locus-tag class description RIMD111065_RS00005 PF11638 DnaA N-terminal domain RIMD111065_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix RIMD111065_RS00005 PF00308 Bacterial dnaA protein RIMD111065_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RIMD111065_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RIMD111065_RS00010 PF02767 DNA polymerase III beta subunit, central domain RIMD111065_RS00015 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS00020 PF18053 DNA gyrase B subunit insert domain RIMD111065_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus RIMD111065_RS00020 PF00204 DNA gyrase B RIMD111065_RS00020 PF01751 Toprim domain RIMD111065_RS00075 PF13280 WYL domain RIMD111065_RS00075 PF08279 HTH domain RIMD111065_RS00080 PF00011 Hsp20/alpha crystallin family RIMD111065_RS00085 PF00011 Hsp20/alpha crystallin family RIMD111065_RS00090 PF00155 Aminotransferase class I and II RIMD111065_RS00105 PF07690 Major Facilitator Superfamily RIMD111065_RS00110 PF00072 Response regulator receiver domain RIMD111065_RS00110 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS00115 PF13493 Domain of unknown function (DUF4118) RIMD111065_RS00115 PF13492 GAF domain RIMD111065_RS00115 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS00115 PF02702 Osmosensitive K+ channel His kinase sensor domain RIMD111065_RS00120 PF02669 K+-transporting ATPase, c chain RIMD111065_RS00130 PF03814 Potassium-transporting ATPase A subunit RIMD111065_RS00135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_RS00135 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS00140 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS00140 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS00140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS00145 PF00873 AcrB/AcrD/AcrF family RIMD111065_RS00150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS00155 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS00185 PF00224 Pyruvate kinase, barrel domain RIMD111065_RS00185 PF02887 Pyruvate kinase, alpha/beta domain RIMD111065_RS00190 PF07690 Major Facilitator Superfamily RIMD111065_RS00200 PF00672 HAMP domain RIMD111065_RS00200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS00200 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS00205 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS00205 PF00072 Response regulator receiver domain RIMD111065_RS00205 PF14532 Sigma-54 interaction domain RIMD111065_RS00220 PF12146 Serine aminopeptidase, S33 RIMD111065_RS00225 PF00588 SpoU rRNA Methylase family RIMD111065_RS00225 PF12105 SpoU, rRNA methylase, C-terminal RIMD111065_RS00230 PF02824 TGS domain RIMD111065_RS00230 PF04607 Region found in RelA / SpoT proteins RIMD111065_RS00230 PF13291 ACT domain RIMD111065_RS00235 PF01192 RNA polymerase Rpb6 RIMD111065_RS00240 PF00625 Guanylate kinase RIMD111065_RS00245 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RIMD111065_RS00260 PF00892 EamA-like transporter family RIMD111065_RS00280 PF03466 LysR substrate binding domain RIMD111065_RS00280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS00285 PF00579 tRNA synthetases class I (W and Y) RIMD111065_RS00290 PF00582 Universal stress protein family RIMD111065_RS00295 PF12241 Trans-2-enoyl-CoA reductase catalytic region RIMD111065_RS00295 PF07055 Enoyl reductase FAD binding domain RIMD111065_RS00295 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RIMD111065_RS00300 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS00305 PF00210 Ferritin-like domain RIMD111065_RS00315 PF07690 Major Facilitator Superfamily RIMD111065_RS00320 PF01810 LysE type translocator RIMD111065_RS00335 PF16967 E-set like domain RIMD111065_RS00335 PF15976 CS1-pili formation C-terminal RIMD111065_RS00340 PF18649 EcpB C-terminal domain RIMD111065_RS00345 PF16449 Fimbrillin MatB RIMD111065_RS00350 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS00350 PF00072 Response regulator receiver domain RIMD111065_RS00355 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS00355 PF00072 Response regulator receiver domain RIMD111065_RS00355 PF01627 Hpt domain RIMD111065_RS00355 PF00989 PAS fold RIMD111065_RS00355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS00355 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS00365 PF07694 5TMR of 5TMR-LYT RIMD111065_RS00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS00365 PF06580 Histidine kinase RIMD111065_RS00370 PF04397 LytTr DNA-binding domain RIMD111065_RS00370 PF00072 Response regulator receiver domain RIMD111065_RS00375 PF07690 Major Facilitator Superfamily RIMD111065_RS00380 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RIMD111065_RS00380 PF02222 ATP-grasp domain RIMD111065_RS00385 PF00731 AIR carboxylase RIMD111065_RS00400 PF03466 LysR substrate binding domain RIMD111065_RS00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS00405 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS00405 PF00593 TonB dependent receptor RIMD111065_RS00410 PF01177 Asp/Glu/Hydantoin racemase RIMD111065_RS00450 PF00899 ThiF family RIMD111065_RS00455 PF02657 Fe-S metabolism associated domain RIMD111065_RS00460 PF00266 Aminotransferase class-V RIMD111065_RS00465 PF00580 UvrD/REP helicase N-terminal domain RIMD111065_RS00465 PF13361 UvrD-like helicase C-terminal domain RIMD111065_RS00470 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS00470 PF00563 EAL domain RIMD111065_RS00470 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS00475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RIMD111065_RS00480 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_RS00480 PF00107 Zinc-binding dehydrogenase RIMD111065_RS00485 PF00155 Aminotransferase class I and II RIMD111065_RS00490 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS00490 PF08360 QacR-like protein, C-terminal region RIMD111065_RS00495 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS00510 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) RIMD111065_RS00530 PF03755 YicC-like family, N-terminal region RIMD111065_RS00530 PF08340 Domain of unknown function (DUF1732) RIMD111065_RS00535 PF03725 3' exoribonuclease family, domain 2 RIMD111065_RS00535 PF01138 3' exoribonuclease family, domain 1 RIMD111065_RS00540 PF00156 Phosphoribosyl transferase domain RIMD111065_RS00545 PF00403 Heavy-metal-associated domain RIMD111065_RS00550 PF00376 MerR family regulatory protein RIMD111065_RS00550 PF09278 MerR, DNA binding RIMD111065_RS00555 PF01590 GAF domain RIMD111065_RS00555 PF00360 Phytochrome region RIMD111065_RS00555 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS00555 PF00563 EAL domain RIMD111065_RS00560 PF06288 Protein of unknown function (DUF1040) RIMD111065_RS00565 PF12801 4Fe-4S binding domain RIMD111065_RS00565 PF13746 4Fe-4S dicluster domain RIMD111065_RS00565 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RIMD111065_RS00570 PF01636 Phosphotransferase enzyme family RIMD111065_RS00575 PF01323 DSBA-like thioredoxin domain RIMD111065_RS00580 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS00585 PF00005 ABC transporter RIMD111065_RS00595 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RIMD111065_RS00595 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RIMD111065_RS00600 PF00857 Isochorismatase family RIMD111065_RS00610 PF04463 Protein of unknown function (DUF523) RIMD111065_RS00615 PF01553 Acyltransferase RIMD111065_RS00620 PF01553 Acyltransferase RIMD111065_RS00625 PF01078 Magnesium chelatase, subunit ChlI RIMD111065_RS00625 PF13335 Magnesium chelatase, subunit ChlI C-terminal RIMD111065_RS00630 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_RS00630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_RS00630 PF00205 Thiamine pyrophosphate enzyme, central domain RIMD111065_RS00640 PF01063 Amino-transferase class IV RIMD111065_RS00645 PF00920 Dehydratase family RIMD111065_RS00650 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS00650 PF00585 C-terminal regulatory domain of Threonine dehydratase RIMD111065_RS00655 PF01389 OmpA-like transmembrane domain RIMD111065_RS00655 PF00691 OmpA family RIMD111065_RS00665 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RIMD111065_RS00665 PF00270 DEAD/DEAH box helicase RIMD111065_RS00665 PF00271 Helicase conserved C-terminal domain RIMD111065_RS00665 PF17764 3′ DNA-binding domain (3′BD) RIMD111065_RS00665 PF18074 Primosomal protein N C-terminal domain RIMD111065_RS00670 PF01197 Ribosomal protein L31 RIMD111065_RS00675 PF11066 Protein of unknown function (DUF2867) RIMD111065_RS00675 PF13460 NAD(P)H-binding RIMD111065_RS00680 PF03949 Malic enzyme, NAD binding domain RIMD111065_RS00680 PF00390 Malic enzyme, N-terminal domain RIMD111065_RS00690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS00690 PF00672 HAMP domain RIMD111065_RS00690 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS00695 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS00695 PF00072 Response regulator receiver domain RIMD111065_RS00700 PF05958 tRNA (Uracil-5-)-methyltransferase RIMD111065_RS00715 PF02903 Alpha amylase, N-terminal ig-like domain RIMD111065_RS00715 PF00128 Alpha amylase, catalytic domain RIMD111065_RS00730 PF00012 Hsp70 protein RIMD111065_RS00735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_RS00735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_RS00740 PF05981 CreA protein RIMD111065_RS00755 PF01258 Prokaryotic dksA/traR C4-type zinc finger RIMD111065_RS00760 PF00120 Glutamine synthetase, catalytic domain RIMD111065_RS00765 PF00202 Aminotransferase class-III RIMD111065_RS00770 PF13416 Bacterial extracellular solute-binding protein RIMD111065_RS00775 PF13416 Bacterial extracellular solute-binding protein RIMD111065_RS00780 PF08402 TOBE domain RIMD111065_RS00780 PF00005 ABC transporter RIMD111065_RS00785 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS00790 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS00795 PF03473 MOSC domain RIMD111065_RS00795 PF03475 3-alpha domain RIMD111065_RS00810 PF03061 Thioesterase superfamily RIMD111065_RS00815 PF00271 Helicase conserved C-terminal domain RIMD111065_RS00815 PF00270 DEAD/DEAH box helicase RIMD111065_RS00815 PF09382 RQC domain RIMD111065_RS00815 PF16124 RecQ zinc-binding RIMD111065_RS00815 PF00570 HRDC domain RIMD111065_RS00820 PF00034 Cytochrome c RIMD111065_RS00825 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RIMD111065_RS00835 PF02592 Putative vitamin uptake transporter RIMD111065_RS00840 PF03737 Aldolase/RraA RIMD111065_RS00845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS00845 PF00672 HAMP domain RIMD111065_RS00850 PF00571 CBS domain RIMD111065_RS00850 PF03448 MgtE intracellular N domain RIMD111065_RS00850 PF01769 Divalent cation transporter RIMD111065_RS00855 PF14824 Sirohaem biosynthesis protein central RIMD111065_RS00855 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_RS00855 PF10414 Sirohaem synthase dimerisation region RIMD111065_RS00860 PF01226 Formate/nitrite transporter RIMD111065_RS00865 PF13806 Rieske-like [2Fe-2S] domain RIMD111065_RS00870 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS00870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_RS00870 PF18267 Rubredoxin NAD+ reductase C-terminal domain RIMD111065_RS00870 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_RS00870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_RS00875 PF03466 LysR substrate binding domain RIMD111065_RS00875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS00880 PF07690 Major Facilitator Superfamily RIMD111065_RS00885 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_RS00885 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_RS00885 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS00890 PF00227 Proteasome subunit RIMD111065_RS00900 PF00750 tRNA synthetases class I (R) RIMD111065_RS00900 PF05746 DALR anticodon binding domain RIMD111065_RS00900 PF03485 Arginyl tRNA synthetase N terminal domain RIMD111065_RS00910 PF04545 Sigma-70, region 4 RIMD111065_RS00910 PF04542 Sigma-70 region 2 RIMD111065_RS00915 PF12973 ChrR Cupin-like domain RIMD111065_RS00920 PF02673 Bacitracin resistance protein BacA RIMD111065_RS00925 PF00248 Aldo/keto reductase family RIMD111065_RS00930 PF01263 Aldose 1-epimerase RIMD111065_RS00935 PF00288 GHMP kinases N terminal domain RIMD111065_RS00935 PF08544 GHMP kinases C terminal RIMD111065_RS00935 PF10509 Galactokinase galactose-binding signature RIMD111065_RS00940 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RIMD111065_RS00940 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RIMD111065_RS00945 PF16363 GDP-mannose 4,6 dehydratase RIMD111065_RS00950 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS00955 PF02837 Glycosyl hydrolases family 2, sugar binding domain RIMD111065_RS00955 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RIMD111065_RS00955 PF00703 Glycosyl hydrolases family 2 RIMD111065_RS00955 PF16353 Domain of unknown function(DUF4981) RIMD111065_RS00955 PF02929 Beta galactosidase small chain RIMD111065_RS00960 PF13407 Periplasmic binding protein domain RIMD111065_RS00965 PF00005 ABC transporter RIMD111065_RS00970 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_RS00975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS00975 PF02743 Cache domain RIMD111065_RS00975 PF00672 HAMP domain RIMD111065_RS01000 PF00696 Amino acid kinase family RIMD111065_RS01005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_RS01005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_RS01010 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_RS01015 PF01316 Arginine repressor, DNA binding domain RIMD111065_RS01015 PF02863 Arginine repressor, C-terminal domain RIMD111065_RS01020 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain RIMD111065_RS01020 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain RIMD111065_RS01025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_RS01025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_RS01045 PF02666 Phosphatidylserine decarboxylase RIMD111065_RS01050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS01050 PF00672 HAMP domain RIMD111065_RS01050 PF02743 Cache domain RIMD111065_RS01055 PF08212 Lipocalin-like domain RIMD111065_RS01060 PF06719 AraC-type transcriptional regulator N-terminus RIMD111065_RS01060 PF12833 Helix-turn-helix domain RIMD111065_RS01065 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS01070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RIMD111065_RS01070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RIMD111065_RS01070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RIMD111065_RS01075 PF02233 NAD(P) transhydrogenase beta subunit RIMD111065_RS01085 PF03313 Serine dehydratase alpha chain RIMD111065_RS01090 PF00375 Sodium:dicarboxylate symporter family RIMD111065_RS01095 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS01095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_RS01100 PF13525 Outer membrane lipoprotein RIMD111065_RS01105 PF01479 S4 domain RIMD111065_RS01105 PF00849 RNA pseudouridylate synthase RIMD111065_RS01110 PF02578 Multi-copper polyphenol oxidoreductase laccase RIMD111065_RS01115 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_RS01115 PF02861 Clp amino terminal domain, pathogenicity island component RIMD111065_RS01115 PF17871 AAA lid domain RIMD111065_RS01115 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS01115 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_RS01125 PF03590 Aspartate-ammonia ligase RIMD111065_RS01130 PF01037 Lrp/AsnC ligand binding domain RIMD111065_RS01140 PF10063 Uncharacterized integral membrane protein (DUF2301) RIMD111065_RS01145 PF00571 CBS domain RIMD111065_RS01145 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_RS01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS01165 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS01175 PF00072 Response regulator receiver domain RIMD111065_RS01175 PF00158 Sigma-54 interaction domain RIMD111065_RS01180 PF06496 Protein of unknown function (DUF1097) RIMD111065_RS01185 PF00174 Oxidoreductase molybdopterin binding domain RIMD111065_RS01190 PF01794 Ferric reductase like transmembrane component RIMD111065_RS01205 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS01205 PF00072 Response regulator receiver domain RIMD111065_RS01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS01220 PF01568 Molydopterin dinucleotide binding domain RIMD111065_RS01220 PF18364 Molybdopterin oxidoreductase N-terminal domain RIMD111065_RS01220 PF00384 Molybdopterin oxidoreductase RIMD111065_RS01225 PF03264 NapC/NirT cytochrome c family, N-terminal region RIMD111065_RS01230 PF01131 DNA topoisomerase RIMD111065_RS01230 PF01751 Toprim domain RIMD111065_RS01245 PF12833 Helix-turn-helix domain RIMD111065_RS01245 PF12852 Cupin RIMD111065_RS01250 PF02386 Cation transport protein RIMD111065_RS01255 PF02254 TrkA-N domain RIMD111065_RS01255 PF02080 TrkA-C domain RIMD111065_RS01260 PF01565 FAD binding domain RIMD111065_RS01260 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RIMD111065_RS01265 PF08279 HTH domain RIMD111065_RS01265 PF03099 Biotin/lipoate A/B protein ligase family RIMD111065_RS01265 PF02237 Biotin protein ligase C terminal domain RIMD111065_RS01270 PF00485 Phosphoribulokinase / Uridine kinase family RIMD111065_RS01285 PF03144 Elongation factor Tu domain 2 RIMD111065_RS01285 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS01285 PF03143 Elongation factor Tu C-terminal domain RIMD111065_RS01295 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RIMD111065_RS01300 PF00467 KOW motif RIMD111065_RS01300 PF02357 Transcription termination factor nusG RIMD111065_RS01305 PF00298 Ribosomal protein L11, RNA binding domain RIMD111065_RS01305 PF03946 Ribosomal protein L11, N-terminal domain RIMD111065_RS01310 PF00687 Ribosomal protein L1p/L10e family RIMD111065_RS01315 PF00466 Ribosomal protein L10 RIMD111065_RS01320 PF00542 Ribosomal protein L7/L12 C-terminal domain RIMD111065_RS01320 PF16320 Ribosomal protein L7/L12 dimerisation domain RIMD111065_RS01325 PF04565 RNA polymerase Rpb2, domain 3 RIMD111065_RS01325 PF04560 RNA polymerase Rpb2, domain 7 RIMD111065_RS01325 PF04563 RNA polymerase beta subunit RIMD111065_RS01325 PF00562 RNA polymerase Rpb2, domain 6 RIMD111065_RS01325 PF04561 RNA polymerase Rpb2, domain 2 RIMD111065_RS01325 PF10385 RNA polymerase beta subunit external 1 domain RIMD111065_RS01330 PF04983 RNA polymerase Rpb1, domain 3 RIMD111065_RS01330 PF00623 RNA polymerase Rpb1, domain 2 RIMD111065_RS01330 PF04997 RNA polymerase Rpb1, domain 1 RIMD111065_RS01330 PF05000 RNA polymerase Rpb1, domain 4 RIMD111065_RS01330 PF04998 RNA polymerase Rpb1, domain 5 RIMD111065_RS01335 PF13309 HTH domain RIMD111065_RS01335 PF08348 YheO-like PAS domain RIMD111065_RS01340 PF01042 Endoribonuclease L-PSP RIMD111065_RS01345 PF02635 DsrE/DsrF-like family RIMD111065_RS01350 PF02635 DsrE/DsrF-like family RIMD111065_RS01355 PF04077 DsrH like protein RIMD111065_RS01360 PF00164 Ribosomal protein S12/S23 RIMD111065_RS01365 PF00177 Ribosomal protein S7p/S5e RIMD111065_RS01370 PF03144 Elongation factor Tu domain 2 RIMD111065_RS01370 PF00679 Elongation factor G C-terminus RIMD111065_RS01370 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS01370 PF03764 Elongation factor G, domain IV RIMD111065_RS01370 PF14492 Elongation Factor G, domain II RIMD111065_RS01375 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS01375 PF03144 Elongation factor Tu domain 2 RIMD111065_RS01375 PF03143 Elongation factor Tu C-terminal domain RIMD111065_RS01415 PF00860 Permease family RIMD111065_RS01420 PF02733 Dak1 domain RIMD111065_RS01425 PF02734 DAK2 domain RIMD111065_RS01430 PF03610 PTS system fructose IIA component RIMD111065_RS01430 PF00381 PTS HPr component phosphorylation site RIMD111065_RS01430 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_RS01430 PF05524 PEP-utilising enzyme, N-terminal RIMD111065_RS01435 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS01440 PF00989 PAS fold RIMD111065_RS01440 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS01440 PF00158 Sigma-54 interaction domain RIMD111065_RS01445 PF03466 LysR substrate binding domain RIMD111065_RS01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS01450 PF04371 Porphyromonas-type peptidyl-arginine deiminase RIMD111065_RS01460 PF01594 AI-2E family transporter RIMD111065_RS01465 PF00293 NUDIX domain RIMD111065_RS01490 PF00199 Catalase RIMD111065_RS01490 PF06628 Catalase-related immune-responsive RIMD111065_RS01495 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS01515 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS01525 PF00005 ABC transporter RIMD111065_RS01525 PF08402 TOBE domain RIMD111065_RS01535 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS01550 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS01550 PF07702 UTRA domain RIMD111065_RS01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS01560 PF03466 LysR substrate binding domain RIMD111065_RS01570 PF02678 Pirin RIMD111065_RS01570 PF17954 Quercetinase C-terminal cupin domain RIMD111065_RS01575 PF07681 DoxX RIMD111065_RS01580 PF17946 RecC C-terminal domain RIMD111065_RS01585 PF12705 PD-(D/E)XK nuclease superfamily RIMD111065_RS01585 PF13361 UvrD-like helicase C-terminal domain RIMD111065_RS01585 PF00580 UvrD/REP helicase N-terminal domain RIMD111065_RS01590 PF13538 UvrD-like helicase C-terminal domain RIMD111065_RS01600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS01610 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS01640 PF00072 Response regulator receiver domain RIMD111065_RS01640 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS01645 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS01645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS01645 PF00672 HAMP domain RIMD111065_RS01650 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS01655 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS01655 PF00593 TonB dependent receptor RIMD111065_RS01660 PF00313 'Cold-shock' DNA-binding domain RIMD111065_RS01670 PF16916 Dimerisation domain of Zinc Transporter RIMD111065_RS01670 PF01545 Cation efflux family RIMD111065_RS01680 PF00436 Single-strand binding protein family RIMD111065_RS01685 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS01690 PF17760 UvrA interaction domain RIMD111065_RS01690 PF17755 UvrA DNA-binding domain RIMD111065_RS01690 PF00005 ABC transporter RIMD111065_RS01695 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS01700 PF03922 OmpW family RIMD111065_RS01705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS01705 PF00672 HAMP domain RIMD111065_RS01720 PF02219 Methylenetetrahydrofolate reductase RIMD111065_RS01730 PF03594 Benzoate membrane transport protein RIMD111065_RS01735 PF01381 Helix-turn-helix RIMD111065_RS01735 PF07883 Cupin domain RIMD111065_RS01765 PF04363 Protein of unknown function (DUF496) RIMD111065_RS01775 PF04751 Protein of unknown function (DUF615) RIMD111065_RS01780 PF01523 Putative modulator of DNA gyrase RIMD111065_RS01785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RIMD111065_RS01790 PF01722 BolA-like protein RIMD111065_RS01800 PF05494 MlaC protein RIMD111065_RS01805 PF02470 MlaD protein RIMD111065_RS01810 PF02405 Permease MlaE RIMD111065_RS01815 PF00005 ABC transporter RIMD111065_RS01820 PF01380 SIS domain RIMD111065_RS01820 PF00571 CBS domain RIMD111065_RS01830 PF06835 Lipopolysaccharide-assembly, LptC-related RIMD111065_RS01835 PF03968 OstA-like protein RIMD111065_RS01840 PF00005 ABC transporter RIMD111065_RS01840 PF12399 Branched-chain amino acid ATP-binding cassette transporter RIMD111065_RS01845 PF04552 Sigma-54, DNA binding domain RIMD111065_RS01845 PF00309 Sigma-54 factor, Activator interacting domain (AID) RIMD111065_RS01845 PF04963 Sigma-54 factor, core binding domain RIMD111065_RS01850 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RIMD111065_RS01855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_RS01860 PF03668 P-loop ATPase protein family RIMD111065_RS01865 PF00381 PTS HPr component phosphorylation site RIMD111065_RS01870 PF05043 Mga helix-turn-helix domain RIMD111065_RS01870 PF00874 PRD domain RIMD111065_RS01870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_RS01870 PF08279 HTH domain RIMD111065_RS01875 PF07071 KDGP aldolase RIMD111065_RS01880 PF03841 L-seryl-tRNA selenium transferase RIMD111065_RS01885 PF01979 Amidohydrolase family RIMD111065_RS01915 PF13180 PDZ domain RIMD111065_RS01920 PF00595 PDZ domain RIMD111065_RS01920 PF13180 PDZ domain RIMD111065_RS01930 PF03969 AFG1-like ATPase RIMD111065_RS01935 PF00572 Ribosomal protein L13 RIMD111065_RS01940 PF00380 Ribosomal protein S9/S16 RIMD111065_RS01945 PF00355 Rieske [2Fe-2S] domain RIMD111065_RS01945 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RIMD111065_RS01950 PF00033 Cytochrome b/b6/petB RIMD111065_RS01950 PF00032 Cytochrome b(C-terminal)/b6/petD RIMD111065_RS01955 PF02167 Cytochrome C1 family RIMD111065_RS01960 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_RS01960 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_RS01965 PF04386 Stringent starvation protein B RIMD111065_RS01970 PF04972 BON domain RIMD111065_RS01975 PF13580 SIS domain RIMD111065_RS01980 PF02021 Uncharacterised protein family UPF0102 RIMD111065_RS01985 PF04348 LppC putative lipoprotein RIMD111065_RS01990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_RS02000 PF02381 MraZ protein, putative antitoxin-like RIMD111065_RS02005 PF01795 MraW methylase family RIMD111065_RS02010 PF04999 Cell division protein FtsL RIMD111065_RS02015 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_RS02015 PF03717 Penicillin-binding Protein dimerisation domain RIMD111065_RS02020 PF08245 Mur ligase middle domain RIMD111065_RS02020 PF01225 Mur ligase family, catalytic domain RIMD111065_RS02020 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_RS02025 PF01225 Mur ligase family, catalytic domain RIMD111065_RS02025 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_RS02025 PF08245 Mur ligase middle domain RIMD111065_RS02030 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RIMD111065_RS02030 PF00953 Glycosyl transferase family 4 RIMD111065_RS02035 PF08245 Mur ligase middle domain RIMD111065_RS02035 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_RS02040 PF01098 Cell cycle protein RIMD111065_RS02045 PF04101 Glycosyltransferase family 28 C-terminal domain RIMD111065_RS02045 PF03033 Glycosyltransferase family 28 N-terminal domain RIMD111065_RS02050 PF01225 Mur ligase family, catalytic domain RIMD111065_RS02050 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_RS02050 PF08245 Mur ligase middle domain RIMD111065_RS02055 PF08478 POTRA domain, FtsQ-type RIMD111065_RS02055 PF03799 Cell division protein FtsQ RIMD111065_RS02060 PF02491 SHS2 domain inserted in FTSA RIMD111065_RS02065 PF12327 FtsZ family, C-terminal domain RIMD111065_RS02065 PF00091 Tubulin/FtsZ family, GTPase domain RIMD111065_RS02070 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RIMD111065_RS02080 PF01043 SecA preprotein cross-linking domain RIMD111065_RS02080 PF07517 SecA DEAD-like domain RIMD111065_RS02080 PF07516 SecA Wing and Scaffold domain RIMD111065_RS02080 PF02810 SEC-C motif RIMD111065_RS02090 PF00293 NUDIX domain RIMD111065_RS02095 PF03884 DNA gyrase inhibitor YacG RIMD111065_RS02100 PF07072 Cell division protein RIMD111065_RS02105 PF01121 Dephospho-CoA kinase RIMD111065_RS02110 PF06750 Bacterial Peptidase A24 N-terminal domain RIMD111065_RS02110 PF01478 Type IV leader peptidase family RIMD111065_RS02115 PF00482 Type II secretion system (T2SS), protein F RIMD111065_RS02120 PF00437 Type II/IV secretion system protein RIMD111065_RS02120 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RIMD111065_RS02130 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RIMD111065_RS02130 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RIMD111065_RS02140 PF01510 N-acetylmuramoyl-L-alanine amidase RIMD111065_RS02145 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS02145 PF07729 FCD domain RIMD111065_RS02150 PF00456 Transketolase, thiamine diphosphate binding domain RIMD111065_RS02150 PF17831 Pyruvate dehydrogenase E1 component middle domain RIMD111065_RS02155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RIMD111065_RS02155 PF00364 Biotin-requiring enzyme RIMD111065_RS02155 PF02817 e3 binding domain RIMD111065_RS02160 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS02160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_RS02170 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS02170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS02170 PF00672 HAMP domain RIMD111065_RS02175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS02175 PF00672 HAMP domain RIMD111065_RS02175 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS02180 PF01734 Patatin-like phospholipase RIMD111065_RS02185 PF00330 Aconitase family (aconitate hydratase) RIMD111065_RS02185 PF11791 Aconitate B N-terminal domain RIMD111065_RS02185 PF06434 Aconitate hydratase 2 N-terminus RIMD111065_RS02190 PF00563 EAL domain RIMD111065_RS02190 PF12792 CSS motif domain associated with EAL RIMD111065_RS02195 PF03466 LysR substrate binding domain RIMD111065_RS02195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS02200 PF01810 LysE type translocator RIMD111065_RS02205 PF01565 FAD binding domain RIMD111065_RS02205 PF04030 D-arabinono-1,4-lactone oxidase RIMD111065_RS02210 PF07683 Cobalamin synthesis protein cobW C-terminal domain RIMD111065_RS02210 PF02492 CobW/HypB/UreG, nucleotide-binding domain RIMD111065_RS02215 PF07690 Major Facilitator Superfamily RIMD111065_RS02225 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RIMD111065_RS02230 PF02152 Dihydroneopterin aldolase RIMD111065_RS02235 PF02660 Glycerol-3-phosphate acyltransferase RIMD111065_RS02275 PF07670 Nucleoside recognition RIMD111065_RS02280 PF00072 Response regulator receiver domain RIMD111065_RS02280 PF01584 CheW-like domain RIMD111065_RS02285 PF00106 short chain dehydrogenase RIMD111065_RS02290 PF13718 GNAT acetyltransferase 2 RIMD111065_RS02290 PF05127 Helicase RIMD111065_RS02290 PF17176 tRNA-binding domain RIMD111065_RS02290 PF08351 Domain of unknown function (DUF1726) RIMD111065_RS02305 PF00210 Ferritin-like domain RIMD111065_RS02315 PF02142 MGS-like domain RIMD111065_RS02330 PF00710 Asparaginase, N-terminal RIMD111065_RS02330 PF17763 Glutaminase/Asparaginase C-terminal domain RIMD111065_RS02345 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS02350 PF00367 phosphotransferase system, EIIB RIMD111065_RS02350 PF02378 Phosphotransferase system, EIIC RIMD111065_RS02355 PF00128 Alpha amylase, catalytic domain RIMD111065_RS02355 PF11941 Domain of unknown function (DUF3459) RIMD111065_RS02360 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_RS02360 PF12464 Maltose acetyltransferase RIMD111065_RS02365 PF01037 Lrp/AsnC ligand binding domain RIMD111065_RS02370 PF00892 EamA-like transporter family RIMD111065_RS02380 PF00171 Aldehyde dehydrogenase family RIMD111065_RS02385 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS02390 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS02395 PF00005 ABC transporter RIMD111065_RS02395 PF08402 TOBE domain RIMD111065_RS02400 PF13416 Bacterial extracellular solute-binding protein RIMD111065_RS02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS02405 PF03466 LysR substrate binding domain RIMD111065_RS02410 PF03553 Na+/H+ antiporter family RIMD111065_RS02450 PF00534 Glycosyl transferases group 1 RIMD111065_RS02450 PF08323 Starch synthase catalytic domain RIMD111065_RS02455 PF00483 Nucleotidyl transferase RIMD111065_RS02460 PF05175 Methyltransferase small domain RIMD111065_RS02460 PF08468 Methyltransferase small domain N-terminal RIMD111065_RS02465 PF00701 Dihydrodipicolinate synthetase family RIMD111065_RS02470 PF00563 EAL domain RIMD111065_RS02470 PF01590 GAF domain RIMD111065_RS02470 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS02470 PF00360 Phytochrome region RIMD111065_RS02480 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS02485 PF17209 Hfq protein RIMD111065_RS02490 PF04403 Paraquat-inducible protein A RIMD111065_RS02495 PF02470 MlaD protein RIMD111065_RS02500 PF03886 ABC-type transport auxiliary lipoprotein component RIMD111065_RS02505 PF01389 OmpA-like transmembrane domain RIMD111065_RS02505 PF00691 OmpA family RIMD111065_RS02515 PF00657 GDSL-like Lipase/Acylhydrolase RIMD111065_RS02520 PF04076 Bacterial OB fold (BOF) protein RIMD111065_RS02525 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RIMD111065_RS02525 PF01464 Transglycosylase SLT domain RIMD111065_RS02530 PF04362 Bacterial Fe(2+) trafficking RIMD111065_RS02535 PF14815 NUDIX domain RIMD111065_RS02535 PF10576 Iron-sulfur binding domain of endonuclease III RIMD111065_RS02535 PF00730 HhH-GPD superfamily base excision DNA repair protein RIMD111065_RS02535 PF00633 Helix-hairpin-helix motif RIMD111065_RS02540 PF16537 Type II secretion system protein B RIMD111065_RS02545 PF13401 AAA domain RIMD111065_RS02545 PF01471 Putative peptidoglycan binding domain RIMD111065_RS02550 PF12627 Probable RNA and SrmB- binding site of polymerase A RIMD111065_RS02550 PF01966 HD domain RIMD111065_RS02550 PF01743 Poly A polymerase head domain RIMD111065_RS02565 PF04172 LrgB-like family RIMD111065_RS02570 PF03788 LrgA family RIMD111065_RS02575 PF03466 LysR substrate binding domain RIMD111065_RS02575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS02580 PF00155 Aminotransferase class I and II RIMD111065_RS02580 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS02600 PF07350 Protein of unknown function (DUF1479) RIMD111065_RS02605 PF04073 Aminoacyl-tRNA editing domain RIMD111065_RS02610 PF01384 Phosphate transporter family RIMD111065_RS02615 PF01865 Protein of unknown function DUF47 RIMD111065_RS02620 PF01928 CYTH domain RIMD111065_RS02630 PF03279 Bacterial lipid A biosynthesis acyltransferase RIMD111065_RS02635 PF00294 pfkB family carbohydrate kinase RIMD111065_RS02635 PF01467 Cytidylyltransferase-like