locus-tag class description JN439_RS00005 PF11638 DnaA N-terminal domain JN439_RS00005 PF00308 Bacterial dnaA protein JN439_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix JN439_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JN439_RS00010 PF02767 DNA polymerase III beta subunit, central domain JN439_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JN439_RS00015 PF02463 RecF/RecN/SMC N terminal domain JN439_RS00020 PF18053 DNA gyrase B subunit insert domain JN439_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus JN439_RS00020 PF00204 DNA gyrase B JN439_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS00020 PF01751 Toprim domain JN439_RS00025 PF12833 Helix-turn-helix domain JN439_RS00025 PF02311 AraC-like ligand binding domain JN439_RS00030 PF12706 Beta-lactamase superfamily domain JN439_RS00035 PF00011 Hsp20/alpha crystallin family JN439_RS00040 PF00011 Hsp20/alpha crystallin family JN439_RS00045 PF00155 Aminotransferase class I and II JN439_RS00060 PF07690 Major Facilitator Superfamily JN439_RS00065 PF00072 Response regulator receiver domain JN439_RS00065 PF00486 Transcriptional regulatory protein, C terminal JN439_RS00070 PF02702 Osmosensitive K+ channel His kinase sensor domain JN439_RS00070 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS00070 PF13492 GAF domain JN439_RS00070 PF13493 Domain of unknown function (DUF4118) JN439_RS00075 PF02669 K+-transporting ATPase, c chain JN439_RS00085 PF03814 Potassium-transporting ATPase A subunit JN439_RS00090 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS00090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN439_RS00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS00095 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS00095 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS00100 PF00873 AcrB/AcrD/AcrF family JN439_RS00105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS00110 PF00440 Bacterial regulatory proteins, tetR family JN439_RS00145 PF12146 Serine aminopeptidase, S33 JN439_RS00150 PF12105 SpoU, rRNA methylase, C-terminal JN439_RS00150 PF00588 SpoU rRNA Methylase family JN439_RS00155 PF04607 Region found in RelA / SpoT proteins JN439_RS00155 PF13291 ACT domain JN439_RS00155 PF02824 TGS domain JN439_RS00160 PF01192 RNA polymerase Rpb6 JN439_RS00165 PF00625 Guanylate kinase JN439_RS00170 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JN439_RS00185 PF00892 EamA-like transporter family JN439_RS00205 PF03466 LysR substrate binding domain JN439_RS00205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS00210 PF00579 tRNA synthetases class I (W and Y) JN439_RS00220 PF00582 Universal stress protein family JN439_RS00225 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JN439_RS00225 PF07055 Enoyl reductase FAD binding domain JN439_RS00225 PF12241 Trans-2-enoyl-CoA reductase catalytic region JN439_RS00230 PF05230 MASE2 domain JN439_RS00230 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS00235 PF00210 Ferritin-like domain JN439_RS00245 PF07690 Major Facilitator Superfamily JN439_RS00250 PF01810 LysE type translocator JN439_RS00265 PF16967 E-set like domain JN439_RS00265 PF15976 CS1-pili formation C-terminal JN439_RS00270 PF18649 EcpB C-terminal domain JN439_RS00275 PF16449 Fimbrillin MatB JN439_RS00280 PF00196 Bacterial regulatory proteins, luxR family JN439_RS00280 PF00072 Response regulator receiver domain JN439_RS00285 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS00285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS00285 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS00285 PF00072 Response regulator receiver domain JN439_RS00285 PF00989 PAS fold JN439_RS00285 PF01627 Hpt domain JN439_RS00295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS00295 PF06580 Histidine kinase JN439_RS00295 PF07694 5TMR of 5TMR-LYT JN439_RS00300 PF00072 Response regulator receiver domain JN439_RS00300 PF04397 LytTr DNA-binding domain JN439_RS00305 PF07690 Major Facilitator Superfamily JN439_RS00310 PF01609 Transposase DDE domain JN439_RS00310 PF13006 Insertion element 4 transposase N-terminal JN439_RS00315 PF02222 ATP-grasp domain JN439_RS00315 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JN439_RS00320 PF00731 AIR carboxylase JN439_RS00325 PF07715 TonB-dependent Receptor Plug Domain JN439_RS00325 PF00593 TonB dependent receptor JN439_RS00330 PF01177 Asp/Glu/Hydantoin racemase JN439_RS00370 PF00899 ThiF family JN439_RS00375 PF02657 Fe-S metabolism associated domain JN439_RS00380 PF00266 Aminotransferase class-V JN439_RS00385 PF13361 UvrD-like helicase C-terminal domain JN439_RS00385 PF00580 UvrD/REP helicase N-terminal domain JN439_RS00390 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS00390 PF03707 Bacterial signalling protein N terminal repeat JN439_RS00390 PF00563 EAL domain JN439_RS00395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JN439_RS00400 PF00107 Zinc-binding dehydrogenase JN439_RS00400 PF08240 Alcohol dehydrogenase GroES-like domain JN439_RS00405 PF00155 Aminotransferase class I and II JN439_RS00410 PF08360 QacR-like protein, C-terminal region JN439_RS00410 PF00440 Bacterial regulatory proteins, tetR family JN439_RS00415 PF01370 NAD dependent epimerase/dehydratase family JN439_RS00430 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) JN439_RS00445 PF03611 PTS system sugar-specific permease component JN439_RS00455 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JN439_RS00460 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JN439_RS00460 PF00356 Bacterial regulatory proteins, lacI family JN439_RS00475 PF03748 Flagellar basal body-associated protein FliL JN439_RS00480 PF04345 Chorismate lyase JN439_RS00485 PF01040 UbiA prenyltransferase family JN439_RS00490 PF01553 Acyltransferase JN439_RS00495 PF00717 Peptidase S24-like JN439_RS00495 PF01726 LexA DNA binding domain JN439_RS00505 PF02630 SCO1/SenC JN439_RS00510 PF01554 MatE JN439_RS00515 PF00588 SpoU rRNA Methylase family JN439_RS00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS00520 PF00672 HAMP domain JN439_RS00520 PF16527 Two-component sensor protein CpxA, periplasmic domain JN439_RS00520 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS00525 PF00072 Response regulator receiver domain JN439_RS00525 PF00486 Transcriptional regulatory protein, C terminal JN439_RS00530 PF01545 Cation efflux family JN439_RS00530 PF16916 Dimerisation domain of Zinc Transporter JN439_RS00535 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS00535 PF06426 Serine acetyltransferase, N-terminal JN439_RS00545 PF06005 Cell division protein ZapB JN439_RS00555 PF00476 DNA polymerase family A JN439_RS00555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JN439_RS00555 PF01367 5'-3' exonuclease, C-terminal SAM fold JN439_RS00555 PF01612 3'-5' exonuclease JN439_RS00560 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS00595 PF00356 Bacterial regulatory proteins, lacI family JN439_RS00600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JN439_RS00600 PF02837 Glycosyl hydrolases family 2, sugar binding domain JN439_RS00600 PF00703 Glycosyl hydrolases family 2 JN439_RS00600 PF16353 Domain of unknown function(DUF4981) JN439_RS00600 PF02929 Beta galactosidase small chain JN439_RS00605 PF04074 YhcH/YjgK/YiaL JN439_RS00610 PF13520 Amino acid permease JN439_RS00615 PF01588 Putative tRNA binding domain JN439_RS00620 PF13520 Amino acid permease JN439_RS00625 PF13593 SBF-like CPA transporter family (DUF4137) JN439_RS00630 PF12867 DinB superfamily JN439_RS00630 PF03781 Sulfatase-modifying factor enzyme 1 JN439_RS00645 PF00756 Putative esterase JN439_RS00650 PF00107 Zinc-binding dehydrogenase JN439_RS00650 PF08240 Alcohol dehydrogenase GroES-like domain JN439_RS00655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS00655 PF03466 LysR substrate binding domain JN439_RS00660 PF02653 Branched-chain amino acid transport system / permease component JN439_RS00665 PF02653 Branched-chain amino acid transport system / permease component JN439_RS00670 PF00005 ABC transporter JN439_RS00675 PF02608 ABC transporter substrate-binding protein PnrA-like JN439_RS00690 PF13361 UvrD-like helicase C-terminal domain JN439_RS00690 PF00580 UvrD/REP helicase N-terminal domain JN439_RS00710 PF03466 LysR substrate binding domain JN439_RS00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS00725 PF14001 YdfZ protein JN439_RS00750 PF06206 CpeT/CpcT family (DUF1001) JN439_RS00755 PF01810 LysE type translocator JN439_RS00760 PF12833 Helix-turn-helix domain JN439_RS00765 PF00892 EamA-like transporter family JN439_RS00775 PF00171 Aldehyde dehydrogenase family JN439_RS00780 PF01381 Helix-turn-helix JN439_RS00780 PF07883 Cupin domain JN439_RS00785 PF00202 Aminotransferase class-III JN439_RS00790 PF00171 Aldehyde dehydrogenase family JN439_RS00795 PF02540 NAD synthase JN439_RS00795 PF00958 GMP synthase C terminal domain JN439_RS00795 PF00117 Glutamine amidotransferase class-I JN439_RS00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS00800 PF03466 LysR substrate binding domain JN439_RS00805 PF00294 pfkB family carbohydrate kinase JN439_RS00810 PF02082 Transcriptional regulator JN439_RS00825 PF02646 RmuC family JN439_RS00830 PF02386 Cation transport protein JN439_RS00835 PF02254 TrkA-N domain JN439_RS00835 PF02080 TrkA-C domain JN439_RS00840 PF01189 16S rRNA methyltransferase RsmB/F JN439_RS00840 PF01029 NusB family JN439_RS00845 PF00551 Formyl transferase JN439_RS00845 PF02911 Formyl transferase, C-terminal domain JN439_RS00850 PF01327 Polypeptide deformylase JN439_RS00860 PF02481 DNA recombination-mediator protein A JN439_RS00860 PF17782 DprA winged helix domain JN439_RS00865 PF04361 Protein of unknown function (DUF494) JN439_RS00870 PF01396 Topoisomerase DNA binding C4 zinc finger JN439_RS00875 PF01300 Telomere recombination JN439_RS00880 PF01218 Coproporphyrinogen III oxidase JN439_RS00885 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JN439_RS00885 PF01488 Shikimate / quinate 5-dehydrogenase JN439_RS00885 PF08501 Shikimate dehydrogenase substrate binding domain JN439_RS00890 PF01926 50S ribosome-binding GTPase JN439_RS00895 PF00034 Cytochrome c JN439_RS00905 PF04220 Der GTPase activator (YihI) JN439_RS00910 PF10675 Protein of unknown function (DUF2489) JN439_RS00915 PF06969 HemN C-terminal domain JN439_RS00915 PF04055 Radical SAM superfamily JN439_RS00920 PF01610 Transposase JN439_RS00920 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS00920 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS00925 PF00962 Adenosine/AMP deaminase JN439_RS00930 PF00072 Response regulator receiver domain JN439_RS00930 PF02954 Bacterial regulatory protein, Fis family JN439_RS00930 PF00158 Sigma-54 interaction domain JN439_RS00935 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS00935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS00935 PF00989 PAS fold JN439_RS00945 PF03951 Glutamine synthetase, beta-Grasp domain JN439_RS00945 PF00120 Glutamine synthetase, catalytic domain JN439_RS00950 PF00679 Elongation factor G C-terminus JN439_RS00950 PF00009 Elongation factor Tu GTP binding domain JN439_RS00950 PF03144 Elongation factor Tu domain 2 JN439_RS00955 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS00955 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS00955 PF01610 Transposase JN439_RS00960 PF03631 Virulence factor BrkB JN439_RS00965 PF02580 D-Tyr-tRNA(Tyr) deacylase JN439_RS00975 PF09500 Putative thioesterase (yiiD_Cterm) JN439_RS00975 PF00583 Acetyltransferase (GNAT) family JN439_RS00985 PF00270 DEAD/DEAH box helicase JN439_RS00985 PF00271 Helicase conserved C-terminal domain JN439_RS00985 PF17191 RecG wedge domain JN439_RS00990 PF13091 PLD-like domain JN439_RS00995 PF02447 GntP family permease JN439_RS01000 PF01202 Shikimate kinase JN439_RS01005 PF00920 Dehydratase family JN439_RS01010 PF01081 KDPG and KHG aldolase JN439_RS01025 PF00356 Bacterial regulatory proteins, lacI family JN439_RS01025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JN439_RS01035 PF01551 Peptidase family M23 JN439_RS01040 PF01676 Metalloenzyme superfamily JN439_RS01040 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JN439_RS01045 PF00581 Rhodanese-like domain JN439_RS01050 PF02556 Preprotein translocase subunit SecB JN439_RS01055 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JN439_RS01055 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JN439_RS01060 PF01521 Iron-sulphur cluster biosynthesis JN439_RS01060 PF01106 NifU-like domain JN439_RS01065 PF00156 Phosphoribosyl transferase domain JN439_RS01070 PF00561 alpha/beta hydrolase fold JN439_RS01085 PF17674 HHH domain JN439_RS01085 PF00575 S1 RNA binding domain JN439_RS01085 PF09371 Tex-like protein N-terminal domain JN439_RS01085 PF16921 Tex protein YqgF-like domain JN439_RS01090 PF03449 Transcription elongation factor, N-terminal JN439_RS01090 PF01272 Transcription elongation factor, GreA/GreB, C-term JN439_RS01095 PF00486 Transcriptional regulatory protein, C terminal JN439_RS01095 PF00072 Response regulator receiver domain JN439_RS01100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS01100 PF00672 HAMP domain JN439_RS01100 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS01110 PF00338 Ribosomal protein S10p/S20e JN439_RS01115 PF00297 Ribosomal protein L3 JN439_RS01120 PF00573 Ribosomal protein L4/L1 family JN439_RS01125 PF00276 Ribosomal protein L23 JN439_RS01130 PF03947 Ribosomal Proteins L2, C-terminal domain JN439_RS01130 PF00181 Ribosomal Proteins L2, RNA binding domain JN439_RS01135 PF00203 Ribosomal protein S19 JN439_RS01140 PF00237 Ribosomal protein L22p/L17e JN439_RS01145 PF00189 Ribosomal protein S3, C-terminal domain JN439_RS01145 PF07650 KH domain JN439_RS01150 PF00252 Ribosomal protein L16p/L10e JN439_RS01155 PF00831 Ribosomal L29 protein JN439_RS01160 PF00366 Ribosomal protein S17 JN439_RS01165 PF00238 Ribosomal protein L14p/L23e JN439_RS01170 PF00467 KOW motif JN439_RS01170 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JN439_RS01175 PF00281 Ribosomal protein L5 JN439_RS01175 PF00673 ribosomal L5P family C-terminus JN439_RS01180 PF00253 Ribosomal protein S14p/S29e JN439_RS01185 PF00410 Ribosomal protein S8 JN439_RS01190 PF00347 Ribosomal protein L6 JN439_RS01195 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JN439_RS01200 PF00333 Ribosomal protein S5, N-terminal domain JN439_RS01200 PF03719 Ribosomal protein S5, C-terminal domain JN439_RS01205 PF00327 Ribosomal protein L30p/L7e JN439_RS01210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JN439_RS01215 PF00344 SecY translocase JN439_RS01220 PF00444 Ribosomal protein L36 JN439_RS01225 PF00416 Ribosomal protein S13/S18 JN439_RS01230 PF00411 Ribosomal protein S11 JN439_RS01235 PF00163 Ribosomal protein S4/S9 N-terminal domain JN439_RS01235 PF01479 S4 domain JN439_RS01240 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JN439_RS01240 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JN439_RS01240 PF01000 RNA polymerase Rpb3/RpoA insert domain JN439_RS01245 PF01196 Ribosomal protein L17 JN439_RS01295 PF01695 IstB-like ATP binding protein JN439_RS01300 PF00665 Integrase core domain JN439_RS01310 PF00665 Integrase core domain JN439_RS01330 PF00999 Sodium/hydrogen exchanger family JN439_RS01330 PF02254 TrkA-N domain JN439_RS01335 PF02525 Flavodoxin-like fold JN439_RS01340 PF03466 LysR substrate binding domain JN439_RS01340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS01350 PF12323 Helix-turn-helix domain JN439_RS01350 PF07282 Putative transposase DNA-binding domain JN439_RS01350 PF01385 Probable transposase JN439_RS01355 PF00106 short chain dehydrogenase JN439_RS01370 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JN439_RS01370 PF00326 Prolyl oligopeptidase family JN439_RS01375 PF16868 NMT1-like family JN439_RS01390 PF07947 YhhN family JN439_RS01395 PF07690 Major Facilitator Superfamily JN439_RS01400 PF13533 Biotin-lipoyl like JN439_RS01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS01405 PF03466 LysR substrate binding domain JN439_RS01420 PF00375 Sodium:dicarboxylate symporter family JN439_RS01425 PF10678 Protein of unknown function (DUF2492) JN439_RS01430 PF01914 MarC family integral membrane protein JN439_RS01435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS01435 PF03466 LysR substrate binding domain JN439_RS01440 PF02416 mttA/Hcf106 family JN439_RS01450 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS01450 PF01464 Transglycosylase SLT domain JN439_RS01460 PF13091 PLD-like domain JN439_RS01465 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS01465 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS01465 PF01610 Transposase JN439_RS01475 PF00440 Bacterial regulatory proteins, tetR family JN439_RS01480 PF07226 Protein of unknown function (DUF1422) JN439_RS01495 PF00448 SRP54-type protein, GTPase domain JN439_RS01495 PF02881 SRP54-type protein, helical bundle domain JN439_RS01500 PF00005 ABC transporter JN439_RS01505 PF18075 FtsX extracellular domain JN439_RS01510 PF00140 Sigma-70 factor, region 1.2 JN439_RS01510 PF04542 Sigma-70 region 2 JN439_RS01510 PF04545 Sigma-70, region 4 JN439_RS01515 PF00484 Carbonic anhydrase JN439_RS01520 PF07702 UTRA domain JN439_RS01520 PF00392 Bacterial regulatory proteins, gntR family JN439_RS01525 PF01979 Amidohydrolase family JN439_RS01530 PF00491 Arginase family JN439_RS01535 PF01175 Urocanase Rossmann-like domain JN439_RS01535 PF17391 Urocanase N-terminal domain JN439_RS01535 PF17392 Urocanase C-terminal domain JN439_RS01540 PF00221 Aromatic amino acid lyase JN439_RS01545 PF01699 Sodium/calcium exchanger protein JN439_RS01550 PF12792 CSS motif domain associated with EAL JN439_RS01550 PF00563 EAL domain JN439_RS01585 PF00263 Bacterial type II and III secretion system protein JN439_RS01585 PF03958 Bacterial type II/III secretion system short domain JN439_RS01605 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JN439_RS01605 PF00437 Type II/IV secretion system protein JN439_RS01610 PF00482 Type II secretion system (T2SS), protein F JN439_RS01625 PF07963 Prokaryotic N-terminal methylation motif JN439_RS01630 PF00114 Pilin (bacterial filament) JN439_RS01630 PF07963 Prokaryotic N-terminal methylation motif JN439_RS01660 PF04085 rod shape-determining protein MreC JN439_RS01665 PF04093 rod shape-determining protein MreD JN439_RS01670 PF02545 Maf-like protein JN439_RS01675 PF10150 Ribonuclease E/G family JN439_RS01675 PF00575 S1 RNA binding domain JN439_RS01680 PF13116 Protein of unknown function JN439_RS01680 PF13502 AsmA-like C-terminal region JN439_RS01685 PF00795 Carbon-nitrogen hydrolase JN439_RS01690 PF01523 Putative modulator of DNA gyrase JN439_RS01700 PF01914 MarC family integral membrane protein JN439_RS01705 PF07690 Major Facilitator Superfamily JN439_RS01715 PF04228 Putative neutral zinc metallopeptidase JN439_RS01725 PF07282 Putative transposase DNA-binding domain JN439_RS01725 PF01385 Probable transposase JN439_RS01725 PF12323 Helix-turn-helix domain JN439_RS01745 PF00999 Sodium/hydrogen exchanger family JN439_RS01750 PF00809 Pterin binding enzyme JN439_RS01750 PF02310 B12 binding domain JN439_RS01750 PF02607 B12 binding domain JN439_RS01750 PF02965 Vitamin B12 dependent methionine synthase, activation domain JN439_RS01750 PF02574 Homocysteine S-methyltransferase JN439_RS01760 PF08443 RimK-like ATP-grasp domain JN439_RS01760 PF18030 RimK PreATP-grasp domain JN439_RS01765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS01770 PF00486 Transcriptional regulatory protein, C terminal JN439_RS01770 PF00072 Response regulator receiver domain JN439_RS01785 PF01964 Radical SAM ThiC family JN439_RS01785 PF13667 ThiC-associated domain JN439_RS01790 PF02581 Thiamine monophosphate synthase JN439_RS01795 PF00899 ThiF family JN439_RS01805 PF05690 Thiazole biosynthesis protein ThiG JN439_RS01810 PF04055 Radical SAM superfamily JN439_RS01810 PF06968 Biotin and Thiamin Synthesis associated domain JN439_RS01815 PF13036 Peptidoglycan-synthase activator LpoB JN439_RS01820 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS01825 PF06055 Exopolysaccharide synthesis, ExoD JN439_RS01835 PF08803 Putative mono-oxygenase ydhR JN439_RS01840 PF01638 HxlR-like helix-turn-helix JN439_RS01845 PF13508 Acetyltransferase (GNAT) domain JN439_RS01845 PF00583 Acetyltransferase (GNAT) family JN439_RS01860 PF07715 TonB-dependent Receptor Plug Domain JN439_RS01860 PF00593 TonB dependent receptor JN439_RS01870 PF01610 Transposase JN439_RS01870 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS01870 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS01875 PF08241 Methyltransferase domain JN439_RS01885 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JN439_RS01890 PF03692 Putative zinc- or iron-chelating domain JN439_RS01895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JN439_RS01900 PF01722 BolA-like protein JN439_RS01910 PF05494 MlaC protein JN439_RS01915 PF02470 MlaD protein JN439_RS01920 PF02405 Permease MlaE JN439_RS01925 PF00005 ABC transporter JN439_RS01930 PF00571 CBS domain JN439_RS01930 PF01380 SIS domain JN439_RS01945 PF03968 OstA-like protein JN439_RS01950 PF12399 Branched-chain amino acid ATP-binding cassette transporter JN439_RS01950 PF00005 ABC transporter JN439_RS01955 PF04552 Sigma-54, DNA binding domain JN439_RS01955 PF00309 Sigma-54 factor, Activator interacting domain (AID) JN439_RS01955 PF04963 Sigma-54 factor, core binding domain JN439_RS01960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JN439_RS01965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JN439_RS01970 PF03668 P-loop ATPase protein family JN439_RS01975 PF00381 PTS HPr component phosphorylation site JN439_RS01980 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JN439_RS01980 PF02378 Phosphotransferase system, EIIC JN439_RS01980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JN439_RS01985 PF07071 KDGP aldolase JN439_RS01990 PF03841 L-seryl-tRNA selenium transferase JN439_RS01995 PF01979 Amidohydrolase family JN439_RS02025 PF13180 PDZ domain JN439_RS02030 PF00595 PDZ domain JN439_RS02030 PF13180 PDZ domain JN439_RS02040 PF03969 AFG1-like ATPase JN439_RS02045 PF00572 Ribosomal protein L13 JN439_RS02050 PF00380 Ribosomal protein S9/S16 JN439_RS02055 PF00355 Rieske [2Fe-2S] domain JN439_RS02055 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JN439_RS02060 PF00032 Cytochrome b(C-terminal)/b6/petD JN439_RS02060 PF00033 Cytochrome b/b6/petB JN439_RS02065 PF02167 Cytochrome C1 family JN439_RS02070 PF00043 Glutathione S-transferase, C-terminal domain JN439_RS02070 PF02798 Glutathione S-transferase, N-terminal domain JN439_RS02075 PF04386 Stringent starvation protein B JN439_RS02080 PF01610 Transposase JN439_RS02080 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS02080 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS02085 PF04972 BON domain JN439_RS02090 PF13580 SIS domain JN439_RS02095 PF02021 Uncharacterised protein family UPF0102 JN439_RS02100 PF04348 LppC putative lipoprotein JN439_RS02105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JN439_RS02115 PF02381 MraZ protein, putative antitoxin-like JN439_RS02120 PF01795 MraW methylase family JN439_RS02125 PF04999 Cell division protein FtsL JN439_RS02130 PF00905 Penicillin binding protein transpeptidase domain JN439_RS02130 PF03717 Penicillin-binding Protein dimerisation domain JN439_RS02135 PF01225 Mur ligase family, catalytic domain JN439_RS02135 PF02875 Mur ligase family, glutamate ligase domain JN439_RS02135 PF08245 Mur ligase middle domain JN439_RS02140 PF02875 Mur ligase family, glutamate ligase domain JN439_RS02140 PF01225 Mur ligase family, catalytic domain JN439_RS02140 PF08245 Mur ligase middle domain JN439_RS02145 PF00953 Glycosyl transferase family 4 JN439_RS02145 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JN439_RS02150 PF08245 Mur ligase middle domain JN439_RS02150 PF02875 Mur ligase family, glutamate ligase domain JN439_RS02155 PF01098 Cell cycle protein JN439_RS02160 PF04101 Glycosyltransferase family 28 C-terminal domain JN439_RS02160 PF03033 Glycosyltransferase family 28 N-terminal domain JN439_RS02165 PF01225 Mur ligase family, catalytic domain JN439_RS02165 PF08245 Mur ligase middle domain JN439_RS02165 PF02875 Mur ligase family, glutamate ligase domain JN439_RS02170 PF08478 POTRA domain, FtsQ-type JN439_RS02170 PF03799 Cell division protein FtsQ JN439_RS02175 PF02491 SHS2 domain inserted in FTSA JN439_RS02180 PF00091 Tubulin/FtsZ family, GTPase domain JN439_RS02180 PF12327 FtsZ family, C-terminal domain JN439_RS02185 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JN439_RS02195 PF07517 SecA DEAD-like domain JN439_RS02195 PF01043 SecA preprotein cross-linking domain JN439_RS02195 PF02810 SEC-C motif JN439_RS02195 PF07516 SecA Wing and Scaffold domain JN439_RS02205 PF00293 NUDIX domain JN439_RS02210 PF03884 DNA gyrase inhibitor YacG JN439_RS02215 PF07072 Cell division protein JN439_RS02220 PF01121 Dephospho-CoA kinase JN439_RS02225 PF01478 Type IV leader peptidase family JN439_RS02225 PF06750 Bacterial Peptidase A24 N-terminal domain JN439_RS02230 PF00482 Type II secretion system (T2SS), protein F JN439_RS02235 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JN439_RS02235 PF00437 Type II/IV secretion system protein JN439_RS02240 PF07963 Prokaryotic N-terminal methylation motif JN439_RS02250 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JN439_RS02250 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JN439_RS02260 PF01510 N-acetylmuramoyl-L-alanine amidase JN439_RS02265 PF00392 Bacterial regulatory proteins, gntR family JN439_RS02265 PF07729 FCD domain JN439_RS02270 PF17831 Pyruvate dehydrogenase E1 component middle domain JN439_RS02270 PF00456 Transketolase, thiamine diphosphate binding domain JN439_RS02275 PF02817 e3 binding domain JN439_RS02275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JN439_RS02275 PF00364 Biotin-requiring enzyme JN439_RS02280 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS02280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN439_RS02290 PF00672 HAMP domain JN439_RS02290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS02290 PF12729 Four helix bundle sensory module for signal transduction JN439_RS02295 PF01734 Patatin-like phospholipase JN439_RS02300 PF06434 Aconitate hydratase 2 N-terminus JN439_RS02300 PF00330 Aconitase family (aconitate hydratase) JN439_RS02300 PF11791 Aconitate B N-terminal domain JN439_RS02320 PF01810 LysE type translocator JN439_RS02325 PF01565 FAD binding domain JN439_RS02325 PF04030 D-arabinono-1,4-lactone oxidase JN439_RS02330 PF07683 Cobalamin synthesis protein cobW C-terminal domain JN439_RS02330 PF02492 CobW/HypB/UreG, nucleotide-binding domain JN439_RS02350 PF07690 Major Facilitator Superfamily JN439_RS02360 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JN439_RS02365 PF02152 Dihydroneopterin aldolase JN439_RS02370 PF02660 Glycerol-3-phosphate acyltransferase JN439_RS02415 PF02028 BCCT, betaine/carnitine/choline family transporter JN439_RS02420 PF01624 MutS domain I JN439_RS02420 PF00488 MutS domain V JN439_RS02420 PF05192 MutS domain III JN439_RS02420 PF05188 MutS domain II JN439_RS02420 PF05190 MutS family domain IV JN439_RS02430 PF02464 Competence-damaged protein JN439_RS02435 PF00154 recA bacterial DNA recombination protein JN439_RS02440 PF02631 RecX family JN439_RS02445 PF02272 DHHA1 domain JN439_RS02445 PF01411 tRNA synthetases class II (A) JN439_RS02445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JN439_RS02450 PF13840 ACT domain JN439_RS02450 PF01842 ACT domain JN439_RS02450 PF00696 Amino acid kinase family JN439_RS02455 PF02599 Global regulator protein family JN439_RS02490 PF00768 D-alanyl-D-alanine carboxypeptidase JN439_RS02495 PF09335 SNARE associated Golgi protein JN439_RS02500 PF00571 CBS domain JN439_RS02500 PF03471 Transporter associated domain JN439_RS02500 PF01595 Cyclin M transmembrane N-terminal domain JN439_RS02505 PF00133 tRNA synthetases class I (I, L, M and V) JN439_RS02505 PF08264 Anticodon-binding domain of tRNA JN439_RS02505 PF10458 Valyl tRNA synthetase tRNA binding arm JN439_RS02515 PF00883 Cytosol aminopeptidase family, catalytic domain JN439_RS02515 PF02789 Cytosol aminopeptidase family, N-terminal domain JN439_RS02520 PF03739 Lipopolysaccharide export system permease LptF/LptG JN439_RS02525 PF03739 Lipopolysaccharide export system permease LptF/LptG JN439_RS02540 PF00589 Phage integrase family JN439_RS02540 PF13356 Arm DNA-binding domain JN439_RS02590 PF04851 Type III restriction enzyme, res subunit JN439_RS02590 PF08463 EcoEI R protein C-terminal JN439_RS02590 PF00271 Helicase conserved C-terminal domain JN439_RS02590 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JN439_RS02595 PF02384 N-6 DNA Methylase JN439_RS02595 PF12161 HsdM N-terminal domain JN439_RS02600 PF01420 Type I restriction modification DNA specificity domain JN439_RS02605 PF02463 RecF/RecN/SMC N terminal domain JN439_RS02655 PF00909 Ammonium Transporter Family JN439_RS02660 PF01938 TRAM domain JN439_RS02660 PF05958 tRNA (Uracil-5-)-methyltransferase JN439_RS02675 PF07963 Prokaryotic N-terminal methylation motif JN439_RS02680 PF01026 TatD related DNase JN439_RS02685 PF01773 Na+ dependent nucleoside transporter N-terminus JN439_RS02685 PF07662 Na+ dependent nucleoside transporter C-terminus JN439_RS02685 PF07670 Nucleoside recognition JN439_RS02695 PF01791 DeoC/LacD family aldolase JN439_RS02700 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JN439_RS02700 PF00591 Glycosyl transferase family, a/b domain JN439_RS02700 PF02885 Glycosyl transferase family, helical bundle domain JN439_RS02705 PF01676 Metalloenzyme superfamily JN439_RS02710 PF01048 Phosphorylase superfamily JN439_RS02715 PF08448 PAS fold JN439_RS02715 PF08447 PAS fold JN439_RS02715 PF00563 EAL domain JN439_RS02715 PF05231 MASE1 JN439_RS02715 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS02715 PF13426 PAS domain JN439_RS02725 PF18429 Domain of unknown function (DUF5609) JN439_RS02735 PF13006 Insertion element 4 transposase N-terminal JN439_RS02735 PF01609 Transposase DDE domain JN439_RS02745 PF18073 Rubredoxin metal binding domain JN439_RS02750 PF07238 PilZ domain JN439_RS02755 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JN439_RS02760 PF00216 Bacterial DNA-binding protein JN439_RS02775 PF01207 Dihydrouridine synthase (Dus) JN439_RS02780 PF01475 Ferric uptake regulator family JN439_RS02795 PF05525 Branched-chain amino acid transport protein JN439_RS02800 PF05175 Methyltransferase small domain JN439_RS02805 PF00270 DEAD/DEAH box helicase JN439_RS02805 PF00271 Helicase conserved C-terminal domain JN439_RS02810 PF03883 Peroxide stress protein YaaA JN439_RS02815 PF00437 Type II/IV secretion system protein JN439_RS02820 PF00437 Type II/IV secretion system protein JN439_RS02825 PF01168 Alanine racemase, N-terminal domain JN439_RS02830 PF03807 NADP oxidoreductase coenzyme F420-dependent JN439_RS02830 PF14748 Pyrroline-5-carboxylate reductase dimerisation JN439_RS02835 PF02325 YGGT family JN439_RS02840 PF02594 Uncharacterised ACR, YggU family COG1872 JN439_RS02860 PF06062 Uncharacterised protein