locus-tag class description HQ397_RS00005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS00005 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS00005 PF18415 Histidine kinase receptor ArcB trans-membrane domain HQ397_RS00005 PF01627 Hpt domain HQ397_RS00005 PF00989 PAS fold HQ397_RS00005 PF00072 Response regulator receiver domain HQ397_RS00010 PF01966 HD domain HQ397_RS00010 PF13286 Phosphohydrolase-associated domain HQ397_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS00020 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS00020 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ397_RS00020 PF00072 Response regulator receiver domain HQ397_RS00025 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS00025 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS00025 PF00563 EAL domain HQ397_RS00040 PF02357 Transcription termination factor nusG HQ397_RS00045 PF03180 NLPA lipoprotein HQ397_RS00050 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS00055 PF09383 NIL domain HQ397_RS00055 PF00005 ABC transporter HQ397_RS00065 PF00480 ROK family HQ397_RS00070 PF08331 Domain of unknown function (DUF1730) HQ397_RS00075 PF01256 Carbohydrate kinase HQ397_RS00075 PF03853 YjeF-related protein N-terminus HQ397_RS00080 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ397_RS00085 PF01520 N-acetylmuramoyl-L-alanine amidase HQ397_RS00090 PF01119 DNA mismatch repair protein, C-terminal domain HQ397_RS00090 PF08676 MutL C terminal dimerisation domain HQ397_RS00100 PF17209 Hfq protein HQ397_RS00105 PF01926 50S ribosome-binding GTPase HQ397_RS00105 PF13167 GTP-binding GTPase N-terminal HQ397_RS00105 PF16360 GTP-binding GTPase Middle Region HQ397_RS00110 PF12221 Bacterial membrane protein N terminal HQ397_RS00110 PF01145 SPFH domain / Band 7 family HQ397_RS00115 PF01145 SPFH domain / Band 7 family HQ397_RS00120 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ397_RS00125 PF00348 Polyprenyl synthetase HQ397_RS00130 PF00829 Ribosomal prokaryotic L21 protein HQ397_RS00135 PF01016 Ribosomal L27 protein HQ397_RS00140 PF01926 50S ribosome-binding GTPase HQ397_RS00140 PF01018 GTP1/OBG HQ397_RS00145 PF07670 Nucleoside recognition HQ397_RS00150 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS00150 PF00501 AMP-binding enzyme HQ397_RS00170 PF00296 Luciferase-like monooxygenase HQ397_RS00180 PF00149 Calcineurin-like phosphoesterase HQ397_RS00185 PF04379 ApaG domain HQ397_RS00190 PF00398 Ribosomal RNA adenine dimethylase HQ397_RS00195 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ397_RS00200 PF09312 SurA N-terminal domain HQ397_RS00200 PF00639 PPIC-type PPIASE domain HQ397_RS00205 PF03968 OstA-like protein HQ397_RS00205 PF04453 LPS transport system D HQ397_RS00210 PF01636 Phosphotransferase enzyme family HQ397_RS00215 PF00483 Nucleotidyl transferase HQ397_RS00220 PF00226 DnaJ domain HQ397_RS00220 PF05099 Tellurite resistance protein TerB HQ397_RS00225 PF00860 Permease family HQ397_RS00235 PF12848 ABC transporter HQ397_RS00235 PF00005 ABC transporter HQ397_RS00250 PF01048 Phosphorylase superfamily HQ397_RS00255 PF01464 Transglycosylase SLT domain HQ397_RS00270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS00270 PF03466 LysR substrate binding domain HQ397_RS00275 PF01048 Phosphorylase superfamily HQ397_RS00280 PF07670 Nucleoside recognition HQ397_RS00280 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_RS00280 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_RS00285 PF01791 DeoC/LacD family aldolase HQ397_RS00295 PF01370 NAD dependent epimerase/dehydratase family HQ397_RS00305 PF00005 ABC transporter HQ397_RS00310 PF01032 FecCD transport family HQ397_RS00320 PF06228 Haem utilisation ChuX/HutX HQ397_RS00325 PF01243 Pyridoxamine 5'-phosphate oxidase HQ397_RS00345 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS00345 PF00593 TonB dependent receptor HQ397_RS00350 PF12832 MFS_1 like family HQ397_RS00355 PF13443 Cro/C1-type HTH DNA-binding domain HQ397_RS00370 PF08329 Chitinase A, N-terminal domain HQ397_RS00370 PF00704 Glycosyl hydrolases family 18 HQ397_RS00375 PF12561 ToxR activated gene A lipoprotein domain HQ397_RS00375 PF17945 Beta/Gamma crystallin HQ397_RS00380 PF18416 N-acetylglucosamine binding protein domain 2 HQ397_RS00380 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ397_RS00385 PF13847 Methyltransferase domain HQ397_RS00390 PF00027 Cyclic nucleotide-binding domain HQ397_RS00390 PF13545 Crp-like helix-turn-helix domain HQ397_RS00395 PF02566 OsmC-like protein HQ397_RS00410 PF00485 Phosphoribulokinase / Uridine kinase family HQ397_RS00415 PF00893 Small Multidrug Resistance protein HQ397_RS00420 PF00892 EamA-like transporter family HQ397_RS00425 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HQ397_RS00430 PF01522 Polysaccharide deacetylase HQ397_RS00435 PF02911 Formyl transferase, C-terminal domain HQ397_RS00435 PF00551 Formyl transferase HQ397_RS00435 PF01370 NAD dependent epimerase/dehydratase family HQ397_RS00440 PF00535 Glycosyl transferase family 2 HQ397_RS00445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ397_RS00450 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ397_RS00450 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ397_RS00450 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ397_RS00455 PF06794 Uncharacterised protein family (UPF0270) HQ397_RS00460 PF00563 EAL domain HQ397_RS00460 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS00460 PF00360 Phytochrome region HQ397_RS00460 PF01590 GAF domain HQ397_RS00465 PF00561 alpha/beta hydrolase fold HQ397_RS00470 PF00072 Response regulator receiver domain HQ397_RS00470 PF01584 CheW-like domain HQ397_RS00480 PF09526 Probable metal-binding protein (DUF2387) HQ397_RS00485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_RS00490 PF04102 SlyX HQ397_RS00500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_RS00500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ397_RS00505 PF02954 Bacterial regulatory protein, Fis family HQ397_RS00505 PF00072 Response regulator receiver domain HQ397_RS00505 PF00158 Sigma-54 interaction domain HQ397_RS00525 PF02872 5'-nucleotidase, C-terminal domain HQ397_RS00525 PF00149 Calcineurin-like phosphoesterase HQ397_RS00530 PF00563 EAL domain HQ397_RS00530 PF12792 CSS motif domain associated with EAL HQ397_RS00540 PF00772 DnaB-like helicase N terminal domain HQ397_RS00540 PF03796 DnaB-like helicase C terminal domain HQ397_RS00545 PF00842 Alanine racemase, C-terminal domain HQ397_RS00545 PF01168 Alanine racemase, N-terminal domain HQ397_RS00550 PF12838 4Fe-4S dicluster domain HQ397_RS00555 PF01136 Peptidase family U32 HQ397_RS00555 PF16325 Peptidase family U32 C-terminal domain HQ397_RS00560 PF00563 EAL domain HQ397_RS00560 PF01590 GAF domain HQ397_RS00560 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS00560 PF00989 PAS fold HQ397_RS00585 PF00266 Aminotransferase class-V HQ397_RS00590 PF01339 CheB methylesterase HQ397_RS00590 PF00072 Response regulator receiver domain HQ397_RS00595 PF03975 CheD chemotactic sensory transduction HQ397_RS00600 PF01739 CheR methyltransferase, SAM binding domain HQ397_RS00600 PF03705 CheR methyltransferase, all-alpha domain HQ397_RS00605 PF02203 Tar ligand binding domain homologue HQ397_RS00605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS00605 PF00672 HAMP domain HQ397_RS00610 PF01584 CheW-like domain HQ397_RS00615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS00615 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS00615 PF00672 HAMP domain HQ397_RS00620 PF01584 CheW-like domain HQ397_RS00620 PF02895 Signal transducing histidine kinase, homodimeric domain HQ397_RS00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS00620 PF01627 Hpt domain HQ397_RS00620 PF07194 P2 response regulator binding domain HQ397_RS00630 PF00072 Response regulator receiver domain HQ397_RS00635 PF02743 Cache domain HQ397_RS00635 PF00672 HAMP domain HQ397_RS00635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS00640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ397_RS00640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ397_RS00645 PF03466 LysR substrate binding domain HQ397_RS00645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS00650 PF01810 LysE type translocator HQ397_RS00655 PF01136 Peptidase family U32 HQ397_RS00655 PF12392 Collagenase HQ397_RS00665 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ397_RS00665 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ397_RS00680 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HQ397_RS00705 PF00106 short chain dehydrogenase HQ397_RS00710 PF03573 outer membrane porin, OprD family HQ397_RS00715 PF02743 Cache domain HQ397_RS00715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS00715 PF00672 HAMP domain HQ397_RS00720 PF00892 EamA-like transporter family HQ397_RS00750 PF00800 Prephenate dehydratase HQ397_RS00750 PF01817 Chorismate mutase type II HQ397_RS00780 PF08349 Protein of unknown function (DUF1722) HQ397_RS00785 PF13411 MerR HTH family regulatory protein HQ397_RS00790 PF03441 FAD binding domain of DNA photolyase HQ397_RS00790 PF00875 DNA photolyase HQ397_RS00800 PF00106 short chain dehydrogenase HQ397_RS00840 PF00210 Ferritin-like domain HQ397_RS00845 PF03063 Prismane/CO dehydrogenase family HQ397_RS00850 PF00970 Oxidoreductase FAD-binding domain HQ397_RS00850 PF00042 Globin HQ397_RS00850 PF00175 Oxidoreductase NAD-binding domain HQ397_RS00855 PF16363 GDP-mannose 4,6 dehydratase HQ397_RS00860 PF06965 Na+/H+ antiporter 1 HQ397_RS00860 PF13462 Thioredoxin HQ397_RS00875 PF05860 haemagglutination activity domain HQ397_RS00875 PF14436 Bacterial EndoU nuclease HQ397_RS00875 PF04829 Pre-toxin domain with VENN motif HQ397_RS00875 PF13332 Hemagglutinin repeat HQ397_RS00875 PF05594 Haemagluttinin repeat HQ397_RS00880 PF05594 Haemagluttinin repeat HQ397_RS00880 PF04829 Pre-toxin domain with VENN motif HQ397_RS00880 PF13332 Hemagglutinin repeat HQ397_RS00930 PF03472 Autoinducer binding domain HQ397_RS00930 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS00935 PF05638 Type VI secretion system effector, Hcp HQ397_RS00945 PF04717 Type VI secretion system, phage-baseplate injector HQ397_RS00950 PF13503 Domain of unknown function (DUF4123) HQ397_RS00975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS00975 PF03466 LysR substrate binding domain HQ397_RS00980 PF03306 Alpha-acetolactate decarboxylase HQ397_RS00985 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_RS00985 PF00205 Thiamine pyrophosphate enzyme, central domain HQ397_RS00985 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_RS00990 PF01965 DJ-1/PfpI family HQ397_RS00995 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ397_RS00995 PF02558 Ketopantoate reductase PanE/ApbA HQ397_RS01000 PF04461 Protein of unknown function (DUF520) HQ397_RS01005 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ397_RS01010 PF07690 Major Facilitator Superfamily HQ397_RS01020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ397_RS01030 PF05175 Methyltransferase small domain HQ397_RS01035 PF01722 BolA-like protein HQ397_RS01040 PF11973 NQRA C-terminal domain HQ397_RS01040 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ397_RS01045 PF03116 NQR2, RnfD, RnfE family HQ397_RS01050 PF04205 FMN-binding domain HQ397_RS01055 PF02508 Rnf-Nqr subunit, membrane protein HQ397_RS01060 PF02508 Rnf-Nqr subunit, membrane protein HQ397_RS01065 PF00175 Oxidoreductase NAD-binding domain HQ397_RS01065 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_RS01065 PF00970 Oxidoreductase FAD-binding domain HQ397_RS01070 PF02424 ApbE family HQ397_RS01085 PF11798 IMS family HHH motif HQ397_RS01085 PF11799 impB/mucB/samB family C-terminal domain HQ397_RS01085 PF00817 impB/mucB/samB family HQ397_RS01090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS01090 PF00672 HAMP domain HQ397_RS01095 PF03466 LysR substrate binding domain HQ397_RS01095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS01105 PF04241 Protein of unknown function (DUF423) HQ397_RS01110 PF18125 RlmM ferredoxin-like domain HQ397_RS01110 PF01728 FtsJ-like methyltransferase HQ397_RS01125 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ397_RS01125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ397_RS01130 PF03641 Possible lysine decarboxylase HQ397_RS01130 PF11892 Domain of unknown function (DUF3412) HQ397_RS01130 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HQ397_RS01135 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS01145 PF14489 QueF-like protein HQ397_RS01145 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ397_RS01150 PF07348 Syd protein (SUKH-2) HQ397_RS01155 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ397_RS01180 PF04287 tRNA pseudouridine synthase C HQ397_RS01185 PF00849 RNA pseudouridylate synthase HQ397_RS01190 PF00258 Flavodoxin HQ397_RS01195 PF02264 LamB porin HQ397_RS01200 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ397_RS01205 