RIMD111065_RS02640 PF02321 Outer membrane efflux protein RIMD111065_RS02645 PF00293 NUDIX domain RIMD111065_RS02650 PF06853 Protein of unknown function (DUF1249) RIMD111065_RS02655 PF00149 Calcineurin-like phosphoesterase RIMD111065_RS02660 PF05728 Uncharacterised protein family (UPF0227) RIMD111065_RS02665 PF00293 NUDIX domain RIMD111065_RS02675 PF07869 Protein of unknown function (DUF1656) RIMD111065_RS02680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS02680 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_RS02685 PF04632 Fusaric acid resistance protein family RIMD111065_RS02690 PF01751 Toprim domain RIMD111065_RS02690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS02690 PF00986 DNA gyrase B subunit, carboxyl terminus RIMD111065_RS02690 PF00204 DNA gyrase B RIMD111065_RS02695 PF03989 DNA gyrase C-terminal domain, beta-propeller RIMD111065_RS02695 PF00521 DNA gyrase/topoisomerase IV, subunit A RIMD111065_RS02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS02705 PF03466 LysR substrate binding domain RIMD111065_RS02740 PF00684 DnaJ central domain RIMD111065_RS02740 PF01556 DnaJ C terminal domain RIMD111065_RS02740 PF00226 DnaJ domain RIMD111065_RS02745 PF00578 AhpC/TSA family RIMD111065_RS02765 PF01553 Acyltransferase RIMD111065_RS02770 PF04012 PspA/IM30 family RIMD111065_RS02785 PF01541 GIY-YIG catalytic domain RIMD111065_RS02795 PF00892 EamA-like transporter family RIMD111065_RS02800 PF03167 Uracil DNA glycosylase superfamily RIMD111065_RS02805 PF00892 EamA-like transporter family RIMD111065_RS02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS02810 PF03466 LysR substrate binding domain RIMD111065_RS02815 PF00950 ABC 3 transport family RIMD111065_RS02820 PF00005 ABC transporter RIMD111065_RS02825 PF01297 Zinc-uptake complex component A periplasmic RIMD111065_RS02845 PF08525 Opacity-associated protein A N-terminal motif RIMD111065_RS02845 PF01551 Peptidase family M23 RIMD111065_RS02845 PF01476 LysM domain RIMD111065_RS02850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_RS02855 PF04222 Protein of unknown function (DUF416) RIMD111065_RS02870 PF02028 BCCT, betaine/carnitine/choline family transporter RIMD111065_RS02875 PF05190 MutS family domain IV RIMD111065_RS02875 PF01624 MutS domain I RIMD111065_RS02875 PF05188 MutS domain II RIMD111065_RS02875 PF05192 MutS domain III RIMD111065_RS02875 PF00488 MutS domain V RIMD111065_RS02880 PF02464 Competence-damaged protein RIMD111065_RS02885 PF00154 recA bacterial DNA recombination protein RIMD111065_RS02890 PF02631 RecX family RIMD111065_RS02895 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RIMD111065_RS02895 PF01411 tRNA synthetases class II (A) RIMD111065_RS02895 PF02272 DHHA1 domain RIMD111065_RS02900 PF00696 Amino acid kinase family RIMD111065_RS02900 PF01842 ACT domain RIMD111065_RS02900 PF13840 ACT domain RIMD111065_RS02905 PF02599 Global regulator protein family RIMD111065_RS02940 PF00768 D-alanyl-D-alanine carboxypeptidase RIMD111065_RS02945 PF09335 SNARE associated Golgi protein RIMD111065_RS02950 PF01595 Cyclin M transmembrane N-terminal domain RIMD111065_RS02950 PF03471 Transporter associated domain RIMD111065_RS02950 PF00571 CBS domain RIMD111065_RS02955 PF08264 Anticodon-binding domain of tRNA RIMD111065_RS02955 PF00133 tRNA synthetases class I (I, L, M and V) RIMD111065_RS02955 PF10458 Valyl tRNA synthetase tRNA binding arm RIMD111065_RS02960 PF04364 DNA polymerase III chi subunit, HolC RIMD111065_RS02965 PF02789 Cytosol aminopeptidase family, N-terminal domain RIMD111065_RS02965 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_RS02970 PF03739 Lipopolysaccharide export system permease LptF/LptG RIMD111065_RS02975 PF03739 Lipopolysaccharide export system permease LptF/LptG RIMD111065_RS02990 PF00909 Ammonium Transporter Family RIMD111065_RS02995 PF01938 TRAM domain RIMD111065_RS02995 PF05958 tRNA (Uracil-5-)-methyltransferase RIMD111065_RS03005 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS03010 PF01026 TatD related DNase RIMD111065_RS03015 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_RS03015 PF07670 Nucleoside recognition RIMD111065_RS03015 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_RS03025 PF01791 DeoC/LacD family aldolase RIMD111065_RS03030 PF00591 Glycosyl transferase family, a/b domain RIMD111065_RS03030 PF02885 Glycosyl transferase family, helical bundle domain RIMD111065_RS03030 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RIMD111065_RS03035 PF01676 Metalloenzyme superfamily RIMD111065_RS03040 PF01048 Phosphorylase superfamily RIMD111065_RS03045 PF00563 EAL domain RIMD111065_RS03045 PF05231 MASE1 RIMD111065_RS03045 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS03045 PF08447 PAS fold RIMD111065_RS03045 PF08448 PAS fold RIMD111065_RS03045 PF13426 PAS domain RIMD111065_RS03055 PF18429 Domain of unknown function (DUF5609) RIMD111065_RS03070 PF18073 Rubredoxin metal binding domain RIMD111065_RS03075 PF07238 PilZ domain RIMD111065_RS03080 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ RIMD111065_RS03090 PF00216 Bacterial DNA-binding protein RIMD111065_RS03105 PF01207 Dihydrouridine synthase (Dus) RIMD111065_RS03110 PF01475 Ferric uptake regulator family RIMD111065_RS03125 PF05525 Branched-chain amino acid transport protein RIMD111065_RS03130 PF05525 Branched-chain amino acid transport protein RIMD111065_RS03135 PF05175 Methyltransferase small domain RIMD111065_RS03140 PF00271 Helicase conserved C-terminal domain RIMD111065_RS03140 PF00270 DEAD/DEAH box helicase RIMD111065_RS03145 PF03883 Peroxide stress protein YaaA RIMD111065_RS03150 PF00437 Type II/IV secretion system protein RIMD111065_RS03155 PF00437 Type II/IV secretion system protein RIMD111065_RS03160 PF01168 Alanine racemase, N-terminal domain RIMD111065_RS03165 PF14748 Pyrroline-5-carboxylate reductase dimerisation RIMD111065_RS03165 PF03807 NADP oxidoreductase coenzyme F420-dependent RIMD111065_RS03170 PF02325 YGGT family RIMD111065_RS03175 PF02594 Uncharacterised ACR, YggU family COG1872 RIMD111065_RS03190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS03200 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_RS03205 PF10952 Protein of unknown function (DUF2753) RIMD111065_RS03210 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS03225 PF00106 short chain dehydrogenase RIMD111065_RS03230 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RIMD111065_RS03230 PF04073 Aminoacyl-tRNA editing domain RIMD111065_RS03230 PF03129 Anticodon binding domain RIMD111065_RS03235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS03235 PF00672 HAMP domain RIMD111065_RS03240 PF01330 RuvA N terminal domain RIMD111065_RS03240 PF07499 RuvA, C-terminal domain RIMD111065_RS03245 PF05491 RuvB C-terminal winged helix domain RIMD111065_RS03245 PF05496 Holliday junction DNA helicase RuvB P-loop domain RIMD111065_RS03245 PF17864 RuvB AAA lid domain RIMD111065_RS03250 PF01654 Cytochrome bd terminal oxidase subunit I RIMD111065_RS03255 PF02322 Cytochrome bd terminal oxidase subunit II RIMD111065_RS03260 PF08173 Membrane bound YbgT-like protein RIMD111065_RS03265 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) RIMD111065_RS03270 PF03061 Thioesterase superfamily RIMD111065_RS03275 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS03280 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_RS03290 PF07676 WD40-like Beta Propeller Repeat RIMD111065_RS03290 PF04052 TolB amino-terminal domain RIMD111065_RS03295 PF00691 OmpA family RIMD111065_RS03300 PF13174 Tetratricopeptide repeat RIMD111065_RS03300 PF16331 TolA binding protein trimerisation RIMD111065_RS03375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS03375 PF00672 HAMP domain RIMD111065_RS03380 PF02445 Quinolinate synthetase A protein RIMD111065_RS03385 PF01263 Aldose 1-epimerase RIMD111065_RS03390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RIMD111065_RS03390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RIMD111065_RS03395 PF02446 4-alpha-glucanotransferase RIMD111065_RS03400 PF00128 Alpha amylase, catalytic domain RIMD111065_RS03400 PF02806 Alpha amylase, C-terminal all-beta domain RIMD111065_RS03400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_RS03405 PF00128 Alpha amylase, catalytic domain RIMD111065_RS03405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_RS03410 PF01641 SelR domain RIMD111065_RS03420 PF00293 NUDIX domain RIMD111065_RS03425 PF16884 N-terminal domain of oxidoreductase RIMD111065_RS03425 PF00107 Zinc-binding dehydrogenase RIMD111065_RS03430 PF02566 OsmC-like protein RIMD111065_RS03435 PF01047 MarR family RIMD111065_RS03450 PF01037 Lrp/AsnC ligand binding domain RIMD111065_RS03465 PF07690 Major Facilitator Superfamily RIMD111065_RS03485 PF00209 Sodium:neurotransmitter symporter family RIMD111065_RS03495 PF00209 Sodium:neurotransmitter symporter family RIMD111065_RS03520 PF00155 Aminotransferase class I and II RIMD111065_RS03520 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS03530 PF01810 LysE type translocator RIMD111065_RS03535 PF01177 Asp/Glu/Hydantoin racemase RIMD111065_RS03540 PF07731 Multicopper oxidase RIMD111065_RS03540 PF00394 Multicopper oxidase RIMD111065_RS03540 PF07732 Multicopper oxidase RIMD111065_RS03550 PF04074 YhcH/YjgK/YiaL RIMD111065_RS03555 PF00871 Acetokinase family RIMD111065_RS03560 PF00924 Mechanosensitive ion channel RIMD111065_RS03565 PF17969 L,D-transpeptidase C-terminal domain RIMD111065_RS03565 PF03734 L,D-transpeptidase catalytic domain RIMD111065_RS03570 PF00474 Sodium:solute symporter family RIMD111065_RS03610 PF02525 Flavodoxin-like fold RIMD111065_RS03615 PF03466 LysR substrate binding domain RIMD111065_RS03615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS03620 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RIMD111065_RS03630 PF00005 ABC transporter RIMD111065_RS03630 PF12848 ABC transporter RIMD111065_RS03635 PF01380 SIS domain RIMD111065_RS03635 PF00571 CBS domain RIMD111065_RS03640 PF01957 NfeD-like C-terminal, partner-binding RIMD111065_RS03645 PF16200 C-terminal region of band_7 RIMD111065_RS03645 PF01145 SPFH domain / Band 7 family RIMD111065_RS03650 PF10414 Sirohaem synthase dimerisation region RIMD111065_RS03650 PF14824 Sirohaem biosynthesis protein central RIMD111065_RS03650 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_RS03655 PF01507 Phosphoadenosine phosphosulfate reductase family RIMD111065_RS03660 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS03665 PF02080 TrkA-C domain RIMD111065_RS03665 PF03600 Citrate transporter RIMD111065_RS03710 PF00005 ABC transporter RIMD111065_RS03725 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) RIMD111065_RS03740 PF00719 Inorganic pyrophosphatase RIMD111065_RS03745 PF08245 Mur ligase middle domain RIMD111065_RS03745 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_RS03745 PF01225 Mur ligase family, catalytic domain RIMD111065_RS03750 PF02441 Flavoprotein RIMD111065_RS03755 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS03760 PF00156 Phosphoribosyl transferase domain RIMD111065_RS03765 PF00005 ABC transporter RIMD111065_RS03770 PF01061 ABC-2 type transporter RIMD111065_RS03775 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RIMD111065_RS03780 PF01869 BadF/BadG/BcrA/BcrD ATPase family RIMD111065_RS03800 PF02569 Pantoate-beta-alanine ligase RIMD111065_RS03805 PF02548 Ketopantoate hydroxymethyltransferase RIMD111065_RS03810 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RIMD111065_RS03815 PF01743 Poly A polymerase head domain RIMD111065_RS03815 PF12627 Probable RNA and SrmB- binding site of polymerase A RIMD111065_RS03815 PF12626 Polymerase A arginine-rich C-terminus RIMD111065_RS03820 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_RS03825 PF01258 Prokaryotic dksA/traR C4-type zinc finger RIMD111065_RS03830 PF03749 Sugar fermentation stimulation protein RE domain RIMD111065_RS03830 PF17746 SfsA N-terminal OB domain RIMD111065_RS03840 PF00270 DEAD/DEAH box helicase RIMD111065_RS03840 PF08482 ATP-dependent helicase C-terminal RIMD111065_RS03840 PF00271 Helicase conserved C-terminal domain RIMD111065_RS03840 PF04408 Helicase associated domain (HA2) RIMD111065_RS03845 PF14814 Bifunctional transglycosylase second domain RIMD111065_RS03845 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_RS03845 PF00912 Transglycosylase RIMD111065_RS03850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS03855 PF00893 Small Multidrug Resistance protein RIMD111065_RS03860 PF00893 Small Multidrug Resistance protein RIMD111065_RS03870 PF11849 Domain of unknown function (DUF3369) RIMD111065_RS03880 PF01569 PAP2 superfamily RIMD111065_RS03895 PF00202 Aminotransferase class-III RIMD111065_RS03900 PF00654 Voltage gated chloride channel RIMD111065_RS03910 PF01521 Iron-sulphur cluster biosynthesis RIMD111065_RS03935 PF01810 LysE type translocator RIMD111065_RS03950 PF05930 Prophage CP4-57 regulatory protein (AlpA) RIMD111065_RS03995 PF04002 RadC-like JAB domain RIMD111065_RS04040 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A RIMD111065_RS04045 PF02384 N-6 DNA Methylase RIMD111065_RS04050 PF01420 Type I restriction modification DNA specificity domain RIMD111065_RS04055 PF12102 Domain of unknown function (DUF3578) RIMD111065_RS04055 PF07728 AAA domain (dynein-related subfamily) RIMD111065_RS04055 PF12102 Domain of unknown function (DUF3578) RIMD111065_RS04055 PF07728 AAA domain (dynein-related subfamily) RIMD111065_RS04065 PF18766 SWI2/SNF2 ATPase RIMD111065_RS04065 PF11867 Domain of unknown function (DUF3387) RIMD111065_RS04065 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RIMD111065_RS04070 PF13086 AAA domain RIMD111065_RS04070 PF13087 AAA domain RIMD111065_RS04070 PF13086 AAA domain RIMD111065_RS04070 PF13195 Protein of unknown function (DUF4011) RIMD111065_RS04070 PF13195 Protein of unknown function (DUF4011) RIMD111065_RS04070 PF13087 AAA domain RIMD111065_RS04075 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS04080 PF01207 Dihydrouridine synthase (Dus) RIMD111065_RS04085 PF02321 Outer membrane efflux protein RIMD111065_RS04090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS04120 PF00072 Response regulator receiver domain RIMD111065_RS04125 PF00854 POT family RIMD111065_RS04130 PF00483 Nucleotidyl transferase RIMD111065_RS04140 PF00459 Inositol monophosphatase family RIMD111065_RS04145 PF03795 YCII-related domain RIMD111065_RS04150 PF04279 Intracellular septation protein A RIMD111065_RS04155 PF00282 Pyridoxal-dependent decarboxylase conserved domain RIMD111065_RS04160 PF03006 Haemolysin-III related RIMD111065_RS04165 PF06826 Predicted Permease Membrane Region RIMD111065_RS04165 PF02080 TrkA-C domain RIMD111065_RS04175 PF01584 CheW-like domain RIMD111065_RS04175 PF00072 Response regulator receiver domain RIMD111065_RS04180 PF13472 GDSL-like Lipase/Acylhydrolase family RIMD111065_RS04185 PF00005 ABC transporter RIMD111065_RS04195 PF08338 Domain of unknown function (DUF1731) RIMD111065_RS04195 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS04200 PF12792 CSS motif domain associated with EAL RIMD111065_RS04200 PF00563 EAL domain RIMD111065_RS04205 PF00155 Aminotransferase class I and II RIMD111065_RS04210 PF01483 Proprotein convertase P-domain RIMD111065_RS04210 PF04389 Peptidase family M28 RIMD111065_RS04215 PF02390 Putative methyltransferase RIMD111065_RS04220 PF04320 Protein with unknown function (DUF469) RIMD111065_RS04225 PF04960 Glutaminase RIMD111065_RS04230 PF00581 Rhodanese-like domain RIMD111065_RS04235 PF05922 Peptidase inhibitor I9 RIMD111065_RS04235 PF00082 Subtilase family RIMD111065_RS04240 PF06004 Bacterial protein of unknown function (DUF903) RIMD111065_RS04245 PF00664 ABC transporter transmembrane region RIMD111065_RS04245 PF00005 ABC transporter RIMD111065_RS04250 PF00561 alpha/beta hydrolase fold RIMD111065_RS04265 PF00801 PKD domain RIMD111065_RS04265 PF05547 Immune inhibitor A peptidase M6 RIMD111065_RS04270 PF06877 Regulator of ribonuclease activity B RIMD111065_RS04275 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS04275 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS04275 PF00563 EAL domain RIMD111065_RS04285 PF12852 Cupin RIMD111065_RS04285 PF12833 Helix-turn-helix domain RIMD111065_RS04290 PF02627 Carboxymuconolactone decarboxylase family RIMD111065_RS04295 PF04224 Protein of unknown function, DUF417 RIMD111065_RS04310 PF09905 DNA-binding protein VF530 RIMD111065_RS04315 PF02666 Phosphatidylserine decarboxylase RIMD111065_RS04320 PF03193 RsgA GTPase RIMD111065_RS04325 PF00929 Exonuclease RIMD111065_RS04365 PF00313 'Cold-shock' DNA-binding domain RIMD111065_RS04375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS04375 PF00672 HAMP domain RIMD111065_RS04380 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_RS04385 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_RS04425 PF00704 Glycosyl hydrolases family 18 RIMD111065_RS04425 PF06483 Chitinase C RIMD111065_RS04440 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_RS04445 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS04450 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS04460 PF00593 TonB dependent receptor RIMD111065_RS04460 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS04465 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS04470 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS04470 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_RS04480 PF00005 ABC transporter RIMD111065_RS04480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS04485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS04485 PF00005 ABC transporter RIMD111065_RS04490 PF07687 Peptidase dimerisation domain RIMD111065_RS04490 PF01546 Peptidase family M20/M25/M40 RIMD111065_RS04495 PF00156 Phosphoribosyl transferase domain RIMD111065_RS04500 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) RIMD111065_RS04505 PF07417 Sigma factor-binding transcriptional regulator Crl RIMD111065_RS04510 PF01472 PUA domain RIMD111065_RS04510 PF00696 Amino acid kinase family RIMD111065_RS04515 PF00171 Aldehyde dehydrogenase family RIMD111065_RS04525 PF00582 Universal stress protein family RIMD111065_RS04545 PF01568 Molydopterin dinucleotide binding domain RIMD111065_RS04545 PF00384 Molybdopterin oxidoreductase RIMD111065_RS04545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_RS04545 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_RS04550 PF14824 Sirohaem biosynthesis protein central RIMD111065_RS04550 PF10414 Sirohaem synthase dimerisation region RIMD111065_RS04550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_RS04560 PF00005 ABC transporter RIMD111065_RS04565 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS04570 PF00005 ABC transporter RIMD111065_RS04575 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_RS04575 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS04575 PF13806 Rieske-like [2Fe-2S] domain RIMD111065_RS04575 PF18267 Rubredoxin NAD+ reductase C-terminal domain RIMD111065_RS04575 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_RS04575 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_RS04580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_RS04580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_RS04580 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_RS04580 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS04580 PF18267 Rubredoxin NAD+ reductase C-terminal domain RIMD111065_RS04580 PF13806 Rieske-like [2Fe-2S] domain RIMD111065_RS04585 PF00294 pfkB family carbohydrate kinase RIMD111065_RS04590 PF04227 Indigoidine synthase A like protein RIMD111065_RS04595 PF04227 Indigoidine synthase A like protein RIMD111065_RS04600 PF00194 Eukaryotic-type carbonic anhydrase RIMD111065_RS04605 PF03150 Di-haem cytochrome c peroxidase RIMD111065_RS04605 PF00034 Cytochrome c RIMD111065_RS04640 PF00550 Phosphopantetheine attachment site RIMD111065_RS04645 PF00550 Phosphopantetheine attachment site RIMD111065_RS04655 PF00501 AMP-binding enzyme RIMD111065_RS04655 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS04660 PF07977 FabA-like domain RIMD111065_RS04670 PF00221 Aromatic amino acid lyase RIMD111065_RS04695 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_RS04695 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_RS04710 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_RS04710 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_RS04720 PF00994 Probable molybdopterin binding domain RIMD111065_RS04730 PF06738 Putative threonine/serine exporter RIMD111065_RS04735 PF12821 Threonine/Serine exporter, ThrE RIMD111065_RS04740 PF00186 Dihydrofolate reductase RIMD111065_RS04745 PF00005 ABC transporter RIMD111065_RS04745 PF00571 CBS domain RIMD111065_RS04750 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS04755 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RIMD111065_RS04760 PF01507 Phosphoadenosine phosphosulfate reductase family RIMD111065_RS04765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_RS04765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_RS04770 PF00258 Flavodoxin RIMD111065_RS04770 PF00667 FAD binding domain RIMD111065_RS04770 PF00175 Oxidoreductase NAD-binding domain RIMD111065_RS04775 PF02567 Phenazine biosynthesis-like protein RIMD111065_RS04780 PF00152 tRNA synthetases class II (D, K and N) RIMD111065_RS04780 PF01336 OB-fold nucleic acid binding domain RIMD111065_RS04790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS04790 PF00672 HAMP domain RIMD111065_RS04790 PF02743 Cache domain RIMD111065_RS04795 PF03616 Sodium/glutamate symporter RIMD111065_RS04800 PF17763 Glutaminase/Asparaginase C-terminal domain RIMD111065_RS04800 PF00710 Asparaginase, N-terminal RIMD111065_RS04805 PF07023 Protein of unknown function (DUF1315) RIMD111065_RS04810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RIMD111065_RS04810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RIMD111065_RS04825 PF01343 Peptidase family S49 RIMD111065_RS04830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_RS04830 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS04835 PF00881 Nitroreductase family RIMD111065_RS04840 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_RS04840 PF12464 Maltose acetyltransferase RIMD111065_RS04845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_RS04845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_RS04845 PF01842 ACT domain RIMD111065_RS04855 PF00107 Zinc-binding dehydrogenase RIMD111065_RS04855 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_RS04860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS04860 PF03466 LysR substrate binding domain RIMD111065_RS04865 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RIMD111065_RS04865 PF00367 phosphotransferase system, EIIB RIMD111065_RS04865 PF02378 Phosphotransferase system, EIIC RIMD111065_RS04870 PF00474 Sodium:solute symporter family RIMD111065_RS04880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RIMD111065_RS04880 PF02785 Biotin carboxylase C-terminal domain RIMD111065_RS04880 PF00289 Biotin carboxylase, N-terminal domain RIMD111065_RS04885 PF00364 Biotin-requiring enzyme RIMD111065_RS04890 PF01220 Dehydroquinase class II RIMD111065_RS04895 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS04895 PF00501 AMP-binding enzyme RIMD111065_RS04895 PF16177 Acetyl-coenzyme A synthetase N-terminus RIMD111065_RS04905 PF00563 EAL domain RIMD111065_RS04905 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS04905 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS04905 PF13188 PAS domain RIMD111065_RS04925 PF02613 Nitrate reductase delta subunit RIMD111065_RS04940 PF00464 Serine hydroxymethyltransferase RIMD111065_RS04950 PF03477 ATP cone domain RIMD111065_RS04955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RIMD111065_RS04955 PF01872 RibD C-terminal domain RIMD111065_RS04960 PF00677 Lumazine binding domain RIMD111065_RS04965 PF00925 GTP cyclohydrolase II RIMD111065_RS04965 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RIMD111065_RS04970 PF00885 6,7-dimethyl-8-ribityllumazine synthase RIMD111065_RS04975 PF01029 NusB family RIMD111065_RS04980 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_RS04980 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_RS04985 PF04608 Phosphatidylglycerophosphatase A RIMD111065_RS04990 PF00005 ABC transporter RIMD111065_RS04990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS04995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS05000 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS05005 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS05005 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_RS05010 PF02780 Transketolase, C-terminal domain RIMD111065_RS05010 PF02779 Transketolase, pyrimidine binding domain RIMD111065_RS05010 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RIMD111065_RS05015 PF00348 Polyprenyl synthetase RIMD111065_RS05020 PF02609 Exonuclease VII small subunit RIMD111065_RS05025 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS05030 PF13677 Membrane MotB of proton-channel complex MotA/MotB RIMD111065_RS05030 PF00691 OmpA family RIMD111065_RS05035 PF03449 Transcription elongation factor, N-terminal RIMD111065_RS05035 PF01272 Transcription elongation factor, GreA/GreB, C-term RIMD111065_RS05045 PF01985 CRS1 / YhbY (CRM) domain RIMD111065_RS05050 PF01728 FtsJ-like methyltransferase RIMD111065_RS05055 PF01434 Peptidase family M41 RIMD111065_RS05055 PF06480 FtsH Extracellular RIMD111065_RS05055 PF17862 AAA+ lid domain RIMD111065_RS05055 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS05060 PF00809 Pterin binding enzyme RIMD111065_RS05065 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RIMD111065_RS05065 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RIMD111065_RS05065 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RIMD111065_RS05065 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RIMD111065_RS05070 PF00121 Triosephosphate isomerase RIMD111065_RS05075 PF03840 Preprotein translocase SecG subunit RIMD111065_RS05090 PF02576 RimP N-terminal domain RIMD111065_RS05090 PF17384 RimP C-terminal SH3 domain RIMD111065_RS05095 PF08529 NusA N-terminal domain RIMD111065_RS05095 PF13184 NusA-like KH domain RIMD111065_RS05095 PF00575 S1 RNA binding domain RIMD111065_RS05100 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS05100 PF04760 Translation initiation factor IF-2, N-terminal region RIMD111065_RS05100 PF08364 Bacterial translation initiation factor IF-2 associated region RIMD111065_RS05100 PF11987 Translation-initiation factor 2 RIMD111065_RS05105 PF02033 Ribosome-binding factor A RIMD111065_RS05110 PF09157 Pseudouridine synthase II TruB, C-terminal RIMD111065_RS05110 PF16198 tRNA pseudouridylate synthase B C-terminal domain RIMD111065_RS05110 PF01509 TruB family pseudouridylate synthase (N terminal domain) RIMD111065_RS05115 PF00312 Ribosomal protein S15 RIMD111065_RS05120 PF00013 KH domain RIMD111065_RS05120 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RIMD111065_RS05120 PF01138 3' exoribonuclease family, domain 1 RIMD111065_RS05120 PF03725 3' exoribonuclease family, domain 2 RIMD111065_RS05120 PF00575 S1 RNA binding domain RIMD111065_RS05125 PF07690 Major Facilitator Superfamily RIMD111065_RS05130 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS05130 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS05130 PF00563 EAL domain RIMD111065_RS05135 PF02635 DsrE/DsrF-like family RIMD111065_RS05145 PF00206 Lyase RIMD111065_RS05145 PF10415 Fumarase C C-terminus RIMD111065_RS05150 PF03575 Peptidase family S51 RIMD111065_RS05155 PF13722 5TM C-terminal transporter carbon starvation CstA RIMD111065_RS05155 PF02554 Carbon starvation protein CstA RIMD111065_RS05160 PF00072 Response regulator receiver domain RIMD111065_RS05160 PF04397 LytTr DNA-binding domain RIMD111065_RS05165 PF06580 Histidine kinase RIMD111065_RS05165 PF07694 5TMR of 5TMR-LYT RIMD111065_RS05170 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS05170 PF00072 Response regulator receiver domain RIMD111065_RS05175 PF00989 PAS fold RIMD111065_RS05175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS05175 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS05180 PF13247 4Fe-4S dicluster domain RIMD111065_RS05185 PF03916 Polysulphide reductase, NrfD RIMD111065_RS05190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_RS05190 PF01568 Molydopterin dinucleotide binding domain RIMD111065_RS05190 PF00384 Molybdopterin oxidoreductase RIMD111065_RS05210 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RIMD111065_RS05215 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RIMD111065_RS05220 PF03734 L,D-transpeptidase catalytic domain RIMD111065_RS05220 PF17969 L,D-transpeptidase C-terminal domain RIMD111065_RS05230 PF01523 Putative modulator of DNA gyrase RIMD111065_RS05235 PF01523 Putative modulator of DNA gyrase RIMD111065_RS05240 PF00258 Flavodoxin RIMD111065_RS05245 PF00589 Phage integrase family RIMD111065_RS05245 PF02899 Phage integrase, N-terminal SAM-like domain RIMD111065_RS05250 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS05255 PF01741 Large-conductance mechanosensitive channel, MscL RIMD111065_RS05260 PF13098 Thioredoxin-like domain RIMD111065_RS05260 PF10411 Disulfide bond isomerase protein N-terminus RIMD111065_RS05265 PF02272 DHHA1 domain RIMD111065_RS05265 PF01368 DHH family RIMD111065_RS05265 PF17768 RecJ OB domain RIMD111065_RS05275 PF13411 MerR HTH family regulatory protein RIMD111065_RS05290 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_RS05295 PF12146 Serine aminopeptidase, S33 RIMD111065_RS05305 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RIMD111065_RS05305 PF04055 Radical SAM superfamily RIMD111065_RS05310 PF03099 Biotin/lipoate A/B protein ligase family RIMD111065_RS05315 PF04359 Protein of unknown function (DUF493) RIMD111065_RS05320 PF00768 D-alanyl-D-alanine carboxypeptidase RIMD111065_RS05320 PF07943 Penicillin-binding protein 5, C-terminal domain RIMD111065_RS05325 PF03330 Lytic transglycolase RIMD111065_RS05325 PF05036 Sporulation related domain RIMD111065_RS05330 PF13406 Transglycosylase SLT domain RIMD111065_RS05335 PF01098 Cell cycle protein RIMD111065_RS05340 PF03717 Penicillin-binding Protein dimerisation domain RIMD111065_RS05340 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_RS05345 PF02590 Predicted SPOUT methyltransferase RIMD111065_RS05355 PF01467 Cytidylyltransferase-like RIMD111065_RS05375 PF13603 Leucyl-tRNA synthetase, Domain 2 RIMD111065_RS05375 PF00133 tRNA synthetases class I (I, L, M and V) RIMD111065_RS05375 PF08264 Anticodon-binding domain of tRNA RIMD111065_RS05380 PF07295 Zinc-ribbon containing domain RIMD111065_RS05385 PF00795 Carbon-nitrogen hydrolase RIMD111065_RS05390 PF03471 Transporter associated domain RIMD111065_RS05390 PF00571 CBS domain RIMD111065_RS05395 PF02130 Uncharacterized protein family UPF0054 RIMD111065_RS05400 PF02562 PhoH-like protein RIMD111065_RS05405 PF00919 Uncharacterized protein family UPF0004 RIMD111065_RS05405 PF04055 Radical SAM superfamily RIMD111065_RS05405 PF01938 TRAM domain RIMD111065_RS05410 PF01494 FAD binding domain RIMD111065_RS05415 PF00857 Isochorismatase family RIMD111065_RS05420 PF00313 'Cold-shock' DNA-binding domain RIMD111065_RS05425 PF05230 MASE2 domain RIMD111065_RS05425 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS05430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS05430 PF03466 LysR substrate binding domain RIMD111065_RS05440 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS05450 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS05450 PF08448 PAS fold RIMD111065_RS05460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_RS05460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_RS05470 PF09997 Predicted membrane protein (DUF2238) RIMD111065_RS05475 PF08207 Elongation factor P (EF-P) KOW-like domain RIMD111065_RS05475 PF01132 Elongation factor P (EF-P) OB domain RIMD111065_RS05475 PF09285 Elongation factor P, C-terminal RIMD111065_RS05485 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_RS05495 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS05495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS05495 PF08521 Two-component sensor kinase N-terminal RIMD111065_RS05500 PF00072 Response regulator receiver domain RIMD111065_RS05500 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS05520 PF00501 AMP-binding enzyme RIMD111065_RS05535 PF06224 Winged helix DNA-binding domain RIMD111065_RS05555 PF02313 Fumarate reductase subunit D RIMD111065_RS05560 PF02300 Fumarate reductase subunit C RIMD111065_RS05565 PF13085 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS05565 PF13183 4Fe-4S dicluster domain RIMD111065_RS05570 PF00890 FAD binding domain RIMD111065_RS05570 PF02910 Fumarate reductase flavoprotein C-term RIMD111065_RS05575 PF00672 HAMP domain RIMD111065_RS05575 PF02743 Cache domain RIMD111065_RS05575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS05580 PF03009 Glycerophosphoryl diester phosphodiesterase family RIMD111065_RS05585 PF00924 Mechanosensitive ion channel RIMD111065_RS05585 PF12795 Mechanosensitive ion channel porin domain RIMD111065_RS05585 PF12794 Mechanosensitive ion channel inner membrane domain 1 RIMD111065_RS05595 PF08525 Opacity-associated protein A N-terminal motif RIMD111065_RS05595 PF01476 LysM domain RIMD111065_RS05595 PF01551 Peptidase family M23 RIMD111065_RS05610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS05610 PF03466 LysR substrate binding domain RIMD111065_RS05625 PF02743 Cache domain RIMD111065_RS05625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS05625 PF00672 HAMP domain RIMD111065_RS05630 PF03466 LysR substrate binding domain RIMD111065_RS05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS05635 PF00912 Transglycosylase RIMD111065_RS05635 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_RS05635 PF17092 Penicillin-binding protein OB-like domain RIMD111065_RS05640 PF11104 Type IV pilus assembly protein PilM; RIMD111065_RS05650 PF04350 Pilus assembly protein, PilO