family (UPF0231) JN439_RS02865 PF13556 PucR C-terminal helix-turn-helix domain JN439_RS02865 PF05651 Putative sugar diacid recognition JN439_RS02865 PF17853 GGDEF-like domain JN439_RS02870 PF02447 GntP family permease JN439_RS02875 PF02595 Glycerate kinase family JN439_RS02885 PF00255 Glutathione peroxidase JN439_RS02890 PF03466 LysR substrate binding domain JN439_RS02890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS02895 PF01773 Na+ dependent nucleoside transporter N-terminus JN439_RS02895 PF07670 Nucleoside recognition JN439_RS02895 PF07662 Na+ dependent nucleoside transporter C-terminus JN439_RS02900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JN439_RS02900 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JN439_RS02905 PF00472 RF-1 domain JN439_RS02910 PF00543 Nitrogen regulatory protein P-II JN439_RS02925 PF00005 ABC transporter JN439_RS02925 PF08402 TOBE domain JN439_RS02930 PF04261 Dyp-type peroxidase family JN439_RS02935 PF01316 Arginine repressor, DNA binding domain JN439_RS02935 PF02863 Arginine repressor, C-terminal domain JN439_RS02940 PF00005 ABC transporter JN439_RS02945 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS02950 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS02955 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS02960 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JN439_RS02960 PF00056 lactate/malate dehydrogenase, NAD binding domain JN439_RS02965 PF08238 Sel1 repeat JN439_RS02970 PF00175 Oxidoreductase NAD-binding domain JN439_RS02970 PF00042 Globin JN439_RS02970 PF00970 Oxidoreductase FAD-binding domain JN439_RS02975 PF02082 Transcriptional regulator JN439_RS02980 PF00571 CBS domain JN439_RS02980 PF03471 Transporter associated domain JN439_RS02980 PF01595 Cyclin M transmembrane N-terminal domain JN439_RS02985 PF01578 Cytochrome C assembly protein JN439_RS02990 PF02978 Signal peptide binding domain JN439_RS02990 PF00448 SRP54-type protein, GTPase domain JN439_RS02990 PF02881 SRP54-type protein, helical bundle domain JN439_RS02995 PF00886 Ribosomal protein S16 JN439_RS03000 PF01782 RimM N-terminal domain JN439_RS03000 PF05239 PRC-barrel domain JN439_RS03005 PF01746 tRNA (Guanine-1)-methyltransferase JN439_RS03010 PF01245 Ribosomal protein L19 JN439_RS03020 PF02976 DNA mismatch repair enzyme MutH JN439_RS03030 PF00293 NUDIX domain JN439_RS03035 PF01590 GAF domain JN439_RS03035 PF05524 PEP-utilising enzyme, N-terminal JN439_RS03035 PF02896 PEP-utilising enzyme, TIM barrel domain JN439_RS03035 PF00391 PEP-utilising enzyme, mobile domain JN439_RS03040 PF01790 Prolipoprotein diacylglyceryl transferase JN439_RS03045 PF00303 Thymidylate synthase JN439_RS03050 PF06965 Na+/H+ antiporter 1 JN439_RS03060 PF03466 LysR substrate binding domain JN439_RS03060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS03065 PF01022 Bacterial regulatory protein, arsR family JN439_RS03070 PF01649 Ribosomal protein S20 JN439_RS03075 PF03023 Lipid II flippase MurJ JN439_RS03080 PF06574 FAD synthetase JN439_RS03080 PF01687 Riboflavin kinase JN439_RS03085 PF06827 Zinc finger found in FPG and IleRS JN439_RS03085 PF00133 tRNA synthetases class I (I, L, M and V) JN439_RS03085 PF08264 Anticodon-binding domain of tRNA JN439_RS03090 PF01252 Signal peptidase (SPase) II JN439_RS03095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN439_RS03100 PF02401 LytB protein JN439_RS03130 PF00795 Carbon-nitrogen hydrolase JN439_RS03130 PF02540 NAD synthase JN439_RS03135 PF00543 Nitrogen regulatory protein P-II JN439_RS03145 PF02664 S-Ribosylhomocysteinase (LuxS) JN439_RS03150 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS03155 PF17876 Cold shock domain JN439_RS03155 PF08461 Ribonuclease R winged-helix domain JN439_RS03155 PF08206 Ribonuclease B OB domain JN439_RS03155 PF00773 RNB domain JN439_RS03155 PF00575 S1 RNA binding domain JN439_RS03160 PF08032 RNA 2'-O ribose methyltransferase substrate binding JN439_RS03160 PF00588 SpoU rRNA Methylase family JN439_RS03170 PF13673 Acetyltransferase (GNAT) domain JN439_RS03175 PF02272 DHHA1 domain JN439_RS03175 PF01411 tRNA synthetases class II (A) JN439_RS03175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JN439_RS03180 PF01566 Natural resistance-associated macrophage protein JN439_RS03185 PF01250 Ribosomal protein S6 JN439_RS03190 PF01084 Ribosomal protein S18 JN439_RS03195 PF01281 Ribosomal protein L9, N-terminal domain JN439_RS03195 PF03948 Ribosomal protein L9, C-terminal domain JN439_RS03200 PF00175 Oxidoreductase NAD-binding domain JN439_RS03200 PF00970 Oxidoreductase FAD-binding domain JN439_RS03220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN439_RS03230 PF14765 Polyketide synthase dehydratase JN439_RS03230 PF00550 Phosphopantetheine attachment site JN439_RS03230 PF08659 KR domain JN439_RS03230 PF00109 Beta-ketoacyl synthase, N-terminal domain JN439_RS03230 PF08240 Alcohol dehydrogenase GroES-like domain JN439_RS03230 PF08990 Erythronolide synthase docking JN439_RS03230 PF00698 Acyl transferase domain JN439_RS03230 PF16197 Ketoacyl-synthetase C-terminal extension JN439_RS03230 PF02801 Beta-ketoacyl synthase, C-terminal domain JN439_RS03235 PF09335 SNARE associated Golgi protein JN439_RS03240 PF05193 Peptidase M16 inactive domain JN439_RS03240 PF00675 Insulinase (Peptidase family M16) JN439_RS03245 PF04262 Glutamate-cysteine ligase JN439_RS03250 PF03605 Anaerobic c4-dicarboxylate membrane transporter JN439_RS03255 PF10415 Fumarase C C-terminus JN439_RS03255 PF00206 Lyase JN439_RS03260 PF04186 FxsA cytoplasmic membrane protein JN439_RS03265 PF01554 MatE JN439_RS03270 PF00166 Chaperonin 10 Kd subunit JN439_RS03275 PF00118 TCP-1/cpn60 chaperonin family JN439_RS03285 PF03707 Bacterial signalling protein N terminal repeat JN439_RS03285 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS03285 PF00563 EAL domain JN439_RS03295 PF00849 RNA pseudouridylate synthase JN439_RS03300 PF18337 RapA N-terminal Tudor like domain JN439_RS03300 PF12137 RNA polymerase recycling family C-terminal JN439_RS03300 PF18339 RapA N-terminal Tudor like domain 1 JN439_RS03300 PF00271 Helicase conserved C-terminal domain JN439_RS03300 PF00176 SNF2 family N-terminal domain JN439_RS03345 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS03350 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS03355 PF00005 ABC transporter JN439_RS03355 PF12857 TOBE-like domain JN439_RS03360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS03360 PF03466 LysR substrate binding domain JN439_RS03365 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JN439_RS03365 PF18416 N-acetylglucosamine binding protein domain 2 JN439_RS03395 PF11230 Protein of unknown function (DUF3029) JN439_RS03400 PF04055 Radical SAM superfamily JN439_RS03410 PF03466 LysR substrate binding domain JN439_RS03410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS03415 PF00155 Aminotransferase class I and II JN439_RS03420 PF11658 Cellulose biosynthesis protein BcsG JN439_RS03430 PF06564 Cellulose biosynthesis protein BcsQ JN439_RS03435 PF07238 PilZ domain JN439_RS03435 PF00535 Glycosyl transferase family 2 JN439_RS03440 PF03170 Bacterial cellulose synthase subunit JN439_RS03445 PF01270 Glycosyl hydrolases family 8 JN439_RS03450 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JN439_RS03455 PF02583 Metal-sensitive transcriptional repressor JN439_RS03470 PF17967 Pullulanase N2 domain JN439_RS03470 PF03714 Bacterial pullanase-associated domain JN439_RS03470 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JN439_RS03470 PF18494 Pullulanase Ins domain JN439_RS03470 PF11852 Domain of unknown function (DUF3372) JN439_RS03475 PF00403 Heavy-metal-associated domain JN439_RS03480 PF08534 Redoxin JN439_RS03485 PF00271 Helicase conserved C-terminal domain JN439_RS03485 PF00270 DEAD/DEAH box helicase JN439_RS03490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS03490 PF08447 PAS fold JN439_RS03500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS03510 PF10952 Protein of unknown function (DUF2753) JN439_RS03515 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS03530 PF00106 short chain dehydrogenase JN439_RS03535 PF00929 Exonuclease JN439_RS03540 PF03129 Anticodon binding domain JN439_RS03540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JN439_RS03540 PF04073 Aminoacyl-tRNA editing domain JN439_RS03545 PF12729 Four helix bundle sensory module for signal transduction JN439_RS03545 PF00672 HAMP domain JN439_RS03545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS03550 PF01330 RuvA N terminal domain JN439_RS03550 PF07499 RuvA, C-terminal domain JN439_RS03555 PF05491 RuvB C-terminal winged helix domain JN439_RS03555 PF05496 Holliday junction DNA helicase RuvB P-loop domain JN439_RS03555 PF17864 RuvB AAA lid domain JN439_RS03565 PF01654 Cytochrome bd terminal oxidase subunit I JN439_RS03570 PF02322 Cytochrome bd terminal oxidase subunit II JN439_RS03575 PF08173 Membrane bound YbgT-like protein JN439_RS03580 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) JN439_RS03585 PF03061 Thioesterase superfamily JN439_RS03590 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS03595 PF02472 Biopolymer transport protein ExbD/TolR JN439_RS03605 PF04052 TolB amino-terminal domain JN439_RS03605 PF07676 WD40-like Beta Propeller Repeat JN439_RS03610 PF00691 OmpA family JN439_RS03615 PF13174 Tetratricopeptide repeat JN439_RS03615 PF16331 TolA binding protein trimerisation JN439_RS03690 PF00672 HAMP domain JN439_RS03690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS03695 PF02445 Quinolinate synthetase A protein JN439_RS03700 PF01263 Aldose 1-epimerase JN439_RS03705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JN439_RS03705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JN439_RS03710 PF02446 4-alpha-glucanotransferase JN439_RS03715 PF00128 Alpha amylase, catalytic domain JN439_RS03715 PF02806 Alpha amylase, C-terminal all-beta domain JN439_RS03715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JN439_RS03720 PF00128 Alpha amylase, catalytic domain JN439_RS03720 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JN439_RS03725 PF01641 SelR domain JN439_RS03740 PF00293 NUDIX domain JN439_RS03745 PF16884 N-terminal domain of oxidoreductase JN439_RS03745 PF00107 Zinc-binding dehydrogenase JN439_RS03750 PF01047 MarR family JN439_RS03765 PF01037 Lrp/AsnC ligand binding domain JN439_RS03775 PF07690 Major Facilitator Superfamily JN439_RS03795 PF00209 Sodium:neurotransmitter symporter family JN439_RS03800 PF00209 Sodium:neurotransmitter symporter family JN439_RS03815 PF00155 Aminotransferase class I and II JN439_RS03815 PF00392 Bacterial regulatory proteins, gntR family JN439_RS03830 PF01177 Asp/Glu/Hydantoin racemase JN439_RS03840 PF00501 AMP-binding enzyme JN439_RS03850 PF00583 Acetyltransferase (GNAT) family JN439_RS03860 PF07728 AAA domain (dynein-related subfamily) JN439_RS03860 PF12592 Protein of unknown function (DUF3763) JN439_RS03860 PF17868 AAA lid domain JN439_RS03865 PF05762 VWA domain containing CoxE-like protein JN439_RS03870 PF00563 EAL domain JN439_RS03870 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS03870 PF08448 PAS fold JN439_RS03875 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS03875 PF00072 Response regulator receiver domain JN439_RS03880 PF03144 Elongation factor Tu domain 2 JN439_RS03880 PF16658 Class II release factor RF3, C-terminal domain JN439_RS03880 PF00009 Elongation factor Tu GTP binding domain JN439_RS03890 PF00583 Acetyltransferase (GNAT) family JN439_RS03895 PF12804 MobA-like NTP transferase domain JN439_RS03895 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS03900 PF00583 Acetyltransferase (GNAT) family JN439_RS03905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN439_RS03915 PF04480 Protein of unknown function (DUF559) JN439_RS03920 PF03466 LysR substrate binding domain JN439_RS03920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS03925 PF04371 Porphyromonas-type peptidyl-arginine deiminase JN439_RS03930 PF01425 Amidase JN439_RS03965 PF12833 Helix-turn-helix domain JN439_RS03965 PF02311 AraC-like ligand binding domain JN439_RS03970 PF00111 2Fe-2S iron-sulfur cluster binding domain JN439_RS03970 PF00970 Oxidoreductase FAD-binding domain JN439_RS03970 PF00175 Oxidoreductase NAD-binding domain JN439_RS03975 PF00271 Helicase conserved C-terminal domain JN439_RS03975 PF00270 DEAD/DEAH box helicase JN439_RS03980 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS03985 PF05643 Putative bacterial lipoprotein (DUF799) JN439_RS03995 PF03783 Curli production assembly/transport component CsgG JN439_RS04015 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JN439_RS04025 PF00005 ABC transporter JN439_RS04025 PF02687 FtsX-like permease family JN439_RS04025 PF12704 MacB-like periplasmic core domain JN439_RS04030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS04035 PF00072 Response regulator receiver domain JN439_RS04035 PF00486 Transcriptional regulatory protein, C terminal JN439_RS04040 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS04040 PF00672 HAMP domain JN439_RS04040 PF16527 Two-component sensor protein CpxA, periplasmic domain JN439_RS04060 PF00445 Ribonuclease T2 family JN439_RS04065 PF03060 Nitronate monooxygenase JN439_RS04090 PF01810 LysE type translocator JN439_RS04095 PF02954 Bacterial regulatory protein, Fis family JN439_RS04100 PF01207 Dihydrouridine synthase (Dus) JN439_RS04110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS04140 PF00072 Response regulator receiver domain JN439_RS04145 PF00854 POT family JN439_RS04150 PF00483 Nucleotidyl transferase JN439_RS04160 PF00459 Inositol monophosphatase family JN439_RS04165 PF01609 Transposase DDE domain JN439_RS04165 PF13006 Insertion element 4 transposase N-terminal JN439_RS04170 PF03795 YCII-related domain JN439_RS04175 PF04279 Intracellular septation protein A JN439_RS04180 PF00282 Pyridoxal-dependent decarboxylase conserved domain JN439_RS04185 PF03006 Haemolysin-III related JN439_RS04190 PF06826 Predicted Permease Membrane Region JN439_RS04190 PF02080 TrkA-C domain JN439_RS04200 PF07690 Major Facilitator Superfamily JN439_RS04205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS04205 PF03466 LysR substrate binding domain JN439_RS04210 PF04151 Bacterial pre-peptidase C-terminal domain JN439_RS04210 PF02868 Thermolysin metallopeptidase, alpha-helical domain JN439_RS04210 PF01447 Thermolysin metallopeptidase, catalytic domain JN439_RS04210 PF03413 Peptidase propeptide and YPEB domain JN439_RS04210 PF07504 Fungalysin/Thermolysin Propeptide Motif JN439_RS04215 PF13302 Acetyltransferase (GNAT) domain JN439_RS04220 PF13302 Acetyltransferase (GNAT) domain JN439_RS04230 PF04074 YhcH/YjgK/YiaL JN439_RS04235 PF00871 Acetokinase family JN439_RS04240 PF00924 Mechanosensitive ion channel JN439_RS04245 PF03734 L,D-transpeptidase catalytic domain JN439_RS04245 PF17969 L,D-transpeptidase C-terminal domain JN439_RS04250 PF00474 Sodium:solute symporter family JN439_RS04260 PF13411 MerR HTH family regulatory protein JN439_RS04300 PF02525 Flavodoxin-like fold JN439_RS04305 PF03466 LysR substrate binding domain JN439_RS04305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS04310 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JN439_RS04320 PF12848 ABC transporter JN439_RS04320 PF00005 ABC transporter JN439_RS04325 PF00571 CBS domain JN439_RS04325 PF00478 IMP dehydrogenase / GMP reductase domain JN439_RS04330 PF00267 Gram-negative porin JN439_RS04335 PF01584 CheW-like domain JN439_RS04335 PF00072 Response regulator receiver domain JN439_RS04340 PF13472 GDSL-like Lipase/Acylhydrolase family JN439_RS04345 PF00005 ABC transporter JN439_RS04355 PF01370 NAD dependent epimerase/dehydratase family JN439_RS04355 PF08338 Domain of unknown function (DUF1731) JN439_RS04360 PF12792 CSS motif domain associated with EAL JN439_RS04360 PF00563 EAL domain JN439_RS04365 PF00155 Aminotransferase class I and II JN439_RS04370 PF01483 Proprotein convertase P-domain JN439_RS04370 PF04389 Peptidase family M28 JN439_RS04375 PF02390 Putative methyltransferase JN439_RS04380 PF04320 Protein with unknown function (DUF469) JN439_RS04385 PF04960 Glutaminase JN439_RS04390 PF00581 Rhodanese-like domain JN439_RS04395 PF06004 Bacterial protein of unknown function (DUF903) JN439_RS04400 PF00664 ABC transporter transmembrane region JN439_RS04400 PF00005 ABC transporter JN439_RS04405 PF00561 alpha/beta hydrolase fold JN439_RS04425 PF06877 Regulator of ribonuclease activity B JN439_RS04430 PF00563 EAL domain JN439_RS04430 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS04430 PF03707 Bacterial signalling protein N terminal repeat JN439_RS04450 PF09905 DNA-binding protein VF530 JN439_RS04455 PF02666 Phosphatidylserine decarboxylase JN439_RS04460 PF03193 RsgA GTPase JN439_RS04465 PF00929 Exonuclease JN439_RS04505 PF00313 'Cold-shock' DNA-binding domain JN439_RS04515 PF00672 HAMP domain JN439_RS04515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS04520 PF00749 tRNA synthetases class I (E and Q), catalytic domain JN439_RS04555 PF06483 Chitinase C JN439_RS04555 PF00704 Glycosyl hydrolases family 18 JN439_RS04570 PF02472 Biopolymer transport protein ExbD/TolR JN439_RS04575 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS04580 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS04590 PF00593 TonB dependent receptor JN439_RS04590 PF07715 TonB-dependent Receptor Plug Domain JN439_RS04595 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS04600 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS04600 PF12911 N-terminal TM domain of oligopeptide transport permease C JN439_RS04605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS04610 PF00005 ABC transporter JN439_RS04610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS04615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS04615 PF00005 ABC transporter JN439_RS04620 PF01546 Peptidase family M20/M25/M40 JN439_RS04620 PF07687 Peptidase dimerisation domain JN439_RS04625 PF00156 Phosphoribosyl transferase domain JN439_RS04630 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JN439_RS04635 PF07417 Sigma factor-binding transcriptional regulator Crl JN439_RS04640 PF00696 Amino acid kinase family JN439_RS04640 PF01472 PUA domain JN439_RS04645 PF00171 Aldehyde dehydrogenase family JN439_RS04655 PF00582 Universal stress protein family JN439_RS04675 PF04324 BFD-like [2Fe-2S] binding domain JN439_RS04675 PF00384 Molybdopterin oxidoreductase JN439_RS04675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JN439_RS04675 PF01568 Molydopterin dinucleotide binding domain JN439_RS04680 PF10414 Sirohaem synthase dimerisation region JN439_RS04680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JN439_RS04680 PF14824 Sirohaem biosynthesis protein central JN439_RS04690 PF00005 ABC transporter JN439_RS04695 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS04700 PF00005 ABC transporter JN439_RS04705 PF18267 Rubredoxin NAD+ reductase C-terminal domain JN439_RS04705 PF13806 Rieske-like [2Fe-2S] domain JN439_RS04705 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS04705 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JN439_RS04705 PF04324 BFD-like [2Fe-2S] binding domain JN439_RS04705 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JN439_RS04710 PF13806 Rieske-like [2Fe-2S] domain JN439_RS04710 PF04324 BFD-like [2Fe-2S] binding domain JN439_RS04710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JN439_RS04710 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS04710 PF18267 Rubredoxin NAD+ reductase C-terminal domain JN439_RS04710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JN439_RS04715 PF00294 pfkB family carbohydrate kinase JN439_RS04720 PF04227 Indigoidine synthase A like protein JN439_RS04725 PF04227 Indigoidine synthase A like protein JN439_RS04735 PF00194 Eukaryotic-type carbonic anhydrase JN439_RS04750 PF00994 Probable molybdopterin binding domain JN439_RS04760 PF06738 Putative threonine/serine exporter JN439_RS04765 PF12821 Threonine/Serine exporter, ThrE JN439_RS04770 PF00186 Dihydrofolate reductase JN439_RS04775 PF00005 ABC transporter JN439_RS04775 PF00571 CBS domain JN439_RS04780 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS04785 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JN439_RS04790 PF01507 Phosphoadenosine phosphosulfate reductase family JN439_RS04795 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JN439_RS04795 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JN439_RS04800 PF00258 Flavodoxin JN439_RS04800 PF00175 Oxidoreductase NAD-binding domain JN439_RS04800 PF00667 FAD binding domain JN439_RS04805 PF02567 Phenazine biosynthesis-like protein JN439_RS04810 PF01336 OB-fold nucleic acid binding domain JN439_RS04810 PF00152 tRNA synthetases class II (D, K and N) JN439_RS04820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS04820 PF00672 HAMP domain JN439_RS04820 PF02743 Cache domain JN439_RS04825 PF03616 Sodium/glutamate symporter JN439_RS04830 PF17763 Glutaminase/Asparaginase C-terminal domain JN439_RS04830 PF00710 Asparaginase, N-terminal JN439_RS04835 PF07023 Protein of unknown function (DUF1315) JN439_RS04840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JN439_RS04840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JN439_RS04855 PF01343 Peptidase family S49 JN439_RS04860 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS04860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN439_RS04865 PF00881 Nitroreductase family JN439_RS04870 PF02743 Cache domain JN439_RS04870 PF00672 HAMP domain JN439_RS04870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS04875 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS04875 PF12464 Maltose acetyltransferase JN439_RS04885 PF08240 Alcohol dehydrogenase GroES-like domain JN439_RS04885 PF00107 Zinc-binding dehydrogenase JN439_RS04890 PF03466 LysR substrate binding domain JN439_RS04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS04895 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JN439_RS04895 PF00367 phosphotransferase system, EIIB JN439_RS04895 PF02378 Phosphotransferase system, EIIC JN439_RS04900 PF00474 Sodium:solute symporter family JN439_RS04905 PF06196 Protein of unknown function (DUF997) JN439_RS04910 PF00289 Biotin carboxylase, N-terminal domain JN439_RS04910 PF02785 Biotin carboxylase C-terminal domain JN439_RS04910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JN439_RS04915 PF00364 Biotin-requiring enzyme JN439_RS04920 PF01220 Dehydroquinase class II JN439_RS04925 PF16177 Acetyl-coenzyme A synthetase N-terminus JN439_RS04925 PF00501 AMP-binding enzyme JN439_RS04925 PF13193 AMP-binding enzyme C-terminal domain JN439_RS04930 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS04930 PF03707 Bacterial signalling protein N terminal repeat JN439_RS04930 PF00563 EAL domain JN439_RS04940 PF02613 Nitrate reductase delta subunit JN439_RS04950 PF00464 Serine hydroxymethyltransferase JN439_RS04960 PF03477 ATP cone domain JN439_RS04965 PF01872 RibD C-terminal domain JN439_RS04965 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JN439_RS04970 PF00677 Lumazine binding domain JN439_RS04975 PF00925 GTP cyclohydrolase II JN439_RS04975 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JN439_RS04980 PF00885 6,7-dimethyl-8-ribityllumazine synthase JN439_RS04985 PF01029 NusB family JN439_RS04990 PF02769 AIR synthase related protein, C-terminal domain JN439_RS04990 PF00586 AIR synthase related protein, N-terminal domain JN439_RS04995 PF04608 Phosphatidylglycerophosphatase A JN439_RS05000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS05000 PF00005 ABC transporter JN439_RS05005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS05010 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS05015 PF12911 N-terminal TM domain of oligopeptide transport permease C JN439_RS05015 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS05020 PF02779 Transketolase, pyrimidine binding domain JN439_RS05020 PF02780 Transketolase, C-terminal domain JN439_RS05020 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JN439_RS05025 PF00348 Polyprenyl synthetase JN439_RS05030 PF02609 Exonuclease VII small subunit JN439_RS05035 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS05040 PF00691 OmpA family JN439_RS05040 PF13677 Membrane MotB of proton-channel complex MotA/MotB JN439_RS05045 PF03449 Transcription elongation factor, N-terminal JN439_RS05045 PF01272 Transcription elongation factor, GreA/GreB, C-term JN439_RS05055 PF01985 CRS1 / YhbY (CRM) domain JN439_RS05060 PF01728 FtsJ-like methyltransferase JN439_RS05065 PF06480 FtsH Extracellular JN439_RS05065 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS05065 PF01434 Peptidase family M41 JN439_RS05065 PF17862 AAA+ lid domain JN439_RS05070 PF00809 Pterin binding enzyme JN439_RS05075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JN439_RS05075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JN439_RS05075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JN439_RS05075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JN439_RS05080 PF00121 Triosephosphate isomerase JN439_RS05085 PF03840 Preprotein translocase SecG subunit JN439_RS05100 PF17384 RimP C-terminal SH3 domain JN439_RS05100 PF02576 RimP N-terminal domain JN439_RS05105 PF13184 NusA-like KH domain JN439_RS05105 PF00575 S1 RNA binding domain JN439_RS05105 PF08529 NusA N-terminal domain JN439_RS05110 PF00009 Elongation factor Tu GTP binding domain JN439_RS05110 PF11987 Translation-initiation factor 2 JN439_RS05110 PF04760 Translation initiation factor IF-2, N-terminal region JN439_RS05110 PF08364 Bacterial translation initiation factor IF-2 associated region JN439_RS05115 PF02033 Ribosome-binding factor A JN439_RS05120 PF09157 Pseudouridine synthase II TruB, C-terminal JN439_RS05120 PF16198 tRNA pseudouridylate synthase B C-terminal domain JN439_RS05120 PF01509 TruB family pseudouridylate synthase (N terminal domain) JN439_RS05125 PF00312 Ribosomal protein S15 JN439_RS05130 PF00013 KH domain JN439_RS05130 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JN439_RS05130 PF01138 3' exoribonuclease family, domain 1 JN439_RS05130 PF03725 3' exoribonuclease family, domain 2 JN439_RS05130 PF00575 S1 RNA binding domain JN439_RS05135 PF07690 Major Facilitator Superfamily JN439_RS05140 PF02635 DsrE/DsrF-like family JN439_RS05145 PF06476 Protein of unknown function (DUF1090) JN439_RS05150 PF12838 4Fe-4S dicluster domain JN439_RS05155 PF16325 Peptidase family U32 C-terminal domain JN439_RS05155 PF01136 Peptidase family U32 JN439_RS05160 PF17969 L,D-transpeptidase C-terminal domain JN439_RS05160 PF03734 L,D-transpeptidase catalytic domain JN439_RS05175 PF01523 Putative modulator of DNA gyrase JN439_RS05185 PF01523 Putative modulator of DNA gyrase JN439_RS05190 PF00258 Flavodoxin JN439_RS05195 PF02899 Phage integrase, N-terminal SAM-like domain JN439_RS05195 PF00589 Phage integrase family JN439_RS05200 PF01741 Large-conductance mechanosensitive channel, MscL JN439_RS05210 PF02272 DHHA1 domain JN439_RS05210 PF17768 RecJ OB domain JN439_RS05210 PF01368 DHH family JN439_RS05215 PF13411 MerR HTH family regulatory protein JN439_RS05230 PF02508 Rnf-Nqr subunit, membrane protein JN439_RS05240 PF04055 Radical SAM superfamily JN439_RS05240 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JN439_RS05245 PF03099 Biotin/lipoate A/B protein ligase family JN439_RS05250 PF04359 Protein of unknown function (DUF493) JN439_RS05255 PF00768 D-alanyl-D-alanine carboxypeptidase JN439_RS05255 PF07943 Penicillin-binding protein 5, C-terminal domain JN439_RS05260 PF05036 Sporulation related domain JN439_RS05260 PF03330 Lytic transglycolase JN439_RS05265 PF13406 Transglycosylase SLT domain JN439_RS05270 PF01098 Cell cycle protein JN439_RS05275 PF03717 Penicillin-binding Protein dimerisation domain JN439_RS05275 PF00905 Penicillin binding protein transpeptidase domain JN439_RS05280 PF02590 Predicted SPOUT methyltransferase JN439_RS05290 PF01467 Cytidylyltransferase-like JN439_RS05310 PF13603 Leucyl-tRNA synthetase, Domain 2 JN439_RS05310 PF00133 tRNA synthetases class I (I, L, M and V) JN439_RS05310 PF08264 Anticodon-binding domain of tRNA JN439_RS05315 PF07295 Zinc-ribbon containing domain JN439_RS05320 PF00795 Carbon-nitrogen hydrolase JN439_RS05325 PF03471 Transporter associated domain JN439_RS05325 PF00571 CBS domain JN439_RS05330 PF02130 Uncharacterized protein family UPF0054 JN439_RS05335 PF02562 PhoH-like protein JN439_RS05340 PF00919 Uncharacterized protein family UPF0004 JN439_RS05340 PF01938 TRAM domain JN439_RS05340 PF04055 Radical SAM superfamily JN439_RS05345 PF01494 FAD binding domain JN439_RS05350 PF00857 Isochorismatase family JN439_RS05355 PF00313 'Cold-shock' DNA-binding domain JN439_RS05360 PF03466 LysR substrate binding domain JN439_RS05360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS05370 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS05385 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS05385 PF17152 Periplasmic sensor domain JN439_RS05395 PF13006 Insertion element 4 transposase N-terminal JN439_RS05395 PF01609 Transposase DDE domain JN439_RS05400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN439_RS05400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN439_RS05410 PF03171 2OG-Fe(II) oxygenase superfamily JN439_RS05410 PF14226 non-haem dioxygenase in morphine synthesis N-terminal JN439_RS05415 PF03180 NLPA lipoprotein JN439_RS05420 PF00005 ABC transporter JN439_RS05420 PF09383 NIL domain JN439_RS05425 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS05430 PF01132 Elongation factor P (EF-P) OB domain JN439_RS05430 PF08207 Elongation factor P (EF-P) KOW-like domain JN439_RS05430 PF09285 Elongation factor P, C-terminal JN439_RS05440 PF00478 IMP dehydrogenase / GMP reductase domain JN439_RS05445 PF08443 RimK-like ATP-grasp domain JN439_RS05445 PF18030 RimK PreATP-grasp domain JN439_RS05450 PF08521 Two-component sensor kinase N-terminal JN439_RS05450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS05450 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS05455 PF00072 Response regulator receiver domain JN439_RS05455 PF00486 Transcriptional regulatory protein, C terminal JN439_RS05465 PF00106 short chain dehydrogenase JN439_RS05475 PF00501 AMP-binding enzyme JN439_RS05485 PF13847 Methyltransferase domain JN439_RS05490 PF06224 Winged helix DNA-binding domain JN439_RS05505 PF02313 Fumarate reductase subunit D JN439_RS05510 PF02300 Fumarate reductase subunit C JN439_RS05515 PF13085 2Fe-2S iron-sulfur cluster binding domain JN439_RS05515 PF13183 4Fe-4S dicluster domain JN439_RS05520 PF00890 FAD binding domain JN439_RS05520 PF02910 Fumarate reductase flavoprotein C-term JN439_RS05525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS05525 PF02743 Cache domain JN439_RS05525 PF00672 HAMP domain JN439_RS05530 PF03009 Glycerophosphoryl diester phosphodiesterase family JN439_RS05535 PF00924 Mechanosensitive ion channel JN439_RS05535 PF12795 Mechanosensitive ion channel porin domain JN439_RS05535 PF12794 Mechanosensitive ion channel inner membrane domain 1 JN439_RS05545 PF01476 LysM