  -3.11073   GAGTGTAGCGAAAAT CGCCGCCGGG-ATCACGCCGCCTGC CGAA GCGGG-GGCACGTTGCCCCTCAGCG CTGGCCCTGGTAGGG  46 20
        yidA 3236096 .. 3236112 - -15.1  -3.46602   GGCCGGATAGCAGAA              GGGGCCC ACA GGGCCCC              TTGTCGACTCAGGCG  88 34
JH254_RS15040 3234609 .. 3234632 - -11.7  -2.62983   TCCAGGTGGACATGA          CCCTGCCCC TGAAAC GGGGCAAGG           TGGTGAATGGCCGGG  65 380
        cyaY NONE
JH254_RS14995 3228378 .. 3228397 -   -15  -4.10953   AGGGATGAAAGCAAA            CGGCCTGC TGAT GCAGGCCG             TTGTCTTACCCGTGA 100 49
        hemC NONE
JH254_RS14980 NONE
JH254_RS14975 NONE
JH254_RS14970 NONE
JH254_RS14960 3218741 .. 3218759 - -13.8  -5.15634   CATCGCATGAAAAAA             CGGGGCCA TTT CGGCCCCG             TTTGATTGTGTACTG 100 73
JH254_RS14925 3207630 .. 3207642 -  -2.6  -2.51471   CAGAACCCCATGAAC                CCGG AGTGA CCGA                ACATGTCATCGTCAT  37 204
JH254_RS14915 3205864 .. 3205891 -  -2.5  -3.31461   TATTGAGTCTGACAA        CGGCGCTTGTC GGGAAG GATCTGCGCCG         TTTTCTCACTAGAAA  44 117
JH254_RS14910 3204730 .. 3204751 - -13.1  -4.60797   CTCTGATACAGAAAA           GCCAATGAG TCTT CTCATTGGC            TTTTTGTTTTGGGCG  95 45
JH254_RS14900 3202649 .. 3202668 -   -15  -3.75024   GTTCACCATGAAGAA            CGGGAGGC CTTG GCCTCCCG             TTTTGCATCTGCGTG  95 49
JH254_RS14870 3193091 .. 3193106 - -10.4  -5.86976   TCAGAAAAGAAAAAA              CCCCGA AATA TCGGGG               TTTTTAGGCATTTCG 100 77
JH254_RS14865 NONE
JH254_RS14860 3190115 .. 3190132 -  -2.1  -2.74605   CTCTGCTAAAATTGA             CT-GATAT ATT ATATCCAG             ATTTTCTAGCTTGAG  39 194
JH254_RS14855 NONE
JH254_RS14850 NONE
JH254_RS14845 NONE
JH254_RS14840 3184846 .. 3184856 -  -3.2  -3.68325   TACAGTGTAATACAA                 GCAC TTG ATGC                 AACAATCTCGCTACA  54 251
         rrf 3179282 .. 3179301 -   -15   -5.4833   TCAGGCAATAAAAAA            CCCCGCTC GAGT GAGCGGGG             TTTCTCGTGTTGGGT 100 41
        ilvC 3173547 .. 3173567 - -18.3   -4.3208   CTCCAGAATGCAAAA            GCCCCGCTC GAT GAGCGGGGC            TTTTTTATAGGCTTC 100 142
JH254_RS14785 3171219 .. 3171233 - -12.8  -5.21709   TGTGACATGAAAAAA               CCGGCC ACA GGCCGG               TCTTGCGCACCAGAT 100 53
        radC 3166256 .. 3166291 -  -6.2  -3.72893   CATTGCTCGAGCAAA    TATCTGCCCCGC TGGCCTTCGATT GCGGGGCAAACA     GAAGGCGGCATTTTA  61 88
        rpmB NONE
        rpmG 3165763 .. 3165779 - -10.8  -5.64274   CCAGCCATAAAAAAA              CCCGGC ACGAG GCCGGG              TTTTTGCAGCGAAAC 100 48
JH254_RS14735 NONE
        mutM 3164245 .. 3164274 -  -4.9  -3.88498   TCGGGATAGAGGAAA       CGGGCCATATCGT GGGC ACGATAGTGCCCC        TGCCGGGATAAATGT  59 180
JH254_RS14725 3163333 .. 3163358 - -17.7  -3.51411   ATGGGCCGAAACGAA         CAAGGGCTACC CGCG GGTAGCCCTTG          TTGCATCAAGGCACT  95 47
JH254_RS14715 3161249 .. 3161281 - -14.9  -2.78725   ACATCCCATTAATCA      CTCACCCCTTGTTCC AGC GGGACAAGGGGCGAA      CCCCATTGCCATGGA  81 303
        waaF NONE
        waaA 3157703 .. 3157737 -   -15  -2.87132   GGGGTTTGGCAGACA    TGCTGGCGGGGCGGC CACCAC GCCGCCCCGCCT-CA     GTCGTCACTTTCCAG  81 23
JH254_RS14695 3156680 .. 3156706 -   -21  -2.77899   CCCCGCCATCAAGCA         GAGAGGGTCTGC CAT GCAGACCCTCTC         GTTTTTCCGAACCAT 100 64
         rph 3154816 .. 3154831 -  -7.5  -5.61596   AGGGGTATAAAAAAA              CGCGG ACAGTG CCGCG               TTTTTAAAATCATGC  95 35
        pyrE 3154013 .. 3154030 - -14.1  -5.79595   TGTGAAAATAAAAAA             CGGCGCC GTTG GGCGCCG              TTGACGGGATCGGCT 100 107
        cadA 3151478 .. 3151495 -  -4.1  -3.15544   GCTGATGTTCATGAA             TGACTCC TTTG GGATTCA              GATGCACGCAGGCTG  46 1
        cueR 3151008 .. 3151020 -  -4.8  -3.15663   ATCGACCGCTATTAA                GCTG CCACT CAGC                GCGTCCCCTCCCGCA  47 90
JH254_RS14665 3149785 .. 3149799 -  -2.1  -3.11732   GTGAAACTCAGGCAA               CCTTA CCCAT CAAGG               CTACTTCGATACGAT  42 3
JH254_RS14660 3149406 .. 3149431 -  -9.7   -5.5074   TAAGGCAACAAAAAA         GGCCCATAGCC AGTT GACTATGCGCC          TTTTCACAGATTCTC 100 77
        ccoG 3147769 .. 3147786 - -14.1  -4.57755   ATCCACCATAGAAAA             GGGGCGC TGTT GCGCCCC              ATTCTATCACCACTG 100 76
JH254_RS14650 3146664 .. 3146683 - -11.4  -2.98088   TGGCAAAGGCAGACA            GGCGGGAC CGCC ATCCCGCC             TCCCACGGGCACCTT  70 115
JH254_RS14645 3145909 .. 3145932 - -19.6  -5.28942   GACGCCAAACAAAAA          GCCCGCCGGT TTGC ACCGGCGGGC           TTTTGTATCGACTCA 100 48
JH254_RS14630 NONE
JH254_RS14625 3142231 .. 3142244 -  -3.7  -4.15044   GTTTCTGTTAAGAAA               TCCGC ATCT GCGGG                GCAAGGATATCGAGA  63 459
JH254_RS14605 NONE
        ilvM NONE
JH254_RS14595 3135906 .. 3135940 - -15.1  -2.53263   CGGATCGGGAATCGA    TCCTGGTGAAGGCACC TCGG GGAGCCTTCACC-GGA     AGCGACTCGGGGAGG  80 62
        ilvD 3133908 .. 3133950 -  -5.5  -3.48395   ACCTTGCGTAGATAA TCCGCCGCAGAGACCATGGT TTAT ACCCCCGTCTC-GTGGCGAA GGGCGCGCAATGCGC  54 64
        ilvA 3132342 .. 3132360 - -13.2  -5.93809   TGCCCATAAAAAAAA             CGAAGAGC CGG GCTCTTCG             TTTTTCATCTGGCAA 100 57
        ompA 3130961 .. 3130988 - -21.4  -4.07868   TCACACCCACATAAA        CAACGAGGGGGC CAAG GCCCCCTCGTTG         TTTAATAGCAAGGCA 100 49
JH254_RS14570 3129451 .. 3129488 -  -9.7  -3.14132   CGGTCGCGCCAGCAA   GCCCGGGCTGGTGGTGC TGCA GAGCCACCACCCCGAAC    ACGCCCTGCTGCAAG  61 411
        rpmE 3127264 .. 3127280 - -11.5   -5.4505   GCGGCCAATAAAAAA              GGCACCC GAT GGGCGCC              TTTTTCAGAATTCTT 100 52
JH254_RS14555 3125678 .. 3125689 -    -3  -4.50976   TTTCACAGCATAAAA                TATC GCTG GATA                 GCAATGACACGCCAG  64 93
JH254_RS14550 3124273 .. 3124293 - -16.1  -4.72272   TCCCGCCATGAAAAA            GGGGCCCCC GAC AGGGGCCCC            TTCTGTTTTTTGCGT 100 53
JH254_RS14525 3118876 .. 3118915 - -17.8  -4.07568   CCGGGCTGGGGAAAA  GGGCAGTGTGCCAGCCCG GGGA CGGGCTGGCAAACACCCC   GCCCCCGCCGGCATC 100 58
JH254_RS14520 3117968 .. 3117980 - -10.5  -3.14344   GAGCGCGTCGACGAA                GGCGG CAA CCGCC                AGCAGCTGCTCATCC  68 365
JH254_RS14510 NONE
JH254_RS14505 3114771 .. 3114806 -  -4.7  -3.16564   TCGGGAGGTTATGAA    CGCGCACCTTTCC TTGACTCGCT GGCAAAGTACGCG     GCGGCCTCCTTTAGA  47 473
         def NONE
         fmt 3104515 .. 3104533 -  -8.1  -3.39505   ACCTTAGATGCACAA            GTCGGGGC CAGG GCCCCG-C             TTGTGTCAATTCAAT  64 46
        rsmB 3103163 .. 3103185 - -12.7  -2.70932   GTTGCTTCGTAATGA          GGC-GGCCCG TCAC CGGGCCTGCC           ATCCGCCGGTTCGGC  73 41
        trkA 3101687 .. 3101720 - -12.5  -5.08824   CGTTGATTGAAAAAA     GACCCGG-ACCTTTCC TGA GAAAAGGGGCCGGGTC     CGGATACCGTTGCCA 100 55
JH254_RS14430 3100157 .. 3100187 - -24.2  -3.28924   CATTCGCCGGGACAA       CGAAAAGGGCAGCC ATT GGCTGCCCTTTTCG       TTTCATGCAACAGCC 100 52
JH254_RS14415 3097901 .. 3097924 - -18.2  -2.72344   TGCCACGGTGAATGA          CAGAGGGGCC TGCG GGCCCCTCTG           TCATTGCTGGCGGTC  86 39
JH254_RS14380 3090678 .. 3090698 - -12.5  -2.59564   CTGTTACGGGAGAAG            GCCCGTCAG AAG CTGGCGGGC            GTGTTGGCCGAGATC  73 10
JH254_RS14375 3088890 .. 3088905 - -10.4  -4.27774   AGTAAAAATGAGAAA              GGGGGA TTTC TCCCCC               CTGTTTTGTTGATAA  86 56
JH254_RS14370 3088625 .. 3088653 -  -5.9  -3.06162   GACGGGATTTTAACA        GCAGGAGCGAC TTCAGCG ACCGCCCCCGC        GGCGGATCTTCTCCA  52 9
        rarD NONE
JH254_RS14360 3086679 .. 3086691 -  -3.3  -3.94773   GGTGAACATAAAAGA                CCTCT GAC AGCGG                TATGGAGGTGACAGC  56 92
JH254_RS14355 3085905 .. 3085922 -  -4.7   -3.4072   CAGGGCCTATGACAA             CGGCGCC CATC AGCGCTG              GGGCAGCCCGGGGGA  53 137
JH254_RS14340 3083496 .. 3083506 -  -3.2  -3.50853   TCGGGGGAAGGACAA                 CCGA GGG TCAG                 GAGTCGTGGCGCTCC  48 51
JH254_RS14335 3082898 .. 3082911 -  -3.8  -2.76696   GGTCGCTGCAAGAAC               GCAG CCCGCC CTGC                CCACAGAGATACCTG  43 104
JH254_RS14330 3082168 .. 3082185 - -12.7  -3.97947   TTCAGCGACGACAAA             GCCTGCC CCCT GGCAGGC              TTTGTCGTTTTCGGC  89 46
        ydfZ 3081094 .. 3081122 - -13.2  -4.13246   GAGCGGAGAGAGAAA       CCCGGCCAGCGACG GGG CGT-GC-GGCCGGG       TGAATTGTAAAGAGT  91 60
JH254_RS14310 3079642 .. 3079673 -  -9.2  -4.42653   ATGGCAGGCATAAAA      GCAGGCGGCAGGGC CCGG GCCTCGCCGCCAGA       TGACACGCACCGGCT  81 40
JH254_RS14305 3078448 .. 3078473 -  -3.3  -3.54543   ATTGATTCCGCGAAA         GTCCGATGA-CG CTT CGCTAATCGAAC         CTACATGCAGGCGGG  50 78
JH254_RS14295 3077062 .. 3077083 -    -8  -2.89602   GTTTGGAGAGCAAAT           CGTGACGT TGCCAC ACGCCACG            CACACCGCCCGCACT  58 479
JH254_RS14285 3075023 .. 3075033 -  -4.6  -3.62597   GTGAGCCTCGAAGAA                 CGGC AGG ACCG                 TTTCGTTGAGCACAT  54 145
JH254_RS14270 3070939 .. 3070956 - -14.1  -4.85129   AGTAGAGACTAAAAA             CCGGCCC GTGC GGGCCGG              TCATCACTGGTTGAG 100 71
JH254_RS14265 3069228 .. 3069244 -  -4.3  -3.19091   ATATCCAGGCAGGAA              CACGTGC TTG GCTCATG              AATGGGCCTCCTTGA  47 104
JH254_RS14260 NONE
JH254_RS14255 3067110 .. 3067137 - -14.2  -4.56597   CCGTCGCCCGAAAAA        GAAAAGGCCCGC ATGT GCGGGCCTTTTG         CATGGCATGAAGGGC 100 45
JH254_RS14245 3064895 .. 3064907 -  -2.6  -3.09015   TCCAGATTCATGTAA                GGAC TCCTT GCCC                CGCCCATGTATCGAT  42 60
        fghA 3063972 .. 3063987 -  -3.2  -3.03159   GCAATGTGGTGAAGA              GAGGCA TCCT TGTCTC               CTGTTTCCGGGTGAA  42 80
JH254_RS14235 3063424 .. 3063437 -  -9.5  -4.99435   CGCAACAATGAAAAA               GGCCC CTCG GGGCC                TTTTTTGCAGGATGC 100 60
        ovoA 3060191 .. 3060213 - -19.2  -4.06419   GGTCCGGATAAAGAA           GAGGGAGGCC ATG GGCCTCCCTC           TTTCGTTTGCCGCGT 100 43
JH254_RS14155 3042901 .. 3042923 - -17.8   -4.1891   GGCTTGCAATAGAAA           GAGGGAGGCA TCA TGCCTCCCTC           ATTTTTTAGCCCTGA 100 131
JH254_RS14115 3037141 .. 3037168 - -16.4  -3.59979   GCCGCCTATGGTAAA        CGGACTCGTCCCC GAG GGGGA-GAGTCCG        GAGCATGAAAATTAT  95 40
JH254_RS14110 3036375 .. 3036394 -   -15  -5.90981   TCACATCAAAAAAAA            CGGGAGGC CATG GCCTCCCG             TCTGCATAAGGGGGT 100 55
JH254_RS14105 3035876 .. 3035899 -   -11  -5.40072   TCGCGGGCAAAAAAA          TAGGAGGGGC GATG GCTCCTCCTA           CGGGTTCACTGGCGC 100 45
        rsgA NONE
         psd NONE
JH254_RS14050 NONE
JH254_RS14045 NONE
JH254_RS14040 3030833 .. 3030852 - -11.4  -4.77036   GGGTATCATGAAAAA            CCCCGCTG CGTG CAACGGGG             TTTTTTTATGCCTGC 100 80
JH254_RS14030 3028138 .. 3028167 - -20.9  -4.57073   TACGCTTTGCAAAAA       CAACAAGGCCACC CTCG GGTGGCCTTGTTG        TTGCTGGCTTACTGC 100 34
JH254_RS14020 NONE
JH254_RS14015 3027203 .. 3027224 - -17.3  -4.72846   TGACAGATGCAAAAA           GGCCCGCTC ATCT GAGCGGGCC            TTTCGAATTTGGCTC 100 35
JH254_RS14005 NONE
JH254_RS14000 3021447 .. 3021472 - -19.1  -3.33696   GCTCTCCTCAAGCAA         CAAGGGCTGCC CGCG GGCAGCCCTTG          TCATTTTCAGCCCTC  95 39
JH254_RS13970 3016209 .. 3016229 - -12.6  -5.35222   AAAATCCATAAAAAA            GGGCAGGT TTGGC ACCTGCCC            GAATTTTATCGTCCC 100 97
JH254_RS13965 3014881 .. 3014899 - -14.6  -5.81412   GCGAGGCAAAAAAAA             CCAGCGAC GGG GTCGCTGG             TTTTTTTATGGCCGG 100 46
JH254_RS13955 3012133 .. 3012150 - -11.3  -2.87564   TGATGGCTCGACACA             TCCCGAC CTCG GTCGGGA              TGTGTCATTGGGTCA  69 38
JH254_RS13940 3008176 .. 3008194 - -11.6  -4.81083   CCGAACCATGAAAAA             GCCTCCGC TAT GCGGGGGC             TTTTTGCTGGGCAAG 100 69
JH254_RS13920 NONE
JH254_RS13915 NONE
JH254_RS13910 3001625 .. 3001644 - -11.4  -4.86621   AGCCCCAATGAAAAA            GGGCCTGC TGTG ACAGGCCC             TTTTTCATTTTCTGT 100 52
JH254_RS13900 2999906 .. 2999919 -  -9.5  -4.55287   CGCAGTCATAGAAAA               GCCCC TTGC GGGGC                TTTTTTACTTGGAAT  87 91
JH254_RS13890 2999006 .. 2999022 -  -7.9  -3.02829   GACAGGGCTCCAACA              GGGGGCA TGA TGCCCCG              TGACCAGAGCACACT  56 103
JH254_RS13885 2998317 .. 2998333 -    -5   -4.2349   TGGGCATAGGTAAAA              GGGGGC GAGCG GCCACC              AACTGGTGACCCACT  67 88
JH254_RS13880 2997868 .. 2997920 -  -7.2  -3.05963   ATTTTGAGCCTAACA GTGATTAGATGGATGGTGGTATTAA CACA TTAATACCGCCGTCTATCTAA-CTC CGCTTCACTTTGATT  57 40
JH254_RS13875 2996852 .. 2996868 -  -2.1  -3.10905   TGATAAGCCATGTAA              CGCCCGC AGC ACGGGAA              AAATTGTAGCGCAGC  42 75
JH254_RS13870 2995679 .. 2995692 -  -2.3  -3.48924   GCAGGCGGGAGAGAA               TCCCC TAGA GGGCA                GTGGATCCATTGGAC  46 190
JH254_RS13865 2995163 .. 2995179 -  -4.3  -2.78816   TGAGCCCCCATTACA              CCCCTTG TCC CATGGGA              CAGAGTCAAGCCACC  44 31
JH254_RS13860 2994474 .. 2994491 - -14.1  -4.46212   GCCTCGACGACAAAA             GCCCCGC AACT GCGGGGC              TTTTTAATGGGTAAA 100 59
JH254_RS13815 2983383 .. 2983402 - -12.1  -5.37043   AGCGGACATAAAAAA            GCGCCGG ACCAGG CCGGCGC             TCTTCGCTTATTCCC 100 59
        mdtH 2981030 .. 2981055 - -20.5  -5.55695   GAAGAAGATAAAAAA         GGGCGCCCTTC AAGA GAAGGGCGCCC          GGGGTAGACGGGATG 100 53
JH254_RS13795 2974104 .. 2974120 -  -3.5  -2.62184   CCTGCCTTCATACCA              GCCCCCG AAT CGTGGCC              AATAGTTCAGCGCTT  42 1
JH254_RS13790 NONE
JH254_RS13785 2970142 .. 2970173 - -17.4  -3.87815   GGTGAGCGCCAGAAA      CGACAAAGCCGCTC AAAA GAGCGGCTTTGTCT       GAAAATGGTGGCCCT 100 257
        zntR NONE
JH254_RS13740 2960931 .. 2960945 -  -2.7  -4.57569   GCAGGTGGCGAAAAA               CGCGC CGATT GTGCG               CCTCTTGCCTCCCCC  67 51
JH254_RS13735 2960585 .. 2960613 - -23.3  -5.10767   CAGCGAATAGAAAAA        CAATCAGGGCGCC ATT GGCGCCCTGATTG        TGTTAGCTGATGCCT 100 57
JH254_RS13720 2957213 .. 2957229 - -10.8  -4.07746   GCCTGAAAAAGAGAA              GGGGGC TCAAG GCCCCC              TGAGTGTGCTCATCA  81 52
JH254_RS13715 2956031 .. 2956048 -  -4.1  -4.31835   AATTCGCACAACAAA             TCGCCAA TTAC CTGACGA              TTGCCAGTCAGCTAT  63 81
JH254_RS13710 2955504 .. 2955531 - -25.6  -5.67967   ATGACCATAAAAAAA        CGGGCCCGGCGC GAGT GCGCCGGGCCCG         TTTTTCAATGAGGTG 100 46
        cobA 2952452 .. 2952469 -  -4.7  -2.74144   GCCGCACCGTCAAAT             CGATGGC TGTC GCCGCCG              GCGCTCAGGCCAGGC  44 30
        cysD NONE
        cysN NONE
JH254_RS13680 2948229 .. 2948248 -  -5.8  -4.37886   GCAGCCTTGATAAAA            GCTGCGTTA ACA TAA-GCAGC            CCTTAACACATCCCC  72 53
        cysC 2946971 .. 2946984 -  -6.7  -3.49618   CCGCGATATAAGCAA               GGATC GGAA GATCC                CCTTGCGGGGTTACG  58 381
JH254_RS13610 2935118 .. 2935133 - -11.8  -5.00884   ATTCCTCGCAAAAAA              GGCGCC TTAT GGCGCC               TTTTTTATGGGTCGT 100 16
         mpl NONE
JH254_RS13595 2932302 .. 2932333 -   -23  -3.32343   TGCAGATGTTGACAA      CGCGGCGCCGGGCT TTAC AGCCCGGCGCCGCT       TTTTTGTCCGCTCCC 100 48
         hpt 2930865 .. 2930882 -  -9.8  -4.60797   TCTCGAGACAGAAAA             GGCGGC TGTGAC GCCGCC              TGAAGACAGTCGATG  87 79
JH254_RS13580 NONE
JH254_RS13575 2929098 .. 2929113 - -11.8  -5.27938   ACGTGCAAATAAAAA              GGCGCC CGAG GGCGCC               TTTTTGCTGGCGGGT 100 48
        hrpB NONE
        mrcB 2916867 .. 2916886 -   -15  -4.09739   GCAATCCTTGCAAAA            CGGGCAGC CTGC GCTGCCCG             TCTTCGTCAGTTGAA 100 32
JH254_RS13515 2916385 .. 2916406 - -17.3  -5.16237   AACCCCATGAAAAAA           GCCGCCCTG TTCC CAGGGCGGC            CTTTTCATGGTCAAA 100 68
JH254_RS13500 2914452 .. 2914475 -  -5.2  -3.53012   GTGGTCCCCCTCAAA          CAGGCCGC CATTTTCT GCGGCGTG           GCGGCGGGTCTGCTG  53 170
JH254_RS13490 2913139 .. 2913160 - -15.9  -4.06502   GAGGCGTAAACGAAA           GAAGGCGGG GTGA CCCGCCTTC            TTTTTTCATTCTTCG 100 41
JH254_RS13485 2911976 .. 2911990 -    -7   -3.3382   GGGATGACATACCAA               CGCGGG GCG CCCGTG               CAGGCGGGCCTCGCC  56 49
        clcA NONE
JH254_RS13465 NONE
        erpA 2906806 .. 2906821 - -11.8  -4.84033   ATACAAAAATGAAAA              GGGCCC CTCG GGGCCC               TTCATATCACGCTGC 100 48
JH254_RS13455 2904675 .. 2904687 -  -3.3   -4.1721   ATTCACATCCCAAAA                CCCAA TGA TAGGG                CTTCTCTTGTTCAAC  58 145
JH254_RS13450 2904451 .. 2904479 - -13.4  -4.65747   CAAGGCTGAAGAAAA        CAGAGTTAAGAA TTTCG TTCTTAACTCTG        CATTCTTGTTAGCAA  95 50
JH254_RS13405 2892590 .. 2892606 - -13.7  -5.08255   ACCTGCAAAAGAAAA              GGCGGTC AAT GACCGCC              TTTGTAACAAACCAT 100 53
JH254_RS13400 2892166 .. 2892183 -  -4.1  -4.58685   AAACCGTGGCAAAAA             GGGGT GACAGCAT ACCCC              AGAGAGCACACAAAC  69 68
JH254_RS13395 2891570 .. 2891585 - -11.8   -5.0916   CGCGGAATAGAAAAA              GGCGCC GAAA GGCGCC               TTTTTTATTGAACTC 100 44
        mnmC 2888145 .. 2888161 -  -9.4  -5.88197   GGAAACATAAAAAAA              CGGGCT GATTG AGCCCG              TTTTTTTGTTGGTGC 100 81
        dcuC 2885789 .. 2885806 - -14.1  -2.62184   GTGGGGGGGATACCA             GCCCGGC GGCA GCCGGGC              CGGTAAAGAGTCAGG  78 36
JH254_RS13370 2884044 .. 2884074 - -12.5  -2.72144   CTATGCGGGGGAAAG       GCGGCACCGACCC GGGAT GGGCCGGTGCCAG       ATTCACTGGCCGTGA  73 28
JH254_RS13365 2882117 .. 2882139 - -14.9  -4.51174   TGACGACAACGAAAA           GGGGCCATC ACCAG GATGGCCCC           TTCTGTGTGCCTGAT 100 40
JH254_RS13360 2881427 .. 2881444 -  -6.9   -2.5474   CGGCAGGGAGAAGAG             CCAGAGC ATCA GCCCCGG              GAGCAACCAGTGCCC  50 100
JH254_RS13355 2880521 .. 2880541 - -16.9  -4.08064   AACCGCTCTTCAAAA            CACGCAGCC TCG GGCTGCGTG            TTGCGTTGATGGGGT 100 170
JH254_RS13345 NONE
        ykgO 2879494 .. 2879510 - -10.1  -4.04318   CCCAGAGATGACAAA              GCCCTCA TGA CGAGGGC              TTTTGTTATCCATGA  79 57
JH254_RS13315 NONE
JH254_RS13310 NONE
        araA 2870532 .. 2870551 -   -15  -4.07246   GGACGCGAAATGAAA            CAGCCCCG CGGG CGGGGCTG             TTGTCATTGTGATGG 100 60
JH254_RS13295 NONE
JH254_RS13290 2867523 .. 2867547 -  -4.8  -2.72511   CCTAGCGTGCTAAAG          GGTGCCGGCC TCAAG GGCCGACGGC          TATCTTGCGATGGGT  43 11
JH254_RS13285 2866636 .. 2866669 - -17.5  -4.09243   GAGAGGCCGGGAAAA     CGAC-ACAGGGCGGCC AAT GGCCGCCCTGTTGCCA     TGGCCCCTTGCAACT 100 65