RIMD111065_RS05660 PF00263 Bacterial type II and III secretion system protein RIMD111065_RS05660 PF03958 Bacterial type II/III secretion system short domain RIMD111065_RS05660 PF11741 AMIN domain RIMD111065_RS05660 PF07660 Secretin and TonB N terminus short domain RIMD111065_RS05665 PF01202 Shikimate kinase RIMD111065_RS05670 PF01761 3-dehydroquinate synthase RIMD111065_RS05680 PF02086 D12 class N6 adenine-specific DNA methyltransferase RIMD111065_RS05685 PF00834 Ribulose-phosphate 3 epimerase family RIMD111065_RS05690 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS05695 PF00579 tRNA synthetases class I (W and Y) RIMD111065_RS05705 PF00117 Glutamine amidotransferase class-I RIMD111065_RS05710 PF00202 Aminotransferase class-III RIMD111065_RS05715 PF04958 Arginine N-succinyltransferase beta subunit RIMD111065_RS05720 PF00171 Aldehyde dehydrogenase family RIMD111065_RS05730 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS05735 PF07690 Major Facilitator Superfamily RIMD111065_RS05740 PF10371 Domain of unknown function RIMD111065_RS05740 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RIMD111065_RS05740 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RIMD111065_RS05740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_RS05740 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RIMD111065_RS05750 PF16657 Maltogenic Amylase, C-terminal domain RIMD111065_RS05750 PF00128 Alpha amylase, catalytic domain RIMD111065_RS05760 PF04266 ASCH domain RIMD111065_RS05770 PF01048 Phosphorylase superfamily RIMD111065_RS05775 PF04973 Nicotinamide mononucleotide transporter RIMD111065_RS05780 PF03600 Citrate transporter RIMD111065_RS05780 PF02080 TrkA-C domain RIMD111065_RS05835 PF08220 DeoR-like helix-turn-helix domain RIMD111065_RS05835 PF00455 DeoR C terminal sensor domain RIMD111065_RS05840 PF08013 Tagatose 6 phosphate kinase RIMD111065_RS05845 PF01380 SIS domain RIMD111065_RS05850 PF01979 Amidohydrolase family RIMD111065_RS05855 PF01116 Fructose-bisphosphate aldolase class-II RIMD111065_RS05860 PF03830 PTS system sorbose subfamily IIB component RIMD111065_RS05865 PF03609 PTS system sorbose-specific iic component RIMD111065_RS05870 PF03613 PTS system mannose/fructose/sorbose family IID component RIMD111065_RS05880 PF04962 KduI/IolB family RIMD111065_RS05890 PF07470 Glycosyl Hydrolase Family 88 RIMD111065_RS05895 PF04055 Radical SAM superfamily RIMD111065_RS05895 PF13186 Iron-sulfur cluster-binding domain RIMD111065_RS05900 PF00884 Sulfatase RIMD111065_RS05910 PF00294 pfkB family carbohydrate kinase RIMD111065_RS05915 PF01081 KDPG and KHG aldolase RIMD111065_RS05925 PF00884 Sulfatase RIMD111065_RS05930 PF06178 Oligogalacturonate-specific porin protein (KdgM) RIMD111065_RS05935 PF02278 Polysaccharide lyase family 8, super-sandwich domain RIMD111065_RS05935 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RIMD111065_RS05935 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RIMD111065_RS05940 PF04002 RadC-like JAB domain RIMD111065_RS05950 PF06071 Protein of unknown function (DUF933) RIMD111065_RS05950 PF01926 50S ribosome-binding GTPase RIMD111065_RS05955 PF01195 Peptidyl-tRNA hydrolase RIMD111065_RS05960 PF02872 5'-nucleotidase, C-terminal domain RIMD111065_RS05960 PF00149 Calcineurin-like phosphoesterase RIMD111065_RS05965 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RIMD111065_RS05965 PF14572 Phosphoribosyl synthetase-associated domain RIMD111065_RS05975 PF00288 GHMP kinases N terminal domain RIMD111065_RS05975 PF08544 GHMP kinases C terminal RIMD111065_RS05980 PF03550 Outer membrane lipoprotein LolB RIMD111065_RS05985 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RIMD111065_RS05985 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RIMD111065_RS05985 PF01488 Shikimate / quinate 5-dehydrogenase RIMD111065_RS05990 PF03462 PCRF domain RIMD111065_RS05990 PF00472 RF-1 domain RIMD111065_RS05995 PF17827 PrmC N-terminal domain RIMD111065_RS05995 PF13847 Methyltransferase domain RIMD111065_RS06005 PF13369 Transglutaminase-like superfamily RIMD111065_RS06010 PF00793 DAHP synthetase I family RIMD111065_RS06015 PF00375 Sodium:dicarboxylate symporter family RIMD111065_RS06020 PF01228 Glycine radical RIMD111065_RS06025 PF03167 Uracil DNA glycosylase superfamily RIMD111065_RS06040 PF00923 Transaldolase/Fructose-6-phosphate aldolase RIMD111065_RS06045 PF01235 Sodium:alanine symporter family RIMD111065_RS06050 PF11992 Domain of unknown function (DUF3488) RIMD111065_RS06050 PF01841 Transglutaminase-like superfamily RIMD111065_RS06050 PF13559 Domain of unknown function (DUF4129) RIMD111065_RS06060 PF07726 ATPase family associated with various cellular activities (AAA) RIMD111065_RS06060 PF17863 AAA lid domain RIMD111065_RS06065 PF00144 Beta-lactamase RIMD111065_RS06080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS06080 PF03466 LysR substrate binding domain RIMD111065_RS06085 PF00854 POT family RIMD111065_RS06090 PF03652 Holliday junction resolvase RIMD111065_RS06095 PF02622 Uncharacterized ACR, COG1678 RIMD111065_RS06100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS06100 PF00672 HAMP domain RIMD111065_RS06100 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS06105 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RIMD111065_RS06105 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RIMD111065_RS06110 PF04452 RNA methyltransferase RIMD111065_RS06115 PF04231 Endonuclease I RIMD111065_RS06120 PF10263 SprT-like family RIMD111065_RS06120 PF17283 SprT-like zinc ribbon domain RIMD111065_RS06125 PF02772 S-adenosylmethionine synthetase, central domain RIMD111065_RS06125 PF02773 S-adenosylmethionine synthetase, C-terminal domain RIMD111065_RS06125 PF00438 S-adenosylmethionine synthetase, N-terminal domain RIMD111065_RS06130 PF02779 Transketolase, pyrimidine binding domain RIMD111065_RS06130 PF02780 Transketolase, C-terminal domain RIMD111065_RS06130 PF00456 Transketolase, thiamine diphosphate binding domain RIMD111065_RS06140 PF01042 Endoribonuclease L-PSP RIMD111065_RS06145 PF01965 DJ-1/PfpI family RIMD111065_RS06150 PF03702 Anhydro-N-acetylmuramic acid kinase RIMD111065_RS06155 PF01476 LysM domain RIMD111065_RS06155 PF08525 Opacity-associated protein A N-terminal motif RIMD111065_RS06155 PF01551 Peptidase family M23 RIMD111065_RS06160 PF00579 tRNA synthetases class I (W and Y) RIMD111065_RS06165 PF01204 Trehalase RIMD111065_RS06175 PF01161 Phosphatidylethanolamine-binding protein RIMD111065_RS06180 PF00709 Adenylosuccinate synthetase RIMD111065_RS06185 PF03466 LysR substrate binding domain RIMD111065_RS06185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS06195 PF00155 Aminotransferase class I and II RIMD111065_RS06200 PF07690 Major Facilitator Superfamily RIMD111065_RS06205 PF03466 LysR substrate binding domain RIMD111065_RS06205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS06210 PF00106 short chain dehydrogenase RIMD111065_RS06215 PF01343 Peptidase family S49 RIMD111065_RS06215 PF08496 Peptidase family S49 N-terminal RIMD111065_RS06220 PF04996 Succinylarginine dihydrolase RIMD111065_RS06225 PF01396 Topoisomerase DNA binding C4 zinc finger RIMD111065_RS06225 PF08272 Topoisomerase I zinc-ribbon-like RIMD111065_RS06225 PF01751 Toprim domain RIMD111065_RS06225 PF01131 DNA topoisomerase RIMD111065_RS06240 PF08447 PAS fold RIMD111065_RS06240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS06245 PF00728 Glycosyl hydrolase family 20, catalytic domain RIMD111065_RS06245 PF02838 Glycosyl hydrolase family 20, domain 2 RIMD111065_RS06250 PF01869 BadF/BadG/BcrA/BcrD ATPase family RIMD111065_RS06260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS06260 PF00005 ABC transporter RIMD111065_RS06265 PF00005 ABC transporter RIMD111065_RS06265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS06270 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS06270 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_RS06275 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS06280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS06285 PF00072 Response regulator receiver domain RIMD111065_RS06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS06285 PF09308 LuxQ, periplasmic RIMD111065_RS06285 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS06305 PF10725 Protein of unknown function (DUF2517) RIMD111065_RS06320 PF05114 Protein of unknown function (DUF692) RIMD111065_RS06340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS06340 PF08447 PAS fold RIMD111065_RS06340 PF13426 PAS domain RIMD111065_RS06355 PF04632 Fusaric acid resistance protein family RIMD111065_RS06360 PF00994 Probable molybdopterin binding domain RIMD111065_RS06360 PF03454 MoeA C-terminal region (domain IV) RIMD111065_RS06360 PF03453 MoeA N-terminal region (domain I and II) RIMD111065_RS06365 PF12804 MobA-like NTP transferase domain RIMD111065_RS06370 PF00005 ABC transporter RIMD111065_RS06375 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS06380 PF12849 PBP superfamily domain RIMD111065_RS06385 PF00158 Sigma-54 interaction domain RIMD111065_RS06385 PF00072 Response regulator receiver domain RIMD111065_RS06385 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS06390 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS06390 PF00989 PAS fold RIMD111065_RS06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS06395 PF12727 PBP superfamily domain RIMD111065_RS06395 PF12728 Helix-turn-helix domain RIMD111065_RS06400 PF02634 FdhD/NarQ family RIMD111065_RS06440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_RS06440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RIMD111065_RS06440 PF00384 Molybdopterin oxidoreductase RIMD111065_RS06440 PF01568 Molydopterin dinucleotide binding domain RIMD111065_RS06440 PF01568 Molydopterin dinucleotide binding domain RIMD111065_RS06440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_RS06440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RIMD111065_RS06440 PF12838 4Fe-4S dicluster domain RIMD111065_RS06440 PF12838 4Fe-4S dicluster domain RIMD111065_RS06440 PF00384 Molybdopterin oxidoreductase RIMD111065_RS06445 PF13247 4Fe-4S dicluster domain RIMD111065_RS06455 PF00072 Response regulator receiver domain RIMD111065_RS06460 PF00390 Malic enzyme, N-terminal domain RIMD111065_RS06460 PF03949 Malic enzyme, NAD binding domain RIMD111065_RS06475 PF00860 Permease family RIMD111065_RS06480 PF10282 Lactonase, 7-bladed beta-propeller RIMD111065_RS06490 PF12795 Mechanosensitive ion channel porin domain RIMD111065_RS06490 PF12794 Mechanosensitive ion channel inner membrane domain 1 RIMD111065_RS06490 PF00924 Mechanosensitive ion channel RIMD111065_RS06495 PF00224 Pyruvate kinase, barrel domain RIMD111065_RS06495 PF02887 Pyruvate kinase, alpha/beta domain RIMD111065_RS06505 PF04389 Peptidase family M28 RIMD111065_RS06505 PF04151 Bacterial pre-peptidase C-terminal domain RIMD111065_RS06510 PF02254 TrkA-N domain RIMD111065_RS06510 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS06520 PF04381 Putative exonuclease, RdgC RIMD111065_RS06530 PF00149 Calcineurin-like phosphoesterase RIMD111065_RS06530 PF12320 Type 5 capsule protein repressor C-terminal domain RIMD111065_RS06535 PF13476 AAA domain RIMD111065_RS06545 PF01292 Prokaryotic cytochrome b561 RIMD111065_RS06555 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS06560 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RIMD111065_RS06565 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_RS06565 PF05524 PEP-utilising enzyme, N-terminal RIMD111065_RS06565 PF02896 PEP-utilising enzyme, TIM barrel domain RIMD111065_RS06570 PF00381 PTS HPr component phosphorylation site RIMD111065_RS06575 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS06580 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_RS06580 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_RS06580 PF17871 AAA lid domain RIMD111065_RS06580 PF02861 Clp amino terminal domain, pathogenicity island component RIMD111065_RS06580 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS06590 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RIMD111065_RS06590 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RIMD111065_RS06595 PF01980 tRNA-methyltransferase O RIMD111065_RS06595 PF18389 TrmO C-terminal domain RIMD111065_RS06615 PF00664 ABC transporter transmembrane region RIMD111065_RS06615 PF00005 ABC transporter RIMD111065_RS06620 PF00005 ABC transporter RIMD111065_RS06620 PF00664 ABC transporter transmembrane region RIMD111065_RS06635 PF00072 Response regulator receiver domain RIMD111065_RS06635 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS06645 PF03737 Aldolase/RraA RIMD111065_RS06660 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RIMD111065_RS06665 PF00588 SpoU rRNA Methylase family RIMD111065_RS06670 PF13840 ACT domain RIMD111065_RS06670 PF00742 Homoserine dehydrogenase RIMD111065_RS06670 PF03447 Homoserine dehydrogenase, NAD binding domain RIMD111065_RS06670 PF00696 Amino acid kinase family RIMD111065_RS06670 PF01842 ACT domain RIMD111065_RS06675 PF00288 GHMP kinases N terminal domain RIMD111065_RS06675 PF08544 GHMP kinases C terminal RIMD111065_RS06680 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS06680 PF14821 Threonine synthase N terminus RIMD111065_RS06705 PF01048 Phosphorylase superfamily RIMD111065_RS06720 PF01627 Hpt domain RIMD111065_RS06720 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS06720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS06720 PF00072 Response regulator receiver domain RIMD111065_RS06720 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS06720 PF00989 PAS fold RIMD111065_RS06725 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RIMD111065_RS06730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_RS06730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RIMD111065_RS06735 PF02690 Na+/Pi-cotransporter RIMD111065_RS06745 PF13520 Amino acid permease RIMD111065_RS06755 PF00324 Amino acid permease RIMD111065_RS06760 PF00202 Aminotransferase class-III RIMD111065_RS06765 PF00171 Aldehyde dehydrogenase family RIMD111065_RS06770 PF07883 Cupin domain RIMD111065_RS06770 PF01381 Helix-turn-helix RIMD111065_RS06775 PF01266 FAD dependent oxidoreductase RIMD111065_RS06790 PF05656 Protein of unknown function (DUF805) RIMD111065_RS06805 PF00816 H-NS histone family RIMD111065_RS06815 PF00793 DAHP synthetase I family RIMD111065_RS06820 PF08021 Siderophore-interacting FAD-binding domain RIMD111065_RS06820 PF04954 Siderophore-interacting protein RIMD111065_RS06825 PF02321 Outer membrane efflux protein RIMD111065_RS06830 PF12704 MacB-like periplasmic core domain RIMD111065_RS06830 PF02687 FtsX-like permease family RIMD111065_RS06830 PF00005 ABC transporter RIMD111065_RS06835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS06845 PF02833 DHHA2 domain RIMD111065_RS06845 PF01368 DHH family RIMD111065_RS06850 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_RS06855 PF01513 ATP-NAD kinase RIMD111065_RS06860 PF01025 GrpE RIMD111065_RS06865 PF00012 Hsp70 protein RIMD111065_RS06870 PF00226 DnaJ domain RIMD111065_RS06870 PF01556 DnaJ C terminal domain RIMD111065_RS06870 PF00684 DnaJ central domain RIMD111065_RS06875 PF02264 LamB porin RIMD111065_RS06875 PF11471 Maltoporin periplasmic N-terminal extension RIMD111065_RS06880 PF00294 pfkB family carbohydrate kinase RIMD111065_RS06885 PF02378 Phosphotransferase system, EIIC RIMD111065_RS06885 PF00367 phosphotransferase system, EIIB RIMD111065_RS06890 PF08244 Glycosyl hydrolases family 32 C terminal RIMD111065_RS06890 PF00251 Glycosyl hydrolases family 32 N-terminal domain RIMD111065_RS06895 PF13407 Periplasmic binding protein domain RIMD111065_RS06895 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS06900 PF02308 MgtC family RIMD111065_RS06915 PF01022 Bacterial regulatory protein, arsR family RIMD111065_RS06920 PF04143 Sulphur transport RIMD111065_RS06935 PF00873 AcrB/AcrD/AcrF family RIMD111065_RS06940 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS06940 PF00563 EAL domain RIMD111065_RS06940 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS06945 PF03099 Biotin/lipoate A/B protein ligase family RIMD111065_RS06945 PF10437 Bacterial lipoate protein ligase C-terminus RIMD111065_RS06965 PF00873 AcrB/AcrD/AcrF family RIMD111065_RS06970 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_RS06970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS06980 PF00873 AcrB/AcrD/AcrF family RIMD111065_RS06985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS06990 PF03372 Endonuclease/Exonuclease/phosphatase family RIMD111065_RS07005 PF07690 Major Facilitator Superfamily RIMD111065_RS07010 PF02424 ApbE family RIMD111065_RS07015 PF00127 Copper binding proteins, plastocyanin/azurin family RIMD111065_RS07030 PF01156 Inosine-uridine preferring nucleoside hydrolase RIMD111065_RS07040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RIMD111065_RS07040 PF00034 Cytochrome c RIMD111065_RS07050 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RIMD111065_RS07050 PF06481 COX Aromatic Rich Motif RIMD111065_RS07055 PF00115 Cytochrome C and Quinol oxidase polypeptide I RIMD111065_RS07060 PF00510 Cytochrome c oxidase subunit III RIMD111065_RS07065 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RIMD111065_RS07070 PF01040 UbiA prenyltransferase family RIMD111065_RS07075 PF07690 Major Facilitator Superfamily RIMD111065_RS07085 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS07085 PF01627 Hpt domain RIMD111065_RS07085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS07085 PF00072 Response regulator receiver domain RIMD111065_RS07085 PF00672 HAMP domain RIMD111065_RS07090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_RS07100 PF00072 Response regulator receiver domain RIMD111065_RS07100 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS07105 PF03264 NapC/NirT cytochrome c family, N-terminal region RIMD111065_RS07110 PF01568 Molydopterin dinucleotide binding domain RIMD111065_RS07110 PF00384 Molybdopterin oxidoreductase RIMD111065_RS07110 PF18364 Molybdopterin oxidoreductase N-terminal domain RIMD111065_RS07115 PF02613 Nitrate reductase delta subunit RIMD111065_RS07155 PF04002 RadC-like JAB domain RIMD111065_RS07190 PF03466 LysR substrate binding domain RIMD111065_RS07190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS07205 PF00696 Amino acid kinase family RIMD111065_RS07210 PF06545 Protein of unknown function (DUF1116) RIMD111065_RS07215 PF02629 CoA binding domain RIMD111065_RS07215 PF00549 CoA-ligase RIMD111065_RS07220 PF00857 Isochorismatase family RIMD111065_RS07235 PF05930 Prophage CP4-57 regulatory protein (AlpA) RIMD111065_RS07260 PF07670 Nucleoside recognition RIMD111065_RS07260 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_RS07260 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_RS07335 PF00290 Tryptophan synthase alpha chain RIMD111065_RS07340 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS07345 PF00218 Indole-3-glycerol phosphate synthase RIMD111065_RS07345 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RIMD111065_RS07350 PF00591 Glycosyl transferase family, a/b domain RIMD111065_RS07350 PF02885 Glycosyl transferase family, helical bundle domain RIMD111065_RS07355 PF00591 Glycosyl transferase family, a/b domain RIMD111065_RS07355 PF02885 Glycosyl transferase family, helical bundle domain RIMD111065_RS07355 PF00117 Glutamine amidotransferase class-I RIMD111065_RS07360 PF04715 Anthranilate synthase component I, N terminal region RIMD111065_RS07360 PF00425 chorismate binding enzyme RIMD111065_RS07365 PF02811 PHP domain RIMD111065_RS07370 PF01300 Telomere recombination RIMD111065_RS07375 PF02616 Segregation and condensation protein ScpA RIMD111065_RS07380 PF04079 Segregation and condensation complex subunit ScpB RIMD111065_RS07385 PF01479 S4 domain RIMD111065_RS07385 PF00849 RNA pseudouridylate synthase RIMD111065_RS07405 PF08361 MAATS-type transcriptional repressor, C-terminal region RIMD111065_RS07405 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS07410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS07410 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_RS07415 PF00873 AcrB/AcrD/AcrF family RIMD111065_RS07420 PF02321 Outer membrane efflux protein RIMD111065_RS07425 PF16363 GDP-mannose 4,6 dehydratase RIMD111065_RS07430 PF04321 RmlD substrate binding domain RIMD111065_RS07435 PF00483 Nucleotidyl transferase RIMD111065_RS07440 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RIMD111065_RS07445 PF00535 Glycosyl transferase family 2 RIMD111065_RS07455 PF00005 ABC transporter RIMD111065_RS07460 PF05045 Rhamnan synthesis protein F RIMD111065_RS07460 PF14307 Glycosyltransferase WbsX RIMD111065_RS07465 PF00535 Glycosyl transferase family 2 RIMD111065_RS07470 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS07475 PF01507 Phosphoadenosine phosphosulfate reductase family RIMD111065_RS07480 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS07485 PF03600 Citrate transporter RIMD111065_RS07485 PF02080 TrkA-C domain RIMD111065_RS07500 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS07505 PF00953 Glycosyl transferase family 4 RIMD111065_RS07510 PF02719 Polysaccharide biosynthesis protein RIMD111065_RS07515 PF00953 Glycosyl transferase family 4 RIMD111065_RS07525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RIMD111065_RS07525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RIMD111065_RS07525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RIMD111065_RS07530 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS07555 PF02719 Polysaccharide biosynthesis protein RIMD111065_RS07555 PF08485 Polysaccharide biosynthesis protein C-terminal RIMD111065_RS07560 PF04321 RmlD substrate binding domain RIMD111065_RS07565 PF02350 UDP-N-acetylglucosamine 2-epimerase RIMD111065_RS07575 PF02563 Polysaccharide biosynthesis/export protein RIMD111065_RS07575 PF10531 SLBB domain RIMD111065_RS07575 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RIMD111065_RS07580 PF01451 Low molecular weight phosphotyrosine protein phosphatase RIMD111065_RS07585 PF13614 AAA domain RIMD111065_RS07585 PF13807 G-rich domain on putative tyrosine kinase RIMD111065_RS07585 PF02706 Chain length determinant protein RIMD111065_RS07595 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF RIMD111065_RS07600 PF06251 Capsule biosynthesis GfcC RIMD111065_RS07605 PF06082 Exopolysaccharide biosynthesis protein YbjH RIMD111065_RS07615 PF04337 Protein of unknown function, DUF480 RIMD111065_RS07620 PF04434 SWIM zinc finger RIMD111065_RS07620 PF00176 SNF2 family N-terminal domain RIMD111065_RS07620 PF00271 Helicase conserved C-terminal domain RIMD111065_RS07625 PF05472 DNA replication terminus site-binding protein (Ter protein) RIMD111065_RS07635 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RIMD111065_RS07640 PF00676 Dehydrogenase E1 component RIMD111065_RS07645 PF02779 Transketolase, pyrimidine binding domain RIMD111065_RS07645 PF02780 Transketolase, C-terminal domain RIMD111065_RS07650 PF02817 e3 binding domain RIMD111065_RS07650 PF00364 Biotin-requiring enzyme RIMD111065_RS07650 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RIMD111065_RS07655 PF00313 'Cold-shock' DNA-binding domain RIMD111065_RS07680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS07685 PF00892 EamA-like transporter family RIMD111065_RS07690 PF00455 DeoR C terminal sensor domain RIMD111065_RS07690 PF08220 DeoR-like helix-turn-helix domain RIMD111065_RS07695 PF02901 Pyruvate formate lyase-like RIMD111065_RS07695 PF01228 Glycine radical RIMD111065_RS07700 PF04055 Radical SAM superfamily RIMD111065_RS07705 PF00923 Transaldolase/Fructose-6-phosphate aldolase RIMD111065_RS07715 PF11871 Domain of unknown function (DUF3391) RIMD111065_RS07715 PF01966 HD domain RIMD111065_RS07720 PF01479 S4 domain RIMD111065_RS07720 PF00849 RNA pseudouridylate synthase RIMD111065_RS07730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS07735 PF12850 Calcineurin-like phosphoesterase superfamily domain RIMD111065_RS07750 PF13144 Chaperone for flagella basal body P-ring formation RIMD111065_RS07755 PF00072 Response regulator receiver domain RIMD111065_RS07755 PF01584 CheW-like domain RIMD111065_RS07760 PF01739 CheR methyltransferase, SAM binding domain RIMD111065_RS07760 PF03705 CheR methyltransferase, all-alpha domain RIMD111065_RS07765 PF00460 Flagella basal body rod protein RIMD111065_RS07770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_RS07770 PF00460 Flagella basal body rod protein RIMD111065_RS07780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_RS07780 PF00460 Flagella basal body rod protein RIMD111065_RS07780 PF07559 Flagellar basal body protein FlaE RIMD111065_RS07785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_RS07785 PF00460 Flagella basal body rod protein RIMD111065_RS07790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_RS07790 PF00460 Flagella basal body rod protein RIMD111065_RS07795 PF02107 Flagellar L-ring protein RIMD111065_RS07800 PF02119 Flagellar P-ring protein RIMD111065_RS07805 PF10135 Rod binding protein RIMD111065_RS07805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RIMD111065_RS07810 PF00460 Flagella basal body rod protein RIMD111065_RS07810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_RS07815 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_RS07820 PF01769 Divalent cation transporter RIMD111065_RS07820 PF03448 MgtE intracellular N domain RIMD111065_RS07820 PF00571 CBS domain RIMD111065_RS07825 PF02541 Ppx/GppA phosphatase family RIMD111065_RS07830 PF13090 Polyphosphate kinase C-terminal domain 2 RIMD111065_RS07830 PF17941 Polyphosphate kinase C-terminal domain 1 RIMD111065_RS07830 PF13089 Polyphosphate kinase N-terminal domain RIMD111065_RS07830 PF02503 Polyphosphate kinase middle domain RIMD111065_RS07835 PF01842 ACT domain RIMD111065_RS07845 PF06490 Flagellar regulatory protein FleQ RIMD111065_RS07845 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS07845 PF00158 Sigma-54 interaction domain RIMD111065_RS07850 PF13188 PAS domain RIMD111065_RS07850 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS07850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS07855 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS07855 PF00072 Response regulator receiver domain RIMD111065_RS07855 PF00158 Sigma-54 interaction domain RIMD111065_RS07860 PF01784 NIF3 (NGG1p interacting factor 3) RIMD111065_RS07865 PF00551 Formyl transferase RIMD111065_RS07870 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_RS07870 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_RS07885 PF00308 Bacterial dnaA protein RIMD111065_RS07890 PF00463 Isocitrate lyase family RIMD111065_RS07895 PF01274 Malate synthase RIMD111065_RS07910 PF14437 MafB19-like deaminase RIMD111065_RS07915 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS07920 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS07925 PF00005 ABC transporter RIMD111065_RS07930 PF01895 PhoU domain RIMD111065_RS07935 PF00571 CBS domain RIMD111065_RS07935 PF01595 Cyclin M transmembrane N-terminal domain RIMD111065_RS07935 PF03471 Transporter associated domain RIMD111065_RS07945 PF00809 Pterin binding enzyme RIMD111065_RS07945 PF02310 B12 binding domain RIMD111065_RS07945 PF02607 B12 binding domain RIMD111065_RS07945 PF02965 Vitamin B12 dependent methionine synthase, activation domain RIMD111065_RS07945 PF02574 Homocysteine S-methyltransferase RIMD111065_RS07950 PF13520 Amino acid permease RIMD111065_RS07955 PF04116 Fatty acid hydroxylase superfamily RIMD111065_RS07970 PF00005 ABC transporter RIMD111065_RS07975 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS07980 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS07985 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS07990 PF07690 Major Facilitator Superfamily RIMD111065_RS07995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS07995 PF07730 Histidine kinase RIMD111065_RS07995 PF05231 MASE1 RIMD111065_RS08000 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS08000 PF00072 Response regulator receiver domain RIMD111065_RS08005 PF14760 Rnk N-terminus RIMD111065_RS08005 PF01272 Transcription elongation factor, GreA/GreB, C-term RIMD111065_RS08020 PF00245 Alkaline phosphatase RIMD111065_RS08025 PF00245 Alkaline phosphatase RIMD111065_RS08030 PF01926 50S ribosome-binding GTPase RIMD111065_RS08035 PF07690 Major Facilitator Superfamily RIMD111065_RS08040 PF00850 Histone deacetylase domain RIMD111065_RS08050 PF06733 DEAD_2 RIMD111065_RS08050 PF13307 Helicase C-terminal domain RIMD111065_RS08055 PF13609 Gram-negative porin RIMD111065_RS08065 PF00155 Aminotransferase class I and II RIMD111065_RS08070 PF05872 Bacterial protein of unknown function (DUF853) RIMD111065_RS08085 PF03772 Competence protein RIMD111065_RS08085 PF00753 Metallo-beta-lactamase superfamily RIMD111065_RS08090 PF00005 ABC transporter RIMD111065_RS08090 PF00664 ABC transporter transmembrane region RIMD111065_RS08095 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RIMD111065_RS08100 PF03966 Trm112p-like protein RIMD111065_RS08105 PF02348 Cytidylyltransferase RIMD111065_RS08110 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS08110 PF00072 Response regulator receiver domain RIMD111065_RS08115 PF02151 UvrB/uvrC motif RIMD111065_RS08115 PF01541 GIY-YIG catalytic domain RIMD111065_RS08115 PF08459 UvrC Helix-hairpin-helix N-terminal RIMD111065_RS08120 PF01066 CDP-alcohol phosphatidyltransferase RIMD111065_RS08140 PF13426 PAS domain RIMD111065_RS08140 PF08447 PAS fold RIMD111065_RS08140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS08145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS08145 PF00672 HAMP domain RIMD111065_RS08150 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB RIMD111065_RS08155 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RIMD111065_RS08175 PF00037 4Fe-4S binding domain RIMD111065_RS08175 PF13247 4Fe-4S dicluster domain RIMD111065_RS08180 PF03916 Polysulphide reductase, NrfD RIMD111065_RS08185 PF00149 Calcineurin-like phosphoesterase RIMD111065_RS08195 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RIMD111065_RS08200 PF01406 tRNA synthetases class I (C) catalytic domain RIMD111065_RS08200 PF09190 DALR domain RIMD111065_RS08220 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS08220 PF13185 GAF domain RIMD111065_RS08250 PF01169 Uncharacterized protein family UPF0016 RIMD111065_RS08255 PF01253 Translation initiation factor SUI1 RIMD111065_RS08265 PF07664 Ferrous iron transport protein B C terminus RIMD111065_RS08265 PF02421 Ferrous iron transport protein B RIMD111065_RS08265 PF07670 Nucleoside recognition RIMD111065_RS08280 PF00483 Nucleotidyl transferase RIMD111065_RS08285 PF00437 Type II/IV secretion system protein RIMD111065_RS08295 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS08295 PF00072 Response regulator receiver domain RIMD111065_RS08295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS08295 PF00989 PAS fold RIMD111065_RS08295 PF01627 Hpt domain RIMD111065_RS08295 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS08300 PF01032 FecCD transport family RIMD111065_RS08305 PF00005 ABC transporter RIMD111065_RS08310 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS08315 PF00793 DAHP synthetase I family RIMD111065_RS08320 PF01219 Prokaryotic diacylglycerol kinase RIMD111065_RS08325 PF01842 ACT domain RIMD111065_RS08325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_RS08325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_RS08330 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RIMD111065_RS08335 PF01812 5-formyltetrahydrofolate cyclo-ligase family RIMD111065_RS08345 PF05173 Dihydrodipicolinate reductase, C-terminus RIMD111065_RS08345 PF01113 Dihydrodipicolinate reductase, N-terminus RIMD111065_RS08350 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RIMD111065_RS08350 PF00117 Glutamine amidotransferase class-I RIMD111065_RS08355 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RIMD111065_RS08355 PF02142 MGS-like domain RIMD111065_RS08355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RIMD111065_RS08360 PF08502 LeuA allosteric (dimerisation) domain RIMD111065_RS08360 PF00682 HMGL-like RIMD111065_RS08365 PF07759 Protein of unknown function (DUF1615) RIMD111065_RS08400 PF13302 Acetyltransferase (GNAT) domain RIMD111065_RS08405 PF00270 DEAD/DEAH box helicase RIMD111065_RS08405 PF00271 Helicase conserved C-terminal domain RIMD111065_RS08415 PF14521 Lysine-specific metallo-endopeptidase RIMD111065_RS08430 PF00376 MerR family regulatory protein RIMD111065_RS08430 PF09278 MerR, DNA binding RIMD111065_RS08445 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS08450 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS08455 PF00005 ABC transporter RIMD111065_RS08460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RIMD111065_RS08460 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS08465 PF04898 Glutamate synthase central domain RIMD111065_RS08465 PF00310 Glutamine amidotransferases class-II RIMD111065_RS08465 PF01645 Conserved region in glutamate synthase RIMD111065_RS08465 PF01493 GXGXG motif RIMD111065_RS08470 PF16199 Radical_SAM C-terminal domain RIMD111065_RS08470 PF04055 Radical SAM superfamily RIMD111065_RS08475 PF00664 ABC transporter transmembrane region RIMD111065_RS08475 PF00005 ABC transporter RIMD111065_RS08475 PF03412 Peptidase C39 family RIMD111065_RS08520 PF00324 Amino acid permease RIMD111065_RS08530 PF03618 Kinase/pyrophosphorylase RIMD111065_RS08535 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RIMD111065_RS08535 PF02896 PEP-utilising enzyme, TIM barrel domain RIMD111065_RS08535 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_RS08545 PF00933 Glycosyl hydrolase family 3 N terminal domain RIMD111065_RS08545 PF14310 Fibronectin type III-like domain RIMD111065_RS08545 PF01915 Glycosyl hydrolase family 3 C-terminal domain RIMD111065_RS08555 PF00082 Subtilase family RIMD111065_RS08555 PF01483 Proprotein convertase P-domain RIMD111065_RS08565 PF03180 NLPA lipoprotein RIMD111065_RS08570 