domain JN439_RS05545 PF01551 Peptidase family M23 JN439_RS05545 PF08525 Opacity-associated protein A N-terminal motif JN439_RS05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS05560 PF03466 LysR substrate binding domain JN439_RS05575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS05575 PF03466 LysR substrate binding domain JN439_RS05580 PF17092 Penicillin-binding protein OB-like domain JN439_RS05580 PF00912 Transglycosylase JN439_RS05580 PF00905 Penicillin binding protein transpeptidase domain JN439_RS05590 PF11104 Type IV pilus assembly protein PilM; JN439_RS05600 PF04350 Pilus assembly protein, PilO JN439_RS05610 PF11741 AMIN domain JN439_RS05610 PF00263 Bacterial type II and III secretion system protein JN439_RS05610 PF03958 Bacterial type II/III secretion system short domain JN439_RS05610 PF07660 Secretin and TonB N terminus short domain JN439_RS05615 PF01202 Shikimate kinase JN439_RS05620 PF01761 3-dehydroquinate synthase JN439_RS05625 PF05036 Sporulation related domain JN439_RS05630 PF02086 D12 class N6 adenine-specific DNA methyltransferase JN439_RS05635 PF00834 Ribulose-phosphate 3 epimerase family JN439_RS05640 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS05645 PF00579 tRNA synthetases class I (W and Y) JN439_RS05655 PF00117 Glutamine amidotransferase class-I JN439_RS05660 PF00202 Aminotransferase class-III JN439_RS05665 PF04958 Arginine N-succinyltransferase beta subunit JN439_RS05670 PF00171 Aldehyde dehydrogenase family JN439_RS05690 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS05695 PF07690 Major Facilitator Superfamily JN439_RS05705 PF07859 alpha/beta hydrolase fold JN439_RS05710 PF04266 ASCH domain JN439_RS05715 PF02080 TrkA-C domain JN439_RS05715 PF03600 Citrate transporter JN439_RS05760 PF01926 50S ribosome-binding GTPase JN439_RS05760 PF06071 Protein of unknown function (DUF933) JN439_RS05765 PF01195 Peptidyl-tRNA hydrolase JN439_RS05770 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JN439_RS05770 PF14572 Phosphoribosyl synthetase-associated domain JN439_RS05780 PF00288 GHMP kinases N terminal domain JN439_RS05780 PF08544 GHMP kinases C terminal JN439_RS05785 PF03550 Outer membrane lipoprotein LolB JN439_RS05790 PF01488 Shikimate / quinate 5-dehydrogenase JN439_RS05790 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JN439_RS05790 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JN439_RS05795 PF03462 PCRF domain JN439_RS05795 PF00472 RF-1 domain JN439_RS05800 PF17827 PrmC N-terminal domain JN439_RS05800 PF13847 Methyltransferase domain JN439_RS05810 PF13369 Transglutaminase-like superfamily JN439_RS05815 PF00793 DAHP synthetase I family JN439_RS05820 PF00375 Sodium:dicarboxylate symporter family JN439_RS05825 PF01228 Glycine radical JN439_RS05830 PF03167 Uracil DNA glycosylase superfamily JN439_RS05845 PF00923 Transaldolase/Fructose-6-phosphate aldolase JN439_RS05850 PF01235 Sodium:alanine symporter family JN439_RS05855 PF00144 Beta-lactamase JN439_RS05860 PF07690 Major Facilitator Superfamily JN439_RS05865 PF03466 LysR substrate binding domain JN439_RS05865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS05870 PF03652 Holliday junction resolvase JN439_RS05875 PF02622 Uncharacterized ACR, COG1678 JN439_RS05880 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JN439_RS05880 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JN439_RS05885 PF04452 RNA methyltransferase JN439_RS05890 PF04231 Endonuclease I JN439_RS05895 PF17283 SprT-like zinc ribbon domain JN439_RS05895 PF10263 SprT-like family JN439_RS05900 PF02773 S-adenosylmethionine synthetase, C-terminal domain JN439_RS05900 PF02772 S-adenosylmethionine synthetase, central domain JN439_RS05900 PF00438 S-adenosylmethionine synthetase, N-terminal domain JN439_RS05905 PF02780 Transketolase, C-terminal domain JN439_RS05905 PF02779 Transketolase, pyrimidine binding domain JN439_RS05905 PF00456 Transketolase, thiamine diphosphate binding domain JN439_RS05920 PF01042 Endoribonuclease L-PSP JN439_RS05935 PF03702 Anhydro-N-acetylmuramic acid kinase JN439_RS05940 PF01476 LysM domain JN439_RS05940 PF01551 Peptidase family M23 JN439_RS05940 PF08525 Opacity-associated protein A N-terminal motif JN439_RS05945 PF00579 tRNA synthetases class I (W and Y) JN439_RS05950 PF01204 Trehalase JN439_RS05960 PF01161 Phosphatidylethanolamine-binding protein JN439_RS05965 PF00709 Adenylosuccinate synthetase JN439_RS05970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS05970 PF03466 LysR substrate binding domain JN439_RS05980 PF00155 Aminotransferase class I and II JN439_RS05985 PF07690 Major Facilitator Superfamily JN439_RS05990 PF03466 LysR substrate binding domain JN439_RS05990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS05995 PF00106 short chain dehydrogenase JN439_RS06000 PF08496 Peptidase family S49 N-terminal JN439_RS06000 PF01343 Peptidase family S49 JN439_RS06005 PF04996 Succinylarginine dihydrolase JN439_RS06010 PF01396 Topoisomerase DNA binding C4 zinc finger JN439_RS06010 PF01131 DNA topoisomerase JN439_RS06010 PF01751 Toprim domain JN439_RS06010 PF08272 Topoisomerase I zinc-ribbon-like JN439_RS06025 PF08447 PAS fold JN439_RS06025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS06035 PF01869 BadF/BadG/BcrA/BcrD ATPase family JN439_RS06045 PF00005 ABC transporter JN439_RS06045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS06050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS06050 PF00005 ABC transporter JN439_RS06055 PF12911 N-terminal TM domain of oligopeptide transport permease C JN439_RS06055 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS06060 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS06065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS06070 PF00919 Uncharacterized protein family UPF0004 JN439_RS06070 PF04055 Radical SAM superfamily JN439_RS06070 PF18693 TRAM domain JN439_RS06075 PF05598 Transposase domain (DUF772) JN439_RS06075 PF01609 Transposase DDE domain JN439_RS06100 PF00872 Transposase, Mutator family JN439_RS06140 PF05598 Transposase domain (DUF772) JN439_RS06140 PF01609 Transposase DDE domain JN439_RS06165 PF00072 Response regulator receiver domain JN439_RS06170 PF01022 Bacterial regulatory protein, arsR family JN439_RS06175 PF01758 Sodium Bile acid symporter family JN439_RS06180 PF03960 ArsC family JN439_RS06190 PF02049 Flagellar hook-basal body complex protein FliE JN439_RS06195 PF08345 Flagellar M-ring protein C-terminal JN439_RS06195 PF01514 Secretory protein of YscJ/FliF family JN439_RS06200 PF14841 FliG middle domain JN439_RS06200 PF14842 FliG N-terminal domain JN439_RS06200 PF01706 FliG C-terminal domain JN439_RS06210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN439_RS06210 PF18269 T3SS EscN ATPase C-terminal domain JN439_RS06230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JN439_RS06230 PF02154 Flagellar motor switch protein FliM JN439_RS06235 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JN439_RS06240 PF04347 Flagellar biosynthesis protein, FliO JN439_RS06245 PF00813 FliP family JN439_RS06250 PF01313 Bacterial export proteins, family 3 JN439_RS06255 PF01311 Bacterial export proteins, family 1 JN439_RS06260 PF01312 FlhB HrpN YscU SpaS Family JN439_RS06265 PF00771 FHIPEP family JN439_RS06270 PF00448 SRP54-type protein, GTPase domain JN439_RS06275 PF10609 NUBPL iron-transfer P-loop NTPase JN439_RS06280 PF04545 Sigma-70, region 4 JN439_RS06280 PF04539 Sigma-70 region 3 JN439_RS06280 PF04542 Sigma-70 region 2 JN439_RS06285 PF00072 Response regulator receiver domain JN439_RS06290 PF04344 Chemotaxis phosphatase, CheZ JN439_RS06295 PF02895 Signal transducing histidine kinase, homodimeric domain JN439_RS06295 PF01627 Hpt domain JN439_RS06295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS06295 PF00072 Response regulator receiver domain JN439_RS06295 PF01584 CheW-like domain JN439_RS06300 PF00072 Response regulator receiver domain JN439_RS06300 PF01339 CheB methylesterase JN439_RS06305 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS06310 PF13677 Membrane MotB of proton-channel complex MotA/MotB JN439_RS06310 PF00691 OmpA family JN439_RS06315 PF13614 AAA domain JN439_RS06325 PF01584 CheW-like domain JN439_RS06335 PF00005 ABC transporter JN439_RS06340 PF03379 CcmB protein JN439_RS06345 PF01578 Cytochrome C assembly protein JN439_RS06350 PF04995 Heme exporter protein D (CcmD) JN439_RS06355 PF03100 CcmE JN439_RS06360 PF01578 Cytochrome C assembly protein JN439_RS06360 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JN439_RS06365 PF08534 Redoxin JN439_RS06370 PF03918 Cytochrome C biogenesis protein JN439_RS06380 PF04333 MlaA lipoprotein JN439_RS06385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JN439_RS06385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JN439_RS06390 PF00462 Glutaredoxin JN439_RS06395 PF01029 NusB family JN439_RS06395 PF01189 16S rRNA methyltransferase RsmB/F JN439_RS06410 PF01243 Pyridoxamine 5'-phosphate oxidase JN439_RS06410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JN439_RS06420 PF01546 Peptidase family M20/M25/M40 JN439_RS06440 PF13508 Acetyltransferase (GNAT) domain JN439_RS06455 PF01081 KDPG and KHG aldolase JN439_RS06460 PF00294 pfkB family carbohydrate kinase JN439_RS06465 PF10688 Bacterial inner membrane protein JN439_RS06470 PF08666 SAF domain JN439_RS06470 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JN439_RS06475 PF01232 Mannitol dehydrogenase Rossmann domain JN439_RS06475 PF08125 Mannitol dehydrogenase C-terminal domain JN439_RS06480 PF02614 Glucuronate isomerase JN439_RS06485 PF03480 Bacterial extracellular solute-binding protein, family 7 JN439_RS06495 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JN439_RS06500 PF00392 Bacterial regulatory proteins, gntR family JN439_RS06500 PF07729 FCD domain JN439_RS06505 PF13438 Domain of unknown function (DUF4113) JN439_RS06505 PF11799 impB/mucB/samB family C-terminal domain JN439_RS06505 PF11798 IMS family HHH motif JN439_RS06505 PF00817 impB/mucB/samB family JN439_RS06510 PF00717 Peptidase S24-like JN439_RS06525 PF12161 HsdM N-terminal domain JN439_RS06525 PF02384 N-6 DNA Methylase JN439_RS06535 PF02463 RecF/RecN/SMC N terminal domain JN439_RS06545 PF18766 SWI2/SNF2 ATPase JN439_RS06545 PF11867 Domain of unknown function (DUF3387) JN439_RS06545 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JN439_RS06570 PF00271 Helicase conserved C-terminal domain JN439_RS06570 PF00176 SNF2 family N-terminal domain JN439_RS06570 PF12419 SNF2 Helicase protein JN439_RS06590 PF00589 Phage integrase family JN439_RS06590 PF13495 Phage integrase, N-terminal SAM-like domain JN439_RS06595 PF01609 Transposase DDE domain JN439_RS06595 PF05598 Transposase domain (DUF772) JN439_RS06600 PF09722 Protein of unknown function (DUF2384) JN439_RS06605 PF08007 Cupin superfamily protein JN439_RS06615 PF05711 Macrocin-O-methyltransferase (TylF) JN439_RS06635 PF00580 UvrD/REP helicase N-terminal domain JN439_RS06635 PF13361 UvrD-like helicase C-terminal domain JN439_RS06635 PF12462 DNA helicase IV / RNA helicase N terminal JN439_RS06635 PF00580 UvrD/REP helicase N-terminal domain JN439_RS06635 PF12462 DNA helicase IV / RNA helicase N terminal JN439_RS06635 PF13361 UvrD-like helicase C-terminal domain JN439_RS06675 PF01668 SmpB protein JN439_RS06680 PF03364 Polyketide cyclase / dehydrase and lipid transport JN439_RS06685 PF03658 RnfH family Ubiquitin JN439_RS06690 PF13460 NAD(P)H-binding JN439_RS06695 PF04355 SmpA / OmlA family JN439_RS06700 PF00465 Iron-containing alcohol dehydrogenase JN439_RS06705 PF01048 Phosphorylase superfamily JN439_RS06710 PF00849 RNA pseudouridylate synthase JN439_RS06715 PF01156 Inosine-uridine preferring nucleoside hydrolase JN439_RS06730 PF07509 Protein of unknown function (DUF1523) JN439_RS06735 PF00672 HAMP domain JN439_RS06735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS06740 PF01810 LysE type translocator JN439_RS06750 PF02080 TrkA-C domain JN439_RS06750 PF00999 Sodium/hydrogen exchanger family JN439_RS06750 PF03471 Transporter associated domain JN439_RS06760 PF02557 D-alanyl-D-alanine carboxypeptidase JN439_RS06765 PF01546 Peptidase family M20/M25/M40 JN439_RS06765 PF07687 Peptidase dimerisation domain JN439_RS06770 PF03960 ArsC family JN439_RS06775 PF13408 Recombinase zinc beta ribbon domain JN439_RS06775 PF00239 Resolvase, N terminal domain JN439_RS06775 PF07508 Recombinase JN439_RS06790 PF02796 Helix-turn-helix domain of resolvase JN439_RS06790 PF00239 Resolvase, N terminal domain JN439_RS06815 PF13808 DDE_Tnp_1-associated JN439_RS06815 PF01609 Transposase DDE domain JN439_RS06820 PF03606 C4-dicarboxylate anaerobic carrier JN439_RS06825 PF07687 Peptidase dimerisation domain JN439_RS06825 PF01546 Peptidase family M20/M25/M40 JN439_RS06835 PF03605 Anaerobic c4-dicarboxylate membrane transporter JN439_RS06840 PF01336 OB-fold nucleic acid binding domain JN439_RS06840 PF00152 tRNA synthetases class II (D, K and N) JN439_RS06855 PF00202 Aminotransferase class-III JN439_RS06860 PF06968 Biotin and Thiamin Synthesis associated domain JN439_RS06860 PF04055 Radical SAM superfamily JN439_RS06865 PF00155 Aminotransferase class I and II JN439_RS06870 PF12697 Alpha/beta hydrolase family JN439_RS06870 PF08241 Methyltransferase domain JN439_RS06880 PF01435 Peptidase family M48 JN439_RS06885 PF03473 MOSC domain JN439_RS06885 PF03476 MOSC N-terminal beta barrel domain JN439_RS06885 PF03476 MOSC N-terminal beta barrel domain JN439_RS06885 PF00111 2Fe-2S iron-sulfur cluster binding domain JN439_RS06885 PF00111 2Fe-2S iron-sulfur cluster binding domain JN439_RS06885 PF03473 MOSC domain JN439_RS06890 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JN439_RS06890 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JN439_RS06890 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS06895 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JN439_RS06895 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JN439_RS06895 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JN439_RS06895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JN439_RS06895 PF10371 Domain of unknown function JN439_RS06900 PF04325 Protein of unknown function (DUF465) JN439_RS06910 PF01554 MatE JN439_RS06930 PF00291 Pyridoxal-phosphate dependent enzyme JN439_RS06935 PF00465 Iron-containing alcohol dehydrogenase JN439_RS06945 PF00440 Bacterial regulatory proteins, tetR family JN439_RS06945 PF08359 YsiA-like protein, C-terminal region JN439_RS06950 PF00171 Aldehyde dehydrogenase family JN439_RS06960 PF00877 NlpC/P60 family JN439_RS06965 PF03466 LysR substrate binding domain JN439_RS06965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS06985 PF08003 Protein of unknown function (DUF1698) JN439_RS06990 PF13649 Methyltransferase domain JN439_RS06995 PF01904 Protein of unknown function DUF72 JN439_RS07000 PF01336 OB-fold nucleic acid binding domain JN439_RS07000 PF02938 GAD domain JN439_RS07000 PF00152 tRNA synthetases class II (D, K and N) JN439_RS07005 PF01709 Transcriptional regulator JN439_RS07010 PF00884 Sulfatase JN439_RS07010 PF08019 Phosphoethanolamine transferase EptA/EptB JN439_RS07020 PF01047 MarR family JN439_RS07020 PF00480 ROK family JN439_RS07025 PF01979 Amidohydrolase family JN439_RS07030 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JN439_RS07035 PF02378 Phosphotransferase system, EIIC JN439_RS07035 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JN439_RS07035 PF00367 phosphotransferase system, EIIB JN439_RS07040 PF03173 Putative carbohydrate binding domain JN439_RS07040 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JN439_RS07040 PF00728 Glycosyl hydrolase family 20, catalytic domain JN439_RS07040 PF02838 Glycosyl hydrolase family 20, domain 2 JN439_RS07045 PF00749 tRNA synthetases class I (E and Q), catalytic domain JN439_RS07045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JN439_RS07050 PF01475 Ferric uptake regulator family JN439_RS07060 PF00258 Flavodoxin JN439_RS07065 PF01402 Ribbon-helix-helix protein, copG family JN439_RS07075 PF00561 alpha/beta hydrolase fold JN439_RS07080 PF03925 SeqA protein C-terminal domain JN439_RS07080 PF17206 SeqA protein N-terminal domain JN439_RS07085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JN439_RS07085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JN439_RS07085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JN439_RS07085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JN439_RS07095 PF01047 MarR family JN439_RS07100 PF13406 Transglycosylase SLT domain JN439_RS07105 PF01066 CDP-alcohol phosphatidyltransferase JN439_RS07110 PF00005 ABC transporter JN439_RS07120 PF13416 Bacterial extracellular solute-binding protein JN439_RS07125 PF00403 Heavy-metal-associated domain JN439_RS07125 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS07125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN439_RS07130 PF02627 Carboxymuconolactone decarboxylase family JN439_RS07150 PF01103 Surface antigen JN439_RS07150 PF17243 POTRA domain TamA domain 1 JN439_RS07150 PF07244 Surface antigen variable number repeat JN439_RS07155 PF04357 TamB, inner membrane protein subunit of TAM complex JN439_RS07175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JN439_RS07180 PF03707 Bacterial signalling protein N terminal repeat JN439_RS07180 PF00563 EAL domain JN439_RS07180 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS07185 PF14718 Soluble lytic murein transglycosylase L domain JN439_RS07185 PF01464 Transglycosylase SLT domain JN439_RS07190 PF00356 Bacterial regulatory proteins, lacI family JN439_RS07200 PF03061 Thioesterase superfamily JN439_RS07210 PF03372 Endonuclease/Exonuclease/phosphatase family JN439_RS07220 PF03743 Bacterial conjugation TrbI-like protein JN439_RS07225 PF03524 Conjugal transfer protein JN439_RS07250 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JN439_RS07260 PF04956 TrbC/VIRB2 family JN439_RS07265 PF00437 Type II/IV secretion system protein JN439_RS07275 PF02534 Type IV secretory system Conjugative DNA transfer JN439_RS07285 PF03466 LysR substrate binding domain JN439_RS07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS07295 PF00440 Bacterial regulatory proteins, tetR family JN439_RS07300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS07305 PF00873 AcrB/AcrD/AcrF family JN439_RS07310 PF00893 Small Multidrug Resistance protein JN439_RS07330 PF10502 Signal peptidase, peptidase S26 JN439_RS07345 PF13614 AAA domain JN439_RS07375 PF05284 Protein of unknown function (DUF736) JN439_RS07380 PF02195 ParB-like nuclease domain JN439_RS07385 PF06067 Domain of unknown function (DUF932) JN439_RS07400 PF04002 RadC-like JAB domain JN439_RS07405 PF06250 YhcG PDDEXK nuclease domain JN439_RS07405 PF17761 DUF1016 N-terminal domain JN439_RS07415 PF01464 Transglycosylase SLT domain JN439_RS07415 PF01476 LysM domain JN439_RS07420 PF00753 Metallo-beta-lactamase superfamily JN439_RS07420 PF16123 Hydroxyacylglutathione hydrolase C-terminus JN439_RS07425 PF08241 Methyltransferase domain JN439_RS07430 PF00075 RNase H JN439_RS07435 PF00929 Exonuclease JN439_RS07445 PF11849 Domain of unknown function (DUF3369) JN439_RS07450 PF02770 Acyl-CoA dehydrogenase, middle domain JN439_RS07450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN439_RS07450 PF09317 Domain of unknown function (DUF1974) JN439_RS07450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN439_RS07455 PF13580 SIS domain JN439_RS07460 PF13230 Glutamine amidotransferases class-II JN439_RS07470 PF01933 Uncharacterised protein family UPF0052 JN439_RS07480 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS07480 PF09456 RcsC Alpha-Beta-Loop (ABL) JN439_RS07480 PF00072 Response regulator receiver domain JN439_RS07480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS07495 PF00072 Response regulator receiver domain JN439_RS07495 PF00196 Bacterial regulatory proteins, luxR family JN439_RS07500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS07500 PF00672 HAMP domain JN439_RS07500 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JN439_RS07500 PF07730 Histidine kinase JN439_RS07505 PF06463 Molybdenum Cofactor Synthesis C JN439_RS07505 PF04055 Radical SAM superfamily JN439_RS07510 PF12800 4Fe-4S binding domain JN439_RS07510 PF00037 4Fe-4S binding domain JN439_RS07510 PF13187 4Fe-4S dicluster domain JN439_RS07520 PF00384 Molybdopterin oxidoreductase JN439_RS07520 PF10518 TAT (twin-arginine translocation) pathway signal sequence JN439_RS07520 PF01568 Molydopterin dinucleotide binding domain JN439_RS07520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JN439_RS07525 PF12838 4Fe-4S dicluster domain JN439_RS07525 PF12800 4Fe-4S binding domain JN439_RS07530 PF13237 4Fe-4S dicluster domain JN439_RS07530 PF12801 4Fe-4S binding domain JN439_RS07535 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JN439_RS07540 PF03264 NapC/NirT cytochrome c family, N-terminal region JN439_RS07545 PF00994 Probable molybdopterin binding domain JN439_RS07550 PF01967 MoaC family JN439_RS07555 PF02597 ThiS family JN439_RS07560 PF02391 MoaE protein JN439_RS07570 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS07575 PF00005 ABC transporter JN439_RS07575 PF03459 TOBE domain JN439_RS07580 PF00561 alpha/beta hydrolase fold JN439_RS07590 PF06406 StbA protein JN439_RS07600 PF00899 ThiF family JN439_RS07605 PF03453 MoeA N-terminal region (domain I and II) JN439_RS07605 PF03454 MoeA C-terminal region (domain IV) JN439_RS07605 PF00994 Probable molybdopterin binding domain JN439_RS07610 PF01227 GTP cyclohydrolase I JN439_RS07615 PF00672 HAMP domain JN439_RS07615 PF17200 Single Cache domain 2 JN439_RS07615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS07620 PF00672 HAMP domain JN439_RS07620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS07625 PF01268 Formate--tetrahydrofolate ligase JN439_RS07635 PF03466 LysR substrate binding domain JN439_RS07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS07645 PF04264 YceI-like domain JN439_RS07655 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JN439_RS07655 PF05221 S-adenosyl-L-homocysteine hydrolase JN439_RS07670 PF01546 Peptidase family M20/M25/M40 JN439_RS07670 PF07687 Peptidase dimerisation domain JN439_RS07675 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JN439_RS07675 PF17944 Arginine decarboxylase C-terminal helical extension JN439_RS07675 PF17810 Arginine decarboxylase helical bundle domain JN439_RS07690 PF03707 Bacterial signalling protein N terminal repeat JN439_RS07690 PF00563 EAL domain JN439_RS07690 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS07695 PF00300 Histidine phosphatase superfamily (branch 1) JN439_RS07700 PF01844 HNH endonuclease JN439_RS07705 PF01609 Transposase DDE domain JN439_RS07705 PF13808 DDE_Tnp_1-associated JN439_RS07720 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JN439_RS07720 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JN439_RS07725 PF00849 RNA pseudouridylate synthase JN439_RS07725 PF01479 S4 domain JN439_RS07730 PF07690 Major Facilitator Superfamily JN439_RS07740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS07740 PF03466 LysR substrate binding domain JN439_RS07750 PF10689 Protein of unknown function (DUF2496) JN439_RS07760 PF04391 Protein of unknown function (DUF533) JN439_RS07770 PF00392 Bacterial regulatory proteins, gntR family JN439_RS07770 PF00155 Aminotransferase class I and II JN439_RS07775 PF01654 Cytochrome bd terminal oxidase subunit I JN439_RS07780 PF02322 Cytochrome bd terminal oxidase subunit II JN439_RS07790 PF07690 Major Facilitator Superfamily JN439_RS07795 PF00248 Aldo/keto reductase family JN439_RS07815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS07815 PF03466 LysR substrate binding domain JN439_RS07820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JN439_RS07820 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JN439_RS07825 PF00230 Major intrinsic protein JN439_RS07835 PF13358 DDE superfamily endonuclease JN439_RS07835 PF13592 Winged helix-turn helix JN439_RS07845 PF08220 DeoR-like helix-turn-helix domain JN439_RS07845 PF00455 DeoR C terminal sensor domain JN439_RS07850 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JN439_RS07850 PF01266 FAD dependent oxidoreductase JN439_RS07855 PF03009 Glycerophosphoryl diester phosphodiesterase family JN439_RS07860 PF00793 DAHP synthetase I family JN439_RS07865 PF02153 Prephenate dehydrogenase JN439_RS07865 PF01817 Chorismate mutase type II JN439_RS07870 PF03466 LysR substrate binding domain JN439_RS07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS07875 PF04219 Protein of unknown function, DUF JN439_RS07880 PF03974 Ecotin JN439_RS07895 PF12323 Helix-turn-helix domain JN439_RS07895 PF07282 Putative transposase DNA-binding domain JN439_RS07895 PF01385 Probable transposase JN439_RS07905 PF00593 TonB dependent receptor JN439_RS07905 PF07715 TonB-dependent Receptor Plug Domain JN439_RS07910 PF00884 Sulfatase JN439_RS07910 PF11893 Domain of unknown function (DUF3413) JN439_RS07915 PF07208 Protein of unknown function (DUF1414) JN439_RS07920 PF04245 37-kD nucleoid-associated bacterial protein JN439_RS07925 PF01547 Bacterial extracellular solute-binding protein JN439_RS07930 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS07930 PF14785 Maltose transport system permease protein MalF P2 domain JN439_RS07935 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS07940 PF00005 ABC transporter JN439_RS07940 PF08402 TOBE domain JN439_RS07945 PF03976 Polyphosphate kinase 2 (PPK2) JN439_RS07950 PF00561 alpha/beta hydrolase fold JN439_RS07960 PF01594 AI-2E family transporter JN439_RS07965 PF01206 Sulfurtransferase TusA JN439_RS07970 PF13181 Tetratricopeptide repeat JN439_RS07970 PF01435 Peptidase family M48 JN439_RS07975 PF00578 AhpC/TSA family JN439_RS07980 PF03960 ArsC family JN439_RS07995 PF04336 Acyl carrier protein phosphodiesterase JN439_RS08005 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS08010 PF01979 Amidohydrolase family JN439_RS08015 PF03956 Lysine exporter LysO JN439_RS08020 PF00005 ABC transporter JN439_RS08025 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS08030 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS08035 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS08045 PF04055 Radical SAM superfamily JN439_RS08050 PF00563 EAL domain JN439_RS08050 PF03707 Bacterial signalling protein N terminal repeat JN439_RS08050 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS08055 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS08055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN439_RS08070 PF00529 HlyD membrane-fusion protein of T1SS JN439_RS08070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS08075 PF02321 Outer membrane efflux protein JN439_RS08080 PF01594 AI-2E family transporter JN439_RS08085 PF07678 A-macroglobulin TED domain JN439_RS08085 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JN439_RS08085 PF17962 Bacterial macroglobulin domain 6 JN439_RS08085 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JN439_RS08085 PF00207 Alpha-2-macroglobulin family JN439_RS08085 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JN439_RS08085 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JN439_RS08085 PF01835 MG2 domain JN439_RS08085 PF07703 Alpha-2-macroglobulin bait region domain JN439_RS08090 PF00912 Transglycosylase JN439_RS08090 PF06832 Penicillin-Binding Protein C-terminus Family JN439_RS08090 PF00905 Penicillin binding protein transpeptidase domain JN439_RS08100 PF02568 Thiamine biosynthesis protein (ThiI) JN439_RS08100 PF02926 THUMP domain JN439_RS08110 PF03458 UPF0126 domain JN439_RS08115 PF07196 Flagellin hook IN motif JN439_RS08115 PF00669 Bacterial flagellin N-terminal helical region JN439_RS08115 PF00700 Bacterial flagellin C-terminal helical region JN439_RS08120 PF00700 Bacterial flagellin C-terminal helical region JN439_RS08120 PF07196 Flagellin hook IN motif JN439_RS08120 PF00669 Bacterial flagellin N-terminal helical region JN439_RS08130 PF02465 Flagellar hook-associated protein 2 N-terminus JN439_RS08130 PF07195 Flagellar hook-associated protein 2 C-terminus JN439_RS08130 PF07196 Flagellin hook IN motif JN439_RS08135 PF02561 Flagellar protein FliS JN439_RS08160 PF03102 NeuB family JN439_RS08160 PF08666 SAF domain JN439_RS08170 PF02348 Cytidylyltransferase JN439_RS08190 PF00501 AMP-binding enzyme JN439_RS08190 PF13193 AMP-binding enzyme C-terminal domain JN439_RS08205 PF00535 Glycosyl transferase family 2 JN439_RS08210 PF03275 UDP-galactopyranose mutase JN439_RS08220 PF00535 Glycosyl transferase family 2 JN439_RS08250 PF01209 ubiE/COQ5 methyltransferase family JN439_RS08255 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JN439_RS08260 PF02719 Polysaccharide biosynthesis protein JN439_RS08265 PF01497 Periplasmic binding protein JN439_RS08275 PF01048 Phosphorylase superfamily JN439_RS08280 PF02535 ZIP Zinc transporter JN439_RS08285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS08285 PF00672 HAMP domain JN439_RS08285 PF12729 Four helix bundle sensory module for signal transduction JN439_RS08290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN439_RS08295 PF10576 Iron-sulfur binding domain of endonuclease III JN439_RS08295 PF00633 Helix-hairpin-helix motif JN439_RS08295 PF00730 HhH-GPD superfamily base excision DNA repair protein JN439_RS08300 PF02508 Rnf-Nqr subunit, membrane protein JN439_RS08305 PF04205 FMN-binding domain JN439_RS08310 PF03116 NQR2, RnfD, RnfE family JN439_RS08320 PF04060 Putative Fe-S cluster JN439_RS08325 PF02508 Rnf-Nqr subunit, membrane protein JN439_RS08330 PF01385 Probable transposase JN439_RS08330 PF12323 Helix-turn-helix domain JN439_RS08330 PF07282 Putative transposase DNA-binding domain JN439_RS08340 PF00892 EamA-like transporter family JN439_RS08350 PF08447 PAS fold JN439_RS08350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS08350 PF13426 PAS domain JN439_RS08355 PF05598 Transposase domain (DUF772) JN439_RS08355 PF01609 Transposase DDE domain JN439_RS08360 PF01695 IstB-like ATP binding protein JN439_RS08365 PF00665 Integrase core domain JN439_RS08395 PF01609 Transposase DDE domain JN439_RS08395 PF13808 DDE_Tnp_1-associated JN439_RS08425 PF07055 Enoyl reductase FAD binding domain JN439_RS08425 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JN439_RS08425 PF12241 Trans-2-enoyl-CoA reductase catalytic region JN439_RS08445 PF00155 Aminotransferase class I and II JN439_RS08455 PF00462 Glutaredoxin JN439_RS08460 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JN439_RS08465 PF00271 Helicase conserved C-terminal domain JN439_RS08465 PF04851 Type III restriction enzyme, res subunit JN439_RS08470 PF00529 HlyD membrane-fusion protein of T1SS JN439_RS08470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS08475 PF11742 Protein of unknown function (DUF3302) JN439_RS08485 PF12323 Helix-turn-helix domain JN439_RS08485 PF07282 Putative transposase DNA-binding domain JN439_RS08485 PF01385 Probable transposase JN439_RS08490 PF12794 Mechanosensitive ion channel inner membrane domain 1 JN439_RS08490 PF12795 Mechanosensitive ion channel porin domain JN439_RS08490 PF00924 Mechanosensitive ion channel JN439_RS08495 