PF02378 Phosphotransferase system, EIIC HQ397_RS01205 PF00367 phosphotransferase system, EIIB HQ397_RS01210 PF11944 Protein of unknown function (DUF3461) HQ397_RS01215 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ397_RS01215 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_RS01215 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_RS01220 PF01966 HD domain HQ397_RS01220 PF01909 Nucleotidyltransferase domain HQ397_RS01220 PF08335 GlnD PII-uridylyltransferase HQ397_RS01220 PF01842 ACT domain HQ397_RS01225 PF00557 Metallopeptidase family M24 HQ397_RS01230 PF00318 Ribosomal protein S2 HQ397_RS01235 PF00889 Elongation factor TS HQ397_RS01240 PF00696 Amino acid kinase family HQ397_RS01245 PF01765 Ribosome recycling factor HQ397_RS01250 PF01255 Putative undecaprenyl diphosphate synthase HQ397_RS01260 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ397_RS01260 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ397_RS01260 PF13288 DXP reductoisomerase C-terminal domain HQ397_RS01265 PF17820 PDZ domain HQ397_RS01265 PF02163 Peptidase family M50 HQ397_RS01270 PF07244 Surface antigen variable number repeat HQ397_RS01270 PF01103 Surface antigen HQ397_RS01275 PF03938 Outer membrane protein (OmpH-like) HQ397_RS01280 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_RS01280 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ397_RS01285 PF07977 FabA-like domain HQ397_RS01290 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ397_RS01290 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_RS01295 PF02684 Lipid-A-disaccharide synthetase HQ397_RS01300 PF01351 Ribonuclease HII HQ397_RS01305 PF02811 PHP domain HQ397_RS01305 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ397_RS01305 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ397_RS01305 PF14579 Helix-hairpin-helix motif HQ397_RS01305 PF01336 OB-fold nucleic acid binding domain HQ397_RS01310 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ397_RS01325 PF13520 Amino acid permease HQ397_RS01330 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ397_RS01330 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ397_RS01330 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ397_RS01335 PF08543 Phosphomethylpyrimidine kinase HQ397_RS01345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS01345 PF03466 LysR substrate binding domain HQ397_RS01355 PF12706 Beta-lactamase superfamily domain HQ397_RS01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS01360 PF03466 LysR substrate binding domain HQ397_RS01365 PF13520 Amino acid permease HQ397_RS01390 PF01431 Peptidase family M13 HQ397_RS01390 PF05649 Peptidase family M13 HQ397_RS01395 PF01171 PP-loop family HQ397_RS01395 PF09179 TilS substrate binding domain HQ397_RS01395 PF11734 TilS substrate C-terminal domain HQ397_RS01400 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS01405 PF02254 TrkA-N domain HQ397_RS01405 PF02080 TrkA-C domain HQ397_RS01405 PF00999 Sodium/hydrogen exchanger family HQ397_RS01430 PF00072 Response regulator receiver domain HQ397_RS01430 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS01440 PF00128 Alpha amylase, catalytic domain HQ397_RS01455 PF00535 Glycosyl transferase family 2 HQ397_RS01470 PF01471 Putative peptidoglycan binding domain HQ397_RS01470 PF03734 L,D-transpeptidase catalytic domain HQ397_RS01475 PF05951 Bacterial protein of unknown function (DUF882) HQ397_RS01485 PF03458 UPF0126 domain HQ397_RS01500 PF04354 ZipA, C-terminal FtsZ-binding domain HQ397_RS01505 PF01653 NAD-dependent DNA ligase adenylation domain HQ397_RS01505 PF12826 Helix-hairpin-helix motif HQ397_RS01505 PF03120 NAD-dependent DNA ligase OB-fold domain HQ397_RS01505 PF00533 BRCA1 C Terminus (BRCT) domain HQ397_RS01505 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ397_RS01515 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ397_RS01515 PF03477 ATP cone domain HQ397_RS01525 PF01679 Proteolipid membrane potential modulator HQ397_RS01550 PF00529 HlyD membrane-fusion protein of T1SS HQ397_RS01550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS01570 PF00390 Malic enzyme, N-terminal domain HQ397_RS01570 PF03949 Malic enzyme, NAD binding domain HQ397_RS01580 PF00072 Response regulator receiver domain HQ397_RS01580 PF12431 Transcriptional regulator HQ397_RS01595 PF00892 EamA-like transporter family HQ397_RS01610 PF00158 Sigma-54 interaction domain HQ397_RS01610 PF01590 GAF domain HQ397_RS01610 PF02954 Bacterial regulatory protein, Fis family HQ397_RS01615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_RS01615 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_RS01615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_RS01620 PF02515 CoA-transferase family III HQ397_RS01625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_RS01630 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS01630 PF00072 Response regulator receiver domain HQ397_RS01640 PF12849 PBP superfamily domain HQ397_RS01645 PF01435 Peptidase family M48 HQ397_RS01655 PF00480 ROK family HQ397_RS01665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_RS01665 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ397_RS01670 PF00005 ABC transporter HQ397_RS01685 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS01690 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS01695 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS01700 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS01705 PF00005 ABC transporter HQ397_RS01715 PF00293 NUDIX domain HQ397_RS01725 PF08534 Redoxin HQ397_RS01730 PF01699 Sodium/calcium exchanger protein HQ397_RS01735 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ397_RS01735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ397_RS01740 PF01235 Sodium:alanine symporter family HQ397_RS01750 PF00860 Permease family HQ397_RS01755 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS01755 PF00072 Response regulator receiver domain HQ397_RS01760 PF10692 Protein of unknown function (DUF2498) HQ397_RS01765 PF01554 MatE HQ397_RS01770 PF12833 Helix-turn-helix domain HQ397_RS01775 PF00390 Malic enzyme, N-terminal domain HQ397_RS01775 PF03949 Malic enzyme, NAD binding domain HQ397_RS01780 PF00691 OmpA family HQ397_RS01780 PF01389 OmpA-like transmembrane domain HQ397_RS01785 PF01389 OmpA-like transmembrane domain HQ397_RS01785 PF00691 OmpA family HQ397_RS01790 PF00691 OmpA family HQ397_RS01790 PF01389 OmpA-like transmembrane domain HQ397_RS01805 PF00209 Sodium:neurotransmitter symporter family HQ397_RS01810 PF01734 Patatin-like phospholipase HQ397_RS01815 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS01820 PF00529 HlyD membrane-fusion protein of T1SS HQ397_RS01820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS01835 PF11842 Domain of unknown function (DUF3362) HQ397_RS01835 PF08497 Radical SAM N-terminal HQ397_RS01835 PF04055 Radical SAM superfamily HQ397_RS01870 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ397_RS01875 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ397_RS01880 PF00230 Major intrinsic protein HQ397_RS01885 PF01551 Peptidase family M23 HQ397_RS01885 PF10145 Phage-related minor tail protein HQ397_RS01885 PF01464 Transglycosylase SLT domain HQ397_RS01890 PF00128 Alpha amylase, catalytic domain HQ397_RS01895 PF01551 Peptidase family M23 HQ397_RS01920 PF01842 ACT domain HQ397_RS01920 PF00551 Formyl transferase HQ397_RS01925 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ397_RS01935 PF00085 Thioredoxin HQ397_RS01940 PF01648 4'-phosphopantetheinyl transferase superfamily HQ397_RS01945 PF00877 NlpC/P60 family HQ397_RS01965 PF03734 L,D-transpeptidase catalytic domain HQ397_RS01965 PF01476 LysM domain HQ397_RS01965 PF17969 L,D-transpeptidase C-terminal domain HQ397_RS01975 PF03466 LysR substrate binding domain HQ397_RS01975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS01980 PF02634 FdhD/NarQ family HQ397_RS01985 PF00384 Molybdopterin oxidoreductase HQ397_RS02005 PF02342 TerD domain HQ397_RS02035 PF00005 ABC transporter HQ397_RS02050 PF03781 Sulfatase-modifying factor enzyme 1 HQ397_RS02075 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS02080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_RS02080 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_RS02080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_RS02080 PF09317 Domain of unknown function (DUF1974) HQ397_RS02085 PF00873 AcrB/AcrD/AcrF family HQ397_RS02095 PF00224 Pyruvate kinase, barrel domain HQ397_RS02095 PF02887 Pyruvate kinase, alpha/beta domain HQ397_RS02100 PF01418 Helix-turn-helix domain, rpiR family HQ397_RS02100 PF01380 SIS domain HQ397_RS02105 PF02685 Glucokinase HQ397_RS02110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS02115 PF00072 Response regulator receiver domain HQ397_RS02115 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS02125 PF00072 Response regulator receiver domain HQ397_RS02135 PF02049 Flagellar hook-basal body complex protein FliE HQ397_RS02140 PF01514 Secretory protein of YscJ/FliF family HQ397_RS02140 PF08345 Flagellar M-ring protein C-terminal HQ397_RS02145 PF14842 FliG N-terminal domain HQ397_RS02145 PF01706 FliG C-terminal domain HQ397_RS02145 PF14841 FliG middle domain HQ397_RS02155 PF18269 T3SS EscN ATPase C-terminal domain HQ397_RS02155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_RS02175 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_RS02175 PF02154 Flagellar motor switch protein FliM HQ397_RS02180 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_RS02185 PF04347 Flagellar biosynthesis protein, FliO HQ397_RS02190 PF00813 FliP family HQ397_RS02195 PF01313 Bacterial export proteins, family 3 HQ397_RS02200 PF01311 Bacterial export proteins, family 1 HQ397_RS02205 PF01312 FlhB HrpN YscU SpaS Family HQ397_RS02210 PF00771 FHIPEP family HQ397_RS02215 PF00448 SRP54-type protein, GTPase domain HQ397_RS02220 PF10609 NUBPL iron-transfer P-loop NTPase HQ397_RS02225 PF04542 Sigma-70 region 2 HQ397_RS02225 PF04539 Sigma-70 region 3 HQ397_RS02225 PF04545 Sigma-70, region 4 HQ397_RS02230 PF00072 Response regulator receiver domain HQ397_RS02235 PF04344 Chemotaxis phosphatase, CheZ HQ397_RS02240 PF01584 CheW-like domain HQ397_RS02240 PF02895 Signal transducing histidine kinase, homodimeric domain HQ397_RS02240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS02240 PF01627 Hpt domain HQ397_RS02240 PF00072 Response regulator receiver domain HQ397_RS02250 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS02255 PF00691 OmpA family HQ397_RS02255 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_RS02270 PF01584 CheW-like domain HQ397_RS02280 PF00005 ABC transporter HQ397_RS02290 PF01578 Cytochrome C assembly protein HQ397_RS02295 PF04995 Heme exporter protein D (CcmD) HQ397_RS02300 PF03100 CcmE HQ397_RS02305 PF01578 Cytochrome C assembly protein HQ397_RS02305 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ397_RS02310 PF08534 Redoxin HQ397_RS02315 PF03918 Cytochrome C biogenesis protein HQ397_RS02325 PF04333 MlaA lipoprotein HQ397_RS02330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ397_RS02330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ397_RS02335 PF00462 Glutaredoxin HQ397_RS02340 PF01189 16S rRNA methyltransferase RsmB/F HQ397_RS02340 PF01029 NusB family HQ397_RS02355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ397_RS02355 PF01243 Pyridoxamine 5'-phosphate oxidase HQ397_RS02360 PF02798 Glutathione S-transferase, N-terminal domain HQ397_RS02370 PF13508 Acetyltransferase (GNAT) domain HQ397_RS02380 PF08007 Cupin superfamily protein HQ397_RS02385 PF00206 Lyase HQ397_RS02385 PF08328 Adenylosuccinate lyase C-terminal HQ397_RS02390 PF04356 Protein of unknown function (DUF489) HQ397_RS02400 PF00293 NUDIX domain HQ397_RS02405 PF00849 RNA pseudouridylate synthase HQ397_RS02415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_RS02415 PF02378 Phosphotransferase system, EIIC HQ397_RS02415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_RS02420 PF07690 Major Facilitator Superfamily HQ397_RS02430 PF09013 YopH, N-terminal HQ397_RS02435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_RS02435 PF02378 Phosphotransferase system, EIIC HQ397_RS02435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_RS02465 PF00583 Acetyltransferase (GNAT) family HQ397_RS02485 PF00376 MerR family regulatory protein HQ397_RS02485 PF09278 MerR, DNA binding HQ397_RS02490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_RS02490 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS02495 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_RS02495 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS02500 PF02378 Phosphotransferase system, EIIC HQ397_RS02500 PF00367 phosphotransferase system, EIIB HQ397_RS02505 PF00155 Aminotransferase class I and II HQ397_RS02530 PF01238 Phosphomannose isomerase type I HQ397_RS02540 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ397_RS02550 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS02555 