PF01569 PAP2 superfamily RIMD111065_RS08575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_RS08575 PF11890 Domain of unknown function (DUF3410) RIMD111065_RS08575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_RS08580 PF02774 Semialdehyde dehydrogenase, dimerisation domain RIMD111065_RS08580 PF01118 Semialdehyde dehydrogenase, NAD binding domain RIMD111065_RS08590 PF01416 tRNA pseudouridine synthase RIMD111065_RS08595 PF17848 Acetyl-coA carboxylase zinc finger domain RIMD111065_RS08595 PF01039 Carboxyl transferase domain RIMD111065_RS08600 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_RS08600 PF08245 Mur ligase middle domain RIMD111065_RS08605 PF05036 Sporulation related domain RIMD111065_RS08610 PF04358 DsrC like protein RIMD111065_RS08615 PF12805 FUSC-like inner membrane protein yccS RIMD111065_RS08620 PF01027 Inhibitor of apoptosis-promoting Bax1 RIMD111065_RS08640 PF08019 Phosphoethanolamine transferase EptA/EptB RIMD111065_RS08640 PF00884 Sulfatase RIMD111065_RS08645 PF03706 Lysylphosphatidylglycerol synthase TM region RIMD111065_RS08645 PF09924 Uncharacterised conserved protein (DUF2156) RIMD111065_RS08655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS08655 PF08447 PAS fold RIMD111065_RS08660 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS08660 PF00563 EAL domain RIMD111065_RS08660 PF13426 PAS domain RIMD111065_RS08665 PF00849 RNA pseudouridylate synthase RIMD111065_RS08675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS08680 PF04209 homogentisate 1,2-dioxygenase RIMD111065_RS08690 PF14497 Glutathione S-transferase, C-terminal domain RIMD111065_RS08690 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_RS08695 PF13417 Glutathione S-transferase, N-terminal domain RIMD111065_RS08695 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_RS08705 PF13537 Glutamine amidotransferase domain RIMD111065_RS08705 PF00733 Asparagine synthase RIMD111065_RS08715 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS08715 PF02254 TrkA-N domain RIMD111065_RS08720 PF13344 Haloacid dehalogenase-like hydrolase RIMD111065_RS08725 PF00962 Adenosine/AMP deaminase RIMD111065_RS08730 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_RS08735 PF03471 Transporter associated domain RIMD111065_RS08735 PF03741 Integral membrane protein TerC family RIMD111065_RS08745 PF13183 4Fe-4S dicluster domain RIMD111065_RS08745 PF01565 FAD binding domain RIMD111065_RS08745 PF02913 FAD linked oxidases, C-terminal domain RIMD111065_RS08755 PF03061 Thioesterase superfamily RIMD111065_RS08760 PF00271 Helicase conserved C-terminal domain RIMD111065_RS08760 PF00270 DEAD/DEAH box helicase RIMD111065_RS08760 PF03880 DbpA RNA binding domain RIMD111065_RS08765 PF13726 Na+-H+ antiporter family RIMD111065_RS08765 PF03553 Na+/H+ antiporter family RIMD111065_RS08770 PF00929 Exonuclease RIMD111065_RS08775 PF00672 HAMP domain RIMD111065_RS08775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS08775 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS08780 PF00691 OmpA family RIMD111065_RS08780 PF18393 MotY N-terminal domain RIMD111065_RS08785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS08790 PF10576 Iron-sulfur binding domain of endonuclease III RIMD111065_RS08790 PF00633 Helix-hairpin-helix motif RIMD111065_RS08790 PF00730 HhH-GPD superfamily base excision DNA repair protein RIMD111065_RS08795 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_RS08800 PF04205 FMN-binding domain RIMD111065_RS08805 PF03116 NQR2, RnfD, RnfE family RIMD111065_RS08810 PF12838 4Fe-4S dicluster domain RIMD111065_RS08810 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RIMD111065_RS08810 PF13375 RnfC Barrel sandwich hybrid domain RIMD111065_RS08810 PF10531 SLBB domain RIMD111065_RS08815 PF04060 Putative Fe-S cluster RIMD111065_RS08820 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_RS08825 PF00892 EamA-like transporter family RIMD111065_RS08835 PF13426 PAS domain RIMD111065_RS08835 PF08447 PAS fold RIMD111065_RS08835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS08840 PF12241 Trans-2-enoyl-CoA reductase catalytic region RIMD111065_RS08840 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RIMD111065_RS08840 PF07055 Enoyl reductase FAD binding domain RIMD111065_RS08845 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_RS08850 PF00155 Aminotransferase class I and II RIMD111065_RS08860 PF00462 Glutaredoxin RIMD111065_RS08865 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RIMD111065_RS08870 PF00271 Helicase conserved C-terminal domain RIMD111065_RS08870 PF04851 Type III restriction enzyme, res subunit RIMD111065_RS08875 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_RS08875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS08880 PF11742 Protein of unknown function (DUF3302) RIMD111065_RS08885 PF02554 Carbon starvation protein CstA RIMD111065_RS08890 PF04397 LytTr DNA-binding domain RIMD111065_RS08890 PF00072 Response regulator receiver domain RIMD111065_RS08895 PF07694 5TMR of 5TMR-LYT RIMD111065_RS08895 PF06580 Histidine kinase RIMD111065_RS08900 PF01966 HD domain RIMD111065_RS08905 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS08905 PF00171 Aldehyde dehydrogenase family RIMD111065_RS08915 PF01914 MarC family integral membrane protein RIMD111065_RS08920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS08925 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS08930 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_RS08930 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS08935 PF00005 ABC transporter RIMD111065_RS08935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS08940 PF00005 ABC transporter RIMD111065_RS08940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS08945 PF03741 Integral membrane protein TerC family RIMD111065_RS08950 PF01168 Alanine racemase, N-terminal domain RIMD111065_RS08950 PF00842 Alanine racemase, C-terminal domain RIMD111065_RS08960 PF00375 Sodium:dicarboxylate symporter family RIMD111065_RS08975 PF01979 Amidohydrolase family RIMD111065_RS08985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS08985 PF00672 HAMP domain RIMD111065_RS08990 PF01230 HIT domain RIMD111065_RS09025 PF02355 Protein export membrane protein RIMD111065_RS09025 PF13721 SecD export protein N-terminal TM region RIMD111065_RS09025 PF07549 SecD/SecF GG Motif RIMD111065_RS09030 PF02355 Protein export membrane protein RIMD111065_RS09030 PF07549 SecD/SecF GG Motif RIMD111065_RS09040 PF05661 Protein of unknown function (DUF808) RIMD111065_RS09045 PF08439 Oligopeptidase F RIMD111065_RS09045 PF01432 Peptidase family M3 RIMD111065_RS09050 PF01432 Peptidase family M3 RIMD111065_RS09050 PF08439 Oligopeptidase F RIMD111065_RS09055 PF00860 Permease family RIMD111065_RS09060 PF05728 Uncharacterised protein family (UPF0227) RIMD111065_RS09065 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS09085 PF01906 Putative heavy-metal-binding RIMD111065_RS09095 PF10414 Sirohaem synthase dimerisation region RIMD111065_RS09095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_RS09095 PF14824 Sirohaem biosynthesis protein central RIMD111065_RS09100 PF13187 4Fe-4S dicluster domain RIMD111065_RS09100 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_RS09100 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_RS09105 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RIMD111065_RS09105 PF00175 Oxidoreductase NAD-binding domain RIMD111065_RS09110 PF17179 4Fe-4S dicluster domain RIMD111065_RS09115 PF01734 Patatin-like phospholipase RIMD111065_RS09120 PF02016 LD-carboxypeptidase N-terminal domain RIMD111065_RS09120 PF17676 LD-carboxypeptidase C-terminal domain RIMD111065_RS09125 PF00884 Sulfatase RIMD111065_RS09135 PF01842 ACT domain RIMD111065_RS09135 PF00696 Amino acid kinase family RIMD111065_RS09140 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS09140 PF00696 Amino acid kinase family RIMD111065_RS09145 PF01625 Peptide methionine sulfoxide reductase RIMD111065_RS09165 PF00561 alpha/beta hydrolase fold RIMD111065_RS09170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS09180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS09180 PF03466 LysR substrate binding domain RIMD111065_RS09185 PF02652 L-lactate permease RIMD111065_RS09190 PF02754 Cysteine-rich domain RIMD111065_RS09195 PF02589 LUD domain RIMD111065_RS09195 PF13183 4Fe-4S dicluster domain RIMD111065_RS09195 PF11870 Domain of unknown function (DUF3390) RIMD111065_RS09200 PF02589 LUD domain RIMD111065_RS09205 PF01565 FAD binding domain RIMD111065_RS09205 PF02913 FAD linked oxidases, C-terminal domain RIMD111065_RS09230 PF12704 MacB-like periplasmic core domain RIMD111065_RS09230 PF02687 FtsX-like permease family RIMD111065_RS09235 PF00005 ABC transporter RIMD111065_RS09245 PF07690 Major Facilitator Superfamily RIMD111065_RS09260 PF01593 Flavin containing amine oxidoreductase RIMD111065_RS09265 PF03239 Iron permease FTR1 family RIMD111065_RS09280 PF03350 Uncharacterized protein family, UPF0114 RIMD111065_RS09295 PF01740 STAS domain RIMD111065_RS09295 PF00916 Sulfate permease family RIMD111065_RS09315 PF01168 Alanine racemase, N-terminal domain RIMD111065_RS09315 PF00842 Alanine racemase, C-terminal domain RIMD111065_RS09320 PF00672 HAMP domain RIMD111065_RS09320 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS09320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS09325 PF00563 EAL domain RIMD111065_RS09325 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS09325 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS09330 PF01339 CheB methylesterase RIMD111065_RS09330 PF00072 Response regulator receiver domain RIMD111065_RS09335 PF03705 CheR methyltransferase, all-alpha domain RIMD111065_RS09335 PF01739 CheR methyltransferase, SAM binding domain RIMD111065_RS09340 PF01584 CheW-like domain RIMD111065_RS09345 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS09345 PF00672 HAMP domain RIMD111065_RS09345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS09350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS09350 PF02895 Signal transducing histidine kinase, homodimeric domain RIMD111065_RS09350 PF09078 CheY binding RIMD111065_RS09350 PF01584 CheW-like domain RIMD111065_RS09350 PF01627 Hpt domain RIMD111065_RS09360 PF00072 Response regulator receiver domain RIMD111065_RS09365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RIMD111065_RS09365 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RIMD111065_RS09370 PF13247 4Fe-4S dicluster domain RIMD111065_RS09375 PF03916 Polysulphide reductase, NrfD RIMD111065_RS09380 PF00374 Nickel-dependent hydrogenase RIMD111065_RS09385 PF01750 Hydrogenase maturation protease RIMD111065_RS09390 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE RIMD111065_RS09395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS09400 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS09405 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS09405 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_RS09410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS09410 PF00005 ABC transporter RIMD111065_RS09415 PF00005 ABC transporter RIMD111065_RS09415 PF08402 TOBE domain RIMD111065_RS09420 PF02492 CobW/HypB/UreG, nucleotide-binding domain RIMD111065_RS09425 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RIMD111065_RS09430 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_RS09430 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_RS09435 PF01924 Hydrogenase formation hypA family RIMD111065_RS09440 PF01455 HupF/HypC family RIMD111065_RS09445 PF00708 Acylphosphatase RIMD111065_RS09445 PF17788 HypF Kae1-like domain RIMD111065_RS09445 PF01300 Telomere recombination RIMD111065_RS09445 PF07503 HypF finger RIMD111065_RS09450 PF09106 Elongation factor SelB, winged helix RIMD111065_RS09450 PF09107 Elongation factor SelB, winged helix RIMD111065_RS09450 PF09105 Elongation factor SelB, winged helix RIMD111065_RS09450 PF03144 Elongation factor Tu domain 2 RIMD111065_RS09450 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS09455 PF12390 Selenocysteine synthase N terminal RIMD111065_RS09455 PF03841 L-seryl-tRNA selenium transferase RIMD111065_RS09465 PF01750 Hydrogenase maturation protease RIMD111065_RS09470 PF07450 Formate hydrogenlyase maturation protein HycH RIMD111065_RS09475 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RIMD111065_RS09480 PF12838 4Fe-4S dicluster domain RIMD111065_RS09485 PF00374 Nickel-dependent hydrogenase RIMD111065_RS09485 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RIMD111065_RS09485 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RIMD111065_RS09490 PF00146 NADH dehydrogenase RIMD111065_RS09495 PF00361 Proton-conducting membrane transporter RIMD111065_RS09500 PF00037 4Fe-4S binding domain RIMD111065_RS09500 PF12798 4Fe-4S binding domain RIMD111065_RS09505 PF02705 K+ potassium transporter RIMD111065_RS09515 PF13247 4Fe-4S dicluster domain RIMD111065_RS09515 PF12800 4Fe-4S binding domain RIMD111065_RS09530 PF00158 Sigma-54 interaction domain RIMD111065_RS09530 PF01590 GAF domain RIMD111065_RS09530 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS09535 PF02634 FdhD/NarQ family RIMD111065_RS09540 PF13662 Toprim domain RIMD111065_RS09540 PF02132 RecR protein RIMD111065_RS09545 PF00183 Hsp90 protein RIMD111065_RS09545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS09550 PF05191 Adenylate kinase, active site lid RIMD111065_RS09555 PF00762 Ferrochelatase RIMD111065_RS09565 PF00294 pfkB family carbohydrate kinase RIMD111065_RS09580 PF00563 EAL domain RIMD111065_RS09580 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS09580 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS09585 PF00483 Nucleotidyl transferase RIMD111065_RS09595 PF07273 Protein of unknown function (DUF1439) RIMD111065_RS09600 PF00425 chorismate binding enzyme RIMD111065_RS09605 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS09605 PF00501 AMP-binding enzyme RIMD111065_RS09610 PF00550 Phosphopantetheine attachment site RIMD111065_RS09610 PF00857 Isochorismatase family RIMD111065_RS09615 PF00501 AMP-binding enzyme RIMD111065_RS09615 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS09615 PF00975 Thioesterase domain RIMD111065_RS09615 PF00668 Condensation domain RIMD111065_RS09615 PF00550 Phosphopantetheine attachment site RIMD111065_RS09625 PF00501 AMP-binding enzyme RIMD111065_RS09625 PF00550 Phosphopantetheine attachment site RIMD111065_RS09625 PF07993 Male sterility protein RIMD111065_RS09625 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS09625 PF00668 Condensation domain RIMD111065_RS09630 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS09630 PF00550 Phosphopantetheine attachment site RIMD111065_RS09630 PF00668 Condensation domain RIMD111065_RS09630 PF00975 Thioesterase domain RIMD111065_RS09630 PF00501 AMP-binding enzyme RIMD111065_RS09635 PF01497 Periplasmic binding protein RIMD111065_RS09640 PF17837 4'-phosphopantetheinyl transferase N-terminal domain RIMD111065_RS09640 PF01648 4'-phosphopantetheinyl transferase superfamily RIMD111065_RS09645 PF00005 ABC transporter RIMD111065_RS09650 PF01032 FecCD transport family RIMD111065_RS09655 PF01032 FecCD transport family RIMD111065_RS09660 PF00593 TonB dependent receptor RIMD111065_RS09660 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS09675 PF11143 Protein of unknown function (DUF2919) RIMD111065_RS09680 PF01544 CorA-like Mg2+ transporter protein RIMD111065_RS09690 PF01012 Electron transfer flavoprotein domain RIMD111065_RS09695 PF00766 Electron transfer flavoprotein FAD-binding domain RIMD111065_RS09695 PF01012 Electron transfer flavoprotein domain RIMD111065_RS09700 PF00266 Aminotransferase class-V RIMD111065_RS09705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RIMD111065_RS09710 PF00793 DAHP synthetase I family RIMD111065_RS09715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS09715 PF00672 HAMP domain RIMD111065_RS09720 PF04055 Radical SAM superfamily RIMD111065_RS09725 PF02601 Exonuclease VII, large subunit RIMD111065_RS09725 PF13742 OB-fold nucleic acid binding domain RIMD111065_RS09730 PF00892 EamA-like transporter family RIMD111065_RS09735 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_RS09740 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS09750 PF00884 Sulfatase RIMD111065_RS09755 PF13186 Iron-sulfur cluster-binding domain RIMD111065_RS09755 PF04055 Radical SAM superfamily RIMD111065_RS09765 PF02705 K+ potassium transporter RIMD111065_RS09775 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_RS09775 PF00571 CBS domain RIMD111065_RS09780 PF00117 Glutamine amidotransferase class-I RIMD111065_RS09780 PF00958 GMP synthase C terminal domain RIMD111065_RS09780 PF02540 NAD synthase RIMD111065_RS09800 PF12833 Helix-turn-helix domain RIMD111065_RS09800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RIMD111065_RS09800 PF02805 Metal binding domain of Ada RIMD111065_RS09800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RIMD111065_RS09815 PF05724 Thiopurine S-methyltransferase (TPMT) RIMD111065_RS09820 PF05193 Peptidase M16 inactive domain RIMD111065_RS09820 PF00675 Insulinase (Peptidase family M16) RIMD111065_RS09825 PF00300 Histidine phosphatase superfamily (branch 1) RIMD111065_RS09835 PF00892 EamA-like transporter family RIMD111065_RS09840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS09845 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RIMD111065_RS09850 PF00271 Helicase conserved C-terminal domain RIMD111065_RS09850 PF00270 DEAD/DEAH box helicase RIMD111065_RS09850 PF03461 TRCF domain RIMD111065_RS09850 PF02559 CarD-like/TRCF domain RIMD111065_RS09850 PF17757 UvrB interaction domain RIMD111065_RS09860 PF12704 MacB-like periplasmic core domain RIMD111065_RS09860 PF02687 FtsX-like permease family RIMD111065_RS09865 PF00005 ABC transporter RIMD111065_RS09870 PF02687 FtsX-like permease family RIMD111065_RS09870 PF12704 MacB-like periplasmic core domain RIMD111065_RS09885 PF05697 Bacterial trigger factor protein (TF) RIMD111065_RS09885 PF05698 Bacterial trigger factor protein (TF) C-terminus RIMD111065_RS09885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_RS09890 PF00574 Clp protease RIMD111065_RS09895 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_RS09895 PF06689 ClpX C4-type zinc finger RIMD111065_RS09895 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_RS09900 PF02190 ATP-dependent protease La (LON) substrate-binding domain RIMD111065_RS09900 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS09900 PF05362 Lon protease (S16) C-terminal proteolytic domain RIMD111065_RS09905 PF00216 Bacterial DNA-binding protein RIMD111065_RS09910 PF13145 PPIC-type PPIASE domain RIMD111065_RS09915 PF00005 ABC transporter RIMD111065_RS09915 PF12848 ABC transporter RIMD111065_RS09920 PF00474 Sodium:solute symporter family RIMD111065_RS09925 PF04341 Protein of unknown function, DUF485 RIMD111065_RS09940 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS09970 PF01235 Sodium:alanine symporter family RIMD111065_RS09980 PF06167 Glucose-regulated metallo-peptidase M90 RIMD111065_RS09985 PF01184 GPR1/FUN34/yaaH family RIMD111065_RS10000 PF09278 MerR, DNA binding RIMD111065_RS10000 PF00376 MerR family regulatory protein RIMD111065_RS10005 PF00682 HMGL-like RIMD111065_RS10010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RIMD111065_RS10010 PF00364 Biotin-requiring enzyme RIMD111065_RS10010 PF00289 Biotin carboxylase, N-terminal domain RIMD111065_RS10010 PF02785 Biotin carboxylase C-terminal domain RIMD111065_RS10015 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS10020 PF01039 Carboxyl transferase domain RIMD111065_RS10025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_RS10025 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_RS10025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_RS10030 PF00171 Aldehyde dehydrogenase family RIMD111065_RS10035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_RS10035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_RS10035 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_RS10040 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS10045 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS10050 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RIMD111065_RS10050 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RIMD111065_RS10060 PF13520 Amino acid permease RIMD111065_RS10065 PF01925 Sulfite exporter TauE/SafE RIMD111065_RS10150 PF13188 PAS domain RIMD111065_RS10150 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS10150 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS10150 PF00563 EAL domain RIMD111065_RS10155 PF03466 LysR substrate binding domain RIMD111065_RS10155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS10160 PF00232 Glycosyl hydrolase family 1 RIMD111065_RS10165 PF13188 PAS domain RIMD111065_RS10165 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS10165 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS10165 PF00563 EAL domain RIMD111065_RS10175 PF01966 HD domain RIMD111065_RS10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS10185 PF03466 LysR substrate binding domain RIMD111065_RS10190 PF01261 Xylose isomerase-like TIM barrel RIMD111065_RS10200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS10200 PF03466 LysR substrate binding domain RIMD111065_RS10210 PF03279 Bacterial lipid A biosynthesis acyltransferase RIMD111065_RS10215 PF03279 Bacterial lipid A biosynthesis acyltransferase RIMD111065_RS10230 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS10230 PF17151 Periplasmic sensor domain RIMD111065_RS10240 PF00136 DNA polymerase family B RIMD111065_RS10240 PF03104 DNA polymerase family B, exonuclease domain RIMD111065_RS10270 PF01554 MatE RIMD111065_RS10275 PF06786 Uncharacterised protein family (UPF0253) RIMD111065_RS10280 PF00677 Lumazine binding domain RIMD111065_RS10290 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS10295 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS10295 PF02222 ATP-grasp domain RIMD111065_RS10300 PF00892 EamA-like transporter family RIMD111065_RS10305 PF02525 Flavodoxin-like fold RIMD111065_RS10330 PF13509 S1 domain RIMD111065_RS10330 PF17783 CvfB-like winged helix domain RIMD111065_RS10340 PF04269 Protein of unknown function, DUF440 RIMD111065_RS10345 PF00912 Transglycosylase RIMD111065_RS10350 PF04269 Protein of unknown function, DUF440 RIMD111065_RS10355 PF03776 Septum formation topological specificity factor MinE RIMD111065_RS10360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RIMD111065_RS10365 PF03775 Septum formation inhibitor MinC, C-terminal domain RIMD111065_RS10365 PF05209 Septum formation inhibitor MinC, N-terminal domain RIMD111065_RS10370 PF05166 YcgL domain RIMD111065_RS10375 PF13406 Transglycosylase SLT domain RIMD111065_RS10380 PF03315 Serine dehydratase beta chain RIMD111065_RS10380 PF03313 Serine dehydratase alpha chain RIMD111065_RS10385 PF03315 Serine dehydratase beta chain RIMD111065_RS10385 PF03313 Serine dehydratase alpha chain RIMD111065_RS10390 PF06865 Pyrimidine/purine nucleoside phosphorylase RIMD111065_RS10395 PF00375 Sodium:dicarboxylate symporter family RIMD111065_RS10400 PF00376 MerR family regulatory protein RIMD111065_RS10400 PF09278 MerR, DNA binding RIMD111065_RS10405 PF00108 Thiolase, N-terminal domain RIMD111065_RS10405 PF02803 Thiolase, C-terminal domain RIMD111065_RS10410 PF08668 HDOD domain RIMD111065_RS10410 PF00563 EAL domain RIMD111065_RS10415 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RIMD111065_RS10425 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RIMD111065_RS10435 PF04542 Sigma-70 region 2 RIMD111065_RS10435 PF08281 Sigma-70, region 4 RIMD111065_RS10460 PF01882 Protein of unknown function DUF58 RIMD111065_RS10465 PF07726 ATPase family associated with various cellular activities (AAA) RIMD111065_RS10465 PF17863 AAA lid domain RIMD111065_RS10470 PF02803 Thiolase, C-terminal domain RIMD111065_RS10470 PF00108 Thiolase, N-terminal domain RIMD111065_RS10475 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS10475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RIMD111065_RS10475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RIMD111065_RS10485 PF07152 YaeQ protein RIMD111065_RS10510 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS10510 PF00158 Sigma-54 interaction domain RIMD111065_RS10510 PF13188 PAS domain RIMD111065_RS10515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_RS10515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_RS10520 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS10525 PF01546 Peptidase family M20/M25/M40 RIMD111065_RS10525 PF07687 Peptidase dimerisation domain RIMD111065_RS10530 PF01979 Amidohydrolase family RIMD111065_RS10535 PF00696 Amino acid kinase family RIMD111065_RS10540 PF00892 EamA-like transporter family RIMD111065_RS10545 PF02625 XdhC and CoxI family RIMD111065_RS10545 PF13478 XdhC Rossmann domain RIMD111065_RS10555 PF12804 MobA-like NTP transferase domain RIMD111065_RS10560 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS10560 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RIMD111065_RS10565 PF01979 Amidohydrolase family RIMD111065_RS10570 PF00941 FAD binding domain in molybdopterin dehydrogenase RIMD111065_RS10575 PF01799 [2Fe-2S] binding domain RIMD111065_RS10575 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RIMD111065_RS10575 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RIMD111065_RS10580 PF00860 Permease family RIMD111065_RS10585 PF01979 Amidohydrolase family RIMD111065_RS10590 PF00860 Permease family RIMD111065_RS10595 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RIMD111065_RS10595 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RIMD111065_RS10600 PF00941 FAD binding domain in molybdopterin dehydrogenase RIMD111065_RS10600 PF03450 CO dehydrogenase flavoprotein C-terminal domain RIMD111065_RS10605 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS10605 PF01799 [2Fe-2S] binding domain RIMD111065_RS10615 PF05433 Glycine zipper 2TM domain RIMD111065_RS10625 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_RS10630 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS10630 PF00501 AMP-binding enzyme RIMD111065_RS10635 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RIMD111065_RS10635 PF01502 Phosphoribosyl-AMP cyclohydrolase RIMD111065_RS10640 PF00977 Histidine biosynthesis protein RIMD111065_RS10645 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS10645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS10645 PF01627 Hpt domain RIMD111065_RS10645 PF00072 Response regulator receiver domain RIMD111065_RS10650 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS10650 PF08448 PAS fold RIMD111065_RS10655 PF00072 Response regulator receiver domain RIMD111065_RS10660 PF00977 Histidine biosynthesis protein RIMD111065_RS10665 PF00117 Glutamine amidotransferase class-I RIMD111065_RS10670 PF00475 Imidazoleglycerol-phosphate dehydratase RIMD111065_RS10670 PF08645 Polynucleotide kinase 3 phosphatase RIMD111065_RS10675 PF00155 Aminotransferase class I and II RIMD111065_RS10680 PF00815 Histidinol dehydrogenase RIMD111065_RS10685 PF08029 HisG, C-terminal domain RIMD111065_RS10685 PF01634 ATP phosphoribosyltransferase RIMD111065_RS10695 PF13307 Helicase C-terminal domain RIMD111065_RS10695 PF04851 Type III restriction enzyme, res subunit RIMD111065_RS10700 PF00814 Glycoprotease family RIMD111065_RS10710 PF08241 Methyltransferase domain RIMD111065_RS10710 PF12697 Alpha/beta hydrolase family RIMD111065_RS10715 PF00501 AMP-binding enzyme RIMD111065_RS10715 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS10720 PF00570 HRDC domain RIMD111065_RS10720 PF01612 3'-5' exonuclease RIMD111065_RS10725 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS10735 PF01207 Dihydrouridine synthase (Dus) RIMD111065_RS10740 PF04304 Protein of unknown function (DUF454) RIMD111065_RS10745 PF00156 Phosphoribosyl transferase domain RIMD111065_RS10750 PF12170 DNA polymerase III tau subunit V interacting with alpha RIMD111065_RS10750 PF12169 DNA polymerase III subunits gamma and tau domain III RIMD111065_RS10750 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RIMD111065_RS10755 PF02575 YbaB/EbfC DNA-binding family RIMD111065_RS10760 PF12167 Arm DNA-binding domain RIMD111065_RS10760 PF00589 Phage integrase family RIMD111065_RS10795 PF09588 YqaJ-like viral recombinase domain RIMD111065_RS10895 PF13391 HNH endonuclease RIMD111065_RS10910 PF05772 NinB protein RIMD111065_RS11075 PF00072 Response regulator receiver domain RIMD111065_RS11075 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS11080 PF01368 DHH family RIMD111065_RS11080 PF00571 CBS domain RIMD111065_RS11080 PF01743 Poly A polymerase head domain RIMD111065_RS11080 PF02272 DHHA1 domain RIMD111065_RS11085 PF00270 DEAD/DEAH box helicase RIMD111065_RS11085 PF04408 Helicase associated domain (HA2) RIMD111065_RS11085 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RIMD111065_RS11085 PF00271 Helicase conserved C-terminal domain RIMD111065_RS11085 PF11898 Domain of unknown function (DUF3418) RIMD111065_RS11095 PF01386 Ribosomal L25p family RIMD111065_RS11100 PF00672 HAMP domain RIMD111065_RS11100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS11100 PF01627 Hpt domain RIMD111065_RS11100 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_RS11100 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS11100 PF00072 Response regulator receiver domain RIMD111065_RS11105 PF00072 Response regulator receiver domain RIMD111065_RS11110 PF00753 Metallo-beta-lactamase superfamily RIMD111065_RS11120 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_RS11120 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_RS11135 PF10672 S-adenosylmethionine-dependent methyltransferase RIMD111065_RS11135 PF17785 PUA-like domain RIMD111065_RS11140 PF07196 Flagellin hook IN motif RIMD111065_RS11140 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_RS11140 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_RS11145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS11145 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS11145 PF00672 HAMP domain RIMD111065_RS11150 PF00708 Acylphosphatase RIMD111065_RS11155 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_RS11155 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_RS11160 PF08264 Anticodon-binding domain of tRNA RIMD111065_RS11160 PF09334 tRNA synthetases class I (M) RIMD111065_RS11160 PF01588 Putative tRNA binding domain RIMD111065_RS11165 PF10609 NUBPL iron-transfer P-loop NTPase RIMD111065_RS11170 PF00485 Phosphoribulokinase / Uridine kinase family RIMD111065_RS11175 PF00692 dUTPase RIMD111065_RS11180 PF01384 Phosphate transporter family RIMD111065_RS11185 PF10150 Ribonuclease E/G family RIMD111065_RS11185 PF12111 Polyribonucleotide phosphorylase C terminal RIMD111065_RS11185 PF00575 S1 RNA binding domain RIMD111065_RS11190 PF01479 S4 domain RIMD111065_RS11190 PF00849 RNA pseudouridylate synthase RIMD111065_RS11195 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS11200 PF02545 Maf-like protein RIMD111065_RS11205 PF07690 Major Facilitator Superfamily RIMD111065_RS11210 PF03466 LysR substrate binding domain RIMD111065_RS11210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS11220 PF02620 Large ribosomal RNA subunit accumulation protein YceD RIMD111065_RS11225 PF01783 Ribosomal L32p protein family RIMD111065_RS11230 PF02504 Fatty acid synthesis protein RIMD111065_RS11235 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RIMD111065_RS11235 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RIMD111065_RS11240 PF00698 Acyl transferase domain RIMD111065_RS11250 PF00550 Phosphopantetheine attachment site RIMD111065_RS11255 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_RS11255 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_RS11260 PF01063 Amino-transferase class IV RIMD111065_RS11265 PF02618 YceG-like family RIMD111065_RS11270 PF02223 Thymidylate kinase RIMD111065_RS11275 PF09115 DNA polymerase III, delta subunit, C terminal RIMD111065_RS11280 PF01026 TatD related DNase RIMD111065_RS11285 PF00589 Phage integrase family RIMD111065_RS11295 PF01189 16S rRNA methyltransferase RsmB/F RIMD111065_RS11295 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RIMD111065_RS11295 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RIMD111065_RS11300 PF02470 MlaD protein RIMD111065_RS11305 PF04403 Paraquat-inducible protein A RIMD111065_RS11320 PF00285 Citrate synthase, C-terminal domain RIMD111065_RS11325 PF03972 MmgE/PrpD family RIMD111065_RS11340 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RIMD111065_RS11340 PF06974 Protein of unknown function (DUF1298) RIMD111065_RS11365 PF00106 short chain dehydrogenase RIMD111065_RS11375 PF07130 YebG protein RIMD111065_RS11385 PF05362 Lon protease (S16) C-terminal proteolytic domain RIMD111065_RS11385 PF13654 AAA domain RIMD111065_RS11390 PF07977 FabA-like domain RIMD111065_RS11395 PF04957 Ribosome modulation factor RIMD111065_RS11405 PF16326 ABC transporter C-terminal domain RIMD111065_RS11405 PF00005 ABC transporter RIMD111065_RS11405 PF12848 ABC transporter RIMD111065_RS11415 PF01170 Putative RNA methylase family UPF0020 RIMD111065_RS11415 PF10672 S-adenosylmethionine-dependent methyltransferase RIMD111065_RS11415 PF02926 THUMP domain RIMD111065_RS11420 PF07126 Cell-division protein ZapC RIMD111065_RS11425 PF01180 Dihydroorotate dehydrogenase RIMD111065_RS11430 PF05088 Bacterial NAD-glutamate dehydrogenase RIMD111065_RS11440 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RIMD111065_RS11440 PF11940 Domain of unknown function (DUF3458) Ig-like fold RIMD111065_RS11440 PF01433 Peptidase family M1 domain RIMD111065_RS11445 PF11818 C-terminal domain of tail specific protease (DUF3340) RIMD111065_RS11445 PF00595 PDZ domain RIMD111065_RS11445 PF03572 Peptidase family S41 RIMD111065_RS11445 PF17804 Tail specific protease N-terminal domain RIMD111065_RS11450 PF04352 ProQ/FINO family RIMD111065_RS11450 PF17516 ProQ C-terminal