PF02554 Carbon starvation protein CstA JN439_RS08500 PF04397 LytTr DNA-binding domain JN439_RS08500 PF00072 Response regulator receiver domain JN439_RS08505 PF07694 5TMR of 5TMR-LYT JN439_RS08505 PF06580 Histidine kinase JN439_RS08510 PF00072 Response regulator receiver domain JN439_RS08515 PF00171 Aldehyde dehydrogenase family JN439_RS08515 PF00465 Iron-containing alcohol dehydrogenase JN439_RS08520 PF01914 MarC family integral membrane protein JN439_RS08525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS08530 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS08535 PF12911 N-terminal TM domain of oligopeptide transport permease C JN439_RS08535 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS08540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS08540 PF00005 ABC transporter JN439_RS08545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS08545 PF00005 ABC transporter JN439_RS08550 PF03741 Integral membrane protein TerC family JN439_RS08555 PF01168 Alanine racemase, N-terminal domain JN439_RS08555 PF00842 Alanine racemase, C-terminal domain JN439_RS08565 PF00375 Sodium:dicarboxylate symporter family JN439_RS08585 PF01979 Amidohydrolase family JN439_RS08595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS08595 PF00672 HAMP domain JN439_RS08600 PF01230 HIT domain JN439_RS08635 PF07549 SecD/SecF GG Motif JN439_RS08635 PF13721 SecD export protein N-terminal TM region JN439_RS08635 PF02355 Protein export membrane protein JN439_RS08640 PF02355 Protein export membrane protein JN439_RS08640 PF07549 SecD/SecF GG Motif JN439_RS08645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS08645 PF08447 PAS fold JN439_RS08645 PF13426 PAS domain JN439_RS08655 PF05661 Protein of unknown function (DUF808) JN439_RS08660 PF08439 Oligopeptidase F JN439_RS08660 PF01432 Peptidase family M3 JN439_RS08665 PF01432 Peptidase family M3 JN439_RS08665 PF08439 Oligopeptidase F JN439_RS08670 PF05728 Uncharacterised protein family (UPF0227) JN439_RS08675 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS08680 PF01906 Putative heavy-metal-binding JN439_RS08685 PF00884 Sulfatase JN439_RS08695 PF00696 Amino acid kinase family JN439_RS08695 PF01842 ACT domain JN439_RS08700 PF00696 Amino acid kinase family JN439_RS08700 PF00583 Acetyltransferase (GNAT) family JN439_RS08705 PF01625 Peptide methionine sulfoxide reductase JN439_RS08730 PF03466 LysR substrate binding domain JN439_RS08730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS08735 PF02652 L-lactate permease JN439_RS08740 PF02754 Cysteine-rich domain JN439_RS08745 PF02589 LUD domain JN439_RS08745 PF11870 Domain of unknown function (DUF3390) JN439_RS08745 PF13183 4Fe-4S dicluster domain JN439_RS08750 PF02589 LUD domain JN439_RS08755 PF02913 FAD linked oxidases, C-terminal domain JN439_RS08755 PF01565 FAD binding domain JN439_RS08765 PF02687 FtsX-like permease family JN439_RS08765 PF12704 MacB-like periplasmic core domain JN439_RS08770 PF00005 ABC transporter JN439_RS08780 PF03600 Citrate transporter JN439_RS08790 PF07690 Major Facilitator Superfamily JN439_RS08810 PF01593 Flavin containing amine oxidoreductase JN439_RS08815 PF03239 Iron permease FTR1 family JN439_RS08845 PF14403 Circularly permuted ATP-grasp type 2 JN439_RS08845 PF04168 A predicted alpha-helical domain with a conserved ER motif. JN439_RS08850 PF14403 Circularly permuted ATP-grasp type 2 JN439_RS08855 PF13006 Insertion element 4 transposase N-terminal JN439_RS08855 PF01609 Transposase DDE domain JN439_RS08860 PF00106 short chain dehydrogenase JN439_RS08880 PF01740 STAS domain JN439_RS08880 PF00916 Sulfate permease family JN439_RS08900 PF04002 RadC-like JAB domain JN439_RS08905 PF00239 Resolvase, N terminal domain JN439_RS08905 PF02796 Helix-turn-helix domain of resolvase JN439_RS08925 PF01168 Alanine racemase, N-terminal domain JN439_RS08925 PF00842 Alanine racemase, C-terminal domain JN439_RS08930 PF02132 RecR protein JN439_RS08930 PF13662 Toprim domain JN439_RS08935 PF00183 Hsp90 protein JN439_RS08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS08940 PF05191 Adenylate kinase, active site lid JN439_RS08945 PF00762 Ferrochelatase JN439_RS08950 PF01124 MAPEG family JN439_RS08955 PF00294 pfkB family carbohydrate kinase JN439_RS08970 PF01385 Probable transposase JN439_RS08970 PF12323 Helix-turn-helix domain JN439_RS08970 PF07282 Putative transposase DNA-binding domain JN439_RS08990 PF00563 EAL domain JN439_RS08990 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS08990 PF03707 Bacterial signalling protein N terminal repeat JN439_RS08995 PF00483 Nucleotidyl transferase JN439_RS09005 PF07273 Protein of unknown function (DUF1439) JN439_RS09010 PF00425 chorismate binding enzyme JN439_RS09015 PF00501 AMP-binding enzyme JN439_RS09015 PF13193 AMP-binding enzyme C-terminal domain JN439_RS09020 PF00857 Isochorismatase family JN439_RS09020 PF00550 Phosphopantetheine attachment site JN439_RS09025 PF00501 AMP-binding enzyme JN439_RS09025 PF00975 Thioesterase domain JN439_RS09025 PF13193 AMP-binding enzyme C-terminal domain JN439_RS09025 PF00668 Condensation domain JN439_RS09025 PF00550 Phosphopantetheine attachment site JN439_RS09040 PF00668 Condensation domain JN439_RS09040 PF13193 AMP-binding enzyme C-terminal domain JN439_RS09040 PF00975 Thioesterase domain JN439_RS09040 PF00550 Phosphopantetheine attachment site JN439_RS09040 PF00501 AMP-binding enzyme JN439_RS09045 PF01497 Periplasmic binding protein JN439_RS09050 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JN439_RS09050 PF01648 4'-phosphopantetheinyl transferase superfamily JN439_RS09055 PF01609 Transposase DDE domain JN439_RS09055 PF13006 Insertion element 4 transposase N-terminal JN439_RS09065 PF00005 ABC transporter JN439_RS09070 PF01032 FecCD transport family JN439_RS09075 PF01032 FecCD transport family JN439_RS09080 PF00593 TonB dependent receptor JN439_RS09080 PF07715 TonB-dependent Receptor Plug Domain JN439_RS09095 PF11143 Protein of unknown function (DUF2919) JN439_RS09100 PF01544 CorA-like Mg2+ transporter protein JN439_RS09110 PF01012 Electron transfer flavoprotein domain JN439_RS09115 PF01012 Electron transfer flavoprotein domain JN439_RS09115 PF00766 Electron transfer flavoprotein FAD-binding domain JN439_RS09120 PF00266 Aminotransferase class-V JN439_RS09125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JN439_RS09130 PF00793 DAHP synthetase I family JN439_RS09135 PF03741 Integral membrane protein TerC family JN439_RS09145 PF08891 YfcL protein JN439_RS09150 PF00501 AMP-binding enzyme JN439_RS09155 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JN439_RS09155 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JN439_RS09160 PF04172 LrgB-like family JN439_RS09165 PF03788 LrgA family JN439_RS09180 PF08411 Exonuclease C-terminal JN439_RS09180 PF00929 Exonuclease JN439_RS09185 PF00149 Calcineurin-like phosphoesterase JN439_RS09190 PF09924 Uncharacterised conserved protein (DUF2156) JN439_RS09190 PF03706 Lysylphosphatidylglycerol synthase TM region JN439_RS09200 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS09205 PF00795 Carbon-nitrogen hydrolase JN439_RS09210 PF00155 Aminotransferase class I and II JN439_RS09215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS09215 PF03466 LysR substrate binding domain JN439_RS09220 PF02610 L-arabinose isomerase JN439_RS09220 PF11762 L-arabinose isomerase C-terminal domain JN439_RS09225 PF00596 Class II Aldolase and Adducin N-terminal domain JN439_RS09230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JN439_RS09235 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JN439_RS09240 PF00005 ABC transporter JN439_RS09245 PF02653 Branched-chain amino acid transport system / permease component JN439_RS09250 PF02311 AraC-like ligand binding domain JN439_RS09250 PF12833 Helix-turn-helix domain JN439_RS09255 PF00444 Ribosomal protein L36 JN439_RS09260 PF01197 Ribosomal protein L31 JN439_RS09275 PF01863 Protein of unknown function DUF45 JN439_RS09290 PF03606 C4-dicarboxylate anaerobic carrier JN439_RS09300 PF01266 FAD dependent oxidoreductase JN439_RS09300 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JN439_RS09305 PF02801 Beta-ketoacyl synthase, C-terminal domain JN439_RS09305 PF00109 Beta-ketoacyl synthase, N-terminal domain JN439_RS09320 PF00285 Citrate synthase, C-terminal domain JN439_RS09325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JN439_RS09330 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JN439_RS09335 PF02910 Fumarate reductase flavoprotein C-term JN439_RS09335 PF00890 FAD binding domain JN439_RS09340 PF13085 2Fe-2S iron-sulfur cluster binding domain JN439_RS09345 PF16870 2-oxoglutarate dehydrogenase C-terminal JN439_RS09345 PF00676 Dehydrogenase E1 component JN439_RS09345 PF02779 Transketolase, pyrimidine binding domain JN439_RS09345 PF16078 2-oxoglutarate dehydrogenase N-terminus JN439_RS09350 PF00364 Biotin-requiring enzyme JN439_RS09350 PF02817 e3 binding domain JN439_RS09350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JN439_RS09355 PF00549 CoA-ligase JN439_RS09355 PF08442 ATP-grasp domain JN439_RS09360 PF00549 CoA-ligase JN439_RS09360 PF02629 CoA binding domain JN439_RS09385 PF03692 Putative zinc- or iron-chelating domain JN439_RS09390 PF02901 Pyruvate formate lyase-like JN439_RS09390 PF01228 Glycine radical JN439_RS09395 PF01226 Formate/nitrite transporter JN439_RS09400 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JN439_RS09400 PF18381 YcaO cyclodehydratase C-terminal domain JN439_RS09410 PF00893 Small Multidrug Resistance protein JN439_RS09415 PF02774 Semialdehyde dehydrogenase, dimerisation domain JN439_RS09415 PF01118 Semialdehyde dehydrogenase, NAD binding domain JN439_RS09420 PF00313 'Cold-shock' DNA-binding domain JN439_RS09425 PF02617 ATP-dependent Clp protease adaptor protein ClpS JN439_RS09430 PF17871 AAA lid domain JN439_RS09430 PF07724 AAA domain (Cdc48 subfamily) JN439_RS09430 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS09430 PF02861 Clp amino terminal domain, pathogenicity island component JN439_RS09430 PF10431 C-terminal, D2-small domain, of ClpB protein JN439_RS09435 PF01176 Translation initiation factor 1A / IF-1 JN439_RS09440 PF04377 Arginine-tRNA-protein transferase, C terminus JN439_RS09440 PF04376 Arginine-tRNA-protein transferase, N terminus JN439_RS09445 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JN439_RS09450 PF05433 Glycine zipper 2TM domain JN439_RS09455 PF05230 MASE2 domain JN439_RS09455 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS09460 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS09465 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JN439_RS09465 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JN439_RS09470 PF01037 Lrp/AsnC ligand binding domain JN439_RS09475 PF17854 FtsK alpha domain JN439_RS09475 PF01580 FtsK/SpoIIIE family JN439_RS09475 PF09397 Ftsk gamma domain JN439_RS09475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JN439_RS09480 PF03548 Outer membrane lipoprotein carrier protein LolA JN439_RS09485 PF12002 MgsA AAA+ ATPase C terminal JN439_RS09485 PF16193 AAA C-terminal domain JN439_RS09485 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS09490 PF02403 Seryl-tRNA synthetase N-terminal domain JN439_RS09490 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JN439_RS09495 PF02674 Colicin V production protein JN439_RS09500 PF00156 Phosphoribosyl transferase domain JN439_RS09505 PF00232 Glycosyl hydrolase family 1 JN439_RS09510 PF02378 Phosphotransferase system, EIIC JN439_RS09510 PF00367 phosphotransferase system, EIIB JN439_RS09515 PF00356 Bacterial regulatory proteins, lacI family JN439_RS09520 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JN439_RS09525 PF00005 ABC transporter JN439_RS09530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN439_RS09530 PF00005 ABC transporter JN439_RS09535 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS09535 PF12911 N-terminal TM domain of oligopeptide transport permease C JN439_RS09540 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS09545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS09550 PF02954 Bacterial regulatory protein, Fis family JN439_RS09550 PF00158 Sigma-54 interaction domain JN439_RS09555 PF04012 PspA/IM30 family JN439_RS09560 PF06667 Phage shock protein B JN439_RS09570 PF04317 YcjX-like family, DUF463 JN439_RS09575 PF05128 Domain of unknown function (DUF697) JN439_RS09580 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JN439_RS09585 PF01329 Pterin 4 alpha carbinolamine dehydratase JN439_RS09590 PF00158 Sigma-54 interaction domain JN439_RS09590 PF18024 Helix-turn-helix domain JN439_RS09595 PF13689 YfiR/HmsC-like JN439_RS09605 PF00691 OmpA family JN439_RS09615 PF13742 OB-fold nucleic acid binding domain JN439_RS09615 PF02601 Exonuclease VII, large subunit JN439_RS09635 PF00665 Integrase core domain JN439_RS09640 PF11426 Tn7 transposition regulator TnsC JN439_RS09640 PF13401 AAA domain JN439_RS09645 PF15978 Tn7-like transposition protein D JN439_RS09645 PF06527 TniQ JN439_RS09675 PF05114 Protein of unknown function (DUF692) JN439_RS09695 PF00174 Oxidoreductase molybdopterin binding domain JN439_RS09700 PF01794 Ferric reductase like transmembrane component JN439_RS09710 PF04542 Sigma-70 region 2 JN439_RS09710 PF08281 Sigma-70, region 4 JN439_RS09720 PF01609 Transposase DDE domain JN439_RS09720 PF05598 Transposase domain (DUF772) JN439_RS09735 PF00571 CBS domain JN439_RS09735 PF00478 IMP dehydrogenase / GMP reductase domain JN439_RS09740 PF00958 GMP synthase C terminal domain JN439_RS09740 PF00117 Glutamine amidotransferase class-I JN439_RS09740 PF02540 NAD synthase JN439_RS09745 PF02805 Metal binding domain of Ada JN439_RS09745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JN439_RS09745 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JN439_RS09745 PF12833 Helix-turn-helix domain JN439_RS09765 PF01047 MarR family JN439_RS09775 PF05724 Thiopurine S-methyltransferase (TPMT) JN439_RS09780 PF00675 Insulinase (Peptidase family M16) JN439_RS09780 PF05193 Peptidase M16 inactive domain JN439_RS09780 PF16187 Middle or third domain of peptidase_M16 JN439_RS09785 PF00300 Histidine phosphatase superfamily (branch 1) JN439_RS09795 PF00892 EamA-like transporter family JN439_RS09800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS09810 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JN439_RS09815 PF02559 CarD-like/TRCF domain JN439_RS09815 PF00271 Helicase conserved C-terminal domain JN439_RS09815 PF03461 TRCF domain JN439_RS09815 PF17757 UvrB interaction domain JN439_RS09815 PF00270 DEAD/DEAH box helicase JN439_RS09825 PF02687 FtsX-like permease family JN439_RS09825 PF12704 MacB-like periplasmic core domain JN439_RS09830 PF00005 ABC transporter JN439_RS09835 PF02687 FtsX-like permease family JN439_RS09835 PF12704 MacB-like periplasmic core domain JN439_RS09850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN439_RS09850 PF05698 Bacterial trigger factor protein (TF) C-terminus JN439_RS09850 PF05697 Bacterial trigger factor protein (TF) JN439_RS09855 PF00574 Clp protease JN439_RS09860 PF07724 AAA domain (Cdc48 subfamily) JN439_RS09860 PF06689 ClpX C4-type zinc finger JN439_RS09860 PF10431 C-terminal, D2-small domain, of ClpB protein JN439_RS09865 PF05362 Lon protease (S16) C-terminal proteolytic domain JN439_RS09865 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS09865 PF02190 ATP-dependent protease La (LON) substrate-binding domain JN439_RS09870 PF00216 Bacterial DNA-binding protein JN439_RS09875 PF13145 PPIC-type PPIASE domain JN439_RS09880 PF00005 ABC transporter JN439_RS09880 PF12848 ABC transporter JN439_RS09885 PF00474 Sodium:solute symporter family JN439_RS09890 PF04341 Protein of unknown function, DUF485 JN439_RS09905 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS09910 PF01235 Sodium:alanine symporter family JN439_RS09920 PF06167 Glucose-regulated metallo-peptidase M90 JN439_RS09925 PF01184 GPR1/FUN34/yaaH family JN439_RS09935 PF09278 MerR, DNA binding JN439_RS09935 PF00376 MerR family regulatory protein JN439_RS09945 PF00289 Biotin carboxylase, N-terminal domain JN439_RS09945 PF02785 Biotin carboxylase C-terminal domain JN439_RS09945 PF00364 Biotin-requiring enzyme JN439_RS09945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JN439_RS09950 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS09955 PF01039 Carboxyl transferase domain JN439_RS09960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN439_RS09960 PF02770 Acyl-CoA dehydrogenase, middle domain JN439_RS09960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN439_RS09965 PF00171 Aldehyde dehydrogenase family JN439_RS09970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN439_RS09970 PF02770 Acyl-CoA dehydrogenase, middle domain JN439_RS09970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN439_RS09975 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS09980 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS09985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JN439_RS09985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JN439_RS09995 PF13520 Amino acid permease JN439_RS10000 PF01925 Sulfite exporter TauE/SafE JN439_RS10010 PF12706 Beta-lactamase superfamily domain JN439_RS10015 PF02653 Branched-chain amino acid transport system / permease component JN439_RS10020 PF02653 Branched-chain amino acid transport system / permease component JN439_RS10025 PF00005 ABC transporter JN439_RS10030 PF01609 Transposase DDE domain JN439_RS10035 PF13407 Periplasmic binding protein domain JN439_RS10040 PF03466 LysR substrate binding domain JN439_RS10040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS10055 PF02634 FdhD/NarQ family JN439_RS10060 PF00384 Molybdopterin oxidoreductase JN439_RS10070 PF00072 Response regulator receiver domain JN439_RS10070 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS10075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS10075 PF03466 LysR substrate binding domain JN439_RS10080 PF00232 Glycosyl hydrolase family 1 JN439_RS10090 PF03466 LysR substrate binding domain JN439_RS10090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS10100 PF00933 Glycosyl hydrolase family 3 N terminal domain JN439_RS10105 PF01261 Xylose isomerase-like TIM barrel JN439_RS10110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JN439_RS10110 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JN439_RS10115 PF03466 LysR substrate binding domain JN439_RS10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS10125 PF03279 Bacterial lipid A biosynthesis acyltransferase JN439_RS10130 PF03279 Bacterial lipid A biosynthesis acyltransferase JN439_RS10140 PF05726 Pirin C-terminal cupin domain JN439_RS10140 PF02678 Pirin JN439_RS10145 PF00136 DNA polymerase family B JN439_RS10145 PF03104 DNA polymerase family B, exonuclease domain JN439_RS10195 PF13737 Transposase DDE domain JN439_RS10225 PF08240 Alcohol dehydrogenase GroES-like domain JN439_RS10225 PF00107 Zinc-binding dehydrogenase JN439_RS10275 PF00043 Glutathione S-transferase, C-terminal domain JN439_RS10275 PF02798 Glutathione S-transferase, N-terminal domain JN439_RS10280 PF01625 Peptide methionine sulfoxide reductase JN439_RS10285 PF01641 SelR domain JN439_RS10290 PF03466 LysR substrate binding domain JN439_RS10290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS10300 PF01625 Peptide methionine sulfoxide reductase JN439_RS10330 PF01047 MarR family JN439_RS10335 PF03466 LysR substrate binding domain JN439_RS10335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS10345 PF03743 Bacterial conjugation TrbI-like protein JN439_RS10360 PF13700 Domain of unknown function (DUF4158) JN439_RS10360 PF01526 Tn3 transposase DDE domain JN439_RS10380 PF00809 Pterin binding enzyme JN439_RS10385 PF00893 Small Multidrug Resistance protein JN439_RS10390 PF13427 Domain of unknown function (DUF4111) JN439_RS10395 PF07690 Major Facilitator Superfamily JN439_RS10400 PF00186 Dihydrofolate reductase JN439_RS10440 PF02796 Helix-turn-helix domain of resolvase JN439_RS10440 PF00239 Resolvase, N terminal domain JN439_RS10460 PF13358 DDE superfamily endonuclease JN439_RS10485 PF02954 Bacterial regulatory protein, Fis family JN439_RS10485 PF00989 PAS fold JN439_RS10485 PF00158 Sigma-54 interaction domain JN439_RS10490 PF00465 Iron-containing alcohol dehydrogenase JN439_RS10495 PF03610 PTS system fructose IIA component JN439_RS10495 PF00381 PTS HPr component phosphorylation site JN439_RS10495 PF00391 PEP-utilising enzyme, mobile domain JN439_RS10495 PF05524 PEP-utilising enzyme, N-terminal JN439_RS10500 PF02734 DAK2 domain JN439_RS10505 PF02733 Dak1 domain JN439_RS10510 PF00860 Permease family JN439_RS10540 PF18766 SWI2/SNF2 ATPase JN439_RS10540 PF11867 Domain of unknown function (DUF3387) JN439_RS10540 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JN439_RS10545 PF13784 Fic/DOC family N-terminal JN439_RS10545 PF02661 Fic/DOC family JN439_RS10555 PF02384 N-6 DNA Methylase JN439_RS10565 PF01609 Transposase DDE domain JN439_RS10565 PF13808 DDE_Tnp_1-associated JN439_RS10610 PF01554 MatE JN439_RS10615 PF06786 Uncharacterised protein family (UPF0253) JN439_RS10620 PF00677 Lumazine binding domain JN439_RS10635 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS10640 PF02222 ATP-grasp domain JN439_RS10640 PF01370 NAD dependent epimerase/dehydratase family JN439_RS10645 PF00892 EamA-like transporter family JN439_RS10650 PF02525 Flavodoxin-like fold JN439_RS10680 PF07282 Putative transposase DNA-binding domain JN439_RS10680 PF01385 Probable transposase JN439_RS10680 PF12323 Helix-turn-helix domain JN439_RS10685 PF13509 S1 domain JN439_RS10685 PF17783 CvfB-like winged helix domain JN439_RS10695 PF04269 Protein of unknown function, DUF440 JN439_RS10700 PF00912 Transglycosylase JN439_RS10705 PF04269 Protein of unknown function, DUF440 JN439_RS10710 PF03776 Septum formation topological specificity factor MinE JN439_RS10715 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JN439_RS10720 PF05209 Septum formation inhibitor MinC, N-terminal domain JN439_RS10720 PF03775 Septum formation inhibitor MinC, C-terminal domain JN439_RS10725 PF05166 YcgL domain JN439_RS10730 PF13406 Transglycosylase SLT domain JN439_RS10735 PF03313 Serine dehydratase alpha chain JN439_RS10735 PF03315 Serine dehydratase beta chain JN439_RS10740 PF03313 Serine dehydratase alpha chain JN439_RS10740 PF03315 Serine dehydratase beta chain JN439_RS10745 PF06865 Pyrimidine/purine nucleoside phosphorylase JN439_RS10750 PF00375 Sodium:dicarboxylate symporter family JN439_RS10755 PF09278 MerR, DNA binding JN439_RS10755 PF00376 MerR family regulatory protein JN439_RS10760 PF00108 Thiolase, N-terminal domain JN439_RS10760 PF02803 Thiolase, C-terminal domain JN439_RS10765 PF08668 HDOD domain JN439_RS10765 PF00563 EAL domain JN439_RS10770 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JN439_RS10780 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JN439_RS10790 PF04542 Sigma-70 region 2 JN439_RS10790 PF08281 Sigma-70, region 4 JN439_RS10815 PF01882 Protein of unknown function DUF58 JN439_RS10820 PF17863 AAA lid domain JN439_RS10820 PF07726 ATPase family associated with various cellular activities (AAA) JN439_RS10825 PF02803 Thiolase, C-terminal domain JN439_RS10825 PF00108 Thiolase, N-terminal domain JN439_RS10830 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS10830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JN439_RS10830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JN439_RS10840 PF07152 YaeQ protein JN439_RS10850 PF07690 Major Facilitator Superfamily JN439_RS10855 PF00005 ABC transporter JN439_RS10860 PF01032 FecCD transport family JN439_RS10875 PF05433 Glycine zipper 2TM domain JN439_RS10890 PF07282 Putative transposase DNA-binding domain JN439_RS10890 PF01385 Probable transposase JN439_RS10890 PF12323 Helix-turn-helix domain JN439_RS10900 PF08279 HTH domain JN439_RS10900 PF13280 WYL domain JN439_RS10910 PF01502 Phosphoribosyl-AMP cyclohydrolase JN439_RS10910 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JN439_RS10915 PF00977 Histidine biosynthesis protein JN439_RS10920 PF01627 Hpt domain JN439_RS10920 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS10920 PF00072 Response regulator receiver domain JN439_RS10920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS10925 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS10925 PF08448 PAS fold JN439_RS10930 PF00072 Response regulator receiver domain JN439_RS10935 PF00977 Histidine biosynthesis protein JN439_RS10940 PF00117 Glutamine amidotransferase class-I JN439_RS10945 PF00475 Imidazoleglycerol-phosphate dehydratase JN439_RS10945 PF08645 Polynucleotide kinase 3 phosphatase JN439_RS10950 PF00155 Aminotransferase class I and II JN439_RS10955 PF00815 Histidinol dehydrogenase JN439_RS10960 PF08029 HisG, C-terminal domain JN439_RS10960 PF01634 ATP phosphoribosyltransferase JN439_RS10970 PF04851 Type III restriction enzyme, res subunit JN439_RS10970 PF13307 Helicase C-terminal domain JN439_RS10975 PF01609 Transposase DDE domain JN439_RS10980 PF00814 Glycoprotease family JN439_RS10990 PF00561 alpha/beta hydrolase fold JN439_RS10995 PF13193 AMP-binding enzyme C-terminal domain JN439_RS10995 PF00501 AMP-binding enzyme JN439_RS11000 PF01612 3'-5' exonuclease JN439_RS11000 PF00570 HRDC domain JN439_RS11010 PF00892 EamA-like transporter family JN439_RS11015 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JN439_RS11015 PF12833 Helix-turn-helix domain JN439_RS11015 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JN439_RS11015 PF02805 Metal binding domain of Ada JN439_RS11020 PF01207 Dihydrouridine synthase (Dus) JN439_RS11025 PF04304 Protein of unknown function (DUF454) JN439_RS11030 PF00156 Phosphoribosyl transferase domain JN439_RS11035 PF12170 DNA polymerase III tau subunit V interacting with alpha JN439_RS11035 PF12169 DNA polymerase III subunits gamma and tau domain III JN439_RS11035 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JN439_RS11040 PF02575 YbaB/EbfC DNA-binding family JN439_RS11045 PF03466 LysR substrate binding domain JN439_RS11045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS11050 PF05726 Pirin C-terminal cupin domain JN439_RS11050 PF02678 Pirin JN439_RS11055 PF07670 Nucleoside recognition JN439_RS11060 PF13495 Phage integrase, N-terminal SAM-like domain JN439_RS11060 PF00589 Phage integrase family JN439_RS11080 PF00893 Small Multidrug Resistance protein JN439_RS11085 PF00809 Pterin binding enzyme JN439_RS11095 PF13610 DDE domain JN439_RS11100 PF00196 Bacterial regulatory proteins, luxR family JN439_RS11100 PF00072 Response regulator receiver domain JN439_RS11105 PF01743 Poly A polymerase head domain JN439_RS11105 PF02272 DHHA1 domain JN439_RS11105 PF01368 DHH family JN439_RS11105 PF00571 CBS domain JN439_RS11110 PF04408 Helicase associated domain (HA2) JN439_RS11110 PF00271 Helicase conserved C-terminal domain JN439_RS11110 PF00270 DEAD/DEAH box helicase JN439_RS11110 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JN439_RS11110 PF11898 Domain of unknown function (DUF3418) JN439_RS11120 PF01386 Ribosomal L25p family JN439_RS11135 PF12323 Helix-turn-helix domain JN439_RS11135 PF07282 Putative transposase DNA-binding domain JN439_RS11135 PF01385 Probable transposase JN439_RS11150 PF00753 Metallo-beta-lactamase superfamily JN439_RS11160 PF00586 AIR synthase related protein, N-terminal domain JN439_RS11160 PF02769 AIR synthase related protein, C-terminal domain JN439_RS11175 PF17785 PUA-like domain JN439_RS11175 PF10672 S-adenosylmethionine-dependent methyltransferase JN439_RS11180 PF00672 HAMP domain JN439_RS11180 PF12729 Four helix bundle sensory module for signal transduction JN439_RS11180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS11185 PF00708 Acylphosphatase JN439_RS11195 PF09334 tRNA synthetases class I (M) JN439_RS11195 PF08264 Anticodon-binding domain of tRNA JN439_RS11195 PF01588 Putative tRNA binding domain JN439_RS11200 PF10609 NUBPL iron-transfer P-loop NTPase JN439_RS11205 PF00485 Phosphoribulokinase / Uridine kinase family JN439_RS11210 PF00692 dUTPase JN439_RS11215 PF01384 Phosphate transporter family JN439_RS11220 PF12111 Polyribonucleotide phosphorylase C terminal JN439_RS11220 PF10150 Ribonuclease E/G family JN439_RS11220 PF00575 S1 RNA binding domain JN439_RS11225 PF01479 S4 domain JN439_RS11225 PF00849 RNA pseudouridylate synthase JN439_RS11230 PF02545 Maf-like protein JN439_RS11240 PF02620 Large ribosomal RNA subunit accumulation protein YceD JN439_RS11245 PF01783 Ribosomal L32p protein family JN439_RS11250 PF02504 Fatty acid synthesis protein JN439_RS11255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JN439_RS11255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JN439_RS11260 PF00698 Acyl transferase domain JN439_RS11270 PF00550 Phosphopantetheine attachment site JN439_RS11275 PF00109 Beta-ketoacyl synthase, N-terminal domain JN439_RS11275 PF02801 Beta-ketoacyl synthase, C-terminal domain JN439_RS11280 PF01063 Amino-transferase class IV JN439_RS11285 PF02618 YceG-like family JN439_RS11290 PF02223 Thymidylate kinase JN439_RS11295 PF09115 DNA polymerase III, delta subunit, C terminal JN439_RS11300 PF01026 TatD related DNase JN439_RS11305 PF00589 Phage integrase family JN439_RS11315 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JN439_RS11315 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JN439_RS11315 PF01189 16S rRNA methyltransferase RsmB/F JN439_RS11320 PF02470 MlaD protein JN439_RS11325 PF04403 Paraquat-inducible protein A JN439_RS11335 PF07130 YebG protein JN439_RS11360 PF05598 Transposase domain (DUF772) JN439_RS11360 PF01609 Transposase DDE domain JN439_RS11410 PF09722 Protein of unknown function (DUF2384) JN439_RS11420 PF00872 Transposase, Mutator family JN439_RS11425 PF01609 Transposase DDE domain JN439_RS11460 PF01609 Transposase DDE domain JN439_RS11460 PF05598 Transposase domain (DUF772) JN439_RS11470 PF01381 Helix-turn-helix JN439_RS11480 PF13654 AAA domain JN439_RS11480 PF05362 Lon protease (S16) C-terminal proteolytic domain JN439_RS11485 PF07977 FabA-like domain JN439_RS11490 PF04957 Ribosome modulation factor JN439_RS11500 PF12848 ABC transporter JN439_RS11500 PF00005 ABC transporter JN439_RS11500 PF16326 ABC transporter C-terminal domain JN439_RS11510 PF10672 S-adenosylmethionine-dependent methyltransferase JN439_RS11510 PF02926 THUMP domain JN439_RS11510 PF01170 Putative RNA methylase family UPF0020 JN439_RS11515 PF07126 Cell-division protein ZapC JN439_RS11520 PF01180 Dihydroorotate dehydrogenase JN439_RS11525 PF05088 Bacterial NAD-glutamate dehydrogenase JN439_RS11535 PF01433 Peptidase family M1 domain JN439_RS11535 PF11940 Domain of unknown function (DUF3458) Ig-like fold JN439_RS11535 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JN439_RS11540 PF17804 Tail specific protease N-terminal domain JN439_RS11540 PF00595 PDZ domain JN439_RS11540 PF11818 C-terminal domain of tail specific protease (DUF3340) JN439_RS11540 PF03572 Peptidase family S41 JN439_RS11545 PF04352 ProQ/FINO family JN439_RS11545 PF17516 ProQ C-terminal domain JN439_RS11550 PF13185 GAF domain JN439_RS11565 