JH254_RS13270 2862315 .. 2862331 -  -6.5  -2.92613   CTGCATGGTAAACCA              TCGCGCT GGC AGAGCGA              AGTCCGGGGCGTTCG  53 101
        sbcB 2860680 .. 2860694 -  -7.8  -3.66803   CCCCAACAGTCGAAA               GCACGG CAT CCATGC               CGTCAGCGCATCTAA  63 132
JH254_RS13260 2860107 .. 2860122 - -10.4  -4.62069   GTTGCACTGCAAAAA              GGCTCC CTCG GGAGCC               TTTTTTACGTGGCGA  93 49
JH254_RS13250 NONE
JH254_RS13245 2857165 .. 2857192 -   -17   -2.9348   GTGAAAGGGCACAGA        GGCCATGGCCGC AGGG GCGGCCATGGCA         ACGGGGATCAGGTCA  89 33
         cdd 2856049 .. 2856072 - -16.8    -3.322   AGGGGCAGAGAGCAA          GAAGGGGAGC CGCA GCTCCCCTTC           CCGTTGGCGGATGCC  90 45
JH254_RS13220 2851329 .. 2851347 -   -16   -5.4505   CGGGGCAATAAAAAA             GCGCGACC CTG GGTCGCGC             TTTTTGTTTGGCCAT 100 59
JH254_RS13190 2843503 .. 2843529 -  -5.6  -5.00616   TGTTCGCTCAAAAAA         GCGGCGAGGTCG GAT CAGCCACGCCGA         CCTCGAAACGGGCGA  80 220
        corA 2842310 .. 2842330 - -14.7  -3.33815   ACGGCCGGGAATTAA            TCGGGGGGC CAT GCCCCCCAA            TCCGCAGTCTTTAGT  83 56
JH254_RS13180 2841574 .. 2841618 -  -8.5  -3.11072   GCGAGGCAACATACA CACCGG-CCAGAGTGCCACC GAGGTG AGCGGCGCCCCGGGCCAGTG GCTGACGGTGGGGGA  57 162
JH254_RS13170 NONE
JH254_RS13165 2837473 .. 2837496 - -19.6  -4.84529   GCAGAAACGCAAAAA          GGGAGCCCCG CGAC CGGGGCTCCC           GCAGACAGGATGGAT 100 40
JH254_RS13160 NONE
JH254_RS13155 NONE
JH254_RS13150 2834438 .. 2834479 - -20.3  -2.85621   AACGCCAACGCAAAG CCCAGAGAAAGAAACCGCC ATCA GGCGGGTTCTTTCTCTGGC  ACAGGGTATGGCTCA 100 38
JH254_RS13140 2832499 .. 2832521 - -17.8  -4.88067   AGCGATGGATAAAAA           GAAGCCCGCA TCA TGCGGGCTTC           TTGTTGGCTGTAAAC 100 50
        rpmH NONE
        rnpA NONE
        yidD NONE
        yidC 2825864 .. 2825881 - -14.1  -5.46657   CATTGTAATAAAAAA             GGCGGCC CGAA GGCCGCC              TCTTTTGTCATCAGG 100 57
        mnmE 2824400 .. 2824418 - -13.1  -5.28826   AAAGCGCACAAAAAA             GCCCGGG ATGAA CCCGGGC             TTTTCATTGCCTGCT 100 49
        mioC 2815979 .. 2816014 - -14.8  -3.29511   GGGATCTGGGGATAA    CCAGGGAGATCGGG GGTCGTGA CCGGATCTCCCTGG     CCCTGATCAGCCGAT  86 32
        mnmG NONE
        rsmG NONE
JH254_RS13055 NONE
JH254_RS13050 2811065 .. 2811075 -  -6.8  -5.11033   CAGAACTGTAAAAAA                 TCGG GAT CCGA                 AGACCCCAGGTTCAC  86 188
JH254_RS13045 NONE
        atpB NONE
        atpE NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG NONE
        atpD NONE
        atpC 2804111 .. 2804126 - -10.4  -6.07627   ACGGGCAAAAAAAAA              GCGACC CGAA GGTCGC               TTTTTGCATCACCGT 100 43
        glmU 2802647 .. 2802666 - -16.4  -5.68023   CCATAAGCAAAAAAA            CCGGCGCC CTCG GGCGCCGG             TTTGCATTTCATTGA 100 48
JH254_RS12975 NONE
        glmS 2795271 .. 2795299 - -14.7  -4.09509   ACCAAGCCAGACAAA        CAAAAAGAGCCGC AAT GCGGCTCTTTTTT        CATTTCCGGCGACGG 100 42
JH254_RS12960 NONE
JH254_RS12955 NONE
JH254_RS12950 NONE
JH254_RS12945 NONE
JH254_RS12940 NONE
JH254_RS12935 2789116 .. 2789132 -  -6.7  -4.26589   ATCAGACATTGAAAA              TCAAAAA TTG TTTTTGA              TGCTCGATGCTGTGA  71 325
JH254_RS12930 2787375 .. 2787394 -  -6.4  -3.52539   GAAGTTGAATCAGAA            CCGATGCA TTTC TGCACCAG             GTCTTTGCTCTAACT  56 95
JH254_RS12925 2787059 .. 2787087 - -14.1  -4.64676   CGAGGCCGAAGAAAA        CAGACATAAACAT GTG ATGCTTATGTCTG        CATTCTTGAGCTGCG 100 49
JH254_RS12920 NONE
         rrf NONE
JH254_RS12910 2783583 .. 2783602 - -13.6  -5.79588   CGAAAACGAAAAAAA            GCCCAGTC GTTA GACTGGGC             TTTTTAAGTAGTGGC 100 37
        tcdA 2782542 .. 2782573 -   -16  -3.51934   GGGGCTTGAGAAACA      CT-TGAGCCCGTCGC GAG GCAACGGGCTCAGAG      CTATTGTGTTGGCAA  89 82
         rep 2778659 .. 2778669 -  -6.8  -4.12188   GCAGCAGTTGCAAAA                 GCTC ATC GAGC                 TTGGCTGCGCCCTCG  69 131
        rfaD NONE
JH254_RS12855 NONE
JH254_RS12850 NONE
JH254_RS12845 NONE
JH254_RS12840 2765582 .. 2765592 -  -5.4  -3.11634   GGGCACATCACCGAA                 TGCA CCC TGCA                 GTCGCACGTTGCGCA  50 393
JH254_RS12830 2764641 .. 2764656 -  -2.5  -4.05446   CGGCTGAAGCATAAA              GAAGG GTAGCT CCCTC               TTCTCACGAAGAGGT  56 76
JH254_RS12815 NONE
        ubiA 2762392 .. 2762408 - -13.7  -5.12068   GACACCCAACAAAAA              GGCCGCA TCA TGCGGCC              TTTTTTCATCAAGGA 100 51
        lexA 2759073 .. 2759102 - -20.9   -4.3467   ATCGGCAGATGAAAA       TGAAGAGGCCTCC CGCA GGAGGCCTCTTCA        TCGCATCGGATGCTT 100 39
JH254_RS12795 2758432 .. 2758459 - -21.4  -4.08216   GCATCGGCGCCAAAA        CAAGAGCCCCGC TCTG GCGGGGCTCTTG         TCTGTACAGGAAGAG 100 44
JH254_RS12790 2757643 .. 2757686 -  -3.9  -2.71731   GCCAGGCGGGAATCA GCATGGTGCGCGCCGG GATCACTCGCCAG CCAGC-CGCACAATGC GCGCGAAGTCGGCCA  42 0
        dinF 2755853 .. 2755863 -  -8.2  -3.01712   GCCTCTGCGCCAATA                 CCGG CTA CCGG                 TTGCATCTGATAGAG  57 438
JH254_RS12765 NONE
        cysE NONE
JH254_RS12755 2750442 .. 2750471 -  -2.7  -4.06419   GCTCGGCACAAACAA       GCCAGCACGTTGCA AAA TGCGCCCTGC-GGC       CCGGTATTGCTTAAA  58 127
        zapB 2750088 .. 2750118 - -21.2  -4.34402   CCCGGCAGACCAAAA       CAAGCGGGCCGCTC AAG GAGCGGCCCGCTTT       CATTCCGGTCAGTCT 100 49
        polA 2746204 .. 2746228 - -20.1  -2.72745   TGCAGCCACAAACAG          GAAGCCCGGCA TGA TGCCGGGCTTC          TCTTCTTATATAACT 100 66
JH254_RS12705 2738702 .. 2738730 - -13.2  -3.41569   GCACTCAGGCAAACA       TGAGCGAGGCCCG TTGC CGGGCCCCG-TCA        TCAGGAGGTCTTCTT  79 26
JH254_RS12700 NONE
        nhaD 2736251 .. 2736264 -  -3.7  -2.78032   GGTTGCCTAAAACAG               GGCGC TGTT GAGCC                ACAGGTGCGCCCCTA  43 3
JH254_RS12690 2735600 .. 2735619 - -13.6   -4.8622   CCTTGCAATGAAAAA            GCCCTGTC CATG GACAGGGC             TTTTTGCATCGGGGC 100 48
        dauA 2717387 .. 2717403 -  -6.6  -3.05384   CTGTCTGTGATTTAA              CGTGTT CAGCC AACACG              GGTTCGTTGCGCTGC  54 169
JH254_RS12605 2717164 .. 2717182 -  -7.4  -5.42514   CTAGAAATGAAAAAA             CCCGTTGA AAT TCAACTGG             TTATATTTGGCGGTG  93 33
JH254_RS12595 2714233 .. 2714248 -  -4.6  -3.92522   CCGGAAGGGCACAAA              GCCGGG CAGG CCCAAC               CTCCACGGTTTATCA  59 395
JH254_RS12575 2709639 .. 2709654 -  -2.5  -3.70773   TGGCATAGGGAAGAA              GCGAA CAAGTC TCCGC               GCAAGATGTGTGAAC  51 399
JH254_RS12565 2709276 .. 2709286 -  -5.4  -3.11687   GCAATCAGTACTCAA                 CGAT AAA ATCG                 CGTGGCATACGTCAT  50 37
        istA NONE
        istB 2706629 .. 2706643 -  -6.4  -3.31144   TCGCTAGCTGGAGAA               GGTAAC ACA GTCACC               CCACTTCTGCGTATT  54 113
JH254_RS12545 2705476 .. 2705491 -  -3.2  -2.63688   ATCCAAATCAATTGA              CCGGAT CGGT ATCCGT               CTTAGGTTGTGCTGC  40 2
JH254_RS12540 2705148 .. 2705176 - -23.3  -3.16267   CTCAATCAGACCTAA        GAAGGAAGCGGCC ATC GGCCGCTTCCTTC        TATGAGCCTGTTTAG 100 114
JH254_RS12510 2695258 .. 2695279 -  -8.7  -2.66316   GCCTCCAGCAGATGA           CGGCCGCTGC CCA GCAG-GGCCA           GGAAGAGGGCATGGG  59 192
JH254_RS12505 NONE
JH254_RS12500 2693410 .. 2693428 -   -16   -5.4505   TGCGCCAATAAAAAA             CGGGAGCC GAT GGCTCCCG             TTTTTTATTGCCTGC 100 45
JH254_RS12465 2686035 .. 2686047 -  -7.7   -3.4052   TTGTAAGTGAACGAA                TCGAC GTT GTCGA                GCAGGAAGATGTTAG  61 37
JH254_RS12455 NONE
        trpD NONE
       trpCF NONE
        trpB NONE
        trpA 2680585 .. 2680603 - -14.6  -4.84539   CAAGGAAATAGAAAA             GGGAGCCT GTC AGGCTCCC             TTTTACGTGGTTATG 100 87
JH254_RS12425 NONE
JH254_RS12420 2677545 .. 2677567 -  -2.7  -3.50133   GAGTGTGATAAAAAG          TGGGTCATTG TAGG CAATG-CCCG           TCATGGGCTCAAGGC  48 75
JH254_RS12415 2677202 .. 2677232 - -15.5  -3.01712   GGGCCGCCCTCAACA       GCAGAACACCGGC GCAAG GCCGGTGTTCTGA       ACAGCATGGCGGCGG  83 69
JH254_RS12400 2675055 .. 2675075 -  -5.3  -5.52384   TCCCGATGAAAAAAA            CGTGAACCG TTC CGGTTATCG            GGCCCTCAGCGCAGC  93 31
JH254_RS12395 2673812 .. 2673834 - -20.6  -4.43213   GGGAAGAGAGGAAAA           GGCCCCGCCA GGG TGGCGGGGCC           GGGGGATCAGCGCTC 100 32
        tauA NONE
        tauB NONE
        tauC NONE
JH254_RS12375 2670172 .. 2670189 - -14.1  -4.79223   TCAGATGATGAAAAA             GCCCGCC AGCC GGCGGGC              TTTTTGCTGGGCGTT 100 70
JH254_RS12330 2661065 .. 2661083 -    -3  -3.01791   AGCGCCTGCGCAACA             TCTTCCCC TAC GGGGATTA             CCGGGGGCTCTCCCC  43 159
JH254_RS12310 2658728 .. 2658759 -  -8.6  -3.29511   GGGAGTGGCTCACAA      GGCGCCGCCAGCGCA GGC CGCGCTGGTTG-GCC      ACAAATCAGGCAGCG  62 59
JH254_RS12305 2658028 .. 2658046 -  -2.4  -3.09415   CATAAACCAGAGAGA             CCCATG CTACTCC CATGAG             GCCAAATATCAATCT  42 79
JH254_RS12300 2657266 .. 2657278 -  -3.3  -3.53012   GGTCGTCGGTTCAAA                TCCGG CCC CCGCA                ACCAACTATTTGTAT  48 221
JH254_RS12275 NONE
JH254_RS12270 2651129 .. 2651167 -  -2.3  -3.08812   TGGTGCTCAAGAAAG  GGGTGAAGCTCATCAAGC CGCT GCTGG-TGACCGTCTCCC   TGGTGATGTCCGCCA  41 140
JH254_RS12230 2646382 .. 2646392 -  -6.8  -2.92175   GCGTAATATAGCAGA                 TGCG AGG CGCA                 CGCGCAGCAGCCGTG  53 61
JH254_RS12225 2644756 .. 2644792 -  -4.4  -3.65294   TCCCATAGAAACGAA   GAACCCCTACTCGTTGG GTGT CCAACTT-TCGGGGTTC    ACTTCACGAGGGCGG  54 76
JH254_RS12220 2642987 .. 2643000 -  -5.2  -3.61715   CACTTCCTGCAAGAA               GCCG ACATAG CGGC                CCTGAGGCCCTTGAT  55 417
JH254_RS12195 NONE
JH254_RS12190 2639609 .. 2639619 -  -2.4  -3.14344   CACGTGGGGGATTAA                 CGTC TCG GGCG                 CGGACTCTCCTGCCG  42 74
JH254_RS12185 2639025 .. 2639040 -  -5.4  -3.03124   TTGGAGGGGGCAAGA              CCGG-CA CGC TGTCCGG              TCTTGCCAGGCCGTC  48 45
JH254_RS12180 2638607 .. 2638636 - -22.3  -3.40403   CTGGCCTGAGGAGAA       TGATCAGCCCGCC CCAT GGCGGGCTGATCA        CGTGCTATGCCTGCT 100 39
JH254_RS12160 2635140 .. 2635150 -  -2.4  -3.01712   TGGCTGCCCGCAAGA                 CGGG CAG CCAG                 GGGTTATCAGGCCTT  41 32
JH254_RS12155 NONE
JH254_RS12150 2632828 .. 2632845 - -12.7  -5.50499   GCACAGGCAAAAAAA             CCAGCCC GACC GGGCTGG              TTGTGTCTCTGGGGG 100 53
        ybcJ 2632306 .. 2632320 -  -4.2  -3.14344   GACCCTCTCCATCAA               GGCC AGCTGAA GGCC               AGAGGGCGCTTGGCG  47 177
JH254_RS12135 2630195 .. 2630214 -   -15  -5.47218   GCCCACCTAAAAAAA            CAGCCGGC ATCT GCCGGCTG             TTTTTTTGACTGGCG 100 44
        trxC 2622984 .. 2622997 -  -2.4  -2.92171   GATATGGTCAAATCA               TGTG GCGACT CACA                GAGTCAAGTGAAAAT  41 77
JH254_RS12110 2621463 .. 2621480 -  -9.8  -4.82901   TCGGGGCGAGAAAAA             GCCCCG GCGATG CGGGGC              TTGGAGGGGCATTAG  91 51
JH254_RS12105 2620693 .. 2620707 - -12.8  -4.56597   TGCTCCTGTGAAAAA               CCCCGC GAT GCGGGG               TTTTTTTTCATCTGT  95 56
JH254_RS12090 2616850 .. 2616866 -  -2.2  -2.58579   GGAAGCCTGGATAAC              CCGG TGGGCAATG CCGG              CGCATTGGCTGTCAC  38 54
JH254_RS12085 2616615 .. 2616632 - -12.7  -3.58522   AGCAGCATGTTGAAA             GGCGACC CTCG GGTCGCC              TTTTTTTGCGGGCCC  81 68
        pabB NONE
JH254_RS12070 NONE
JH254_RS12065 2611249 .. 2611281 - -23.6  -3.48036   GATGATCATAACGAA      CACAGCCCGGCAGA GGAGA TCTGCCGGGCTGTG      GGAGGCGCCGAGCCA 100 71
JH254_RS12055 2606844 .. 2606860 -  -3.7   -4.1413   AATAGAGGGTGAAAA              GACGT GTCGCTT ACGTC              AACGTAATATTATTT  60 247
JH254_RS12050 NONE
JH254_RS12045 NONE
JH254_RS12040 2601721 .. 2601736 - -11.8  -5.06414   TTGGTCCAAGAAAAA              CGCGCC TGAT GGCGCG               TTTTTTTATGCCCGG 100 49
        nhaB 2599051 .. 2599074 - -13.2  -4.13945   AGCCCCATCTGAAAA          GAAAGGGGCC GAAC AGCCCCTTTC           ATGATCAGTGTGTGG  91 30
        dsbB 2598434 .. 2598450 - -13.7  -5.03405   AAGAGGAGATAAAAA              GGGAGCC GTG GGCTCCC              TTTTATGGTCGAGTG 100 46
JH254_RS12005 2594472 .. 2594485 -  -2.3  -4.68103   TGAAGGGTAACAAAA               GAGAC TCAT GACTC                ATCCGGCGAGGGCTG  65 481
JH254_RS12000 2592438 .. 2592453 - -10.4  -5.14563   CTGCCCATGAAAAAA              GGAGCC CCGA GGCTCC               TCTTTTTCTGCGTGT 100 56
JH254_RS11990 2589588 .. 2589610 - -12.7  -2.75074   TTGACTCCAACATGA          GC-GGCGGGC CTGC GCCCGCCTGC           GATGGGACTGCGAGG  74 42
JH254_RS11985 NONE
JH254_RS11980 2587468 .. 2587485 - -12.7  -4.84311   GTCCAGACAAGAAAA             GAGCGCC TTTC GGCGCTC              TTTTTATCAGGGTTT 100 109
JH254_RS11955 2581576 .. 2581595 -   -15  -3.33162   GACGGGAGGGGAGAA            GGCCAGCC CGGG GGCTGGCC             AGAGGGCGGCGTGGG  86 48
        glpA NONE
        glpB NONE
JH254_RS11940 NONE
        glpC 2576900 .. 2576940 - -19.5  -3.66165   AAACAACCAAAGGAA  TTCGCCGCCCGGGCCTCCC ATC GGGCTGCCCGGGCGGCGTC  AGGGCCTTGCCGCGC 100 142
JH254_RS11925 2567243 .. 2567281 -   -25  -2.71364   CCACCGCTCGAAGCA   GCAATAAAAAAACCTCGC CTT GCGAGGTTTTTTTATTGC   TGTGGAAAGGGGCCT 100 51
        rrtA 2563708 .. 2563739 -   -21  -2.71731   GTCATGGGCGAATGA      GC-GCAGGCCGGATC CCA GATCCGGCCTGCTGC      ATTTTGGCCGTGGGC 100 61
        ribA 2557518 .. 2557536 - -14.6  -5.15167   TATCACCAATAAAAA             CGCCTCCA ATC TGGAGGCG             TATGCTGACAAGGTG 100 50
JH254_RS11850 2555206 .. 2555238 -  -9.8  -3.22777   GGTGATAGATGAAGA     GCTCTGTACCGGCGC CGTG GTGCCGGTACCG-GC      GGACTATTATGACGG  68 32
JH254_RS11820 2548424 .. 2548449 -  -9.1  -2.76696   TCTGGCTGTAACAAG         CCAGTGAC-CTT ATG AAGAGTCACCGG         GCTTGGCAAGCGCAA  60 49
JH254_RS11815 NONE
JH254_RS11810 NONE
JH254_RS11805 2545869 .. 2545892 - -18.2  -3.65046   TCCCCATCGCAACAA          CAAGGGCGCC ATCG GGCGCCCTTG           TTGTCATGGCAGGGT 100 44
JH254_RS11785 2542439 .. 2542460 - -14.5   -4.3208   CTCGATAACGGAAAA           CGGCATGGA ATCC TCCATGCCG            TTTTTGTTTTCAGGG 100 53
        mepA NONE
JH254_RS11765 NONE
JH254_RS11760 NONE
JH254_RS11755 2538293 .. 2538309 -  -6.6  -3.05384   TGGTCTGTGATTTAA              CGTGTT CAGCC AACACG              TGCACTCTGCGCCGT  54 164
JH254_RS11750 2538065 .. 2538085 - -10.4  -5.48213   GACGCAAAAGAAAAA            CCCCAACC ATCAA GGTCGGGG            TTTACTGTTTGGCGG 100 35
JH254_RS11745 NONE
JH254_RS11740 2535234 .. 2535263 -  -8.7  -2.53263   GCGACCCCGAATGGA       GCCACACACA-TGT TGA ACAATGTGTGTGCC       ACTGACACATCAAGC  58 52
JH254_RS11735 2534666 .. 2534679 -  -2.3  -5.06816   ACCCTGCAAGAAAAA               CGTGT CAAA ACTCG                AAAACCAACCCGTGT  75 86
JH254_RS11730 2534066 .. 2534079 -  -5.9  -5.44119   CTGATGTCAAAAAAA               GGCCC CAAA GAGCC                TTGTCAGTTTTCATG  91 29
JH254_RS11725 2533086 .. 2533101 - -10.4  -5.13473   ACCAGATGCAAAAAA              CCGACC CTGA GGTCGG               TTTTTACAATTTGGC 100 157
JH254_RS11720 NONE
JH254_RS11715 2530666 .. 2530684 -   -16  -4.93877   TGGCAGGAAACAAAA             GACCCCGC ATG GCGGGGTC             TGTTTCAGGGTTGGA 100 30
JH254_RS11710 NONE
JH254_RS11705 NONE
        nuoC NONE
        nuoE NONE
        nuoF 2525494 .. 2525508 -  -2.8  -3.72695   ACCTGTTTTATGAAA               TCGG CTATTGC CCGA               TGCGTCCTGGCGCTT  53 39
        nuoG 2522730 .. 2522743 -  -2.3  -2.95774   CAGATCCATCAGAGA               GTCGC TCAT GCGAT                GACCTCCTGCAGGTT  41 17
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK NONE
        nuoL NONE
        nuoM NONE
        nuoN 2515222 .. 2515238 - -10.8  -5.71712   GCGGACATAAAAAAA              CCGGCC ACGGA GGCCGG              TTTTGCTGTGTGAGC 100 52
        mltF 2509142 .. 2509157 - -11.8  -5.66684   CAAGGCATAAAAAAA              CCCGGC TGAT GCCGGG               TTTATACTGTGTGCT 100 328
JH254_RS11530 NONE
JH254_RS11525 2487279 .. 2487295 -  -9.4  -4.72986   GATCCCCACGAAAAA              GGCCTC TTGAC GAGGCC              TTTTTGCTGTCTGGT  86 57
JH254_RS11485 2479263 .. 2479293 - -10.3  -5.65177   AGAGGGATAAAAAAA       TCCCGGCGCCGTC GCACA GACAGGGCCGGGT       CATCAAACAAGGAAT 100 296
        ahpC 2478328 .. 2478351 - -15.3   -3.9122   GAGGGCCGTAAACAA          GACCGGCCC TTGAAC GGGCCGGTC           TTCAGAGCGGGGAGG  95 42
        ahpF 2476571 .. 2476602 - -13.9  -4.79667   AAAACCTAGTAAAAA      CAATGCCAGTCAG GCTTAA CTGACTGGCATTA       ACTCCAGGGAGTCGG 100 62
JH254_RS11460 2473355 .. 2473380 - -18.3  -4.18494   CATCCGCAGTGAAAA         GGCCCCCGCCA GTGA TGGCGAGGGCC          TTGTTTCATTTTGGC 100 93
JH254_RS11450 2471811 .. 2471830 -   -15   -3.4277   AGCCAATATGCACAA            GGCCACCC CCAG GGGTGGCC             TTGTTGTGTGCGGCG  88 55
        zapA NONE
        ssrS 2462683 .. 2462701 - -11.7  -5.30616   GCAGGCAAAGAAAAA             GCCCGTC GTGAT GACGGGC             TTTTTTGGGTAGGTA 100 36
        suhB 2453260 .. 2453283 - -16.8   -5.5112   GTCAGGAATAAAAAA          TGCCAGTCGG CGAA CCGACTGGCA           TTTTTTTCGCGGGTA 100 48
         rnt 2449338 .. 2449355 -  -3.3  -5.61596   ATGTCGAGAAAAAAA             TCGGCAG ATCC CGGCCAA              GGGACGCATCTTCTG  88 150
JH254_RS11345 2447888 .. 2447905 - -12.7  -4.46073   GTGCAAGACAAGAAA             GGCGACC CCGG GGTCGCC              TTTTGTCTGTCTGCT  95 51
JH254_RS11300 2435357 .. 2435396 -  -9.2   -3.0976   CCCAACAGGGCAACA  GGGAC-AGGCGGGGCTTGC CAG GGAAGCCCCGCCTTGCGGC  TTACAACCAGCGTTT  63 26
JH254_RS11295 2433516 .. 2433532 - -13.7  -5.24129   TCGCGCCAGAAAAAA              GAGGGCC AAG GGCCCTC              TTTTGCTGCATTGCC 100 49
JH254_RS11290 2432217 .. 2432244 - -20.6  -3.88232   CTGGCGAGACAACAA        GGCGGACCCCAC GCTG GTGGGGCCCGCC         CGGTAAGGCTTTCGG 100 52
JH254_RS11285 2431098 .. 2431121 - -13.8  -2.53581   CACATCTTGAATGGA          GGAGGCCCGC CATG GCGGGCCTCT           TTGTGCCATCGTTGG  75 48
JH254_RS11275 2429036 .. 2429061 - -14.7  -4.07246   TTACGTTAAACGAAA         CGGGCCCCTTT TGCC AAGGGGGCCCG          TGCAGGTTGAAGGCT 100 63
JH254_RS11270 2428539 .. 2428558 - -10.6  -3.05463   AGTTGCGCCAGGGAA            TGGCGGCC GTTC GGCCGCCT             GAAGAGAGAGGGTCA  68 56
        asnB 2426676 .. 2426699 - -15.4  -4.32669   AATGGCAGAAAACAA          CAAAGCCCCT CGAG AGGGGCTTTG           TATTCAGGTCAGGGG 100 44