domain RIMD111065_RS11455 PF13185 GAF domain RIMD111065_RS11465 PF00115 Cytochrome C and Quinol oxidase polypeptide I RIMD111065_RS11480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RIMD111065_RS11480 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RIMD111065_RS11490 PF00403 Heavy-metal-associated domain RIMD111065_RS11505 PF13545 Crp-like helix-turn-helix domain RIMD111065_RS11505 PF00027 Cyclic nucleotide-binding domain RIMD111065_RS11510 PF00582 Universal stress protein family RIMD111065_RS11515 PF01171 PP-loop family RIMD111065_RS11530 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_RS11530 PF14497 Glutathione S-transferase, C-terminal domain RIMD111065_RS11535 PF05025 RbsD / FucU transport protein family RIMD111065_RS11540 PF00005 ABC transporter RIMD111065_RS11545 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_RS11550 PF13407 Periplasmic binding protein domain RIMD111065_RS11555 PF00294 pfkB family carbohydrate kinase RIMD111065_RS11560 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS11565 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS11565 PF00563 EAL domain RIMD111065_RS11565 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS11575 PF02146 Sir2 family RIMD111065_RS11590 PF00072 Response regulator receiver domain RIMD111065_RS11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS11590 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS11590 PF09456 RcsC Alpha-Beta-Loop (ABL) RIMD111065_RS11595 PF00216 Bacterial DNA-binding protein RIMD111065_RS11600 PF03484 tRNA synthetase B5 domain RIMD111065_RS11600 PF03483 B3/4 domain RIMD111065_RS11600 PF03147 Ferredoxin-fold anticodon binding domain RIMD111065_RS11600 PF01588 Putative tRNA binding domain RIMD111065_RS11600 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RIMD111065_RS11605 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RIMD111065_RS11605 PF01409 tRNA synthetases class II core domain (F) RIMD111065_RS11610 PF00453 Ribosomal protein L20 RIMD111065_RS11615 PF01632 Ribosomal protein L35 RIMD111065_RS11620 PF00707 Translation initiation factor IF-3, C-terminal domain RIMD111065_RS11620 PF05198 Translation initiation factor IF-3, N-terminal domain RIMD111065_RS11625 PF02824 TGS domain RIMD111065_RS11625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RIMD111065_RS11625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RIMD111065_RS11625 PF03129 Anticodon binding domain RIMD111065_RS11635 PF04055 Radical SAM superfamily RIMD111065_RS11645 PF03989 DNA gyrase C-terminal domain, beta-propeller RIMD111065_RS11645 PF00521 DNA gyrase/topoisomerase IV, subunit A RIMD111065_RS11655 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS11660 PF02867 Ribonucleotide reductase, barrel domain RIMD111065_RS11660 PF00317 Ribonucleotide reductase, all-alpha domain RIMD111065_RS11660 PF03477 ATP cone domain RIMD111065_RS11665 PF00268 Ribonucleotide reductase, small chain RIMD111065_RS11670 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS11675 PF03562 MltA specific insert domain RIMD111065_RS11675 PF06725 3D domain RIMD111065_RS11680 PF06945 Protein of unknown function (DUF1289) RIMD111065_RS11690 PF03613 PTS system mannose/fructose/sorbose family IID component RIMD111065_RS11695 PF03609 PTS system sorbose-specific iic component RIMD111065_RS11700 PF03830 PTS system sorbose subfamily IIB component RIMD111065_RS11700 PF03610 PTS system fructose IIA component RIMD111065_RS11715 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS11715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_RS11720 PF06560 Glucose-6-phosphate isomerase (GPI) RIMD111065_RS11725 PF02378 Phosphotransferase system, EIIC RIMD111065_RS11725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_RS11730 PF00294 pfkB family carbohydrate kinase RIMD111065_RS11735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_RS11735 PF00381 PTS HPr component phosphorylation site RIMD111065_RS11740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_RS11740 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS11745 PF03222 Tryptophan/tyrosine permease family RIMD111065_RS11760 PF00271 Helicase conserved C-terminal domain RIMD111065_RS11760 PF00270 DEAD/DEAH box helicase RIMD111065_RS11770 PF01264 Chorismate synthase RIMD111065_RS11775 PF05175 Methyltransferase small domain RIMD111065_RS11780 PF01713 Smr domain RIMD111065_RS11790 PF08448 PAS fold RIMD111065_RS11790 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS11795 PF00300 Histidine phosphatase superfamily (branch 1) RIMD111065_RS11810 PF08329 Chitinase A, N-terminal domain RIMD111065_RS11810 PF00704 Glycosyl hydrolases family 18 RIMD111065_RS11820 PF03831 PhnA domain RIMD111065_RS11820 PF08274 PhnA Zinc-Ribbon RIMD111065_RS11830 PF02567 Phenazine biosynthesis-like protein RIMD111065_RS11860 PF01327 Polypeptide deformylase RIMD111065_RS11875 PF03330 Lytic transglycolase RIMD111065_RS11875 PF05036 Sporulation related domain RIMD111065_RS11880 PF16330 MukB hinge domain RIMD111065_RS11880 PF04310 MukB N-terminal RIMD111065_RS11885 PF04288 MukE-like family RIMD111065_RS11890 PF03882 MukF winged-helix domain RIMD111065_RS11890 PF17193 MukF C-terminal domain RIMD111065_RS11890 PF17192 MukF middle domain RIMD111065_RS11895 PF13847 Methyltransferase domain RIMD111065_RS11900 PF02698 DUF218 domain RIMD111065_RS11905 PF00121 Triosephosphate isomerase RIMD111065_RS11910 PF00365 Phosphofructokinase RIMD111065_RS11915 PF07687 Peptidase dimerisation domain RIMD111065_RS11915 PF01546 Peptidase family M20/M25/M40 RIMD111065_RS11920 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS11925 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_RS11925 PF02789 Cytosol aminopeptidase family, N-terminal domain RIMD111065_RS11975 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_RS11975 PF00128 Alpha amylase, catalytic domain RIMD111065_RS11985 PF11398 Protein of unknown function (DUF2813) RIMD111065_RS11990 PF14525 AraC-binding-like domain RIMD111065_RS11990 PF12833 Helix-turn-helix domain RIMD111065_RS12000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS12000 PF03466 LysR substrate binding domain RIMD111065_RS12005 PF01925 Sulfite exporter TauE/SafE RIMD111065_RS12010 PF03942 DTW domain RIMD111065_RS12015 PF18029 Glyoxalase-like domain RIMD111065_RS12015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS12020 PF01820 D-ala D-ala ligase N-terminus RIMD111065_RS12020 PF07478 D-ala D-ala ligase C-terminus RIMD111065_RS12030 PF00255 Glutathione peroxidase RIMD111065_RS12035 PF00270 DEAD/DEAH box helicase RIMD111065_RS12035 PF00271 Helicase conserved C-terminal domain RIMD111065_RS12040 PF13673 Acetyltransferase (GNAT) domain RIMD111065_RS12050 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RIMD111065_RS12060 PF01928 CYTH domain RIMD111065_RS12070 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS12075 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS12080 PF03992 Antibiotic biosynthesis monooxygenase RIMD111065_RS12085 PF08543 Phosphomethylpyrimidine kinase RIMD111065_RS12105 PF00561 alpha/beta hydrolase fold RIMD111065_RS12105 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RIMD111065_RS12110 PF01575 MaoC like domain RIMD111065_RS12130 PF00005 ABC transporter RIMD111065_RS12130 PF00664 ABC transporter transmembrane region RIMD111065_RS12135 PF00664 ABC transporter transmembrane region RIMD111065_RS12135 PF00005 ABC transporter RIMD111065_RS12140 PF01627 Hpt domain RIMD111065_RS12140 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS12140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS12140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_RS12140 PF00672 HAMP domain RIMD111065_RS12140 PF00072 Response regulator receiver domain RIMD111065_RS12145 PF00085 Thioredoxin RIMD111065_RS12150 PF00939 Sodium:sulfate symporter transmembrane region RIMD111065_RS12155 PF00343 Carbohydrate phosphorylase RIMD111065_RS12175 PF04715 Anthranilate synthase component I, N terminal region RIMD111065_RS12175 PF00425 chorismate binding enzyme RIMD111065_RS12180 PF00293 NUDIX domain RIMD111065_RS12185 PF03222 Tryptophan/tyrosine permease family RIMD111065_RS12190 PF00375 Sodium:dicarboxylate symporter family RIMD111065_RS12195 PF00271 Helicase conserved C-terminal domain RIMD111065_RS12195 PF09382 RQC domain RIMD111065_RS12195 PF00270 DEAD/DEAH box helicase RIMD111065_RS12195 PF16124 RecQ zinc-binding RIMD111065_RS12195 PF00570 HRDC domain RIMD111065_RS12200 PF06798 PrkA serine protein kinase C-terminal domain RIMD111065_RS12200 PF08298 PrkA AAA domain RIMD111065_RS12205 PF04285 Protein of unknown function (DUF444) RIMD111065_RS12210 PF04293 SpoVR like protein RIMD111065_RS12215 PF07840 FadR C-terminal domain RIMD111065_RS12215 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS12220 PF06450 Bacterial Na+/H+ antiporter B (NhaB) RIMD111065_RS12225 PF02600 Disulfide bond formation protein DsbB RIMD111065_RS12230 PF09335 SNARE associated Golgi protein RIMD111065_RS12240 PF00271 Helicase conserved C-terminal domain RIMD111065_RS12240 PF04851 Type III restriction enzyme, res subunit RIMD111065_RS12240 PF02151 UvrB/uvrC motif RIMD111065_RS12240 PF12344 Ultra-violet resistance protein B RIMD111065_RS12240 PF17757 UvrB interaction domain RIMD111065_RS12250 PF06826 Predicted Permease Membrane Region RIMD111065_RS12250 PF02080 TrkA-C domain RIMD111065_RS12255 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS12255 PF01464 Transglycosylase SLT domain RIMD111065_RS12270 PF01970 Tripartite tricarboxylate transporter TctA family RIMD111065_RS12275 PF00072 Response regulator receiver domain RIMD111065_RS12275 PF08279 HTH domain RIMD111065_RS12275 PF12431 Transcriptional regulator RIMD111065_RS12280 PF00989 PAS fold RIMD111065_RS12280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS12280 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RIMD111065_RS12280 PF17203 Single cache domain 3 RIMD111065_RS12285 PF00480 ROK family RIMD111065_RS12285 PF01047 MarR family RIMD111065_RS12290 PF17200 Single Cache domain 2 RIMD111065_RS12290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS12290 PF00672 HAMP domain RIMD111065_RS12295 PF02810 SEC-C motif RIMD111065_RS12300 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_RS12300 PF01266 FAD dependent oxidoreductase RIMD111065_RS12305 PF00890 FAD binding domain RIMD111065_RS12310 PF13183 4Fe-4S dicluster domain RIMD111065_RS12310 PF02754 Cysteine-rich domain RIMD111065_RS12325 PF02335 Cytochrome c552 RIMD111065_RS12330 PF13435 Cytochrome c554 and c-prime RIMD111065_RS12330 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RIMD111065_RS12335 PF13247 4Fe-4S dicluster domain RIMD111065_RS12335 PF00037 4Fe-4S binding domain RIMD111065_RS12340 PF03916 Polysulphide reductase, NrfD RIMD111065_RS12345 PF01578 Cytochrome C assembly protein RIMD111065_RS12345 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RIMD111065_RS12350 PF08534 Redoxin RIMD111065_RS12355 PF03918 Cytochrome C biogenesis protein RIMD111065_RS12360 PF00293 NUDIX domain RIMD111065_RS12365 PF00768 D-alanyl-D-alanine carboxypeptidase RIMD111065_RS12370 PF01212 Beta-eliminating lyase RIMD111065_RS12380 PF04244 Deoxyribodipyrimidine photo-lyase-related protein RIMD111065_RS12385 PF01266 FAD dependent oxidoreductase RIMD111065_RS12395 PF07969 Amidohydrolase family RIMD111065_RS12405 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_RS12405 PF00571 CBS domain RIMD111065_RS12415 PF01717 Cobalamin-independent synthase, Catalytic domain RIMD111065_RS12415 PF08267 Cobalamin-independent synthase, N-terminal domain RIMD111065_RS12420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS12420 PF03466 LysR substrate binding domain RIMD111065_RS12430 PF00593 TonB dependent receptor RIMD111065_RS12430 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS12435 PF12833 Helix-turn-helix domain RIMD111065_RS12440 PF00106 short chain dehydrogenase RIMD111065_RS12445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS12445 PF03466 LysR substrate binding domain RIMD111065_RS12450 PF13460 NAD(P)H-binding RIMD111065_RS12460 PF01053 Cys/Met metabolism PLP-dependent enzyme RIMD111065_RS12465 PF05193 Peptidase M16 inactive domain RIMD111065_RS12465 PF00675 Insulinase (Peptidase family M16) RIMD111065_RS12470 PF01118 Semialdehyde dehydrogenase, NAD binding domain RIMD111065_RS12470 PF02774 Semialdehyde dehydrogenase, dimerisation domain RIMD111065_RS12475 PF00893 Small Multidrug Resistance protein RIMD111065_RS12480 PF18381 YcaO cyclodehydratase C-terminal domain RIMD111065_RS12480 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RIMD111065_RS12485 PF01226 Formate/nitrite transporter RIMD111065_RS12490 PF01228 Glycine radical RIMD111065_RS12490 PF02901 Pyruvate formate lyase-like RIMD111065_RS12500 PF00202 Aminotransferase class-III RIMD111065_RS12505 PF00266 Aminotransferase class-V RIMD111065_RS12510 PF07702 UTRA domain RIMD111065_RS12510 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS12520 PF00005 ABC transporter RIMD111065_RS12525 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS12535 PF03692 Putative zinc- or iron-chelating domain RIMD111065_RS12545 PF00549 CoA-ligase RIMD111065_RS12545 PF02629 CoA binding domain RIMD111065_RS12550 PF00549 CoA-ligase RIMD111065_RS12550 PF08442 ATP-grasp domain RIMD111065_RS12555 PF02817 e3 binding domain RIMD111065_RS12555 PF00364 Biotin-requiring enzyme RIMD111065_RS12555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RIMD111065_RS12560 PF16078 2-oxoglutarate dehydrogenase N-terminus RIMD111065_RS12560 PF00676 Dehydrogenase E1 component RIMD111065_RS12560 PF02779 Transketolase, pyrimidine binding domain RIMD111065_RS12560 PF16870 2-oxoglutarate dehydrogenase C-terminal RIMD111065_RS12565 PF13085 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS12570 PF02910 Fumarate reductase flavoprotein C-term RIMD111065_RS12570 PF00890 FAD binding domain RIMD111065_RS12575 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RIMD111065_RS12580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RIMD111065_RS12585 PF00285 Citrate synthase, C-terminal domain RIMD111065_RS12600 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_RS12600 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_RS12605 PF01266 FAD dependent oxidoreductase RIMD111065_RS12605 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RIMD111065_RS12615 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_RS12630 PF01863 Protein of unknown function DUF45 RIMD111065_RS12645 PF01197 Ribosomal protein L31 RIMD111065_RS12650 PF00444 Ribosomal protein L36 RIMD111065_RS12655 PF05726 Pirin C-terminal cupin domain RIMD111065_RS12655 PF02678 Pirin RIMD111065_RS12660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS12660 PF03466 LysR substrate binding domain RIMD111065_RS12665 PF12833 Helix-turn-helix domain RIMD111065_RS12665 PF02311 AraC-like ligand binding domain RIMD111065_RS12670 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_RS12675 PF00005 ABC transporter RIMD111065_RS12680 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_RS12685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RIMD111065_RS12690 PF00596 Class II Aldolase and Adducin N-terminal domain RIMD111065_RS12695 PF02610 L-arabinose isomerase RIMD111065_RS12695 PF11762 L-arabinose isomerase C-terminal domain RIMD111065_RS12725 PF00816 H-NS histone family RIMD111065_RS12750 PF13391 HNH endonuclease RIMD111065_RS12760 PF13439 Glycosyltransferase Family 4 RIMD111065_RS12760 PF00534 Glycosyl transferases group 1 RIMD111065_RS12825 PF13439 Glycosyltransferase Family 4 RIMD111065_RS12825 PF00534 Glycosyl transferases group 1 RIMD111065_RS12830 PF03552 Cellulose synthase RIMD111065_RS12830 PF00535 Glycosyl transferase family 2 RIMD111065_RS12830 PF07238 PilZ domain RIMD111065_RS12835 PF02397 Bacterial sugar transferase RIMD111065_RS12840 PF00534 Glycosyl transferases group 1 RIMD111065_RS12845 PF00211 Adenylate and Guanylate cyclase catalytic domain RIMD111065_RS12845 PF00072 Response regulator receiver domain RIMD111065_RS12875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS12875 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS12875 PF09308 LuxQ, periplasmic RIMD111065_RS12875 PF00072 Response regulator receiver domain RIMD111065_RS12885 PF00080 Copper/zinc superoxide dismutase (SODC) RIMD111065_RS12895 PF00199 Catalase RIMD111065_RS12895 PF06628 Catalase-related immune-responsive RIMD111065_RS12920 PF01048 Phosphorylase superfamily RIMD111065_RS12945 PF00929 Exonuclease RIMD111065_RS12945 PF08411 Exonuclease C-terminal RIMD111065_RS12960 PF03788 LrgA family RIMD111065_RS12965 PF04172 LrgB-like family RIMD111065_RS12970 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region RIMD111065_RS12970 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RIMD111065_RS12975 PF00501 AMP-binding enzyme RIMD111065_RS12980 PF08891 YfcL protein RIMD111065_RS12990 PF03741 Integral membrane protein TerC family RIMD111065_RS12995 PF00691 OmpA family RIMD111065_RS13000 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS13000 PF17152 Periplasmic sensor domain RIMD111065_RS13005 PF13689 YfiR/HmsC-like RIMD111065_RS13010 PF18024 Helix-turn-helix domain RIMD111065_RS13010 PF00158 Sigma-54 interaction domain RIMD111065_RS13020 PF01329 Pterin 4 alpha carbinolamine dehydratase RIMD111065_RS13025 PF00351 Biopterin-dependent aromatic amino acid hydroxylase RIMD111065_RS13030 PF05128 Domain of unknown function (DUF697) RIMD111065_RS13035 PF04317 YcjX-like family, DUF463 RIMD111065_RS13045 PF06667 Phage shock protein B RIMD111065_RS13050 PF04012 PspA/IM30 family RIMD111065_RS13055 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS13055 PF00158 Sigma-54 interaction domain RIMD111065_RS13060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS13065 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS13070 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_RS13070 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS13075 PF00005 ABC transporter RIMD111065_RS13075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS13080 PF00005 ABC transporter RIMD111065_RS13085 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RIMD111065_RS13090 PF00156 Phosphoribosyl transferase domain RIMD111065_RS13095 PF02674 Colicin V production protein RIMD111065_RS13100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RIMD111065_RS13100 PF02403 Seryl-tRNA synthetase N-terminal domain RIMD111065_RS13105 PF16193 AAA C-terminal domain RIMD111065_RS13105 PF12002 MgsA AAA+ ATPase C terminal RIMD111065_RS13105 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS13110 PF03548 Outer membrane lipoprotein carrier protein LolA RIMD111065_RS13115 PF01580 FtsK/SpoIIIE family RIMD111065_RS13115 PF17854 FtsK alpha domain RIMD111065_RS13115 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RIMD111065_RS13115 PF09397 Ftsk gamma domain RIMD111065_RS13120 PF01037 Lrp/AsnC ligand binding domain RIMD111065_RS13125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RIMD111065_RS13125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RIMD111065_RS13130 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS13135 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS13135 PF17158 Membrane-associated sensor, integral membrane domain RIMD111065_RS13140 PF05433 Glycine zipper 2TM domain RIMD111065_RS13145 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RIMD111065_RS13150 PF04377 Arginine-tRNA-protein transferase, C terminus RIMD111065_RS13150 PF04376 Arginine-tRNA-protein transferase, N terminus RIMD111065_RS13155 PF01176 Translation initiation factor 1A / IF-1 RIMD111065_RS13160 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_RS13160 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_RS13160 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS13160 PF17871 AAA lid domain RIMD111065_RS13160 PF02861 Clp amino terminal domain, pathogenicity island component RIMD111065_RS13165 PF02617 ATP-dependent Clp protease adaptor protein ClpS RIMD111065_RS13170 PF00313 'Cold-shock' DNA-binding domain RIMD111065_RS13175 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RIMD111065_RS13175 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RIMD111065_RS13210 PF04717 Type VI secretion system, phage-baseplate injector RIMD111065_RS13225 PF06761 Intracellular multiplication and human macrophage-killing RIMD111065_RS13225 PF14331 ImcF-related N-terminal domain RIMD111065_RS13225 PF06744 Type VI secretion protein IcmF C-terminal RIMD111065_RS13240 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS13240 PF00158 Sigma-54 interaction domain RIMD111065_RS13245 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_RS13245 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_RS13245 PF17871 AAA lid domain RIMD111065_RS13245 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_RS13255 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE RIMD111065_RS13275 PF05947 Type VI secretion system, TssF RIMD111065_RS13285 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath RIMD111065_RS13315 PF04717 Type VI secretion system, phage-baseplate injector RIMD111065_RS13320 PF05638 Type VI secretion system effector, Hcp RIMD111065_RS13330 PF10722 Putative bacterial sensory transduction regulator RIMD111065_RS13340 PF00265 Thymidine kinase RIMD111065_RS13345 PF03553 Na+/H+ antiporter family RIMD111065_RS13350 PF00816 H-NS histone family RIMD111065_RS13355 PF01923 Cobalamin adenosyltransferase RIMD111065_RS13360 PF12843 Putative quorum-sensing-regulated virulence factor RIMD111065_RS13365 PF04055 Radical SAM superfamily RIMD111065_RS13370 PF06508 Queuosine biosynthesis protein QueC RIMD111065_RS13385 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RIMD111065_RS13390 PF18073 Rubredoxin metal binding domain RIMD111065_RS13400 PF00216 Bacterial DNA-binding protein RIMD111065_RS13405 PF00575 S1 RNA binding domain RIMD111065_RS13410 PF02224 Cytidylate kinase RIMD111065_RS13415 PF00925 GTP cyclohydrolase II RIMD111065_RS13420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS13420 PF03466 LysR substrate binding domain RIMD111065_RS13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS13425 PF03466 LysR substrate binding domain RIMD111065_RS13430 PF07690 Major Facilitator Superfamily RIMD111065_RS13445 PF00881 Nitroreductase family RIMD111065_RS13450 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS13450 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS13450 PF13188 PAS domain RIMD111065_RS13450 PF00563 EAL domain RIMD111065_RS13460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS13460 PF03466 LysR substrate binding domain RIMD111065_RS13465 PF00072 Response regulator receiver domain RIMD111065_RS13475 PF01212 Beta-eliminating lyase RIMD111065_RS13490 PF00248 Aldo/keto reductase family RIMD111065_RS13495 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RIMD111065_RS13505 PF03411 Penicillin-insensitive murein endopeptidase RIMD111065_RS13515 PF04536 TPM domain RIMD111065_RS13530 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS13535 PF13677 Membrane MotB of proton-channel complex MotA/MotB RIMD111065_RS13535 PF00691 OmpA family RIMD111065_RS13540 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RIMD111065_RS13545 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RIMD111065_RS13550 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RIMD111065_RS13550 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RIMD111065_RS13560 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RIMD111065_RS13560 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RIMD111065_RS13565 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RIMD111065_RS13565 PF00384 Molybdopterin oxidoreductase RIMD111065_RS13565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_RS13570 PF00146 NADH dehydrogenase RIMD111065_RS13575 PF12838 4Fe-4S dicluster domain RIMD111065_RS13580 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RIMD111065_RS13585 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RIMD111065_RS13590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RIMD111065_RS13590 PF00361 Proton-conducting membrane transporter RIMD111065_RS13595 PF00361 Proton-conducting membrane transporter RIMD111065_RS13600 PF00361 Proton-conducting membrane transporter RIMD111065_RS13610 PF00072 Response regulator receiver domain RIMD111065_RS13615 PF01966 HD domain RIMD111065_RS13620 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_RS13620 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RIMD111065_RS13620 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RIMD111065_RS13625 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS13625 PF01464 Transglycosylase SLT domain RIMD111065_RS13630 PF07191 zinc-ribbons RIMD111065_RS13635 PF01926 50S ribosome-binding GTPase RIMD111065_RS13635 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RIMD111065_RS13640 PF13360 PQQ-like domain RIMD111065_RS13645 PF09976 Tetratricopeptide repeat-like domain RIMD111065_RS13650 PF03129 Anticodon binding domain RIMD111065_RS13650 PF13393 Histidyl-tRNA synthetase RIMD111065_RS13655 PF04551 GcpE protein RIMD111065_RS13660 PF13464 Domain of unknown function (DUF4115) RIMD111065_RS13670 PF04055 Radical SAM superfamily RIMD111065_RS13675 PF00334 Nucleoside diphosphate kinase RIMD111065_RS13680 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_RS13680 PF12404 Peptidase RIMD111065_RS13685 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_RS13685 PF12404 Peptidase RIMD111065_RS13690 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS13695 PF00012 Hsp70 protein RIMD111065_RS13700 PF07743 HSCB C-terminal oligomerisation domain RIMD111065_RS13705 PF01521 Iron-sulphur cluster biosynthesis RIMD111065_RS13710 PF01592 NifU-like N terminal domain RIMD111065_RS13715 PF00266 Aminotransferase class-V RIMD111065_RS13720 PF02082 Transcriptional regulator RIMD111065_RS13725 PF00588 SpoU rRNA Methylase family RIMD111065_RS13735 PF02036 SCP-2 sterol transfer family RIMD111065_RS13740 PF01136 Peptidase family U32 RIMD111065_RS13745 PF01136 Peptidase family U32 RIMD111065_RS13750 PF13181 Tetratricopeptide repeat RIMD111065_RS13750 PF07719 Tetratricopeptide repeat RIMD111065_RS13760 PF02355 Protein export membrane protein RIMD111065_RS13760 PF07549 SecD/SecF GG Motif RIMD111065_RS13765 PF13721 SecD export protein N-terminal TM region RIMD111065_RS13765 PF02355 Protein export membrane protein RIMD111065_RS13765 PF07549 SecD/SecF GG Motif RIMD111065_RS13770 PF02699 Preprotein translocase subunit RIMD111065_RS13775 PF01702 Queuine tRNA-ribosyltransferase RIMD111065_RS13780 PF02547 Queuosine biosynthesis protein RIMD111065_RS13785 PF00571 CBS domain RIMD111065_RS13790 PF00578 AhpC/TSA family RIMD111065_RS13790 PF10417 C-terminal domain of 1-Cys peroxiredoxin RIMD111065_RS13795 PF13192 Thioredoxin domain RIMD111065_RS13795 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS13800 PF07690 Major Facilitator Superfamily RIMD111065_RS13810 PF08241 Methyltransferase domain RIMD111065_RS13815 PF03960 ArsC family RIMD111065_RS13820 PF01758 Sodium Bile acid symporter family RIMD111065_RS13825 PF01022 Bacterial regulatory protein, arsR family RIMD111065_RS13835 PF00672 HAMP domain RIMD111065_RS13835 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS13835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS13840 PF02347 Glycine cleavage system P-protein RIMD111065_RS13845 PF01597 Glycine cleavage H-protein RIMD111065_RS13850 PF01571 Aminomethyltransferase folate-binding domain RIMD111065_RS13850 PF08669 Glycine cleavage T-protein C-terminal barrel domain RIMD111065_RS13855 PF01494 FAD binding domain RIMD111065_RS13860 PF01494 FAD binding domain RIMD111065_RS13865 PF03695 Uncharacterised protein family (UPF0149) RIMD111065_RS13870 PF05164 Cell division protein ZapA RIMD111065_RS13880 PF07690 Major Facilitator Superfamily RIMD111065_RS13885 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_RS13885 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_RS13895 PF00459 Inositol monophosphatase family RIMD111065_RS13900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS13900 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS13900 PF00672 HAMP domain RIMD111065_RS13905 PF02535 ZIP Zinc transporter RIMD111065_RS13915 PF01048 Phosphorylase superfamily RIMD111065_RS13925 PF01497 Periplasmic binding protein RIMD111065_RS13930 PF02719 Polysaccharide biosynthesis protein RIMD111065_RS13935 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RIMD111065_RS13950 PF00202 Aminotransferase class-III RIMD111065_RS13960 PF08666 SAF domain RIMD111065_RS13960 PF03102 NeuB family RIMD111065_RS13985 PF02561 Flagellar protein FliS RIMD111065_RS13990 PF07195 Flagellar hook-associated protein 2 C-terminus RIMD111065_RS13990 PF07196 Flagellin hook IN motif RIMD111065_RS13990 PF02465 Flagellar hook-associated protein 2 N-terminus RIMD111065_RS14000 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_RS14000 PF07196 Flagellin hook IN motif RIMD111065_RS14000 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_RS14010 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_RS14010 PF07196 Flagellin hook IN motif RIMD111065_RS14010 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_RS14015 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_RS14015 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_RS14020 PF03458 UPF0126 domain RIMD111065_RS14030 PF02926 THUMP domain RIMD111065_RS14030 PF02568 Thiamine biosynthesis protein (ThiI) RIMD111065_RS14040 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_RS14040 PF00912 Transglycosylase RIMD111065_RS14040 PF06832 Penicillin-Binding Protein C-terminus Family RIMD111065_RS14045 PF01835 MG2 domain RIMD111065_RS14045 PF17962 Bacterial macroglobulin domain 6 RIMD111065_RS14045 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RIMD111065_RS14045 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RIMD111065_RS14045 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RIMD111065_RS14045 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RIMD111065_RS14045 PF00207 Alpha-2-macroglobulin family RIMD111065_RS14045 PF07703 Alpha-2-macroglobulin bait region domain RIMD111065_RS14045 PF07678 A-macroglobulin TED domain RIMD111065_RS14050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_RS14050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS14055 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS14055 PF00563 EAL domain RIMD111065_RS14055 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS14060 PF04055 Radical SAM superfamily RIMD111065_RS14070 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS14075 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS14080 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS14085 PF00005 ABC transporter RIMD111065_RS14090 PF03956 Lysine exporter LysO RIMD111065_RS14095 PF01979 Amidohydrolase family RIMD111065_RS14100 PF04336 Acyl carrier protein phosphodiesterase RIMD111065_RS14115 PF03960 ArsC family RIMD111065_RS14120 PF00578 AhpC/TSA family RIMD111065_RS14125 PF01435 Peptidase family M48 RIMD111065_RS14125 PF13181 Tetratricopeptide repeat RIMD111065_RS14130 PF01206 Sulfurtransferase TusA RIMD111065_RS14135 PF01594 AI-2E family transporter RIMD111065_RS14140 PF00561 alpha/beta hydrolase fold RIMD111065_RS14145 PF03976 Polyphosphate kinase 2 (PPK2) RIMD111065_RS14150 PF00005 ABC transporter RIMD111065_RS14150 PF08402 TOBE domain RIMD111065_RS14155 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS14160 PF14785 Maltose transport system permease protein MalF P2 domain RIMD111065_RS14160 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS14165 PF01547 Bacterial extracellular solute-binding protein RIMD111065_RS14170 PF04245 37-kD nucleoid-associated bacterial protein RIMD111065_RS14175 PF07208 Protein of unknown function (DUF1414) RIMD111065_RS14180 PF00884 Sulfatase RIMD111065_RS14180 PF11893 Domain of unknown function (DUF3413) RIMD111065_RS14185 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS14185 PF00593 TonB dependent receptor RIMD111065_RS14190 PF00326 Prolyl oligopeptidase family RIMD111065_RS14190 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RIMD111065_RS14210 PF03974 Ecotin RIMD111065_RS14215 PF04219 Protein of unknown function, DUF RIMD111065_RS14220 PF03466 LysR substrate binding domain RIMD111065_RS14220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS14225 PF01817 Chorismate mutase type II RIMD111065_RS14225 PF02153 Prephenate dehydrogenase RIMD111065_RS14230 PF00793 DAHP synthetase I family RIMD111065_RS14235 PF03009 Glycerophosphoryl diester phosphodiesterase family RIMD111065_RS14240 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RIMD111065_RS14240 PF01266 FAD dependent oxidoreductase RIMD111065_RS14250 PF00455 DeoR C terminal sensor domain RIMD111065_RS14250 PF08220 DeoR-like helix-turn-helix domain RIMD111065_RS14255 PF07690 Major Facilitator Superfamily RIMD111065_RS14260 PF00230 Major intrinsic protein RIMD111065_RS14265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RIMD111065_RS14265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RIMD111065_RS14270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS14270 PF03466 LysR substrate binding domain RIMD111065_RS14300 PF00248 Aldo/keto reductase family RIMD111065_RS14305 PF07690 Major Facilitator Superfamily RIMD111065_RS14315 PF02322 Cytochrome bd terminal oxidase subunit II RIMD111065_RS14320 PF01654 Cytochrome bd terminal oxidase subunit I RIMD111065_RS14325 PF00155 Aminotransferase class I and II RIMD111065_RS14325 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS14330 PF04391 Protein of unknown function (DUF533) RIMD111065_RS14335 PF00892 EamA-like transporter family RIMD111065_RS14350 PF10689 Protein of unknown function (DUF2496) RIMD111065_RS14360 PF07690 Major Facilitator Superfamily RIMD111065_RS14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS14365 PF03466 LysR substrate binding domain RIMD111065_RS14375 PF07690 Major