PF00115 Cytochrome C and Quinol oxidase polypeptide I JN439_RS11580 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JN439_RS11580 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JN439_RS11590 PF00403 Heavy-metal-associated domain JN439_RS11605 PF00027 Cyclic nucleotide-binding domain JN439_RS11605 PF13545 Crp-like helix-turn-helix domain JN439_RS11610 PF00582 Universal stress protein family JN439_RS11615 PF01171 PP-loop family JN439_RS11630 PF02798 Glutathione S-transferase, N-terminal domain JN439_RS11630 PF00043 Glutathione S-transferase, C-terminal domain JN439_RS11635 PF05025 RbsD / FucU transport protein family JN439_RS11640 PF00005 ABC transporter JN439_RS11645 PF02653 Branched-chain amino acid transport system / permease component JN439_RS11650 PF13407 Periplasmic binding protein domain JN439_RS11655 PF00294 pfkB family carbohydrate kinase JN439_RS11660 PF00356 Bacterial regulatory proteins, lacI family JN439_RS11675 PF02146 Sir2 family JN439_RS11690 PF00072 Response regulator receiver domain JN439_RS11690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS11690 PF09456 RcsC Alpha-Beta-Loop (ABL) JN439_RS11690 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS11695 PF00216 Bacterial DNA-binding protein JN439_RS11700 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JN439_RS11700 PF01588 Putative tRNA binding domain JN439_RS11700 PF03483 B3/4 domain JN439_RS11700 PF03484 tRNA synthetase B5 domain JN439_RS11700 PF03147 Ferredoxin-fold anticodon binding domain JN439_RS11705 PF01409 tRNA synthetases class II core domain (F) JN439_RS11705 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JN439_RS11710 PF00453 Ribosomal protein L20 JN439_RS11715 PF01632 Ribosomal protein L35 JN439_RS11720 PF00707 Translation initiation factor IF-3, C-terminal domain JN439_RS11720 PF05198 Translation initiation factor IF-3, N-terminal domain JN439_RS11725 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JN439_RS11725 PF03129 Anticodon binding domain JN439_RS11725 PF02824 TGS domain JN439_RS11725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JN439_RS11765 PF01385 Probable transposase JN439_RS11765 PF12323 Helix-turn-helix domain JN439_RS11765 PF07282 Putative transposase DNA-binding domain JN439_RS11785 PF00521 DNA gyrase/topoisomerase IV, subunit A JN439_RS11785 PF03989 DNA gyrase C-terminal domain, beta-propeller JN439_RS11795 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS11800 PF00317 Ribonucleotide reductase, all-alpha domain JN439_RS11800 PF02867 Ribonucleotide reductase, barrel domain JN439_RS11800 PF03477 ATP cone domain JN439_RS11805 PF00268 Ribonucleotide reductase, small chain JN439_RS11810 PF00111 2Fe-2S iron-sulfur cluster binding domain JN439_RS11815 PF03562 MltA specific insert domain JN439_RS11815 PF06725 3D domain JN439_RS11820 PF06945 Protein of unknown function (DUF1289) JN439_RS11825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JN439_RS11825 PF02378 Phosphotransferase system, EIIC JN439_RS11830 PF00294 pfkB family carbohydrate kinase JN439_RS11835 PF00381 PTS HPr component phosphorylation site JN439_RS11835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JN439_RS11840 PF00356 Bacterial regulatory proteins, lacI family JN439_RS11840 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JN439_RS11845 PF03222 Tryptophan/tyrosine permease family JN439_RS11860 PF00270 DEAD/DEAH box helicase JN439_RS11860 PF00271 Helicase conserved C-terminal domain JN439_RS11870 PF01264 Chorismate synthase JN439_RS11875 PF05175 Methyltransferase small domain JN439_RS11880 PF01713 Smr domain JN439_RS11905 PF00704 Glycosyl hydrolases family 18 JN439_RS11905 PF08329 Chitinase A, N-terminal domain JN439_RS11915 PF03831 PhnA domain JN439_RS11915 PF08274 PhnA Zinc-Ribbon JN439_RS11940 PF12323 Helix-turn-helix domain JN439_RS11940 PF01385 Probable transposase JN439_RS11940 PF07282 Putative transposase DNA-binding domain JN439_RS11950 PF00300 Histidine phosphatase superfamily (branch 1) JN439_RS11970 PF05036 Sporulation related domain JN439_RS11970 PF03330 Lytic transglycolase JN439_RS11975 PF04310 MukB N-terminal JN439_RS11975 PF16330 MukB hinge domain JN439_RS11980 PF04288 MukE-like family JN439_RS11985 PF03882 MukF winged-helix domain JN439_RS11985 PF17193 MukF C-terminal domain JN439_RS11985 PF17192 MukF middle domain JN439_RS11990 PF13847 Methyltransferase domain JN439_RS11995 PF02698 DUF218 domain JN439_RS12000 PF00121 Triosephosphate isomerase JN439_RS12005 PF00365 Phosphofructokinase JN439_RS12010 PF01546 Peptidase family M20/M25/M40 JN439_RS12010 PF07687 Peptidase dimerisation domain JN439_RS12015 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS12020 PF02789 Cytosol aminopeptidase family, N-terminal domain JN439_RS12020 PF00883 Cytosol aminopeptidase family, catalytic domain JN439_RS12060 PF11398 Protein of unknown function (DUF2813) JN439_RS12075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS12075 PF03466 LysR substrate binding domain JN439_RS12080 PF01925 Sulfite exporter TauE/SafE JN439_RS12090 PF03942 DTW domain JN439_RS12095 PF01820 D-ala D-ala ligase N-terminus JN439_RS12095 PF07478 D-ala D-ala ligase C-terminus JN439_RS12105 PF00255 Glutathione peroxidase JN439_RS12110 PF00270 DEAD/DEAH box helicase JN439_RS12110 PF00271 Helicase conserved C-terminal domain JN439_RS12115 PF13673 Acetyltransferase (GNAT) domain JN439_RS12125 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JN439_RS12135 PF01928 CYTH domain JN439_RS12145 PF13673 Acetyltransferase (GNAT) domain JN439_RS12150 PF03992 Antibiotic biosynthesis monooxygenase JN439_RS12155 PF08543 Phosphomethylpyrimidine kinase JN439_RS12175 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JN439_RS12175 PF00561 alpha/beta hydrolase fold JN439_RS12180 PF01575 MaoC like domain JN439_RS12200 PF00664 ABC transporter transmembrane region JN439_RS12200 PF00005 ABC transporter JN439_RS12205 PF00664 ABC transporter transmembrane region JN439_RS12205 PF00005 ABC transporter JN439_RS12210 PF00072 Response regulator receiver domain JN439_RS12210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN439_RS12210 PF00672 HAMP domain JN439_RS12210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS12210 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS12210 PF01627 Hpt domain JN439_RS12220 PF00085 Thioredoxin JN439_RS12225 PF00939 Sodium:sulfate symporter transmembrane region JN439_RS12235 PF00343 Carbohydrate phosphorylase JN439_RS12260 PF04715 Anthranilate synthase component I, N terminal region JN439_RS12260 PF00425 chorismate binding enzyme JN439_RS12265 PF00293 NUDIX domain JN439_RS12270 PF03222 Tryptophan/tyrosine permease family JN439_RS12275 PF00375 Sodium:dicarboxylate symporter family JN439_RS12280 PF00271 Helicase conserved C-terminal domain JN439_RS12280 PF00570 HRDC domain JN439_RS12280 PF09382 RQC domain JN439_RS12280 PF00270 DEAD/DEAH box helicase JN439_RS12280 PF16124 RecQ zinc-binding JN439_RS12285 PF08298 PrkA AAA domain JN439_RS12285 PF06798 PrkA serine protein kinase C-terminal domain JN439_RS12290 PF04285 Protein of unknown function (DUF444) JN439_RS12295 PF04293 SpoVR like protein JN439_RS12300 PF07840 FadR C-terminal domain JN439_RS12300 PF00392 Bacterial regulatory proteins, gntR family JN439_RS12305 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JN439_RS12310 PF02600 Disulfide bond formation protein DsbB JN439_RS12315 PF09335 SNARE associated Golgi protein JN439_RS12325 PF00271 Helicase conserved C-terminal domain JN439_RS12325 PF17757 UvrB interaction domain JN439_RS12325 PF02151 UvrB/uvrC motif JN439_RS12325 PF12344 Ultra-violet resistance protein B JN439_RS12325 PF04851 Type III restriction enzyme, res subunit JN439_RS12335 PF06826 Predicted Permease Membrane Region JN439_RS12335 PF02080 TrkA-C domain JN439_RS12345 PF01385 Probable transposase JN439_RS12345 PF12323 Helix-turn-helix domain JN439_RS12345 PF07282 Putative transposase DNA-binding domain JN439_RS12365 PF01970 Tripartite tricarboxylate transporter TctA family JN439_RS12370 PF00072 Response regulator receiver domain JN439_RS12375 PF17203 Single cache domain 3 JN439_RS12375 PF00989 PAS fold JN439_RS12375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS12375 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JN439_RS12380 PF01047 MarR family JN439_RS12380 PF00480 ROK family JN439_RS12390 PF02810 SEC-C motif JN439_RS12395 PF04324 BFD-like [2Fe-2S] binding domain JN439_RS12395 PF01266 FAD dependent oxidoreductase JN439_RS12400 PF00890 FAD binding domain JN439_RS12405 PF13183 4Fe-4S dicluster domain JN439_RS12405 PF02754 Cysteine-rich domain JN439_RS12410 PF02335 Cytochrome c552 JN439_RS12415 PF13435 Cytochrome c554 and c-prime JN439_RS12415 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JN439_RS12420 PF00037 4Fe-4S binding domain JN439_RS12420 PF13247 4Fe-4S dicluster domain JN439_RS12425 PF03916 Polysulphide reductase, NrfD JN439_RS12430 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JN439_RS12430 PF01578 Cytochrome C assembly protein JN439_RS12435 PF08534 Redoxin JN439_RS12440 PF03918 Cytochrome C biogenesis protein JN439_RS12445 PF00768 D-alanyl-D-alanine carboxypeptidase JN439_RS12455 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JN439_RS12460 PF01266 FAD dependent oxidoreductase JN439_RS12470 PF07969 Amidohydrolase family JN439_RS12475 PF00571 CBS domain JN439_RS12475 PF01743 Poly A polymerase head domain JN439_RS12485 PF01717 Cobalamin-independent synthase, Catalytic domain JN439_RS12485 PF08267 Cobalamin-independent synthase, N-terminal domain JN439_RS12490 PF03466 LysR substrate binding domain JN439_RS12490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS12500 PF00593 TonB dependent receptor JN439_RS12500 PF07715 TonB-dependent Receptor Plug Domain JN439_RS12505 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS12510 PF00563 EAL domain JN439_RS12510 PF12792 CSS motif domain associated with EAL JN439_RS12515 PF12833 Helix-turn-helix domain JN439_RS12515 PF02311 AraC-like ligand binding domain JN439_RS12520 PF03466 LysR substrate binding domain JN439_RS12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS12525 PF13460 NAD(P)H-binding JN439_RS12535 PF01053 Cys/Met metabolism PLP-dependent enzyme JN439_RS12540 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JN439_RS12540 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JN439_RS12580 PF02646 RmuC family JN439_RS12590 PF01610 Transposase JN439_RS12590 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS12590 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS12625 PF02492 CobW/HypB/UreG, nucleotide-binding domain JN439_RS12630 PF01730 UreF JN439_RS12640 PF05194 UreE urease accessory protein, C-terminal domain JN439_RS12640 PF02814 UreE urease accessory protein, N-terminal domain JN439_RS12645 PF00449 Urease alpha-subunit, N-terminal domain JN439_RS12645 PF01979 Amidohydrolase family JN439_RS12650 PF00699 Urease beta subunit JN439_RS12655 PF00547 Urease, gamma subunit JN439_RS12660 PF01774 UreD urease accessory protein JN439_RS12665 PF00005 ABC transporter JN439_RS12670 PF12399 Branched-chain amino acid ATP-binding cassette transporter JN439_RS12670 PF00005 ABC transporter JN439_RS12680 PF02653 Branched-chain amino acid transport system / permease component JN439_RS12685 PF00158 Sigma-54 interaction domain JN439_RS12685 PF02954 Bacterial regulatory protein, Fis family JN439_RS12685 PF13188 PAS domain JN439_RS12700 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS12700 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS12700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS12700 PF00072 Response regulator receiver domain JN439_RS12705 PF00072 Response regulator receiver domain JN439_RS12705 PF00486 Transcriptional regulatory protein, C terminal JN439_RS12725 PF01609 Transposase DDE domain JN439_RS12725 PF05598 Transposase domain (DUF772) JN439_RS12745 PF07282 Putative transposase DNA-binding domain JN439_RS12745 PF12323 Helix-turn-helix domain JN439_RS12745 PF01385 Probable transposase JN439_RS12750 PF12323 Helix-turn-helix domain JN439_RS12820 PF13657 HipA N-terminal domain JN439_RS12820 PF07804 HipA-like C-terminal domain JN439_RS12845 PF01609 Transposase DDE domain JN439_RS12845 PF05598 Transposase domain (DUF772) JN439_RS12895 PF10722 Putative bacterial sensory transduction regulator JN439_RS12905 PF00265 Thymidine kinase JN439_RS12910 PF03553 Na+/H+ antiporter family JN439_RS12915 PF00816 H-NS histone family JN439_RS12920 PF01923 Cobalamin adenosyltransferase JN439_RS12925 PF12843 Putative quorum-sensing-regulated virulence factor JN439_RS12930 PF04055 Radical SAM superfamily JN439_RS12935 PF06508 Queuosine biosynthesis protein QueC JN439_RS12950 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JN439_RS12955 PF18073 Rubredoxin metal binding domain JN439_RS12965 PF00216 Bacterial DNA-binding protein JN439_RS12970 PF00575 S1 RNA binding domain JN439_RS12975 PF02224 Cytidylate kinase JN439_RS12980 PF00925 GTP cyclohydrolase II JN439_RS12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS12985 PF03466 LysR substrate binding domain JN439_RS13005 PF00881 Nitroreductase family JN439_RS13010 PF03806 AbgT putative transporter family JN439_RS13015 PF13188 PAS domain JN439_RS13015 PF03707 Bacterial signalling protein N terminal repeat JN439_RS13015 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS13015 PF00563 EAL domain JN439_RS13030 PF00072 Response regulator receiver domain JN439_RS13030 PF00486 Transcriptional regulatory protein, C terminal JN439_RS13040 PF01212 Beta-eliminating lyase JN439_RS13055 PF00248 Aldo/keto reductase family JN439_RS13060 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JN439_RS13070 PF03411 Penicillin-insensitive murein endopeptidase JN439_RS13080 PF04536 TPM domain JN439_RS13100 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS13105 PF00691 OmpA family JN439_RS13105 PF13677 Membrane MotB of proton-channel complex MotA/MotB JN439_RS13110 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JN439_RS13115 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JN439_RS13120 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JN439_RS13120 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JN439_RS13130 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JN439_RS13130 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JN439_RS13135 PF00384 Molybdopterin oxidoreductase JN439_RS13135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JN439_RS13135 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JN439_RS13140 PF00146 NADH dehydrogenase JN439_RS13145 PF12838 4Fe-4S dicluster domain JN439_RS13150 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JN439_RS13155 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JN439_RS13160 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JN439_RS13160 PF00361 Proton-conducting membrane transporter JN439_RS13165 PF00361 Proton-conducting membrane transporter JN439_RS13170 PF00361 Proton-conducting membrane transporter JN439_RS13175 PF02769 AIR synthase related protein, C-terminal domain JN439_RS13175 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JN439_RS13175 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JN439_RS13180 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS13180 PF01464 Transglycosylase SLT domain JN439_RS13190 PF07191 zinc-ribbons JN439_RS13195 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JN439_RS13195 PF01926 50S ribosome-binding GTPase JN439_RS13200 PF13360 PQQ-like domain JN439_RS13205 PF09976 Tetratricopeptide repeat-like domain JN439_RS13210 PF13393 Histidyl-tRNA synthetase JN439_RS13210 PF03129 Anticodon binding domain JN439_RS13215 PF04551 GcpE protein JN439_RS13220 PF13464 Domain of unknown function (DUF4115) JN439_RS13230 PF04055 Radical SAM superfamily JN439_RS13235 PF00334 Nucleoside diphosphate kinase JN439_RS13240 PF12404 Peptidase JN439_RS13240 PF00883 Cytosol aminopeptidase family, catalytic domain JN439_RS13245 PF12404 Peptidase JN439_RS13245 PF00883 Cytosol aminopeptidase family, catalytic domain JN439_RS13250 PF00111 2Fe-2S iron-sulfur cluster binding domain JN439_RS13255 PF00012 Hsp70 protein JN439_RS13260 PF00226 DnaJ domain JN439_RS13260 PF07743 HSCB C-terminal oligomerisation domain JN439_RS13265 PF01521 Iron-sulphur cluster biosynthesis JN439_RS13270 PF01592 NifU-like N terminal domain JN439_RS13275 PF00266 Aminotransferase class-V JN439_RS13280 PF02082 Transcriptional regulator JN439_RS13285 PF00588 SpoU rRNA Methylase family JN439_RS13290 PF02036 SCP-2 sterol transfer family JN439_RS13295 PF01136 Peptidase family U32 JN439_RS13300 PF01136 Peptidase family U32 JN439_RS13305 PF13181 Tetratricopeptide repeat JN439_RS13305 PF07719 Tetratricopeptide repeat JN439_RS13315 PF02355 Protein export membrane protein JN439_RS13315 PF07549 SecD/SecF GG Motif JN439_RS13320 PF02355 Protein export membrane protein JN439_RS13320 PF07549 SecD/SecF GG Motif JN439_RS13320 PF13721 SecD export protein N-terminal TM region JN439_RS13325 PF02699 Preprotein translocase subunit JN439_RS13330 PF01702 Queuine tRNA-ribosyltransferase JN439_RS13335 PF02547 Queuosine biosynthesis protein JN439_RS13340 PF00571 CBS domain JN439_RS13345 PF10417 C-terminal domain of 1-Cys peroxiredoxin JN439_RS13345 PF00578 AhpC/TSA family JN439_RS13350 PF13192 Thioredoxin domain JN439_RS13350 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS13355 PF07690 Major Facilitator Superfamily JN439_RS13365 PF08241 Methyltransferase domain JN439_RS13390 PF09722 Protein of unknown function (DUF2384) JN439_RS13410 PF01609 Transposase DDE domain JN439_RS13420 PF00665 Integrase core domain JN439_RS13435 PF11867 Domain of unknown function (DUF3387) JN439_RS13435 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JN439_RS13435 PF18766 SWI2/SNF2 ATPase JN439_RS13440 PF02463 RecF/RecN/SMC N terminal domain JN439_RS13450 PF02384 N-6 DNA Methylase JN439_RS13450 PF12161 HsdM N-terminal domain JN439_RS13460 PF02347 Glycine cleavage system P-protein JN439_RS13465 PF01597 Glycine cleavage H-protein JN439_RS13470 PF08669 Glycine cleavage T-protein C-terminal barrel domain JN439_RS13470 PF01571 Aminomethyltransferase folate-binding domain JN439_RS13475 PF01494 FAD binding domain JN439_RS13480 PF01494 FAD binding domain JN439_RS13485 PF03695 Uncharacterised protein family (UPF0149) JN439_RS13490 PF05164 Cell division protein ZapA JN439_RS13500 PF07690 Major Facilitator Superfamily JN439_RS13505 PF00005 ABC transporter JN439_RS13510 PF12911 N-terminal TM domain of oligopeptide transport permease C JN439_RS13510 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS13515 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS13525 PF00043 Glutathione S-transferase, C-terminal domain JN439_RS13525 PF02798 Glutathione S-transferase, N-terminal domain JN439_RS13530 PF00043 Glutathione S-transferase, C-terminal domain JN439_RS13530 PF02798 Glutathione S-transferase, N-terminal domain JN439_RS13540 PF00459 Inositol monophosphatase family JN439_RS13545 PF00691 OmpA family JN439_RS13545 PF18393 MotY N-terminal domain JN439_RS13550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS13550 PF00672 HAMP domain JN439_RS13550 PF12729 Four helix bundle sensory module for signal transduction JN439_RS13555 PF00929 Exonuclease JN439_RS13560 PF13726 Na+-H+ antiporter family JN439_RS13560 PF03553 Na+/H+ antiporter family JN439_RS13565 PF07690 Major Facilitator Superfamily JN439_RS13570 PF03466 LysR substrate binding domain JN439_RS13570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS13575 PF08448 PAS fold JN439_RS13575 PF08447 PAS fold JN439_RS13575 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS13575 PF00563 EAL domain JN439_RS13585 PF03880 DbpA RNA binding domain JN439_RS13585 PF00270 DEAD/DEAH box helicase JN439_RS13585 PF00271 Helicase conserved C-terminal domain JN439_RS13590 PF03061 Thioesterase superfamily JN439_RS13600 PF01565 FAD binding domain JN439_RS13600 PF13183 4Fe-4S dicluster domain JN439_RS13600 PF02913 FAD linked oxidases, C-terminal domain JN439_RS13615 PF01609 Transposase DDE domain JN439_RS13615 PF05598 Transposase domain (DUF772) JN439_RS13620 PF03741 Integral membrane protein TerC family JN439_RS13620 PF03471 Transporter associated domain JN439_RS13625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN439_RS13630 PF00107 Zinc-binding dehydrogenase JN439_RS13630 PF08240 Alcohol dehydrogenase GroES-like domain JN439_RS13635 PF00962 Adenosine/AMP deaminase JN439_RS13640 PF13344 Haloacid dehalogenase-like hydrolase JN439_RS13650 PF00733 Asparagine synthase JN439_RS13650 PF13537 Glutamine amidotransferase domain JN439_RS13665 PF14497 Glutathione S-transferase, C-terminal domain JN439_RS13665 PF02798 Glutathione S-transferase, N-terminal domain JN439_RS13675 PF04209 homogentisate 1,2-dioxygenase JN439_RS13680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN439_RS13690 PF00849 RNA pseudouridylate synthase JN439_RS13695 PF00563 EAL domain JN439_RS13695 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS13695 PF13426 PAS domain JN439_RS13710 PF00285 Citrate synthase, C-terminal domain JN439_RS13715 PF00330 Aconitase family (aconitate hydratase) JN439_RS13715 PF00694 Aconitase C-terminal domain JN439_RS13720 PF04303 PrpF protein JN439_RS13730 PF07715 TonB-dependent Receptor Plug Domain JN439_RS13730 PF07660 Secretin and TonB N terminus short domain JN439_RS13730 PF00593 TonB dependent receptor JN439_RS13740 PF01027 Inhibitor of apoptosis-promoting Bax1 JN439_RS13745 PF12805 FUSC-like inner membrane protein yccS JN439_RS13750 PF04358 DsrC like protein JN439_RS13755 PF05036 Sporulation related domain JN439_RS13760 PF08245 Mur ligase middle domain JN439_RS13760 PF02875 Mur ligase family, glutamate ligase domain JN439_RS13765 PF17848 Acetyl-coA carboxylase zinc finger domain JN439_RS13765 PF01039 Carboxyl transferase domain JN439_RS13770 PF01416 tRNA pseudouridine synthase JN439_RS13780 PF02774 Semialdehyde dehydrogenase, dimerisation domain JN439_RS13780 PF01118 Semialdehyde dehydrogenase, NAD binding domain JN439_RS13785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN439_RS13785 PF11890 Domain of unknown function (DUF3410) JN439_RS13785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN439_RS13795 PF03180 NLPA lipoprotein JN439_RS13820 PF00005 ABC transporter JN439_RS13825 PF02896 PEP-utilising enzyme, TIM barrel domain JN439_RS13825 PF00391 PEP-utilising enzyme, mobile domain JN439_RS13825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JN439_RS13830 PF03618 Kinase/pyrophosphorylase JN439_RS13840 PF00324 Amino acid permease JN439_RS13870 PF13358 DDE superfamily endonuclease JN439_RS13870 PF13592 Winged helix-turn helix JN439_RS13885 PF13808 DDE_Tnp_1-associated JN439_RS13885 PF01609 Transposase DDE domain JN439_RS13900 PF00664 ABC transporter transmembrane region JN439_RS13900 PF00005 ABC transporter JN439_RS13900 PF03412 Peptidase C39 family JN439_RS13910 PF04055 Radical SAM superfamily JN439_RS13910 PF16199 Radical_SAM C-terminal domain JN439_RS13915 PF00310 Glutamine amidotransferases class-II JN439_RS13915 PF04898 Glutamate synthase central domain JN439_RS13915 PF01493 GXGXG motif JN439_RS13915 PF01645 Conserved region in glutamate synthase JN439_RS13920 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS13920 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JN439_RS13925 PF00005 ABC transporter JN439_RS13930 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS13935 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS13960 PF14521 Lysine-specific metallo-endopeptidase JN439_RS13970 PF00271 Helicase conserved C-terminal domain JN439_RS13970 PF00270 DEAD/DEAH box helicase JN439_RS13995 PF05598 Transposase domain (DUF772) JN439_RS13995 PF01609 Transposase DDE domain JN439_RS14005 PF07759 Protein of unknown function (DUF1615) JN439_RS14010 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS14015 PF00682 HMGL-like JN439_RS14015 PF08502 LeuA allosteric (dimerisation) domain JN439_RS14020 PF01610 Transposase JN439_RS14020 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS14020 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS14025 PF02142 MGS-like domain JN439_RS14025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JN439_RS14025 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JN439_RS14030 PF00117 Glutamine amidotransferase class-I JN439_RS14030 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JN439_RS14035 PF01113 Dihydrodipicolinate reductase, N-terminus JN439_RS14035 PF05173 Dihydrodipicolinate reductase, C-terminus JN439_RS14045 PF01812 5-formyltetrahydrofolate cyclo-ligase family JN439_RS14050 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JN439_RS14055 PF01842 ACT domain JN439_RS14055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN439_RS14055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN439_RS14060 PF01219 Prokaryotic diacylglycerol kinase JN439_RS14065 PF00793 DAHP synthetase I family JN439_RS14070 PF00005 ABC transporter JN439_RS14075 PF01032 FecCD transport family JN439_RS14090 PF00437 Type II/IV secretion system protein JN439_RS14100 PF17910 FeoB cytosolic helical domain JN439_RS14100 PF02421 Ferrous iron transport protein B JN439_RS14100 PF07664 Ferrous iron transport protein B C terminus JN439_RS14100 PF07670 Nucleoside recognition JN439_RS14110 PF01253 Translation initiation factor SUI1 JN439_RS14115 PF01169 Uncharacterized protein family UPF0016 JN439_RS14150 PF13185 GAF domain JN439_RS14150 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS14155 PF05598 Transposase domain (DUF772) JN439_RS14155 PF01609 Transposase DDE domain JN439_RS14170 PF09190 DALR domain JN439_RS14170 PF01406 tRNA synthetases class I (C) catalytic domain JN439_RS14175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JN439_RS14185 PF00149 Calcineurin-like phosphoesterase JN439_RS14190 PF04226 Transglycosylase associated protein JN439_RS14195 PF16925 Tetracyclin repressor-like, C-terminal domain JN439_RS14195 PF00440 Bacterial regulatory proteins, tetR family JN439_RS14200 PF08240 Alcohol dehydrogenase GroES-like domain JN439_RS14200 PF00107 Zinc-binding dehydrogenase JN439_RS14210 PF01979 Amidohydrolase family JN439_RS14215 PF03466 LysR substrate binding domain JN439_RS14215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS14235 PF01066 CDP-alcohol phosphatidyltransferase JN439_RS14240 PF01541 GIY-YIG catalytic domain JN439_RS14240 PF02151 UvrB/uvrC motif JN439_RS14240 PF08459 UvrC Helix-hairpin-helix N-terminal JN439_RS14245 PF00072 Response regulator receiver domain JN439_RS14245 PF00196 Bacterial regulatory proteins, luxR family JN439_RS14250 PF02348 Cytidylyltransferase JN439_RS14255 PF03966 Trm112p-like protein JN439_RS14260 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JN439_RS14265 PF00664 ABC transporter transmembrane region JN439_RS14265 PF00005 ABC transporter JN439_RS14285 PF05872 Bacterial protein of unknown function (DUF853) JN439_RS14290 PF00155 Aminotransferase class I and II JN439_RS14300 PF13609 Gram-negative porin JN439_RS14305 PF06733 DEAD_2 JN439_RS14305 PF13307 Helicase C-terminal domain JN439_RS14315 PF00850 Histone deacetylase domain JN439_RS14320 PF07690 Major Facilitator Superfamily JN439_RS14325 PF01926 50S ribosome-binding GTPase JN439_RS14330 PF00245 Alkaline phosphatase JN439_RS14335 PF00245 Alkaline phosphatase JN439_RS14350 PF14760 Rnk N-terminus JN439_RS14350 PF01272 Transcription elongation factor, GreA/GreB, C-term JN439_RS14360 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS14365 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS14370 PF00005 ABC transporter JN439_RS14380 PF13520 Amino acid permease JN439_RS14385 PF02310 B12 binding domain JN439_RS14385 PF02607 B12 binding domain JN439_RS14385 PF02965 Vitamin B12 dependent methionine synthase, activation domain JN439_RS14385 PF00809 Pterin binding enzyme JN439_RS14385 PF02574 Homocysteine S-methyltransferase JN439_RS14395 PF00571 CBS domain JN439_RS14395 PF03471 Transporter associated domain JN439_RS14395 PF01595 Cyclin M transmembrane N-terminal domain JN439_RS14400 PF01895 PhoU domain JN439_RS14405 PF00005 ABC transporter JN439_RS14410 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS14415 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS14420 PF14437 MafB19-like deaminase JN439_RS14435 PF01274 Malate synthase JN439_RS14440 PF00463 Isocitrate lyase family JN439_RS14445 PF07282 Putative transposase DNA-binding domain JN439_RS14445 PF01385 Probable transposase JN439_RS14445 PF12323 Helix-turn-helix domain JN439_RS14455 PF00308 Bacterial dnaA protein JN439_RS14470 PF02769 AIR synthase related protein, C-terminal domain JN439_RS14470 PF00586 AIR synthase related protein, N-terminal domain JN439_RS14475 PF00551 Formyl transferase JN439_RS14480 PF01784 NIF3 (NGG1p interacting factor 3) JN439_RS14485 PF00158 Sigma-54 interaction domain JN439_RS14485 PF00072 Response regulator receiver domain JN439_RS14485 PF02954 Bacterial regulatory protein, Fis family JN439_RS14490 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS14490 PF13188 PAS domain JN439_RS14490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS14495 PF06490 Flagellar regulatory protein FleQ JN439_RS14495 PF02954 Bacterial regulatory protein, Fis family JN439_RS14495 PF00158 Sigma-54 interaction domain JN439_RS14505 PF01842 ACT domain JN439_RS14510 PF17941 Polyphosphate kinase C-terminal domain 1 JN439_RS14510 PF02503 Polyphosphate kinase middle domain JN439_RS14510 PF13089 Polyphosphate kinase N-terminal domain JN439_RS14510 PF13090 Polyphosphate kinase C-terminal domain 2 JN439_RS14515 PF02541 Ppx/GppA phosphatase family JN439_RS14520 PF00571 CBS domain JN439_RS14520 PF01769 Divalent cation transporter JN439_RS14520 PF03448 MgtE intracellular N domain JN439_RS14530 PF07196 Flagellin hook IN motif JN439_RS14530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN439_RS14535 PF10135 Rod binding protein JN439_RS14535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JN439_RS14540 PF02119 Flagellar P-ring protein JN439_RS14545 PF02107 Flagellar L-ring protein JN439_RS14550 PF00460 Flagella basal body rod protein JN439_RS14550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN439_RS14555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN439_RS14555 PF00460 Flagella basal body rod protein JN439_RS14560 PF07559 Flagellar basal body protein FlaE JN439_RS14560 PF00460 Flagella basal body rod protein JN439_RS14560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN439_RS14570 PF00460 Flagella basal body rod protein JN439_RS14570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN439_RS14575 PF00460 Flagella basal body rod protein JN439_RS14580 PF03705 CheR methyltransferase, all-alpha domain JN439_RS14580 PF01739 CheR methyltransferase, SAM binding domain JN439_RS14585 PF00072 Response regulator receiver domain JN439_RS14585 PF01584 CheW-like domain JN439_RS14590 PF13144 Chaperone for flagella basal body P-ring formation JN439_RS14605 PF12850 Calcineurin-like phosphoesterase superfamily domain JN439_RS14610 PF01385 Probable transposase