PF02447 GntP family permease HQ397_RS02560 PF03466 LysR substrate binding domain HQ397_RS02560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS02565 PF00480 ROK family HQ397_RS02570 PF13181 Tetratricopeptide repeat HQ397_RS02570 PF17128 Domain of unknown function (DUF5107) HQ397_RS02575 PF00083 Sugar (and other) transporter HQ397_RS02590 PF01668 SmpB protein HQ397_RS02595 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ397_RS02600 PF03658 RnfH family Ubiquitin HQ397_RS02605 PF13460 NAD(P)H-binding HQ397_RS02610 PF04355 SmpA / OmlA family HQ397_RS02615 PF00465 Iron-containing alcohol dehydrogenase HQ397_RS02620 PF01048 Phosphorylase superfamily HQ397_RS02625 PF00849 RNA pseudouridylate synthase HQ397_RS02630 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ397_RS02645 PF07509 Protein of unknown function (DUF1523) HQ397_RS02650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS02650 PF00672 HAMP domain HQ397_RS02655 PF01810 LysE type translocator HQ397_RS02665 PF02080 TrkA-C domain HQ397_RS02665 PF00999 Sodium/hydrogen exchanger family HQ397_RS02665 PF03471 Transporter associated domain HQ397_RS02685 PF02557 D-alanyl-D-alanine carboxypeptidase HQ397_RS02690 PF01546 Peptidase family M20/M25/M40 HQ397_RS02690 PF07687 Peptidase dimerisation domain HQ397_RS02695 PF03960 ArsC family HQ397_RS02700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS02700 PF03466 LysR substrate binding domain HQ397_RS02710 PF03606 C4-dicarboxylate anaerobic carrier HQ397_RS02725 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ397_RS02730 PF00152 tRNA synthetases class II (D, K and N) HQ397_RS02730 PF01336 OB-fold nucleic acid binding domain HQ397_RS02750 PF06968 Biotin and Thiamin Synthesis associated domain HQ397_RS02750 PF04055 Radical SAM superfamily HQ397_RS02755 PF00155 Aminotransferase class I and II HQ397_RS02760 PF08241 Methyltransferase domain HQ397_RS02760 PF12697 Alpha/beta hydrolase family HQ397_RS02770 PF01435 Peptidase family M48 HQ397_RS02775 PF08447 PAS fold HQ397_RS02775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS02775 PF13426 PAS domain HQ397_RS02780 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_RS02780 PF03473 MOSC domain HQ397_RS02780 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_RS02780 PF03476 MOSC N-terminal beta barrel domain HQ397_RS02780 PF03473 MOSC domain HQ397_RS02780 PF03476 MOSC N-terminal beta barrel domain HQ397_RS02785 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS02785 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ397_RS02785 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ397_RS02790 PF10371 Domain of unknown function HQ397_RS02790 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ397_RS02790 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ397_RS02790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_RS02790 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ397_RS02795 PF01804 Penicillin amidase HQ397_RS02800 PF12833 Helix-turn-helix domain HQ397_RS02800 PF07883 Cupin domain HQ397_RS02815 PF01554 MatE HQ397_RS02835 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS02845 PF00465 Iron-containing alcohol dehydrogenase HQ397_RS02855 PF08359 YsiA-like protein, C-terminal region HQ397_RS02855 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS02860 PF00171 Aldehyde dehydrogenase family HQ397_RS02870 PF00877 NlpC/P60 family HQ397_RS02875 PF07968 Leukocidin/Hemolysin toxin family HQ397_RS02875 PF12563 Hemolytic toxin N terminal HQ397_RS02885 PF00578 AhpC/TSA family HQ397_RS02885 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ397_RS02905 PF08003 Protein of unknown function (DUF1698) HQ397_RS02910 PF13649 Methyltransferase domain HQ397_RS02915 PF01904 Protein of unknown function DUF72 HQ397_RS02920 PF02938 GAD domain HQ397_RS02920 PF01336 OB-fold nucleic acid binding domain HQ397_RS02920 PF00152 tRNA synthetases class II (D, K and N) HQ397_RS02925 PF01709 Transcriptional regulator HQ397_RS02930 PF08019 Phosphoethanolamine transferase EptA/EptB HQ397_RS02930 PF00884 Sulfatase HQ397_RS02935 PF01047 MarR family HQ397_RS02935 PF00480 ROK family HQ397_RS02940 PF01979 Amidohydrolase family HQ397_RS02945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ397_RS02950 PF02378 Phosphotransferase system, EIIC HQ397_RS02950 PF00367 phosphotransferase system, EIIB HQ397_RS02950 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ397_RS02955 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HQ397_RS02955 PF02838 Glycosyl hydrolase family 20, domain 2 HQ397_RS02955 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ397_RS02955 PF03173 Putative carbohydrate binding domain HQ397_RS02965 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_RS02965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ397_RS02970 PF01475 Ferric uptake regulator family HQ397_RS02980 PF00258 Flavodoxin HQ397_RS02985 PF01402 Ribbon-helix-helix protein, copG family HQ397_RS02995 PF12697 Alpha/beta hydrolase family HQ397_RS03000 PF03925 SeqA protein C-terminal domain HQ397_RS03000 PF17206 SeqA protein N-terminal domain HQ397_RS03005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ397_RS03005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ397_RS03005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ397_RS03005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ397_RS03015 PF01047 MarR family HQ397_RS03020 PF13406 Transglycosylase SLT domain HQ397_RS03025 PF01066 CDP-alcohol phosphatidyltransferase HQ397_RS03030 PF00005 ABC transporter HQ397_RS03040 PF13416 Bacterial extracellular solute-binding protein HQ397_RS03045 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS03045 PF00403 Heavy-metal-associated domain HQ397_RS03045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_RS03050 PF02627 Carboxymuconolactone decarboxylase family HQ397_RS03060 PF01625 Peptide methionine sulfoxide reductase HQ397_RS03075 PF01103 Surface antigen HQ397_RS03075 PF07244 Surface antigen variable number repeat HQ397_RS03075 PF17243 POTRA domain TamA domain 1 HQ397_RS03100 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ397_RS03110 PF01464 Transglycosylase SLT domain HQ397_RS03110 PF14718 Soluble lytic murein transglycosylase L domain HQ397_RS03115 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS03125 PF03061 Thioesterase superfamily HQ397_RS03135 PF03372 Endonuclease/Exonuclease/phosphatase family HQ397_RS03140 PF01476 LysM domain HQ397_RS03140 PF01464 Transglycosylase SLT domain HQ397_RS03145 PF00753 Metallo-beta-lactamase superfamily HQ397_RS03145 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ397_RS03150 PF08241 Methyltransferase domain HQ397_RS03155 PF00075 RNase H HQ397_RS03160 PF00929 Exonuclease HQ397_RS03170 PF02541 Ppx/GppA phosphatase family HQ397_RS03175 PF02503 Polyphosphate kinase middle domain HQ397_RS03175 PF13090 Polyphosphate kinase C-terminal domain 2 HQ397_RS03175 PF17941 Polyphosphate kinase C-terminal domain 1 HQ397_RS03175 PF13089 Polyphosphate kinase N-terminal domain HQ397_RS03180 PF01842 ACT domain HQ397_RS03190 PF06490 Flagellar regulatory protein FleQ HQ397_RS03190 PF02954 Bacterial regulatory protein, Fis family HQ397_RS03190 PF00158 Sigma-54 interaction domain HQ397_RS03195 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS03195 PF13188 PAS domain HQ397_RS03200 PF02954 Bacterial regulatory protein, Fis family HQ397_RS03200 PF00158 Sigma-54 interaction domain HQ397_RS03200 PF00072 Response regulator receiver domain HQ397_RS03205 PF01784 NIF3 (NGG1p interacting factor 3) HQ397_RS03210 PF00551 Formyl transferase HQ397_RS03215 PF02769 AIR synthase related protein, C-terminal domain HQ397_RS03215 PF00586 AIR synthase related protein, N-terminal domain HQ397_RS03230 PF00308 Bacterial dnaA protein HQ397_RS03235 PF00463 Isocitrate lyase family HQ397_RS03240 PF01274 Malate synthase HQ397_RS03255 PF14437 MafB19-like deaminase HQ397_RS03260 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS03265 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS03270 PF00005 ABC transporter HQ397_RS03275 PF01895 PhoU domain HQ397_RS03280 PF01595 Cyclin M transmembrane N-terminal domain HQ397_RS03280 PF00571 CBS domain HQ397_RS03280 PF03471 Transporter associated domain HQ397_RS03290 PF02574 Homocysteine S-methyltransferase HQ397_RS03290 PF02310 B12 binding domain HQ397_RS03290 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ397_RS03290 PF02607 B12 binding domain HQ397_RS03290 PF00809 Pterin binding enzyme HQ397_RS03295 PF13520 Amino acid permease HQ397_RS03300 PF04116 Fatty acid hydroxylase superfamily HQ397_RS03310 PF00005 ABC transporter HQ397_RS03315 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS03320 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS03325 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS03330 PF07690 Major Facilitator Superfamily HQ397_RS03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS03335 PF07730 Histidine kinase HQ397_RS03335 PF05231 MASE1 HQ397_RS03340 PF00072 Response regulator receiver domain HQ397_RS03340 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS03345 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ397_RS03345 PF14760 Rnk N-terminus HQ397_RS03360 PF00245 Alkaline phosphatase HQ397_RS03365 PF00245 Alkaline phosphatase HQ397_RS03370 PF01926 50S ribosome-binding GTPase HQ397_RS03375 PF07690 Major Facilitator Superfamily HQ397_RS03380 PF00850 Histone deacetylase domain HQ397_RS03390 PF13307 Helicase C-terminal domain HQ397_RS03390 PF06733 DEAD_2 HQ397_RS03395 PF13609 Gram-negative porin HQ397_RS03405 PF00155 Aminotransferase class I and II HQ397_RS03410 PF00899 ThiF family HQ397_RS03415 PF03453 MoeA N-terminal region (domain I and II) HQ397_RS03415 PF03454 MoeA C-terminal region (domain IV) HQ397_RS03415 PF00994 Probable molybdopterin binding domain HQ397_RS03420 PF01227 GTP cyclohydrolase I HQ397_RS03425 PF17200 Single Cache domain 2 HQ397_RS03425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS03425 PF00672 HAMP domain HQ397_RS03430 PF01268 Formate--tetrahydrofolate ligase HQ397_RS03440 PF03466 LysR substrate binding domain HQ397_RS03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS03445 PF04264 YceI-like domain HQ397_RS03470 PF01546 Peptidase family M20/M25/M40 HQ397_RS03470 PF07687 Peptidase dimerisation domain HQ397_RS03480 PF17944 Arginine decarboxylase C-terminal helical extension HQ397_RS03480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ397_RS03480 PF17810 Arginine decarboxylase helical bundle domain HQ397_RS03500 PF00672 HAMP domain HQ397_RS03500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS03510 PF01042 Endoribonuclease L-PSP HQ397_RS03515 PF03313 Serine dehydratase alpha chain HQ397_RS03520 PF13309 HTH domain HQ397_RS03520 PF08348 YheO-like PAS domain HQ397_RS03525 PF00300 Histidine phosphatase superfamily (branch 1) HQ397_RS03530 PF01844 HNH endonuclease HQ397_RS03540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_RS03550 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain HQ397_RS03550 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HQ397_RS03555 PF01479 S4 domain HQ397_RS03555 PF00849 RNA pseudouridylate synthase HQ397_RS03560 PF09102 Exotoxin A, targeting HQ397_RS03560 PF09009 Exotoxin A catalytic HQ397_RS03560 PF09101 Exotoxin A binding HQ397_RS03565 PF07690 Major Facilitator Superfamily HQ397_RS03575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS03575 PF03466 LysR substrate binding domain HQ397_RS03580 PF07690 Major Facilitator Superfamily HQ397_RS03590 PF10689 Protein of unknown function (DUF2496) HQ397_RS03595 PF03061 Thioesterase superfamily HQ397_RS03605 PF04391 Protein of unknown function (DUF533) HQ397_RS03615 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS03615 PF00155 Aminotransferase class I and II HQ397_RS03620 PF01654 Cytochrome bd terminal oxidase subunit I HQ397_RS03625 PF02322 Cytochrome bd terminal oxidase subunit II HQ397_RS03635 PF07690 Major Facilitator Superfamily HQ397_RS03640 PF00248 Aldo/keto reductase family HQ397_RS03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS03660 PF03466 LysR substrate binding domain HQ397_RS03665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ397_RS03665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ397_RS03670 PF00230 Major intrinsic protein HQ397_RS03675 PF07690 Major Facilitator Superfamily HQ397_RS03680 PF00455 DeoR C terminal sensor domain HQ397_RS03680 PF08220 DeoR-like helix-turn-helix domain HQ397_RS03690 PF01266 FAD dependent oxidoreductase HQ397_RS03690 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HQ397_RS03695 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ397_RS03700 PF00793 DAHP synthetase I family HQ397_RS03705 PF02153 Prephenate dehydrogenase HQ397_RS03705 PF01817 Chorismate mutase type II HQ397_RS03710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS03710 PF03466 LysR substrate binding domain HQ397_RS03715 