JH254_RS11260 NONE
JH254_RS11255 2425207 .. 2425220 -  -5.9  -2.70932   CGCCCCCGCCAATCA               GCCGG ATGC CCAGC                CCTGAAGCTGTGCAG  48 103
JH254_RS11220 2417920 .. 2417944 - -16.5  -3.19371   ACTCATGCAATGCAA          GAAGGCCACCC TTG GGGTAGCCTTC          CTGTTTATCGGTTTC  88 79
        prpB 2415040 .. 2415053 -  -5.2   -3.4072   CAGCCGCCAGCATAA               GGCG GCCGGT CGCC                GTCTTATTCCTTGGT  54 29
        prpC NONE
        acnD 2411078 .. 2411113 -  -4.6  -2.78032   GTGTCCTGAAAAGAG    TCATGGATCCTGCTCCC TCT GGGAGAAGGTGCC-CGA    AGGGCGGATGAGGGG  44 126
        prpF 2409789 .. 2409816 - -11.2  -5.18561   GAAACATCCAAAAAA        GAGCCCTGAGGC AGTC GCCTTGGGGCTC         TTTTCGTCTGGCTGG 100 67
JH254_RS11180 NONE
JH254_RS11175 2404130 .. 2404145 - -11.8  -5.06414   GGGCGCCAATAAAAA              CCCCGC CGAA GCGGGG               TCTTGTGCATATCAA 100 48
        yccS NONE
JH254_RS11165 2401209 .. 2401239 - -17.7  -4.59376   ATGATGAAATGAAAA      GACCGCGCCTCATG GCAA CATG-GGCGCGGTC       TTTTTTTGTGTCCAA 100 81
JH254_RS11125 2391273 .. 2391290 - -12.7  -4.93318   TACAAGCGATAAAAA             CGGGCAC CCAG GTGCCCG              TTTTTTATTGGAGGT 100 40
JH254_RS11115 2389555 .. 2389584 -  -7.1  -4.26076   CCAGGCCGAGCAAAA       CCGCCAGGCGTCCA TCA TGAACGCC-GCCGA       GAAGCAGGCCTTGGA  73 77
JH254_RS11105 NONE
JH254_RS11100 2387990 .. 2388021 -  -6.4   -2.5547   ATCTGGGAGATCAAG      CGCCACATCGGGCT CGTG AGCCCGGCGCTGCA       TCTGGACTATCGTGT  48 480
JH254_RS11085 2383252 .. 2383266 -  -4.2  -3.26428   CAACAAGGAACTCAA               CAAGCC CTG AGCCTG               CTTGCCCCGCGAGTG  49 150
JH254_RS11075 2381210 .. 2381228 - -14.6   -5.5074   GAATGGAATAAAAAA             TGCCGGTC AGT GACCGGCA             TTTTTGTTGGAGGAG 100 50
JH254_RS11015 NONE
JH254_RS11010 2366203 .. 2366224 - -11.5  -3.45231   TCAGACAGGTAAACA           CAGGGCGCC CTCG GGCGCCTTG            TTGCTATCTGGGGGG  75 125
JH254_RS10990 2358729 .. 2358746 - -12.7  -4.15833   ACGAGGACGGCAAAA             GGGCTCC CGAG GGAGCCC              TTTTCATTGCCGGTC  91 51
JH254_RS10985 2358069 .. 2358088 -  -7.8  -2.75382   GACGTCAGGCAAGGA            GGCCGC CGTGAGTT GCGGCC             TGTCTGCATCGGGCG  54 61
JH254_RS10975 NONE
JH254_RS10970 2356118 .. 2356155 - -16.3  -3.85698   CCCTCGGGTGAGAAA   GGAAAGGGGCCGGCTCC GTGA GGAATCGGCCCCTTTGC    GTTTGCCCCCTTCAG 100 37
JH254_RS10960 2353913 .. 2353930 -  -9.8  -4.08958   ATCCGCAAAGAAGAA             GCCCCG ACAGTG CGGGGC              TTGCTTGGGAAGGAT  79 40
JH254_RS10955 2352976 .. 2352991 -  -6.8  -2.78596   GATGGGGTCAGCACA              TGCCAC GCTA GCGGCA               ACCTTCTGAACCTTT  51 136
JH254_RS10950 2352703 .. 2352722 - -16.4   -5.1963   CGCAAGCAATAAAAA            GCCCCGGC AGGC GCCGGGGC             TGGGAAAGGGGTCGG 100 42
JH254_RS10815 2322860 .. 2322871 -  -3.6  -3.01712   GGGGCTGTGCCAATA                CCCA GGCC CGGG                 TCATCGCGGTGGGGG  43 138
JH254_RS10805 2318953 .. 2318967 -  -5.6   -3.4376   ACAGACCCATGATAA               GGGGAG ATG CTCCTC               ATGCGGAGCATCATT  54 77
JH254_RS10800 2317603 .. 2317621 -   -16   -4.1851   GCAAACCATAAATAA             GACCGCCC ATG GGGCGGTC             TTTTCATTTCCGTCT 100 174
        rsmD NONE
JH254_RS10740 2304381 .. 2304411 -  -9.9  -4.57569   TCAGCCTCGGAAAAA      CGCAAAAGGAGTGA CGAA TCACTCCTTCTG-G       TCGGGCCGGGGGTGG  87 42
JH254_RS10725 2302082 .. 2302099 - -12.7   -5.4505   TTGTCCAATAAAAAA             GACCGCC TGCT GGCGGTC              TTTTGCGTGATGTTT 100 47
JH254_RS10715 2300038 .. 2300057 -  -6.4  -2.70932   GCTGGTGGCCAACGA            CG-TGGGCC AGG GGCCCATCA            ACTACGTTGGCACCA  49 129
JH254_RS10695 2296739 .. 2296757 - -11.7  -3.66654   GATGTCAACGTGAAA             CGGGGCT TCTTG AGCCCCG             TTTTTTTTGCGCGTC  77 39
JH254_RS10680 2294202 .. 2294231 -  -4.2  -3.40403   GTGCGGGGAGGAGAA       CGGCGCCAAC TTCGATATCT GCTGGCGCTG        CCATCACGATCCCCA  52 66
JH254_RS10665 NONE
JH254_RS10660 2290025 .. 2290040 - -11.8   -4.7497   GGCATCCATGAAAAA              CGGGCC TTCT GGCCCG               TTTTGCTATGTGATC 100 49
JH254_RS10650 2288977 .. 2288994 - -14.1   -5.4833   TCACCCAATAAAAAA             CGGCGCC TTCG GGCGCCG              TTTTTTATGCTGGAC 100 78
JH254_RS10615 NONE
JH254_RS10610 NONE
JH254_RS10605 NONE
JH254_RS10600 2276630 .. 2276669 -  -5.9   -5.3689   ATAAATAAAACAAAA  CAACAAATAAAAGGGGT TGTTTG AGCCCTTTTTTTTATTG   AAAACAAGCCTTGTG  91 138
JH254_RS10595 2275468 .. 2275485 - -11.3   -4.6709   TAAAAGTAGACAAAA             GCCGAGA TAAA TCTCGGC              TTTGTATTGTCTGCT  95 48
JH254_RS10580 2271631 .. 2271641 -  -5.4  -4.43669   ACTGAAAAAATGAAA                 TGAC TGA GTCA                 GCCGAGAAGAATTTC  70 446
JH254_RS10565 2268119 .. 2268129 -  -5.4  -4.43669   ACTGAAAAAATGAAA                 TGAC TGA GTCA                 GCCGAGAAGAATTTC  70 446
JH254_RS10520 2256459 .. 2256484 -  -4.7  -3.14924   GAAATCATCGAAAAG         TGCGGCCACGTC TGC AACGTGGA-GCA         GCCGGATCACTTCAA  48 108
JH254_RS10505 NONE
JH254_RS10495 NONE
JH254_RS10490 2252977 .. 2252996 - -16.4  -2.63596   CGTCATTGCATACCA            CGGGGGCC ATCA GGCCCCCG             TGTCATTGTGATGAA  85 292
        argA 2250401 .. 2250413 -  -3.3  -4.30034   AAAATGGCAGGAAAA                CGCGA GGA TCCCG                GCCAGAAGCACTCCA  61 358
        lysC 2248887 .. 2248908 - -17.3  -3.45032   GAAGAAGAGTGACAA           GAGGGGCGC CGCG GCGCCCCTC            TTTGCTGAGTGGGGA  95 89
JH254_RS10465 2245142 .. 2245161 - -13.6  -4.82901   TCCCGCCCATAAAAA            GAGGTCGC CCGG GCGACCTC             TTTGTCGTCTGCTAT 100 114
JH254_RS10455 2242988 .. 2243005 - -11.3  -3.82084   TGCGAACATCAAGAA             GGAGAGG CTTG CCTCTCC              TTTTTTATGGCCGAC  80 52
JH254_RS10425 2235147 .. 2235177 - -11.9  -2.66316   TGGTGCAGCAGACCA      GCAGCACGGCGGAGG AGA CCTCCGCCGC-C-GC      AGAGGAGCTGAACGT  65 144
JH254_RS10370 2222913 .. 2222932 - -16.4  -4.25104   TCGCTGCCATGAAAA            GGCCCCGC CAAT GCGGGGCC             TTGTCGTATCGGGTC 100 48
JH254_RS10360 2220410 .. 2220429 -   -15  -4.72272   GTCTTGCAGGAAAAA            CGGCCACC CGGA GGTGGCCG             TTTGGCGTGATGCTC 100 176
JH254_RS10350 2220130 .. 2220151 - -14.5  -5.20781   GACCATAAAAGAAAA           GGCCTTGTC GTCT GACAAGGCC            TTTCTCGGGGAATTT 100 40
JH254_RS10345 NONE
JH254_RS10340 2218062 .. 2218087 - -20.5  -2.65264   CCATCAGGCATATGA         CAACGGCCCGC AGAA GCGGGCCGTTG          TCATGGGGGTCAGGG 100 45
         alr 2216142 .. 2216159 - -12.7   -4.7254   ACGGTGCAGTAAAAA             GGGCTCC CTCG GGAGCCC              TTTTTCATGTCAGCA 100 47
        adhE 2204621 .. 2204640 - -16.4  -5.76237   TAGACAAACAAAAAA            GCCCGCGC ATGT GCGCGGGC             TCTTGTCATCCGTGG 100 47
JH254_RS10285 2203291 .. 2203315 - -17.3  -2.71011   AGGTTTGTCCAATGA          GTTATCCCCAG CTT CTGGGGATAAC          TCAGAAGGCGAAATA  86 26
JH254_RS10280 NONE
        yehT NONE
JH254_RS10270 2198954 .. 2198983 - -17.9  -5.31877   AGTGACTACAAAAAA       CAGAGGCCCGGCA GCAA TGCCGGGCCTCTT        GTCATGAAGAGAAGC 100 48
JH254_RS10255 NONE
JH254_RS10250 2194578 .. 2194600 - -20.6  -2.55351   CGCGCTGACAGGAAG           CGGGCCGGCA GGA TGCCGGCCCG           TGCTGGTCAGGGAAC 100 41
JH254_RS10245 2192668 .. 2192688 -  -8.9  -3.95986   TCTAACTGAACGAAA            GGGCGGCAT CAG AAACCGCCC            CGATAATCTAACCGG  73 70
        dacB 2191182 .. 2191205 - -16.8  -2.71263   AAGGCCGGGGAATGA          GGCTGCCTTG CCGG CAAGGCAGCC           CGTCTATCACTGCTC  85 32
JH254_RS10235 2190708 .. 2190722 - -12.8  -5.21709   GGCGACATGAAAAAA               GGCGCC AGA GGCGCC               TTTTTTCATGGTGTC 100 46
JH254_RS10225 2188871 .. 2188886 - -10.4  -5.27206   GACAGACAACAAAAA              GGCTCC CGCG GGAGCC               TTTTTCATGAGCCTT 100 43
JH254_RS10210 2184887 .. 2184897 -    -4  -3.58564   ATATGAGTAAATTAA                 CAAT AGC ATTG                 CGTCCTGATGAGTCG  52 437
JH254_RS10205 2183484 .. 2183515 - -24.6  -3.25823   GTGGGCGGACAGCAA      TGACAACGGGGGGC TTGG GCCCCCCGTTGTCA       TTGGCAGCTGTCGCT 100 40
        rsxA NONE
        rsxB NONE
        rsxC NONE
        rsxD NONE
        rsxG NONE
JH254_RS10165 NONE
         nth 2175371 .. 2175418 -  -9.8  -2.52543   ACTGCCTTGAATCCA TGGCCCGAGACCGGATCCGCAG AGGC CTGCAGATCAACTCTCGGGATA GACCTTCTCTTTGTA  62 11
        gloA 2174872 .. 2174888 - -15.1  -4.43477   CGCAGCCAATGAAAA              CGGGGCC CTG GGCCCCG              TTGTTTTTCTGACCG 100 56
JH254_RS10145 2171811 .. 2171828 -  -6.9    -4.371   GGGATGATAGCAAAA             CTTGGCG GTGG CGCCGAG              CATTCCTATGGGGCT  74 190
        mtnN 2171065 .. 2171078 -  -3.1  -2.78384   GGGGCGTCGATCACA               GCTTGC CGA GCA-GC               GCGATGATCACTTCG  41 7
JH254_RS10135 NONE
JH254_RS10130 2169083 .. 2169095 -  -7.7  -3.40522   ACTCCGCCAGCATAA                CGCAA AAT TTGCG                ACTGTATTGGAGCAA  60 187
        metG 2163143 .. 2163161 - -14.6  -5.84432   CACAAGATAAAAAAA             GAGAGGCC ATT GGCCTCTC             TTTTCATTGGGACTG 100 57
JH254_RS10085 2160550 .. 2160578 - -14.6  -2.87132   CGCCTGGCCCAGACA        TGGCAGGCCATC TGGAG GATGGCCTGCCG        GAGGGGGTCAGATCC  79 33
JH254_RS10080 2159121 .. 2159139 - -10.2  -5.60993   GGCCTCATAAAAAAA             GCCCGCTA CGA TCGCGGGC             TTCTTGATGGCTTGC 100 94
        selD NONE
        mnmH NONE
JH254_RS10055 2153246 .. 2153304 - -10.1  -4.00038   CACCACCACGAGAAA TGGGACGGCTCGGGCTATCCCGCCGGCG AGAC CGGCGAGGGGATC-CCCGAGGCGTCGCG GATAGTGGCCATCGC  78 230
JH254_RS10015 2140342 .. 2140363 - -14.5   -4.8543   CAATTCTGATAAAAA           CAAAGCGCC TGAT GGCGCTTTG            TTTTTTTATGGGCCC 100 44
JH254_RS10005 2138332 .. 2138365 - -17.7   -4.6902   TGAGAAGGGGAAAAA     TG-AAAAGGCCAGAGC CAA GCTCTGGCCTTTTGCA     TGTCGGCACCCCCGG 100 58
        dusC 2132972 .. 2132992 - -13.9  -2.78816   TGAGCCTTCATCATA            GGGCGCCGC GGG GCGGCGGCC            AAGTCTAGGCCTGTG  76 30
JH254_RS09975 NONE
JH254_RS09970 2131016 .. 2131031 -  -4.7  -4.58663   AGCAGCCCCCAAAAA              CGAGT GATAAA ACTCG               GCCAGTATAGGGAAA  71 67
JH254_RS09965 2130485 .. 2130503 - -14.6  -3.44527   TACGCAGTACGAGAA             GGGGAGTC CAT GACTCCCC             TTTTTCATGCCTGTG  85 145
        hisG NONE
        hisD NONE
        hisC NONE
        hisB 2118120 .. 2118134 -  -4.9  -2.66316   TTCCCCATCACAGCA               CCCCC TTGCT GGAGG               GAAGCTCGCTCCCTT  43 3
        hisH NONE
        hisA 2116693 .. 2116712 -   -15  -2.71125   ATCGGGGAGAAAGAG            GCCTGCCC GGAT GGGCAGGC             TGTCTGATGCCGGAA  80 50
JH254_RS09895 NONE
JH254_RS09890 NONE
JH254_RS09885 2109321 .. 2109344 -  -3.8  -3.98826   CCATGAAGGGAGAAA          CGACA-GGCCC GGC AGGCCGTCTCG          TCGCCTCTGGGCACC  58 62
        hisF NONE
JH254_RS09875 2107761 .. 2107777 - -15.1  -4.12225   AATCATGAAATGAAA              CGGGCCC ACA GGGCCCG              TTTTGTTGAACAGAA 100 49
        tnpA 2103584 .. 2103594 -  -2.4  -3.71917   ATCTTAAATGCGAAA                 GGGG ACT CCCT                 CCGACGTAGGTGGGA  51 60
JH254_RS09840 2102089 .. 2102123 - -20.2  -3.01712   GTTGGGTTGCGAAGA     TGAAAAAGGCCCACCA TCG TGGTGGGCCTTCCTCA     TGGCAGGGCGCTCCT 100 50
JH254_RS09830 2096974 .. 2096995 - -10.8  -3.60971   ATGTCAATCCTGAAA           CGGGCGCC GCAAGA GGCGCCCA            CACAATCCAAGAGGG  74 89
JH254_RS09825 NONE
JH254_RS09820 NONE
JH254_RS09815 2093836 .. 2093853 - -14.1  -5.52096   AAAGGGAATAAAAAA             GGGCGGC CTTG GCCGCCC              TGTTTATTGATGGGG 100 29
JH254_RS09785 NONE
JH254_RS09780 2086108 .. 2086120 -  -6.9  -3.63744   TCCCCCCTCAAAACA                GACGG CAT CCGCC                CTCCTGCCACTGGCG  60 5
JH254_RS09775 NONE
JH254_RS09770 NONE
JH254_RS09765 NONE
JH254_RS09760 NONE
JH254_RS09755 NONE
JH254_RS09750 2080147 .. 2080173 - -12.4  -3.14564   GGATGTGGGGATGAA         CAGGCAGACA ATGAGGA TGTCTGCCTG         TGATGTGGCTGAGGC  74 71
JH254_RS09745 2078458 .. 2078475 -  -9.1  -5.60993   CCTGGCATAAAAAAA             GAGCGCC CTGG AGCGCTC              TCTTTGATGGCGATG 100 44
JH254_RS09740 NONE
JH254_RS09735 2075600 .. 2075630 - -18.5  -2.78384   TGCGGGTTGATGACA       TGACAACGTCCCT TCAAG AGGGACGTTGTCA       TGTCTGGCGGGAGTG  93 23
JH254_RS09725 2073788 .. 2073810 - -17.8  -3.42996   CACGATGCATGACAA           GAGGGAGGCT TCA AGCCTCCCTC           TTTCATTTGTGTCTA  95 84
JH254_RS09715 2071918 .. 2071954 -  -8.6  -2.87132   TGGGCGCGGGAGAGA   CGCGCCATGGGGGAGCC GCTC GGCATCCC-ATGGCGCC    CGTGATACATCAGTC  57 35
JH254_RS09710 2070373 .. 2070391 - -14.6  -5.40072   CGTTTTGCAAAAAAA             TACCCGGC GAT GCCGGGTA             TTCGAGTGCCATATG 100 59
JH254_RS09705 2068727 .. 2068743 -  -9.4  -6.15828   GCGACCAAAAAAAAA              GCGGGA ATATA TCCCGC              TTTTTTCATGTCATC 100 52
        minC NONE
        minD NONE
        minE 2065374 .. 2065396 - -13.5   -5.1675   CCAGGCATTAAAAAA           CCGGATCCT GGGAA AGGATCCGG           TCTTCATTGGGGGAA 100 64
JH254_RS09675 NONE
        mtgA 2064001 .. 2064018 -  -9.8  -3.11326   GATAAGGTTAACAGA             GCCGCC AGCAGG GGCGGC              GTGACGGGGCGGCCT  66 174
JH254_RS09665 2063539 .. 2063553 - -12.8  -5.25735   GCAAAAAACGAAAAA               GGCGCC TGG GGCGCC               TTTTCTTATGCCTGT 100 31
JH254_RS09645 2060957 .. 2060978 - -15.9  -5.04601   GCCAGAAAGCAAAAA           GGCCTTCCC GATA GGGAAGGCC            TTTCAATTTAGTGGC 100 37
JH254_RS09640 NONE
JH254_RS09635 2058845 .. 2058868 - -11.2  -5.73339   ATAAGCATAAAAAAA          GGTCTTTTAT ATAA ATAAAAGACC           TAAAAGACGGAGCGG 100 125
        cysT NONE
        cysW NONE
JH254_RS09620 2055847 .. 2055865 -  -2.2  -2.89921   AGCAAGCCTGACAGA             GGGCCGCA CCT CGCGGCTT             GCCCTCAGATCTGGT  41 30
         cbl 2054765 .. 2054785 - -18.3  -4.56883   TCAACATCAAACAAA            CGGGGAGCC CAT GGCTCCCCG            TTTTTCATCCATCCC 100 46
JH254_RS09600 2049032 .. 2049049 - -12.7  -4.80959   CAACGCACAAGAAAA             GAGCCCC TGAT GGGGCTC              TTTTGACGGTGCAAC 100 48
JH254_RS09595 2048155 .. 2048185 - -13.4  -3.85817   ATGGTCTGCGACAAA      TGC-AACGCCCGC ATGAGA GCGGGCGTTGGCA       GACAGGATCAGGGCT  88 33
JH254_RS09590 2047318 .. 2047361 -  -3.9  -4.17132   AAACGGTTGAAGAAA GTGATCA-GAGCCAGCAG CCCTATCAT CAGCCAGCCCATGATCAC CTCCTCATCCGGTGC  60 22
JH254_RS09585 2046970 .. 2046998 -  -8.1  -3.05343   GTGACATTCCCAACA        GGGCGGATATCCC ATC AAGACATCCGCCA        TGCAGGATCACGGCA  60 47
JH254_RS09580 2045316 .. 2045334 -  -4.4   -3.4252   GTCCACGCAGGAGAA             GGGCAGCC AGC GGCTCACC             ATCGCCCTGAGCTCG  52 62
JH254_RS09575 NONE
JH254_RS09570 2044025 .. 2044046 -  -2.9  -4.09685   CTGGACGCCCCAAAA           TGATGCCTG GTGG CAGGACTCA            GGGCTTCTTGGTATA  58 23
        bcsG NONE
JH254_RS09550 NONE
JH254_RS09545 NONE
        bcsA NONE
        bcsB NONE
        bcsZ NONE
        bcsC 2029543 .. 2029567 -  -9.9   -3.9392   TCCTATCTGAAATAA          GGGCGCCCG GTGATGA CGGGCGCCT          CTGTCAGTCGAAGTC  77 29
        dmeF 2028092 .. 2028106 -  -3.4  -3.14132   GTGTGTGGCGAGGAA               GGCAAG GTT CACGCC               AGCCTGGGCTTTCAT  44 173
         tpx 2020085 .. 2020114 - -21.5  -5.08601   GGAGCGCAATAAAAA       CGGCCTGCCCCGT GTGA ACGGGGCAGGCCA        TCAGGCAATCAGCCT 100 51
JH254_RS09490 2018344 .. 2018364 -  -6.7   -2.8779   ATAAGCGACATGATA            GGGGCGCTG CAA CAGAGCACC            CGGCAACTGTCCGAT  51 434
JH254_RS09470 2014048 .. 2014065 -  -3.4  -2.89094   AACAAATATCAACCA             GACCCT TTGTGC AGGATC              CCTCAACCCGCCGTT  42 28
JH254_RS09465 2013381 .. 2013398 -  -9.1  -3.67296   GAGCAGGGACTGAAA             CTGGCGGC CAA GCCGCC-G             ATGGCGCTCCAGAAG  68 181
JH254_RS09455 2012252 .. 2012265 -  -3.1  -2.68202   CCTAGAGTAAAAAGC               TGAAC AAGC GTCCA                TAAATGTCAGTGCTT  40 32
JH254_RS09450 2011556 .. 2011567 -  -5.8  -3.47573   TCAGGGAGATCAGAA                GGTG AATT CACC                 ACCGATGAACCAGCC  56 8
JH254_RS09445 2010789 .. 2010806 - -14.1  -4.91873   CACATCAATGAAAAA             GCGCGCC AAAT GGCGCGC              TTTTTTTTCCTTGTC 100 70
        ruvA NONE
        ruvB NONE
JH254_RS09415 2003578 .. 2003591 -  -3.1  -4.78764   TAAACCCAGTAAAAA               CACAT GTTT ATGCG                GATTGGCACTCCTAC  70 209
JH254_RS09410 NONE
        cydB NONE
        cydX 2000204 .. 2000248 - -11.4  -2.83715   GCCAGCAGCATCAGA CCTTGCCATGGCTGG-CGCTCC AGA GGAGCGGCCAGCCG-GGCGAGC CTGTCACTTGTCTTC  69 29
JH254_RS09395 1999916 .. 1999951 - -16.2  -5.00884   ACGCCCCTCAAAAAA    GAAGAAGGAGGTGGGC TGAT GCCGACCTCCTTCATC     ATTTATGGCAGGTAG 100 28
        ybgC NONE
        tolQ NONE
        tolR NONE
        tolA 1996974 .. 1996988 -  -4.3  -2.82895   TCTCTGATCAACAAC               CTTTG CCAAT CAAAG               CAGAAACACTCTCTT  44 39
        tolB NONE
         pal 1994974 .. 1994991 - -11.3  -4.88918   TTAGTGCAAATAAAA             CGGCCAT CGAA ATGGCCG              CTTGCATATAAACGA 100 60
        ybgF 1994041 .. 1994064 -  -5.3  -4.26344   AGAGTGTTACGAAAA          CAGTGACAT GCAGCA ATGTCACAG           CTTGGCCAGACTCTG  67 20
JH254_RS09355 1993785 .. 1993808 -  -3.3  -3.03619   AACGACCTGGGAATA          TTGTCTTCAC CTGCT GTGAAGA-AA          TGGTGGGTCGTGCTG  42 26
JH254_RS09350 1993674 .. 1993686 -  -6.2  -3.15579   TGAACCTTTCACCAA                CCGC ATGTG GCGG                CCAGCATTACAACAT  52 40
JH254_RS09345 NONE
JH254_RS09340 1993455 .. 1993467 -  -6.2  -3.15579   TGAACCTTTCACCAA                CCGC ATGTG GCGG                CCAGTGTTACAACAT  52 40
JH254_RS09335 NONE
JH254_RS09330 NONE
JH254_RS09325 NONE
JH254_RS09320 NONE
JH254_RS09315 NONE
JH254_RS09310 NONE
JH254_RS09305 NONE
JH254_RS09300 NONE
JH254_RS09295 1992565 .. 1992575 -  -3.2  -2.94322   AGCTGAGCTAAACGA                 CCTG GGA CAAG                 GCTTAAATGATGGTG  42 36
JH254_RS09290 1992464 .. 1992481 - -12.7  -5.00138   GACGGAAACGAAAAA             GCCCGCA TCGC TGCGGGC              TTTTCAATATGGTGG 100 35
        nadA 1989082 .. 1989103 - -15.9  -4.15066   GACGGATAAATTAAA           GAGGGCTCC CGCG GGAGCCCTC            TTTGCATCTTGCCAT 100 50
        malQ 1984502 .. 1984527 - -19.1  -3.03124   TTTGATGGCTGAACA         TCCGCTTCGGC CGAA GCCGAAGCGGA          TGAAAGTGAGTCACA  95 57
        glgB 1982300 .. 1982310 -  -6.8  -2.62613   TTCCATTTCAAACAT                 CAGG ACT CCTG                 TTTGATGAACAAGGT  50 14