JN439_RS14610 PF07282 Putative transposase DNA-binding domain JN439_RS14610 PF12323 Helix-turn-helix domain JN439_RS14620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS14630 PF01479 S4 domain JN439_RS14630 PF00849 RNA pseudouridylate synthase JN439_RS14635 PF12323 Helix-turn-helix domain JN439_RS14635 PF01385 Probable transposase JN439_RS14635 PF07282 Putative transposase DNA-binding domain JN439_RS14645 PF00892 EamA-like transporter family JN439_RS14650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS14655 PF02371 Transposase IS116/IS110/IS902 family JN439_RS14655 PF01548 Transposase JN439_RS14680 PF00313 'Cold-shock' DNA-binding domain JN439_RS14685 PF00364 Biotin-requiring enzyme JN439_RS14685 PF02817 e3 binding domain JN439_RS14685 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JN439_RS14690 PF02780 Transketolase, C-terminal domain JN439_RS14690 PF02779 Transketolase, pyrimidine binding domain JN439_RS14695 PF00676 Dehydrogenase E1 component JN439_RS14700 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JN439_RS14710 PF05472 DNA replication terminus site-binding protein (Ter protein) JN439_RS14715 PF00176 SNF2 family N-terminal domain JN439_RS14715 PF04434 SWIM zinc finger JN439_RS14715 PF00271 Helicase conserved C-terminal domain JN439_RS14720 PF04337 Protein of unknown function, DUF480 JN439_RS14730 PF06082 Exopolysaccharide biosynthesis protein YbjH JN439_RS14735 PF06251 Capsule biosynthesis GfcC JN439_RS14750 PF13614 AAA domain JN439_RS14750 PF02706 Chain length determinant protein JN439_RS14750 PF13807 G-rich domain on putative tyrosine kinase JN439_RS14755 PF01451 Low molecular weight phosphotyrosine protein phosphatase JN439_RS14760 PF02563 Polysaccharide biosynthesis/export protein JN439_RS14760 PF10531 SLBB domain JN439_RS14760 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JN439_RS14765 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JN439_RS14765 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JN439_RS14770 PF01370 NAD dependent epimerase/dehydratase family JN439_RS14775 PF00534 Glycosyl transferases group 1 JN439_RS14815 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JN439_RS14820 PF05523 WxcM-like, C-terminal JN439_RS14825 PF00483 Nucleotidyl transferase JN439_RS14830 PF16363 GDP-mannose 4,6 dehydratase JN439_RS14835 PF00953 Glycosyl transferase family 4 JN439_RS14840 PF02719 Polysaccharide biosynthesis protein JN439_RS14845 PF00953 Glycosyl transferase family 4 JN439_RS14850 PF01370 NAD dependent epimerase/dehydratase family JN439_RS14860 PF00005 ABC transporter JN439_RS14865 PF01061 ABC-2 type transporter JN439_RS14880 PF01370 NAD dependent epimerase/dehydratase family JN439_RS14890 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JN439_RS14900 PF04321 RmlD substrate binding domain JN439_RS14905 PF16363 GDP-mannose 4,6 dehydratase JN439_RS14910 PF05598 Transposase domain (DUF772) JN439_RS14910 PF01609 Transposase DDE domain JN439_RS14915 PF00072 Response regulator receiver domain JN439_RS14915 PF00486 Transcriptional regulatory protein, C terminal JN439_RS14920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS14925 PF02685 Glucokinase JN439_RS14930 PF01380 SIS domain JN439_RS14930 PF01418 Helix-turn-helix domain, rpiR family JN439_RS14935 PF02887 Pyruvate kinase, alpha/beta domain JN439_RS14935 PF00224 Pyruvate kinase, barrel domain JN439_RS14945 PF00873 AcrB/AcrD/AcrF family JN439_RS14950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN439_RS14950 PF02770 Acyl-CoA dehydrogenase, middle domain JN439_RS14950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN439_RS14950 PF09317 Domain of unknown function (DUF1974) JN439_RS14955 PF00440 Bacterial regulatory proteins, tetR family JN439_RS14970 PF13592 Winged helix-turn helix JN439_RS14970 PF13358 DDE superfamily endonuclease JN439_RS14980 PF02321 Outer membrane efflux protein JN439_RS14985 PF00873 AcrB/AcrD/AcrF family JN439_RS14990 PF00529 HlyD membrane-fusion protein of T1SS JN439_RS14990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS14995 PF08361 MAATS-type transcriptional repressor, C-terminal region JN439_RS14995 PF00440 Bacterial regulatory proteins, tetR family JN439_RS15020 PF01479 S4 domain JN439_RS15020 PF00849 RNA pseudouridylate synthase JN439_RS15025 PF04079 Segregation and condensation complex subunit ScpB JN439_RS15030 PF02616 Segregation and condensation protein ScpA JN439_RS15035 PF01300 Telomere recombination JN439_RS15040 PF02811 PHP domain JN439_RS15045 PF04715 Anthranilate synthase component I, N terminal region JN439_RS15045 PF00425 chorismate binding enzyme JN439_RS15055 PF00117 Glutamine amidotransferase class-I JN439_RS15055 PF02885 Glycosyl transferase family, helical bundle domain JN439_RS15055 PF00591 Glycosyl transferase family, a/b domain JN439_RS15060 PF00591 Glycosyl transferase family, a/b domain JN439_RS15060 PF02885 Glycosyl transferase family, helical bundle domain JN439_RS15065 PF00218 Indole-3-glycerol phosphate synthase JN439_RS15065 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JN439_RS15070 PF00291 Pyridoxal-phosphate dependent enzyme JN439_RS15075 PF00290 Tryptophan synthase alpha chain JN439_RS15085 PF00700 Bacterial flagellin C-terminal helical region JN439_RS15085 PF07196 Flagellin hook IN motif JN439_RS15085 PF00669 Bacterial flagellin N-terminal helical region JN439_RS15095 PF01381 Helix-turn-helix JN439_RS15100 PF13657 HipA N-terminal domain JN439_RS15100 PF07804 HipA-like C-terminal domain JN439_RS15120 PF03466 LysR substrate binding domain JN439_RS15120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS15130 PF07237 Protein of unknown function (DUF1428) JN439_RS15135 PF07690 Major Facilitator Superfamily JN439_RS15140 PF01040 UbiA prenyltransferase family JN439_RS15145 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JN439_RS15150 PF00510 Cytochrome c oxidase subunit III JN439_RS15155 PF00115 Cytochrome C and Quinol oxidase polypeptide I JN439_RS15160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JN439_RS15160 PF06481 COX Aromatic Rich Motif JN439_RS15165 PF02627 Carboxymuconolactone decarboxylase family JN439_RS15170 PF03466 LysR substrate binding domain JN439_RS15170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS15180 PF01156 Inosine-uridine preferring nucleoside hydrolase JN439_RS15190 PF01047 MarR family JN439_RS15205 PF00127 Copper binding proteins, plastocyanin/azurin family JN439_RS15210 PF02424 ApbE family JN439_RS15215 PF00011 Hsp20/alpha crystallin family JN439_RS15220 PF00072 Response regulator receiver domain JN439_RS15230 PF03372 Endonuclease/Exonuclease/phosphatase family JN439_RS15240 PF00529 HlyD membrane-fusion protein of T1SS JN439_RS15240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS15245 PF00873 AcrB/AcrD/AcrF family JN439_RS15260 PF10437 Bacterial lipoate protein ligase C-terminus JN439_RS15260 PF03099 Biotin/lipoate A/B protein ligase family JN439_RS15265 PF03707 Bacterial signalling protein N terminal repeat JN439_RS15265 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS15265 PF00563 EAL domain JN439_RS15270 PF00873 AcrB/AcrD/AcrF family JN439_RS15285 PF04143 Sulphur transport JN439_RS15290 PF01022 Bacterial regulatory protein, arsR family JN439_RS15300 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS15310 PF02308 MgtC family JN439_RS15315 PF13407 Periplasmic binding protein domain JN439_RS15315 PF00356 Bacterial regulatory proteins, lacI family JN439_RS15320 PF08244 Glycosyl hydrolases family 32 C terminal JN439_RS15320 PF00251 Glycosyl hydrolases family 32 N-terminal domain JN439_RS15325 PF02378 Phosphotransferase system, EIIC JN439_RS15325 PF00367 phosphotransferase system, EIIB JN439_RS15330 PF00294 pfkB family carbohydrate kinase JN439_RS15335 PF02264 LamB porin JN439_RS15335 PF11471 Maltoporin periplasmic N-terminal extension JN439_RS15340 PF00226 DnaJ domain JN439_RS15340 PF00684 DnaJ central domain JN439_RS15340 PF01556 DnaJ C terminal domain JN439_RS15345 PF00012 Hsp70 protein JN439_RS15350 PF01025 GrpE JN439_RS15355 PF01513 ATP-NAD kinase JN439_RS15360 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS15360 PF17158 Membrane-associated sensor, integral membrane domain JN439_RS15365 PF02463 RecF/RecN/SMC N terminal domain JN439_RS15375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS15380 PF00005 ABC transporter JN439_RS15380 PF02687 FtsX-like permease family JN439_RS15380 PF12704 MacB-like periplasmic core domain JN439_RS15385 PF02321 Outer membrane efflux protein JN439_RS15390 PF04954 Siderophore-interacting protein JN439_RS15390 PF08021 Siderophore-interacting FAD-binding domain JN439_RS15395 PF00793 DAHP synthetase I family JN439_RS15400 PF00816 H-NS histone family JN439_RS15405 PF03466 LysR substrate binding domain JN439_RS15405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS15410 PF00291 Pyridoxal-phosphate dependent enzyme JN439_RS15420 PF00180 Isocitrate/isopropylmalate dehydrogenase JN439_RS15455 PF00583 Acetyltransferase (GNAT) family JN439_RS15460 PF00849 RNA pseudouridylate synthase JN439_RS15465 PF00293 NUDIX domain JN439_RS15475 PF04356 Protein of unknown function (DUF489) JN439_RS15480 PF00206 Lyase JN439_RS15480 PF08328 Adenylosuccinate lyase C-terminal JN439_RS15485 PF08007 Cupin superfamily protein JN439_RS15490 PF02887 Pyruvate kinase, alpha/beta domain JN439_RS15490 PF00224 Pyruvate kinase, barrel domain JN439_RS15495 PF00924 Mechanosensitive ion channel JN439_RS15495 PF12795 Mechanosensitive ion channel porin domain JN439_RS15495 PF12794 Mechanosensitive ion channel inner membrane domain 1 JN439_RS15500 PF01810 LysE type translocator JN439_RS15505 PF10282 Lactonase, 7-bladed beta-propeller JN439_RS15515 PF00860 Permease family JN439_RS15525 PF00390 Malic enzyme, N-terminal domain JN439_RS15525 PF03949 Malic enzyme, NAD binding domain JN439_RS15530 PF12804 MobA-like NTP transferase domain JN439_RS15535 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JN439_RS15540 PF04632 Fusaric acid resistance protein family JN439_RS15555 PF13426 PAS domain JN439_RS15555 PF08447 PAS fold JN439_RS15555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS15575 PF05114 Protein of unknown function (DUF692) JN439_RS15590 PF02028 BCCT, betaine/carnitine/choline family transporter JN439_RS15630 PF00291 Pyridoxal-phosphate dependent enzyme JN439_RS15630 PF14821 Threonine synthase N terminus JN439_RS15635 PF08544 GHMP kinases C terminal JN439_RS15635 PF00288 GHMP kinases N terminal domain JN439_RS15640 PF03447 Homoserine dehydrogenase, NAD binding domain JN439_RS15640 PF01842 ACT domain JN439_RS15640 PF13840 ACT domain JN439_RS15640 PF00742 Homoserine dehydrogenase JN439_RS15640 PF00696 Amino acid kinase family JN439_RS15645 PF00588 SpoU rRNA Methylase family JN439_RS15650 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JN439_RS15665 PF03737 Aldolase/RraA JN439_RS15675 PF00072 Response regulator receiver domain JN439_RS15675 PF00486 Transcriptional regulatory protein, C terminal JN439_RS15690 PF00664 ABC transporter transmembrane region JN439_RS15690 PF00005 ABC transporter JN439_RS15695 PF00664 ABC transporter transmembrane region JN439_RS15695 PF00005 ABC transporter JN439_RS15720 PF01980 tRNA-methyltransferase O JN439_RS15720 PF18389 TrmO C-terminal domain JN439_RS15725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JN439_RS15725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JN439_RS15735 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS15735 PF17862 AAA+ lid domain JN439_RS15735 PF06480 FtsH Extracellular JN439_RS15735 PF01434 Peptidase family M41 JN439_RS15740 PF00291 Pyridoxal-phosphate dependent enzyme JN439_RS15745 PF00381 PTS HPr component phosphorylation site JN439_RS15750 PF00391 PEP-utilising enzyme, mobile domain JN439_RS15750 PF02896 PEP-utilising enzyme, TIM barrel domain JN439_RS15750 PF05524 PEP-utilising enzyme, N-terminal JN439_RS15755 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JN439_RS15760 PF01292 Prokaryotic cytochrome b561 JN439_RS15770 PF12320 Type 5 capsule protein repressor C-terminal domain JN439_RS15770 PF00149 Calcineurin-like phosphoesterase JN439_RS15775 PF00583 Acetyltransferase (GNAT) family JN439_RS15780 PF04381 Putative exonuclease, RdgC JN439_RS15795 PF00999 Sodium/hydrogen exchanger family JN439_RS15795 PF02254 TrkA-N domain JN439_RS15800 PF02954 Bacterial regulatory protein, Fis family JN439_RS15800 PF00072 Response regulator receiver domain JN439_RS15800 PF00158 Sigma-54 interaction domain JN439_RS15840 PF01266 FAD dependent oxidoreductase JN439_RS15845 PF07883 Cupin domain JN439_RS15845 PF01381 Helix-turn-helix JN439_RS15850 PF00171 Aldehyde dehydrogenase family JN439_RS15855 PF00202 Aminotransferase class-III JN439_RS15865 PF00324 Amino acid permease JN439_RS15870 PF13520 Amino acid permease JN439_RS15880 PF02690 Na+/Pi-cotransporter JN439_RS15885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JN439_RS15885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN439_RS15890 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JN439_RS15900 PF10725 Protein of unknown function (DUF2517) JN439_RS15920 PF00072 Response regulator receiver domain JN439_RS15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS15920 PF09308 LuxQ, periplasmic JN439_RS15920 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS15925 PF00589 Phage integrase family JN439_RS15925 PF13356 Arm DNA-binding domain JN439_RS15930 PF00293 NUDIX domain JN439_RS15950 PF00873 AcrB/AcrD/AcrF family JN439_RS15955 PF00239 Resolvase, N terminal domain JN439_RS15955 PF02796 Helix-turn-helix domain of resolvase JN439_RS15990 PF00239 Resolvase, N terminal domain JN439_RS15990 PF02796 Helix-turn-helix domain of resolvase JN439_RS15995 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ JN439_RS16015 PF03432 Relaxase/Mobilisation nuclease domain JN439_RS16030 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JN439_RS16045 PF00929 Exonuclease JN439_RS16080 PF13614 AAA domain JN439_RS16090 PF13614 AAA domain JN439_RS16095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS16095 PF08447 PAS fold JN439_RS16115 PF01476 LysM domain JN439_RS16115 PF17969 L,D-transpeptidase C-terminal domain JN439_RS16115 PF03734 L,D-transpeptidase catalytic domain JN439_RS16125 PF01575 MaoC like domain JN439_RS16130 PF05971 RNA methyltransferase JN439_RS16135 PF00877 NlpC/P60 family JN439_RS16140 PF01648 4'-phosphopantetheinyl transferase superfamily JN439_RS16145 PF00085 Thioredoxin JN439_RS16155 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JN439_RS16160 PF00551 Formyl transferase JN439_RS16160 PF01842 ACT domain JN439_RS16170 PF13091 PLD-like domain JN439_RS16170 PF13396 Phospholipase_D-nuclease N-terminal JN439_RS16185 PF01464 Transglycosylase SLT domain JN439_RS16185 PF10145 Phage-related minor tail protein JN439_RS16185 PF01551 Peptidase family M23 JN439_RS16195 PF00230 Major intrinsic protein JN439_RS16200 PF02075 Crossover junction endodeoxyribonuclease RuvC JN439_RS16205 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JN439_RS16230 PF08497 Radical SAM N-terminal JN439_RS16230 PF11842 Domain of unknown function (DUF3362) JN439_RS16230 PF04055 Radical SAM superfamily JN439_RS16235 PF00873 AcrB/AcrD/AcrF family JN439_RS16245 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS16245 PF17158 Membrane-associated sensor, integral membrane domain JN439_RS16250 PF01734 Patatin-like phospholipase JN439_RS16255 PF00209 Sodium:neurotransmitter symporter family JN439_RS16270 PF00691 OmpA family JN439_RS16270 PF01389 OmpA-like transmembrane domain JN439_RS16275 PF01389 OmpA-like transmembrane domain JN439_RS16275 PF00691 OmpA family JN439_RS16280 PF00691 OmpA family JN439_RS16280 PF01389 OmpA-like transmembrane domain JN439_RS16285 PF00390 Malic enzyme, N-terminal domain JN439_RS16285 PF03949 Malic enzyme, NAD binding domain JN439_RS16290 PF12833 Helix-turn-helix domain JN439_RS16295 PF01554 MatE JN439_RS16300 PF10692 Protein of unknown function (DUF2498) JN439_RS16305 PF00072 Response regulator receiver domain JN439_RS16305 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS16310 PF00860 Permease family JN439_RS16320 PF01235 Sodium:alanine symporter family JN439_RS16325 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JN439_RS16325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JN439_RS16330 PF01699 Sodium/calcium exchanger protein JN439_RS16335 PF08534 Redoxin JN439_RS16340 PF00293 NUDIX domain JN439_RS16350 PF00005 ABC transporter JN439_RS16355 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS16360 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS16365 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS16380 PF00005 ABC transporter JN439_RS16385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN439_RS16385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JN439_RS16405 PF03932 CutC family JN439_RS16410 PF00480 ROK family JN439_RS16420 PF01435 Peptidase family M48 JN439_RS16425 PF12849 PBP superfamily domain JN439_RS16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS16430 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS16430 PF00989 PAS fold JN439_RS16430 PF11808 Phosphate regulon sensor protein PhoR JN439_RS16435 PF00486 Transcriptional regulatory protein, C terminal JN439_RS16435 PF00072 Response regulator receiver domain JN439_RS16440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN439_RS16445 PF07694 5TMR of 5TMR-LYT JN439_RS16445 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS16450 PF02954 Bacterial regulatory protein, Fis family JN439_RS16450 PF00158 Sigma-54 interaction domain JN439_RS16450 PF01590 GAF domain JN439_RS16455 PF00171 Aldehyde dehydrogenase family JN439_RS16465 PF00892 EamA-like transporter family JN439_RS16475 PF00248 Aldo/keto reductase family JN439_RS16485 PF12431 Transcriptional regulator JN439_RS16485 PF00072 Response regulator receiver domain JN439_RS16490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JN439_RS16490 PF00989 PAS fold JN439_RS16490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS16490 PF17203 Single cache domain 3 JN439_RS16495 PF01047 MarR family JN439_RS16500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS16500 PF00529 HlyD membrane-fusion protein of T1SS JN439_RS16520 PF01679 Proteolipid membrane potential modulator JN439_RS16530 PF03477 ATP cone domain JN439_RS16530 PF13597 Anaerobic ribonucleoside-triphosphate reductase JN439_RS16540 PF03120 NAD-dependent DNA ligase OB-fold domain JN439_RS16540 PF01653 NAD-dependent DNA ligase adenylation domain JN439_RS16540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JN439_RS16540 PF12826 Helix-hairpin-helix motif JN439_RS16540 PF00533 BRCA1 C Terminus (BRCT) domain JN439_RS16545 PF04354 ZipA, C-terminal FtsZ-binding domain JN439_RS16550 PF06470 SMC proteins Flexible Hinge Domain JN439_RS16550 PF02463 RecF/RecN/SMC N terminal domain JN439_RS16560 PF03458 UPF0126 domain JN439_RS16570 PF05951 Bacterial protein of unknown function (DUF882) JN439_RS16575 PF03734 L,D-transpeptidase catalytic domain JN439_RS16575 PF01471 Putative peptidoglycan binding domain JN439_RS16590 PF00535 Glycosyl transferase family 2 JN439_RS16605 PF00128 Alpha amylase, catalytic domain JN439_RS16615 PF00072 Response regulator receiver domain JN439_RS16615 PF00196 Bacterial regulatory proteins, luxR family JN439_RS16635 PF02254 TrkA-N domain JN439_RS16635 PF02080 TrkA-C domain JN439_RS16635 PF00999 Sodium/hydrogen exchanger family JN439_RS16640 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS16645 PF01171 PP-loop family JN439_RS16645 PF09179 TilS substrate binding domain JN439_RS16645 PF11734 TilS substrate C-terminal domain JN439_RS16650 PF01431 Peptidase family M13 JN439_RS16650 PF05649 Peptidase family M13 JN439_RS16660 PF00005 ABC transporter JN439_RS16660 PF16326 ABC transporter C-terminal domain JN439_RS16660 PF12848 ABC transporter JN439_RS16670 PF13520 Amino acid permease JN439_RS16680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS16680 PF03466 LysR substrate binding domain JN439_RS16690 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JN439_RS16695 PF14579 Helix-hairpin-helix motif JN439_RS16695 PF01336 OB-fold nucleic acid binding domain JN439_RS16695 PF02811 PHP domain JN439_RS16695 PF07733 Bacterial DNA polymerase III alpha NTPase domain JN439_RS16695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JN439_RS16700 PF01351 Ribonuclease HII JN439_RS16705 PF02684 Lipid-A-disaccharide synthetase JN439_RS16710 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS16710 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JN439_RS16715 PF07977 FabA-like domain JN439_RS16720 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS16720 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JN439_RS16725 PF03938 Outer membrane protein (OmpH-like) JN439_RS16730 PF07244 Surface antigen variable number repeat JN439_RS16730 PF01103 Surface antigen JN439_RS16735 PF17820 PDZ domain JN439_RS16735 PF02163 Peptidase family M50 JN439_RS16740 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JN439_RS16740 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JN439_RS16740 PF13288 DXP reductoisomerase C-terminal domain JN439_RS16750 PF01255 Putative undecaprenyl diphosphate synthase JN439_RS16755 PF01765 Ribosome recycling factor JN439_RS16760 PF00696 Amino acid kinase family JN439_RS16765 PF00889 Elongation factor TS JN439_RS16770 PF00318 Ribosomal protein S2 JN439_RS16775 PF00557 Metallopeptidase family M24 JN439_RS16780 PF01909 Nucleotidyltransferase domain JN439_RS16780 PF01966 HD domain JN439_RS16780 PF08335 GlnD PII-uridylyltransferase JN439_RS16780 PF01842 ACT domain JN439_RS16785 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS16785 PF14602 Hexapeptide repeat of succinyl-transferase JN439_RS16785 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JN439_RS16790 PF11944 Protein of unknown function (DUF3461) JN439_RS16795 PF02378 Phosphotransferase system, EIIC JN439_RS16795 PF00367 phosphotransferase system, EIIB JN439_RS16800 PF07148 Maltose operon periplasmic protein precursor (MalM) JN439_RS16805 PF02264 LamB porin JN439_RS16810 PF00258 Flavodoxin JN439_RS16815 PF00849 RNA pseudouridylate synthase JN439_RS16820 PF04287 tRNA pseudouridine synthase C JN439_RS16845 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JN439_RS16850 PF07348 Syd protein (SUKH-2) JN439_RS16855 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JN439_RS16855 PF14489 QueF-like protein JN439_RS16865 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS16870 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JN439_RS16870 PF03641 Possible lysine decarboxylase JN439_RS16870 PF11892 Domain of unknown function (DUF3412) JN439_RS16875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JN439_RS16875 PF01367 5'-3' exonuclease, C-terminal SAM fold JN439_RS16880 PF00180 Isocitrate/isopropylmalate dehydrogenase JN439_RS16880 PF18324 Hypothetical protein TT1725 JN439_RS16890 PF01728 FtsJ-like methyltransferase JN439_RS16890 PF18125 RlmM ferredoxin-like domain JN439_RS16895 PF04241 Protein of unknown function (DUF423) JN439_RS16905 PF03466 LysR substrate binding domain JN439_RS16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS16910 PF00672 HAMP domain JN439_RS16910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS16915 PF11798 IMS family HHH motif JN439_RS16915 PF11799 impB/mucB/samB family C-terminal domain JN439_RS16915 PF00817 impB/mucB/samB family JN439_RS16930 PF02424 ApbE family JN439_RS16935 PF00111 2Fe-2S iron-sulfur cluster binding domain JN439_RS16935 PF00175 Oxidoreductase NAD-binding domain JN439_RS16935 PF00970 Oxidoreductase FAD-binding domain JN439_RS16940 PF02508 Rnf-Nqr subunit, membrane protein JN439_RS16945 PF02508 Rnf-Nqr subunit, membrane protein JN439_RS16950 PF04205 FMN-binding domain JN439_RS16955 PF03116 NQR2, RnfD, RnfE family JN439_RS16960 PF11973 NQRA C-terminal domain JN439_RS16960 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JN439_RS16965 PF01722 BolA-like protein JN439_RS16970 PF05175 Methyltransferase small domain JN439_RS16980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JN439_RS16990 PF07690 Major Facilitator Superfamily JN439_RS16995 PF03502 Nucleoside-specific channel-forming protein, Tsx JN439_RS17000 PF04461 Protein of unknown function (DUF520) JN439_RS17005 PF08546 Ketopantoate reductase PanE/ApbA C terminal JN439_RS17005 PF02558 Ketopantoate reductase PanE/ApbA JN439_RS17010 PF01965 DJ-1/PfpI family JN439_RS17015 PF03960 ArsC family JN439_RS17020 PF01758 Sodium Bile acid symporter family JN439_RS17030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JN439_RS17030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JN439_RS17040 PF02374 Anion-transporting ATPase JN439_RS17045 PF06953 Arsenical resistance operon trans-acting repressor ArsD JN439_RS17055 PF13356 Arm DNA-binding domain JN439_RS17055 PF00589 Phage integrase family JN439_RS17065 PF13358 DDE superfamily endonuclease JN439_RS17075 PF13358 DDE superfamily endonuclease JN439_RS17075 PF13592 Winged helix-turn helix JN439_RS17080 PF05930 Prophage CP4-57 regulatory protein (AlpA) JN439_RS17090 PF02463 RecF/RecN/SMC N terminal domain JN439_RS17090 PF06470 SMC proteins Flexible Hinge Domain JN439_RS17095 PF13361 UvrD-like helicase C-terminal domain JN439_RS17095 PF00580 UvrD/REP helicase N-terminal domain JN439_RS17100 PF13737 Transposase DDE domain JN439_RS17200 PF04002 RadC-like JAB domain JN439_RS17240 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A JN439_RS17250 PF00271 Helicase conserved C-terminal domain JN439_RS17250 PF00176 SNF2 family N-terminal domain JN439_RS17265 PF01555 DNA methylase JN439_RS17285 PF16363 GDP-mannose 4,6 dehydratase JN439_RS17290 PF00175 Oxidoreductase NAD-binding domain JN439_RS17290 PF00970 Oxidoreductase FAD-binding domain JN439_RS17290 PF00111 2Fe-2S iron-sulfur cluster binding domain JN439_RS17295 PF03063 Prismane/CO dehydrogenase family JN439_RS17300 PF00210 Ferritin-like domain JN439_RS17340 PF00106 short chain dehydrogenase JN439_RS17350 PF03441 FAD binding domain of DNA photolyase JN439_RS17350 PF00875 DNA photolyase JN439_RS17355 PF13411 MerR HTH family regulatory protein JN439_RS17360 PF08349 Protein of unknown function (DUF1722) JN439_RS17385 PF01817 Chorismate mutase type II JN439_RS17385 PF00800 Prephenate dehydratase JN439_RS17420 PF05598 Transposase domain (DUF772) JN439_RS17420 PF01609 Transposase DDE domain JN439_RS17425 PF13358 DDE superfamily endonuclease JN439_RS17425 PF13592 Winged helix-turn helix JN439_RS17475 PF02796 Helix-turn-helix domain of resolvase JN439_RS17475 PF00665 Integrase core domain JN439_RS17480 PF01695 IstB-like ATP binding protein JN439_RS17485 PF00665 Integrase core domain JN439_RS17490 PF01695 IstB-like ATP binding protein JN439_RS17520 PF00816 H-NS histone family JN439_RS17525 PF01609 Transposase DDE domain JN439_RS17525 PF05598 Transposase domain (DUF772) JN439_RS17550 PF01434 Peptidase family M41 JN439_RS17550 PF17862 AAA+ lid domain JN439_RS17550 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS17585 PF00665 Integrase core domain JN439_RS17590 PF01695 IstB-like ATP binding protein JN439_RS17605 PF03976 Polyphosphate kinase 2 (PPK2) JN439_RS17610 PF00916 Sulfate permease family JN439_RS17610 PF01740 STAS domain JN439_RS17615 PF07995 Glucose / Sorbosone dehydrogenase JN439_RS17625 PF00455 DeoR C terminal sensor domain JN439_RS17625 PF08220 DeoR-like helix-turn-helix domain JN439_RS17630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JN439_RS17630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JN439_RS17635 PF17042 Nucleotide-binding C-terminal domain JN439_RS17635 PF07005 Sugar-binding N-terminal domain JN439_RS17640 PF00596 Class II Aldolase and Adducin N-terminal domain JN439_RS17645 PF01261 Xylose isomerase-like TIM barrel JN439_RS17650 PF01370 NAD dependent epimerase/dehydratase family JN439_RS17655 PF02447 GntP family permease JN439_RS17665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS17670 PF03573 outer membrane porin, OprD family JN439_RS17675 PF00106 short chain dehydrogenase JN439_RS17700 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JN439_RS17705 PF12833 Helix-turn-helix domain JN439_RS17705 PF06029 AlkA N-terminal domain JN439_RS17705 PF02805 Metal binding domain of Ada JN439_RS17705 PF00730 HhH-GPD superfamily base excision DNA repair protein JN439_RS17710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JN439_RS17710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JN439_RS17720 PF06906 Protein of unknown function (DUF1272) JN439_RS17730 PF12392 Collagenase JN439_RS17730 PF01136 Peptidase family U32 JN439_RS17740 PF01810 LysE type translocator JN439_RS17745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS17745 PF03466 LysR substrate binding domain JN439_RS17750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JN439_RS17750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JN439_RS17785 PF07694 5TMR of 5TMR-LYT JN439_RS17785 PF06580 Histidine kinase JN439_RS17790 PF00072 Response regulator receiver domain JN439_RS17790 PF04397 LytTr DNA-binding domain JN439_RS17795 PF02554 Carbon starvation protein CstA JN439_RS17795 PF13722 5TM C-terminal transporter carbon starvation CstA JN439_RS17800 PF03575 Peptidase family S51 JN439_RS17805 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JN439_RS17810 PF02416 mttA/Hcf106 family JN439_RS17815 PF05573 NosL JN439_RS17820 PF12679 ABC-2 family transporter protein JN439_RS17825 PF00005 ABC transporter JN439_RS17830 PF05048 Periplasmic copper-binding protein (NosD) JN439_RS17835 PF18764 Nitrous oxide reductase propeller repeat JN439_RS17835 PF18793 Nitrous oxide reductase propeller repeat 2 JN439_RS17835 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JN439_RS17840 PF04205 FMN-binding domain JN439_RS17840 PF12801 4Fe-4S binding domain JN439_RS17845 PF00206 Lyase JN439_RS17845 PF10415 Fumarase C C-terminus JN439_RS17855 PF00171 Aldehyde dehydrogenase family JN439_RS17855 PF14850 DNA-binding domain of Proline dehydrogenase JN439_RS17855 PF01619 Proline dehydrogenase JN439_RS17855 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JN439_RS17860 PF00842 Alanine racemase, C-terminal domain JN439_RS17860 PF01168 Alanine racemase, N-terminal domain JN439_RS17865 PF00772 DnaB-like helicase N terminal domain JN439_RS17865 PF03796 DnaB-like helicase C terminal domain JN439_RS17875 PF02872 5'-nucleotidase, C-terminal domain JN439_RS17875 PF00149 Calcineurin-like phosphoesterase JN439_RS17895 PF00072 Response regulator receiver domain JN439_RS17895 PF00158 Sigma-54 interaction domain JN439_RS17895 PF02954 Bacterial regulatory protein, Fis family JN439_RS17900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN439_RS17900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JN439_RS17910 PF04102 SlyX JN439_RS17915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN439_RS17920 PF09526 Probable metal-binding protein (DUF2387) JN439_RS17930 PF00072 Response regulator receiver domain JN439_RS17930 PF01584 CheW-like domain JN439_RS17935 PF00561 alpha/beta