PF04219 Protein of unknown function, DUF HQ397_RS03720 PF03974 Ecotin HQ397_RS03740 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ397_RS03740 PF00326 Prolyl oligopeptidase family HQ397_RS03745 PF00593 TonB dependent receptor HQ397_RS03745 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS03755 PF07208 Protein of unknown function (DUF1414) HQ397_RS03760 PF04245 37-kD nucleoid-associated bacterial protein HQ397_RS03765 PF01547 Bacterial extracellular solute-binding protein HQ397_RS03770 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS03770 PF14785 Maltose transport system permease protein MalF P2 domain HQ397_RS03775 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS03780 PF00005 ABC transporter HQ397_RS03780 PF08402 TOBE domain HQ397_RS03785 PF03976 Polyphosphate kinase 2 (PPK2) HQ397_RS03790 PF00561 alpha/beta hydrolase fold HQ397_RS03805 PF01206 Sulfurtransferase TusA HQ397_RS03810 PF01435 Peptidase family M48 HQ397_RS03810 PF13181 Tetratricopeptide repeat HQ397_RS03815 PF00578 AhpC/TSA family HQ397_RS03820 PF03960 ArsC family HQ397_RS03835 PF04336 Acyl carrier protein phosphodiesterase HQ397_RS03840 PF01979 Amidohydrolase family HQ397_RS03845 PF03956 Lysine exporter LysO HQ397_RS03850 PF00005 ABC transporter HQ397_RS03855 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS03860 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS03865 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS03875 PF04055 Radical SAM superfamily HQ397_RS03880 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS03880 PF00563 EAL domain HQ397_RS03880 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS03885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_RS03885 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS03895 PF00905 Penicillin binding protein transpeptidase domain HQ397_RS03895 PF06832 Penicillin-Binding Protein C-terminus Family HQ397_RS03895 PF00912 Transglycosylase HQ397_RS03905 PF00589 Phage integrase family HQ397_RS03905 PF12167 Arm DNA-binding domain HQ397_RS03960 PF04381 Putative exonuclease, RdgC HQ397_RS03995 PF12684 PDDEXK-like domain of unknown function (DUF3799) HQ397_RS03995 PF06630 Enterobacterial exodeoxyribonuclease VIII HQ397_RS04050 PF00145 C-5 cytosine-specific DNA methylase HQ397_RS04080 PF05772 NinB protein HQ397_RS04085 PF00149 Calcineurin-like phosphoesterase HQ397_RS04285 PF02926 THUMP domain HQ397_RS04285 PF02568 Thiamine biosynthesis protein (ThiI) HQ397_RS04295 PF03458 UPF0126 domain HQ397_RS04300 PF00669 Bacterial flagellin N-terminal helical region HQ397_RS04300 PF07196 Flagellin hook IN motif HQ397_RS04300 PF00700 Bacterial flagellin C-terminal helical region HQ397_RS04305 PF07196 Flagellin hook IN motif HQ397_RS04305 PF00669 Bacterial flagellin N-terminal helical region HQ397_RS04305 PF00700 Bacterial flagellin C-terminal helical region HQ397_RS04315 PF07196 Flagellin hook IN motif HQ397_RS04315 PF02465 Flagellar hook-associated protein 2 N-terminus HQ397_RS04315 PF07195 Flagellar hook-associated protein 2 C-terminus HQ397_RS04320 PF02561 Flagellar protein FliS HQ397_RS04335 PF01497 Periplasmic binding protein HQ397_RS04345 PF01048 Phosphorylase superfamily HQ397_RS04355 PF02535 ZIP Zinc transporter HQ397_RS04360 PF00672 HAMP domain HQ397_RS04360 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS04360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS04365 PF00459 Inositol monophosphatase family HQ397_RS04375 PF02798 Glutathione S-transferase, N-terminal domain HQ397_RS04375 PF00043 Glutathione S-transferase, C-terminal domain HQ397_RS04380 PF07690 Major Facilitator Superfamily HQ397_RS04390 PF05164 Cell division protein ZapA HQ397_RS04395 PF03695 Uncharacterised protein family (UPF0149) HQ397_RS04400 PF01494 FAD binding domain HQ397_RS04405 PF01494 FAD binding domain HQ397_RS04410 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ397_RS04410 PF01571 Aminomethyltransferase folate-binding domain HQ397_RS04415 PF01597 Glycine cleavage H-protein HQ397_RS04420 PF02347 Glycine cleavage system P-protein HQ397_RS04425 PF01022 Bacterial regulatory protein, arsR family HQ397_RS04430 PF01758 Sodium Bile acid symporter family HQ397_RS04435 PF03960 ArsC family HQ397_RS04440 PF08241 Methyltransferase domain HQ397_RS04450 PF07690 Major Facilitator Superfamily HQ397_RS04455 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS04455 PF13192 Thioredoxin domain HQ397_RS04460 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ397_RS04460 PF00578 AhpC/TSA family HQ397_RS04465 PF00571 CBS domain HQ397_RS04470 PF02547 Queuosine biosynthesis protein HQ397_RS04475 PF01702 Queuine tRNA-ribosyltransferase HQ397_RS04480 PF02699 Preprotein translocase subunit HQ397_RS04490 PF07549 SecD/SecF GG Motif HQ397_RS04490 PF02355 Protein export membrane protein HQ397_RS04500 PF13181 Tetratricopeptide repeat HQ397_RS04500 PF07719 Tetratricopeptide repeat HQ397_RS04510 PF01136 Peptidase family U32 HQ397_RS04515 PF02036 SCP-2 sterol transfer family HQ397_RS04525 PF00588 SpoU rRNA Methylase family HQ397_RS04530 PF02082 Transcriptional regulator HQ397_RS04535 PF00266 Aminotransferase class-V HQ397_RS04540 PF01592 NifU-like N terminal domain HQ397_RS04545 PF01521 Iron-sulphur cluster biosynthesis HQ397_RS04550 PF07743 HSCB C-terminal oligomerisation domain HQ397_RS04555 PF00012 Hsp70 protein HQ397_RS04560 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_RS04565 PF12404 Peptidase HQ397_RS04565 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_RS04570 PF12404 Peptidase HQ397_RS04570 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_RS04575 PF00334 Nucleoside diphosphate kinase HQ397_RS04580 PF04055 Radical SAM superfamily HQ397_RS04590 PF13464 Domain of unknown function (DUF4115) HQ397_RS04595 PF04551 GcpE protein HQ397_RS04600 PF03129 Anticodon binding domain HQ397_RS04600 PF13393 Histidyl-tRNA synthetase HQ397_RS04605 PF09976 Tetratricopeptide repeat-like domain HQ397_RS04615 PF01926 50S ribosome-binding GTPase HQ397_RS04615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ397_RS04620 PF07191 zinc-ribbons HQ397_RS04625 PF01464 Transglycosylase SLT domain HQ397_RS04625 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS04630 PF02769 AIR synthase related protein, C-terminal domain HQ397_RS04630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ397_RS04630 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ397_RS04635 PF01966 HD domain HQ397_RS04640 PF00072 Response regulator receiver domain HQ397_RS04655 PF00361 Proton-conducting membrane transporter HQ397_RS04660 PF00361 Proton-conducting membrane transporter HQ397_RS04665 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HQ397_RS04665 PF00361 Proton-conducting membrane transporter HQ397_RS04670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ397_RS04675 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ397_RS04680 PF12838 4Fe-4S dicluster domain HQ397_RS04685 PF00146 NADH dehydrogenase HQ397_RS04690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_RS04690 PF00384 Molybdopterin oxidoreductase HQ397_RS04690 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ397_RS04695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ397_RS04695 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ397_RS04705 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ397_RS04705 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ397_RS04710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ397_RS04715 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ397_RS04720 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_RS04720 PF00691 OmpA family HQ397_RS04725 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS04745 PF04536 TPM domain HQ397_RS04755 PF03411 Penicillin-insensitive murein endopeptidase HQ397_RS04765 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ397_RS04770 PF00248 Aldo/keto reductase family HQ397_RS04785 PF01212 Beta-eliminating lyase HQ397_RS04795 PF00072 Response regulator receiver domain HQ397_RS04800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS04800 PF03466 LysR substrate binding domain HQ397_RS04815 PF13188 PAS domain HQ397_RS04815 PF00563 EAL domain HQ397_RS04815 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS04815 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS04820 PF00881 Nitroreductase family HQ397_RS04835 PF07690 Major Facilitator Superfamily HQ397_RS04840 PF03466 LysR substrate binding domain HQ397_RS04840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS04845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS04845 PF03466 LysR substrate binding domain HQ397_RS04850 PF00925 GTP cyclohydrolase II HQ397_RS04855 PF02224 Cytidylate kinase HQ397_RS04860 PF00575 S1 RNA binding domain HQ397_RS04865 PF00216 Bacterial DNA-binding protein HQ397_RS04875 PF18073 Rubredoxin metal binding domain HQ397_RS04880 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ397_RS04895 PF06508 Queuosine biosynthesis protein QueC HQ397_RS04900 PF04055 Radical SAM superfamily HQ397_RS04905 PF12843 Putative quorum-sensing-regulated virulence factor HQ397_RS04910 PF01923 Cobalamin adenosyltransferase HQ397_RS04915 PF00816 H-NS histone family HQ397_RS04920 PF03553 Na+/H+ antiporter family HQ397_RS04925 PF00265 Thymidine kinase HQ397_RS04935 PF10722 Putative bacterial sensory transduction regulator HQ397_RS04945 PF05638 Type VI secretion system effector, Hcp HQ397_RS04950 PF04717 Type VI secretion system, phage-baseplate injector HQ397_RS04960 PF03527 RHS protein HQ397_RS04960 PF05593 RHS Repeat HQ397_RS04980 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath HQ397_RS04990 PF05947 Type VI secretion system, TssF HQ397_RS05010 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE HQ397_RS05020 PF17871 AAA lid domain HQ397_RS05020 PF07724 AAA domain (Cdc48 subfamily) HQ397_RS05020 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_RS05020 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_RS05025 PF02954 Bacterial regulatory protein, Fis family HQ397_RS05025 PF00158 Sigma-54 interaction domain HQ397_RS05040 PF14331 ImcF-related N-terminal domain HQ397_RS05040 PF06744 Type VI secretion protein IcmF C-terminal HQ397_RS05040 PF06761 Intracellular multiplication and human macrophage-killing HQ397_RS05055 PF04717 Type VI secretion system, phage-baseplate injector HQ397_RS05085 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HQ397_RS05085 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HQ397_RS05095 PF00313 'Cold-shock' DNA-binding domain HQ397_RS05100 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ397_RS05110 PF01176 Translation initiation factor 1A / IF-1 HQ397_RS05115 PF04377 Arginine-tRNA-protein transferase, C terminus HQ397_RS05115 PF04376 Arginine-tRNA-protein transferase, N terminus HQ397_RS05120 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ397_RS05125 PF05433 Glycine zipper 2TM domain HQ397_RS05135 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS05140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ397_RS05140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ397_RS05145 PF01037 Lrp/AsnC ligand binding domain HQ397_RS05150 PF01580 FtsK/SpoIIIE family HQ397_RS05150 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ397_RS05150 PF17854 FtsK alpha domain HQ397_RS05150 PF09397 Ftsk gamma domain HQ397_RS05155 PF03548 Outer membrane lipoprotein carrier protein LolA HQ397_RS05160 PF16193 AAA C-terminal domain HQ397_RS05160 PF12002 MgsA AAA+ ATPase C terminal HQ397_RS05160 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_RS05165 PF02403 Seryl-tRNA synthetase N-terminal domain HQ397_RS05165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ397_RS05170 PF02674 Colicin V production protein HQ397_RS05175 PF00156 Phosphoribosyl transferase domain HQ397_RS05180 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ397_RS05185 PF00005 ABC transporter HQ397_RS05190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS05190 PF00005 ABC transporter HQ397_RS05200 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS05205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS05210 PF02954 Bacterial regulatory protein, Fis family HQ397_RS05210 PF00158 Sigma-54 interaction domain HQ397_RS05215 PF04012 PspA/IM30 family HQ397_RS05220 PF06667 Phage shock protein B HQ397_RS05230 PF04317 YcjX-like family, DUF463 HQ397_RS05235 PF05128 Domain of unknown function (DUF697) HQ397_RS05245 PF01329 Pterin 4 alpha carbinolamine dehydratase HQ397_RS05255 PF18024 Helix-turn-helix domain HQ397_RS05255 PF00158 Sigma-54 interaction domain HQ397_RS05260 PF13689 YfiR/HmsC-like HQ397_RS05265 PF17152 Periplasmic sensor domain HQ397_RS05265 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS05270 PF00691 OmpA family HQ397_RS05275 PF03741 Integral membrane protein TerC family HQ397_RS05285 PF08891 YfcL protein HQ397_RS05290 PF00501 AMP-binding enzyme HQ397_RS05295 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ397_RS05295 