        glgX NONE
        msrB 1979677 .. 1979702 - -21.9  -5.36441   GGGGGAGATAAAAAA         GCGGCGCCTCC GAAG GGAGGCGCCGC          TGGTCGTGTCGGGGA 100 41
JH254_RS09225 NONE
JH254_RS09220 1974835 .. 1974850 - -11.8  -5.42862   AGATCGCGAAAAAAA              CCGGCC CCAT GGCCGG               TCATGTCATTTTATG 100 55
JH254_RS09215 1974309 .. 1974335 - -11.7  -4.30576   CGGGGAGCACCAAAA        GCAAGAGGAGGC CAGG GCCTCCTCTT-C         TTGTCTCTGCTATCA  89 104
JH254_RS09200 1971434 .. 1971460 -  -2.2  -3.05384   GGCGCCGCGATGCAA        GTCCGGC-CCG CCACCC CGTCGCCGAAC         TGTGATCCCCGCGCC  42 46
JH254_RS09195 1970375 .. 1970391 - -10.8  -4.85599   GGGAGCTGACAAAAA              GGGGCC GACAT GGCCCC              TTTCTGTTTATGCCG 100 57
JH254_RS09185 1968719 .. 1968738 - -10.7  -5.54907   GCCACAAAATAAAAA            CCGGAGC GGGGAT GCTCCGG             TTTGTTGTCTGCCCG 100 53
JH254_RS09180 1966901 .. 1966918 - -10.5   -5.4505   CGCCGCAACAAAAAA             GGCCGCC TGAG GGCGACC              TTTGCAATGAACAGT 100 350
JH254_RS09175 1965083 .. 1965098 -  -8.2  -2.87132   GGCCGGTGGCACAGA              CCCCGC TGCT GCAGGG               GCTCATTTTGCAGGT  55 444
JH254_RS09155 1961131 .. 1961142 -  -2.2   -2.9155   GCTGTTAATACCAGA                GCAT CACC ACGC                 ACAGGGCGGTCAAGG  41 3
JH254_RS09150 1960380 .. 1960393 -  -9.5   -5.4505   CCCGGCAATAAAAAA               GGCCC CGAA GGGCC                AACAAGACAGCCGGT 100 59
JH254_RS09145 1959560 .. 1959591 - -22.3   -5.5943   AAAGGAGGAAAAAAA      CAGGCGGGGCGCC GAGAGG GGCGCCCCGCCCG       CATCACATCAGGCAA 100 33
JH254_RS09140 1958126 .. 1958142 - -13.7   -4.8048   GCCTGATATGAAAAA              GCCGCTC ATG GAGCGGC              TTTTTGCTGGGCGTC 100 47
JH254_RS09130 1955521 .. 1955545 -  -5.6  -3.28924   GACTTCGGCTGACAA         CCCGCAG-CAG ACCG CCGTCAGCGGG          CGCCCCCTCTGACCT  52 69
JH254_RS09115 NONE
        viaA 1951134 .. 1951157 -  -7.4  -3.36289   GAGCAGGTCAACGAA          CG-GGGCCTCT ACC ACAGGCCCACG          CTCTGAGCCTGAGCG  59 44
JH254_RS09100 1948033 .. 1948056 -  -5.2  -4.58773   CGGATCAAAGCAAAA          TTGCGCGG CATTATAC CCGCGCGA           GTGAAAAATACCCAG  73 70
        prfC 1946209 .. 1946224 - -11.8  -5.55769   CCCCATAACAAAAAA              CCCCGC CGAA GCGGGG               TCTCTCTGGTCATCA 100 68
JH254_RS09090 NONE
JH254_RS09085 1945232 .. 1945242 -  -6.8  -2.76261   ACAGTGACACATAAC                 GCCT GTC AGGC                 TCCAACCCGCTGGGT  51 20
JH254_RS09065 1941664 .. 1941693 - -19.5  -3.15544   GGGCATTCCCAGTAA       CAACAAAGGCTCC CGCG GGAGCCTTTGTTG        TTTACATCTTCGCCA 100 41
        aguA 1939219 .. 1939233 - -11.4   -4.6955   CATCAAGAGATAAAA               CCCCAC GGC GTGGGG               TTTTGAATACTAACT 100 196
JH254_RS09050 1937147 .. 1937157 -  -2.4  -3.71917   ATCTTAAATGCGAAA                 GGGG ACT CCCT                 CCGACGTAGGTGGGA  51 287
JH254_RS09040 1935918 .. 1935931 -  -9.5  -4.37527   TGACAACCATTAAAA               CCGCC TGAT GGCGG                TTTTTTCATTACTGC  84 6
JH254_RS09030 1933455 .. 1933482 -  -3.4  -4.07568   TCCTTGTCTTGAAAA        TGTCAGGGCG AGCATAGG CATCCTGACA         ACTAAATTCACGACA  58 162
JH254_RS09020 1931394 .. 1931425 -  -7.3  -2.83905   CGACAACTGACCATA     CCGGG-GCCTTA-CC GCGA GGCTGAGGCTCCCGG      AGCGGGAAAATCCCC  54 97
JH254_RS09015 NONE
JH254_RS09010 NONE
JH254_RS09005 1930133 .. 1930152 - -10.7  -5.63504   AACGCCATAAAAAAA            CCACCGC CAGCTT GCGGTGG             TTTTTTCTTGGCGCC 100 50
        prmB NONE
        aroC 1927398 .. 1927415 - -12.7  -4.88129   AAAAACCATGAAAAA             GGCGACC CTGG GGTCGCC              TTGTGGTGTCTGGTG 100 66
JH254_RS08980 1924778 .. 1924798 - -18.3  -5.67967   ACCAGGACAAAAAAA            GCCCCGCCA GAT TGGCGGGGC            TTTTTGTATCAACCG 100 71
        fruB NONE
        pfkB NONE
        fruA 1916437 .. 1916454 - -14.1  -4.44667   CCCCTCAACAAGAAA             GGCGGCC CCAG GGCCGCC              TTGTCATGAAGGGTG 100 59
        mltA 1914771 .. 1914792 - -17.3  -5.00895   GTCACGAGACAAAAA           GCCGCCGGA TTGC TCCGGCGGC            TTTTTTCATGGGGAT 100 85
        gyrA 1905891 .. 1905911 - -12.6  -5.61596   AGGCGGACAAAAAAA            GAGCGACC ATCAA GGTCGCTC            TTTTGCACCGGACAA 100 51
JH254_RS08900 1905243 .. 1905254 -  -5.8  -3.86015   TATCCCGGCCAGAAA                GAGG CGAT CCTC                 AACCAGCTGCGGGCG  62 230
JH254_RS08890 1903285 .. 1903303 -  -7.4  -3.35438   TATCAGACGCGACAA             CCCAGACA AGC TGTCTTGG             CGATTTTGCATACCG  59 355
        thrS NONE
        infC 1900556 .. 1900566 -  -6.8  -4.79352   TGAGTGACAACAAAA                 TCGC AAG GCGA                 ACCGACTCATGGGGC  79 70
        rpmI NONE
        rplT 1899916 .. 1899931 - -10.4  -5.52023   ATGAGCAACAAAAAA              GGAGGC CTAA GCCTCC               TTTATTTTTATAACA 100 49
        pheS NONE
        pheT 1896269 .. 1896279 -  -3.2    -3.322   AGCGCCATAGATCAA                 TCCC TCA AGGA                 TGCATTCAACTCTTC  46 11
        ihfA 1895941 .. 1895958 - -12.7   -4.2803   CATCGGAACGGAAAA             GCCAGGC GATT GCCTGGC              TTTTTGTCACTCGTT  93 32
JH254_RS08845 NONE
JH254_RS08840 NONE
JH254_RS08835 1890098 .. 1890112 -  -4.2  -3.19117   AGCACAGGAGCAAGA               GGCG GCCCATT CGCC               CTTGGTCTTAGGCCG  47 33
        cobB NONE
JH254_RS08825 1888610 .. 1888638 -  -7.3  -2.75803   AGAACATGTCAACGA        GCTGCTCGTGCCG ACT CTGCAGCAGCAGC        CCCCAGAGGGACGAG  54 96
JH254_RS08780 NONE
JH254_RS08775 1878414 .. 1878430 - -13.7  -4.55287   GTCACCCACAGAAAA              GGAGCGC CAG GCGCTCC              TTTTTTCATTCTGGC  95 60
JH254_RS08715 NONE
JH254_RS08710 1866844 .. 1866863 -  -3.4  -2.98823   TGGCTTTCATATAGA            CGCACGGG CATG CCCGAACA             CAACAAAGGCCCCAT  42 83
        proQ NONE
         prc 1864113 .. 1864130 - -12.7  -4.68908   TTCAGGCAAAAGAAA             GGGCGAC CCGA GTCGCCC              TTGTCATTTCGTTGC 100 46
        pepN 1861356 .. 1861384 - -18.9   -4.7497   GTCATCCATGAAAAA        CGGGCAGGAGAGC CAG ACTCCCCTGCCCG        CCGTCGTGACGCTTA 100 38
JH254_RS08690 1861001 .. 1861019 - -10.4  -3.85698   TTGGGTTGTGATAAA             TTTTGCCA AGT TGGCAAAA             TTCAGAAAATCGCAC  77 114
JH254_RS08685 1855942 .. 1855962 - -15.4  -5.40072   TGCTCCTTAAAAAAA            GCCCCGGC AACTG GCCGGGGC            TTTTGGGGTTATGCC 100 34
        pyrD 1854846 .. 1854858 -  -2.6  -3.05384   GGTGCCCTTATCTAA                GCCG TCCCT CGAC                TTTATTCCATGTCGA  42 80
JH254_RS08675 1854163 .. 1854177 -  -7.8  -4.42386   GGGCCAGGCAGAAAA               CGGTCG TGA CGACCA               GACGAAGGAGAAAAT  77 139
       rlmKL NONE
JH254_RS08665 1851537 .. 1851562 -  -8.3  -5.14563   TTGCTTATGAAAAAA         CGGGCGGCAG CGTGAGT CTGCC-CCCG         TTTTGTCGTCAAATC  90 45
JH254_RS08660 NONE
JH254_RS08655 1847812 .. 1847834 - -11.3   -5.7946   CGTGGAACAAAAAAA           GCGACCAGT TTTTC ACCGGTCGC           CTTCATCTTTACCCC 100 132
         rmf 1847551 .. 1847567 - -13.7  -3.79787   GCAGAGCAACGTAAA              GGGGCCA CGA TGGCCCC              TTTCCTTTTGTAATG  88 62
JH254_RS08625 NONE
JH254_RS08620 1841369 .. 1841383 -  -2.7  -2.80016   ACAAAAAACATTAAC               GGGCC GCCTT GTCCC               ACAACAGGCGGGTAT  41 6
JH254_RS08615 1838722 .. 1838736 -  -8.5    -5.626   GAGGCCATAAAAAAA               CCGGC ACAAG GCCGG               TTTTTGACGAGCAGG  95 49
        rsmF 1837011 .. 1837037 - -11.6  -5.82172   AGGAAGACAAAAAAA         GCCAGGTACGAA TTC CTTGTACCTGGC         ATAGGGGAATTGGCT 100 188
         maf 1823147 .. 1823184 - -25.9  -3.31144   CTGCCACGCTGACAA   CCATGAAAAACGGGAGC CAAG GCTCCCGTTTTTCATGG    CAGAGTTCTTGTTAT 100 37
         rne 1818615 .. 1818635 - -15.5  -5.82281   AAAGAGACAAAAAAA            GAGCCACAC GAT GTGTGGCTC            TTTATTCAGACTAAC 100 49
JH254_RS08505 1814806 .. 1814821 -  -7.6  -4.26903   CTGACTTCATTAAAA              TCAGTG GTTT CACTGA               GGAAGAACTATTAGG  74 475
JH254_RS08495 1813456 .. 1813467 -  -4.4  -4.12942   GCAAAGGCGCCAAAA                TGGA TATG TCCA                 GAAACGTGTTTCTAG  61 230
JH254_RS08415 NONE
JH254_RS08410 NONE
JH254_RS08405 1792946 .. 1792958 -  -4.8  -2.82015   GTTATATTGACCACA                GCTG GCGAT CAGC                AGGTGCTTGATGGGG  44 51
JH254_RS08400 NONE
JH254_RS08395 NONE
JH254_RS08390 1789439 .. 1789450 -  -7.2  -4.15006   ATATCCACTGGAAAA                CCGG GATA CCGG                 GGGCGAGATACCCCC  71 49
JH254_RS08385 1785879 .. 1785889 -  -4.6  -2.91735   TCAACATGGCAGACA                 CGGC AGT ACCG                 GTTGTACTGGTGAAA  46 432
JH254_RS08380 1784600 .. 1784615 -  -6.8  -4.84918   GGCAGAAACACAAAA              GGCACC CGAG AGTGCC               TTTTTCGTGACAGCG  84 55
JH254_RS08365 1781459 .. 1781476 - -11.3  -4.67563   CAACACAAATGAAAA             TGGCAGC CGAA GCTGCCA              TTTTGCATTGTGCCG  95 46
JH254_RS08355 NONE
JH254_RS08350 NONE
JH254_RS08345 NONE
JH254_RS08340 1775941 .. 1775957 - -10.8  -5.14563   GCGGTCATGAAAAAA              GCCGGC ACTGG GCCGGC              TTGGATGCGTGGGAT 100 46
JH254_RS08335 1774127 .. 1774145 - -13.1  -5.64274   GCAGGCATAAAAAAA             CCGGCGC ACGAG GCGCCGG             TTCTGATCGCTTTGC 100 55
JH254_RS08300 1764617 .. 1764636 - -13.6   -4.8622   TGGGGCAATGAAAAA            GGGCAGAC CCTA GTCTGCCC             TTTTTTCCACCCGCA 100 62
        yfbR 1763887 .. 1763902 - -11.8  -3.89822   CATGGATGTGATAAA              GGGCCC TGCG GGGCCC               TTTTTATTGTCACTC  85 121
JH254_RS08275 NONE
         mfd 1756428 .. 1756447 -   -15  -3.95584   TTGCCAGCAACGAAA            CGGGAGCC CTGG GGCTCCCG             TTGTTATAGGCGGCA  95 71
JH254_RS08255 1752900 .. 1752918 - -12.4  -5.67967   AGTAGGATAAAAAAA             GACCGCCC TCG AGGCGGTC             TTTTTGGTTCGGTGC 100 47
JH254_RS08235 1747593 .. 1747608 -    -6  -2.50492   GAGCAGCAGCAACAG              CCGCCG TTCT CGGTGG               GGGAGATGGAGGTGC  45 456
JH254_RS08220 NONE
JH254_RS08215 NONE
JH254_RS08210 1743615 .. 1743640 - -16.9   -4.1899   GCAGGGCATGGAAAA         CAGTGCCACCG GTGT CGGCGGCACTG          ATGCAAAGCCTGGTG 100 64
JH254_RS08205 1742489 .. 1742500 -  -2.2  -2.57132   CTTGGGTGCGACAAG                GTCA TGTG CGAC                 AAATAGATACCCCAC  38 15
JH254_RS08200 1741509 .. 1741530 - -14.5  -2.87564   CCACTCCCCCAGATA           TAGCCGGAC GATT GTCCGGCTA            TATCTGATGGTATGT  79 106
JH254_RS08160 1728403 .. 1728421 -  -3.1  -3.00946   GGGCGGGAGAAACGA             TGGGG GTCATCTTA CCCCA             GTTGCGCCCATCTGC  42 72
        xseA 1726968 .. 1726994 - -13.6  -3.07876   GGAGCACAGAAAGGA         GGTGGGGGCCTG GTG CAGGCCCCCGCT         TTTTGTCAGCGGTTG  78 31
        pspF 1714420 .. 1714442 -  -6.9  -4.03413   ATGTTTTCAGACAAA          GTTGCCCGCC AGGG GGCGGGCG-C           GTTGCGGGGGGCGGC  68 109
        sapA NONE
JH254_RS08080 NONE
JH254_RS08075 NONE
JH254_RS08070 NONE
JH254_RS08065 1708832 .. 1708853 -  -7.9  -3.69354   TGGCACAAGGGGAAA           CGCGCCGCGG GAT CAGCGGCG-G           TATTCGTTGTTGTAG  63 16
        ascF NONE
JH254_RS08045 1703608 .. 1703629 - -15.9  -5.14965   AGCGTGATGAAAAAA           GATGGGGGC CTAG GCCCCCATC            TTGTATTCGTGCACT 100 75
         ald 1693198 .. 1693214 - -11.5  -5.64274   GCAGGCATAAAAAAA              CCGCCCA TCG CGGGCGG              ATTTTCACTCATCTA 100 62
        trxB 1692080 .. 1692101 - -15.9   -5.4505   CCTTGCAATAAAAAA           GGGCATGCC AACT GGCATGCCC            TTTATATCCTTCCGA 100 41
JH254_RS07995 1690634 .. 1690650 -  -5.1  -3.14881   GAACGGGCTCATCAA              CGTGATC CAG GATTACG              ATCCGGCCATGGTCT  48 192
         aat NONE
JH254_RS07980 NONE
        infA 1688498 .. 1688517 - -11.4  -5.42265   GGAAATGACAAAAAA            CCCCAACC GAGA GGCTGGGG             TTTCTTGCTGAATTC 100 46
        cspD 1685345 .. 1685366 - -15.9  -5.00616   CCTGTCCGTAAAAAA           GCGGCATCC CTTG GGATGCCGC            TTTTTAATTTATCCA 100 50
        sugE 1683030 .. 1683042 -  -5.5  -3.93256   GACACCCTCAAAGAA                GGGCT GCC AACCC                AGGAGGCACCGGCTC  62 484
JH254_RS07940 1680469 .. 1680490 - -15.9   -3.8637   GTAGACCATAAAACA           GAAGGGGCC ATAA GGCCCCTTC            GTCACACTAGCATAT 100 40
        focA 1679253 .. 1679297 -  -5.9  -2.52896   TTACCTCTCAAGGTA TTTATGTGTCTGCCGCCATC CTTAAT GATGGCGACGGA-AGATAAA CCAGTAAGTCAGCCC  48 2
        pflB 1676911 .. 1676928 - -14.1  -5.65177   ACAGCCATAAAAAAA             CCGGCGC CTGG GCGCCGG              TTTTGTTTCACCGAG 100 47
JH254_RS07875 1663726 .. 1663742 - -13.7  -5.02323   CCAGCACAAACAAAA              GCCGGGA GGG TCCCGGC              TTTTTGTTTTGACCC 100 84
JH254_RS07865 1661877 .. 1661899 - -20.6  -3.69323   GTACCATGATGTAAA           GAGGCCCCGC CGT GCGGGGCCTC           GTCGTTCATGGCTCG 100 31
JH254_RS07855 NONE
JH254_RS07850 1658422 .. 1658456 -  -3.5  -2.89475   TATGTATACATGAGA    GCTCCTG-GCTACACA TAAG CGAGCAGCACATGAGC     CTTGGAAGCGGCCTC  44 64
        xthA 1657379 .. 1657397 - -17.4   -3.7732   TTGGCAGACGAAGAA             GCCCCCGC GTG GCGGGGGC             TCAGGGTCAGGAGTG 100 64
JH254_RS07840 1656667 .. 1656699 -    -4  -3.53012   GGGTTGGGCGGCAAA     CGGAGCA-CTGCCGA CGAG TCGGCCGGTGCACGG      CACTTGTTGCAATGG  50 76
JH254_RS07835 NONE
JH254_RS07830 NONE
JH254_RS07825 1651273 .. 1651291 -   -16  -4.86822   AAGCAGACAACAAAA             CGGCGGGT TCA ACCCGCCG             TTTTTTTACTGCCCT 100 50
JH254_RS07810 1645468 .. 1645487 -   -15   -3.4404   AGTCAGAGGTAAACA            CAGGGGGC CAAT GCCCCCTG             TTTTCGGGTATCACA  88 36
JH254_RS07780 1639743 .. 1639758 -  -6.8  -2.78384   CTCCGCTCTATTACA              CGGCTC CTGT GAGCCA               ATATGTCCGCCTGCC  51 40
JH254_RS07775 1638400 .. 1638436 - -18.1  -4.04355   AAAAAAGAGATGAAA    GCGCCGGTGAAGGGA GCCCTCT TCCCTTCACCGGCGG    GCCCTTGGGGGGTTA 100 38
JH254_RS07770 1637659 .. 1637686 - -13.4  -3.68261   GCAGAACAGGGTAAA        GGCCCTTCACGG TTGC CCGGGAAGGACC         TCGCCTCATTCGAGG  84 42
JH254_RS07765 1636742 .. 1636763 - -18.7  -4.56597   CTTTCCTGTGAAAAA           GCCCCGCCG GATC CGGCGGGGC            TTTTTGTGCTGCGCC 100 54
        nadK 1624610 .. 1624634 - -11.4  -3.53012   CTCGGCTGGTCGAAA          GCAGCGAGGG GTAAA CCCTCGCCAC          AGGTGTTGCCTGGCT  75 39
        recN 1621457 .. 1621497 -  -8.2  -2.79492   CGGTCAATCTGAAAG GGCCGACATGGACGGGAGGG CAT CCCGCCCGCCC-CGT-GGTC AGCTTGCGAGCAACT  57 24
JH254_RS07705 1620555 .. 1620575 - -16.9  -4.15703   CGTCAGAAACAAGAA            GACCCGCTC AGG GAGCGGGTC            TTGTGGCGTCAACCG 100 34
JH254_RS07700 NONE
JH254_RS07695 NONE
JH254_RS07690 NONE
JH254_RS07685 1614843 .. 1614873 - -15.4  -4.28361   GGAACCGCAGCAAAA       GCAGGCCGCTTCCC CGA GGGAAGAAGCCCGC       CAGTCACAAGATAAA 100 48
JH254_RS07680 1613470 .. 1613496 -   -13  -2.87132   CTCTTCTGCGATATA         TCCGCACGATGC CGG ACAACGTGCGGA         TGAGGCAGACACGGA  74 67
        dsdA 1609782 .. 1609798 - -11.5  -4.91109   CTCGCAGCAGAAAAA              CCCGCCA GGT CGGCGGG              TCACGGGGGCGAAAA 100 46
JH254_RS07660 1609259 .. 1609277 - -13.8  -4.35524   CGTTGAAATGCAAAA             CCGGCGCC ATG AGCGCCGG             TTTTTTTATGGAGGA  95 51
JH254_RS07650 1606441 .. 1606464 - -15.3  -4.93365   GCGCATAATGAAAAA          CCACCGCCC TGTTCG GGGCGGTGG           TTTTTTTGCGCAGTG 100 42
JH254_RS07640 1605365 .. 1605384 -  -3.5  -2.88544   TGCCATCGCCATACA            TCGCCAT ACAAAA AGGGCGA             ATGTGGATACTTATA  43 36
JH254_RS07635 1604441 .. 1604467 -  -2.2  -2.69609   AATAGTACGAAACAG         GGTCACAAACGA CAA CCCATTATGACC         TGGTCGGCGCTCTCC  38 67
JH254_RS07630 NONE
JH254_RS07625 NONE
JH254_RS07615 NONE
        rluE NONE
JH254_RS07605 1599286 .. 1599298 -  -6.2  -3.25942   AGGCTCTCAGATGAA                GGCC TTGAG GGCC                GACAGCGGCAGCCTG  54 4
        mnmA 1597840 .. 1597866 -  -6.5  -2.83905   GGAGAAGGGAGTACA        GCGC-GGACGCT CGTG AGCGCCCAGCCC         TTAGACCGGATGGCT  51 26
        hflD NONE
        purB 1595590 .. 1595628 - -14.5  -4.12942   TCAAATGGGCCAAAA   TCAACGGGGGCCCTGCC GTCAT GACAGAGCCCCCGCCGG   TTCGGTTACATCACT 100 40
JH254_RS07585 1594316 .. 1594349 - -27.5  -5.45726   TACAGCGGAAAAAAA     CGCCGCCCCTCCCGG CACG CCGGGAGGGGCGGCA      GCCCTCTGGATCAGC 100 36
        pykF 1592504 .. 1592521 - -14.1  -6.32216   AGAGATAAAAAAAAA             CGGCGCC CGCA GGCGCCG              CTTTCATCGGTTCAG 100 47
        mscK 1589041 .. 1589061 - -18.3  -5.93809   CGGGCAGAAAAAAAA            CAGGCCCCG TGA CGGGGCCTG            TGAAGCGGGCGAGAT 100 40
JH254_RS07570 1588330 .. 1588340 -  -2.4  -3.75153   TCGGGTCAAGGGAAA                 GGGG AGT CCCG                 GCGTCTCAGGCGGGG  51 31
JH254_RS07565 1587211 .. 1587241 -  -7.5  -2.70932   CGGTTTCCTGAAGGA      GGTGA-CCGGCTCC TGAG GGGGCCGGCTCACG       CAGGCCATGGCAGTG  53 74
JH254_RS07550 1583526 .. 1583551 - -13.3  -4.98522   AATGCCATAGAAAAA         GAGAGGGTTGC CCAG GCCACCCTCTC          TTTTTTCTGCCCTGC 100 68
        mobA NONE
        mobB NONE
JH254_RS07530 1578977 .. 1578994 - -14.1  -3.49618   GCCCGAGACAAGCAA             GCCCCGC ATCG GCGGGGC              TTTTTTGTGGGCGGT  85 55
JH254_RS07485 1569792 .. 1569807 - -11.8  -3.97947   GGCAGTGACGAGAAA              GGGGCC CTGG GGCCCC               TTTCTCTGTTGTGAT  85 122
JH254_RS07475 NONE
JH254_RS07470 1565762 .. 1565781 - -10.7  -5.27709   GGATAAAAAAATAAA            GCCAGCC GGTAAT GGCTGGC             TCAAAAAGGTGGTTG 100 128
        aceK 1556430 .. 1556447 - -12.7  -4.24726   AGAAGAATGTGAAAA             GGGACGC CATG GCGTCCC              TTTTTGTGCCTGATG  93 46
JH254_RS07425 1554885 .. 1554895 -  -2.4  -3.13403   CCTTTGCGATGAACA                 TGGC GAT GCCC                 TTAGGATCGCTGACC  43 463
        arcA 1553107 .. 1553126 - -13.6  -4.96848   GTCTTCACACAAAAA            GCCCACTC CTGC GAGTGGGC             TTTTTGTTGTCTGTT 100 138
        cydD NONE
        cydC 1549063 .. 1549091 - -14.5  -2.78596   GAGTGGGCCATTATA        GGGGGCAGTCGCC GAT GGCGACCAGCCCC        ATTTTTAGCCATATC  79 68
JH254_RS07385 NONE
JH254_RS07380 1548203 .. 1548230 -   -20  -4.01888   AGCCGACATCATAAA        GAAGAGGGCACC CCAG GGTGCCCTCTTC         TCATGTGGGGTGTTC 100 55
        tsaA 1546128 .. 1546144 - -10.1  -5.24129   TTTGCCCATAAAAAA              GCCACCC GGG AGGTGGC              TTTTTTCATGCTGCC 100 54