Facilitator Superfamily RIMD111065_RS14380 PF00849 RNA pseudouridylate synthase RIMD111065_RS14380 PF01479 S4 domain RIMD111065_RS14385 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RIMD111065_RS14385 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RIMD111065_RS14395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS14405 PF01844 HNH endonuclease RIMD111065_RS14410 PF00300 Histidine phosphatase superfamily (branch 1) RIMD111065_RS14420 PF03313 Serine dehydratase alpha chain RIMD111065_RS14425 PF01042 Endoribonuclease L-PSP RIMD111065_RS14435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS14435 PF00672 HAMP domain RIMD111065_RS14450 PF17810 Arginine decarboxylase helical bundle domain RIMD111065_RS14450 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RIMD111065_RS14450 PF17944 Arginine decarboxylase C-terminal helical extension RIMD111065_RS14460 PF07687 Peptidase dimerisation domain RIMD111065_RS14460 PF01546 Peptidase family M20/M25/M40 RIMD111065_RS14485 PF04264 YceI-like domain RIMD111065_RS14490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS14490 PF03466 LysR substrate binding domain RIMD111065_RS14500 PF01268 Formate--tetrahydrofolate ligase RIMD111065_RS14505 PF17200 Single Cache domain 2 RIMD111065_RS14505 PF00672 HAMP domain RIMD111065_RS14505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS14510 PF01227 GTP cyclohydrolase I RIMD111065_RS14515 PF00994 Probable molybdopterin binding domain RIMD111065_RS14515 PF03454 MoeA C-terminal region (domain IV) RIMD111065_RS14515 PF03453 MoeA N-terminal region (domain I and II) RIMD111065_RS14520 PF00899 ThiF family RIMD111065_RS14525 PF00561 alpha/beta hydrolase fold RIMD111065_RS14530 PF00005 ABC transporter RIMD111065_RS14530 PF03459 TOBE domain RIMD111065_RS14535 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS14545 PF02391 MoaE protein RIMD111065_RS14550 PF02597 ThiS family RIMD111065_RS14555 PF01967 MoaC family RIMD111065_RS14560 PF00994 Probable molybdopterin binding domain RIMD111065_RS14565 PF03264 NapC/NirT cytochrome c family, N-terminal region RIMD111065_RS14570 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RIMD111065_RS14575 PF13237 4Fe-4S dicluster domain RIMD111065_RS14575 PF12801 4Fe-4S binding domain RIMD111065_RS14580 PF12838 4Fe-4S dicluster domain RIMD111065_RS14580 PF12800 4Fe-4S binding domain RIMD111065_RS14585 PF01568 Molydopterin dinucleotide binding domain RIMD111065_RS14585 PF10518 TAT (twin-arginine translocation) pathway signal sequence RIMD111065_RS14585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_RS14585 PF00384 Molybdopterin oxidoreductase RIMD111065_RS14595 PF13187 4Fe-4S dicluster domain RIMD111065_RS14595 PF12800 4Fe-4S binding domain RIMD111065_RS14595 PF00037 4Fe-4S binding domain RIMD111065_RS14600 PF04055 Radical SAM superfamily RIMD111065_RS14600 PF06463 Molybdenum Cofactor Synthesis C RIMD111065_RS14605 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RIMD111065_RS14605 PF07730 Histidine kinase RIMD111065_RS14605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS14605 PF00672 HAMP domain RIMD111065_RS14610 PF00072 Response regulator receiver domain RIMD111065_RS14610 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS14620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS14620 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS14620 PF09456 RcsC Alpha-Beta-Loop (ABL) RIMD111065_RS14620 PF00072 Response regulator receiver domain RIMD111065_RS14630 PF01933 Uncharacterised protein family UPF0052 RIMD111065_RS14640 PF13230 Glutamine amidotransferases class-II RIMD111065_RS14645 PF13580 SIS domain RIMD111065_RS14650 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_RS14650 PF09317 Domain of unknown function (DUF1974) RIMD111065_RS14650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_RS14650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_RS14655 PF11849 Domain of unknown function (DUF3369) RIMD111065_RS14665 PF00929 Exonuclease RIMD111065_RS14670 PF00075 RNase H RIMD111065_RS14675 PF08241 Methyltransferase domain RIMD111065_RS14680 PF00753 Metallo-beta-lactamase superfamily RIMD111065_RS14680 PF16123 Hydroxyacylglutathione hydrolase C-terminus RIMD111065_RS14685 PF01464 Transglycosylase SLT domain RIMD111065_RS14685 PF01476 LysM domain RIMD111065_RS14690 PF03372 Endonuclease/Exonuclease/phosphatase family RIMD111065_RS14700 PF03061 Thioesterase superfamily RIMD111065_RS14710 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS14715 PF01464 Transglycosylase SLT domain RIMD111065_RS14715 PF14718 Soluble lytic murein transglycosylase L domain RIMD111065_RS14720 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS14720 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS14720 PF00563 EAL domain RIMD111065_RS14725 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RIMD111065_RS14745 PF04357 TamB, inner membrane protein subunit of TAM complex RIMD111065_RS14750 PF17243 POTRA domain TamA domain 1 RIMD111065_RS14750 PF07244 Surface antigen variable number repeat RIMD111065_RS14750 PF01103 Surface antigen RIMD111065_RS14765 PF01625 Peptide methionine sulfoxide reductase RIMD111065_RS14775 PF02627 Carboxymuconolactone decarboxylase family RIMD111065_RS14780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_RS14780 PF00403 Heavy-metal-associated domain RIMD111065_RS14780 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS14785 PF13416 Bacterial extracellular solute-binding protein RIMD111065_RS14795 PF00005 ABC transporter RIMD111065_RS14800 PF01066 CDP-alcohol phosphatidyltransferase RIMD111065_RS14805 PF13406 Transglycosylase SLT domain RIMD111065_RS14820 PF01047 MarR family RIMD111065_RS14830 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RIMD111065_RS14830 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RIMD111065_RS14830 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RIMD111065_RS14830 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RIMD111065_RS14835 PF17206 SeqA protein N-terminal domain RIMD111065_RS14835 PF03925 SeqA protein C-terminal domain RIMD111065_RS14840 PF12697 Alpha/beta hydrolase family RIMD111065_RS14850 PF01402 Ribbon-helix-helix protein, copG family RIMD111065_RS14855 PF00258 Flavodoxin RIMD111065_RS14865 PF01475 Ferric uptake regulator family RIMD111065_RS14870 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RIMD111065_RS14870 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_RS14875 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain RIMD111065_RS14875 PF03173 Putative carbohydrate binding domain RIMD111065_RS14875 PF00728 Glycosyl hydrolase family 20, catalytic domain RIMD111065_RS14875 PF02838 Glycosyl hydrolase family 20, domain 2 RIMD111065_RS14880 PF02378 Phosphotransferase system, EIIC RIMD111065_RS14880 PF00367 phosphotransferase system, EIIB RIMD111065_RS14880 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RIMD111065_RS14885 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RIMD111065_RS14890 PF01979 Amidohydrolase family RIMD111065_RS14895 PF01047 MarR family RIMD111065_RS14895 PF00480 ROK family RIMD111065_RS14900 PF08019 Phosphoethanolamine transferase EptA/EptB RIMD111065_RS14900 PF00884 Sulfatase RIMD111065_RS14905 PF01709 Transcriptional regulator RIMD111065_RS14910 PF01336 OB-fold nucleic acid binding domain RIMD111065_RS14910 PF00152 tRNA synthetases class II (D, K and N) RIMD111065_RS14910 PF02938 GAD domain RIMD111065_RS14915 PF01904 Protein of unknown function DUF72 RIMD111065_RS14920 PF13649 Methyltransferase domain RIMD111065_RS14925 PF08003 Protein of unknown function (DUF1698) RIMD111065_RS14945 PF00578 AhpC/TSA family RIMD111065_RS14945 PF10417 C-terminal domain of 1-Cys peroxiredoxin RIMD111065_RS14950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS14950 PF03466 LysR substrate binding domain RIMD111065_RS14955 PF07968 Leukocidin/Hemolysin toxin family RIMD111065_RS14955 PF12563 Hemolytic toxin N terminal RIMD111065_RS14960 PF00877 NlpC/P60 family RIMD111065_RS14970 PF00171 Aldehyde dehydrogenase family RIMD111065_RS14975 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS14975 PF08359 YsiA-like protein, C-terminal region RIMD111065_RS14985 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS14995 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS15015 PF01554 MatE RIMD111065_RS15040 PF10371 Domain of unknown function RIMD111065_RS15040 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RIMD111065_RS15040 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RIMD111065_RS15040 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RIMD111065_RS15040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_RS15045 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS15045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RIMD111065_RS15045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RIMD111065_RS15050 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS15050 PF03473 MOSC domain RIMD111065_RS15050 PF03476 MOSC N-terminal beta barrel domain RIMD111065_RS15050 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS15050 PF03473 MOSC domain RIMD111065_RS15050 PF03476 MOSC N-terminal beta barrel domain RIMD111065_RS15055 PF08447 PAS fold RIMD111065_RS15055 PF13426 PAS domain RIMD111065_RS15055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS15060 PF01435 Peptidase family M48 RIMD111065_RS15070 PF08241 Methyltransferase domain RIMD111065_RS15070 PF12697 Alpha/beta hydrolase family RIMD111065_RS15075 PF00155 Aminotransferase class I and II RIMD111065_RS15080 PF04055 Radical SAM superfamily RIMD111065_RS15080 PF06968 Biotin and Thiamin Synthesis associated domain RIMD111065_RS15085 PF00202 Aminotransferase class-III RIMD111065_RS15100 PF01336 OB-fold nucleic acid binding domain RIMD111065_RS15100 PF00152 tRNA synthetases class II (D, K and N) RIMD111065_RS15105 PF03605 Anaerobic c4-dicarboxylate membrane transporter RIMD111065_RS15115 PF07687 Peptidase dimerisation domain RIMD111065_RS15115 PF01546 Peptidase family M20/M25/M40 RIMD111065_RS15120 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_RS15130 PF03466 LysR substrate binding domain RIMD111065_RS15130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS15135 PF03960 ArsC family RIMD111065_RS15140 PF01546 Peptidase family M20/M25/M40 RIMD111065_RS15140 PF07687 Peptidase dimerisation domain RIMD111065_RS15145 PF02557 D-alanyl-D-alanine carboxypeptidase RIMD111065_RS15155 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS15155 PF02080 TrkA-C domain RIMD111065_RS15155 PF03471 Transporter associated domain RIMD111065_RS15165 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS15165 PF03471 Transporter associated domain RIMD111065_RS15165 PF02080 TrkA-C domain RIMD111065_RS15175 PF01810 LysE type translocator RIMD111065_RS15180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS15180 PF00672 HAMP domain RIMD111065_RS15185 PF07509 Protein of unknown function (DUF1523) RIMD111065_RS15200 PF01156 Inosine-uridine preferring nucleoside hydrolase RIMD111065_RS15205 PF00849 RNA pseudouridylate synthase RIMD111065_RS15210 PF01048 Phosphorylase superfamily RIMD111065_RS15215 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS15220 PF04355 SmpA / OmlA family RIMD111065_RS15225 PF13460 NAD(P)H-binding RIMD111065_RS15230 PF03658 RnfH family Ubiquitin RIMD111065_RS15235 PF03364 Polyketide cyclase / dehydrase and lipid transport RIMD111065_RS15240 PF01668 SmpB protein RIMD111065_RS15250 PF00589 Phage integrase family RIMD111065_RS15250 PF13356 Arm DNA-binding domain RIMD111065_RS15305 PF08463 EcoEI R protein C-terminal RIMD111065_RS15305 PF00271 Helicase conserved C-terminal domain RIMD111065_RS15305 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) RIMD111065_RS15305 PF04851 Type III restriction enzyme, res subunit RIMD111065_RS15310 PF02384 N-6 DNA Methylase RIMD111065_RS15310 PF12161 HsdM N-terminal domain RIMD111065_RS15315 PF01420 Type I restriction modification DNA specificity domain RIMD111065_RS15330 PF04471 Restriction endonuclease RIMD111065_RS15330 PF14338 Mrr N-terminal domain RIMD111065_RS15335 PF08463 EcoEI R protein C-terminal RIMD111065_RS15335 PF00271 Helicase conserved C-terminal domain RIMD111065_RS15335 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RIMD111065_RS15335 PF04851 Type III restriction enzyme, res subunit RIMD111065_RS15340 PF02384 N-6 DNA Methylase RIMD111065_RS15345 PF01420 Type I restriction modification DNA specificity domain RIMD111065_RS15350 PF04320 Protein with unknown function (DUF469) RIMD111065_RS15360 PF03466 LysR substrate binding domain RIMD111065_RS15360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS15365 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS15375 PF00180 Isocitrate/isopropylmalate dehydrogenase RIMD111065_RS15380 PF12833 Helix-turn-helix domain RIMD111065_RS15385 PF01238 Phosphomannose isomerase type I RIMD111065_RS15415 PF00155 Aminotransferase class I and II RIMD111065_RS15420 PF02378 Phosphotransferase system, EIIC RIMD111065_RS15420 PF00367 phosphotransferase system, EIIB RIMD111065_RS15425 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_RS15425 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS15430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_RS15430 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS15435 PF13411 MerR HTH family regulatory protein RIMD111065_RS15445 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS15465 PF02378 Phosphotransferase system, EIIC RIMD111065_RS15465 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_RS15465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_RS15470 PF07690 Major Facilitator Superfamily RIMD111065_RS15475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_RS15475 PF02378 Phosphotransferase system, EIIC RIMD111065_RS15475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_RS15485 PF00849 RNA pseudouridylate synthase RIMD111065_RS15490 PF00293 NUDIX domain RIMD111065_RS15500 PF04356 Protein of unknown function (DUF489) RIMD111065_RS15505 PF00206 Lyase RIMD111065_RS15505 PF08328 Adenylosuccinate lyase C-terminal RIMD111065_RS15510 PF08007 Cupin superfamily protein RIMD111065_RS15515 PF13508 Acetyltransferase (GNAT) domain RIMD111065_RS15525 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_RS15530 PF01243 Pyridoxamine 5'-phosphate oxidase RIMD111065_RS15530 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RIMD111065_RS15545 PF01029 NusB family RIMD111065_RS15545 PF01189 16S rRNA methyltransferase RsmB/F RIMD111065_RS15550 PF00462 Glutaredoxin RIMD111065_RS15555 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RIMD111065_RS15555 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RIMD111065_RS15560 PF04333 MlaA lipoprotein RIMD111065_RS15565 PF03918 Cytochrome C biogenesis protein RIMD111065_RS15570 PF03918 Cytochrome C biogenesis protein RIMD111065_RS15575 PF08534 Redoxin RIMD111065_RS15580 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RIMD111065_RS15580 PF01578 Cytochrome C assembly protein RIMD111065_RS15585 PF03100 CcmE RIMD111065_RS15590 PF04995 Heme exporter protein D (CcmD) RIMD111065_RS15595 PF01578 Cytochrome C assembly protein RIMD111065_RS15600 PF03379 CcmB protein RIMD111065_RS15605 PF00005 ABC transporter RIMD111065_RS15615 PF01584 CheW-like domain RIMD111065_RS15625 PF13614 AAA domain RIMD111065_RS15630 PF13677 Membrane MotB of proton-channel complex MotA/MotB RIMD111065_RS15630 PF00691 OmpA family RIMD111065_RS15635 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS15640 PF01339 CheB methylesterase RIMD111065_RS15640 PF00072 Response regulator receiver domain RIMD111065_RS15645 PF01627 Hpt domain RIMD111065_RS15645 PF02895 Signal transducing histidine kinase, homodimeric domain RIMD111065_RS15645 PF01584 CheW-like domain RIMD111065_RS15645 PF00072 Response regulator receiver domain RIMD111065_RS15645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS15650 PF04344 Chemotaxis phosphatase, CheZ RIMD111065_RS15655 PF00072 Response regulator receiver domain RIMD111065_RS15660 PF04539 Sigma-70 region 3 RIMD111065_RS15660 PF04545 Sigma-70, region 4 RIMD111065_RS15660 PF04542 Sigma-70 region 2 RIMD111065_RS15665 PF10609 NUBPL iron-transfer P-loop NTPase RIMD111065_RS15670 PF00448 SRP54-type protein, GTPase domain RIMD111065_RS15675 PF00771 FHIPEP family RIMD111065_RS15680 PF01312 FlhB HrpN YscU SpaS Family RIMD111065_RS15685 PF01311 Bacterial export proteins, family 1 RIMD111065_RS15690 PF01313 Bacterial export proteins, family 3 RIMD111065_RS15695 PF00813 FliP family RIMD111065_RS15700 PF04347 Flagellar biosynthesis protein, FliO RIMD111065_RS15705 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RIMD111065_RS15710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RIMD111065_RS15710 PF02154 Flagellar motor switch protein FliM RIMD111065_RS15730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_RS15730 PF18269 T3SS EscN ATPase C-terminal domain RIMD111065_RS15740 PF01706 FliG C-terminal domain RIMD111065_RS15740 PF14841 FliG middle domain RIMD111065_RS15740 PF14842 FliG N-terminal domain RIMD111065_RS15745 PF08345 Flagellar M-ring protein C-terminal RIMD111065_RS15745 PF01514 Secretory protein of YscJ/FliF family RIMD111065_RS15750 PF02049 Flagellar hook-basal body complex protein FliE RIMD111065_RS15760 PF00072 Response regulator receiver domain RIMD111065_RS15765 PF00919 Uncharacterized protein family UPF0004 RIMD111065_RS15765 PF04055 Radical SAM superfamily RIMD111065_RS15765 PF18693 TRAM domain RIMD111065_RS15775 PF07634 RtxA repeat RIMD111065_RS15775 PF16671 Actin cross-linking domain RIMD111065_RS15775 PF11713 Peptidase C80 family RIMD111065_RS15775 PF11647 Membrane Localization Domain RIMD111065_RS15775 PF12146 Serine aminopeptidase, S33 RIMD111065_RS15780 PF02794 RTX toxin acyltransferase family RIMD111065_RS15790 PF00005 ABC transporter RIMD111065_RS15790 PF03412 Peptidase C39 family RIMD111065_RS15790 PF00664 ABC transporter transmembrane region RIMD111065_RS15800 PF00664 ABC transporter transmembrane region RIMD111065_RS15800 PF00005 ABC transporter RIMD111065_RS15800 PF03412 Peptidase C39 family RIMD111065_RS15805 PF00072 Response regulator receiver domain RIMD111065_RS15805 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS15810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS15815 PF02685 Glucokinase RIMD111065_RS15820 PF01418 Helix-turn-helix domain, rpiR family RIMD111065_RS15820 PF01380 SIS domain RIMD111065_RS15825 PF02887 Pyruvate kinase, alpha/beta domain RIMD111065_RS15825 PF00224 Pyruvate kinase, barrel domain RIMD111065_RS15835 PF00873 AcrB/AcrD/AcrF family RIMD111065_RS15840 PF09317 Domain of unknown function (DUF1974) RIMD111065_RS15840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_RS15840 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_RS15840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_RS15845 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS15860 PF00384 Molybdopterin oxidoreductase RIMD111065_RS15865 PF02634 FdhD/NarQ family RIMD111065_RS15870 PF03466 LysR substrate binding domain RIMD111065_RS15870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS15890 PF00936 BMC domain RIMD111065_RS15895 PF00936 BMC domain RIMD111065_RS15900 PF00936 BMC domain RIMD111065_RS15905 PF00171 Aldehyde dehydrogenase family RIMD111065_RS15905 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS15915 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS15920 PF01228 Glycine radical RIMD111065_RS15920 PF02901 Pyruvate formate lyase-like RIMD111065_RS15925 PF04055 Radical SAM superfamily RIMD111065_RS15925 PF13187 4Fe-4S dicluster domain RIMD111065_RS15930 PF00936 BMC domain RIMD111065_RS15935 PF06130 Phosphate propanoyltransferase RIMD111065_RS15945 PF00893 Small Multidrug Resistance protein RIMD111065_RS15950 PF00893 Small Multidrug Resistance protein RIMD111065_RS15975 PF13088 BNR repeat-like domain RIMD111065_RS15975 PF09264 Vibrio cholerae sialidase, lectin insertion RIMD111065_RS15980 PF04074 YhcH/YjgK/YiaL RIMD111065_RS15985 PF00474 Sodium:solute symporter family RIMD111065_RS15990 PF00480 ROK family RIMD111065_RS15995 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RIMD111065_RS16000 PF01418 Helix-turn-helix domain, rpiR family RIMD111065_RS16000 PF01380 SIS domain RIMD111065_RS16005 PF00701 Dihydrodipicolinate synthetase family RIMD111065_RS16010 PF00141 Peroxidase RIMD111065_RS16015 PF00455 DeoR C terminal sensor domain RIMD111065_RS16015 PF08220 DeoR-like helix-turn-helix domain RIMD111065_RS16020 PF07690 Major Facilitator Superfamily RIMD111065_RS16025 PF07882 L-fucose isomerase, second N-terminal domain RIMD111065_RS16025 PF07881 L-fucose isomerase, first N-terminal domain RIMD111065_RS16025 PF02952 L-fucose isomerase, C-terminal domain RIMD111065_RS16030 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RIMD111065_RS16030 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RIMD111065_RS16040 PF05025 RbsD / FucU transport protein family RIMD111065_RS16045 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS16050 PF00005 ABC transporter RIMD111065_RS16050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_RS16055 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS16055 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_RS16060 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS16065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS16080 PF03734 L,D-transpeptidase catalytic domain RIMD111065_RS16080 PF01476 LysM domain RIMD111065_RS16080 PF17969 L,D-transpeptidase C-terminal domain RIMD111065_RS16090 PF01575 MaoC like domain RIMD111065_RS16095 PF05971 RNA methyltransferase RIMD111065_RS16100 PF00877 NlpC/P60 family RIMD111065_RS16105 PF01648 4'-phosphopantetheinyl transferase superfamily RIMD111065_RS16110 PF00085 Thioredoxin RIMD111065_RS16120 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RIMD111065_RS16125 PF00551 Formyl transferase RIMD111065_RS16125 PF01842 ACT domain RIMD111065_RS16135 PF13091 PLD-like domain RIMD111065_RS16135 PF13396 Phospholipase_D-nuclease N-terminal RIMD111065_RS16150 PF01551 Peptidase family M23 RIMD111065_RS16155 PF00128 Alpha amylase, catalytic domain RIMD111065_RS16160 PF01551 Peptidase family M23 RIMD111065_RS16160 PF10145 Phage-related minor tail protein RIMD111065_RS16160 PF01464 Transglycosylase SLT domain RIMD111065_RS16165 PF00230 Major intrinsic protein RIMD111065_RS16170 PF02075 Crossover junction endodeoxyribonuclease RuvC RIMD111065_RS16180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RIMD111065_RS16220 PF08497 Radical SAM N-terminal RIMD111065_RS16220 PF04055 Radical SAM superfamily RIMD111065_RS16220 PF11842 Domain of unknown function (DUF3362) RIMD111065_RS16230 PF00873 AcrB/AcrD/AcrF family RIMD111065_RS16235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS16235 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_RS16240 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS16245 PF01734 Patatin-like phospholipase RIMD111065_RS16250 PF00209 Sodium:neurotransmitter symporter family RIMD111065_RS16265 PF00691 OmpA family RIMD111065_RS16265 PF01389 OmpA-like transmembrane domain RIMD111065_RS16270 PF00691 OmpA family RIMD111065_RS16270 PF01389 OmpA-like transmembrane domain RIMD111065_RS16275 PF01389 OmpA-like transmembrane domain RIMD111065_RS16275 PF00691 OmpA family RIMD111065_RS16280 PF03949 Malic enzyme, NAD binding domain RIMD111065_RS16280 PF00390 Malic enzyme, N-terminal domain RIMD111065_RS16285 PF12833 Helix-turn-helix domain RIMD111065_RS16290 PF01554 MatE RIMD111065_RS16295 PF10692 Protein of unknown function (DUF2498) RIMD111065_RS16300 PF00072 Response regulator receiver domain RIMD111065_RS16300 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS16305 PF00860 Permease family RIMD111065_RS16315 PF01235 Sodium:alanine symporter family RIMD111065_RS16320 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RIMD111065_RS16320 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RIMD111065_RS16325 PF01699 Sodium/calcium exchanger protein RIMD111065_RS16330 PF08534 Redoxin RIMD111065_RS16340 PF00293 NUDIX domain RIMD111065_RS16360 PF00005 ABC transporter RIMD111065_RS16365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_RS16365 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RIMD111065_RS16375 PF03932 CutC family RIMD111065_RS16380 PF00480 ROK family RIMD111065_RS16390 PF01435 Peptidase family M48 RIMD111065_RS16395 PF12849 PBP superfamily domain RIMD111065_RS16400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS16400 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS16400 PF11808 Phosphate regulon sensor protein PhoR RIMD111065_RS16400 PF00989 PAS fold RIMD111065_RS16405 PF00072 Response regulator receiver domain RIMD111065_RS16405 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS16410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_RS16415 PF02515 CoA-transferase family III RIMD111065_RS16420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_RS16420 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_RS16420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_RS16425 PF01590 GAF domain RIMD111065_RS16425 PF00158 Sigma-54 interaction domain RIMD111065_RS16425 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS16430 PF00171 Aldehyde dehydrogenase family RIMD111065_RS16440 PF00892 EamA-like transporter family RIMD111065_RS16445 PF12431 Transcriptional regulator RIMD111065_RS16445 PF00072 Response regulator receiver domain RIMD111065_RS16450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS16450 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RIMD111065_RS16450 PF00989 PAS fold RIMD111065_RS16450 PF17203 Single cache domain 3 RIMD111065_RS16455 PF00390 Malic enzyme, N-terminal domain RIMD111065_RS16455 PF03949 Malic enzyme, NAD binding domain RIMD111065_RS16460 PF03390 2-hydroxycarboxylate transporter family RIMD111065_RS16470 PF01047 MarR family RIMD111065_RS16475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS16475 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_RS16500 PF01679 Proteolipid membrane potential modulator RIMD111065_RS16510 PF13597 Anaerobic ribonucleoside-triphosphate reductase RIMD111065_RS16510 PF03477 ATP cone domain RIMD111065_RS16520 PF12826 Helix-hairpin-helix motif RIMD111065_RS16520 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RIMD111065_RS16520 PF03120 NAD-dependent DNA ligase OB-fold domain RIMD111065_RS16520 PF01653 NAD-dependent DNA ligase adenylation domain RIMD111065_RS16520 PF00533 BRCA1 C Terminus (BRCT) domain RIMD111065_RS16525 PF04354 ZipA, C-terminal FtsZ-binding domain RIMD111065_RS16530 PF06470 SMC proteins Flexible Hinge Domain RIMD111065_RS16530 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_RS16540 PF03458 UPF0126 domain RIMD111065_RS16550 PF05951 Bacterial protein of unknown function (DUF882) RIMD111065_RS16555 PF01471 Putative peptidoglycan binding domain RIMD111065_RS16555 PF03734 L,D-transpeptidase catalytic domain RIMD111065_RS16570 PF00535 Glycosyl transferase family 2 RIMD111065_RS16585 PF00128 Alpha amylase, catalytic domain RIMD111065_RS16595 PF00072 Response regulator receiver domain RIMD111065_RS16595 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS16620 PF02080 TrkA-C domain RIMD111065_RS16620 PF02254 TrkA-N domain RIMD111065_RS16620 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS16625 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS16630 PF09179 TilS substrate binding domain RIMD111065_RS16630 PF01171 PP-loop family RIMD111065_RS16630 PF11734 TilS substrate C-terminal domain RIMD111065_RS16635 PF01431 Peptidase family M13 RIMD111065_RS16635 PF05649 Peptidase family M13 RIMD111065_RS16645 PF16326 ABC transporter C-terminal domain RIMD111065_RS16645 PF00005 ABC transporter RIMD111065_RS16645 PF12848 ABC transporter RIMD111065_RS16655 PF13520 Amino acid permease RIMD111065_RS16660 PF03466 LysR substrate binding domain RIMD111065_RS16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS16665 PF12146 Serine aminopeptidase, S33 RIMD111065_RS16670 PF12146 Serine aminopeptidase, S33 RIMD111065_RS16675 PF03466 LysR substrate binding domain RIMD111065_RS16675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS16680 PF12706 Beta-lactamase superfamily domain RIMD111065_RS16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS16690 PF03466 LysR substrate binding domain RIMD111065_RS16700 PF08543 Phosphomethylpyrimidine kinase RIMD111065_RS16705 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RIMD111065_RS16705 PF01276 Orn/Lys/Arg decarboxylase, major domain RIMD111065_RS16705 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RIMD111065_RS16710 PF13520 Amino acid permease RIMD111065_RS16715 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS16715 PF18500 CadC C-terminal domain 1 RIMD111065_RS16720 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RIMD111065_RS16725 PF14579 Helix-hairpin-helix motif RIMD111065_RS16725 PF01336 OB-fold nucleic acid binding domain RIMD111065_RS16725 PF07733 Bacterial DNA polymerase III alpha NTPase domain RIMD111065_RS16725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RIMD111065_RS16725 PF02811 PHP domain RIMD111065_RS16730 PF01351 Ribonuclease HII RIMD111065_RS16735 PF02684 Lipid-A-disaccharide synthetase RIMD111065_RS16740 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RIMD111065_RS16740 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_RS16745 PF07977 FabA-like domain RIMD111065_RS16750 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RIMD111065_RS16750 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_RS16755 PF03938 Outer membrane protein (OmpH-like) RIMD111065_RS16760 PF07244 Surface antigen variable number repeat RIMD111065_RS16760 PF01103 Surface antigen RIMD111065_RS16765 PF17820 PDZ domain RIMD111065_RS16765 PF02163 Peptidase family M50 RIMD111065_RS16770 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RIMD111065_RS16770 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RIMD111065_RS16770 PF13288 DXP reductoisomerase C-terminal domain RIMD111065_RS16780 PF01255 Putative undecaprenyl diphosphate synthase RIMD111065_RS16785 PF01765 Ribosome recycling factor RIMD111065_RS16790 PF00696 Amino acid kinase family RIMD111065_RS16795 PF00889 Elongation factor TS RIMD111065_RS16800 PF00318 Ribosomal protein S2 RIMD111065_RS16805 PF00557 Metallopeptidase family M24 RIMD111065_RS16810 PF01966 HD domain RIMD111065_RS16810 PF01909 Nucleotidyltransferase domain RIMD111065_RS16810 PF08335 GlnD PII-uridylyltransferase RIMD111065_RS16810 PF01842 ACT domain RIMD111065_RS16815 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_RS16815 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_RS16815 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RIMD111065_RS16820 PF11944 Protein of unknown function (DUF3461) RIMD111065_RS16825 PF02378 Phosphotransferase system, EIIC RIMD111065_RS16825 PF00367 phosphotransferase system, EIIB RIMD111065_RS16830 PF07148 Maltose operon periplasmic protein precursor (MalM) RIMD111065_RS16835 PF02264 LamB porin RIMD111065_RS16840 PF00258 Flavodoxin RIMD111065_RS16845 PF00849 RNA pseudouridylate synthase RIMD111065_RS16850 PF04287 tRNA pseudouridine synthase C RIMD111065_RS16875 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) RIMD111065_RS16880 PF07348 Syd protein (SUKH-2) RIMD111065_RS16885 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RIMD111065_RS16885 PF14489 QueF-like protein RIMD111065_RS16895 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS16900 PF03641 Possible lysine decarboxylase RIMD111065_RS16900 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases RIMD111065_RS16900 PF11892 Domain of unknown function (DUF3412) RIMD111065_RS16905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RIMD111065_RS16905 PF01367 5'-3' exonuclease, C-terminal SAM fold RIMD111065_RS16910 PF00180 Isocitrate/isopropylmalate dehydrogenase RIMD111065_RS16910 PF18324 Hypothetical protein TT1725 RIMD111065_RS16920 PF18125 RlmM ferredoxin-like domain RIMD111065_RS16920 PF01728 FtsJ-like methyltransferase RIMD111065_RS16925 PF04241 Protein of unknown function (DUF423) RIMD111065_RS16935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS16935 PF03466 LysR substrate binding domain RIMD111065_RS16940 PF00672 HAMP domain RIMD111065_RS16940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS16945 PF00817 impB/mucB/samB family RIMD111065_RS16945 PF11798 IMS family HHH motif RIMD111065_RS16945 PF11799 impB/mucB/samB family C-terminal domain RIMD111065_RS16960 PF02424 ApbE family RIMD111065_RS16965 PF00970 Oxidoreductase FAD-binding domain RIMD111065_RS16965 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_RS16965 PF00175 Oxidoreductase NAD-binding domain RIMD111065_RS16970 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_RS16975 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_RS16980 PF04205 FMN-binding domain RIMD111065_RS16985 PF03116 NQR2, RnfD, RnfE family RIMD111065_RS16990 PF11973 NQRA C-terminal domain RIMD111065_RS16990 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RIMD111065_RS16995 PF01722 BolA-like protein RIMD111065_RS17000 PF05175 Methyltransferase small domain RIMD111065_RS17010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RIMD111065_RS17020 PF07690 Major Facilitator Superfamily RIMD111065_RS17025 PF03502 Nucleoside-specific channel-forming protein, Tsx RIMD111065_RS17030 PF04461 Protein of unknown function (DUF520) RIMD111065_RS17035 PF08546 Ketopantoate reductase PanE/ApbA C terminal RIMD111065_RS17035 PF02558 Ketopantoate reductase PanE/ApbA RIMD111065_RS17040 PF01965 DJ-1/PfpI family RIMD111065_RS17045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_RS17045 PF00205 Thiamine pyrophosphate enzyme, central domain RIMD111065_RS17045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_RS17050 PF03306 Alpha-acetolactate decarboxylase RIMD111065_RS17055 PF03466 LysR substrate binding domain RIMD111065_RS17055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS17090 