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ397_RS05300 PF04172 LrgB-like family HQ397_RS05305 PF03788 LrgA family HQ397_RS05320 PF08411 Exonuclease C-terminal HQ397_RS05320 PF00929 Exonuclease HQ397_RS05325 PF11762 L-arabinose isomerase C-terminal domain HQ397_RS05325 PF02610 L-arabinose isomerase HQ397_RS05330 PF00596 Class II Aldolase and Adducin N-terminal domain HQ397_RS05335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ397_RS05340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_RS05345 PF00005 ABC transporter HQ397_RS05350 PF02653 Branched-chain amino acid transport system / permease component HQ397_RS05355 PF12833 Helix-turn-helix domain HQ397_RS05355 PF02311 AraC-like ligand binding domain HQ397_RS05360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS05360 PF03466 LysR substrate binding domain HQ397_RS05365 PF02678 Pirin HQ397_RS05365 PF05726 Pirin C-terminal cupin domain HQ397_RS05370 PF00444 Ribosomal protein L36 HQ397_RS05375 PF01197 Ribosomal protein L31 HQ397_RS05390 PF01863 Protein of unknown function DUF45 HQ397_RS05415 PF01266 FAD dependent oxidoreductase HQ397_RS05415 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ397_RS05420 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_RS05420 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_RS05435 PF00285 Citrate synthase, C-terminal domain HQ397_RS05440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ397_RS05445 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ397_RS05450 PF02910 Fumarate reductase flavoprotein C-term HQ397_RS05450 PF00890 FAD binding domain HQ397_RS05460 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ397_RS05460 PF02779 Transketolase, pyrimidine binding domain HQ397_RS05460 PF00676 Dehydrogenase E1 component HQ397_RS05460 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ397_RS05465 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ397_RS05465 PF00364 Biotin-requiring enzyme HQ397_RS05465 PF02817 e3 binding domain HQ397_RS05470 PF08442 ATP-grasp domain HQ397_RS05470 PF00549 CoA-ligase HQ397_RS05475 PF02629 CoA binding domain HQ397_RS05475 PF00549 CoA-ligase HQ397_RS05485 PF03692 Putative zinc- or iron-chelating domain HQ397_RS05490 PF01266 FAD dependent oxidoreductase HQ397_RS05495 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS05500 PF00005 ABC transporter HQ397_RS05510 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS05510 PF07702 UTRA domain HQ397_RS05515 PF00266 Aminotransferase class-V HQ397_RS05520 PF00202 Aminotransferase class-III HQ397_RS05530 PF02901 Pyruvate formate lyase-like HQ397_RS05530 PF01228 Glycine radical HQ397_RS05535 PF01226 Formate/nitrite transporter HQ397_RS05540 PF18381 YcaO cyclodehydratase C-terminal domain HQ397_RS05540 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ397_RS05545 PF00893 Small Multidrug Resistance protein HQ397_RS05550 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ397_RS05550 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ397_RS05555 PF00675 Insulinase (Peptidase family M16) HQ397_RS05555 PF05193 Peptidase M16 inactive domain HQ397_RS05560 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ397_RS05570 PF13460 NAD(P)H-binding HQ397_RS05575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS05575 PF03466 LysR substrate binding domain HQ397_RS05580 PF00106 short chain dehydrogenase HQ397_RS05585 PF12833 Helix-turn-helix domain HQ397_RS05590 PF00593 TonB dependent receptor HQ397_RS05590 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS05600 PF03466 LysR substrate binding domain HQ397_RS05600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS05605 PF08267 Cobalamin-independent synthase, N-terminal domain HQ397_RS05605 PF01717 Cobalamin-independent synthase, Catalytic domain HQ397_RS05615 PF00571 CBS domain HQ397_RS05615 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_RS05620 PF07969 Amidohydrolase family HQ397_RS05630 PF01266 FAD dependent oxidoreductase HQ397_RS05635 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HQ397_RS05645 PF01212 Beta-eliminating lyase HQ397_RS05650 PF00768 D-alanyl-D-alanine carboxypeptidase HQ397_RS05655 PF00293 NUDIX domain HQ397_RS05660 PF03918 Cytochrome C biogenesis protein HQ397_RS05665 PF08534 Redoxin HQ397_RS05670 PF01578 Cytochrome C assembly protein HQ397_RS05670 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ397_RS05675 PF03916 Polysulphide reductase, NrfD HQ397_RS05680 PF13247 4Fe-4S dicluster domain HQ397_RS05680 PF00037 4Fe-4S binding domain HQ397_RS05685 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ397_RS05685 PF13435 Cytochrome c554 and c-prime HQ397_RS05690 PF02335 Cytochrome c552 HQ397_RS05695 PF13183 4Fe-4S dicluster domain HQ397_RS05695 PF02754 Cysteine-rich domain HQ397_RS05700 PF00890 FAD binding domain HQ397_RS05705 PF01266 FAD dependent oxidoreductase HQ397_RS05705 PF04324 BFD-like [2Fe-2S] binding domain HQ397_RS05710 PF02810 SEC-C motif HQ397_RS05715 PF00672 HAMP domain HQ397_RS05715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS05715 PF17200 Single Cache domain 2 HQ397_RS05720 PF00480 ROK family HQ397_RS05720 PF01047 MarR family HQ397_RS05725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS05725 PF00989 PAS fold HQ397_RS05725 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ397_RS05725 PF17203 Single cache domain 3 HQ397_RS05730 PF00072 Response regulator receiver domain HQ397_RS05730 PF08279 HTH domain HQ397_RS05730 PF12431 Transcriptional regulator HQ397_RS05735 PF01970 Tripartite tricarboxylate transporter TctA family HQ397_RS05750 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS05750 PF01464 Transglycosylase SLT domain HQ397_RS05755 PF06826 Predicted Permease Membrane Region HQ397_RS05755 PF02080 TrkA-C domain HQ397_RS05765 PF12344 Ultra-violet resistance protein B HQ397_RS05765 PF04851 Type III restriction enzyme, res subunit HQ397_RS05765 PF02151 UvrB/uvrC motif HQ397_RS05765 PF00271 Helicase conserved C-terminal domain HQ397_RS05765 PF17757 UvrB interaction domain HQ397_RS05775 PF09335 SNARE associated Golgi protein HQ397_RS05780 PF02600 Disulfide bond formation protein DsbB HQ397_RS05785 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ397_RS05790 PF07840 FadR C-terminal domain HQ397_RS05790 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS05795 PF04293 SpoVR like protein HQ397_RS05800 PF04285 Protein of unknown function (DUF444) HQ397_RS05805 PF08298 PrkA AAA domain HQ397_RS05805 PF06798 PrkA serine protein kinase C-terminal domain HQ397_RS05810 PF16124 RecQ zinc-binding HQ397_RS05810 PF00270 DEAD/DEAH box helicase HQ397_RS05810 PF00271 Helicase conserved C-terminal domain HQ397_RS05810 PF00570 HRDC domain HQ397_RS05810 PF09382 RQC domain HQ397_RS05815 PF00375 Sodium:dicarboxylate symporter family HQ397_RS05820 PF03222 Tryptophan/tyrosine permease family HQ397_RS05825 PF00293 NUDIX domain HQ397_RS05830 PF00425 chorismate binding enzyme HQ397_RS05830 PF04715 Anthranilate synthase component I, N terminal region HQ397_RS05850 PF00343 Carbohydrate phosphorylase HQ397_RS05855 PF00939 Sodium:sulfate symporter transmembrane region HQ397_RS05860 PF00085 Thioredoxin HQ397_RS05870 PF00005 ABC transporter HQ397_RS05870 PF00664 ABC transporter transmembrane region HQ397_RS05875 PF00664 ABC transporter transmembrane region HQ397_RS05875 PF00005 ABC transporter HQ397_RS05895 PF01575 MaoC like domain HQ397_RS05920 PF08543 Phosphomethylpyrimidine kinase HQ397_RS05925 PF03992 Antibiotic biosynthesis monooxygenase HQ397_RS05930 PF00465 Iron-containing alcohol dehydrogenase HQ397_RS05935 PF00583 Acetyltransferase (GNAT) family HQ397_RS05945 PF01928 CYTH domain HQ397_RS05955 PF02694 Uncharacterised BCR, YnfA/UPF0060 family HQ397_RS05965 PF13673 Acetyltransferase (GNAT) domain HQ397_RS05970 PF00270 DEAD/DEAH box helicase HQ397_RS05970 PF00271 Helicase conserved C-terminal domain HQ397_RS05975 PF00255 Glutathione peroxidase HQ397_RS06015 PF07478 D-ala D-ala ligase C-terminus HQ397_RS06015 PF01820 D-ala D-ala ligase N-terminus HQ397_RS06020 PF18029 Glyoxalase-like domain HQ397_RS06020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_RS06025 PF03942 DTW domain HQ397_RS06030 PF01925 Sulfite exporter TauE/SafE HQ397_RS06035 PF03466 LysR substrate binding domain HQ397_RS06035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS06045 PF14525 AraC-binding-like domain HQ397_RS06045 PF12833 Helix-turn-helix domain HQ397_RS06050 PF11398 Protein of unknown function (DUF2813) HQ397_RS06105 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_RS06105 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ397_RS06110 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS06115 PF01546 Peptidase family M20/M25/M40 HQ397_RS06115 PF07687 Peptidase dimerisation domain HQ397_RS06120 PF00365 Phosphofructokinase HQ397_RS06125 PF00121 Triosephosphate isomerase HQ397_RS06130 PF02698 DUF218 domain HQ397_RS06135 PF13847 Methyltransferase domain HQ397_RS06140 PF03882 MukF winged-helix domain HQ397_RS06140 PF17193 MukF C-terminal domain HQ397_RS06140 PF17192 MukF middle domain HQ397_RS06145 PF04288 MukE-like family HQ397_RS06150 PF16330 MukB hinge domain HQ397_RS06150 PF04310 MukB N-terminal HQ397_RS06155 PF03330 Lytic transglycolase HQ397_RS06170 PF01327 Polypeptide deformylase HQ397_RS06200 PF02567 Phenazine biosynthesis-like protein HQ397_RS06215 PF08274 PhnA Zinc-Ribbon HQ397_RS06215 PF03831 PhnA domain HQ397_RS06225 PF08329 Chitinase A, N-terminal domain HQ397_RS06225 PF00704 Glycosyl hydrolases family 18 HQ397_RS06245 PF00300 Histidine phosphatase superfamily (branch 1) HQ397_RS06245 PF13456 Reverse transcriptase-like HQ397_RS06250 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS06250 PF08448 PAS fold HQ397_RS06260 PF01713 Smr domain HQ397_RS06265 PF05175 Methyltransferase small domain HQ397_RS06270 PF01264 Chorismate synthase HQ397_RS06280 PF00270 DEAD/DEAH box helicase HQ397_RS06280 PF00271 Helicase conserved C-terminal domain HQ397_RS06300 PF03222 Tryptophan/tyrosine permease family HQ397_RS06305 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS06305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_RS06310 PF00381 PTS HPr component phosphorylation site HQ397_RS06310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_RS06315 PF00294 pfkB family carbohydrate kinase HQ397_RS06320 PF02378 Phosphotransferase system, EIIC HQ397_RS06320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_RS06325 PF06560 Glucose-6-phosphate isomerase (GPI) HQ397_RS06330 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS06330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_RS06350 PF03610 PTS system fructose IIA component HQ397_RS06350 PF03830 PTS system sorbose subfamily IIB component HQ397_RS06355 PF03609 PTS system sorbose-specific iic component HQ397_RS06360 PF03613 PTS system mannose/fructose/sorbose family IID component HQ397_RS06370 PF06945 Protein of unknown function (DUF1289) HQ397_RS06375 PF03562 MltA specific insert domain HQ397_RS06375 PF06725 3D domain HQ397_RS06380 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_RS06385 PF00268 Ribonucleotide reductase, small chain HQ397_RS06390 PF03477 ATP cone domain HQ397_RS06390 PF02867 Ribonucleotide reductase, barrel domain HQ397_RS06390 PF00317 Ribonucleotide reductase, all-alpha domain HQ397_RS06395 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS06405 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ397_RS06405 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ397_RS06415 PF04055 Radical SAM superfamily HQ397_RS06425 PF03129 Anticodon binding domain HQ397_RS06425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ397_RS06425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ397_RS06425 PF02824 TGS domain HQ397_RS06430 PF00707 Translation initiation factor IF-3, C-terminal domain HQ397_RS06430 PF05198 Translation initiation factor IF-3, N-terminal domain HQ397_RS06435 PF01632 Ribosomal protein L35 HQ397_RS06440 PF00453 Ribosomal protein L20 HQ397_RS06445 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ397_RS06445 PF01409 tRNA synthetases class II core domain (F) HQ397_RS06450 PF03483 B3/4 domain HQ397_RS06450 PF03484 tRNA synthetase B5 domain HQ397_RS06450 PF01588 Putative tRNA binding domain HQ397_RS06450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HQ397_RS06450 PF03147 Ferredoxin-fold anticodon binding domain HQ397_RS06455 PF00216 Bacterial DNA-binding protein HQ397_RS06460 PF00072 Response regulator receiver domain HQ397_RS06460 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ397_RS06460 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS06460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS06475 PF02146 Sir2 family HQ397_RS06490 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS06495 PF00294 pfkB family carbohydrate kinase HQ397_RS06500 PF13407 Periplasmic binding protein domain HQ397_RS06505 PF02653 Branched-chain amino acid