hydrolase fold JN439_RS17940 PF00563 EAL domain JN439_RS17940 PF01590 GAF domain JN439_RS17940 PF00360 Phytochrome region JN439_RS17940 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS17945 PF06794 Uncharacterised protein family (UPF0270) JN439_RS17950 PF00485 Phosphoribulokinase / Uridine kinase family JN439_RS17965 PF02566 OsmC-like protein JN439_RS17970 PF13545 Crp-like helix-turn-helix domain JN439_RS17970 PF00027 Cyclic nucleotide-binding domain JN439_RS17975 PF13847 Methyltransferase domain JN439_RS17980 PF12561 ToxR activated gene A lipoprotein domain JN439_RS17980 PF17945 Beta/Gamma crystallin JN439_RS17990 PF08329 Chitinase A, N-terminal domain JN439_RS17990 PF00704 Glycosyl hydrolases family 18 JN439_RS17995 PF02702 Osmosensitive K+ channel His kinase sensor domain JN439_RS17995 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS17995 PF13492 GAF domain JN439_RS17995 PF13493 Domain of unknown function (DUF4118) JN439_RS17995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS18000 PF12832 MFS_1 like family JN439_RS18005 PF07715 TonB-dependent Receptor Plug Domain JN439_RS18005 PF00593 TonB dependent receptor JN439_RS18025 PF01243 Pyridoxamine 5'-phosphate oxidase JN439_RS18030 PF06228 Haem utilisation ChuX/HutX JN439_RS18040 PF01032 FecCD transport family JN439_RS18045 PF00005 ABC transporter JN439_RS18055 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JN439_RS18055 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JN439_RS18055 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JN439_RS18060 PF01370 NAD dependent epimerase/dehydratase family JN439_RS18065 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JN439_RS18075 PF00535 Glycosyl transferase family 2 JN439_RS18080 PF01551 Peptidase family M23 JN439_RS18080 PF10145 Phage-related minor tail protein JN439_RS18080 PF01464 Transglycosylase SLT domain JN439_RS18085 PF12848 ABC transporter JN439_RS18085 PF00005 ABC transporter JN439_RS18095 PF00860 Permease family JN439_RS18100 PF05099 Tellurite resistance protein TerB JN439_RS18100 PF00226 DnaJ domain JN439_RS18105 PF00483 Nucleotidyl transferase JN439_RS18110 PF01636 Phosphotransferase enzyme family JN439_RS18115 PF03968 OstA-like protein JN439_RS18115 PF04453 LPS transport system D JN439_RS18120 PF00639 PPIC-type PPIASE domain JN439_RS18120 PF09312 SurA N-terminal domain JN439_RS18125 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JN439_RS18130 PF00398 Ribosomal RNA adenine dimethylase JN439_RS18135 PF04379 ApaG domain JN439_RS18140 PF00149 Calcineurin-like phosphoesterase JN439_RS18150 PF00296 Luciferase-like monooxygenase JN439_RS18160 PF07670 Nucleoside recognition JN439_RS18165 PF01926 50S ribosome-binding GTPase JN439_RS18165 PF01018 GTP1/OBG JN439_RS18170 PF01016 Ribosomal L27 protein JN439_RS18175 PF00829 Ribosomal prokaryotic L21 protein JN439_RS18180 PF00348 Polyprenyl synthetase JN439_RS18185 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JN439_RS18190 PF01145 SPFH domain / Band 7 family JN439_RS18195 PF12221 Bacterial membrane protein N terminal JN439_RS18195 PF01145 SPFH domain / Band 7 family JN439_RS18200 PF01926 50S ribosome-binding GTPase JN439_RS18200 PF16360 GTP-binding GTPase Middle Region JN439_RS18200 PF13167 GTP-binding GTPase N-terminal JN439_RS18205 PF17209 Hfq protein JN439_RS18215 PF01119 DNA mismatch repair protein, C-terminal domain JN439_RS18215 PF08676 MutL C terminal dimerisation domain JN439_RS18220 PF01520 N-acetylmuramoyl-L-alanine amidase JN439_RS18225 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JN439_RS18230 PF03853 YjeF-related protein N-terminus JN439_RS18230 PF01256 Carbohydrate kinase JN439_RS18235 PF08331 Domain of unknown function (DUF1730) JN439_RS18240 PF00480 ROK family JN439_RS18250 PF00005 ABC transporter JN439_RS18250 PF09383 NIL domain JN439_RS18255 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS18260 PF03180 NLPA lipoprotein JN439_RS18265 PF02357 Transcription termination factor nusG JN439_RS18270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS18275 PF00563 EAL domain JN439_RS18275 PF03707 Bacterial signalling protein N terminal repeat JN439_RS18275 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS18290 PF01966 HD domain JN439_RS18295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS18295 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS18295 PF01627 Hpt domain JN439_RS18295 PF00989 PAS fold JN439_RS18295 PF00072 Response regulator receiver domain JN439_RS18295 PF18415 Histidine kinase receptor ArcB trans-membrane domain JN439_RS18315 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) JN439_RS18320 PF03466 LysR substrate binding domain JN439_RS18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS18330 PF01259 SAICAR synthetase JN439_RS18335 PF06804 NlpB/DapX lipoprotein JN439_RS18340 PF00701 Dihydrodipicolinate synthetase family JN439_RS18345 PF01842 ACT domain JN439_RS18350 PF00578 AhpC/TSA family JN439_RS18355 PF03887 YfbU domain JN439_RS18360 PF04217 Protein of unknown function, DUF412 JN439_RS18365 PF00871 Acetokinase family JN439_RS18370 PF07085 DRTGG domain JN439_RS18370 PF01515 Phosphate acetyl/butaryl transferase JN439_RS18395 PF13361 UvrD-like helicase C-terminal domain JN439_RS18395 PF00580 UvrD/REP helicase N-terminal domain JN439_RS18400 PF02463 RecF/RecN/SMC N terminal domain JN439_RS18410 PF04221 RelB antitoxin JN439_RS18415 PF01609 Transposase DDE domain JN439_RS18420 PF06067 Domain of unknown function (DUF932) JN439_RS18425 PF02195 ParB-like nuclease domain JN439_RS18430 PF05284 Protein of unknown function (DUF736) JN439_RS18460 PF13614 AAA domain JN439_RS18475 PF10502 Signal peptidase, peptidase S26 JN439_RS18495 PF00005 ABC transporter JN439_RS18500 PF02405 Permease MlaE JN439_RS18515 PF00873 AcrB/AcrD/AcrF family JN439_RS18520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS18525 PF00440 Bacterial regulatory proteins, tetR family JN439_RS18545 PF03743 Bacterial conjugation TrbI-like protein JN439_RS18550 PF03524 Conjugal transfer protein JN439_RS18560 PF04610 TrbL/VirB6 plasmid conjugal transfer protein JN439_RS18575 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JN439_RS18585 PF04956 TrbC/VIRB2 family JN439_RS18590 PF00437 Type II/IV secretion system protein JN439_RS18600 PF02534 Type IV secretory system Conjugative DNA transfer JN439_RS18605 PF03466 LysR substrate binding domain JN439_RS18605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS18620 PF00893 Small Multidrug Resistance protein JN439_RS18640 PF04002 RadC-like JAB domain JN439_RS18645 PF17761 DUF1016 N-terminal domain JN439_RS18645 PF06250 YhcG PDDEXK nuclease domain JN439_RS18665 PF02534 Type IV secretory system Conjugative DNA transfer JN439_RS18675 PF00437 Type II/IV secretion system protein JN439_RS18680 PF04956 TrbC/VIRB2 family JN439_RS18690 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JN439_RS18715 PF03524 Conjugal transfer protein JN439_RS18720 PF03743 Bacterial conjugation TrbI-like protein JN439_RS18730 PF10369 Small subunit of acetolactate synthase JN439_RS18735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JN439_RS18735 PF00205 Thiamine pyrophosphate enzyme, central domain JN439_RS18735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JN439_RS18750 PF01569 PAP2 superfamily JN439_RS18760 PF00682 HMGL-like JN439_RS18760 PF08502 LeuA allosteric (dimerisation) domain JN439_RS18765 PF00180 Isocitrate/isopropylmalate dehydrogenase JN439_RS18770 PF00330 Aconitase family (aconitate hydratase) JN439_RS18775 PF00694 Aconitase C-terminal domain JN439_RS18795 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS18800 PF00005 ABC transporter JN439_RS18810 PF02562 PhoH-like protein JN439_RS18810 PF13638 PIN domain JN439_RS18820 PF02867 Ribonucleotide reductase, barrel domain JN439_RS18820 PF00317 Ribonucleotide reductase, all-alpha domain JN439_RS18820 PF08343 Ribonucleotide reductase N-terminal JN439_RS18850 PF01521 Iron-sulphur cluster biosynthesis JN439_RS18860 PF00654 Voltage gated chloride channel JN439_RS18865 PF00202 Aminotransferase class-III JN439_RS18880 PF01569 PAP2 superfamily JN439_RS18890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS18890 PF03466 LysR substrate binding domain JN439_RS18895 PF00893 Small Multidrug Resistance protein JN439_RS18900 PF00893 Small Multidrug Resistance protein JN439_RS18905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN439_RS18910 PF14814 Bifunctional transglycosylase second domain JN439_RS18910 PF00905 Penicillin binding protein transpeptidase domain JN439_RS18910 PF00912 Transglycosylase JN439_RS18915 PF00270 DEAD/DEAH box helicase JN439_RS18915 PF00271 Helicase conserved C-terminal domain JN439_RS18915 PF04408 Helicase associated domain (HA2) JN439_RS18915 PF08482 ATP-dependent helicase C-terminal JN439_RS18925 PF03749 Sugar fermentation stimulation protein RE domain JN439_RS18925 PF17746 SfsA N-terminal OB domain JN439_RS18930 PF01258 Prokaryotic dksA/traR C4-type zinc finger JN439_RS18935 PF00749 tRNA synthetases class I (E and Q), catalytic domain JN439_RS18940 PF12627 Probable RNA and SrmB- binding site of polymerase A JN439_RS18940 PF12626 Polymerase A arginine-rich C-terminus JN439_RS18940 PF01743 Poly A polymerase head domain JN439_RS18945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JN439_RS18950 PF02548 Ketopantoate hydroxymethyltransferase JN439_RS18955 PF02569 Pantoate-beta-alanine ligase JN439_RS18965 PF01061 ABC-2 type transporter JN439_RS18970 PF00005 ABC transporter JN439_RS18975 PF00156 Phosphoribosyl transferase domain JN439_RS18980 PF00440 Bacterial regulatory proteins, tetR family JN439_RS18985 PF02441 Flavoprotein JN439_RS18990 PF02875 Mur ligase family, glutamate ligase domain JN439_RS18990 PF08245 Mur ligase middle domain JN439_RS18990 PF01225 Mur ligase family, catalytic domain JN439_RS18995 PF00719 Inorganic pyrophosphatase JN439_RS19010 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JN439_RS19025 PF00005 ABC transporter JN439_RS19050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS19050 PF12729 Four helix bundle sensory module for signal transduction JN439_RS19050 PF00672 HAMP domain JN439_RS19070 PF13676 TIR domain JN439_RS19090 PF02080 TrkA-C domain JN439_RS19090 PF03600 Citrate transporter JN439_RS19095 PF00009 Elongation factor Tu GTP binding domain JN439_RS19100 PF01507 Phosphoadenosine phosphosulfate reductase family JN439_RS19105 PF10414 Sirohaem synthase dimerisation region JN439_RS19105 PF14824 Sirohaem biosynthesis protein central JN439_RS19105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JN439_RS19110 PF01145 SPFH domain / Band 7 family JN439_RS19110 PF16200 C-terminal region of band_7 JN439_RS19115 PF01957 NfeD-like C-terminal, partner-binding JN439_RS19125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JN439_RS19125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JN439_RS19130 PF07690 Major Facilitator Superfamily JN439_RS19135 PF01725 Ham1 family JN439_RS19140 PF06969 HemN C-terminal domain JN439_RS19140 PF04055 Radical SAM superfamily JN439_RS19145 PF03889 Alternative ribosome-rescue factor A JN439_RS19155 PF13411 MerR HTH family regulatory protein JN439_RS19160 PF01808 AICARFT/IMPCHase bienzyme JN439_RS19160 PF02142 MGS-like domain JN439_RS19165 PF02843 Phosphoribosylglycinamide synthetase, C domain JN439_RS19165 PF02844 Phosphoribosylglycinamide synthetase, N domain JN439_RS19165 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JN439_RS19180 PF00128 Alpha amylase, catalytic domain JN439_RS19200 PF04542 Sigma-70 region 2 JN439_RS19200 PF04545 Sigma-70, region 4 JN439_RS19200 PF03979 Sigma-70 factor, region 1.1 JN439_RS19200 PF00140 Sigma-70 factor, region 1.2 JN439_RS19200 PF04539 Sigma-70 region 3 JN439_RS19200 PF04546 Sigma-70, non-essential region JN439_RS19205 PF01807 CHC2 zinc finger JN439_RS19205 PF10410 DnaB-helicase binding domain of primase JN439_RS19205 PF08275 DNA primase catalytic core, N-terminal domain JN439_RS19205 PF08278 DNA primase DnaG DnaB-binding JN439_RS19210 PF09424 Yqey-like protein JN439_RS19215 PF01165 Ribosomal protein S21 JN439_RS19220 PF00814 Glycoprotease family JN439_RS19225 PF04545 Sigma-70, region 4 JN439_RS19225 PF04539 Sigma-70 region 3 JN439_RS19225 PF04542 Sigma-70 region 2 JN439_RS19225 PF00140 Sigma-70 factor, region 1.2 JN439_RS19230 PF01551 Peptidase family M23 JN439_RS19230 PF01476 LysM domain JN439_RS19235 PF09335 SNARE associated Golgi protein JN439_RS19245 PF01975 Survival protein SurE JN439_RS19250 PF01142 tRNA pseudouridine synthase D (TruD) JN439_RS19255 PF02542 YgbB family JN439_RS19260 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JN439_RS19265 PF04977 Septum formation initiator JN439_RS19270 PF00113 Enolase, C-terminal TIM barrel domain JN439_RS19270 PF03952 Enolase, N-terminal domain JN439_RS19275 PF06418 CTP synthase N-terminus JN439_RS19275 PF00117 Glutamine amidotransferase class-I JN439_RS19280 PF03819 MazG nucleotide pyrophosphohydrolase domain JN439_RS19285 PF13291 ACT domain JN439_RS19285 PF04607 Region found in RelA / SpoT proteins JN439_RS19285 PF02824 TGS domain JN439_RS19290 PF05958 tRNA (Uracil-5-)-methyltransferase JN439_RS19290 PF01938 TRAM domain JN439_RS19295 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS19295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS19295 PF00672 HAMP domain JN439_RS19295 PF01627 Hpt domain JN439_RS19295 PF00072 Response regulator receiver domain JN439_RS19295 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN439_RS19300 PF07308 Protein of unknown function (DUF1456) JN439_RS19305 PF01510 N-acetylmuramoyl-L-alanine amidase JN439_RS19310 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JN439_RS19315 PF11967 Recombination protein O N terminal JN439_RS19315 PF02565 Recombination protein O C terminal JN439_RS19320 PF01926 50S ribosome-binding GTPase JN439_RS19320 PF07650 KH domain JN439_RS19325 PF00035 Double-stranded RNA binding motif JN439_RS19325 PF14622 Ribonuclease-III-like JN439_RS19330 PF10502 Signal peptidase, peptidase S26 JN439_RS19335 PF00009 Elongation factor Tu GTP binding domain JN439_RS19335 PF00679 Elongation factor G C-terminus JN439_RS19335 PF06421 GTP-binding protein LepA C-terminus JN439_RS19335 PF03144 Elongation factor Tu domain 2 JN439_RS19345 PF17188 MucB/RseB C-terminal domain JN439_RS19345 PF03888 MucB/RseB N-terminal domain JN439_RS19350 PF03872 Anti sigma-E protein RseA, N-terminal domain JN439_RS19350 PF03873 Anti sigma-E protein RseA, C-terminal domain JN439_RS19355 PF08281 Sigma-70, region 4 JN439_RS19355 PF04542 Sigma-70 region 2 JN439_RS19360 PF00890 FAD binding domain JN439_RS19360 PF02910 Fumarate reductase flavoprotein C-term JN439_RS19370 PF03937 Flavinator of succinate dehydrogenase JN439_RS19375 PF01571 Aminomethyltransferase folate-binding domain JN439_RS19380 PF03466 LysR substrate binding domain JN439_RS19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS19395 PF03091 CutA1 divalent ion tolerance protein JN439_RS19400 PF02683 Cytochrome C biogenesis protein transmembrane region JN439_RS19400 PF11412 Disulphide bond corrector protein DsbC JN439_RS19410 PF01266 FAD dependent oxidoreductase JN439_RS19415 PF01116 Fructose-bisphosphate aldolase class-II JN439_RS19420 PF00162 Phosphoglycerate kinase JN439_RS19425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JN439_RS19425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JN439_RS19430 PF00480 ROK family JN439_RS19435 PF01208 Uroporphyrinogen decarboxylase (URO-D) JN439_RS19440 PF00293 NUDIX domain JN439_RS19440 PF09297 NADH pyrophosphatase zinc ribbon domain JN439_RS19445 PF08239 Bacterial SH3 domain JN439_RS19450 PF00027 Cyclic nucleotide-binding domain JN439_RS19450 PF00520 Ion transport protein JN439_RS19455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS19455 PF00672 HAMP domain JN439_RS19455 PF02743 Cache domain JN439_RS19465 PF08335 GlnD PII-uridylyltransferase JN439_RS19465 PF03710 Glutamate-ammonia ligase adenylyltransferase JN439_RS19480 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JN439_RS19480 PF00326 Prolyl oligopeptidase family JN439_RS19485 PF00291 Pyridoxal-phosphate dependent enzyme JN439_RS19490 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS19495 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS19500 PF00005 ABC transporter JN439_RS19505 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS19510 PF13194 Domain of unknown function (DUF4010) JN439_RS19515 PF12464 Maltose acetyltransferase JN439_RS19515 PF14602 Hexapeptide repeat of succinyl-transferase JN439_RS19545 PF14552 Tautomerase enzyme JN439_RS19555 PF03466 LysR substrate binding domain JN439_RS19555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS19560 PF14698 Argininosuccinate lyase C-terminal JN439_RS19560 PF00206 Lyase JN439_RS19565 PF00764 Arginosuccinate synthase JN439_RS19570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JN439_RS19570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JN439_RS19575 PF00696 Amino acid kinase family JN439_RS19580 PF01118 Semialdehyde dehydrogenase, NAD binding domain JN439_RS19580 PF02774 Semialdehyde dehydrogenase, dimerisation domain JN439_RS19585 PF07687 Peptidase dimerisation domain JN439_RS19585 PF01546 Peptidase family M20/M25/M40 JN439_RS19590 PF00311 Phosphoenolpyruvate carboxylase JN439_RS19595 PF00563 EAL domain JN439_RS19595 PF08448 PAS fold JN439_RS19595 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS19595 PF13426 PAS domain JN439_RS19595 PF08447 PAS fold JN439_RS19595 PF05231 MASE1 JN439_RS19600 PF04073 Aminoacyl-tRNA editing domain JN439_RS19620 PF00392 Bacterial regulatory proteins, gntR family JN439_RS19620 PF00155 Aminotransferase class I and II JN439_RS19635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS19635 PF03466 LysR substrate binding domain JN439_RS19640 PF03788 LrgA family JN439_RS19645 PF04172 LrgB-like family JN439_RS19650 PF00696 Amino acid kinase family JN439_RS19650 PF00742 Homoserine dehydrogenase JN439_RS19650 PF03447 Homoserine dehydrogenase, NAD binding domain JN439_RS19655 PF01053 Cys/Met metabolism PLP-dependent enzyme JN439_RS19660 PF01340 Met Apo-repressor, MetJ JN439_RS19670 PF01588 Putative tRNA binding domain JN439_RS19675 PF03222 Tryptophan/tyrosine permease family JN439_RS19680 PF00459 Inositol monophosphatase family JN439_RS19685 PF00293 NUDIX domain JN439_RS19690 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS19695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN439_RS19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS19700 PF03466 LysR substrate binding domain JN439_RS19705 PF01479 S4 domain JN439_RS19705 PF00579 tRNA synthetases class I (W and Y) JN439_RS19710 PF00196 Bacterial regulatory proteins, luxR family JN439_RS19715 PF01203 Type II secretion system (T2SS), protein N JN439_RS19720 PF04612 Type II secretion system (T2SS), protein M JN439_RS19725 PF12693 GspL periplasmic domain JN439_RS19725 PF05134 Type II secretion system (T2SS), protein L JN439_RS19730 PF03934 Type II secretion system (T2SS), protein K JN439_RS19740 PF07963 Prokaryotic N-terminal methylation motif JN439_RS19740 PF11612 Type II secretion system (T2SS), protein J JN439_RS19745 PF07963 Prokaryotic N-terminal methylation motif JN439_RS19745 PF02501 Type II secretion system (T2SS), protein I JN439_RS19750 PF12019 Type II transport protein GspH JN439_RS19750 PF07963 Prokaryotic N-terminal methylation motif JN439_RS19755 PF08334 Type II secretion system (T2SS), protein G JN439_RS19755 PF07963 Prokaryotic N-terminal methylation motif JN439_RS19760 PF00482 Type II secretion system (T2SS), protein F JN439_RS19765 PF00437 Type II/IV secretion system protein JN439_RS19770 PF03958 Bacterial type II/III secretion system short domain JN439_RS19770 PF00263 Bacterial type II and III secretion system protein JN439_RS19775 PF11356 Type II secretion system protein C JN439_RS19780 PF01479 S4 domain JN439_RS19785 PF01430 Hsp33 protein JN439_RS19790 PF01293 Phosphoenolpyruvate carboxykinase JN439_RS19795 PF00392 Bacterial regulatory proteins, gntR family JN439_RS19800 PF01321 Creatinase/Prolidase N-terminal domain JN439_RS19800 PF00557 Metallopeptidase family M24 JN439_RS19810 PF05433 Glycine zipper 2TM domain JN439_RS19815 PF01928 CYTH domain JN439_RS19820 PF01865 Protein of unknown function DUF47 JN439_RS19825 PF01384 Phosphate transporter family JN439_RS19830 PF01743 Poly A polymerase head domain JN439_RS19830 PF01966 HD domain JN439_RS19830 PF12627 Probable RNA and SrmB- binding site of polymerase A JN439_RS19835 PF01471 Putative peptidoglycan binding domain JN439_RS19835 PF13401 AAA domain JN439_RS19840 PF16537 Type II secretion system protein B JN439_RS19845 PF10576 Iron-sulfur binding domain of endonuclease III JN439_RS19845 PF00730 HhH-GPD superfamily base excision DNA repair protein JN439_RS19845 PF00633 Helix-hairpin-helix motif JN439_RS19845 PF14815 NUDIX domain JN439_RS19850 PF04362 Bacterial Fe(2+) trafficking JN439_RS19855 PF01464 Transglycosylase SLT domain JN439_RS19855 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JN439_RS19865 PF00657 GDSL-like Lipase/Acylhydrolase JN439_RS19870 PF01389 OmpA-like transmembrane domain JN439_RS19870 PF00691 OmpA family JN439_RS19875 PF03886 ABC-type transport auxiliary lipoprotein component JN439_RS19880 PF02470 MlaD protein JN439_RS19885 PF04403 Paraquat-inducible protein A JN439_RS19890 PF17209 Hfq protein JN439_RS19895 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS19900 PF00563 EAL domain JN439_RS19900 PF01590 GAF domain JN439_RS19900 PF00360 Phytochrome region JN439_RS19900 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS19905 PF00701 Dihydrodipicolinate synthetase family JN439_RS19910 PF05175 Methyltransferase small domain JN439_RS19910 PF08468 Methyltransferase small domain N-terminal JN439_RS19915 PF00483 Nucleotidyl transferase JN439_RS19920 PF00534 Glycosyl transferases group 1 JN439_RS19920 PF08323 Starch synthase catalytic domain JN439_RS19955 PF03553 Na+/H+ antiporter family JN439_RS19960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS19960 PF03466 LysR substrate binding domain JN439_RS19965 PF13416 Bacterial extracellular solute-binding protein JN439_RS19970 PF00005 ABC transporter JN439_RS19970 PF08402 TOBE domain JN439_RS19975 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS19980 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS19985 PF00171 Aldehyde dehydrogenase family JN439_RS19990 PF01040 UbiA prenyltransferase family JN439_RS20015 PF00510 Cytochrome c oxidase subunit III JN439_RS20020 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JN439_RS20025 PF00115 Cytochrome C and Quinol oxidase polypeptide I JN439_RS20030 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JN439_RS20030 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JN439_RS20035 PF08351 Domain of unknown function (DUF1726) JN439_RS20035 PF13718 GNAT acetyltransferase 2 JN439_RS20035 PF05127 Helicase JN439_RS20035 PF17176 tRNA-binding domain JN439_RS20045 PF04324 BFD-like [2Fe-2S] binding domain JN439_RS20050 PF00210 Ferritin-like domain JN439_RS20055 PF02142 MGS-like domain JN439_RS20070 PF17763 Glutaminase/Asparaginase C-terminal domain JN439_RS20070 PF00710 Asparaginase, N-terminal JN439_RS20085 PF00356 Bacterial regulatory proteins, lacI family JN439_RS20090 PF00367 phosphotransferase system, EIIB JN439_RS20090 PF02378 Phosphotransferase system, EIIC JN439_RS20095 PF11941 Domain of unknown function (DUF3459) JN439_RS20095 PF00128 Alpha amylase, catalytic domain JN439_RS20100 PF14602 Hexapeptide repeat of succinyl-transferase JN439_RS20100 PF12464 Maltose acetyltransferase JN439_RS20105 PF01037 Lrp/AsnC ligand binding domain JN439_RS20110 PF00892 EamA-like transporter family JN439_RS20135 PF04222 Protein of unknown function (DUF416) JN439_RS20140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN439_RS20145 PF08525 Opacity-associated protein A N-terminal motif JN439_RS20145 PF01476 LysM domain JN439_RS20145 PF01551 Peptidase family M23 JN439_RS20165 PF01297 Zinc-uptake complex component A periplasmic JN439_RS20170 PF00005 ABC transporter JN439_RS20175 PF00950 ABC 3 transport family JN439_RS20180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS20180 PF03466 LysR substrate binding domain JN439_RS20190 PF03167 Uracil DNA glycosylase superfamily JN439_RS20195 PF00892 EamA-like transporter family JN439_RS20200 PF01541 GIY-YIG catalytic domain JN439_RS20215 PF04012 PspA/IM30 family JN439_RS20220 PF01553 Acyltransferase JN439_RS20240 PF00578 AhpC/TSA family JN439_RS20250 PF01556 DnaJ C terminal domain JN439_RS20250 PF00226 DnaJ domain JN439_RS20250 PF00684 DnaJ central domain JN439_RS20290 PF01609 Transposase DDE domain JN439_RS20290 PF13808 DDE_Tnp_1-associated JN439_RS20300 PF01609 Transposase DDE domain JN439_RS20300 PF05598 Transposase domain (DUF772) JN439_RS20320 PF03989 DNA gyrase C-terminal domain, beta-propeller JN439_RS20320 PF00521 DNA gyrase/topoisomerase IV, subunit A JN439_RS20325 PF00986 DNA gyrase B subunit, carboxyl terminus JN439_RS20325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS20325 PF01751 Toprim domain JN439_RS20325 PF00204 DNA gyrase B JN439_RS20330 PF04632 Fusaric acid resistance protein family JN439_RS20335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS20335 PF00529 HlyD membrane-fusion protein of T1SS JN439_RS20340 PF07869 Protein of unknown function (DUF1656) JN439_RS20350 PF00293 NUDIX domain JN439_RS20355 PF05728 Uncharacterised protein family (UPF0227) JN439_RS20360 PF00149 Calcineurin-like phosphoesterase JN439_RS20365 PF06853 Protein of unknown function (DUF1249) JN439_RS20370 PF00293 NUDIX domain JN439_RS20375 PF02321 Outer membrane efflux protein JN439_RS20380 PF01609 Transposase DDE domain JN439_RS20380 PF13006 Insertion element 4 transposase N-terminal JN439_RS20385 PF01467 Cytidylyltransferase-like JN439_RS20385 PF00294 pfkB family carbohydrate kinase JN439_RS20390 PF03279 Bacterial lipid A biosynthesis acyltransferase JN439_RS20395 PF02872 5'-nucleotidase, C-terminal domain JN439_RS20395 PF00149 Calcineurin-like phosphoesterase JN439_RS20400 PF01810 LysE type translocator JN439_RS20405 PF00196 Bacterial regulatory proteins, luxR family JN439_RS20405 PF03472 Autoinducer binding domain JN439_RS20410 PF00765 Autoinducer synthase JN439_RS20415 PF03466 LysR substrate binding domain JN439_RS20415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS20420 PF08206 Ribonuclease B OB domain JN439_RS20420 PF17876 Cold shock domain JN439_RS20420 PF00773 RNB domain JN439_RS20425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JN439_RS20425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JN439_RS20425 PF02378 Phosphotransferase system, EIIC JN439_RS20430 PF01232 Mannitol dehydrogenase Rossmann domain JN439_RS20430 PF08125 Mannitol dehydrogenase C-terminal domain JN439_RS20435 PF05068 Mannitol repressor JN439_RS20440 PF02080 TrkA-C domain JN439_RS20440 PF03471 Transporter associated domain JN439_RS20440 PF00999 Sodium/hydrogen exchanger family JN439_RS20455 PF01544 CorA-like Mg2+ transporter protein JN439_RS20460 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JN439_RS20475 PF07662 Na+ dependent nucleoside transporter C-terminus JN439_RS20475 PF01773 Na+ dependent nucleoside transporter N-terminus JN439_RS20475 PF07670 Nucleoside recognition JN439_RS20480 PF00271 Helicase conserved C-terminal domain JN439_RS20480 PF00270 DEAD/DEAH box helicase JN439_RS20480 PF03880 DbpA RNA binding domain JN439_RS20500 PF01040 UbiA prenyltransferase family JN439_RS20505 PF00425 chorismate binding enzyme JN439_RS20510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JN439_RS20510 PF16582 Middle domain of thiamine pyrophosphate JN439_RS20510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JN439_RS20515 PF12697 Alpha/beta hydrolase family JN439_RS20520 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS20525 PF13378 Enolase C-terminal domain-like JN439_RS20530 PF00501 AMP-binding enzyme JN439_RS20530 PF13193 AMP-binding enzyme C-terminal domain JN439_RS20535 PF01752 Collagenase JN439_RS20535 PF08453 Peptidase family M9 N-terminal JN439_RS20540 PF02698 DUF218 domain JN439_RS20545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JN439_RS20545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JN439_RS20555 PF00561 alpha/beta hydrolase fold JN439_RS20575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN439_RS20575 PF12793 Sugar transport-related sRNA regulator N-term JN439_RS20585 PF01053 Cys/Met metabolism PLP-dependent enzyme JN439_RS20595 PF00465 Iron-containing alcohol dehydrogenase JN439_RS20610 PF00106 short chain dehydrogenase JN439_RS20630 PF02308 MgtC family JN439_RS20635 PF16657 Maltogenic Amylase, C-terminal domain JN439_RS20635 PF02903 Alpha amylase, N-terminal ig-like domain JN439_RS20635 PF00128 Alpha amylase, catalytic domain JN439_RS20645 PF00884 Sulfatase JN439_RS20650 PF01037 Lrp/AsnC ligand binding domain JN439_RS20660 PF04204 Homoserine O-succinyltransferase JN439_RS20670 PF02464 Competence-damaged protein JN439_RS20670 PF00994 Probable molybdopterin binding domain JN439_RS20675 PF04307 LexA-binding, inner membrane-associated putative hydrolase JN439_RS20690 PF07722 Peptidase C26 JN439_RS20700 PF13419 Haloacid dehalogenase-like hydrolase JN439_RS20705 PF00589 Phage integrase family JN439_RS20705 PF02899 Phage integrase, N-terminal SAM-like domain JN439_RS20715 PF01678 Diaminopimelate epimerase JN439_RS20720 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JN439_RS20720 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JN439_RS20730 PF01491 Frataxin-like domain JN439_RS20735 PF02230 Phospholipase/Carboxylesterase JN439_RS20740 PF01295 Adenylate cyclase, class-I JN439_RS20740 PF12633 Adenylate cyclase NT domain JN439_RS20745 PF03900 Porphobilinogen deaminase, C-terminal domain JN439_RS20745 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JN439_RS20750 PF02602 Uroporphyrinogen-III synthase HemD JN439_RS20755 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JN439_RS20760 PF07219 HemY protein N-terminus JN439_RS20760 PF07719 Tetratricopeptide repeat JN439_RS20765 PF01523 Putative modulator of DNA gyrase JN439_RS20770 PF04751 Protein of unknown function (DUF615) JN439_RS20780 PF04363 Protein of unknown function (DUF496) JN439_RS20815 PF07883 Cupin domain JN439_RS20815 PF01381 Helix-turn-helix JN439_RS20820 PF03594 Benzoate membrane transport protein JN439_RS20830 PF02219 Methylenetetrahydrofolate reductase JN439_RS20850 PF03922 OmpW family JN439_RS20855 PF17760 UvrA interaction domain JN439_RS20855 PF00005 ABC transporter JN439_RS20855 PF17755 UvrA DNA-binding domain JN439_RS20860 PF00196 Bacterial regulatory proteins, luxR family JN439_RS20865 PF00436 Single-strand binding protein family JN439_RS20890 PF09722 Protein of unknown function (DUF2384) JN439_RS20895 PF13358 DDE superfamily endonuclease JN439_RS20895 PF13592 Winged helix-turn helix JN439_RS20910 PF00872 Transposase, Mutator family JN439_RS20915 PF00239 Resolvase, N terminal domain JN439_RS20915 PF02796 Helix-turn-helix domain of resolvase JN439_RS20920 PF13700 Domain