PF04717 Type VI secretion system, phage-baseplate injector RIMD111065_RS17100 PF05638 Type VI secretion system effector, Hcp RIMD111065_RS17105 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS17105 PF03472 Autoinducer binding domain RIMD111065_RS17110 PF13356 Arm DNA-binding domain RIMD111065_RS17110 PF00589 Phage integrase family RIMD111065_RS17160 PF13276 HTH-like domain RIMD111065_RS17160 PF01527 Transposase RIMD111065_RS17160 PF13333 Integrase core domain RIMD111065_RS17160 PF00665 Integrase core domain RIMD111065_RS17180 PF12561 ToxR activated gene A lipoprotein domain RIMD111065_RS17180 PF17945 Beta/Gamma crystallin RIMD111065_RS17185 PF13737 Transposase DDE domain RIMD111065_RS17210 PF00563 EAL domain RIMD111065_RS17210 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS17210 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS17220 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS17235 PF00563 EAL domain RIMD111065_RS17235 PF12792 CSS motif domain associated with EAL RIMD111065_RS17255 PF00816 H-NS histone family RIMD111065_RS17265 PF13148 Protein of unknown function (DUF3987) RIMD111065_RS17285 PF09588 YqaJ-like viral recombinase domain RIMD111065_RS17330 PF04002 RadC-like JAB domain RIMD111065_RS17370 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A RIMD111065_RS17385 PF06965 Na+/H+ antiporter 1 RIMD111065_RS17385 PF13462 Thioredoxin RIMD111065_RS17390 PF16363 GDP-mannose 4,6 dehydratase RIMD111065_RS17395 PF00970 Oxidoreductase FAD-binding domain RIMD111065_RS17395 PF00042 Globin RIMD111065_RS17395 PF00175 Oxidoreductase NAD-binding domain RIMD111065_RS17400 PF03063 Prismane/CO dehydrogenase family RIMD111065_RS17405 PF00210 Ferritin-like domain RIMD111065_RS17445 PF00106 short chain dehydrogenase RIMD111065_RS17455 PF00875 DNA photolyase RIMD111065_RS17455 PF03441 FAD binding domain of DNA photolyase RIMD111065_RS17460 PF13411 MerR HTH family regulatory protein RIMD111065_RS17465 PF08349 Protein of unknown function (DUF1722) RIMD111065_RS17495 PF01817 Chorismate mutase type II RIMD111065_RS17495 PF00800 Prephenate dehydratase RIMD111065_RS17520 PF08220 DeoR-like helix-turn-helix domain RIMD111065_RS17520 PF00455 DeoR C terminal sensor domain RIMD111065_RS17525 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RIMD111065_RS17525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RIMD111065_RS17530 PF17042 Nucleotide-binding C-terminal domain RIMD111065_RS17530 PF07005 Sugar-binding N-terminal domain RIMD111065_RS17535 PF00596 Class II Aldolase and Adducin N-terminal domain RIMD111065_RS17540 PF01261 Xylose isomerase-like TIM barrel RIMD111065_RS17545 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS17550 PF02447 GntP family permease RIMD111065_RS17560 PF00672 HAMP domain RIMD111065_RS17560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS17560 PF02743 Cache domain RIMD111065_RS17565 PF03573 outer membrane porin, OprD family RIMD111065_RS17570 PF00106 short chain dehydrogenase RIMD111065_RS17595 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RIMD111065_RS17605 PF06029 AlkA N-terminal domain RIMD111065_RS17605 PF02805 Metal binding domain of Ada RIMD111065_RS17605 PF12833 Helix-turn-helix domain RIMD111065_RS17605 PF00730 HhH-GPD superfamily base excision DNA repair protein RIMD111065_RS17610 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RIMD111065_RS17610 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RIMD111065_RS17620 PF01136 Peptidase family U32 RIMD111065_RS17620 PF12392 Collagenase RIMD111065_RS17625 PF01810 LysE type translocator RIMD111065_RS17630 PF03466 LysR substrate binding domain RIMD111065_RS17630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS17635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RIMD111065_RS17635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RIMD111065_RS17640 PF02743 Cache domain RIMD111065_RS17640 PF00672 HAMP domain RIMD111065_RS17640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS17645 PF00072 Response regulator receiver domain RIMD111065_RS17655 PF01584 CheW-like domain RIMD111065_RS17655 PF07194 P2 response regulator binding domain RIMD111065_RS17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS17655 PF01627 Hpt domain RIMD111065_RS17655 PF02895 Signal transducing histidine kinase, homodimeric domain RIMD111065_RS17660 PF00672 HAMP domain RIMD111065_RS17660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS17660 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS17665 PF01584 CheW-like domain RIMD111065_RS17670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS17670 PF00672 HAMP domain RIMD111065_RS17670 PF02203 Tar ligand binding domain homologue RIMD111065_RS17675 PF03705 CheR methyltransferase, all-alpha domain RIMD111065_RS17675 PF01739 CheR methyltransferase, SAM binding domain RIMD111065_RS17680 PF03975 CheD chemotactic sensory transduction RIMD111065_RS17685 PF01339 CheB methylesterase RIMD111065_RS17685 PF00072 Response regulator receiver domain RIMD111065_RS17690 PF00266 Aminotransferase class-V RIMD111065_RS17715 PF00072 Response regulator receiver domain RIMD111065_RS17715 PF01627 Hpt domain RIMD111065_RS17715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS17715 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS17715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_RS17715 PF00672 HAMP domain RIMD111065_RS17720 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS17720 PF00072 Response regulator receiver domain RIMD111065_RS17745 PF00563 EAL domain RIMD111065_RS17745 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS17745 PF01590 GAF domain RIMD111065_RS17745 PF00989 PAS fold RIMD111065_RS17750 PF01136 Peptidase family U32 RIMD111065_RS17750 PF16325 Peptidase family U32 C-terminal domain RIMD111065_RS17755 PF12838 4Fe-4S dicluster domain RIMD111065_RS17760 PF01168 Alanine racemase, N-terminal domain RIMD111065_RS17760 PF00842 Alanine racemase, C-terminal domain RIMD111065_RS17765 PF00772 DnaB-like helicase N terminal domain RIMD111065_RS17765 PF03796 DnaB-like helicase C terminal domain RIMD111065_RS17775 PF12792 CSS motif domain associated with EAL RIMD111065_RS17775 PF00563 EAL domain RIMD111065_RS17780 PF00149 Calcineurin-like phosphoesterase RIMD111065_RS17780 PF02872 5'-nucleotidase, C-terminal domain RIMD111065_RS17800 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS17800 PF00072 Response regulator receiver domain RIMD111065_RS17800 PF00158 Sigma-54 interaction domain RIMD111065_RS17805 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RIMD111065_RS17805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_RS17815 PF04102 SlyX RIMD111065_RS17820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_RS17825 PF09526 Probable metal-binding protein (DUF2387) RIMD111065_RS17835 PF01584 CheW-like domain RIMD111065_RS17835 PF00072 Response regulator receiver domain RIMD111065_RS17840 PF00561 alpha/beta hydrolase fold RIMD111065_RS17845 PF00563 EAL domain RIMD111065_RS17845 PF00360 Phytochrome region RIMD111065_RS17845 PF01590 GAF domain RIMD111065_RS17845 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS17850 PF06794 Uncharacterised protein family (UPF0270) RIMD111065_RS17855 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RIMD111065_RS17855 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RIMD111065_RS17855 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RIMD111065_RS17860 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RIMD111065_RS17865 PF00535 Glycosyl transferase family 2 RIMD111065_RS17870 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS17870 PF02911 Formyl transferase, C-terminal domain RIMD111065_RS17870 PF00551 Formyl transferase RIMD111065_RS17875 PF01522 Polysaccharide deacetylase RIMD111065_RS17880 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RIMD111065_RS17885 PF00892 EamA-like transporter family RIMD111065_RS17890 PF00893 Small Multidrug Resistance protein RIMD111065_RS17895 PF00485 Phosphoribulokinase / Uridine kinase family RIMD111065_RS17910 PF02566 OsmC-like protein RIMD111065_RS17915 PF13545 Crp-like helix-turn-helix domain RIMD111065_RS17915 PF00027 Cyclic nucleotide-binding domain RIMD111065_RS17920 PF13847 Methyltransferase domain RIMD111065_RS17925 PF18416 N-acetylglucosamine binding protein domain 2 RIMD111065_RS17925 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RIMD111065_RS17930 PF17945 Beta/Gamma crystallin RIMD111065_RS17930 PF12561 ToxR activated gene A lipoprotein domain RIMD111065_RS17935 PF08329 Chitinase A, N-terminal domain RIMD111065_RS17935 PF00704 Glycosyl hydrolases family 18 RIMD111065_RS17940 PF00989 PAS fold RIMD111065_RS17940 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS17940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS17950 PF13443 Cro/C1-type HTH DNA-binding domain RIMD111065_RS17955 PF12832 MFS_1 like family RIMD111065_RS17960 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS17960 PF00593 TonB dependent receptor RIMD111065_RS17980 PF01243 Pyridoxamine 5'-phosphate oxidase RIMD111065_RS17985 PF06228 Haem utilisation ChuX/HutX RIMD111065_RS17995 PF01032 FecCD transport family RIMD111065_RS18000 PF00005 ABC transporter RIMD111065_RS18010 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_RS18020 PF01791 DeoC/LacD family aldolase RIMD111065_RS18025 PF07670 Nucleoside recognition RIMD111065_RS18025 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_RS18025 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_RS18030 PF01048 Phosphorylase superfamily RIMD111065_RS18035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS18035 PF03466 LysR substrate binding domain RIMD111065_RS18050 PF01464 Transglycosylase SLT domain RIMD111065_RS18055 PF01048 Phosphorylase superfamily RIMD111065_RS18070 PF12848 ABC transporter RIMD111065_RS18070 PF00005 ABC transporter RIMD111065_RS18080 PF00860 Permease family RIMD111065_RS18085 PF05099 Tellurite resistance protein TerB RIMD111065_RS18085 PF00226 DnaJ domain RIMD111065_RS18090 PF00483 Nucleotidyl transferase RIMD111065_RS18095 PF01636 Phosphotransferase enzyme family RIMD111065_RS18100 PF03968 OstA-like protein RIMD111065_RS18100 PF04453 LPS transport system D RIMD111065_RS18105 PF00639 PPIC-type PPIASE domain RIMD111065_RS18105 PF09312 SurA N-terminal domain RIMD111065_RS18110 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RIMD111065_RS18115 PF00398 Ribosomal RNA adenine dimethylase RIMD111065_RS18120 PF04379 ApaG domain RIMD111065_RS18125 PF00149 Calcineurin-like phosphoesterase RIMD111065_RS18135 PF00296 Luciferase-like monooxygenase RIMD111065_RS18155 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS18155 PF00501 AMP-binding enzyme RIMD111065_RS18160 PF07670 Nucleoside recognition RIMD111065_RS18165 PF01018 GTP1/OBG RIMD111065_RS18165 PF01926 50S ribosome-binding GTPase RIMD111065_RS18170 PF01016 Ribosomal L27 protein RIMD111065_RS18175 PF00829 Ribosomal prokaryotic L21 protein RIMD111065_RS18180 PF00348 Polyprenyl synthetase RIMD111065_RS18185 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) RIMD111065_RS18190 PF01145 SPFH domain / Band 7 family RIMD111065_RS18195 PF01145 SPFH domain / Band 7 family RIMD111065_RS18195 PF12221 Bacterial membrane protein N terminal RIMD111065_RS18200 PF13167 GTP-binding GTPase N-terminal RIMD111065_RS18200 PF01926 50S ribosome-binding GTPase RIMD111065_RS18200 PF16360 GTP-binding GTPase Middle Region RIMD111065_RS18205 PF17209 Hfq protein RIMD111065_RS18215 PF01119 DNA mismatch repair protein, C-terminal domain RIMD111065_RS18215 PF08676 MutL C terminal dimerisation domain RIMD111065_RS18220 PF01520 N-acetylmuramoyl-L-alanine amidase RIMD111065_RS18225 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RIMD111065_RS18230 PF03853 YjeF-related protein N-terminus RIMD111065_RS18230 PF01256 Carbohydrate kinase RIMD111065_RS18235 PF08331 Domain of unknown function (DUF1730) RIMD111065_RS18240 PF00480 ROK family RIMD111065_RS18250 PF09383 NIL domain RIMD111065_RS18250 PF00005 ABC transporter RIMD111065_RS18255 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS18260 PF03180 NLPA lipoprotein RIMD111065_RS18265 PF02357 Transcription termination factor nusG RIMD111065_RS18270 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS18270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS18270 PF00672 HAMP domain RIMD111065_RS18275 PF00563 EAL domain RIMD111065_RS18275 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS18275 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS18280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS18280 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS18280 PF09456 RcsC Alpha-Beta-Loop (ABL) RIMD111065_RS18280 PF00072 Response regulator receiver domain RIMD111065_RS18290 PF01966 HD domain RIMD111065_RS18290 PF13286 Phosphohydrolase-associated domain RIMD111065_RS18295 PF00072 Response regulator receiver domain RIMD111065_RS18295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS18295 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS18295 PF18415 Histidine kinase receptor ArcB trans-membrane domain RIMD111065_RS18295 PF01627 Hpt domain RIMD111065_RS18295 PF00989 PAS fold RIMD111065_RS18315 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RIMD111065_RS18320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS18320 PF03466 LysR substrate binding domain RIMD111065_RS18330 PF01259 SAICAR synthetase RIMD111065_RS18335 PF06804 NlpB/DapX lipoprotein RIMD111065_RS18340 PF00701 Dihydrodipicolinate synthetase family RIMD111065_RS18345 PF01842 ACT domain RIMD111065_RS18350 PF00578 AhpC/TSA family RIMD111065_RS18355 PF03887 YfbU domain RIMD111065_RS18360 PF04217 Protein of unknown function, DUF412 RIMD111065_RS18365 PF00871 Acetokinase family RIMD111065_RS18370 PF07085 DRTGG domain RIMD111065_RS18370 PF01515 Phosphate acetyl/butaryl transferase RIMD111065_RS18375 PF10369 Small subunit of acetolactate synthase RIMD111065_RS18380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_RS18380 PF00205 Thiamine pyrophosphate enzyme, central domain RIMD111065_RS18380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_RS18390 PF04101 Glycosyltransferase family 28 C-terminal domain RIMD111065_RS18390 PF03033 Glycosyltransferase family 28 N-terminal domain RIMD111065_RS18395 PF01569 PAP2 superfamily RIMD111065_RS18405 PF08502 LeuA allosteric (dimerisation) domain RIMD111065_RS18405 PF00682 HMGL-like RIMD111065_RS18410 PF00180 Isocitrate/isopropylmalate dehydrogenase RIMD111065_RS18415 PF00330 Aconitase family (aconitate hydratase) RIMD111065_RS18420 PF00694 Aconitase C-terminal domain RIMD111065_RS18440 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS18445 PF00005 ABC transporter RIMD111065_RS18450 PF13638 PIN domain RIMD111065_RS18450 PF02562 PhoH-like protein RIMD111065_RS18460 PF00317 Ribonucleotide reductase, all-alpha domain RIMD111065_RS18460 PF02867 Ribonucleotide reductase, barrel domain RIMD111065_RS18460 PF08343 Ribonucleotide reductase N-terminal RIMD111065_RS18495 PF12137 RNA polymerase recycling family C-terminal RIMD111065_RS18495 PF00271 Helicase conserved C-terminal domain RIMD111065_RS18495 PF00176 SNF2 family N-terminal domain RIMD111065_RS18495 PF18339 RapA N-terminal Tudor like domain 1 RIMD111065_RS18495 PF18337 RapA N-terminal Tudor like domain RIMD111065_RS18500 PF00849 RNA pseudouridylate synthase RIMD111065_RS18510 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS18510 PF00563 EAL domain RIMD111065_RS18510 PF13188 PAS domain RIMD111065_RS18510 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS18520 PF00118 TCP-1/cpn60 chaperonin family RIMD111065_RS18525 PF00166 Chaperonin 10 Kd subunit RIMD111065_RS18530 PF01554 MatE RIMD111065_RS18535 PF04186 FxsA cytoplasmic membrane protein RIMD111065_RS18540 PF10415 Fumarase C C-terminus RIMD111065_RS18540 PF00206 Lyase RIMD111065_RS18545 PF03605 Anaerobic c4-dicarboxylate membrane transporter RIMD111065_RS18550 PF00267 Gram-negative porin RIMD111065_RS18560 PF07690 Major Facilitator Superfamily RIMD111065_RS18565 PF03466 LysR substrate binding domain RIMD111065_RS18565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS18570 PF03413 Peptidase propeptide and YPEB domain RIMD111065_RS18570 PF04151 Bacterial pre-peptidase C-terminal domain RIMD111065_RS18570 PF02868 Thermolysin metallopeptidase, alpha-helical domain RIMD111065_RS18570 PF07504 Fungalysin/Thermolysin Propeptide Motif RIMD111065_RS18570 PF01447 Thermolysin metallopeptidase, catalytic domain RIMD111065_RS18575 PF13302 Acetyltransferase (GNAT) domain RIMD111065_RS18580 PF13302 Acetyltransferase (GNAT) domain RIMD111065_RS18590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RIMD111065_RS18590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RIMD111065_RS18595 PF07690 Major Facilitator Superfamily RIMD111065_RS18600 PF01725 Ham1 family RIMD111065_RS18605 PF06969 HemN C-terminal domain RIMD111065_RS18605 PF04055 Radical SAM superfamily RIMD111065_RS18610 PF03889 Alternative ribosome-rescue factor A RIMD111065_RS18620 PF13411 MerR HTH family regulatory protein RIMD111065_RS18625 PF01808 AICARFT/IMPCHase bienzyme RIMD111065_RS18625 PF02142 MGS-like domain RIMD111065_RS18630 PF02843 Phosphoribosylglycinamide synthetase, C domain RIMD111065_RS18630 PF02844 Phosphoribosylglycinamide synthetase, N domain RIMD111065_RS18630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RIMD111065_RS18645 PF00128 Alpha amylase, catalytic domain RIMD111065_RS18655 PF03979 Sigma-70 factor, region 1.1 RIMD111065_RS18655 PF04546 Sigma-70, non-essential region RIMD111065_RS18655 PF00140 Sigma-70 factor, region 1.2 RIMD111065_RS18655 PF04542 Sigma-70 region 2 RIMD111065_RS18655 PF04539 Sigma-70 region 3 RIMD111065_RS18655 PF04545 Sigma-70, region 4 RIMD111065_RS18660 PF08278 DNA primase DnaG DnaB-binding RIMD111065_RS18660 PF08275 DNA primase catalytic core, N-terminal domain RIMD111065_RS18660 PF01807 CHC2 zinc finger RIMD111065_RS18660 PF10410 DnaB-helicase binding domain of primase RIMD111065_RS18665 PF09424 Yqey-like protein RIMD111065_RS18670 PF01165 Ribosomal protein S21 RIMD111065_RS18675 PF00814 Glycoprotease family RIMD111065_RS18680 PF04545 Sigma-70, region 4 RIMD111065_RS18680 PF04542 Sigma-70 region 2 RIMD111065_RS18680 PF04539 Sigma-70 region 3 RIMD111065_RS18680 PF00140 Sigma-70 factor, region 1.2 RIMD111065_RS18685 PF01476 LysM domain RIMD111065_RS18685 PF01551 Peptidase family M23 RIMD111065_RS18690 PF09335 SNARE associated Golgi protein RIMD111065_RS18700 PF01975 Survival protein SurE RIMD111065_RS18705 PF01142 tRNA pseudouridine synthase D (TruD) RIMD111065_RS18710 PF02542 YgbB family RIMD111065_RS18715 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RIMD111065_RS18720 PF04977 Septum formation initiator RIMD111065_RS18725 PF00113 Enolase, C-terminal TIM barrel domain RIMD111065_RS18725 PF03952 Enolase, N-terminal domain RIMD111065_RS18730 PF06418 CTP synthase N-terminus RIMD111065_RS18730 PF00117 Glutamine amidotransferase class-I RIMD111065_RS18735 PF03819 MazG nucleotide pyrophosphohydrolase domain RIMD111065_RS18740 PF02824 TGS domain RIMD111065_RS18740 PF13291 ACT domain RIMD111065_RS18740 PF04607 Region found in RelA / SpoT proteins RIMD111065_RS18745 PF05958 tRNA (Uracil-5-)-methyltransferase RIMD111065_RS18745 PF01938 TRAM domain RIMD111065_RS18750 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS18750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_RS18750 PF00072 Response regulator receiver domain RIMD111065_RS18750 PF01627 Hpt domain RIMD111065_RS18750 PF00672 HAMP domain RIMD111065_RS18750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS18755 PF07308 Protein of unknown function (DUF1456) RIMD111065_RS18760 PF01510 N-acetylmuramoyl-L-alanine amidase RIMD111065_RS18770 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RIMD111065_RS18775 PF02565 Recombination protein O C terminal RIMD111065_RS18775 PF11967 Recombination protein O N terminal RIMD111065_RS18780 PF01926 50S ribosome-binding GTPase RIMD111065_RS18780 PF07650 KH domain RIMD111065_RS18785 PF14622 Ribonuclease-III-like RIMD111065_RS18785 PF00035 Double-stranded RNA binding motif RIMD111065_RS18790 PF10502 Signal peptidase, peptidase S26 RIMD111065_RS18795 PF00679 Elongation factor G C-terminus RIMD111065_RS18795 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS18795 PF03144 Elongation factor Tu domain 2 RIMD111065_RS18795 PF06421 GTP-binding protein LepA C-terminus RIMD111065_RS18805 PF03888 MucB/RseB N-terminal domain RIMD111065_RS18805 PF17188 MucB/RseB C-terminal domain RIMD111065_RS18810 PF03872 Anti sigma-E protein RseA, N-terminal domain RIMD111065_RS18810 PF03873 Anti sigma-E protein RseA, C-terminal domain RIMD111065_RS18815 PF08281 Sigma-70, region 4 RIMD111065_RS18815 PF04542 Sigma-70 region 2 RIMD111065_RS18820 PF02910 Fumarate reductase flavoprotein C-term RIMD111065_RS18820 PF00890 FAD binding domain RIMD111065_RS18830 PF03937 Flavinator of succinate dehydrogenase RIMD111065_RS18835 PF01571 Aminomethyltransferase folate-binding domain RIMD111065_RS18840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS18840 PF03466 LysR substrate binding domain RIMD111065_RS18855 PF03091 CutA1 divalent ion tolerance protein RIMD111065_RS18860 PF02683 Cytochrome C biogenesis protein transmembrane region RIMD111065_RS18860 PF11412 Disulphide bond corrector protein DsbC RIMD111065_RS18870 PF01266 FAD dependent oxidoreductase RIMD111065_RS18875 PF01116 Fructose-bisphosphate aldolase class-II RIMD111065_RS18880 PF00162 Phosphoglycerate kinase RIMD111065_RS18885 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RIMD111065_RS18885 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RIMD111065_RS18890 PF00480 ROK family RIMD111065_RS18895 PF01208 Uroporphyrinogen decarboxylase (URO-D) RIMD111065_RS18900 PF09297 NADH pyrophosphatase zinc ribbon domain RIMD111065_RS18900 PF00293 NUDIX domain RIMD111065_RS18905 PF00171 Aldehyde dehydrogenase family RIMD111065_RS18905 PF01619 Proline dehydrogenase RIMD111065_RS18905 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RIMD111065_RS18905 PF14850 DNA-binding domain of Proline dehydrogenase RIMD111065_RS18910 PF08239 Bacterial SH3 domain RIMD111065_RS18915 PF00027 Cyclic nucleotide-binding domain RIMD111065_RS18915 PF00520 Ion transport protein RIMD111065_RS18920 PF00672 HAMP domain RIMD111065_RS18920 PF02743 Cache domain RIMD111065_RS18920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS18930 PF03710 Glutamate-ammonia ligase adenylyltransferase RIMD111065_RS18930 PF08335 GlnD PII-uridylyltransferase RIMD111065_RS18950 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RIMD111065_RS18950 PF00326 Prolyl oligopeptidase family RIMD111065_RS18955 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_RS18960 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS18965 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS18970 PF00005 ABC transporter RIMD111065_RS18975 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS18980 PF00005 ABC transporter RIMD111065_RS18980 PF02687 FtsX-like permease family RIMD111065_RS18980 PF12704 MacB-like periplasmic core domain RIMD111065_RS18985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_RS18990 PF00072 Response regulator receiver domain RIMD111065_RS18990 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS18995 PF16527 Two-component sensor protein CpxA, periplasmic domain RIMD111065_RS18995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS18995 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS18995 PF00672 HAMP domain RIMD111065_RS19000 PF09297 NADH pyrophosphatase zinc ribbon domain RIMD111065_RS19000 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RIMD111065_RS19000 PF00293 NUDIX domain RIMD111065_RS19030 PF03060 Nitronate monooxygenase RIMD111065_RS19040 PF00445 Ribonuclease T2 family RIMD111065_RS19055 PF03150 Di-haem cytochrome c peroxidase RIMD111065_RS19060 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase RIMD111065_RS19080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS19080 PF03466 LysR substrate binding domain RIMD111065_RS19085 PF00271 Helicase conserved C-terminal domain RIMD111065_RS19085 PF00270 DEAD/DEAH box helicase RIMD111065_RS19095 PF00753 Metallo-beta-lactamase superfamily RIMD111065_RS19105 PF01425 Amidase RIMD111065_RS19110 PF04371 Porphyromonas-type peptidyl-arginine deiminase RIMD111065_RS19115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS19115 PF03466 LysR substrate binding domain RIMD111065_RS19125 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_RS19130 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS19150 PF16658 Class II release factor RF3, C-terminal domain RIMD111065_RS19150 PF03144 Elongation factor Tu domain 2 RIMD111065_RS19150 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS19155 PF00072 Response regulator receiver domain RIMD111065_RS19155 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS19160 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS19160 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS19160 PF13188 PAS domain RIMD111065_RS19160 PF00563 EAL domain RIMD111065_RS19165 PF05762 VWA domain containing CoxE-like protein RIMD111065_RS19170 PF07728 AAA domain (dynein-related subfamily) RIMD111065_RS19170 PF12592 Protein of unknown function (DUF3763) RIMD111065_RS19170 PF17868 AAA lid domain RIMD111065_RS19180 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS19190 PF00501 AMP-binding enzyme RIMD111065_RS19200 PF04262 Glutamate-cysteine ligase RIMD111065_RS19205 PF05193 Peptidase M16 inactive domain RIMD111065_RS19205 PF00675 Insulinase (Peptidase family M16) RIMD111065_RS19210 PF09335 SNARE associated Golgi protein RIMD111065_RS19215 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_RS19215 PF08990 Erythronolide synthase docking RIMD111065_RS19215 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_RS19215 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_RS19215 PF08659 KR domain RIMD111065_RS19215 PF00550 Phosphopantetheine attachment site RIMD111065_RS19215 PF14765 Polyketide synthase dehydratase RIMD111065_RS19215 PF00698 Acyl transferase domain RIMD111065_RS19215 PF16197 Ketoacyl-synthetase C-terminal extension RIMD111065_RS19235 PF00970 Oxidoreductase FAD-binding domain RIMD111065_RS19235 PF00175 Oxidoreductase NAD-binding domain RIMD111065_RS19240 PF03948 Ribosomal protein L9, C-terminal domain RIMD111065_RS19240 PF01281 Ribosomal protein L9, N-terminal domain RIMD111065_RS19245 PF01084 Ribosomal protein S18 RIMD111065_RS19250 PF01250 Ribosomal protein S6 RIMD111065_RS19255 PF01566 Natural resistance-associated macrophage protein RIMD111065_RS19275 PF13673 Acetyltransferase (GNAT) domain RIMD111065_RS19290 PF08032 RNA 2'-O ribose methyltransferase substrate binding RIMD111065_RS19290 PF00588 SpoU rRNA Methylase family RIMD111065_RS19295 PF17876 Cold shock domain RIMD111065_RS19295 PF08461 Ribonuclease R winged-helix domain RIMD111065_RS19295 PF08206 Ribonuclease B OB domain RIMD111065_RS19295 PF00773 RNB domain RIMD111065_RS19295 PF00575 S1 RNA binding domain RIMD111065_RS19300 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS19305 PF02664 S-Ribosylhomocysteinase (LuxS) RIMD111065_RS19315 PF00543 Nitrogen regulatory protein P-II RIMD111065_RS19320 PF00795 Carbon-nitrogen hydrolase RIMD111065_RS19320 PF02540 NAD synthase RIMD111065_RS19355 PF05567 Neisseria PilC beta-propeller domain RIMD111065_RS19380 PF02401 LytB protein RIMD111065_RS19385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_RS19390 PF01252 Signal peptidase (SPase) II RIMD111065_RS19395 PF00133 tRNA synthetases class I (I, L, M and V) RIMD111065_RS19395 PF06827 Zinc finger found in FPG and IleRS RIMD111065_RS19395 PF08264 Anticodon-binding domain of tRNA RIMD111065_RS19400 PF01687 Riboflavin kinase RIMD111065_RS19400 PF06574 FAD synthetase RIMD111065_RS19410 PF03023 Lipid II flippase MurJ RIMD111065_RS19415 PF01649 Ribosomal protein S20 RIMD111065_RS19420 PF01022 Bacterial regulatory protein, arsR family RIMD111065_RS19425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS19425 PF03466 LysR substrate binding domain RIMD111065_RS19435 PF06965 Na+/H+ antiporter 1 RIMD111065_RS19440 PF00303 Thymidylate synthase RIMD111065_RS19445 PF01790 Prolipoprotein diacylglyceryl transferase RIMD111065_RS19450 PF05524 PEP-utilising enzyme, N-terminal RIMD111065_RS19450 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_RS19450 PF02896 PEP-utilising enzyme, TIM barrel domain RIMD111065_RS19450 PF01590 GAF domain RIMD111065_RS19455 PF00293 NUDIX domain RIMD111065_RS19460 PF02976 DNA mismatch repair enzyme MutH RIMD111065_RS19470 PF01245 Ribosomal protein L19 RIMD111065_RS19475 PF01746 tRNA (Guanine-1)-methyltransferase RIMD111065_RS19480 PF05239 PRC-barrel domain RIMD111065_RS19480 PF01782 RimM N-terminal domain RIMD111065_RS19485 PF00886 Ribosomal protein S16 RIMD111065_RS19490 PF00448 SRP54-type protein, GTPase domain RIMD111065_RS19490 PF02978 Signal peptide binding domain RIMD111065_RS19490 PF02881 SRP54-type protein, helical bundle domain RIMD111065_RS19495 PF01578 Cytochrome C assembly protein RIMD111065_RS19500 PF00571 CBS domain RIMD111065_RS19500 PF03471 Transporter associated domain RIMD111065_RS19500 PF01595 Cyclin M transmembrane N-terminal domain RIMD111065_RS19505 PF02082 Transcriptional regulator RIMD111065_RS19510 PF00042 Globin RIMD111065_RS19510 PF00970 Oxidoreductase FAD-binding domain RIMD111065_RS19510 PF00175 Oxidoreductase NAD-binding domain RIMD111065_RS19515 PF08238 Sel1 repeat RIMD111065_RS19520 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RIMD111065_RS19520 PF00056 lactate/malate dehydrogenase, NAD binding domain RIMD111065_RS19525 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS19530 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS19535 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_RS19540 PF00005 ABC transporter RIMD111065_RS19545 PF02863 Arginine repressor, C-terminal domain RIMD111065_RS19545 PF01316 Arginine repressor, DNA binding domain RIMD111065_RS19550 PF04261 Dyp-type peroxidase family RIMD111065_RS19555 PF00005 ABC transporter RIMD111065_RS19555 PF08402 TOBE domain RIMD111065_RS19565 PF13416 Bacterial extracellular solute-binding protein RIMD111065_RS19570 PF00543 Nitrogen regulatory protein P-II RIMD111065_RS19575 PF00472 RF-1 domain RIMD111065_RS19580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RIMD111065_RS19580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RIMD111065_RS19585 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_RS19585 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_RS19585 PF07670 Nucleoside recognition RIMD111065_RS19590 PF03466 LysR substrate binding domain RIMD111065_RS19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS19595 PF00255 Glutathione peroxidase RIMD111065_RS19605 PF02595 Glycerate kinase family RIMD111065_RS19610 PF02447 GntP family permease RIMD111065_RS19615 PF17853 GGDEF-like domain RIMD111065_RS19615 PF05651 Putative sugar diacid recognition RIMD111065_RS19615 PF13556 PucR C-terminal helix-turn-helix domain RIMD111065_RS19620 PF06062 Uncharacterised protein family (UPF0231) RIMD111065_RS19635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS19635 PF08447 PAS fold RIMD111065_RS19640 PF03372 Endonuclease/Exonuclease/phosphatase family RIMD111065_RS19655 PF00270 DEAD/DEAH box helicase RIMD111065_RS19655 PF00271 Helicase conserved C-terminal domain RIMD111065_RS19665 PF08534 Redoxin RIMD111065_RS19670 PF00403 Heavy-metal-associated domain RIMD111065_RS19675 PF11852 Domain of unknown function (DUF3372) RIMD111065_RS19675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_RS19675 PF03714 Bacterial pullanase-associated domain RIMD111065_RS19675 PF17967 Pullulanase N2 domain RIMD111065_RS19675 PF18494 Pullulanase Ins domain RIMD111065_RS19690 PF02583 Metal-sensitive transcriptional repressor RIMD111065_RS19695 PF00155 Aminotransferase class I and II RIMD111065_RS19700 PF03466 LysR substrate binding domain RIMD111065_RS19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS19710 PF04055 Radical SAM superfamily RIMD111065_RS19715 PF11230 Protein of unknown function (DUF3029) RIMD111065_RS19735 PF14684 Tricorn protease C1 domain RIMD111065_RS19735 PF14685 Tricorn protease PDZ domain RIMD111065_RS19735 PF03572 Peptidase family S41 RIMD111065_RS19735 PF07676 WD40-like Beta Propeller Repeat RIMD111065_RS19765 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS19765 PF00672 HAMP domain RIMD111065_RS19765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS19770 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RIMD111065_RS19770 PF18416 N-acetylglucosamine binding protein domain 2 RIMD111065_RS19775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS19775 PF03466 LysR substrate binding domain RIMD111065_RS19780 PF12857 TOBE-like domain RIMD111065_RS19780 PF00005 ABC transporter RIMD111065_RS19785 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS19790 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS19805 PF13194 Domain of unknown function (DUF4010) RIMD111065_RS19810 PF12464 Maltose acetyltransferase RIMD111065_RS19810 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_RS19835 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_RS19845 PF00206 Lyase RIMD111065_RS19845 PF14698 Argininosuccinate lyase C-terminal RIMD111065_RS19850 PF00764 Arginosuccinate synthase RIMD111065_RS19855 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_RS19855 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_RS19860 PF00696 Amino acid kinase family RIMD111065_RS19865 PF02774 Semialdehyde dehydrogenase, dimerisation domain RIMD111065_RS19865 PF01118 Semialdehyde dehydrogenase, NAD binding domain RIMD111065_RS19870 PF01546 Peptidase family M20/M25/M40 RIMD111065_RS19870 PF07687 Peptidase dimerisation domain RIMD111065_RS19875 PF00311 Phosphoenolpyruvate carboxylase RIMD111065_RS19885 PF00742 Homoserine dehydrogenase RIMD111065_RS19885 PF03447 Homoserine dehydrogenase, NAD binding domain