transport system / permease component HQ397_RS06510 PF00005 ABC transporter HQ397_RS06515 PF05025 RbsD / FucU transport protein family HQ397_RS06520 PF13417 Glutathione S-transferase, N-terminal domain HQ397_RS06535 PF01171 PP-loop family HQ397_RS06540 PF00582 Universal stress protein family HQ397_RS06545 PF13545 Crp-like helix-turn-helix domain HQ397_RS06545 PF00027 Cyclic nucleotide-binding domain HQ397_RS06560 PF00403 Heavy-metal-associated domain HQ397_RS06570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ397_RS06570 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ397_RS06585 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ397_RS06595 PF13185 GAF domain HQ397_RS06600 PF04352 ProQ/FINO family HQ397_RS06600 PF17516 ProQ C-terminal domain HQ397_RS06605 PF17804 Tail specific protease N-terminal domain HQ397_RS06605 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ397_RS06605 PF00595 PDZ domain HQ397_RS06605 PF03572 Peptidase family S41 HQ397_RS06610 PF01433 Peptidase family M1 domain HQ397_RS06610 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ397_RS06610 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ397_RS06620 PF05088 Bacterial NAD-glutamate dehydrogenase HQ397_RS06625 PF01180 Dihydroorotate dehydrogenase HQ397_RS06630 PF07126 Cell-division protein ZapC HQ397_RS06635 PF10672 S-adenosylmethionine-dependent methyltransferase HQ397_RS06635 PF02926 THUMP domain HQ397_RS06635 PF01170 Putative RNA methylase family UPF0020 HQ397_RS06645 PF00005 ABC transporter HQ397_RS06645 PF16326 ABC transporter C-terminal domain HQ397_RS06645 PF12848 ABC transporter HQ397_RS06655 PF04957 Ribosome modulation factor HQ397_RS06660 PF07977 FabA-like domain HQ397_RS06665 PF13654 AAA domain HQ397_RS06665 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ397_RS06700 PF10734 Protein of unknown function (DUF2523) HQ397_RS06705 PF05707 Zonular occludens toxin (Zot) HQ397_RS06730 PF07130 YebG protein HQ397_RS06765 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ397_RS06765 PF06974 Protein of unknown function (DUF1298) HQ397_RS06780 PF03972 MmgE/PrpD family HQ397_RS06785 PF00285 Citrate synthase, C-terminal domain HQ397_RS06800 PF04403 Paraquat-inducible protein A HQ397_RS06810 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HQ397_RS06810 PF01189 16S rRNA methyltransferase RsmB/F HQ397_RS06810 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HQ397_RS06820 PF00589 Phage integrase family HQ397_RS06825 PF01026 TatD related DNase HQ397_RS06830 PF09115 DNA polymerase III, delta subunit, C terminal HQ397_RS06835 PF02223 Thymidylate kinase HQ397_RS06840 PF02618 YceG-like family HQ397_RS06845 PF01063 Amino-transferase class IV HQ397_RS06850 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_RS06850 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_RS06855 PF00550 Phosphopantetheine attachment site HQ397_RS06865 PF00698 Acyl transferase domain HQ397_RS06870 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ397_RS06870 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ397_RS06875 PF02504 Fatty acid synthesis protein HQ397_RS06880 PF01783 Ribosomal L32p protein family HQ397_RS06885 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ397_RS06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS06895 PF03466 LysR substrate binding domain HQ397_RS06900 PF07690 Major Facilitator Superfamily HQ397_RS06905 PF02545 Maf-like protein HQ397_RS06910 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS06915 PF01479 S4 domain HQ397_RS06915 PF00849 RNA pseudouridylate synthase HQ397_RS06920 PF00575 S1 RNA binding domain HQ397_RS06920 PF12111 Polyribonucleotide phosphorylase C terminal HQ397_RS06920 PF10150 Ribonuclease E/G family HQ397_RS06925 PF01384 Phosphate transporter family HQ397_RS06930 PF00692 dUTPase HQ397_RS06935 PF00485 Phosphoribulokinase / Uridine kinase family HQ397_RS06940 PF10609 NUBPL iron-transfer P-loop NTPase HQ397_RS06945 PF01588 Putative tRNA binding domain HQ397_RS06945 PF09334 tRNA synthetases class I (M) HQ397_RS06945 PF08264 Anticodon-binding domain of tRNA HQ397_RS06950 PF02798 Glutathione S-transferase, N-terminal domain HQ397_RS06950 PF00043 Glutathione S-transferase, C-terminal domain HQ397_RS06955 PF00708 Acylphosphatase HQ397_RS06960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS06960 PF00672 HAMP domain HQ397_RS06965 PF10672 S-adenosylmethionine-dependent methyltransferase HQ397_RS06965 PF17785 PUA-like domain HQ397_RS06980 PF02769 AIR synthase related protein, C-terminal domain HQ397_RS06980 PF00586 AIR synthase related protein, N-terminal domain HQ397_RS06990 PF00753 Metallo-beta-lactamase superfamily HQ397_RS06995 PF00072 Response regulator receiver domain HQ397_RS07000 PF01627 Hpt domain HQ397_RS07000 PF00072 Response regulator receiver domain HQ397_RS07000 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS07000 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ397_RS07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS07000 PF00672 HAMP domain HQ397_RS07005 PF01386 Ribosomal L25p family HQ397_RS07015 PF00270 DEAD/DEAH box helicase HQ397_RS07015 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HQ397_RS07015 PF00271 Helicase conserved C-terminal domain HQ397_RS07015 PF04408 Helicase associated domain (HA2) HQ397_RS07015 PF11898 Domain of unknown function (DUF3418) HQ397_RS07020 PF01743 Poly A polymerase head domain HQ397_RS07020 PF01368 DHH family HQ397_RS07020 PF02272 DHHA1 domain HQ397_RS07020 PF00571 CBS domain HQ397_RS07025 PF00072 Response regulator receiver domain HQ397_RS07025 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS07035 PF02575 YbaB/EbfC DNA-binding family HQ397_RS07040 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ397_RS07040 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ397_RS07040 PF12169 DNA polymerase III subunits gamma and tau domain III HQ397_RS07045 PF00156 Phosphoribosyl transferase domain HQ397_RS07050 PF04304 Protein of unknown function (DUF454) HQ397_RS07055 PF01207 Dihydrouridine synthase (Dus) HQ397_RS07070 PF01612 3'-5' exonuclease HQ397_RS07070 PF00570 HRDC domain HQ397_RS07075 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS07075 PF00501 AMP-binding enzyme HQ397_RS07080 PF08241 Methyltransferase domain HQ397_RS07080 PF12697 Alpha/beta hydrolase family HQ397_RS07090 PF00814 Glycoprotease family HQ397_RS07105 PF01634 ATP phosphoribosyltransferase HQ397_RS07105 PF08029 HisG, C-terminal domain HQ397_RS07110 PF00815 Histidinol dehydrogenase HQ397_RS07115 PF00155 Aminotransferase class I and II HQ397_RS07120 PF00475 Imidazoleglycerol-phosphate dehydratase HQ397_RS07120 PF08645 Polynucleotide kinase 3 phosphatase HQ397_RS07125 PF00117 Glutamine amidotransferase class-I HQ397_RS07130 PF00977 Histidine biosynthesis protein HQ397_RS07135 PF00072 Response regulator receiver domain HQ397_RS07140 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS07140 PF08448 PAS fold HQ397_RS07145 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS07145 PF01627 Hpt domain HQ397_RS07145 PF00072 Response regulator receiver domain HQ397_RS07145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS07150 PF00977 Histidine biosynthesis protein HQ397_RS07155 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ397_RS07155 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ397_RS07165 PF00501 AMP-binding enzyme HQ397_RS07165 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS07170 PF03606 C4-dicarboxylate anaerobic carrier HQ397_RS07190 PF01799 [2Fe-2S] binding domain HQ397_RS07190 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ397_RS07195 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ397_RS07195 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ397_RS07200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ397_RS07200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ397_RS07205 PF00860 Permease family HQ397_RS07210 PF01979 Amidohydrolase family HQ397_RS07215 PF00860 Permease family HQ397_RS07220 PF01799 [2Fe-2S] binding domain HQ397_RS07220 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ397_RS07220 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ397_RS07225 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ397_RS07230 PF01979 Amidohydrolase family HQ397_RS07235 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ397_RS07235 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS07255 PF13478 XdhC Rossmann domain HQ397_RS07255 PF02625 XdhC and CoxI family HQ397_RS07260 PF00892 EamA-like transporter family HQ397_RS07270 PF01979 Amidohydrolase family HQ397_RS07275 PF01546 Peptidase family M20/M25/M40 HQ397_RS07275 PF07687 Peptidase dimerisation domain HQ397_RS07280 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS07290 PF00158 Sigma-54 interaction domain HQ397_RS07290 PF02954 Bacterial regulatory protein, Fis family HQ397_RS07290 PF13188 PAS domain HQ397_RS07315 PF06074 Protein of unknown function (DUF935) HQ397_RS07325 PF07152 YaeQ protein HQ397_RS07335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ397_RS07335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ397_RS07335 PF00378 Enoyl-CoA hydratase/isomerase HQ397_RS07340 PF02803 Thiolase, C-terminal domain HQ397_RS07340 PF00108 Thiolase, N-terminal domain HQ397_RS07345 PF17863 AAA lid domain HQ397_RS07345 PF07726 ATPase family associated with various cellular activities (AAA) HQ397_RS07385 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ397_RS07390 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ397_RS07395 PF00563 EAL domain HQ397_RS07395 PF08668 HDOD domain HQ397_RS07400 PF00108 Thiolase, N-terminal domain HQ397_RS07400 PF02803 Thiolase, C-terminal domain HQ397_RS07405 PF09278 MerR, DNA binding HQ397_RS07405 PF00376 MerR family regulatory protein HQ397_RS07415 PF06865 Pyrimidine/purine nucleoside phosphorylase HQ397_RS07420 PF03313 Serine dehydratase alpha chain HQ397_RS07420 PF03315 Serine dehydratase beta chain HQ397_RS07425 PF03313 Serine dehydratase alpha chain HQ397_RS07425 PF03315 Serine dehydratase beta chain HQ397_RS07430 PF13406 Transglycosylase SLT domain HQ397_RS07435 PF05166 YcgL domain HQ397_RS07440 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ397_RS07440 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ397_RS07445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ397_RS07450 PF03776 Septum formation topological specificity factor MinE HQ397_RS07455 PF04269 Protein of unknown function, DUF440 HQ397_RS07460 PF00912 Transglycosylase HQ397_RS07465 PF04269 Protein of unknown function, DUF440 HQ397_RS07475 PF17783 CvfB-like winged helix domain HQ397_RS07475 PF13509 S1 domain HQ397_RS07500 PF02525 Flavodoxin-like fold HQ397_RS07505 PF00892 EamA-like transporter family HQ397_RS07510 PF02222 ATP-grasp domain HQ397_RS07510 PF01370 NAD dependent epimerase/dehydratase family HQ397_RS07515 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS07525 PF00677 Lumazine binding domain HQ397_RS07530 PF06786 Uncharacterised protein family (UPF0253) HQ397_RS07535 PF01554 MatE HQ397_RS07565 PF00136 DNA polymerase family B HQ397_RS07565 PF03104 DNA polymerase family B, exonuclease domain HQ397_RS07575 PF17151 Periplasmic sensor domain HQ397_RS07575 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS07590 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ397_RS07595 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ397_RS07605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS07605 PF03466 LysR substrate binding domain HQ397_RS07610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ397_RS07610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ397_RS07615 PF01261 Xylose isomerase-like TIM barrel HQ397_RS07620 PF03466 LysR substrate binding domain HQ397_RS07620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS07630 PF01966 HD domain HQ397_RS07640 PF13188 PAS domain HQ397_RS07640 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS07640 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS07640 PF00563 EAL domain HQ397_RS07645 PF00232 Glycosyl hydrolase family 1 HQ397_RS07650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS07650 PF03466 LysR substrate binding domain HQ397_RS07655 PF07694 5TMR of 5TMR-LYT HQ397_RS07655 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS07660 PF00248 Aldo/keto reductase family HQ397_RS07670 PF00248 Aldo/keto reductase family HQ397_RS07675 PF03466 LysR substrate binding domain HQ397_RS07675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS07685 PF01925 Sulfite exporter TauE/SafE HQ397_RS07690 PF13520 Amino acid permease HQ397_RS07700 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ397_RS07700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ397_RS07705 PF00378 Enoyl-CoA hydratase/isomerase HQ397_RS07715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_RS07715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_RS07715 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_RS07720 