        cysK 1541742 .. 1541761 -   -15  -4.49389   AGCGCATAATGAAAA            CGGCGCTC CGAG GAGCGCCG             TCGTTTTGGTGTTGG 100 49
JH254_RS07345 1541078 .. 1541093 -    -9  -4.24342   TGGGGGAGGAATAAA              GCTGGA TTAC TCCAGC               TCGTCCATCAGGGCA  79 16
        ptsI NONE
         crr 1538706 .. 1538724 - -10.3  -6.07627   AGGGGCAAAAAAAAA             CCGAAGC ACCAG GCTTCGG             TTTTTGGCGGTCGCT 100 60
JH254_RS07330 1537906 .. 1537936 - -24.2   -3.1505   ATGACCCTCCATGAA       CAGAAAGGCCCCTG TCA CAGGGGCCTTTCTG       TTGGTGTGCAACCCG 100 48
        rdgC 1531225 .. 1531239 -  -8.5  -5.22312   ATGGAGATGAAAAAA               CCGCC GTGAA GGCGG               TTTTTTGCAATCAGG  93 55
         ggt 1528525 .. 1528556 -   -13  -2.83343   ACACCTATGAGCACA      CGGCATGGAGGAGG CTGG CCTCCTCCATGGTG       AACGAGGGTGCTGAA  74 47
JH254_RS07295 1526506 .. 1526526 - -15.4  -4.65895   CCCGTCATGCAAAAA            GCCCGGGC AGCAG GCCCGGGC            TTCTTGTCTGGCCCC 100 71
JH254_RS07285 1524131 .. 1524151 -  -9.7  -2.60496   GCCGTTTTTAAACAG            TCCCTGGAT TGA AACCAGGGA            AGATGAACCTCGCCG  62 436
JH254_RS07250 1513553 .. 1513571 -   -16  -4.90778   GTCATCTAAAGAAAA             CGGCTGCC TCG GGCAGCCG             TTTTGCATTCCGGGG 100 65
        bioA 1507177 .. 1507200 - -12.4  -3.61889   GAAAAAGCGCCGAAA          GGCCCTGCGT TCTC ATGCAGGGCC           CGTTCAACCGGACTC  79 39
JH254_RS07215 NONE
        asnS 1504281 .. 1504299 -   -16  -5.60993   GCGGGCATAAAAAAA             GCCGACCC CGG GGGTCGGC             TTTTGCACGGTGCGA 100 55
JH254_RS07200 1502595 .. 1502616 - -17.3  -5.24129   TGCGGGGATAAAAAA           GCGGCTCCC ACGG GGGAGCCGC            TCGCACCGGATGCCT 100 42
JH254_RS07195 1501802 .. 1501821 -   -15  -4.52781   TAAGGACAAGCAAAA            CGGGAGGC CATC GCCTCCCG             TTTTTTATGTGTCGC 100 53
JH254_RS07180 1498528 .. 1498561 - -13.2  -4.56597   GGTGGGGGCCAAAAA     CCAGAACGCGCC TGCTGGTATG GGCGCGTTCCGG      ATTCAGGGGGCGGCA  95 42
JH254_RS07175 1497248 .. 1497259 -  -4.4  -4.73108   GGGAGAAAATTAAAA                TTGC TTGA GCAA                 AGTGAAGGTTATGGC  75 185
JH254_RS07145 NONE
        dapE NONE
JH254_RS07135 NONE
JH254_RS07130 1490409 .. 1490426 -  -6.2  -2.91695   GCTAGGGCGAAATGA             CCGCGC GGGAAA GCGCAG              GGAAAGGGTTCAATC  51 139
JH254_RS07125 1488523 .. 1488541 -  -4.4  -3.01726   CCTTCTCACACAAAT             GCGGGCTA CGA TGGCCGGC             GCCTAGACGGGGTCT  46 28
JH254_RS07120 1487331 .. 1487361 - -16.9  -3.70863   GAGACATCATGCAAA       CAGGCCACCTCCC TGCCC GGGAGGTGGCCTT       TTACATGGGCCCGTT 100 59
JH254_RS07110 1484763 .. 1484777 -  -6.4  -4.62069   CCTTGATGGCAAAAA               CCCGTT TTA AACAGG               AGGCGTGAAGGGGGA  75 97
JH254_RS07105 NONE
JH254_RS07100 1483790 .. 1483813 - -19.6  -4.39329   AGGCCAGACAAGAAA          GGGGCCAGCC GCAA GGCTGGCCCC           TTCTCTATGGGAGGC 100 59
JH254_RS07085 1481229 .. 1481252 -    -3  -3.14602   CTGATGCCATCAAGA          TCGTGCTGGGC GCC GCCC-GCAAGC          TGATCTGATAGCCCT  43 155
        yiaY 1478928 .. 1478944 - -15.1  -5.11063   ATCAGCCAATAAAAA              GGGCCGC GTG GCGGCCC              TGGCAGATCTTGCCC 100 43
        bamE 1478463 .. 1478476 -  -9.5  -4.87592   CCAGAGAGAACAAAA               CCGGC AGAA GCCGG                TTTTGTGATGTCATC 100 40
JH254_RS07065 1477708 .. 1477725 - -14.1  -3.28924   GATGGGTTGTGACAA             GGGGCGC CGTG GCGCCCC              TTTGTGATCGTCTCG  83 55
        smpB 1476106 .. 1476119 -  -9.5  -2.53876   GTTGATGGCAATCGA               CCGGC CTTG GCCGG                TCGATTGCTGGTTTA  62 73
        ssrA 1475649 .. 1475672 - -16.8  -5.07941   AAAAGGATACAAAAA          GGGCCACTTC TTGC GAAGTGGCCC           TTTCCAAACGTTTGG 100 38
JH254_RS07025 1473308 .. 1473324 -  -9.4   -4.7497   CCCATCCATGAAAAA              GGACCC TTAGC GGGTCC              TTTTTCATGCCATGC  86 59
JH254_RS07010 NONE
JH254_RS07005 NONE
JH254_RS07000 1468558 .. 1468576 - -14.6  -5.14477   CATAGATCCAAAAAA             GAGAGGCC AGT GGCCTCTC             TTTTTTGTGGTAAGT 100 177
JH254_RS06975 1463006 .. 1463024 -   -16  -4.69664   CATACCATGCAAAAA             GGGGAGCC ACT GGCTCCCC             TTTTCTTTGTGCCCA 100 50
        sodB 1461726 .. 1461745 - -16.4  -5.67063   TCGACCATAAAAAAA            CGCCCCGC AAGT GCGGGGCG             TTTTGGCAAGAAAGG 100 45
        rimO 1418661 .. 1418683 - -17.8  -5.21709   GCGGACATTAAAAAA           GCCAGTCGGT GAG ACCGACTGGC           TTTGAGGGGGAGTGG 100 46
JH254_RS06730 1416450 .. 1416469 - -10.6  -3.02263   ACATGGCGGGGAAGA            GGGCCCCC CGCA GGGGGCCG             GGGTGATTAGCTGTT  67 32
JH254_RS06725 NONE
JH254_RS06720 NONE
JH254_RS06715 NONE
JH254_RS06710 NONE
JH254_RS06705 1410499 .. 1410511 -  -3.3  -2.80511   CCCAGAATTCAATCA                TGGGA GCC TCCCT                GCACACTCTGCCAGG  41 118
JH254_RS06700 1409588 .. 1409602 -  -7.1  -3.90291   ATGGGGTGAAGGAAA               CGGGA GCCTG TCCCG               TAGGTGTTGTCGGCC  66 50
JH254_RS06695 1407666 .. 1407685 -   -15  -5.42259   CGATGGGTAAAAAAA            CGGCGACC AAAA GGTCGCCG             AAAAGAAAAAGATAA 100 43
JH254_RS06690 1405910 .. 1405940 - -12.6  -4.56775   ATGGCTCGTCAAAAA       CAGCAGAAGCGCCA TTG TGGCGCTTCTGTCA       TGGGGCTTGCAATCT  95 42
JH254_RS06685 1405199 .. 1405220 - -10.1  -3.79251   CACGGCATGATGAAA           GAGGCCCCT TGCG AGGGGCTTC            TTTGTTGGTGGATGG  75 345
        astB 1400787 .. 1400811 - -21.5  -4.84363   GCAAAGGACTAAAAA          GAGAGCCGGGC ATT GCCCGGCTCTC          TTTTTTTATTGCGTC 100 65
JH254_RS06660 1398578 .. 1398597 -    -7  -3.09327   CGATGGGATTCAACA            GGGCGCGC CTTG GCACCCCC             TCTTCACTGTAATCC  54 61
JH254_RS06655 1397598 .. 1397635 -  -7.6  -3.66378   TATAGGGGATGCAAA   GGGGAGCCGATGCCCGG ATGTG CCGG-CACCAGTGCCCC   GGTCGTGCGGGGAAG  63 49
JH254_RS06645 1394991 .. 1395031 -  -5.4  -2.73875   CGTGGCTGAACATGA GGAGGAGGCG-GGCTCATC CCGT GATGAGCCTCATCTTATCC  GTATCAGACGGGAAG  47 105
JH254_RS06640 1393569 .. 1393599 - -25.6  -3.28712   GCCCGTTCCCGATAA       CCAAGAGGCCACCC CTG GGGTGGCCTCTTGG       TTGGTGTTCATTGCC 100 33
JH254_RS06630 1391152 .. 1391171 - -13.6  -5.61596   AGGGGCATAAAAAAA            CCGGCATC CTGG GATGCCGG             TTTTTGGGAGAGGCG 100 48
JH254_RS06625 NONE
JH254_RS06620 NONE
        ygjK 1386944 .. 1386962 - -11.7  -4.30719   CGCCGCCATAAGAAA             GGCCTCC CTTGC GGAGGCC             TTTTTGTTGGCTCAT  89 56
JH254_RS06605 1384254 .. 1384266 -  -4.8  -3.28684   AATGATGCAGAGGAA                CGGT CTGAT ACCG                TGTTCCACCTTGGTC  49 49
JH254_RS06600 1383036 .. 1383067 - -23.2   -3.8211   CGCCAGGCATAACAA      CAAGCCCGAACAGG TGCA CCTGTTCGGGCTTG       TTTCATTAGGCGGAT 100 58
JH254_RS06585 1378962 .. 1378984 - -14.9  -4.96848   CCTGTTAGATAAAAA           GAGACCGGC ATATA GCCGGTCTC           TTTTTTTTGAGCGAA 100 44
JH254_RS06455 1352627 .. 1352658 - -23.2  -3.10715   CTCATGACGACTGAA      TGAAAGAGGGGGCC TGCG GGCCCCCTCTTTCA       TGTATGCACTGCGAC 100 46
JH254_RS06440 NONE
JH254_RS06435 1348434 .. 1348452 -   -16  -4.85653   CACATAGAAAAGAAA             GAGGGGCC GGA GGCCCCTC             TTTGTATGGATGGGA 100 45
JH254_RS06425 NONE
        torA 1342417 .. 1342435 - -13.1  -4.77567   ACCGCGATAAGAAAA             CGGCGCC TTGAT GGCGCCG             TTTTTGTTGCTCACT 100 48
JH254_RS06395 1338899 .. 1338923 - -15.7  -3.49475   GCCACGGCGAGAGAA          GCTGCTGCGCC CCT GGCGCAGGAGC          CTGCAAGTAGCCGGG  85 84
JH254_RS06380 1336292 .. 1336334 - -23.4  -4.01137   GATAGAAGGGATAAA TGACAGAGGGGCGGCCCGTC GAT GACGGGCCGCCCCTCTGGTT TCCGACAGAATCGGT 100 62
        folK 1332017 .. 1332038 - -15.9  -2.78384   CGGGCCGCCATGACA           TGAGGCGCC TTTG GGCGCCTCA            TGTGTGTGAACGGCT  82 40
JH254_RS06345 1330462 .. 1330478 -  -4.3  -3.34404   GCAGCAAGCAGAATA              CGAGCAA GCG TCGCACG              TTACATCTCCTGAGC  49 273
JH254_RS06340 1329584 .. 1329597 -  -5.2  -4.07885   GATTTCGCTGCAAAA               CCCG ATCCTG CGGG                ATGTGAAGCCTTGAG  64 141
JH254_RS06330 1327800 .. 1327821 -  -8.7  -5.71712   TGGGAGATAAAAAAA           GCGGCAATC CGAA GATTGCCGG            GAGGAATGTAGTGAG 100 207
JH254_RS06315 1325456 .. 1325474 - -11.7   -4.7254   ATTGTCGATGAAAAA             CGCAGGC CTCGT GCCTGCG             TTTTTTTATGGGCGT 100 82
JH254_RS06295 1319862 .. 1319880 -   -16  -5.60993   TCGGCCATAAAAAAA             CCGGAGCC AGT GGCTCCGG             TTCTTCATTGTTCGT 100 48
JH254_RS06265 NONE
JH254_RS06260 NONE
JH254_RS06255 1310698 .. 1310715 - -12.7  -3.89346   TCCGGATGTGACAAA             GGCGACC CCGG GGTCGCC              TTTATTCATTCTGTG  89 114
JH254_RS06245 1307795 .. 1307808 -  -3.7  -3.17229   ACCTGAGGATCAACA               CGGCG CTGG CGCGG                GTGACATAACCCTGC  46 91
JH254_RS06230 1305192 .. 1305208 - -13.7  -5.93809   CCGGCACAAAAAAAA              GCCCCTG AAA CAGGGGC              TCTTTTCAAAAAAAA 100 233
        pyrB NONE
JH254_RS06220 1303696 .. 1303713 - -12.7  -4.59109   GACAGGGTTCAAAAA             TGGGCCC GATG GGGCCCA              CATGGATATCCTTTG  95 52
JH254_RS06215 1302993 .. 1303010 - -12.7  -5.06414   CGCGGGCAACAAAAA             GGCGACC CCGG GGTCGCC              TTCTGGCATCCAGCA 100 45
JH254_RS06190 1297136 .. 1297152 -  -5.8  -3.09516   GCGGGGATGACCCAA              GAGGAG CTCGC CTCCCC              TTGGGCGAGAGGGTC  52 39
        galE 1284823 .. 1284855 - -10.6  -3.08813   TGTGAGTTGAATACA     TCCGAAGGCGCAGGC CAGG GCCTACGCCT-CGTA      ACCATTGGGGTTGGC  68 14
JH254_RS06150 NONE
        galK NONE
JH254_RS06140 1281380 .. 1281411 -    -3  -2.70932   GCTGGTGTGCAATGA     GGAGCGACGGGCCC TGCGGC GGGCC--TCACCCC      GGCTGATTCGGCGGT  40 110
JH254_RS06135 1280133 .. 1280157 -  -7.8  -4.36914   GGGGTCTGGATAAAA          TCAACCCCGA ACGGG TCGGGGCTGC          CAATGATGGCGGAAA  77 220
        bacA 1279239 .. 1279254 - -10.4  -5.18357   CAAGGCATGAAAAAA              GGGACC CTCG GGTCCC               TTTTGTGTTGCTTGG 100 53
        argS NONE
JH254_RS06105 1274295 .. 1274322 - -22.8  -4.64861   TGGCGCCAAAAGAAA        CAGGGCCGGGTG TTGC CACCCGGCCCTG         TGCATGGACGCGGCG 100 42
        hslV NONE
        hslU 1272113 .. 1272142 -   -13   -4.1585   GGAGAACGCTGAAAA       CGAAGACGCCTCC ACAGG GGAGGCGTCTT-G       CTATGGGATTGAGCA  91 81
JH254_RS06085 1269366 .. 1269381 -  -4.8  -3.05816   GCATTTTGTACGCAA              TTATAC GACC GTATAA               AAAATGCGGAAGCGG  47 245
JH254_RS06080 NONE
        hlyD NONE
JH254_RS06070 1265929 .. 1265978 -  -5.5  -2.87132   TCTCCTTGCGACACA GGGCCAGCAGTCGCCGACGGTTGA TGC TCATGCGTCCTCCTC-GCTGGCCC GCTCGACCAGGGTGA  47 3
JH254_RS06065 NONE
JH254_RS06060 1263697 .. 1263724 -    -9  -4.07687   ACTTCTGGCGGAAAA        GGCTGGCCTCGC ACTG GCGAGACCGGCA         TCAGCTGAACAAGGT  75 47
JH254_RS06055 NONE
        nirD 1260368 .. 1260387 - -12.8  -3.01712   TTGTTTCCTTCAAGA            GGGCCGCC CGCG GGCAGCCC             TGACTGTTTTTTAAC  75 125
        nirC 1259520 .. 1259530 -  -2.4  -2.73735   AAAGATGGGCAAGTA                 GTCC ATG GGGC                 CTCCTGATCAGGCGG  39 33
        cobA 1258083 .. 1258100 - -12.7  -4.97405   ATGCAGAAAAAGAAA             CGCCACC CGAG GGTGGCG              TTGGAATAGATGCAG 100 44
        mgtE 1256516 .. 1256542 -  -9.4  -3.53012   CGTTTTTGCGCGAAA        GCGGC-CCCGC GTCATG GCAGGAGCCGC         AGACGGTCAGCCTCG  66 45
        rraA 1255887 .. 1255904 -  -6.9  -5.24531   AGCGGGCATAAAAAA             TGGGAGC CAGG GCACCCA              TTTTCACTCAGCGCT  89 43
JH254_RS06010 1252674 .. 1252693 -  -7.8  -3.71174   AACAAACAGTGGAAA            GGCGCC CGTTGGTC GGCGCC             ATGCATTATTTCAGG  67 31
JH254_RS06000 1250116 .. 1250130 -  -2.2  -3.62775   AGGAGGGGGTAAGAA               TTCTAA TGA TTAAAA               TCAGCTTAGAAGCGC  48 63
JH254_RS05995 1249400 .. 1249419 -   -15   -4.4078   TTTGCCCAACTAAAA            GGGCCACC GCTC GGTGGCCC             CACTGGTGGAGTCTG 100 123
JH254_RS05945 NONE
JH254_RS05940 NONE
JH254_RS05935 NONE
JH254_RS05930 1237173 .. 1237186 -  -3.1  -3.80515   AAATTACAACAAATA               GTGAC CGTC ATCAC                GGGATAAGTGGTGCT  53 44
JH254_RS05925 1236059 .. 1236075 -  -5.7  -5.24129   CTCCTGTACAAAAAA              GGGCTGG TAG CCTACCC              GATGCCGCCGGGTCT  89 88
        yegD 1234498 .. 1234543 -  -9.6  -3.05596   TATCTGGGCATTGAA GGGGCTCCGGTGGTGGGTATG ACAAG CATACCCGTCCCCGG-GCCCG GGCGGCAGGGCGAGG  66 154
JH254_RS05915 NONE
JH254_RS05910 1233063 .. 1233087 -  -2.8  -3.72893   TATTGGGTCAGTAAA         TCG-GCAAGGGC GTT GCCC-TGCTCGT         GCAGGTGTTCGAGCT  53 94
        malZ 1230970 .. 1230983 -  -6.7  -3.21924   TGACTCCGGATAACA               CGGTA GGGG TACCG                TTTTGTTATCCGGTT  56 123
JH254_RS05895 1230216 .. 1230226 -  -3.2  -3.59979   GTTGTTCAGGGTAAA                 TCCG CAT CAGA                 ACCTGGCCTGGTTGA  50 21
        holA NONE
        nadD 1228483 .. 1228515 -  -8.9  -3.01712   CCCGGCCTGGCAATA      GTCAGGGCCGGGCCC GGT GCGCCCGGACGTGTC      GGCTGACCCGCCTGC  61 51
        rsfS NONE
        rlmH NONE
        mrdA NONE
        rodA NONE
        mltB NONE
JH254_RS05855 1222439 .. 1222449 -  -4.6  -5.47399   CCAAGTTGAAAAAAA                 GCGG GCC CCAC                 TATACCAGATGTGCG  88 133
JH254_RS05850 1221117 .. 1221149 - -14.2  -4.18401   GGACAGACCGCAAAA     GACAGCAGCGGCGCC TGTT GGCGCCGCTGCT-TG      AGGAAGGGTCTGTTA 100 38
JH254_RS05845 1220585 .. 1220612 -   -17  -3.90744   CCGGGCGGCAAATAA        TCAGTCGCCCCG GTGG CGGGGCGACAGA         GGCAACTTACAGGAC 100 32
        lipB NONE
        lipA 1218738 .. 1218755 - -12.7  -5.61596   ACGGCGATAAAAAAA             GAGCGCC CAGA GGCGCTC              TTTTTTCTGCCAGCA 100 52
JH254_RS05830 1217616 .. 1217655 -  -2.1  -3.61398   GGCCGTTTCCAAGAA CATCAACACCGCCTTCGGC CTTG GCCT--GACGGTGCTGGTG  GTCATGGTGATCGCC  49 518
        mscL 1211718 .. 1211731 -  -9.5   -5.4505   CCCTGCAACAAAAAA               CCGCC CGAA GGCGG                TTTTTTTTCAGCACA 100 58
        fldB 1209890 .. 1209903 -  -3.7  -4.94972   GACCAGAAGCAAAAA               GTCGC TATA GCGTC                AGCCGATGATACCGA  76 211
JH254_RS05780 NONE
JH254_RS05775 1207000 .. 1207019 - -16.4  -5.64274   CCATGGATAAAAAAA            GCGGCGCC TGAT GGCGCCGC             TTGAAGGGGGAAGAG 100 60
JH254_RS05770 1206484 .. 1206515 - -23.2  -3.66874   GCAAGTGCAGTTAAA      CAACAACGGCGACC ATCA GGTCGCCGTTGTTG       TTTCTGTATATCCGG 100 44
        yegQ NONE
JH254_RS05755 1203070 .. 1203085 - -11.8  -5.09762   AGCGCAATAGAAAAA              GCCGGG CATG CCCGGC               TTTTTCTATTTTTGG 100 418
JH254_RS05745 NONE
        yhbY 1184939 .. 1184960 - -13.1  -3.58779   AAGAAGGGAAATGAA           GGAAAGAGC GAAT GCTCTTTCC            TGTTACTTGCGCGGC  81 28
JH254_RS05655 1184237 .. 1184257 - -16.9  -3.24232   CGTCGGGGAAAGAGA            CAGGGGAGC CGG GCTCCCCTG            TTGTCTTTAGTCACC  90 32
        xseB NONE
        ispA NONE
         dxs 1178624 .. 1178641 - -14.1  -5.30348   AGTGAATAACAAAAA             GGGCGCC ATAA GGCGCCC              ATTTTTATTGCTTGC 100 52
JH254_RS05550 1163451 .. 1163473 - -12.7  -3.40403   CTCCGTGGATGACAA           TCGGGAGCC TTGAT GGCCCCCGA           TTCTAACGACTTTAA  79 133
        torD NONE
JH254_RS05540 1162384 .. 1162404 -  -2.4  -2.99596   GTGAAATCAACGAGA            TGTCAGCC TTTCT GGCGGCCA            AACGCCTGGATCCCG  41 7
JH254_RS05535 1160441 .. 1160463 - -17.8  -3.60296   CACGTTGAGGGCAAA           GAAGGGAGCC ATG GGCTCCCTTC           TTTGCTTTCGTGGTG 100 54
         acs 1158324 .. 1158354 - -17.7  -3.04144   TCCGGATCCCGAAGA       CAACAAAGCCGGC ACGTG GCCGGCTCTGTTG       ACGTGGGGAAGAGAC  89 41
        aroQ NONE
JH254_RS05520 NONE
        accC 1155557 .. 1155576 - -13.6  -5.70522   AAGAATAACAAAAAA            GGGCCATG TCGC CATGGCCC             TTTTTTACGTTGGTG 100 232
JH254_RS05510 NONE
        panF NONE
JH254_RS05500 1152082 .. 1152106 -  -5.5  -3.19602   CCTGCCAGAGCAACA          GCCTGCTGGCG CTG CGGGAGCTGGC          ACTCCATGACGGGGG  51 225
JH254_RS05490 1149881 .. 1149899 -    -3  -3.09933   GGGGAAGGGAGGTAA             CTCTGCCA AGT TGGCACGG             TTAATGTATTCCTTC  43 442
        prmA 1148750 .. 1148779 - -22.3  -3.53343   AACGGCGTCCGGAAA       CGACAAGGGCACC CTGG GGTGCCCTTGTCG        TTCAGCGACCTAAGT 100 152
JH254_RS05480 1148026 .. 1148068 -  -4.6  -4.23723   CAAGACCATGGAAAA CGCCAGCATGCAGGTGGTGC ACT GCATCGACCGCTTGCTGGAA AGCGCCTGAGCGAGC  65 55
        sppA 1141572 .. 1141585 -  -9.5  -5.60993   TGCCCCATAAAAAAA               CCGCC TGTC GGCGG                TTTTTTTATGGCTGT 100 49
JH254_RS05445 1138506 .. 1138526 -    -4  -2.74605   CTCCTTGAAAATTGA           GCCATGAAC ATGG GTTC-CGGC            GGGCAGATCCTGTCG  43 43
JH254_RS05440 1138126 .. 1138150 - -20.1  -5.60864   TAGAGAGGAAAAAAA          GAGGGGAGCCA TTA TGGCTCCCCTC          TTTCGTTTCGTTACC 100 65
        gltS 1135190 .. 1135221 - -23.2  -3.96148   GCTGGCGAGCAGAAA      TGACAGAGCCCACC GCAA GGTGGGCTCTGTCA       TACGGGGCCTGCGTC 100 46
        prfB NONE
        lysS 1130107 .. 1130126 - -16.4  -5.60993   TCCGTCATAAAAAAA            CGCCCCGC AATT GCGGGGCG             TTTTGATTGCCATGG 100 78
JH254_RS05405 NONE
        cysI NONE
JH254_RS05395 1124697 .. 1124716 - -16.4  -5.38054   CTGCACAAAGAAAAA            CGCCCGGC AGTT GCCGGGCG             TTTTTTTGTGGGCGC 100 64
         mog 1115901 .. 1115921 - -15.4   -3.8901   GCGCAAATGAGCAAA            GGGCGGGG GAAAT CCCCGCCC            AGTGCTTATTTCTTC  95 31
JH254_RS05335 1113171 .. 1113188 - -12.7  -4.28254   GCGGAAGATGCAAAA             GAGGGCC GACA GGCCCTC              TTTTCATTGTCAGAT  93 52
JH254_RS05280 1099150 .. 1099162 -  -5.5  -3.05022   GGTTCGAGATAGACA                GCCAC GAG ATGGC                GCTGCAATTGCTGAT  49 457
JH254_RS05270 1098051 .. 1098068 - -12.7  -4.90136   AATCAACAGCAAAAA             GGCCAGC ATAT GCTGGCC              TTGGCGCATCAGGCG 100 45
JH254_RS05235 1089801 .. 1089825 - -17.2  -5.31877   AGGGAGGACAAAAAA          GATGCCCCGC ACGGG GCGGGGCATC          GGTATGGTCGTGAGT 100 45
JH254_RS05205 1079705 .. 1079724 - -16.4  -3.53811   GGGACCTTGGGCAAA            GCCGGCCC GAAC GGGCCGGC             TTGTGGTTTGCTGGT  93 44
JH254_RS05200 NONE
JH254_RS05195 1077490 .. 1077501 -  -2.2  -3.56727   TTCAATCAACCAGAA                CCAC ATGG GTGA                 CTCCTTAGGCTGCGG  48 30
JH254_RS05190 NONE
JH254_RS05185 NONE
JH254_RS05180 NONE
JH254_RS05175 1074472 .. 1074491 - -11.4  -4.82901   GCGGTGCCATAAAAA            GACCGCTC GGAA GAGCGGCC             AATTGCCACCAAGGC 100 129