RIMD111065_RS19885 PF00696 Amino acid kinase family RIMD111065_RS19890 PF01053 Cys/Met metabolism PLP-dependent enzyme RIMD111065_RS19895 PF01340 Met Apo-repressor, MetJ RIMD111065_RS19905 PF01588 Putative tRNA binding domain RIMD111065_RS19910 PF03222 Tryptophan/tyrosine permease family RIMD111065_RS19915 PF00459 Inositol monophosphatase family RIMD111065_RS19920 PF00293 NUDIX domain RIMD111065_RS19925 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS19930 PF01479 S4 domain RIMD111065_RS19930 PF00579 tRNA synthetases class I (W and Y) RIMD111065_RS19935 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS19940 PF01203 Type II secretion system (T2SS), protein N RIMD111065_RS19945 PF04612 Type II secretion system (T2SS), protein M RIMD111065_RS19950 PF05134 Type II secretion system (T2SS), protein L RIMD111065_RS19950 PF12693 GspL periplasmic domain RIMD111065_RS19955 PF03934 Type II secretion system (T2SS), protein K RIMD111065_RS19965 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS19965 PF11612 Type II secretion system (T2SS), protein J RIMD111065_RS19970 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS19970 PF02501 Type II secretion system (T2SS), protein I RIMD111065_RS19975 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS19975 PF12019 Type II transport protein GspH RIMD111065_RS19985 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS19985 PF08334 Type II secretion system (T2SS), protein G RIMD111065_RS19990 PF00482 Type II secretion system (T2SS), protein F RIMD111065_RS19995 PF00437 Type II/IV secretion system protein RIMD111065_RS20000 PF00263 Bacterial type II and III secretion system protein RIMD111065_RS20000 PF03958 Bacterial type II/III secretion system short domain RIMD111065_RS20005 PF11356 Type II secretion system protein C RIMD111065_RS20010 PF01479 S4 domain RIMD111065_RS20015 PF01430 Hsp33 protein RIMD111065_RS20020 PF01293 Phosphoenolpyruvate carboxykinase RIMD111065_RS20025 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS20030 PF01321 Creatinase/Prolidase N-terminal domain RIMD111065_RS20030 PF00557 Metallopeptidase family M24 RIMD111065_RS20035 PF11756 Nitrous oxide-stimulated promoter RIMD111065_RS20040 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS20045 PF05433 Glycine zipper 2TM domain RIMD111065_RS20050 PF00149 Calcineurin-like phosphoesterase RIMD111065_RS20050 PF02872 5'-nucleotidase, C-terminal domain RIMD111065_RS20055 PF01810 LysE type translocator RIMD111065_RS20060 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS20060 PF03472 Autoinducer binding domain RIMD111065_RS20065 PF00765 Autoinducer synthase RIMD111065_RS20070 PF03466 LysR substrate binding domain RIMD111065_RS20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS20075 PF00773 RNB domain RIMD111065_RS20075 PF08206 Ribonuclease B OB domain RIMD111065_RS20075 PF17876 Cold shock domain RIMD111065_RS20080 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS20090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_RS20090 PF02378 Phosphotransferase system, EIIC RIMD111065_RS20090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_RS20095 PF01232 Mannitol dehydrogenase Rossmann domain RIMD111065_RS20095 PF08125 Mannitol dehydrogenase C-terminal domain RIMD111065_RS20100 PF05068 Mannitol repressor RIMD111065_RS20105 PF03471 Transporter associated domain RIMD111065_RS20105 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS20105 PF02080 TrkA-C domain RIMD111065_RS20125 PF01544 CorA-like Mg2+ transporter protein RIMD111065_RS20130 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RIMD111065_RS20145 PF04307 LexA-binding, inner membrane-associated putative hydrolase RIMD111065_RS20150 PF07670 Nucleoside recognition RIMD111065_RS20150 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_RS20150 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_RS20155 PF00271 Helicase conserved C-terminal domain RIMD111065_RS20155 PF00270 DEAD/DEAH box helicase RIMD111065_RS20155 PF03880 DbpA RNA binding domain RIMD111065_RS20180 PF01040 UbiA prenyltransferase family RIMD111065_RS20185 PF00425 chorismate binding enzyme RIMD111065_RS20190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_RS20190 PF16582 Middle domain of thiamine pyrophosphate RIMD111065_RS20190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_RS20195 PF12697 Alpha/beta hydrolase family RIMD111065_RS20200 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS20205 PF13378 Enolase C-terminal domain-like RIMD111065_RS20210 PF00501 AMP-binding enzyme RIMD111065_RS20220 PF00419 Fimbrial protein RIMD111065_RS20225 PF00419 Fimbrial protein RIMD111065_RS20230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RIMD111065_RS20230 PF02753 Pili assembly chaperone PapD, C-terminal domain RIMD111065_RS20235 PF13953 PapC C-terminal domain RIMD111065_RS20235 PF00577 Outer membrane usher protein RIMD111065_RS20235 PF13954 PapC N-terminal domain RIMD111065_RS20245 PF00419 Fimbrial protein RIMD111065_RS20255 PF01752 Collagenase RIMD111065_RS20255 PF08453 Peptidase family M9 N-terminal RIMD111065_RS20260 PF02698 DUF218 domain RIMD111065_RS20265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RIMD111065_RS20265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RIMD111065_RS20275 PF00561 alpha/beta hydrolase fold RIMD111065_RS20280 PF03280 Proteobacterial lipase chaperone protein RIMD111065_RS20295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_RS20295 PF12793 Sugar transport-related sRNA regulator N-term RIMD111065_RS20305 PF01053 Cys/Met metabolism PLP-dependent enzyme RIMD111065_RS20315 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_RS20330 PF03577 Peptidase family C69 RIMD111065_RS20335 PF00106 short chain dehydrogenase RIMD111065_RS20355 PF02308 MgtC family RIMD111065_RS20360 PF16657 Maltogenic Amylase, C-terminal domain RIMD111065_RS20360 PF02903 Alpha amylase, N-terminal ig-like domain RIMD111065_RS20360 PF00128 Alpha amylase, catalytic domain RIMD111065_RS20375 PF00884 Sulfatase RIMD111065_RS20380 PF01037 Lrp/AsnC ligand binding domain RIMD111065_RS20390 PF04204 Homoserine O-succinyltransferase RIMD111065_RS20395 PF01966 HD domain RIMD111065_RS20395 PF12072 Domain of unknown function (DUF3552) RIMD111065_RS20395 PF00013 KH domain RIMD111065_RS20400 PF02464 Competence-damaged protein RIMD111065_RS20400 PF00994 Probable molybdopterin binding domain RIMD111065_RS20410 PF00005 ABC transporter RIMD111065_RS20430 PF07722 Peptidase C26 RIMD111065_RS20440 PF00027 Cyclic nucleotide-binding domain RIMD111065_RS20440 PF13545 Crp-like helix-turn-helix domain RIMD111065_RS20450 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_RS20455 PF00589 Phage integrase family RIMD111065_RS20455 PF02899 Phage integrase, N-terminal SAM-like domain RIMD111065_RS20465 PF01678 Diaminopimelate epimerase RIMD111065_RS20470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RIMD111065_RS20470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RIMD111065_RS20480 PF01491 Frataxin-like domain RIMD111065_RS20485 PF02230 Phospholipase/Carboxylesterase RIMD111065_RS20490 PF01295 Adenylate cyclase, class-I RIMD111065_RS20490 PF12633 Adenylate cyclase NT domain RIMD111065_RS20495 PF03900 Porphobilinogen deaminase, C-terminal domain RIMD111065_RS20495 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RIMD111065_RS20500 PF02602 Uroporphyrinogen-III synthase HemD RIMD111065_RS20505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase RIMD111065_RS20515 PF03692 Putative zinc- or iron-chelating domain RIMD111065_RS20520 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RIMD111065_RS20535 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS20535 PF00593 TonB dependent receptor RIMD111065_RS20560 PF01638 HxlR-like helix-turn-helix RIMD111065_RS20565 PF08803 Putative mono-oxygenase ydhR RIMD111065_RS20580 PF06055 Exopolysaccharide synthesis, ExoD RIMD111065_RS20590 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS20590 PF17151 Periplasmic sensor domain RIMD111065_RS20605 PF13036 Peptidoglycan-synthase activator LpoB RIMD111065_RS20635 PF06968 Biotin and Thiamin Synthesis associated domain RIMD111065_RS20635 PF04055 Radical SAM superfamily RIMD111065_RS20640 PF05690 Thiazole biosynthesis protein ThiG RIMD111065_RS20650 PF00899 ThiF family RIMD111065_RS20655 PF02581 Thiamine monophosphate synthase RIMD111065_RS20660 PF13667 ThiC-associated domain RIMD111065_RS20660 PF01964 Radical SAM ThiC family RIMD111065_RS20665 PF03440 Aerolysin/Pertussis toxin (APT) domain RIMD111065_RS20665 PF01117 Aerolysin toxin RIMD111065_RS20680 PF00072 Response regulator receiver domain RIMD111065_RS20680 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS20685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS20690 PF05525 Branched-chain amino acid transport protein RIMD111065_RS20695 PF08443 RimK-like ATP-grasp domain RIMD111065_RS20695 PF18030 RimK PreATP-grasp domain RIMD111065_RS20700 PF02574 Homocysteine S-methyltransferase RIMD111065_RS20700 PF02310 B12 binding domain RIMD111065_RS20700 PF02607 B12 binding domain RIMD111065_RS20700 PF00809 Pterin binding enzyme RIMD111065_RS20700 PF02965 Vitamin B12 dependent methionine synthase, activation domain RIMD111065_RS20705 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS20720 PF08668 HDOD domain RIMD111065_RS20730 PF04228 Putative neutral zinc metallopeptidase RIMD111065_RS20735 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RIMD111065_RS20750 PF08447 PAS fold RIMD111065_RS20750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS20750 PF13426 PAS domain RIMD111065_RS20760 PF13581 Histidine kinase-like ATPase domain RIMD111065_RS20765 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS20765 PF01627 Hpt domain RIMD111065_RS20765 PF00072 Response regulator receiver domain RIMD111065_RS20765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_RS20765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS20765 PF00672 HAMP domain RIMD111065_RS20770 PF00072 Response regulator receiver domain RIMD111065_RS20780 PF07690 Major Facilitator Superfamily RIMD111065_RS20785 PF01914 MarC family integral membrane protein RIMD111065_RS20795 PF13580 SIS domain RIMD111065_RS20800 PF02378 Phosphotransferase system, EIIC RIMD111065_RS20800 PF00367 phosphotransferase system, EIIB RIMD111065_RS20815 PF01380 SIS domain RIMD111065_RS20815 PF01418 Helix-turn-helix domain, rpiR family RIMD111065_RS20820 PF01523 Putative modulator of DNA gyrase RIMD111065_RS20825 PF00795 Carbon-nitrogen hydrolase RIMD111065_RS20835 PF13502 AsmA-like C-terminal region RIMD111065_RS20835 PF13116 Protein of unknown function RIMD111065_RS20840 PF10150 Ribonuclease E/G family RIMD111065_RS20840 PF00575 S1 RNA binding domain RIMD111065_RS20845 PF02545 Maf-like protein RIMD111065_RS20850 PF04093 rod shape-determining protein MreD RIMD111065_RS20855 PF04085 rod shape-determining protein MreC RIMD111065_RS20885 PF14245 Type IV pilin PilA RIMD111065_RS20885 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS20890 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS20890 PF08334 Type II secretion system (T2SS), protein G RIMD111065_RS20895 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_RS20905 PF00482 Type II secretion system (T2SS), protein F RIMD111065_RS20910 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RIMD111065_RS20910 PF00437 Type II/IV secretion system protein RIMD111065_RS20925 PF03958 Bacterial type II/III secretion system short domain RIMD111065_RS20925 PF00263 Bacterial type II and III secretion system protein RIMD111065_RS20955 PF00563 EAL domain RIMD111065_RS20955 PF17157 Gammaproteobacterial periplasmic sensor domain RIMD111065_RS20955 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS20960 PF00563 EAL domain RIMD111065_RS20960 PF12792 CSS motif domain associated with EAL RIMD111065_RS20965 PF01699 Sodium/calcium exchanger protein RIMD111065_RS20970 PF00221 Aromatic amino acid lyase RIMD111065_RS20975 PF01175 Urocanase Rossmann-like domain RIMD111065_RS20975 PF17392 Urocanase C-terminal domain RIMD111065_RS20975 PF17391 Urocanase N-terminal domain RIMD111065_RS20980 PF00491 Arginase family RIMD111065_RS20985 PF01979 Amidohydrolase family RIMD111065_RS20990 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS20990 PF07702 UTRA domain RIMD111065_RS20995 PF00484 Carbonic anhydrase RIMD111065_RS21000 PF00140 Sigma-70 factor, region 1.2 RIMD111065_RS21000 PF04545 Sigma-70, region 4 RIMD111065_RS21000 PF04542 Sigma-70 region 2 RIMD111065_RS21005 PF18075 FtsX extracellular domain RIMD111065_RS21010 PF00005 ABC transporter RIMD111065_RS21015 PF00448 SRP54-type protein, GTPase domain RIMD111065_RS21015 PF02881 SRP54-type protein, helical bundle domain RIMD111065_RS21035 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS21045 PF13091 PLD-like domain RIMD111065_RS21055 PF01464 Transglycosylase SLT domain RIMD111065_RS21065 PF02416 mttA/Hcf106 family RIMD111065_RS21070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS21070 PF03466 LysR substrate binding domain RIMD111065_RS21075 PF01914 MarC family integral membrane protein RIMD111065_RS21080 PF10678 Protein of unknown function (DUF2492) RIMD111065_RS21085 PF00375 Sodium:dicarboxylate symporter family RIMD111065_RS21095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS21095 PF03466 LysR substrate binding domain RIMD111065_RS21100 PF13533 Biotin-lipoyl like RIMD111065_RS21105 PF07690 Major Facilitator Superfamily RIMD111065_RS21110 PF07947 YhhN family RIMD111065_RS21135 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RIMD111065_RS21135 PF00326 Prolyl oligopeptidase family RIMD111065_RS21150 PF00106 short chain dehydrogenase RIMD111065_RS21155 PF03466 LysR substrate binding domain RIMD111065_RS21155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS21160 PF02525 Flavodoxin-like fold RIMD111065_RS21165 PF00999 Sodium/hydrogen exchanger family RIMD111065_RS21165 PF02254 TrkA-N domain RIMD111065_RS21205 PF01196 Ribosomal protein L17 RIMD111065_RS21210 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RIMD111065_RS21210 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RIMD111065_RS21210 PF01000 RNA polymerase Rpb3/RpoA insert domain RIMD111065_RS21215 PF01479 S4 domain RIMD111065_RS21215 PF00163 Ribosomal protein S4/S9 N-terminal domain RIMD111065_RS21220 PF00411 Ribosomal protein S11 RIMD111065_RS21225 PF00416 Ribosomal protein S13/S18 RIMD111065_RS21230 PF00444 Ribosomal protein L36 RIMD111065_RS21235 PF00344 SecY translocase RIMD111065_RS21240 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RIMD111065_RS21245 PF00327 Ribosomal protein L30p/L7e RIMD111065_RS21250 PF03719 Ribosomal protein S5, C-terminal domain RIMD111065_RS21250 PF00333 Ribosomal protein S5, N-terminal domain RIMD111065_RS21255 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RIMD111065_RS21260 PF00347 Ribosomal protein L6 RIMD111065_RS21265 PF00410 Ribosomal protein S8 RIMD111065_RS21270 PF00253 Ribosomal protein S14p/S29e RIMD111065_RS21275 PF00281 Ribosomal protein L5 RIMD111065_RS21275 PF00673 ribosomal L5P family C-terminus RIMD111065_RS21280 PF00467 KOW motif RIMD111065_RS21280 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RIMD111065_RS21285 PF00238 Ribosomal protein L14p/L23e RIMD111065_RS21290 PF00366 Ribosomal protein S17 RIMD111065_RS21295 PF00831 Ribosomal L29 protein RIMD111065_RS21300 PF00252 Ribosomal protein L16p/L10e RIMD111065_RS21305 PF07650 KH domain RIMD111065_RS21305 PF00189 Ribosomal protein S3, C-terminal domain RIMD111065_RS21310 PF00237 Ribosomal protein L22p/L17e RIMD111065_RS21315 PF00203 Ribosomal protein S19 RIMD111065_RS21320 PF00181 Ribosomal Proteins L2, RNA binding domain RIMD111065_RS21320 PF03947 Ribosomal Proteins L2, C-terminal domain RIMD111065_RS21325 PF00276 Ribosomal protein L23 RIMD111065_RS21330 PF00573 Ribosomal protein L4/L1 family RIMD111065_RS21335 PF00297 Ribosomal protein L3 RIMD111065_RS21340 PF00338 Ribosomal protein S10p/S20e RIMD111065_RS21350 PF00672 HAMP domain RIMD111065_RS21350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS21350 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS21355 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS21355 PF00072 Response regulator receiver domain RIMD111065_RS21360 PF03449 Transcription elongation factor, N-terminal RIMD111065_RS21360 PF01272 Transcription elongation factor, GreA/GreB, C-term RIMD111065_RS21365 PF17674 HHH domain RIMD111065_RS21365 PF16921 Tex protein YqgF-like domain RIMD111065_RS21365 PF09371 Tex-like protein N-terminal domain RIMD111065_RS21365 PF00575 S1 RNA binding domain RIMD111065_RS21385 PF00561 alpha/beta hydrolase fold RIMD111065_RS21390 PF00156 Phosphoribosyl transferase domain RIMD111065_RS21395 PF01521 Iron-sulphur cluster biosynthesis RIMD111065_RS21395 PF01106 NifU-like domain RIMD111065_RS21400 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RIMD111065_RS21400 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RIMD111065_RS21405 PF02556 Preprotein translocase subunit SecB RIMD111065_RS21410 PF00581 Rhodanese-like domain RIMD111065_RS21415 PF01676 Metalloenzyme superfamily RIMD111065_RS21415 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RIMD111065_RS21420 PF01551 Peptidase family M23 RIMD111065_RS21430 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS21430 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_RS21435 PF01081 KDPG and KHG aldolase RIMD111065_RS21440 PF00920 Dehydratase family RIMD111065_RS21445 PF01202 Shikimate kinase RIMD111065_RS21450 PF02447 GntP family permease RIMD111065_RS21455 PF13091 PLD-like domain RIMD111065_RS21460 PF00271 Helicase conserved C-terminal domain RIMD111065_RS21460 PF00270 DEAD/DEAH box helicase RIMD111065_RS21460 PF17191 RecG wedge domain RIMD111065_RS21470 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS21470 PF09500 Putative thioesterase (yiiD_Cterm) RIMD111065_RS21480 PF02580 D-Tyr-tRNA(Tyr) deacylase RIMD111065_RS21485 PF03631 Virulence factor BrkB RIMD111065_RS21490 PF03631 Virulence factor BrkB RIMD111065_RS21495 PF00679 Elongation factor G C-terminus RIMD111065_RS21495 PF03144 Elongation factor Tu domain 2 RIMD111065_RS21495 PF00009 Elongation factor Tu GTP binding domain RIMD111065_RS21500 PF03951 Glutamine synthetase, beta-Grasp domain RIMD111065_RS21500 PF00120 Glutamine synthetase, catalytic domain RIMD111065_RS21510 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS21510 PF00989 PAS fold RIMD111065_RS21510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS21515 PF00158 Sigma-54 interaction domain RIMD111065_RS21515 PF02954 Bacterial regulatory protein, Fis family RIMD111065_RS21515 PF00072 Response regulator receiver domain RIMD111065_RS21520 PF00962 Adenosine/AMP deaminase RIMD111065_RS21525 PF04055 Radical SAM superfamily RIMD111065_RS21525 PF06969 HemN C-terminal domain RIMD111065_RS21530 PF10675 Protein of unknown function (DUF2489) RIMD111065_RS21535 PF04220 Der GTPase activator (YihI) RIMD111065_RS21540 PF00034 Cytochrome c RIMD111065_RS21545 PF01926 50S ribosome-binding GTPase RIMD111065_RS21550 PF07369 Protein of unknown function (DUF1488) RIMD111065_RS21555 PF01488 Shikimate / quinate 5-dehydrogenase RIMD111065_RS21555 PF08501 Shikimate dehydrogenase substrate binding domain RIMD111065_RS21555 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RIMD111065_RS21560 PF01218 Coproporphyrinogen III oxidase RIMD111065_RS21565 PF01300 Telomere recombination RIMD111065_RS21570 PF00731 AIR carboxylase RIMD111065_RS21575 PF01396 Topoisomerase DNA binding C4 zinc finger RIMD111065_RS21580 PF04361 Protein of unknown function (DUF494) RIMD111065_RS21585 PF17782 DprA winged helix domain RIMD111065_RS21585 PF02481 DNA recombination-mediator protein A RIMD111065_RS21595 PF01327 Polypeptide deformylase RIMD111065_RS21600 PF00551 Formyl transferase RIMD111065_RS21600 PF02911 Formyl transferase, C-terminal domain RIMD111065_RS21605 PF01189 16S rRNA methyltransferase RsmB/F RIMD111065_RS21605 PF01029 NusB family RIMD111065_RS21610 PF02254 TrkA-N domain RIMD111065_RS21610 PF02080 TrkA-C domain RIMD111065_RS21615 PF02386 Cation transport protein RIMD111065_RS21620 PF02646 RmuC family RIMD111065_RS21635 PF02082 Transcriptional regulator RIMD111065_RS21640 PF00294 pfkB family carbohydrate kinase RIMD111065_RS21645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RIMD111065_RS21645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RIMD111065_RS21650 PF00958 GMP synthase C terminal domain RIMD111065_RS21650 PF00117 Glutamine amidotransferase class-I RIMD111065_RS21650 PF02540 NAD synthase RIMD111065_RS21655 PF00171 Aldehyde dehydrogenase family RIMD111065_RS21660 PF00202 Aminotransferase class-III RIMD111065_RS21665 PF01381 Helix-turn-helix RIMD111065_RS21665 PF07883 Cupin domain RIMD111065_RS21670 PF00171 Aldehyde dehydrogenase family RIMD111065_RS21680 PF00892 EamA-like transporter family RIMD111065_RS21685 PF12833 Helix-turn-helix domain RIMD111065_RS21690 PF01810 LysE type translocator RIMD111065_RS21695 PF00689 Cation transporting ATPase, C-terminus RIMD111065_RS21695 PF00690 Cation transporter/ATPase, N-terminus RIMD111065_RS21700 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_RS21700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS21700 PF00672 HAMP domain RIMD111065_RS21705 PF04143 Sulphur transport RIMD111065_RS21710 PF01810 LysE type translocator RIMD111065_RS21720 PF06206 CpeT/CpcT family (DUF1001) RIMD111065_RS21745 PF14001 YdfZ protein RIMD111065_RS21765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS21765 PF03466 LysR substrate binding domain RIMD111065_RS21780 PF13361 UvrD-like helicase C-terminal domain RIMD111065_RS21780 PF00580 UvrD/REP helicase N-terminal domain RIMD111065_RS21785 PF02608 ABC transporter substrate-binding protein PnrA-like RIMD111065_RS21790 PF00005 ABC transporter RIMD111065_RS21795 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_RS21800 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_RS21805 PF03466 LysR substrate binding domain RIMD111065_RS21805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS21810 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_RS21810 PF00107 Zinc-binding dehydrogenase RIMD111065_RS21815 PF00756 Putative esterase RIMD111065_RS21825 PF12867 DinB superfamily RIMD111065_RS21825 PF03781 Sulfatase-modifying factor enzyme 1 RIMD111065_RS21830 PF13593 SBF-like CPA transporter family (DUF4137) RIMD111065_RS21835 PF13520 Amino acid permease RIMD111065_RS21840 PF01588 Putative tRNA binding domain RIMD111065_RS21845 PF13520 Amino acid permease RIMD111065_RS21850 PF04074 YhcH/YjgK/YiaL RIMD111065_RS21855 PF02929 Beta galactosidase small chain RIMD111065_RS21855 PF02837 Glycosyl hydrolases family 2, sugar binding domain RIMD111065_RS21855 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RIMD111065_RS21855 PF00703 Glycosyl hydrolases family 2 RIMD111065_RS21855 PF16353 Domain of unknown function(DUF4981) RIMD111065_RS21860 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS21900 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_RS21905 PF01612 3'-5' exonuclease RIMD111065_RS21905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RIMD111065_RS21905 PF01367 5'-3' exonuclease, C-terminal SAM fold RIMD111065_RS21905 PF00476 DNA polymerase family A RIMD111065_RS21915 PF06005 Cell division protein ZapB RIMD111065_RS21925 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_RS21925 PF06426 Serine acetyltransferase, N-terminal RIMD111065_RS21930 PF16916 Dimerisation domain of Zinc Transporter RIMD111065_RS21930 PF01545 Cation efflux family RIMD111065_RS21935 PF00072 Response regulator receiver domain RIMD111065_RS21935 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS21940 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS21940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS21940 PF00672 HAMP domain RIMD111065_RS21940 PF16527 Two-component sensor protein CpxA, periplasmic domain RIMD111065_RS21945 PF00588 SpoU rRNA Methylase family RIMD111065_RS21950 PF01554 MatE RIMD111065_RS21955 PF02630 SCO1/SenC RIMD111065_RS21965 PF00717 Peptidase S24-like RIMD111065_RS21965 PF01726 LexA DNA binding domain RIMD111065_RS21970 PF01553 Acyltransferase RIMD111065_RS21975 PF01040 UbiA prenyltransferase family RIMD111065_RS21980 PF04345 Chorismate lyase RIMD111065_RS21985 PF03748 Flagellar basal body-associated protein FliL RIMD111065_RS22000 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_RS22000 PF00107 Zinc-binding dehydrogenase RIMD111065_RS22005 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_RS22005 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS22010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_RS22020 PF03611 PTS system sugar-specific permease component RIMD111065_RS22025 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RIMD111065_RS22030 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RIMD111065_RS22035 PF00535 Glycosyl transferase family 2 RIMD111065_RS22040 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RIMD111065_RS22045 PF01467 Cytidylyltransferase-like RIMD111065_RS22050 PF04393 Protein of unknown function (DUF535) RIMD111065_RS22055 PF06827 Zinc finger found in FPG and IleRS RIMD111065_RS22055 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RIMD111065_RS22055 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RIMD111065_RS22065 PF00471 Ribosomal protein L33 RIMD111065_RS22070 PF00830 Ribosomal L28 family RIMD111065_RS22075 PF04002 RadC-like JAB domain RIMD111065_RS22080 PF02441 Flavoprotein RIMD111065_RS22080 PF04127 DNA / pantothenate metabolism flavoprotein RIMD111065_RS22085 PF00692 dUTPase RIMD111065_RS22090 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_RS22095 PF00924 Mechanosensitive ion channel RIMD111065_RS22095 PF05552 Conserved TM helix RIMD111065_RS22105 PF00342 Phosphoglucose isomerase RIMD111065_RS22110 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RIMD111065_RS22110 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RIMD111065_RS22115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_RS22115 PF03466 LysR substrate binding domain RIMD111065_RS22130 PF13607 Succinyl-CoA ligase like flavodoxin domain RIMD111065_RS22130 PF13380 CoA binding domain RIMD111065_RS22130 PF00583 Acetyltransferase (GNAT) family RIMD111065_RS22155 PF12724 Flavodoxin domain RIMD111065_RS22160 PF02386 Cation transport protein RIMD111065_RS22165 PF09186 Domain of unknown function (DUF1949) RIMD111065_RS22165 PF01205 Uncharacterized protein family UPF0029 RIMD111065_RS22170 PF00557 Metallopeptidase family M24 RIMD111065_RS22175 PF00501 AMP-binding enzyme RIMD111065_RS22175 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_RS22180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RIMD111065_RS22180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RIMD111065_RS22180 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_RS22185 PF00108 Thiolase, N-terminal domain RIMD111065_RS22185 PF02803 Thiolase, C-terminal domain RIMD111065_RS22190 PF00072 Response regulator receiver domain RIMD111065_RS22190 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS22195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS22195 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS22195 PF00672 HAMP domain RIMD111065_RS22200 PF01547 Bacterial extracellular solute-binding protein RIMD111065_RS22210 PF01206 Sulfurtransferase TusA RIMD111065_RS22215 PF01042 Endoribonuclease L-PSP RIMD111065_RS22230 PF00691 OmpA family RIMD111065_RS22230 PF13488 Glycine zipper RIMD111065_RS22235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_RS22235 PF02743 Cache domain RIMD111065_RS22235 PF00672 HAMP domain RIMD111065_RS22240 PF03352 Methyladenine glycosylase RIMD111065_RS22245 PF02091 Glycyl-tRNA synthetase alpha subunit RIMD111065_RS22250 PF05746 DALR anticodon binding domain RIMD111065_RS22250 PF02092 Glycyl-tRNA synthetase beta subunit RIMD111065_RS22265 PF01202 Shikimate kinase RIMD111065_RS22285 PF03222 Tryptophan/tyrosine permease family RIMD111065_RS22290 PF12801 4Fe-4S binding domain RIMD111065_RS22300 PF18113 Rubredoxin binding C-terminal domain RIMD111065_RS22300 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_RS22305 PF00301 Rubredoxin RIMD111065_RS22305 PF00258 Flavodoxin RIMD111065_RS22305 PF00753 Metallo-beta-lactamase superfamily RIMD111065_RS22310 PF01590 GAF domain RIMD111065_RS22310 PF00158 Sigma-54 interaction domain RIMD111065_RS22315 PF07702 UTRA domain RIMD111065_RS22315 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_RS22320 PF00367 phosphotransferase system, EIIB RIMD111065_RS22320 PF02378 Phosphotransferase system, EIIC RIMD111065_RS22325 PF11975 Family 4 glycosyl hydrolase C-terminal domain RIMD111065_RS22325 PF02056 Family 4 glycosyl hydrolase RIMD111065_RS22330 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_RS22335 PF13458 Periplasmic binding protein RIMD111065_RS22340 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_RS22345 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_RS22345 PF11862 Domain of unknown function (DUF3382) RIMD111065_RS22350 PF00005 ABC transporter RIMD111065_RS22350 PF12399 Branched-chain amino acid ATP-binding cassette transporter RIMD111065_RS22355 PF00005 ABC transporter RIMD111065_RS22370 PF00581 Rhodanese-like domain RIMD111065_RS22375 PF01694 Rhomboid family RIMD111065_RS22375 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease RIMD111065_RS22380 PF12262 Bacterial virulence factor lipase N-terminal RIMD111065_RS22385 PF04380 Membrane fusogenic activity RIMD111065_RS22390 PF00175 Oxidoreductase NAD-binding domain RIMD111065_RS22395 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RIMD111065_RS22405 PF07497 Rho termination factor, RNA-binding domain RIMD111065_RS22405 PF07498 Rho termination factor, N-terminal domain RIMD111065_RS22405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_RS22410 PF00085 Thioredoxin RIMD111065_RS22415 PF00270 DEAD/DEAH box helicase RIMD111065_RS22415 PF00271 Helicase conserved C-terminal domain RIMD111065_RS22420 PF02541 Ppx/GppA phosphatase family RIMD111065_RS22435 PF04445 Putative SAM-dependent methyltransferase RIMD111065_RS22440 PF00563 EAL domain RIMD111065_RS22440 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_RS22440 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_RS22445 PF01432 Peptidase family M3 RIMD111065_RS22450 PF00490 Delta-aminolevulinic acid dehydratase RIMD111065_RS22455 PF01026 TatD related DNase RIMD111065_RS22460 PF00902 Sec-independent protein translocase protein (TatC) RIMD111065_RS22465 PF02416 mttA/Hcf106 family RIMD111065_RS22470 PF02416 mttA/Hcf106 family RIMD111065_RS22475 PF03109 ABC1 family RIMD111065_RS22480 PF02036 SCP-2 sterol transfer family RIMD111065_RS22485 PF01209 ubiE/COQ5 methyltransferase family RIMD111065_RS22490 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RIMD111065_RS22495 PF07969 Amidohydrolase family RIMD111065_RS22535 PF03544 Gram-negative bacterial TonB protein C-terminal RIMD111065_RS22540 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_RS22545 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS22550 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_RS22560 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_RS22560 PF03472 Autoinducer binding domain RIMD111065_RS22565 PF01380 SIS domain RIMD111065_RS22570 PF00455 DeoR C terminal sensor domain RIMD111065_RS22570 PF08220 DeoR-like helix-turn-helix domain RIMD111065_RS22575 PF00072 Response regulator receiver domain RIMD111065_RS22575 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_RS22580 PF00672 HAMP domain RIMD111065_RS22580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_RS22580 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_RS22585 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_RS22590 PF06123 Inner membrane protein CreD RIMD111065_RS22595 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_RS22595 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_RS22595 PF12804 MobA-like NTP transferase domain RIMD111065_RS22600 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RIMD111065_RS22600 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RIMD111065_RS22605 PF02874 ATP synthase alpha/beta family, beta-barrel domain RIMD111065_RS22605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_RS22610 PF00231 ATP synthase RIMD111065_RS22615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_RS22615 PF00306 ATP synthase alpha/beta chain, C terminal domain RIMD111065_RS22615 PF02874 ATP synthase alpha/beta family, beta-barrel domain RIMD111065_RS22620 PF00213 ATP synthase delta (OSCP) subunit RIMD111065_RS22625 PF00430 ATP synthase B/B' CF(0) RIMD111065_RS22630 PF00137 ATP synthase subunit C RIMD111065_RS22635 PF00119 ATP synthase A chain RIMD111065_RS22645 PF02195 ParB-like nuclease domain RIMD111065_RS22645 PF17762 HTH domain found in ParB protein RIMD111065_RS22650 PF13614 AAA domain RIMD111065_RS22655 PF02527 rRNA small subunit methyltransferase G RIMD111065_RS22660 PF13932 GidA associated domain RIMD111065_RS22660 PF01134 Glucose inhibited division protein A RIMD111065_RS22665 PF00258 Flavodoxin RIMD111065_RS22670 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_RS22670 PF00593 TonB dependent receptor RIMD111065_RS22675 PF00005 ABC transporter RIMD111065_RS22680 PF00005 ABC transporter RIMD111065_RS22690 PF01032 FecCD transport family RIMD111065_RS22695 PF10396 GTP-binding protein TrmE N-terminus RIMD111065_RS22695 PF12631 MnmE helical domain RIMD111065_RS22695 PF01926 50S ribosome-binding GTPase RIMD111065_RS22700 PF14849 YidC periplasmic domain RIMD111065_RS22700 PF02096 60Kd inner membrane protein RIMD111065_RS22705 PF01809 Putative membrane protein insertion efficiency factor RIMD111065_RS22710 PF00825 Ribonuclease P RIMD111065_RS22715 PF00468 Ribosomal protein L34 RIMD111065_RS22720 PF00005 ABC transporter RIMD111065_RS22725 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_RS22730 PF00497 Bacterial extracellular solute-binding proteins, family 3