PF00171 Aldehyde dehydrogenase family HQ397_RS07725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_RS07725 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_RS07725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_RS07735 PF00378 Enoyl-CoA hydratase/isomerase HQ397_RS07740 PF02785 Biotin carboxylase C-terminal domain HQ397_RS07740 PF00289 Biotin carboxylase, N-terminal domain HQ397_RS07740 PF00364 Biotin-requiring enzyme HQ397_RS07740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ397_RS07745 PF00682 HMGL-like HQ397_RS07750 PF09278 MerR, DNA binding HQ397_RS07750 PF00376 MerR family regulatory protein HQ397_RS07765 PF01184 GPR1/FUN34/yaaH family HQ397_RS07770 PF06167 Glucose-regulated metallo-peptidase M90 HQ397_RS07780 PF01235 Sodium:alanine symporter family HQ397_RS07785 PF00378 Enoyl-CoA hydratase/isomerase HQ397_RS07800 PF04341 Protein of unknown function, DUF485 HQ397_RS07805 PF00474 Sodium:solute symporter family HQ397_RS07810 PF12848 ABC transporter HQ397_RS07810 PF00005 ABC transporter HQ397_RS07815 PF13145 PPIC-type PPIASE domain HQ397_RS07820 PF00216 Bacterial DNA-binding protein HQ397_RS07825 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_RS07825 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ397_RS07825 PF02190 ATP-dependent protease La (LON) substrate-binding domain HQ397_RS07830 PF07724 AAA domain (Cdc48 subfamily) HQ397_RS07830 PF06689 ClpX C4-type zinc finger HQ397_RS07830 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_RS07835 PF00574 Clp protease HQ397_RS07840 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ397_RS07840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_RS07840 PF05697 Bacterial trigger factor protein (TF) HQ397_RS07855 PF02687 FtsX-like permease family HQ397_RS07855 PF12704 MacB-like periplasmic core domain HQ397_RS07860 PF00005 ABC transporter HQ397_RS07865 PF12704 MacB-like periplasmic core domain HQ397_RS07865 PF02687 FtsX-like permease family HQ397_RS07875 PF00270 DEAD/DEAH box helicase HQ397_RS07875 PF02559 CarD-like/TRCF domain HQ397_RS07875 PF03461 TRCF domain HQ397_RS07875 PF17757 UvrB interaction domain HQ397_RS07875 PF00271 Helicase conserved C-terminal domain HQ397_RS07880 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ397_RS07885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS07890 PF00892 EamA-like transporter family HQ397_RS07900 PF00300 Histidine phosphatase superfamily (branch 1) HQ397_RS07905 PF00675 Insulinase (Peptidase family M16) HQ397_RS07905 PF05193 Peptidase M16 inactive domain HQ397_RS07910 PF05724 Thiopurine S-methyltransferase (TPMT) HQ397_RS07925 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ397_RS07925 PF12833 Helix-turn-helix domain HQ397_RS07925 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ397_RS07925 PF02805 Metal binding domain of Ada HQ397_RS07950 PF00117 Glutamine amidotransferase class-I HQ397_RS07950 PF00958 GMP synthase C terminal domain HQ397_RS07950 PF02540 NAD synthase HQ397_RS07955 PF00571 CBS domain HQ397_RS07955 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_RS07960 PF02705 K+ potassium transporter HQ397_RS07970 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS07975 PF02472 Biopolymer transport protein ExbD/TolR HQ397_RS07980 PF00892 EamA-like transporter family HQ397_RS07985 PF02601 Exonuclease VII, large subunit HQ397_RS07985 PF13742 OB-fold nucleic acid binding domain HQ397_RS07990 PF04055 Radical SAM superfamily HQ397_RS07995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS07995 PF00672 HAMP domain HQ397_RS08000 PF00793 DAHP synthetase I family HQ397_RS08005 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ397_RS08010 PF00266 Aminotransferase class-V HQ397_RS08015 PF01012 Electron transfer flavoprotein domain HQ397_RS08015 PF00766 Electron transfer flavoprotein FAD-binding domain HQ397_RS08020 PF01012 Electron transfer flavoprotein domain HQ397_RS08030 PF01544 CorA-like Mg2+ transporter protein HQ397_RS08035 PF11143 Protein of unknown function (DUF2919) HQ397_RS08050 PF00593 TonB dependent receptor HQ397_RS08050 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS08055 PF01032 FecCD transport family HQ397_RS08060 PF01032 FecCD transport family HQ397_RS08065 PF00005 ABC transporter HQ397_RS08070 PF17837 4'-phosphopantetheinyl transferase N-terminal domain HQ397_RS08070 PF01648 4'-phosphopantetheinyl transferase superfamily HQ397_RS08075 PF01497 Periplasmic binding protein HQ397_RS08080 PF00975 Thioesterase domain HQ397_RS08080 PF00668 Condensation domain HQ397_RS08080 PF00550 Phosphopantetheine attachment site HQ397_RS08080 PF00501 AMP-binding enzyme HQ397_RS08080 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS08100 PF00857 Isochorismatase family HQ397_RS08100 PF00550 Phosphopantetheine attachment site HQ397_RS08105 PF00501 AMP-binding enzyme HQ397_RS08105 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS08110 PF00425 chorismate binding enzyme HQ397_RS08115 PF07273 Protein of unknown function (DUF1439) HQ397_RS08125 PF00483 Nucleotidyl transferase HQ397_RS08130 PF00563 EAL domain HQ397_RS08130 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS08130 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS08145 PF00294 pfkB family carbohydrate kinase HQ397_RS08155 PF00762 Ferrochelatase HQ397_RS08160 PF05191 Adenylate kinase, active site lid HQ397_RS08165 PF00183 Hsp90 protein HQ397_RS08165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS08170 PF02132 RecR protein HQ397_RS08170 PF13662 Toprim domain HQ397_RS08175 PF02634 FdhD/NarQ family HQ397_RS08180 PF00158 Sigma-54 interaction domain HQ397_RS08180 PF02954 Bacterial regulatory protein, Fis family HQ397_RS08180 PF01590 GAF domain HQ397_RS08195 PF12800 4Fe-4S binding domain HQ397_RS08195 PF13247 4Fe-4S dicluster domain HQ397_RS08210 PF02705 K+ potassium transporter HQ397_RS08215 PF12798 4Fe-4S binding domain HQ397_RS08215 PF00037 4Fe-4S binding domain HQ397_RS08220 PF00361 Proton-conducting membrane transporter HQ397_RS08225 PF00146 NADH dehydrogenase HQ397_RS08230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ397_RS08230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ397_RS08230 PF00374 Nickel-dependent hydrogenase HQ397_RS08235 PF12838 4Fe-4S dicluster domain HQ397_RS08240 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ397_RS08245 PF07450 Formate hydrogenlyase maturation protein HycH HQ397_RS08265 PF09107 Elongation factor SelB, winged helix HQ397_RS08265 PF09106 Elongation factor SelB, winged helix HQ397_RS08265 PF00009 Elongation factor Tu GTP binding domain HQ397_RS08265 PF09105 Elongation factor SelB, winged helix HQ397_RS08265 PF03144 Elongation factor Tu domain 2 HQ397_RS08270 PF00708 Acylphosphatase HQ397_RS08270 PF17788 HypF Kae1-like domain HQ397_RS08270 PF01300 Telomere recombination HQ397_RS08270 PF07503 HypF finger HQ397_RS08275 PF01455 HupF/HypC family HQ397_RS08280 PF01924 Hydrogenase formation hypA family HQ397_RS08285 PF00586 AIR synthase related protein, N-terminal domain HQ397_RS08285 PF02769 AIR synthase related protein, C-terminal domain HQ397_RS08290 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HQ397_RS08300 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ397_RS08305 PF08402 TOBE domain HQ397_RS08305 PF00005 ABC transporter HQ397_RS08310 PF00005 ABC transporter HQ397_RS08310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS08315 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS08315 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_RS08320 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS08325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS08330 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HQ397_RS08335 PF01750 Hydrogenase maturation protease HQ397_RS08340 PF00374 Nickel-dependent hydrogenase HQ397_RS08345 PF03916 Polysulphide reductase, NrfD HQ397_RS08350 PF13247 4Fe-4S dicluster domain HQ397_RS08355 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HQ397_RS08355 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ397_RS08360 PF00072 Response regulator receiver domain HQ397_RS08360 PF00158 Sigma-54 interaction domain HQ397_RS08360 PF02954 Bacterial regulatory protein, Fis family HQ397_RS08375 PF01584 CheW-like domain HQ397_RS08375 PF02895 Signal transducing histidine kinase, homodimeric domain HQ397_RS08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS08375 PF07194 P2 response regulator binding domain HQ397_RS08375 PF01627 Hpt domain HQ397_RS08380 PF17202 Single cache domain 3 HQ397_RS08380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS08380 PF00672 HAMP domain HQ397_RS08385 PF01584 CheW-like domain HQ397_RS08390 PF03705 CheR methyltransferase, all-alpha domain HQ397_RS08390 PF01739 CheR methyltransferase, SAM binding domain HQ397_RS08395 PF00072 Response regulator receiver domain HQ397_RS08395 PF01339 CheB methylesterase HQ397_RS08400 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS08400 PF00563 EAL domain HQ397_RS08400 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS08405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS08405 PF00672 HAMP domain HQ397_RS08405 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS08410 PF01168 Alanine racemase, N-terminal domain HQ397_RS08410 PF00842 Alanine racemase, C-terminal domain HQ397_RS08430 PF00916 Sulfate permease family HQ397_RS08430 PF01740 STAS domain HQ397_RS08445 PF03350 Uncharacterized protein family, UPF0114 HQ397_RS08460 PF03239 Iron permease FTR1 family HQ397_RS08465 PF01593 Flavin containing amine oxidoreductase HQ397_RS08480 PF07690 Major Facilitator Superfamily HQ397_RS08490 PF00005 ABC transporter HQ397_RS08495 PF12704 MacB-like periplasmic core domain HQ397_RS08495 PF02687 FtsX-like permease family HQ397_RS08515 PF01565 FAD binding domain HQ397_RS08515 PF02913 FAD linked oxidases, C-terminal domain HQ397_RS08520 PF02589 LUD domain HQ397_RS08525 PF11870 Domain of unknown function (DUF3390) HQ397_RS08525 PF13183 4Fe-4S dicluster domain HQ397_RS08525 PF02589 LUD domain HQ397_RS08530 PF02754 Cysteine-rich domain HQ397_RS08540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS08540 PF03466 LysR substrate binding domain HQ397_RS08550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_RS08555 PF00561 alpha/beta hydrolase fold HQ397_RS08575 PF01625 Peptide methionine sulfoxide reductase HQ397_RS08580 PF00583 Acetyltransferase (GNAT) family HQ397_RS08580 PF00696 Amino acid kinase family HQ397_RS08585 PF01842 ACT domain HQ397_RS08585 PF00696 Amino acid kinase family HQ397_RS08595 PF00884 Sulfatase HQ397_RS08600 PF02016 LD-carboxypeptidase N-terminal domain HQ397_RS08600 PF17676 LD-carboxypeptidase C-terminal domain HQ397_RS08605 PF01734 Patatin-like phospholipase HQ397_RS08615 PF01906 Putative heavy-metal-binding HQ397_RS08635 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS08640 PF05728 Uncharacterised protein family (UPF0227) HQ397_RS08650 PF01432 Peptidase family M3 HQ397_RS08650 PF08439 Oligopeptidase F HQ397_RS08670 PF07549 SecD/SecF GG Motif HQ397_RS08670 PF02355 Protein export membrane protein HQ397_RS08675 PF02355 Protein export membrane protein HQ397_RS08675 PF07549 SecD/SecF GG Motif HQ397_RS08675 PF13721 SecD export protein N-terminal TM region HQ397_RS08710 PF01230 HIT domain HQ397_RS08715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS08715 PF00672 HAMP domain HQ397_RS08725 PF01979 Amidohydrolase family HQ397_RS08740 PF00375 Sodium:dicarboxylate symporter family HQ397_RS08745 PF04191 Phospholipid methyltransferase HQ397_RS08750 PF01168 Alanine racemase, N-terminal domain HQ397_RS08750 PF00842 Alanine racemase, C-terminal domain HQ397_RS08755 PF03741 Integral membrane protein TerC family HQ397_RS08760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS08760 PF00005 ABC transporter HQ397_RS08770 PF00005 ABC transporter HQ397_RS08770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS08775 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_RS08775 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS08780 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS08785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS08790 PF01914 MarC family integral membrane protein HQ397_RS08800 PF00171 Aldehyde dehydrogenase family HQ397_RS08800 PF00465 Iron-containing alcohol dehydrogenase HQ397_RS08805 PF01966 HD domain HQ397_RS08810 PF07694 5TMR of 5TMR-LYT HQ397_RS08810 PF06580 Histidine kinase HQ397_RS08815 PF04397 LytTr DNA-binding domain HQ397_RS08815 PF00072 Response regulator receiver domain HQ397_RS08820 PF02554 Carbon starvation protein CstA HQ397_RS08825 PF11742 Protein of unknown function (DUF3302) HQ397_RS08830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS08830 PF00529 HlyD membrane-fusion protein of T1SS HQ397_RS08835 PF04851 Type III restriction enzyme, res subunit HQ397_RS08835 PF00271 Helicase conserved C-terminal domain HQ397_RS08840 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HQ397_RS08845 