JH254_RS05160 1072452 .. 1072483 - -11.6  -5.44119   TCTATCCTAAAAAAA      TGCCCCGG-CCAGCA GAT TTCTGGGCCAGGGCA      TTTAACCGGTTCAAT 100 70
JH254_RS05150 1069445 .. 1069463 -   -16  -4.47217   AATCAGCAACGAAAA             GGCCGGCA TGT TGCCGGCC             TTTGGTGGCAATCAG 100 45
JH254_RS05145 1067859 .. 1067880 - -15.9  -5.14563   GGCGGGATCAAAAAA           GGGGAAGCC GTCC GGCTTCCCC            TTTCTCATGCAGAGA 100 51
JH254_RS05120 1063616 .. 1063648 - -22.1  -3.62572   CAGGATGAGGGGAAA      TGAGACAGGCCAGCC CAT GGCTGGCCTGTCTCG      AGGAGGACGGGCGCC 100 47
JH254_RS05090 1056707 .. 1056720 -  -9.5  -5.53991   GATTGATGAAAAAAA               GGGCC CAGG GGCCC                TTTTTCATCCGTCAT 100 51
JH254_RS05085 NONE
JH254_RS05080 NONE
JH254_RS05075 1054781 .. 1054805 - -22.9  -4.90302   CAGGAACAAAATAAA          CGGCCCACCCC GAG GGGGTGGGCCG          TCAAAAACTGGCTGG 100 43
JH254_RS05070 NONE
        ilvN 1051775 .. 1051790 - -11.8  -4.88407   CGATGCAATGAAAAA              CCCGCC GAGA GGCGGG               TTTTTTTATGGCTCG 100 455
JH254_RS05050 1047536 .. 1047551 - -11.8  -4.66833   CCTGAATGTGAAAAA              GGCGCC TGAG GGCGCC               TTTGTCGTCAGTCTG  95 52
        dapA NONE
        bamC 1043594 .. 1043612 - -11.7  -4.84311   CCGGACATAACAAAA             CAGGGGC GCGAG GCCCCTG             TTTTCATGCTTACTT 100 35
JH254_RS05020 1042250 .. 1042270 - -15.4  -4.46267   ACAACCCAATGAAAA            CGGGCCCC GTCAT GGGGCCCG            TTTTGTCATCTGCGT 100 104
JH254_RS05010 1040611 .. 1040630 -  -3.5  -4.59846   ATGACAGAAAAATAA            CGGGATG CAGGCT CACCCCA             GCAGATAATGGGGCC  69 18
JH254_RS05005 1039870 .. 1039903 - -10.4  -3.14132   GGCCTCGCTGATCAA     CATGGGCACATC GGGAATCAAA GATGTGCCCACG      TTACTGCAACGGGGA  68 47
JH254_RS05000 1039391 .. 1039408 -  -3.3  -3.53091   ATCCCGGTGCCCAAA             GCGCGAG CCAC CTCTCAC              TTGACTGGATTATCA  48 22
JH254_RS04995 1038548 .. 1038570 - -19.2  -2.63723   CCCGTACCAAGCAAG           GAGGCCACCC CCG GGGTGGCCTC           TTCATTTGCACAACC  91 49
        arcB 1035027 .. 1035040 -  -5.9  -2.78384   GTCGTGTCTACGAGA               GCAGC CAGC GCCGC                AGGCGGGCGATGTCA  49 4
         dgt 1033396 .. 1033410 -  -4.2  -5.14563   CGGGTGATGAAAAAA               GCAGGT GTT ACCTGT               CCCCTCCACGCGGCA  81 228
JH254_RS04975 1033064 .. 1033083 - -13.6  -5.34309   ATCAGGAAAGAAAAA            TGGCAGGC CCAG GCCTGCCA             TCTACCAGGTTGGGG 100 57
JH254_RS04970 NONE
JH254_RS04965 NONE
JH254_RS04960 1025435 .. 1025460 - -20.5  -5.75342   TCGGGCCAAAAAAAA         CGGGGCAGACC CAGA GGTCTGCCCCG          TTTTTCTCTCCCTTG 100 43
JH254_RS04935 1021245 .. 1021264 -   -15  -3.53531   CCAGCAACATCAGAA            GACCCGGC CCGT GCCGGGTC             TCTCTCATCCGGGCT  88 40
JH254_RS04920 NONE
        tsaE NONE
JH254_RS04910 1015556 .. 1015600 - -16.3  -3.14211   ACCTGGCGCCATCAA TGCTCACCGCCCCTCCCTGCC ATC GGCAGAGAAGGGCGGCGTTCT TCAGCCCGCGCTATT  88 36
        mutL 1013606 .. 1013622 - -10.1  -3.10354   CATATGGATGCAACA              GACGACG AGA CGCCGTC              AGTTGCCATCGGCAA  66 24
        miaA 1012593 .. 1012606 -  -3.8  -3.97511   TATTCAATATAACAA               CCTG ATTATA CAGG                AGTGTCAAGCCGGAC  58 30
         hfq NONE
        hflX 1010930 .. 1010941 -  -2.2  -2.51133   CATCGACCCATCAAT                GCCT GATA AAGC                 GTTGTAAACTCTCAC  38 9
        hflK NONE
        hflC 1008751 .. 1008770 - -13.6  -4.87803   GACCGGCAAACAAAA            GGGCCTGA ATCA TCAGGCCC             TTGGGTCATATCAAC 100 47
JH254_RS04875 1008448 .. 1008463 - -10.4  -5.55769   GCGGACAATAAAAAA              GAGGCC CTCT GGCCTC               TTTTTTATTGTCTGA 100 62
        rplU 1006903 .. 1006916 -  -2.3  -2.60194   ACTCCTCTAATTAAG               CGCTG ATGC CAGTG                ATTTTGACTTCAGTG  38 7
        rpmA 1006580 .. 1006600 - -18.3   -5.3658   ATCAGAAAAACAAAA            GCCCCGCCA GGT TGGCGGGGC            TTCGGATCCTTGCGG 100 48
        cgtA 1005190 .. 1005210 -   -14  -5.93809   CTCCCATAAAAAAAA            CCGGAGCC TGTCT GGCTCCGG            TCTTGTCACGAACAT 100 46
JH254_RS04850 1003452 .. 1003471 - -12.2  -5.60993   TCGCCCATAAAAAAA            CGGTCAAC CCAG GTTGACCG             TTTTTCGTTCCACTT 100 47
JH254_RS04840  999267 ..  999286 -  -4.9  -3.10715   GTTACTACCACGCAA            TCGTGGC TTTTGC GCCCCGA             GCAGCCAGGCTTGGC  47 70
JH254_RS04835  998615 ..  998647 - -17.7  -4.15854   AAATGGAGCTGAAAA      CAGAACGGGCCCGGC AAT GCCGGGCCCGTTTTT      TCATGATGAGCGGAT 100 40
JH254_RS04800 NONE
JH254_RS04795 NONE
        djlA  988974 ..  988992 - -14.6  -5.45802   CTCTGAAAACAAAAA             TGCCCGTC ATC GACGGGCA             TTTTTTTATGGCGGG 100 49
JH254_RS04765  982901 ..  982927 -  -8.6  -3.65351   TCAGCTCCATGGAAA         GCAGGGCATCGA TCA TCGCCGCCCTCC         CCGGTTCAAACCGCC  66 103
JH254_RS04760 NONE
JH254_RS04755  980817 ..  980837 - -18.3  -4.35044   TCATCCAAATAGAAA            GGGGCTGCC AAT GGCAGCCCC            TCTGTTTATCCGGCT 100 61
JH254_RS04740  977470 ..  977499 - -20.9  -3.95073   GGTGAGATTCAGAAA       CAAACAGAGCGCC CTCG GGCGCTCTGTTTG        TTTTTGTCTGCGGGA 100 45
        hutX NONE
        hutZ  973346 ..  973365 -   -15  -4.97957   GACATAACAACAAAA            CGGGCAGC CCAG GCTGCCCG             TTTTCTCATCTCGCT 100 51
JH254_RS04695  969013 ..  969028 - -11.8   -4.4648   ACCTTCATGACAAAA              GGGGCC TGAG GGCCCC               TTTTCCTTCATGCTG  91 52
JH254_RS04690  967613 ..  967652 -    -7  -3.48276   CCCTTGTCCAGATAA  GTCGGAGGCCTGCCGCGCC AGA GAC-CGGCAGACCTGTGTC  ATCGGCCCTGTTCAG  58 24
JH254_RS04685  963770 ..  963785 -  -2.5  -5.00339   ATTAACAACGAAAAA              GGCAA CGCAAC CTGCC               AGGTAACGCAGACAA  72 366
JH254_RS04680  961095 ..  961111 - -13.7   -5.1244   GCAGCAAGACAAAAA              TGGGGCC CTC GGCCCCA              TTTCTCATCACGGCA 100 43
JH254_RS04665 NONE
JH254_RS04660  958246 ..  958266 -   -14  -5.06414   CTCTTTCAACAAAAA            CGGCCTGC TTCAC GCAGGCCG            TTTTCCATGCACGCC 100 56
JH254_RS04640  954726 ..  954763 - -16.3  -2.59569   CCTGCAAAGCAAGAT   CCGGC-GCCAGAGCGC GGCACGG GCGCGCTGGCAGCCGG   CCCAGATCACCCGCA  80 351
JH254_RS04620  951985 ..  951999 -  -2.8  -3.30903   AAAACGGGCTCAGAA               TACCTC AAA AAGGCA               GACAAGCATATGGTT  46 119
JH254_RS04615  951266 ..  951282 - -15.1  -5.28176   GCCAGCCATAAAAAA              CCCGCGC CAT GCGCGGG              TTTTTTATCATCGGC 100 51
        fkpA  949081 ..  949098 - -12.7   -4.9755   ATACACAAGCAAAAA             CGGCTCC CTGG GGAGCCG              TTTTTATGGTGCTTT 100 45
JH254_RS04595  947501 ..  947532 - -21.6  -2.60714   CCAAACTCTGATAAG      CGTGCGGGGCGACC AATT GGCCGCCCCGCACA       TCAGCATGTCTGCCC 100 59
JH254_RS04575  943773 ..  943796 - -16.8  -5.48213   CATTGAAAATAAAAA          GAGAGGCAGC CATG GCTGCCTCTC           TTTTTTATTGGCTCG 100 52
        dnaB  940934 ..  940955 -  -7.9  -2.89323   AAAACTGTTTATAGA           TGCCGGGAG CAGG CTCCCGACT            TACTTAGTAGTCATC  56 29
         alr  939668 ..  939689 - -18.7  -4.72986   CACGCCCATGAAAAA           GGCCGCCCC TGTC GGGGCGGCC            TTTTTGTTCTCCCTT 100 83
JH254_RS04550  934762 ..  934793 - -10.2  -4.44046   GTGATGGGAAATAAA      GATGAAAAGGGTGC CATG GCGCCCTTTTCATT       GCAGATCTGCCGTCA  88 38
JH254_RS04540 NONE
JH254_RS04535  931631 ..  931650 -    -5  -3.25823   CGCTCGTCATATCAA            CCTCGACCT GAC AGGCC-AGG            CAGGGTGCGCTGATG  52 2
JH254_RS04530  930036 ..  930059 - -16.8  -3.00525   TCCTGCCAAACGACA          GAGGGATGGC CTGC GCCATCCCTC           TTGCTTTGTTGCTCG  87 53
JH254_RS04510 NONE
        nrfD NONE
        ttrA  921308 ..  921325 - -14.1  -3.51478   AGAGCAGACAAGCAA             CGGGGCC CGCA GGCCCCG              TTTTCATTGGTTTGT  85 40
JH254_RS04460  915854 ..  915869 - -10.4   -2.5937   ATAGAGTGGCACAAC              CCGCTG CCAT CAGCGG               CTCACCTGCGGCCCT  64 19
JH254_RS04455  914948 ..  914990 -  -6.1  -2.57931   CTGATCGCGCATAAC GTCCGGTTCGAAGGGCTGC AAATG GCCGCCACTCTAGCCAGAC TCCCCGCCCCCCGCC  48 158
JH254_RS04450  912923 ..  912948 -  -6.9  -3.11966   GATAACACAGACATA         GAGGCTCGA ATAAGGCA TCAAGCCTC          TCACGAAGAGAGATG  54 162
JH254_RS04445 NONE
JH254_RS04440  912128 ..  912146 -  -8.1  -3.14211   AGCCCTTCCCATGAA            GGGAGGGC CCTA GCCC-CCC             TTGCCCAGCACCGCT  60 16
JH254_RS04435  911301 ..  911311 -  -6.8  -3.18383   AGGCCTACCCATCAA                 GCAG GCA CTGC                 TGACGCTGGAGAGGG  53 74
JH254_RS04420  907857 ..  907876 -  -2.1  -3.51365   TTATACCGGACATAA            TGCCGAT GAAGAT ATTGGCA             TCATATCACTGCGGG  46 26
JH254_RS04415  907540 ..  907553 -  -8.1  -5.71712   CCGGATACAAAAAAA               CCAGC CTGA GCTGG                TCTGTTTGGTACTGC 100 228
JH254_RS04405  904819 ..  904846 -   -10  -2.50074   TTTTCCATAAGACAC        CAATGACTGTAT ATAA AAACAGTCATTG         TGCGCTTTTGGCCCG  62 78
JH254_RS04400  903869 ..  903882 -  -5.2  -3.05819   GAGACACTTTTAACA               CGGC ATGGGG GCCG                GTTCCAACTCAGAGT  50 34
JH254_RS04395  903359 ..  903382 - -18.2  -4.05033   GCTATCGGATACAAA          GAGGGCTCCC CGCG GGGAGCCCTC           TTCATGGGATCAGGC 100 86
JH254_RS04385  900730 ..  900745 - -11.8  -4.25256   CCGCCATGAAAACAA              CGCCCC GCCT GGGGCG               TTTTTTTATGGATTT  90 464
JH254_RS04285  879801 ..  879830 - -20.9  -3.57144   CTCGTCATCCCGAAA       CAAAAACCGGCGC CTGG GCGCCGGTTTTTG        TTGTTTCCAGGGGGA 100 42
JH254_RS04265  876101 ..  876116 - -11.8  -3.46914   AGGATGGAGCAAAGA              GGGGCC GCGA GGCCCC               TTTTTTGTGCGGCTC  78 48
JH254_RS04250  873929 ..  873944 - -10.4  -4.72272   TGCGTCCATGAAAAA              GGCAGC CTCG GCTGCC               TTTTTCATTCCCTGC  95 64
        mscM NONE
JH254_RS04235 NONE
JH254_RS04230  866365 ..  866381 - -10.8  -5.60993   GGGTTTATAAAAAAA              GGGGCC TGAAC GGCCCC              TTTCTTCCCATGGTC 100 43
        frdA NONE
JH254_RS04220 NONE
JH254_RS04215 NONE
        frdD  862453 ..  862469 - -10.8  -5.61596   ATGGTCATAAAAAAA              CCGGGC ACTGG GCCCGG              TTTGTCATGCAGTCA 100 49
JH254_RS04185 NONE
JH254_RS04180 NONE
JH254_RS04175 NONE
JH254_RS04170 NONE
JH254_RS04165  854430 ..  854469 - -13.6  -3.53012   GTTCTCTCCCTCAAA  CGACACTGCCCACCAG TATGCAAG CTGGTGGGCAGAGTTG   AAATAGCACACTGTG  82 51
JH254_RS04160  853715 ..  853725 -  -3.2  -2.54896   GGCGGATGGAACGGA                 CACG GCT CATG                 GGGCGGAGGCTCCTC  39 21
JH254_RS04155  852209 ..  852240 - -13.9  -4.79667   AAAACCTAGTAAAAA      CAATGCCAGTCAG GCTTAA CTGACTGGCATTA       GGGCCTGGCCCCCGT 100 70
JH254_RS04140  848136 ..  848167 - -18.2  -2.53271   TGAGCGCCAGAATAT      TGACGGCATCGGTGA TGG TC-CCGATGCCGTCA      GTTGATTGTCGATTC  86 59
JH254_RS04125 NONE
JH254_RS04120 NONE
JH254_RS04115 NONE
JH254_RS04110 NONE
JH254_RS04105  835166 ..  835189 - -18.2   -3.6502   CACTCTGTATGCAAA          CGGGCCACTC CAGT GAGTGGCCCG           TTTTGTTGCCGCACG 100 67
JH254_RS04095  830290 ..  830300 -  -2.4  -2.73275   GACTGACATAGACGA                 CTCC AAT GGTG                 CGGACAAGGTTCGAG  39 84
        pflA  829410 ..  829435 - -17.6   -4.4078   CTGGCGCAATGAAAA         GAGGCCGCCC TCTGCC GGGCGGCCTC          CTGTCTCAATACTTC 100 31
JH254_RS04085  828662 ..  828677 - -11.8  -5.00895   GCCAGCAGAGAAAAA              GCCCGC AACT GCGGGC               TTTTTTTATGGACCA 100 50
JH254_RS04060  824020 ..  824039 -   -15   -5.1356   GTTCATCAACAAAAA            GCCCGGCA GCAG TGCCGGGC             TTTGTCGTGCCATGG 100 44
JH254_RS04045 NONE
JH254_RS04040  820989 ..  821004 - -11.8  -3.40403   TTCCCCCGATGACAA              CGCCCC GCTC GGGGCG               TTTTTTTATGGTGGG  78 31
JH254_RS04020  818025 ..  818046 -  -2.9  -3.45023   GGAGCACGACGAGAA           CAGCCTGGCC TGG AGCCTG-CTG           TCGGACGCCTACCGC  49 369
JH254_RS04010  816382 ..  816396 -  -4.2  -3.15583   TCAATACATCTAACA               TCGAGG CTT CCTTGA               ATGGCGGCTCACGCG  47 34
JH254_RS04005  815202 ..  815226 -  -7.2  -2.68338   AGCAAGTCAAACGGA          TGTCGGTTTT CAATT AAACCCGACA          AGGCAAGCATGAGCC  53 111
JH254_RS04000  814288 ..  814302 - -11.4  -5.04385   GATAGCCGTAAAAAA               GGAGCC ATG GGCTCC               TTTTTTGTTGTCCAG 100 52
        ppk2  812338 ..  812355 -  -4.7  -3.59979   CTGTTCGATGCCAAA             GAGCAGG CGTT CCCGCGC              ACGGCCAAATATATC  54 177
JH254_RS03960 NONE
JH254_RS03955  803674 ..  803692 - -13.1  -5.06414   TGCGGGCAAGAAAAA             GCCCGCC ATAGG GGCGGGC             TCAAGGAGGTGGGCT 100 49
JH254_RS03950 NONE
JH254_RS03945  799251 ..  799269 -  -4.5  -3.65068   AGAAAAAGAGGACAA             GGGGTCA GTGGT TGACGCC             CGCCAGGGTGAGCAG  54 11
JH254_RS03940 NONE
JH254_RS03935 NONE
JH254_RS03930  794812 ..  794829 - -14.1  -3.34398   GCCTCGTGTCAAACA             GGGGGCC GGGT GGCCCCC              ATGGCCAGGCTGTCA  83 38
         eco  794105 ..  794126 - -10.1  -4.74103   CTCGGAAGCTAAAAA           TAAGGCGCC GTAT GGCGCCTTT            TTGTCATCATGACTG  91 64
JH254_RS03920  793522 ..  793532 -  -6.8  -2.50816   TCGGTATCCATTAAT                 CGAG GGA CTCG                 TCGCTGCCGCCACCG  50 10
        hdfR  792551 ..  792566 - -11.8  -4.56358   GATATCCATACAAAA              GGGGCC TGAT GGCCCC               TTTTTCATGTTGTTT  95 101
JH254_RS03880 NONE
        glpK  781542 ..  781565 - -16.8  -5.03314   GCGAGCGCCAAAAAA          GAGGCCGACA TCGC TGTCGGCCTC           TTTGCTTTTTTCATC 100 64
JH254_RS03865 NONE
JH254_RS03860  779528 ..  779540 -  -3.3  -3.16683   AGGTGAGTGCAGCAA                TGTGG CCT CCCCA                TGGCTGGTCGTGGTG  43 70
JH254_RS03855 NONE
        dkgB  778148 ..  778170 - -19.2  -5.60993   TTGGGGACAAAAAAA           GCGGGAGGCA TTG TGCCTCCCGC           TGGTGCTGAAGAATG 100 101
JH254_RS03845  776644 ..  776664 - -16.9  -5.14563   TTGCCCATGAAAAAA            GGCCGACAC AGG GTGTCGGCC            TTTTGCTTGCCCGGG 100 43
JH254_RS03825  772202 ..  772218 - -15.1  -4.07885   CACTCGCTTGCAAAA              GGGCCCG TTA CGGGCCC              TTGTCGTGTGAGGCG 100 16
JH254_RS03810  770244 ..  770267 - -15.2  -4.07568   CCGGCGGTGCGAAAA          CACGCCCCGG CTGC CCGGGGCGGG           ACGGGTCACATGTGC 100 31
        rsmS  770015 ..  770031 -  -3.5  -2.62184   TGGGTGCTGACATGA              TGCCTCC TGC GGGGGCG              CTCAGGCCTCCCGAC  42 27
JH254_RS03800  769117 ..  769166 - -15.6  -3.14132   TCTGGCCCTCATCAA GCAGGGGCGCG-GCCAGGGGGAG CCCAT CGCCCGCTGGCGCGAGCCCCTGG CCTGGGTTGACAGCC  83 404
JH254_RS03790 NONE
JH254_RS03785  766781 ..  766798 - -12.7  -3.35996   CACCCTGATGCACAA             CACCGGC CAAG GCCGGTG              TTGTGCTTTCTGGCC  78 63
        gdhA  763758 ..  763790 - -22.1  -3.07816   CCTCGACGCATCTAA      CGCAACAGGGCAGCC ATG GGCTGCCCTGTTGCT      TTGGGGGACGTTTCG 100 53
JH254_RS03770  763122 ..  763152 -  -4.4  -3.01712   GCGGCGCCTTCAAGA       TGGAGCCCATCACC TTC GGGGCCGGGCGCCG       GGCCCTGCGCTTTGG  45 306
JH254_RS03755  759129 ..  759149 - -18.3   -4.3586   TGACCCAGATCAAAA            CGGCTCGCC ATT GGCGAGCCG            TTTGCTGTTTAGTCG 100 42
JH254_RS03745 NONE
JH254_RS03740  755076 ..  755093 - -14.1  -4.81551   GACGGACACGAAAAA             CGGCGCC TTCG GGCGCCG              TTTTTGTTGCGCTGT 100 453
        pepT  750771 ..  750798 -  -6.2  -3.04461   TATCGACGTCGAACA        TGGGCAAGGCTC CGCT GAACTTTGCCCC         AGCTTGACGCCCCTG  51 104
JH254_RS03720  749007 ..  749028 - -15.9  -3.62275   ACCCATGATGTGAAA           GAGGGAGGC GCAG GCCTCCCTC            TTTCGTTGCGACGCC  91 44
JH254_RS03695  745007 ..  745028 - -10.1  -2.62396   CACGCTGGCAGATGA           GCCAGCAGG ATCA CCTGCTGGT            GGCCGAGCTGATGCC  62 59
JH254_RS03685  742645 ..  742666 - -18.7  -3.34962   CGGCACAGCGCAGAA           GGCCCCGCC AATC GGCGGGGCC            TTGTCGTTTCTGGCT  95 211
        moeA NONE
        moeB  737673 ..  737692 - -13.6  -5.72616   AGGTAGATAAAAAAA            GCCGAACC CCGG GGTTCGGC             TTTTTTGTGGGCGCT 100 43
        narQ NONE
        narL  722171 ..  722213 -  -8.3  -2.80579   TGGGGAAAAGAAGAG GGGGCCAGCAAGGAGGCAC GGATG GTGACCCCTTGCTGGCAGG AGGCCTGGACCTCAG  57 37
JH254_RS03560  718799 ..  718822 -  -6.2  -3.12668   CAGGGCGAGATGTAA          GTATTGATGTC ATT GACAT-AATAC          GAGTTAAAAATGGAC  51 289
JH254_RS03535 NONE
JH254_RS03530  710990 ..  711000 -  -4.6   -2.9953   TGAATGACAATCAGA                 GCCG CAT CAGC                 TGACGGAATGCCTTG  46 10
JH254_RS03525  709631 ..  709652 - -17.3  -3.70902   CCCTTGACATGCAAA           GACCCGGGC CAAG GCCCGGGTC            TTTTTTTATGACTTG 100 55
JH254_RS03510  705626 ..  705646 - -18.3  -4.66537   GGCGCCAATAGAAAA            GGCCCTGCC AAT GGCAGGGCC            CCTGATTTTTCAGAA 100 55
JH254_RS03505  704751 ..  704765 -   -10  -2.64416   GACCGGGATGAGAAG               GACGTC AAC GACGTC               GACGCCTGATATTCA  62 38
JH254_RS03495  702083 ..  702093 -  -5.4  -3.53811   TGTACTGTCTCTAAA                 CTTG AAT CAAG                 GCAATCTGTGTGAAC  54 67
JH254_RS03490 NONE
JH254_RS03485  701829 ..  701879 -  -9.9  -3.59627   AGCAAACTTCGTAAA GAAGTCAAAGGCATACATTGAAC GACAT GTTCAACTCATGGCTTTGTCTTC TGACAAATACAGTAC  72 45
JH254_RS03480 NONE
         rrf  698545 ..  698565 -  -5.4  -3.62032   ACACTAACCGGTAAA            GACCACGC TCAAT GCGTAATC            TAAAATTGGGTGCCT  56 37
JH254_RS03470  698424 ..  698441 - -12.7   -5.4251   GGCAGATACAAAAAA             GCCTCCC GATT GGGAGGC              TTTCTTATTTAATGG 100 38
JH254_RS03450  694709 ..  694726 - -12.7  -5.72616   ACGGACACAAAAAAA             CCGGAGC AGCT GCTCCGG              TTTTTTTATGCCCTC 100 83
JH254_RS03415  688740 ..  688752 -  -9.1  -2.75844   GCCGCCACGCCAAAT                GGGGA AAA TCCCC                GCCCTATCACAAAAT  60 245
JH254_RS03410 NONE
JH254_RS03405 NONE
JH254_RS03400 NONE
JH254_RS03395 NONE
        nqrE NONE
        nqrF NONE
JH254_RS03380 NONE
        nqrM  681394 ..  681417 - -18.2  -5.37043   ATGCCACATAAAAAA          CGAGCCGACC CAGG GGTCGGCTCG           TTTCGTTGCAAGGCT 100 63
        dinB NONE
JH254_RS03360  677606 ..  677630 - -10.1  -3.61398   CCTCTGCGGGAAGAA          GGGCTAAATCA GGT CGATTTAACCC          AGTCTGTCATCTGAA  72 88
JH254_RS03355 NONE
JH254_RS03350 NONE
JH254_RS03345 NONE
        rlmM  674274 ..  674291 - -12.7  -5.76633   CCAGACACAAAAAAA             CCGGACG TCGC CGTCCGG              TTTTTTCATGCCCTG 100 55