of unknown function (DUF4158) JN439_RS20920 PF01526 Tn3 transposase DDE domain JN439_RS20930 PF00665 Integrase core domain JN439_RS20945 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX JN439_RS20950 PF03062 MBOAT, membrane-bound O-acyltransferase family JN439_RS20965 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JN439_RS20965 PF13181 Tetratricopeptide repeat JN439_RS20970 PF01270 Glycosyl hydrolases family 8 JN439_RS20975 PF03552 Cellulose synthase JN439_RS20975 PF00535 Glycosyl transferase family 2 JN439_RS20975 PF07238 PilZ domain JN439_RS21005 PF01381 Helix-turn-helix JN439_RS21010 PF00816 H-NS histone family JN439_RS21020 PF01609 Transposase DDE domain JN439_RS21020 PF05598 Transposase domain (DUF772) JN439_RS21080 PF13538 UvrD-like helicase C-terminal domain JN439_RS21085 PF09722 Protein of unknown function (DUF2384) JN439_RS21100 PF01695 IstB-like ATP binding protein JN439_RS21105 PF00665 Integrase core domain JN439_RS21115 PF01381 Helix-turn-helix JN439_RS21175 PF05711 Macrocin-O-methyltransferase (TylF) JN439_RS21185 PF08007 Cupin superfamily protein JN439_RS21190 PF09722 Protein of unknown function (DUF2384) JN439_RS21210 PF00816 H-NS histone family JN439_RS21270 PF07690 Major Facilitator Superfamily JN439_RS21275 PF02909 Tetracyclin repressor-like, C-terminal domain JN439_RS21275 PF00440 Bacterial regulatory proteins, tetR family JN439_RS21290 PF01381 Helix-turn-helix JN439_RS21310 PF00313 'Cold-shock' DNA-binding domain JN439_RS21315 PF00672 HAMP domain JN439_RS21315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS21315 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS21320 PF00486 Transcriptional regulatory protein, C terminal JN439_RS21320 PF00072 Response regulator receiver domain JN439_RS21330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS21330 PF00672 HAMP domain JN439_RS21340 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS21340 PF08448 PAS fold JN439_RS21345 PF00543 Nitrogen regulatory protein P-II JN439_RS21350 PF00909 Ammonium Transporter Family JN439_RS21380 PF00905 Penicillin binding protein transpeptidase domain JN439_RS21380 PF00912 Transglycosylase JN439_RS21380 PF17092 Penicillin-binding protein OB-like domain JN439_RS21385 PF13538 UvrD-like helicase C-terminal domain JN439_RS21390 PF12705 PD-(D/E)XK nuclease superfamily JN439_RS21390 PF00580 UvrD/REP helicase N-terminal domain JN439_RS21390 PF13361 UvrD-like helicase C-terminal domain JN439_RS21395 PF17946 RecC C-terminal domain JN439_RS21400 PF07681 DoxX JN439_RS21405 PF17954 Quercetinase C-terminal cupin domain JN439_RS21405 PF02678 Pirin JN439_RS21415 PF03466 LysR substrate binding domain JN439_RS21415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS21425 PF07702 UTRA domain JN439_RS21425 PF00392 Bacterial regulatory proteins, gntR family JN439_RS21440 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS21450 PF00005 ABC transporter JN439_RS21450 PF08402 TOBE domain JN439_RS21460 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS21460 PF00072 Response regulator receiver domain JN439_RS21480 PF00583 Acetyltransferase (GNAT) family JN439_RS21485 PF00199 Catalase JN439_RS21485 PF06628 Catalase-related immune-responsive JN439_RS21505 PF00293 NUDIX domain JN439_RS21510 PF01594 AI-2E family transporter JN439_RS21515 PF00106 short chain dehydrogenase JN439_RS21520 PF04371 Porphyromonas-type peptidyl-arginine deiminase JN439_RS21525 PF13416 Bacterial extracellular solute-binding protein JN439_RS21530 PF00795 Carbon-nitrogen hydrolase JN439_RS21535 PF04371 Porphyromonas-type peptidyl-arginine deiminase JN439_RS21540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS21540 PF03466 LysR substrate binding domain JN439_RS21545 PF00989 PAS fold JN439_RS21545 PF00158 Sigma-54 interaction domain JN439_RS21545 PF02954 Bacterial regulatory protein, Fis family JN439_RS21550 PF03610 PTS system fructose IIA component JN439_RS21550 PF05524 PEP-utilising enzyme, N-terminal JN439_RS21550 PF00391 PEP-utilising enzyme, mobile domain JN439_RS21550 PF00381 PTS HPr component phosphorylation site JN439_RS21555 PF02734 DAK2 domain JN439_RS21560 PF02733 Dak1 domain JN439_RS21565 PF00860 Permease family JN439_RS21570 PF03079 ARD/ARD' family JN439_RS21610 PF00009 Elongation factor Tu GTP binding domain JN439_RS21610 PF03144 Elongation factor Tu domain 2 JN439_RS21610 PF03143 Elongation factor Tu C-terminal domain JN439_RS21615 PF03144 Elongation factor Tu domain 2 JN439_RS21615 PF00009 Elongation factor Tu GTP binding domain JN439_RS21615 PF14492 Elongation Factor G, domain II JN439_RS21615 PF00679 Elongation factor G C-terminus JN439_RS21615 PF03764 Elongation factor G, domain IV JN439_RS21620 PF00177 Ribosomal protein S7p/S5e JN439_RS21625 PF00164 Ribosomal protein S12/S23 JN439_RS21630 PF04077 DsrH like protein JN439_RS21635 PF02635 DsrE/DsrF-like family JN439_RS21640 PF02635 DsrE/DsrF-like family JN439_RS21645 PF01042 Endoribonuclease L-PSP JN439_RS21650 PF08348 YheO-like PAS domain JN439_RS21650 PF13309 HTH domain JN439_RS21655 PF04997 RNA polymerase Rpb1, domain 1 JN439_RS21655 PF04998 RNA polymerase Rpb1, domain 5 JN439_RS21655 PF04983 RNA polymerase Rpb1, domain 3 JN439_RS21655 PF05000 RNA polymerase Rpb1, domain 4 JN439_RS21655 PF00623 RNA polymerase Rpb1, domain 2 JN439_RS21660 PF04565 RNA polymerase Rpb2, domain 3 JN439_RS21660 PF04563 RNA polymerase beta subunit JN439_RS21660 PF04560 RNA polymerase Rpb2, domain 7 JN439_RS21660 PF00562 RNA polymerase Rpb2, domain 6 JN439_RS21660 PF04561 RNA polymerase Rpb2, domain 2 JN439_RS21660 PF10385 RNA polymerase beta subunit external 1 domain JN439_RS21665 PF16320 Ribosomal protein L7/L12 dimerisation domain JN439_RS21665 PF00542 Ribosomal protein L7/L12 C-terminal domain JN439_RS21670 PF00466 Ribosomal protein L10 JN439_RS21675 PF00687 Ribosomal protein L1p/L10e family JN439_RS21680 PF03946 Ribosomal protein L11, N-terminal domain JN439_RS21680 PF00298 Ribosomal protein L11, RNA binding domain JN439_RS21685 PF02357 Transcription termination factor nusG JN439_RS21685 PF00467 KOW motif JN439_RS21690 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JN439_RS21700 PF03143 Elongation factor Tu C-terminal domain JN439_RS21700 PF03144 Elongation factor Tu domain 2 JN439_RS21700 PF00009 Elongation factor Tu GTP binding domain JN439_RS21715 PF00485 Phosphoribulokinase / Uridine kinase family JN439_RS21720 PF02237 Biotin protein ligase C terminal domain JN439_RS21720 PF03099 Biotin/lipoate A/B protein ligase family JN439_RS21720 PF08279 HTH domain JN439_RS21725 PF01565 FAD binding domain JN439_RS21725 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JN439_RS21730 PF02080 TrkA-C domain JN439_RS21730 PF02254 TrkA-N domain JN439_RS21735 PF02386 Cation transport protein JN439_RS21740 PF01131 DNA topoisomerase JN439_RS21740 PF01751 Toprim domain JN439_RS21745 PF03264 NapC/NirT cytochrome c family, N-terminal region JN439_RS21750 PF01568 Molydopterin dinucleotide binding domain JN439_RS21750 PF00384 Molybdopterin oxidoreductase JN439_RS21750 PF18364 Molybdopterin oxidoreductase N-terminal domain JN439_RS21760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS21765 PF00486 Transcriptional regulatory protein, C terminal JN439_RS21765 PF00072 Response regulator receiver domain JN439_RS21780 PF01794 Ferric reductase like transmembrane component JN439_RS21785 PF00174 Oxidoreductase molybdopterin binding domain JN439_RS21790 PF06496 Protein of unknown function (DUF1097) JN439_RS21795 PF00158 Sigma-54 interaction domain JN439_RS21795 PF00072 Response regulator receiver domain JN439_RS21805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS21805 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS21825 PF00478 IMP dehydrogenase / GMP reductase domain JN439_RS21825 PF00571 CBS domain JN439_RS21835 PF01037 Lrp/AsnC ligand binding domain JN439_RS21840 PF03590 Aspartate-ammonia ligase JN439_RS21855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS21855 PF03466 LysR substrate binding domain JN439_RS21860 PF02861 Clp amino terminal domain, pathogenicity island component JN439_RS21860 PF17871 AAA lid domain JN439_RS21860 PF07724 AAA domain (Cdc48 subfamily) JN439_RS21860 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS21860 PF10431 C-terminal, D2-small domain, of ClpB protein JN439_RS21865 PF02578 Multi-copper polyphenol oxidoreductase laccase JN439_RS21870 PF00849 RNA pseudouridylate synthase JN439_RS21870 PF01479 S4 domain JN439_RS21875 PF13525 Outer membrane lipoprotein JN439_RS21880 PF03313 Serine dehydratase alpha chain JN439_RS21885 PF13309 HTH domain JN439_RS21885 PF08348 YheO-like PAS domain JN439_RS21890 PF02233 NAD(P) transhydrogenase beta subunit JN439_RS21895 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JN439_RS21895 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JN439_RS21895 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JN439_RS21900 PF00465 Iron-containing alcohol dehydrogenase JN439_RS21905 PF06719 AraC-type transcriptional regulator N-terminus JN439_RS21905 PF12833 Helix-turn-helix domain JN439_RS21910 PF08212 Lipocalin-like domain JN439_RS21920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS21920 PF02743 Cache domain JN439_RS21920 PF00672 HAMP domain JN439_RS21930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS21930 PF03466 LysR substrate binding domain JN439_RS21950 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JN439_RS21950 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JN439_RS21955 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JN439_RS21955 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JN439_RS21960 PF01316 Arginine repressor, DNA binding domain JN439_RS21960 PF02863 Arginine repressor, C-terminal domain JN439_RS21965 PF03606 C4-dicarboxylate anaerobic carrier JN439_RS21970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JN439_RS21970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JN439_RS21975 PF00696 Amino acid kinase family JN439_RS21990 PF02743 Cache domain JN439_RS21990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS21990 PF00672 HAMP domain JN439_RS21995 PF02653 Branched-chain amino acid transport system / permease component JN439_RS22000 PF00005 ABC transporter JN439_RS22005 PF13407 Periplasmic binding protein domain JN439_RS22010 PF16353 Domain of unknown function(DUF4981) JN439_RS22010 PF02837 Glycosyl hydrolases family 2, sugar binding domain JN439_RS22010 PF00703 Glycosyl hydrolases family 2 JN439_RS22010 PF02929 Beta galactosidase small chain JN439_RS22010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JN439_RS22015 PF00356 Bacterial regulatory proteins, lacI family JN439_RS22020 PF16363 GDP-mannose 4,6 dehydratase JN439_RS22025 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JN439_RS22025 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JN439_RS22030 PF10509 Galactokinase galactose-binding signature JN439_RS22030 PF08544 GHMP kinases C terminal JN439_RS22030 PF00288 GHMP kinases N terminal domain JN439_RS22035 PF01263 Aldose 1-epimerase JN439_RS22040 PF00248 Aldo/keto reductase family JN439_RS22045 PF02673 Bacitracin resistance protein BacA JN439_RS22050 PF12973 ChrR Cupin-like domain JN439_RS22055 PF04545 Sigma-70, region 4 JN439_RS22055 PF04542 Sigma-70 region 2 JN439_RS22065 PF03485 Arginyl tRNA synthetase N terminal domain JN439_RS22065 PF00750 tRNA synthetases class I (R) JN439_RS22065 PF05746 DALR anticodon binding domain JN439_RS22075 PF00227 Proteasome subunit JN439_RS22080 PF10431 C-terminal, D2-small domain, of ClpB protein JN439_RS22080 PF07724 AAA domain (Cdc48 subfamily) JN439_RS22080 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS22085 PF07690 Major Facilitator Superfamily JN439_RS22100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS22105 PF00005 ABC transporter JN439_RS22120 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JN439_RS22120 PF04324 BFD-like [2Fe-2S] binding domain JN439_RS22120 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JN439_RS22120 PF18267 Rubredoxin NAD+ reductase C-terminal domain JN439_RS22120 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS22125 PF13806 Rieske-like [2Fe-2S] domain JN439_RS22130 PF01226 Formate/nitrite transporter JN439_RS22135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JN439_RS22135 PF14824 Sirohaem biosynthesis protein central JN439_RS22135 PF10414 Sirohaem synthase dimerisation region JN439_RS22140 PF00571 CBS domain JN439_RS22140 PF01769 Divalent cation transporter JN439_RS22140 PF03448 MgtE intracellular N domain JN439_RS22145 PF03737 Aldolase/RraA JN439_RS22150 PF01610 Transposase JN439_RS22150 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS22150 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS22155 PF02592 Putative vitamin uptake transporter JN439_RS22165 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JN439_RS22170 PF00034 Cytochrome c JN439_RS22175 PF00271 Helicase conserved C-terminal domain JN439_RS22175 PF00270 DEAD/DEAH box helicase JN439_RS22175 PF00570 HRDC domain JN439_RS22175 PF16124 RecQ zinc-binding JN439_RS22175 PF09382 RQC domain JN439_RS22180 PF03061 Thioesterase superfamily JN439_RS22195 PF03475 3-alpha domain JN439_RS22195 PF03473 MOSC domain JN439_RS22200 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS22205 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS22210 PF00005 ABC transporter JN439_RS22210 PF08402 TOBE domain JN439_RS22215 PF13416 Bacterial extracellular solute-binding protein JN439_RS22220 PF13416 Bacterial extracellular solute-binding protein JN439_RS22225 PF00202 Aminotransferase class-III JN439_RS22230 PF00120 Glutamine synthetase, catalytic domain JN439_RS22235 PF01258 Prokaryotic dksA/traR C4-type zinc finger JN439_RS22250 PF05981 CreA protein JN439_RS22255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN439_RS22255 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN439_RS22260 PF00012 Hsp70 protein JN439_RS22275 PF02903 Alpha amylase, N-terminal ig-like domain JN439_RS22275 PF00128 Alpha amylase, catalytic domain JN439_RS22290 PF05958 tRNA (Uracil-5-)-methyltransferase JN439_RS22295 PF00072 Response regulator receiver domain JN439_RS22295 PF00486 Transcriptional regulatory protein, C terminal JN439_RS22305 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS22305 PF00672 HAMP domain JN439_RS22305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS22315 PF00390 Malic enzyme, N-terminal domain JN439_RS22315 PF03949 Malic enzyme, NAD binding domain JN439_RS22320 PF13460 NAD(P)H-binding JN439_RS22320 PF11066 Protein of unknown function (DUF2867) JN439_RS22325 PF01197 Ribosomal protein L31 JN439_RS22330 PF18074 Primosomal protein N C-terminal domain JN439_RS22330 PF17764 3′ DNA-binding domain (3′BD) JN439_RS22330 PF00271 Helicase conserved C-terminal domain JN439_RS22330 PF00270 DEAD/DEAH box helicase JN439_RS22330 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JN439_RS22335 PF13592 Winged helix-turn helix JN439_RS22335 PF13358 DDE superfamily endonuclease JN439_RS22345 PF01389 OmpA-like transmembrane domain JN439_RS22345 PF00691 OmpA family JN439_RS22350 PF00291 Pyridoxal-phosphate dependent enzyme JN439_RS22350 PF00585 C-terminal regulatory domain of Threonine dehydratase JN439_RS22355 PF00920 Dehydratase family JN439_RS22360 PF01063 Amino-transferase class IV JN439_RS22370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JN439_RS22370 PF00205 Thiamine pyrophosphate enzyme, central domain JN439_RS22370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JN439_RS22375 PF01078 Magnesium chelatase, subunit ChlI JN439_RS22375 PF13335 Magnesium chelatase, subunit ChlI C-terminal JN439_RS22380 PF01553 Acyltransferase JN439_RS22385 PF01553 Acyltransferase JN439_RS22390 PF04463 Protein of unknown function (DUF523) JN439_RS22400 PF00857 Isochorismatase family JN439_RS22405 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JN439_RS22405 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JN439_RS22410 PF01323 DSBA-like thioredoxin domain JN439_RS22415 PF01636 Phosphotransferase enzyme family JN439_RS22420 PF12801 4Fe-4S binding domain JN439_RS22420 PF13746 4Fe-4S dicluster domain JN439_RS22420 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JN439_RS22425 PF06288 Protein of unknown function (DUF1040) JN439_RS22430 PF00360 Phytochrome region JN439_RS22430 PF00563 EAL domain JN439_RS22430 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS22430 PF01590 GAF domain JN439_RS22435 PF09278 MerR, DNA binding JN439_RS22435 PF00376 MerR family regulatory protein JN439_RS22440 PF00403 Heavy-metal-associated domain JN439_RS22445 PF00156 Phosphoribosyl transferase domain JN439_RS22450 PF03725 3' exoribonuclease family, domain 2 JN439_RS22450 PF01138 3' exoribonuclease family, domain 1 JN439_RS22455 PF08340 Domain of unknown function (DUF1732) JN439_RS22455 PF03755 YicC-like family, N-terminal region JN439_RS22465 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JN439_RS22470 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JN439_RS22475 PF00535 Glycosyl transferase family 2 JN439_RS22480 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JN439_RS22485 PF01467 Cytidylyltransferase-like JN439_RS22490 PF04393 Protein of unknown function (DUF535) JN439_RS22495 PF06827 Zinc finger found in FPG and IleRS JN439_RS22495 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JN439_RS22495 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JN439_RS22505 PF00471 Ribosomal protein L33 JN439_RS22510 PF00830 Ribosomal L28 family JN439_RS22515 PF04002 RadC-like JAB domain JN439_RS22520 PF02441 Flavoprotein JN439_RS22520 PF04127 DNA / pantothenate metabolism flavoprotein JN439_RS22525 PF00692 dUTPase JN439_RS22530 PF00440 Bacterial regulatory proteins, tetR family JN439_RS22540 PF00924 Mechanosensitive ion channel JN439_RS22540 PF05552 Conserved TM helix JN439_RS22550 PF00342 Phosphoglucose isomerase JN439_RS22555 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JN439_RS22555 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JN439_RS22560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN439_RS22560 PF03466 LysR substrate binding domain JN439_RS22570 PF13380 CoA binding domain JN439_RS22570 PF00583 Acetyltransferase (GNAT) family JN439_RS22570 PF13607 Succinyl-CoA ligase like flavodoxin domain JN439_RS22595 PF12724 Flavodoxin domain JN439_RS22600 PF02386 Cation transport protein JN439_RS22605 PF01205 Uncharacterized protein family UPF0029 JN439_RS22605 PF09186 Domain of unknown function (DUF1949) JN439_RS22610 PF00557 Metallopeptidase family M24 JN439_RS22615 PF13193 AMP-binding enzyme C-terminal domain JN439_RS22615 PF00501 AMP-binding enzyme JN439_RS22620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JN439_RS22620 PF00378 Enoyl-CoA hydratase/isomerase JN439_RS22620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JN439_RS22625 PF00108 Thiolase, N-terminal domain JN439_RS22625 PF02803 Thiolase, C-terminal domain JN439_RS22630 PF00486 Transcriptional regulatory protein, C terminal JN439_RS22630 PF00072 Response regulator receiver domain JN439_RS22635 PF00672 HAMP domain JN439_RS22635 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS22635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS22640 PF01547 Bacterial extracellular solute-binding protein JN439_RS22660 PF01206 Sulfurtransferase TusA JN439_RS22665 PF01042 Endoribonuclease L-PSP JN439_RS22685 PF00691 OmpA family JN439_RS22685 PF13488 Glycine zipper JN439_RS22695 PF00857 Isochorismatase family JN439_RS22700 PF03352 Methyladenine glycosylase JN439_RS22705 PF02091 Glycyl-tRNA synthetase alpha subunit JN439_RS22710 PF02092 Glycyl-tRNA synthetase beta subunit JN439_RS22710 PF05746 DALR anticodon binding domain JN439_RS22725 PF00360 Phytochrome region JN439_RS22725 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS22725 PF01590 GAF domain JN439_RS22725 PF00563 EAL domain JN439_RS22745 PF03222 Tryptophan/tyrosine permease family JN439_RS22750 PF03222 Tryptophan/tyrosine permease family JN439_RS22755 PF01212 Beta-eliminating lyase JN439_RS22765 PF12801 4Fe-4S binding domain JN439_RS22775 PF18113 Rubredoxin binding C-terminal domain JN439_RS22775 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN439_RS22780 PF00301 Rubredoxin JN439_RS22780 PF00753 Metallo-beta-lactamase superfamily JN439_RS22780 PF00258 Flavodoxin JN439_RS22785 PF01590 GAF domain JN439_RS22785 PF00158 Sigma-54 interaction domain JN439_RS22790 PF00356 Bacterial regulatory proteins, lacI family JN439_RS22795 PF13458 Periplasmic binding protein JN439_RS22800 PF02653 Branched-chain amino acid transport system / permease component JN439_RS22805 PF11862 Domain of unknown function (DUF3382) JN439_RS22805 PF02653 Branched-chain amino acid transport system / permease component JN439_RS22810 PF12399 Branched-chain amino acid ATP-binding cassette transporter JN439_RS22810 PF00005 ABC transporter JN439_RS22815 PF00005 ABC transporter JN439_RS22825 PF01810 LysE type translocator JN439_RS22830 PF00581 Rhodanese-like domain JN439_RS22835 PF01694 Rhomboid family JN439_RS22835 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JN439_RS22845 PF12262 Bacterial virulence factor lipase N-terminal JN439_RS22850 PF04380 Membrane fusogenic activity JN439_RS22855 PF00175 Oxidoreductase NAD-binding domain JN439_RS22860 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JN439_RS22870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN439_RS22870 PF07498 Rho termination factor, N-terminal domain JN439_RS22870 PF07497 Rho termination factor, RNA-binding domain JN439_RS22875 PF00085 Thioredoxin JN439_RS22880 PF00271 Helicase conserved C-terminal domain JN439_RS22880 PF00270 DEAD/DEAH box helicase JN439_RS22885 PF02541 Ppx/GppA phosphatase family JN439_RS22895 PF04445 Putative SAM-dependent methyltransferase JN439_RS22900 PF03707 Bacterial signalling protein N terminal repeat JN439_RS22900 PF00990 Diguanylate cyclase, GGDEF domain JN439_RS22900 PF00563 EAL domain JN439_RS22905 PF01432 Peptidase family M3 JN439_RS22910 PF00490 Delta-aminolevulinic acid dehydratase JN439_RS22915 PF01026 TatD related DNase JN439_RS22920 PF00902 Sec-independent protein translocase protein (TatC) JN439_RS22925 PF02416 mttA/Hcf106 family JN439_RS22930 PF02416 mttA/Hcf106 family JN439_RS22935 PF03109 ABC1 family JN439_RS22940 PF02036 SCP-2 sterol transfer family JN439_RS22945 PF01209 ubiE/COQ5 methyltransferase family JN439_RS22950 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JN439_RS22955 PF07969 Amidohydrolase family JN439_RS22995 PF03544 Gram-negative bacterial TonB protein C-terminal JN439_RS23000 PF02472 Biopolymer transport protein ExbD/TolR JN439_RS23005 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS23010 PF01618 MotA/TolQ/ExbB proton channel family JN439_RS23020 PF03472 Autoinducer binding domain JN439_RS23020 PF00196 Bacterial regulatory proteins, luxR family JN439_RS23070 PF01434 Peptidase family M41 JN439_RS23070 PF17862 AAA+ lid domain JN439_RS23070 PF00004 ATPase family associated with various cellular activities (AAA) JN439_RS23070 PF06480 FtsH Extracellular JN439_RS23075 PF00012 Hsp70 protein JN439_RS23095 PF06527 TniQ JN439_RS23095 PF15978 Tn7-like transposition protein D JN439_RS23100 PF11426 Tn7 transposition regulator TnsC JN439_RS23100 PF13401 AAA domain JN439_RS23105 PF00665 Integrase core domain JN439_RS23110 PF08721 TnsA endonuclease C terminal JN439_RS23110 PF08722 TnsA endonuclease N terminal JN439_RS23115 PF01380 SIS domain JN439_RS23120 PF00455 DeoR C terminal sensor domain JN439_RS23120 PF08220 DeoR-like helix-turn-helix domain JN439_RS23125 PF00072 Response regulator receiver domain JN439_RS23125 PF00486 Transcriptional regulatory protein, C terminal JN439_RS23130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN439_RS23130 PF00512 His Kinase A (phospho-acceptor) domain JN439_RS23130 PF00672 HAMP domain JN439_RS23135 PF00905 Penicillin binding protein transpeptidase domain JN439_RS23140 PF06123 Inner membrane protein CreD JN439_RS23145 PF12804 MobA-like NTP transferase domain JN439_RS23145 PF14602 Hexapeptide repeat of succinyl-transferase JN439_RS23145 PF00132 Bacterial transferase hexapeptide (six repeats) JN439_RS23150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JN439_RS23150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JN439_RS23155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN439_RS23155 PF02874 ATP synthase alpha/beta family, beta-barrel domain JN439_RS23160 PF00231 ATP synthase JN439_RS23165 PF02874 ATP synthase alpha/beta family, beta-barrel domain JN439_RS23165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN439_RS23165 PF00306 ATP synthase alpha/beta chain, C terminal domain JN439_RS23170 PF00213 ATP synthase delta (OSCP) subunit JN439_RS23175 PF00430 ATP synthase B/B' CF(0) JN439_RS23180 PF00137 ATP synthase subunit C JN439_RS23185 PF00119 ATP synthase A chain JN439_RS23195 PF02195 ParB-like nuclease domain JN439_RS23195 PF17762 HTH domain found in ParB protein JN439_RS23200 PF13614 AAA domain JN439_RS23205 PF02527 rRNA small subunit methyltransferase G JN439_RS23210 PF13932 GidA associated domain JN439_RS23210 PF01134 Glucose inhibited division protein A JN439_RS23215 PF00258 Flavodoxin JN439_RS23220 PF00593 TonB dependent receptor JN439_RS23220 PF07715 TonB-dependent Receptor Plug Domain JN439_RS23225 PF00005 ABC transporter JN439_RS23230 PF00005 ABC transporter JN439_RS23235 PF01497 Periplasmic binding protein JN439_RS23240 PF01032 FecCD transport family JN439_RS23245 PF07804 HipA-like C-terminal domain JN439_RS23245 PF13657 HipA N-terminal domain JN439_RS23270 PF10396 GTP-binding protein TrmE N-terminus JN439_RS23270 PF12631 MnmE helical domain JN439_RS23270 PF01926 50S ribosome-binding GTPase JN439_RS23275 PF02096 60Kd inner membrane protein JN439_RS23275 PF14849 YidC periplasmic domain JN439_RS23280 PF01809 Putative membrane protein insertion efficiency factor JN439_RS23285 PF00825 Ribonuclease P JN439_RS23290 PF00468 Ribosomal protein L34 JN439_RS23295 PF00005 ABC transporter JN439_RS23300 PF00528 Binding-protein-dependent transport system inner membrane component JN439_RS23305 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN439_RS23310 PF01051 Initiator Replication protein JN439_RS23325 PF13614 AAA domain JN439_RS23335 PF00929 Exonuclease JN439_RS23360 PF00186 Dihydrofolate reductase JN439_RS23365 PF00303 Thymidylate synthase JN439_RS23385 PF00317 Ribonucleotide reductase, all-alpha domain JN439_RS23385 PF02867 Ribonucleotide reductase, barrel domain JN439_RS23385 PF03477 ATP cone domain JN439_RS23405 PF13476 AAA domain JN439_RS23430 PF07804 HipA-like C-terminal domain JN439_RS23520 PF00216 Bacterial DNA-binding protein JN439_RS23540 PF00154 recA bacterial DNA recombination protein JN439_RS23550 PF01367 5'-3' exonuclease, C-terminal SAM fold JN439_RS23550 PF00476 DNA polymerase family A JN439_RS23550 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JN439_RS23580 PF14579 Helix-hairpin-helix motif JN439_RS23580 PF02811 PHP domain JN439_RS23580 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JN439_RS23580 PF07733 Bacterial DNA polymerase III alpha NTPase domain JN439_RS23590 PF02811 PHP domain JN439_RS23590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JN439_RS23590 PF07733 Bacterial DNA polymerase III alpha NTPase domain JN439_RS23590 PF14579 Helix-hairpin-helix motif JN439_RS23605 PF06213 Cobalamin biosynthesis protein CobT JN439_RS23605 PF11775 Cobalamin biosynthesis protein CobT VWA domain JN439_RS23620 PF13614 AAA domain JN439_RS23650 PF08275 DNA primase catalytic core, N-terminal domain JN439_RS23650 PF08278 DNA primase DnaG DnaB-binding JN439_RS23650 PF01807 CHC2 zinc finger JN439_RS23650 PF10410 DnaB-helicase binding domain of primase JN439_RS23670 PF17209 Hfq protein JN439_RS23695 PF08400 Prophage tail fibre N-terminal JN439_RS23695 PF07484 Phage Tail Collar Domain JN439_RS23695 PF03335 Phage tail fibre repeat JN439_RS23825 PF00005 ABC transporter JN439_RS23825 PF09383 NIL domain JN439_RS23845 PF17757 UvrB interaction domain JN439_RS23845 PF02151 UvrB/uvrC motif JN439_RS23845 PF04851 Type III restriction enzyme, res subunit JN439_RS23845 PF12344 Ultra-violet resistance protein B JN439_RS23845 PF00271 Helicase conserved C-terminal domain JN439_RS23880 PF01609 Transposase DDE domain JN439_RS23880 PF05598 Transposase domain (DUF772) JN439_RS23895 PF13542 Helix-turn-helix domain of transposase family ISL3 JN439_RS23895 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JN439_RS23895 PF01610 Transposase JN439_RS23900 PF02899 Phage integrase, N-terminal SAM-like domain JN439_RS23900 PF00589 Phage integrase family JN439_RS23965 PF07042 TrfA protein JN439_RS23975 PF03230 Antirestriction protein JN439_RS23990 PF17394 Uncharacterized KleE stable inheritance protein JN439_RS23995 PF16509 TrfB plasmid transcriptional repressor JN439_RS24000 PF13614 AAA domain JN439_RS24005 PF06613 KorB C-terminal beta-barrel domain JN439_RS24005 PF02195 ParB-like nuclease domain JN439_RS24005 PF08535 KorB domain JN439_RS24035 PF11657 Transcriptional activator TraM JN439_RS24045 PF17273 Family of unknown function (DUF5338) JN439_RS24055 PF18821 Large polyvalent protein-associated domain 7 JN439_RS24055 PF03432 Relaxase/Mobilisation nuclease domain JN439_RS24060 PF02534 Type IV secretory system Conjugative DNA transfer JN439_RS24065 PF10502 Signal peptidase, peptidase S26 JN439_RS24070 PF01751 Toprim domain JN439_RS24070 PF01131 DNA topoisomerase JN439_RS24080 PF08401 Domain of unknown function (DUF1738) JN439_RS24080 PF18818 Metallopeptidase superfamily domain JN439_RS24080 PF13362 Toprim domain JN439_RS24085 PF00239 Resolvase, N terminal domain JN439_RS24085 PF02796 Helix-turn-helix domain of resolvase JN439_RS24095 PF00589 Phage integrase family JN439_RS24095 PF13495 Phage integrase, N-terminal SAM-like domain JN439_RS24125 PF02796 Helix-turn-helix domain of resolvase JN439_RS24125 PF00239 Resolvase, N terminal domain JN439_RS24180 PF03743 Bacterial conjugation TrbI-like protein JN439_RS24190 PF03524 Conjugal transfer protein JN439_RS24200 PF03135 CagE, TrbE, VirB family, component of type IV transporter system JN439_RS24210 PF04956 TrbC/VIRB2 family JN439_RS24215 PF00437 Type II/IV secretion system protein JN439_RS24220 PF16509 TrfB plasmid transcriptional repressor JN439_RS24230 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ JN439_RS24235 PF02796 Helix-turn-helix domain of resolvase JN439_RS24235 PF00239 Resolvase, N terminal domain JN439_RS24250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN439_RS24280 PF13614 AAA domain JN439_RS24290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS24290 PF08447 PAS fold JN439_RS24295 PF13614 AAA domain JN439_RS24305 PF13614 AAA domain JN439_RS24340 PF00929 Exonuclease JN439_RS24355 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JN439_RS24370 PF03432 Relaxase/Mobilisation nuclease domain JN439_RS24385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN439_RS24385 PF02743 Cache domain JN439_RS24385 PF00672 HAMP domain JN439_RS24410 PF05713 Bacterial mobilisation protein (MobC)