         syd  664476 ..  664507 -   -21  -4.82901   CGGCCCCCATAAAAA      GAGAGGGCCTTGCC AGAT GGCAAGACCCTCTC       TCATCCTGCTCATCC 100 49
JH254_RS03270 NONE
        truC  660102 ..  660150 - -11.2   -2.6063   TTGAGCCATAAGTCA TTCCTCTGA-CGGACC-TGGCCTA CAG CATGCCACAGCCCGGTCAGAGGAA ACAGATGAAGACTGA  67 42
JH254_RS03260  659487 ..  659519 - -12.8  -4.18506   TGAGTCCCAAAATAA     TG-CTCCCCCGTCAG CAGG CTCACGGGGGAGACA      TTTAAAATATGCGCC  91 48
JH254_RS03255  657650 ..  657669 -   -15  -4.99043   TCCTGAGAAACAAAA            CTGCCCCC ATAA GGGGGCAG             TGACTAACTTAACTG 100 51
JH254_RS03250  656576 ..  656595 - -10.7   -4.7497   TCTACCGATTAAAAA            GGCCTCC AACAAG GGAGGCC             TTCAATAAATACCAA  95 60
        ptsG  654721 ..  654738 - -12.7  -4.72272   GGCGGGCAGCAAAAA             GGGAGGC TTGT GCCTCCC              CTTTCGGAACTCGGT 100 54
        rpsB  648287 ..  648307 -   -14  -4.35604   TGAATTGACAAGAAA            CAGGGGCC ACAAG GGCCCCTG            CTAACCAATTACATC 100 76
         tsf  647325 ..  647346 - -15.9  -4.03234   TCCTGGTCATATAAA           GACCGCGAC ATAA GTCGCGGTC            TGGGGAAACGGAAAA 100 51
        pyrH  646542 ..  646558 - -10.1  -3.41878   TGGCGTAATGGACAA              GCGAGCC TGG GGCTCAC              ACTTGCCTTACTTGC  70 33
         frr  645864 ..  645890 - -15.9  -4.84918   CCCACAAAGACAAAA         GCGCCGTGCAG GGGCA CTACACGGCGC         TCGTAATATACCTGT 100 48
        uppS  645043 ..  645062 -  -3.4  -4.72007   TTTTAGCAAAAGAAA            CCTCTCTC TTGG GAGCGGGG             TTTAGCCGGTCTGTT  70 27
JH254_RS03195  644136 ..  644167 -  -2.2  -3.07344   TGATTGGGTAACAGA      CTGATG-GAGCGGGA CGC TCCCGGGATCATCAG      TGCGCGAAACATCAA  42 37
        ispC  642909 ..  642923 -  -2.1  -2.78384   CTGGCTGCCACCACA              GTCCGT TCAT ACGG-C               AAGCTCCTTTATCAG  39 17
        rseP NONE
        bamA NONE
JH254_RS03175 NONE
        lpxD NONE
        fabZ NONE
        lpxA NONE
        lpxB  634875 ..  634892 - -10.5  -4.41047   AGCCTTGAATCAAAA             CCGGCCC CGCA GGGCCAG              TATCAGCACAACATC  88 66
        rnhB NONE
        dnaE  630723 ..  630733 -    -4  -3.39803   GACTCATAGGGACAA                 TAGA TCC TCTA                 ATCAAAAACCAATTC  50 23
        accA  629726 ..  629743 - -12.7  -5.60993   TCGCCCATAAAAAAA             GTCCCCG CATG CGGGGAC              TTTTTATTGGAAACG 100 46
JH254_RS03125  625450 ..  625465 - -11.8  -5.96219   TACCCATAAAAAAAA              CCGCCC CGGG GGGCGG               CTTTCTCACAGGGAT 100 52
        yjeH  624056 ..  624072 - -15.1  -4.00445   GACCAGCAACAACAA              GCCCCGC ACT GCGGGGC              TTTTTTCGGGAGTTA  95 38
        tilS  617243 ..  617257 -  -8.5   -4.1552   TACGCCCGCAAGAAA               GCCGG GGGCT CCGGC               CTGCCCGAATAGGGC  73 68
JH254_RS03085  614280 ..  614308 -  -8.1  -2.62933   CAAGCTGGGATACCA        GGACGCGCTGG ATCACCG CCAGCGCATCG        AGGCCTTCCTCGACC  53 112
JH254_RS03060  609724 ..  609742 -   -16  -5.06414   TGGCCTGAATAAAAA             GGGGAGCC GAT GGCTCCCC             TTTTTTGTCTTGCTG 100 50
JH254_RS03030 NONE
JH254_RS03025  601481 ..  601498 - -14.1   -4.7497   TTCACCCATGAAAAA             GCCCGGC ACGG GCCGGGC              TTTTCACTCTGTGGC 100 46
JH254_RS03020  600819 ..  600842 -  -3.1  -2.84795   AAACTTTGAGGAAAT          CCCGACTCAC CAGCT GCGAA-CGGG          GCCTGTATCCAGGTG  41 8
JH254_RS03015  600423 ..  600436 -  -9.5  -5.52023   ACGAGCAACAAAAAA               GCGCC ATAC GGCGC                TTTTTTGTTGGGCAT 100 59
JH254_RS03000 NONE
        zipA  594183 ..  594202 -   -10  -5.38054   GGGCAGAAACAAAAA            TGCGGCAC CGGG GTACCGCA             CTTTTCATTGTTCAA 100 54
        ligA  592084 ..  592101 - -14.1  -3.97947   CCCACCTACGACAAA             CCCGGCC AGTA GGCCGGG              TTTGTCTGCTCAAAC  95 49
        nrdD  588483 ..  588507 -  -4.9  -3.53012   CCTCCCCCTTCGAAA          GGGGGAGGA GCTTCTT TGCCCCCCC          TGCCAAGGGGAGGGC  52 60
        nrdG NONE
JH254_RS02970  587656 ..  587675 - -11.4  -5.81412   GGCAGGCAAAAAAAA            GCCAACCC CGGA GGGCTGGC             CTTGTGATCTCTCAC 100 44
JH254_RS02965  587143 ..  587163 - -18.3  -3.84266   ACAGCCCACACGAAA            CACCCCGGC CTG GCCGGGGTG            TTTGTCATTTCACTT 100 30
JH254_RS02940 NONE
JH254_RS02935  581394 ..  581411 -  -8.4  -4.86731   CGGGGCGAAACAAAA             GGGAGC TCAAAG GCTCCC              TTTTATCTGCGCGGC  89 91
JH254_RS02925 NONE
JH254_RS02920  578893 ..  578914 - -14.5  -3.80573   GCCAGCACCATGAAA           GAAGGGAGC CTCG GCTCCCTTC            TTGCTGCCCTCGTCA  91 80
JH254_RS02910  577064 ..  577081 - -14.1  -3.35679   TCCCGTGATCCACAA             GGGCGCC TGCA GGCGCCC              TTTTTCATGCGGTTC  83 39
JH254_RS02900  573297 ..  573308 -  -3.6  -4.65168   ATCACACCTGAAAAA                GGGC TTTT ACCC                 TACACCTTGAAGCGC  69 278
JH254_RS02895  571944 ..  571967 -    -3  -3.01726   TCTCCTCAGATAAAT          GATGGGGC GCATGATA GCCCCGCC           CGGCCATGGGCTCCA  42 49
JH254_RS02890 NONE
        phoB  570673 ..  570719 - -12.9  -3.47361   TAGAGGCAGCAAAGA GCCGGGTCCAATGCCCGCCGGC AGGC GCTGGCGG-CACTGGCCCTGAC CTAGAGACGGGTCGA  79 26
        phoR  569303 ..  569319 - -13.7  -5.14563   GCCCGGATGAAAAAA              GGGCTGC GAT GCAGCCC              TTCTATCGTTGCTAA 100 58
JH254_RS02875  568062 ..  568080 - -11.7  -4.45544   GCGCACCAATGAAAA             CGAGCCC GCATG GGGCTCG             TTTTTCTGCAAGGGC  91 49
JH254_RS02865 NONE
JH254_RS02860  565367 ..  565381 -    -5  -2.76492   GGAGCCAGCTCAAAG               CAAACG GAA CATTTG               TCGTTGTTGGCAAGG  47 5
JH254_RS02855 NONE
JH254_RS02850  563556 ..  563569 -  -5.9  -3.05498   GACGTCACAGAGAGA               GGCAC CATG GCGCC                GCACGGTCTGTATCA  52 38
JH254_RS02845  563428 ..  563438 -  -6.8  -3.05498   GACGTCACAGAGAGA                 GGCA CCA TGCC                 GCCGCACGGTCTGCA  54 41
JH254_RS02840  563300 ..  563313 -  -5.9  -3.05498   GACGTCACAGAGAGA               GGCAC CATG GCGCC                GCACAGTCTGTATCA  52 38
JH254_RS02835  563169 ..  563186 -  -4.1  -4.32049   GAGAAGGGAGCAAAA             CAG-GGCA CCA TGCCGCCG             CACAGTCTGTATCAG  63 37
JH254_RS02830  562351 ..  562378 -   -20  -4.56597   TGGGCGGTCCAAAAA        CAAACGGCGACC TCAG GGTCGCCGTTTG         CATCACGCCAGCCGG 100 42
JH254_RS02825  561337 ..  561347 -  -2.4  -2.79831   GCAAGGCGTACCACA                 GCCC GGA GGCC                 ACGGTCAGACAGAAC  39 54
JH254_RS02820 NONE
JH254_RS02815  559782 ..  559808 -  -5.7  -4.64861   TTTTTCGAAAATAAA         TCGGCTGCACC GCATT GGGGCAGCCAT         TTCTGCTGACAACTG  75 204
JH254_RS02810  558477 ..  558493 - -15.1  -2.81476   AGCCAGGGAAAACAT              GGGGGGC CAG GCCCCCC              GGTGACTGTCGACTC  81 39
JH254_RS02805 NONE
JH254_RS02800 NONE
JH254_RS02795  555138 ..  555152 -  -8.6  -2.51547   TCGCTATATCAAGAG               CTTCCA TCA TGGAAG               TTTCATGGTTGAAGC  53 269
        yfcD  554347 ..  554370 -  -8.8  -2.53164   CCATCGAGCAGCAAC          CAAGCGATCG GGGG CGAACGCCTG           TCGCCCCTATTTCTG  58 32
JH254_RS02780  553701 ..  553723 - -17.8  -2.85297   CCACGGCAAACACGA           GAGCCAGGCA AGT TGCCTGGCTC           CATCCAAACGCGGCC  88 97
JH254_RS02775  552660 ..  552683 - -18.2  -5.24129   CCCGCGCACAAAAAA          GAGGGGACGC CGCG GCGTCCCCTC           TTTCATTTCATCACC 100 44
JH254_RS02765  549077 ..  549096 -  -9.3   -5.2696   GTAAAATGCAAAAAA            GCCACGA TGAGCG TCGTGGC             TTTTGCGTATTTCGC  95 158
JH254_RS02750  544873 ..  544885 -  -6.2  -2.90075   CCCTCTTCAATCAGA                GGCG GGGTG CGCC                GGCCATGCCGACCCT  51 356
JH254_RS02735 NONE
JH254_RS02730  540636 ..  540653 - -11.3  -5.24129   GCCGTGCACAAAAAA             GGGATGC CGAG GCATCCC              TTCTGCGTGTCTGTC 100 50
JH254_RS02705  535456 ..  535474 - -11.7  -5.72622   TTGATAAATAAAAAA             TGCCGCC TCGAG GGCGGCA             TTTTTATCAAGGTTG 100 48
JH254_RS02700  533901 ..  533918 -  -6.9  -5.28983   GGTAAAAGACAAAAA             GAGCGCC AATA GGCGCTT              TTTTGTTTCGGGTTA  89 47
JH254_RS02685 NONE
JH254_RS02680  526949 ..  526978 - -23.7  -3.16564   CTCCGATCTCATCAA       CAAGCAGGGCGCC CATT GGCGCCCTGCTTG        CTGTCATCCGGGTCG 100 46
JH254_RS02675  524400 ..  524417 - -12.7  -4.91657   AACCAATAAAACAAA             GGCGACC ATCC GGTCGCC              TTTTCTATTTCTATC 100 59
JH254_RS02620  511693 ..  511716 - -14.6  -5.14563   GCCGTGATGAAAAAA          GAAAGGCCCC TAAG GGGGCCTTCC           AGTGTACTCAAATCA 100 83
JH254_RS02615  511151 ..  511195 -  -7.2  -2.52464   CCGGCTGCCAATCTA GCA-CTCCCGGGC-GCTGGCG TCACAG CGCC-GCTGCCCGGAAGGTGA TCCGGCGACGGATCT  53 56
        glnE  508190 ..  508213 - -18.2  -2.70932   GCCTCTCGTCAACGA          GAAGGGGCGC CATG GCGCCCCTTC           TGCTTATTCTCCCAG  86 29
JH254_RS02590 NONE
JH254_RS02585 NONE
JH254_RS02580 NONE
JH254_RS02575 NONE
JH254_RS02570  498270 ..  498291 - -12.9  -5.95539   TTGCAAACAAAAAAA           GGCGCCACC TGGA GGGGGCGCC            TGGAAAGGTCAAACC 100 110
JH254_RS02565 NONE
JH254_RS02560  496213 ..  496223 -  -3.2  -3.07043   GGCAGCAGGGCAAGA                 GCCA TCA TGAC                 AGGCACGCCTGATCC  43 19
JH254_RS02555  495803 ..  495826 -  -3.2  -2.78216   CATGGTCATGAATGA          CTC-CTTTCAA TAT TTGAACGAGAG          GATCTGTCTCCCGTG  41 90
JH254_RS02550  495462 ..  495479 -  -4.1  -2.61831   TTCAGCCGAAAAATG             GCAGG GGATTGAT CCTGC              TGTAAATTTCGTTTT  42 130
JH254_RS02545  494881 ..  494900 - -13.6  -4.82901   TCGGCCCGACAAAAA            CGGCAACC GTCT GGTTGCCG             TTTTTCATGGTTCCA 100 48
JH254_RS02520  491686 ..  491705 - -13.6  -3.49425   AACAAGAAGGCAGAA            CGGCAACC CCAG GGTTGCCG             TTTTTTTTATGGGTA  82 78
        argE  484505 ..  484519 -  -4.2  -2.59748   TAGGGGGACAATCTA               CCCAGA TTG TCTGCG               CAAGGTCAAATAACA  43 116
         ppc  481727 ..  481742 - -11.8  -4.84527   GGCAGAGATGAAAAA              GGGCGC CGGG GCGCCC               TTGTTTGCAACGGTC 100 46
        ybaK  479434 ..  479455 - -15.9  -3.14026   GACATCCAGACGCAA           GAGGCGCCA GTCA TGGCGCCTC            TTTTGTTTGTTCAGT  85 36
JH254_RS02455  475912 ..  475928 -  -9.4  -2.78463   ATTGTGCCCAGTATA              GACGGG CCATT CCCGTC              GACACAGCGCTATCA  60 74
JH254_RS02450  474978 ..  474989 -  -3.6  -3.34962   CCTGACAGGGGAGAA                CCGG CGAG CCAG                 TCAGGGAGCGATACC  48 26
JH254_RS02435 NONE
JH254_RS02430  472037 ..  472062 - -19.1   -2.7674   GACACGATGCAATGA         GAAGAGGCGCC CCAG GGCGCCTCTTC          TGTTATCGGGTGGCG  93 44
        metJ  467775 ..  467803 -  -8.8  -3.48924   GGAGGCGGCAGATAA        GCATGACGCGGC ACCGG GCCGCGTCATTG        AAAGGGATGCATCGT  66 59
JH254_RS02410  467034 ..  467053 -    -7  -3.34398   TGTCTTCGGCAAAGA            GCCGACCG ATTA CGGCAGGC             AGCCGTTTTGTCGGC  56 15
JH254_RS02405  466557 ..  466589 - -22.1  -3.78775   GCCGTCAGCATCAAA      CAAGAGAGGCGACCC CGG GGGGCGCCTCTCTTG      TTTCTGCTCTCTGGT 100 56
        yrfG  462547 ..  462565 - -11.7  -3.33162   GAGCTTATGTGACAA             GGCCCTC GTGAA GAGGGCC             TTGTGCGTGTCAGGT  74 35
JH254_RS02375  460345 ..  460366 -  -5.9  -3.61398   GCGCCGGGGCAAGAA           GCAGTACCAC CTG GTGAT-CTGC           TCATGAAGGGGTGAG  58 26
JH254_RS02365  458128 ..  458143 - -11.8  -2.71364   CCATGGTTTGAACCA              CCCCGC CCCG GCGGGG               TGGTGTCGTTATGGG  70 34
        hslR  445769 ..  445798 -  -6.6   -3.6135   AAACACATTGTTAAA      CAGGTGGTTAGGAA CTAA TTCCT--CCACCTG       TCGTCATAAAGGGGC  60 53
        hslO  444815 ..  444831 - -10.8  -3.76952   GTTATTTAAGTTAAA              GGCGGG TTTTG CCCGCC              TTTGATTAGTGTAAC  77 31
        pckA  443009 ..  443033 - -16.5  -5.41143   CATCGGCCAAAAAAA          TACCGGCCAGC AGG GCTGACCGGTA          CGGGATTGTGAGACG 100 54
JH254_RS02280 NONE
JH254_RS02275  440360 ..  440385 - -13.3   -4.0371   CATGCCGCAGATAAA         GAAACAGGGCC CGCA GGCCCTGTGTC          ATCAGAGGAGGCTGG  95 27
JH254_RS02270  439729 ..  439747 -  -3.8  -2.91274   TTTACGCCAACCAGA             TTGCGCAT TAA ACCCGCAA             AGTGTAACCAATTAT  44 75
JH254_RS02265  439144 ..  439161 - -11.3  -4.64766   TGCAGAGCGCAAAAA             GGTGAGC CCGG GCTCACC              TTTTTTATGGCAGTT  95 59
JH254_RS02255 NONE
JH254_RS02250  435978 ..  435998 - -18.3  -5.37345   GCGAAGCATAAAAAA            GCCCGGGTC AAT GACCCGGGC            TTTTTGTCGTGCGGC 100 50
JH254_RS02240  432813 ..  432825 -  -3.3  -2.62616   GCAGGGTGGACATCA                GGAGG CCT CCTCG                ACCATGGGATCCGTC  40 10
        exeB  432058 ..  432077 -  -4.9   -4.7497   GTTATTGATGAAAAA            GGGGAGC TCTCGG GCTCCCT             CAGAATGGGCGCTGA  74 75
        mutY NONE
JH254_RS02225  430499 ..  430517 - -13.1  -2.76583   ATAAGATCCTCAAAC             CGGGCGG TGGGG CCGCCCG             TCACTGACTGGCCTG  74 113
        mltC  429347 ..  429371 - -20.1  -2.99871   GGCGACAGTAAATGA          GAAGGGCGCTC CGG GAGCGCCCTTC          TTGCATGCCATCAGC 100 36
JH254_RS02210  427664 ..  427684 - -19.7  -3.01712   CCCCTGTCGGCAAGA            GGGCCGGCG AAG CGCCGGCCC            TGGCAGGATGGCCTC 100 43
        ompA  426345 ..  426368 - -12.4  -5.71983   GGAAGCATAAAAAAA          GACGGGAGGC CATG GCCTCCCGTT           TTGTTTGGGGTCGTC 100 42
         hfq  422187 ..  422209 -  -9.8  -3.27297   ACTGAGTAACGAAGA           CGAGCGGGTC AAC AACCTGCTCG           GGAGAGAAGCCCCAC  68 129
        rsmC  417404 ..  417419 - -10.4  -5.40072   TTGCTGCGAAAAAAA              CACCCC TAAA GGGGTG               GTAAACGTTTTCTTG 100 101
        glgC NONE
        glgA  414643 ..  414659 -  -4.3  -2.94924   TGTTGACGGATAAAG              GCGTGCC AAG GGCACAA              AACTTCAGCAATCGG  46 43
JH254_RS02150 NONE
JH254_RS02145 NONE
JH254_RS02140 NONE
JH254_RS02135  414032 ..  414046 -  -4.2  -3.53224   CAGCTGGTTTTTAAA               TGCGGT TGG AGCGCA               TTTTCTGCGTTTTAC  52 53
JH254_RS02130  413881 ..  413904 - -16.8  -4.91977   CATGAAAACACAAAA          GGCCCGTTAC TCTC GTAACGGGCC           TTTGCAGAATGATGG 100 38
JH254_RS02125  413298 ..  413312 -  -5.8  -3.55084   TGGCAACACCAAATA               TGATAA TGG TTATCA               TTAATCTTTTTTCGG  58 257
        nhaC  411589 ..  411605 - -10.8  -4.55287   CGCACCCAGACAAAA              GGCGCC GTGAT GGCGCC              TTTGTCGTTGTTTTT  93 48
JH254_RS02110  410451 ..  410465 -  -5.8  -3.31263   ATGCCACGCTGACAA               TTAACA TCC TGTTAA               CCAGTCATGAGCGTA  54 159
JH254_RS02080  406052 ..  406065 -  -3.7  -3.01712   GGCCCCTGCTCAAGA               CGCCC GGCG GGGCC                ACGACCCAGGCCATG  45 472
JH254_RS02045  399219 ..  399243 -  -6.5  -2.80035   GAGAGATGAAGATGA         GAAGTCGGCG GTTTTA CGCC-ACTTC          GTAATAGAGCGGTGC  51 14
         bfr  398577 ..  398590 -  -9.5  -5.14563   GGTGCCATGAAAAAA               CCCGC CTGG GCGGG                TTGGGATTGTCTCTT 100 55
JH254_RS02035  397870 ..  397892 - -10.6  -5.18371   CCCCATAAAAGAAAA           GAGCCGGA CATCTGT TCCGGCTC           TTTGCTGTCTGGCGT 100 44
JH254_RS02025  395831 ..  395851 - -15.5  -3.25942   ACCCCGTGAGATGAA            GGGCAGGAT GGG ATCCTGCCC            TTTCTTGTTGCGCCA  87 58
JH254_RS01960  381581 ..  381620 -  -8.4  -3.05384   TGCCCGCGCAGGCAA  CCGTTGAGTCAGGCCGCC TCGG GGCGGCCTGGTTGATCAG   TGGGCCCTGCGCTCC  60 22
        treR  377920 ..  377930 -  -4.6  -4.83615   CACTGGTCACAAAAA                 GCGC AAA ACGC                 CGGGAATGGAGGAAA  74 48
        treB  376303 ..  376322 -   -15  -4.54821   AGGGCAACGATAAAA            GGCGGAGC CAGG GCTCCGCC             GAGGTTGTGTGGATC 100 39
        treC NONE
JH254_RS01930  373935 ..  373955 -   -14  -3.34609   TCAGGGAAAGGAACA            GGGGCAGG TACGG CCTGCCCC            CTCTGTGTCAGCCAG  83 33
JH254_RS01920  372062 ..  372095 -  -8.2  -3.02144   CCAGGTGGTGGAAGA    GGCG-AGCG-AGCATG TCGC CAAGCTGCGCTTCGCC     CATGCGGAGACCCTG  57 375
JH254_RS01910  370097 ..  370127 - -22.7  -2.73364   TGCCGACGGCAACGA       CGACAAGGGCGCC TTGAT GGCGCCCTTGTCG       TTGATCTCTCGCCTG 100 82
JH254_RS01890  365940 ..  365961 - -18.7  -4.72272   CCTCCTGACGAAAAA           GGCCCCGCC AGCT GGCGGGGCC            TTTTCATTGCAGAAC 100 45
JH254_RS01880 NONE
JH254_RS01875  361965 ..  361977 -  -3.3  -3.78953   ATCTGGATCATGAAA                TCTCG TCG CGAGG                GAACCCTGGCGGGGA  54 118
        znuC NONE
        znuB  358612 ..  358628 -  -7.9  -4.09243   GAGACCCGGGGAAAA              CGAGCCT CTC AGGCGCG              TCTGAACGGGCTGGG  71 135
JH254_RS01845  356695 ..  356707 -  -7.7  -3.14132   CCTCTGGCTCAGGAA                GAACC CCT GGTTC                GAGCAGGCGGTGATC  56 85
        rarD NONE
JH254_RS01830  354721 ..  354731 -  -2.4  -2.52516   GCCCTCATCATCAAG                 CTGG CGC CCTG                 GTTGCTGGTGGTGCT  37 146
JH254_RS01805 NONE
JH254_RS01800 NONE
JH254_RS01795 NONE
JH254_RS01790  348761 ..  348784 - -16.8  -4.72272   CCCTCTGATGAAAAA          GAGCCCGGTA GCGA TACCGGGCTC           TTTGCATCTCTGGCA 100 50
JH254_RS01780 NONE
JH254_RS01775 NONE
JH254_RS01770 NONE
JH254_RS01765  345456 ..  345485 - -12.1  -4.59773   TGCGAGCTGCAAAAA       TGACAACGCCCGG CAAG CCGGGCGTTGGAA        CAGCGTGAAGGGGAA  95 50
JH254_RS01755 NONE
JH254_RS01750  344018 ..  344034 -  -9.4   -4.7078   TGAATTATTGAAAAA              GGAGCC GGCAA GGCTCC              TTTTTTGTGATGGGC  86 71
JH254_RS01735  342356 ..  342371 - -11.8  -3.72909   GTAATTAATATAGAA              GGGCGC GAAA GCGCCC               TTTATTAAAATTAAA  83 48
        tolC  329200 ..  329217 - -12.7  -4.87037   AACAGAGATGAAAAA             GGCGACC CCGG GGTCGCC              TTTTCTCATGGTGTG 100 49
        lpxL  326399 ..  326417 -   -16   -5.4833   GCAGCCAACAAAAAA             GCCCTCGC AGT GCGAGGGC             TTTTTCATGGGGCGC 100 95
JH254_RS01645  321719 ..  321749 -  -5.4  -3.08738   AAGAATGCTACTCAA      GGGAGC-GCCAGA GGACAA CCTGACCGCCCCC       ATGGAGGGGGCCCGT  50 182
JH254_RS01640  320754 ..  320768 -  -2.8  -3.54424   TTTTACCCCCCCAAA               GCCA AGGTGAA TGGC               CCCCTCAACGGGGTT  50 30
JH254_RS01635  318622 ..  318638 - -10.8  -5.96219   CAGCCATAAAAAAAA              GCCCGC GGGAT GCGGGC              TTTTGCAGAGCAGAC 100 52
JH254_RS01630 NONE
JH254_RS01625 NONE
JH254_RS01620  314258 ..  314275 -  -6.9   -2.9155   GGGGGCAAGATGACA             CCCGCCA GGCG TGCCGGG              GAGAGCCGCTCAGAT  53 40
JH254_RS01615 NONE
JH254_RS01610  312056 ..  312071 - -10.4   -4.5442   GCCGGAATGAGAAAA              GGCTCC CTCG GGAGCC               TTTTTCGATGGGTGC  93 41
JH254_RS01595  309939 ..  309969 - -12.5  -2.75455   AAAAGGGAAATGAAT       GGCTCTCCCCGGC GGTGG GCCGGGGAGAGGG       TGATCAGCTCAGCTT  74 29
JH254_RS01590  309566 ..  309579 -  -4.5  -3.01712   GGGGCCGGGGGAAGA               CCGGCC CGG GGC-GG               CGTTACTCGTCGATC  46 28
JH254_RS01585  308776 ..  308792 -  -6.5  -3.76048   GCTCAACGAAGAGAA              GGGCAAC ATG GTTTCCC              GCTTCGGTTTGAAGC  62 209
        dbpA  305710 ..  305730 - -16.9    -3.889   GCGAATGATATGAAA            CAGGCGCCT GTC AGGCGCCTG            TGGTCTGGCCGGGCG 100 52
JH254_RS01570  305231 ..  305249 -  -3.1  -3.60098   ATCGGGGATTTCAAA             CGTTATC TGGCG GATCACG             TCTTCAGCGAGCTTC  51 157
JH254_RS01560  303120 ..  303139 -   -15  -5.06414   GTTTGGCAACAAAAA            GGGCTCCC GAAC GGGAGCCC             TTTTTGTTGATATGT 100 185
JH254_RS01550  300646 ..  300667 -  -6.5  -4.16016   GGAGTCGGTAAGAAA           CGCTATCCC AGCA GGGAGAGCA            CGTTGGCGATCTTGT  68 6
JH254_RS01545  298876 ..  298888 -  -2.6  -2.94099   CGGCGGGATCAGAGA                CCAC GGATA GCGG                CTCCCAGTGCCTTGA  41 6
        menH NONE
        menB NONE
        menC NONE
        menE  294873 ..  294890 -  -9.1  -5.23765   CAAACAACATAAAAA             CAGCCCC AAAG AGGGCTG              TGTTGATAGCAAGGA  95 64
JH254_RS01520  291953 ..  291978 - -16.9   -3.8709   AAACGGCGCCATAAA         CAAGGGGCGAC CATG GCCGCCCCTTG          TCATAGCCGTCTCGT 100 43
JH254_RS01515  290875 ..  290898 - -18.2  -3.74693   TTTCACCTGATGAAA          GAGACCCGCC TGTT GGCGGGTCTC           TTTCATTGAGGGGTC 100 28
JH254_RS01500 NONE
JH254_RS01495  287801 ..  287824 -  -5.8  -3.92542   GGCAGCGTCAAAGAA          TGGGGGCCCA CTTG CGGGCCCCTT           TTTCATGCCGGTTAC  64 37
JH254_RS01475 NONE
JH254_RS01470  283132 ..  283152 -   -14   -4.7497   CTGATGGATGAAAAA            GAGCGGGC GTGGT GCCCGCTC            CTTCGTCGATTGGCT 100 40
JH254_RS01465  282380 ..  282400 - -12.5  -4.72188   CCAACGGAAAAGAAA            GCGCCCCGA TCA TCGGGGCGT            TTTGCGTGGTGTCGC 100 54
JH254_RS01455  280311 ..  280332 - -15.9  -3.53012   TCTTTTGGCGTTAAA           GGCAAGGGG TTGC CCCCTTGCC            ACGGGGCTGGCAGGC  90 53
JH254_RS01430 NONE
JH254_RS01425  275912 ..  275930 - -14.6  -4.31164   GGCAGACAACAGAAA             GGGCTCCA TGA TGGAGCCC             TTTTTCATGGTGGCG 100 43
JH254_RS01410  271188 ..  271221 -  -5.4  -4.90778   GCCACGCAAAGAAAA    GTTACTCGCCCAAGCCC GAA GGGC--GGGCGAA-AAC    CCTTCGAGGCCAGCG  80 462
JH254_RS01390  268047 ..  268067 -  -9.7  -4.19678   CGACATGCCAACAAA            TATGACGCC AGG GGCGCCACA            GGGGTATTCCCGCCC  83 96
JH254_RS01385  266872 ..  266902 - -19.8   -3.0464   AATACGCAGACAAAT       GAAAGAGGGCGACC CAG GGTCGCCCTCTTGC       CTGTTCACTGCGCCC 100 42
JH254_RS01375  265377 ..  265395 -  -5.2  -2.71712   CTTGTCTGGTCAAAG             GAGTCCCA TCA TGAGGCTC             AGAACCTCAGGGTCA  46 24
JH254_RS01370  264667 ..  264689 -  -8.3  -2.61383   ATCTGGACCGAGAAC           CCGCGCACC GGCGA GGCGGGCGG           CATCTATCTGTTCGA  53 154
JH254_RS01360  263825 ..  263840 -  -6.1   -4.3586   TTACCGACACCAAAA              CGGGA TCCCGC TCCCG               GCGGCGGTAACCTTG  72 233
JH254_RS01345  260008 ..  260035 - -15.7   -5.5112   CGGACCAACAAAAAA        GGCCATAGACG AGGCAG CGTCTATGGCC         TTGATTCATTCGCAC 100 311
JH254_RS01340  259066 ..  259091 - -20.5  -5.53288   CTGAACTCAAAAAAA         CGGCGCGCAGA GCAA TCTGCGCGCCG          TTTCTATTTCCCCTC 100 46
        glpX  256712 ..  256728 - -15.1  -4.64766   TGCAGAGCGCAAAAA              GCCCGGC AGT GCCGGGC              TTTTTGCTGCGGGAG 100 49
JH254_RS01325  256227 ..  256251 - -22.9  -4.91511   AGCCGACGATAAAAA          GGCCCCCTCGC AAA GCGAGGGGGCC          TTTTTCATGACTCCG 100 133
JH254_RS01285 NONE
        kdsC NONE
        lptC NONE
        lptA NONE
        lptB  248102 ..  248118 -  -6.5  -5.10461   GTCACCTAACAAAAA              TGAGGGG TGC CCCCTTA              CTATAGACTGAATTG  86 26
JH254_RS01260  246620 ..  246634 -  -2.1  -2.71712   TTTGTTTGCCTAAAC              CAGGCG TTTG CGC-TG               ATTGGATGGCGGGAT  38 5
         hpf NONE
        ptsN NONE
        rapZ NONE
         npr  244573 ..  244592 - -13.6  -4.90266   CTGATGAACGAAAAA            GCCAGCAG AAGT CTGCTGGC             TTGTCGGGATTTTGC 100 90
JH254_RS01175  232203 ..  232230 -  -7.1  -3.15999   CTGTTACAGACCCAA        TTGCTTATGGG GGCTCT CCCACAAACAA         CAAACGATGGCCTAC  54 238
        rplM NONE
        rpsI  231278 ..  231296 - -14.6  -5.84381   TTACCAATAAAAAAA             GCCTGGCA AAT TGCCAGGC             TTTTTTGACACTCCT 100 63
        petA  230441 ..  230459 -    -3  -3.35046   TGAGTTTGGCAAACA             TGGTCAGG CCT CCTTGCCA             TCGGCACCGACCAGA  46 10
JH254_RS01155 NONE
JH254_RS01150  228435 ..  228465 - -13.5  -4.27774   ATTAAAAAGCAGAAA      CGGCAATGAAG-CA TGTC TGTCTTCATTGCCG       TGCGTCATATTACTC  95 53
        sspA NONE
JH254_RS01140  227326 ..  227343 - -12.7  -5.86061   TGGCAGGAAAAAAAA             CGCAGCC TTCA GGCTGCG              TTTTTTATTTGATGA 100 30
        rsmI  222963 ..  222982 -  -2.1  -3.55761   GACGGACGGGGTAAA            CCGTCAA TTCCGG TTTACGG             CAATTAATAGTGCTC  48 29
        rnpB  222500 ..  222525 - -17.7  -5.07486   TATGGTTAATAAAAA         GAGCCTTGCGA TAAA TCGCAAGGCTC          TTCAGGAAAGAGGTC 100 37
        mraZ NONE
        rsmH NONE
        ftsL NONE
JH254_RS01090  218568 ..  218588 -  -5.3  -4.19258   ACACGCCATGGAAAA            CGCCCCG ACAGCAG CGGGGCC            GATGGAGAAAGCCGG  64 48
        murE NONE
        murF NONE
        mraY NONE
JH254_RS01070 NONE
        ftsW NONE
        murG NONE
        murC  209430 ..  209441 -  -2.2  -4.08767   TCGATCCCCGTAAAA                CGCGC CAT GC-CG                GCCACTTGCAGACCG  56 92
JH254_RS01050 NONE
        ftsA  207425 ..  207435 -  -3.2  -2.61429   CAAAATCTTTAGAAC                 TCGC CAC GCAA                 CCAGTTGCTGACCCG  40 8
        ftsZ  206206 ..  206234 -  -2.5   -4.3255   TCCTTAAGCAACAAA       CAAACCAGAGCC ATCAGA GGCT-TAGTCTG        CCTGCTTGCGCAGGA  60 18
        lpxC  205152 ..  205192 -  -6.9  -4.69214   GATGGAATAAACAAA  TGACAGGACGTCGGT GCGGAGAGATG ACCGACGTCCTGTTG  CACAGCTATCAGGCC  79 34
JH254_RS01030 NONE
        secA  201334 ..  201363 - -19.5  -4.07568   TCCTTGGTCCGAAAA       TGAATACACCGCC CGGA GGCGGTGTATTCA        TCATGGCAGGGTGTC 100 39
JH254_RS01020 NONE
        mutT  199678 ..  199691 -  -9.5   -5.1861   TTCACGATCAAAAAA               GGGCC CTCA GGCCC                TTTTTCGTTGGTATC 100 48
        ampD  191183 ..  191206 - -12.4   -4.8083   CAACAGCATGAAAAA          TGGCCCGCCC CATA GGGCAAGCCA           TTGATTCTAAAAACA 100 63
        pdhR NONE
        aceE  187421 ..  187446 - -16.1  -3.11732   TTTAAACCCAGGCAA         GGTCGCGCCGG ATAC CCGGCGCGACA          CTCAATCCTCTTACG  85 36
        aceF  185414 ..  185434 - -15.4  -4.95876   AATGAGAAGCAAAAA            GGGCGGGC TCTGG GCCCGCCC            TCTCACTTACAGGAC 100 32
        lpdA  183823 ..  183840 - -12.7  -5.27206   GACAGACAACAAAAA             GCCGCTC CATG GAGCGGC              TTTTCTTATGAAACG 100 50
JH254_RS00930 NONE
        acnB  176100 ..  176119 - -13.6  -4.35524   CCCTGAAATGGAAAA            TGCCGCGT CGAG ACGCGGCA             TTGTTATTTTCAGTG  95 57
JH254_RS00920  173946 ..  173964 -  -4.4  -3.01712   GCTGCTGTTCGAAGA             GCGGACCG GAC CTGTCTGC             CCGCCGGGCAAGGTG  45 409
JH254_RS00910  172696 ..  172707 -  -2.2   -4.4831   AGGCATGAAAAACAA                GACC CTAC AGTC                 GGGGGTGGATAGGGG  63 58
JH254_RS00905  171185 ..  171197 -  -3.3  -3.23692   CAGGAGGATGAGTAA                GCGAG TGT CTTGC                ATATCGGTCATGTCA  46 46
JH254_RS00900  169988 ..  170007 - -11.4  -4.85918   CATCACATAAGAAAA            GACCCGCA CGAG CGCGGGTC             ATATCAGCATATCAG 100 37
        mdtD NONE
        plsY NONE
JH254_RS00870 NONE
JH254_RS00865  165995 ..  166013 -  -4.4  -2.72511   GCTATCTGGGCAAAT             GGTGCCGG CTA CCGGAATC             GAACTGGTGACCTAC  43 6
JH254_RS00860 NONE
JH254_RS00855  165803 ..  165822 - -13.6  -5.46706   ATGGGAAAAGAAAAA            GCCCAGCA TTGC TGCTGGGC             TTTTTATTTGGCTCC 100 34
JH254_RS00840 NONE
JH254_RS00835  161701 ..  161720 - -13.6  -4.76644   AACAGGCATGAAAAA            GGGGAACC GCGA GGTTCCCC             TTTCGTTTGACCGAA 100 48
        pncC  157733 ..  157749 -  -4.4  -3.26545   TGCATACAGTATCAA              GCCCAA TTTAT TTGAGC              AGTGCCAGGAGTCCG  49 16
        recA  156563 ..  156582 -   -15  -4.17309   CACCATAAACAACAA            GGCCGGGT ATCA ACCCGGCC             TTTCCTCATTCCTTA 100 38
JH254_RS00810  155871 ..  155887 - -10.1  -3.53012   CCTTGGCGGGTGAAA              TAGCCCC CAA GGGGCCA              GCGTTTGGCAGCAGC  68 185
        alaS NONE
JH254_RS00795  151882 ..  151896 -  -2.8  -4.06055   ATGGTTGAAACTAAA               TCAATC AGG GATTGT               TTCCCAAGGGCTGCT  58 15
        csrA  151562 ..  151582 - -15.5  -5.26119   CCCTGAAAAACAAAA            GGCGACATC CGG GATGTCGCC            TTCAGGCAGCCATGA 100 47
JH254_RS00785 NONE
JH254_RS00780  151147 ..  151164 -  -8.5  -5.75599   CAAACGATAAAAAAA             GCTTACT CAAC AGTAAGC              CTTCCTTAGTGCCGA 100 79
JH254_RS00775 NONE
JH254_RS00770 NONE
JH254_RS00765 NONE
JH254_RS00760  150707 ..  150730 - -14.6  -5.60993   TCGCCCATAAAAAAA          CAGCCCCGAC TGAC GTCGAGGCTG           TCTGTATGGTGCGCC 100 32
        lptF  140872 ..  140886 -  -6.4  -3.36878   TGTATCTATCGAGAA               TGCCGA ACA TCAGCA               GAGACTCCCAGGTTG  54 46
        lptG  139689 ..  139706 - -12.7  -4.87291   GACGGCAACGAAAAA             GGGCACC CCGA GGTGCCC              TTTTTGTTGACCAGA 100 130
JH254_RS00710 NONE
JH254_RS00705  137401 ..  137416 -  -2.5   -4.7497   GCCAGTCATGAAAAA              GGTCA TCTGTT CGACC               TTTTGAACTGGCTGG  69 392
JH254_RS00700 NONE
JH254_RS00695 NONE
JH254_RS00690 NONE
JH254_RS00685 NONE
JH254_RS00680 NONE
JH254_RS00675  133915 ..  133962 -    -5  -5.77571   ATCAAAAAACAAAAA GGCACAAAACACACAAATTCCGG CAT CCC-ATTTTGTGTGTTTTGTGTA TTCCTGTGTTACCGA 100 151
JH254_RS00670 NONE
JH254_RS00665 NONE
         amt  128819 ..  128838 - -12.1   -5.4505   CGCCCCAATAAAAAA            CCGCCGG ACGGGG CCGGCGG             TATGACATTCATGGC 100 48
        rlmD  127141 ..  127158 - -11.3   -5.9873   CGACCATAAAAAAAA             CGACTCC CTCA GGAGTCG              TTTTTATCAGAGCCA 100 145
JH254_RS00645 NONE
JH254_RS00640  126323 ..  126339 -  -5.7  -3.40403   CTCGTTCGACTACAA              CAGCGTC ACT GGCGCCG              TGACCCGCCAGTTCC  56 14
JH254_RS00630  124830 ..  124841 -  -3.6  -3.34962   GGTCACATTTTATAA                GCCA CAAA CGGC                 CTGAACATCGTTTAA  48 100
JH254_RS00625  123373 ..  123401 - -19.7  -2.93089   CACCACCCCAAACGA        GAACGCCACAGCA AAT CGCTGTGGCGTTC        GTCTTTATCCTGTCA 100 52
JH254_RS00620  123021 ..  123039 - -13.2  -3.09516   CCGGGCATTAGTCAA             TGCCAGCA CCC TGCTGGCA             TCGCCTATTTCAGCC  75 120
        deoC  121940 ..  121959 -   -15  -3.01712   GGTGGGGGCTTAACA            GGGCGGAC AGCA GTCCGCCC             TCTCATCAACCTATT  82 39
        deoA NONE
JH254_RS00605  119261 ..  119282 - -10.1   -3.8766   GTACATTACAGGAAA           CCGGGGC-CC TGT GGCACCCCGG           GCAGGCGAACCGGCC  77 52
        deoD  118418 ..  118437 - -16.4   -4.4874   CGCAAAAATGCAAAA            CGGCGGCC CGAG GGCCGCCG             TTTTTTTATGCGCGA 100 47
        serB NONE
JH254_RS00580  113313 ..  113330 - -12.7  -5.60689   GGAGACAACAAAAAA             CGGGCAC GCAA GTGCCCG              TTTTTTGTCTATCAG 100 37
        radA NONE
JH254_RS21235 NONE
JH254_RS21230 NONE
JH254_RS21225  108482 ..  108500 -  -8.8  -2.77862   CAGAGCAATAGATGA             CTGGCTGG ATG CCAGACAG             GCGTTGCTGGTCGAG  60 197
        hupA NONE
JH254_RS21220 NONE
JH254_RS00550  107214 ..  107233 - -16.4  -5.29445   CCCGAACAAGAAAAA            GCCGGCGC CCCT GCGCCGGC             TTTTTTGTCACCACG 100 62
JH254_RS21215  106644 ..  106659 -  -5.4  -2.53382   ATTATCCGGAACTGA              CCATTG CCAT CAACGG               CGGGGTGACCAGTCT  46 54
JH254_RS21210 NONE
JH254_RS21205 NONE
JH254_RS21200 NONE
         zur NONE
JH254_RS00530 NONE
JH254_RS00525  104703 ..  104724 - -15.9  -4.10552   CTTGACCAAATGAAA           GAGGCCAGC ATTT GCTGGCCTC            TTTTTTGTTGGTGCA 100 71
JH254_RS21195 NONE
JH254_RS21190  103228 ..  103241 -  -6.7  -3.57263   ATGCTGACTGCTAAA               TGAGC GCCC GCTCA                AGACCAGTTCAAACC  60 325
JH254_RS21180 NONE
        srmB  101082 ..  101101 - -13.6  -4.40237   CAGCAGACAGCAAAA            CGGCCATC CTGG GATGGCCG             TTTCAACTGTGCTCG 100 47
JH254_RS00490   97187 ..   97220 -  -5.2  -5.44119   TTTACCTGAAAAAAA     GCACGA-CCGGGATG TTTCT CGCCCCGGCTCTTGC     TCATGAATAGTCACG 100 26
JH254_RS00485 NONE
JH254_RS00480 NONE
JH254_RS00475 NONE
JH254_RS00470 NONE
JH254_RS21135 NONE
JH254_RS21130 NONE
JH254_RS21125 NONE
JH254_RS21120 NONE
JH254_RS21115 NONE
JH254_RS21110 NONE
JH254_RS00450 NONE
JH254_RS21105 NONE
JH254_RS21100 NONE
JH254_RS00445 NONE
JH254_RS21095 NONE
JH254_RS00440 NONE
JH254_RS00435 NONE
JH254_RS21090 NONE
JH254_RS00430 NONE
JH254_RS00425 NONE
JH254_RS21085   86820 ..   86836 -  -5.1  -2.78715   AACGTTTGCACGATA              TCGGTTG CGC CAACTGA              CTGATTTGACACAAC  47 11
JH254_RS21080 NONE
JH254_RS00420 NONE
JH254_RS21075   84955 ..   84965 -  -4.6  -2.80816   GGTGCAGGCACCACA                 GACC ACA GGCC                 ACTCGCGCGGCTCCT  44 29
JH254_RS21070 NONE
JH254_RS21065 NONE
        glnK NONE
JH254_RS21060 NONE
JH254_RS21055 NONE
JH254_RS00400 NONE
JH254_RS21050 NONE
JH254_RS21045 NONE
JH254_RS21040 NONE
JH254_RS21035 NONE
JH254_RS00395 NONE
JH254_RS21030 NONE
JH254_RS00390 NONE
JH254_RS00385 NONE
JH254_RS00375 NONE
JH254_RS21025 NONE
JH254_RS21020 NONE
JH254_RS00370 NONE
JH254_RS21015 NONE
        artQ NONE
JH254_RS21010 NONE
        artM NONE
         mdh NONE
JH254_RS00350 NONE
JH254_RS00340 NONE
JH254_RS21005 NONE
JH254_RS21000 NONE
         ffh NONE
        rpsP NONE
JH254_RS20995 NONE
        rimM NONE
        trmD NONE
        rplS NONE
        rppH NONE
        ptsP NONE
         lgt NONE
        thyA NONE
JH254_RS20990 NONE
JH254_RS20985 NONE
JH254_RS20980 NONE
JH254_RS20975 NONE
        nhaA NONE
JH254_RS00265 NONE
JH254_RS20970 NONE
JH254_RS20965 NONE
        nhaR NONE
JH254_RS20960 NONE
JH254_RS00255 NONE
JH254_RS20955 NONE
JH254_RS20950 NONE
JH254_RS20945 NONE
        murJ NONE
        ribF NONE
JH254_RS20940 NONE
JH254_RS20935 NONE
JH254_RS20930 NONE
JH254_RS20925 NONE
        ileS NONE
        lspA NONE
JH254_RS20920 NONE
        fkpB NONE
JH254_RS20915 NONE
        ispH NONE
JH254_RS20910   47075 ..   47089 -  -2.8  -2.56914   GAGGCCATCAAGGGA               CTGC TGACTAT GCAG               CTAAAGCAGGAAGAA  40 11
JH254_RS20905 NONE
JH254_RS00210 NONE
JH254_RS20900 NONE
JH254_RS00205 NONE
JH254_RS00200 NONE
JH254_RS20895 NONE
JH254_RS20890 NONE
JH254_RS00195 NONE
JH254_RS20885 NONE
JH254_RS00190 NONE
        glnB NONE
JH254_RS00180 NONE
        luxS NONE
        dnaE NONE
JH254_RS20875   38043 ..   38057 -  -5.6  -3.59979   GCCGCCTATTTGAAA               CAGGCG GTC CCCCTG               ATGATCAAGTATCAA  57 80
JH254_RS20870 NONE
JH254_RS20865 NONE
         rnr NONE
JH254_RS20860 NONE
        rlmB NONE
JH254_RS20855 NONE
JH254_RS00155 NONE
JH254_RS20850 NONE
JH254_RS20845 NONE
JH254_RS00150 NONE
JH254_RS20840 NONE
JH254_RS00145 NONE
JH254_RS20835   32113 ..   32127 -  -7.1  -3.05384   CTGGCCTCCAGTGAA               GAGGG ATTTA CCCTC               ACCACCCGGGTCACT  54 41
JH254_RS20830   31751 ..   31767 -  -3.6   -3.6471   GGCGAAAGGAGACAA              GCGAGC TGGAC GCTCTC              GGGCAGCCGGATTTC  52 51
JH254_RS20825   31369 ..   31386 -  -4.1  -3.53012   GTCGTCTGTTGCAAA             CAGGG GGATCCGA CCCTG              CTGGTCACCGACCTC  51 53
JH254_RS20820   30770 ..   30801 -  -2.2  -2.71144   CAGCTCCGGCAACCA      GCAGGT-GGCCGA GCTGGAA TCGGCCTACCAGA      CCCTCACGCCCCTGC  39 44
JH254_RS20815 NONE
JH254_RS20810 NONE
JH254_RS20805 NONE
JH254_RS20800 NONE
        rpsF NONE
        rpsR NONE
        rplI NONE
JH254_RS20795 NONE
JH254_RS00115   27664 ..   27681 -  -6.9  -3.99374   GCCCAGGAACAAGAA             CGGCGGC AACG GCCACCA              AAAACACTGACCAGC  66 90
JH254_RS00100   25777 ..   25794 - -12.7  -5.06414   TGCCGGCAACAAAAA             GGCCACC CAGA GGTGGCC              TGAAGATCAATTCCC 100 32
JH254_RS00090 NONE
JH254_RS00085   24120 ..   24132 -  -3.3  -5.28176   GTGAGTGACAAAAAA                GGGCT AGA AGACC                TGACTGGCCAGCAGA  85 16
JH254_RS00080 NONE
       intI1 NONE
JH254_RS20750 NONE
JH254_RS21350 NONE
JH254_RS20745 NONE
JH254_RS00075 NONE
JH254_RS20740 NONE
JH254_RS20735 NONE
JH254_RS20730 NONE
JH254_RS20725 NONE
JH254_RS20720 NONE
JH254_RS00060 NONE
JH254_RS20715 NONE
JH254_RS20710 NONE
JH254_RS20705   14127 ..   14142 - -10.4  -3.14132   GTGTTGCTTGAGGAA              TGGCCG CAAT CGGCCA               AATTTGTCATGCCCC  68 16
JH254_RS20700 NONE
JH254_RS00050 NONE
        groL NONE
JH254_RS00040 NONE
JH254_RS20690 NONE
JH254_RS20685 NONE
JH254_RS00035 NONE
JH254_RS21405 NONE
JH254_RS20680 NONE
JH254_RS00030 NONE
JH254_RS21295 NONE
JH254_RS20675 NONE
JH254_RS21400 NONE
JH254_RS20670 NONE
JH254_RS20665    7553 ..    7589 -  -7.1  -3.01712   TGCTGGCCGCCAACA    CCGGCGAGCAGGGCCCC CTC GACGCCCTGCTGGTCAA    GACCCGCGAACTGCA  53 10
JH254_RS20660 NONE
JH254_RS20655 NONE
JH254_RS20650    5865 ..    5884 -  -6.4  -2.87132   TGGCCTGCTTATATA            TGTAGGTG TCCG CACCGACA             ATGGTGAGCCGGTTG  50 1
JH254_RS20645    5137 ..    5153 -  -6.7  -4.26589   ATCAGACATTGAAAA              TCAAAAA TTG TTTTTGA              TGCTCGATGCTGTGA  71 13
JH254_RS20640 NONE
JH254_RS20635 NONE
JH254_RS00015    3412 ..    3431 -  -6.4  -3.52539   GAAGTTGAATCAGAA            CCGATGCA TTTC TGCACCAG             GTCTTTGCTCTAACT  56 95
JH254_RS20630 NONE
JH254_RS00010    3096 ..    3124 - -14.1  -4.64676   CGAGGCCGAAGAAAA        CAGACATAAACAT GTG ATGCTTATGTCTG        CATTCTTGAGCTGCG 100 49