PF00462 Glutaredoxin HQ397_RS08855 PF00155 Aminotransferase class I and II HQ397_RS08860 PF03606 C4-dicarboxylate anaerobic carrier HQ397_RS08865 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ397_RS08865 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ397_RS08865 PF07055 Enoyl reductase FAD binding domain HQ397_RS08885 PF00892 EamA-like transporter family HQ397_RS08890 PF02508 Rnf-Nqr subunit, membrane protein HQ397_RS08895 PF04060 Putative Fe-S cluster HQ397_RS08900 PF13375 RnfC Barrel sandwich hybrid domain HQ397_RS08900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ397_RS08900 PF10531 SLBB domain HQ397_RS08900 PF12838 4Fe-4S dicluster domain HQ397_RS08905 PF03116 NQR2, RnfD, RnfE family HQ397_RS08910 PF04205 FMN-binding domain HQ397_RS08915 PF02508 Rnf-Nqr subunit, membrane protein HQ397_RS08920 PF10576 Iron-sulfur binding domain of endonuclease III HQ397_RS08920 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ397_RS08920 PF00633 Helix-hairpin-helix motif HQ397_RS08925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_RS08930 PF18393 MotY N-terminal domain HQ397_RS08930 PF00691 OmpA family HQ397_RS08935 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS08935 PF00672 HAMP domain HQ397_RS08935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS08940 PF00929 Exonuclease HQ397_RS08945 PF13726 Na+-H+ antiporter family HQ397_RS08945 PF03553 Na+/H+ antiporter family HQ397_RS08950 PF00271 Helicase conserved C-terminal domain HQ397_RS08950 PF00270 DEAD/DEAH box helicase HQ397_RS08950 PF03880 DbpA RNA binding domain HQ397_RS08955 PF03061 Thioesterase superfamily HQ397_RS08975 PF03741 Integral membrane protein TerC family HQ397_RS08975 PF03471 Transporter associated domain HQ397_RS08980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_RS08985 PF00962 Adenosine/AMP deaminase HQ397_RS08990 PF13344 Haloacid dehalogenase-like hydrolase HQ397_RS08995 PF02254 TrkA-N domain HQ397_RS08995 PF00999 Sodium/hydrogen exchanger family HQ397_RS09005 PF00733 Asparagine synthase HQ397_RS09005 PF13537 Glutamine amidotransferase domain HQ397_RS09015 PF00043 Glutathione S-transferase, C-terminal domain HQ397_RS09015 PF13417 Glutathione S-transferase, N-terminal domain HQ397_RS09025 PF14497 Glutathione S-transferase, C-terminal domain HQ397_RS09025 PF02798 Glutathione S-transferase, N-terminal domain HQ397_RS09035 PF04209 homogentisate 1,2-dioxygenase HQ397_RS09055 PF00563 EAL domain HQ397_RS09055 PF13426 PAS domain HQ397_RS09055 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS09060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS09060 PF08447 PAS fold HQ397_RS09070 PF03706 Lysylphosphatidylglycerol synthase TM region HQ397_RS09070 PF09924 Uncharacterised conserved protein (DUF2156) HQ397_RS09085 PF00884 Sulfatase HQ397_RS09085 PF08019 Phosphoethanolamine transferase EptA/EptB HQ397_RS09100 PF02108 Flagellar assembly protein FliH HQ397_RS09110 PF01514 Secretory protein of YscJ/FliF family HQ397_RS09115 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ397_RS09120 PF09025 YopR, type III needle-polymerisation regulator HQ397_RS09125 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ397_RS09130 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ397_RS09140 PF16693 Inner membrane component of T3SS, periplasmic domain HQ397_RS09140 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ397_RS09145 PF00263 Bacterial type II and III secretion system protein HQ397_RS09145 PF03958 Bacterial type II/III secretion system short domain HQ397_RS09155 PF16806 Antiactivator protein ExsD HQ397_RS09160 PF12833 Helix-turn-helix domain HQ397_RS09175 PF05932 Tir chaperone protein (CesT) family HQ397_RS09180 PF05844 YopD protein HQ397_RS09190 PF04888 Secretion system effector C (SseC) like family HQ397_RS09195 PF07720 Tetratricopeptide repeat HQ397_RS09200 PF04792 V antigen (LcrV) protein HQ397_RS09210 PF09621 Type III secretion system regulator (LcrR) HQ397_RS09215 PF00771 FHIPEP family HQ397_RS09225 PF09474 Type III secretion system YscX (type_III_YscX) HQ397_RS09235 PF09059 TyeA HQ397_RS09240 PF07201 HrpJ-like domain HQ397_RS09245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_RS09245 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ397_RS09245 PF18269 T3SS EscN ATPase C-terminal domain HQ397_RS09255 PF02120 Flagellar hook-length control protein FliK HQ397_RS09260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_RS09265 PF00813 FliP family HQ397_RS09270 PF01313 Bacterial export proteins, family 3 HQ397_RS09275 PF01311 Bacterial export proteins, family 1 HQ397_RS09280 PF01312 FlhB HrpN YscU SpaS Family HQ397_RS09300 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ397_RS09305 PF12805 FUSC-like inner membrane protein yccS HQ397_RS09310 PF04358 DsrC like protein HQ397_RS09315 PF05036 Sporulation related domain HQ397_RS09320 PF02875 Mur ligase family, glutamate ligase domain HQ397_RS09320 PF08245 Mur ligase middle domain HQ397_RS09325 PF17848 Acetyl-coA carboxylase zinc finger domain HQ397_RS09325 PF01039 Carboxyl transferase domain HQ397_RS09340 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ397_RS09340 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ397_RS09345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_RS09345 PF11890 Domain of unknown function (DUF3410) HQ397_RS09345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_RS09350 PF01569 PAP2 superfamily HQ397_RS09355 PF03180 NLPA lipoprotein HQ397_RS09375 PF01483 Proprotein convertase P-domain HQ397_RS09375 PF00082 Subtilase family HQ397_RS09385 PF14310 Fibronectin type III-like domain HQ397_RS09385 PF00933 Glycosyl hydrolase family 3 N terminal domain HQ397_RS09385 PF01915 Glycosyl hydrolase family 3 C-terminal domain HQ397_RS09395 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ397_RS09395 PF02896 PEP-utilising enzyme, TIM barrel domain HQ397_RS09395 PF00391 PEP-utilising enzyme, mobile domain HQ397_RS09400 PF03618 Kinase/pyrophosphorylase HQ397_RS09410 PF00324 Amino acid permease HQ397_RS09455 PF00664 ABC transporter transmembrane region HQ397_RS09455 PF00005 ABC transporter HQ397_RS09455 PF03412 Peptidase C39 family HQ397_RS09460 PF04055 Radical SAM superfamily HQ397_RS09460 PF16199 Radical_SAM C-terminal domain HQ397_RS09470 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS09470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ397_RS09475 PF00005 ABC transporter HQ397_RS09480 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS09485 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS09500 PF00376 MerR family regulatory protein HQ397_RS09500 PF09278 MerR, DNA binding HQ397_RS09525 PF00271 Helicase conserved C-terminal domain HQ397_RS09525 PF00270 DEAD/DEAH box helicase HQ397_RS09530 PF13302 Acetyltransferase (GNAT) domain HQ397_RS09555 PF07759 Protein of unknown function (DUF1615) HQ397_RS09560 PF00682 HMGL-like HQ397_RS09560 PF08502 LeuA allosteric (dimerisation) domain HQ397_RS09570 PF00117 Glutamine amidotransferase class-I HQ397_RS09570 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ397_RS09575 PF01113 Dihydrodipicolinate reductase, N-terminus HQ397_RS09575 PF05173 Dihydrodipicolinate reductase, C-terminus HQ397_RS09585 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ397_RS09590 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ397_RS09595 PF01842 ACT domain HQ397_RS09595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_RS09595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_RS09600 PF01219 Prokaryotic diacylglycerol kinase HQ397_RS09605 PF00793 DAHP synthetase I family HQ397_RS09610 PF00583 Acetyltransferase (GNAT) family HQ397_RS09615 PF00005 ABC transporter HQ397_RS09620 PF01032 FecCD transport family HQ397_RS09625 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS09625 PF00072 Response regulator receiver domain HQ397_RS09625 PF00989 PAS fold HQ397_RS09625 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS09625 PF01627 Hpt domain HQ397_RS09635 PF00437 Type II/IV secretion system protein HQ397_RS09640 PF00483 Nucleotidyl transferase HQ397_RS09655 PF07670 Nucleoside recognition HQ397_RS09655 PF07664 Ferrous iron transport protein B C terminus HQ397_RS09655 PF02421 Ferrous iron transport protein B HQ397_RS09665 PF01253 Translation initiation factor SUI1 HQ397_RS09670 PF01169 Uncharacterized protein family UPF0016 HQ397_RS09700 PF13185 GAF domain HQ397_RS09700 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS09725 PF09190 DALR domain HQ397_RS09725 PF01406 tRNA synthetases class I (C) catalytic domain HQ397_RS09730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ397_RS09740 PF00149 Calcineurin-like phosphoesterase HQ397_RS09745 PF03916 Polysulphide reductase, NrfD HQ397_RS09750 PF13247 4Fe-4S dicluster domain HQ397_RS09750 PF00037 4Fe-4S binding domain HQ397_RS09770 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ397_RS09775 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB HQ397_RS09780 PF00672 HAMP domain HQ397_RS09780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS09785 PF13426 PAS domain HQ397_RS09785 PF08447 PAS fold HQ397_RS09785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS09795 PF00069 Protein kinase domain HQ397_RS09795 PF03793 PASTA domain HQ397_RS09885 PF00589 Phage integrase family HQ397_RS09885 PF13356 Arm DNA-binding domain HQ397_RS09890 PF00589 Phage integrase family HQ397_RS09890 PF13356 Arm DNA-binding domain HQ397_RS09910 PF01066 CDP-alcohol phosphatidyltransferase HQ397_RS09915 PF08459 UvrC Helix-hairpin-helix N-terminal HQ397_RS09915 PF02151 UvrB/uvrC motif HQ397_RS09915 PF01541 GIY-YIG catalytic domain HQ397_RS09920 PF00072 Response regulator receiver domain HQ397_RS09920 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS09925 PF02348 Cytidylyltransferase HQ397_RS09930 PF03966 Trm112p-like protein HQ397_RS09935 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ397_RS09940 PF00664 ABC transporter transmembrane region HQ397_RS09940 PF00005 ABC transporter HQ397_RS09945 PF03772 Competence protein HQ397_RS09945 PF00753 Metallo-beta-lactamase superfamily HQ397_RS09960 PF05872 Bacterial protein of unknown function (DUF853) HQ397_RS09965 PF06291 Bor protein HQ397_RS09970 PF06291 Bor protein HQ397_RS09980 PF06406 StbA protein HQ397_RS09985 PF00561 alpha/beta hydrolase fold HQ397_RS09990 PF00005 ABC transporter HQ397_RS09990 PF03459 TOBE domain HQ397_RS09995 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS10005 PF02391 MoaE protein HQ397_RS10010 PF02597 ThiS family HQ397_RS10015 PF01967 MoaC family HQ397_RS10020 PF00994 Probable molybdopterin binding domain HQ397_RS10025 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ397_RS10030 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HQ397_RS10035 PF12801 4Fe-4S binding domain HQ397_RS10035 PF13237 4Fe-4S dicluster domain HQ397_RS10040 PF12800 4Fe-4S binding domain HQ397_RS10040 PF12838 4Fe-4S dicluster domain HQ397_RS10045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_RS10045 PF00384 Molybdopterin oxidoreductase HQ397_RS10045 PF01568 Molydopterin dinucleotide binding domain HQ397_RS10045 PF10518 TAT (twin-arginine translocation) pathway signal sequence HQ397_RS10055 PF00037 4Fe-4S binding domain HQ397_RS10055 PF13187 4Fe-4S dicluster domain HQ397_RS10055 PF12800 4Fe-4S binding domain HQ397_RS10060 PF04055 Radical SAM superfamily HQ397_RS10060 PF06463 Molybdenum Cofactor Synthesis C HQ397_RS10065 PF00672 HAMP domain HQ397_RS10065 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HQ397_RS10065 PF07730 Histidine kinase HQ397_RS10065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS10070 PF00072 Response regulator receiver domain HQ397_RS10070 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS10080 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS10080 PF00072 Response regulator receiver domain HQ397_RS10080 PF00672 HAMP domain HQ397_RS10080 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ397_RS10080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS10080 PF01627 Hpt domain HQ397_RS10105 PF13580 SIS domain HQ397_RS10110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ397_RS10110 PF02770 Acyl-CoA dehydrogenase, middle domain HQ397_RS10110 PF09317 Domain of unknown function (DUF1974) HQ397_RS10110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ397_RS10115 PF11849 Domain of unknown function (DUF3369) HQ397_RS10120 PF03448 MgtE intracellular N domain HQ397_RS10120 PF01769 Divalent cation transporter HQ397_RS10120 PF00571 CBS domain HQ397_RS10140 PF02119 Flagellar P-ring protein HQ397_RS10145 PF02107 Flagellar L-ring protein HQ397_RS10155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS10155 PF00460 Flagella basal body rod protein HQ397_RS10160 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS10160 PF07559 Flagellar basal body protein FlaE HQ397_RS10160 PF00460 Flagella basal body rod protein HQ397_RS10170 PF00460 Flagella basal body rod protein HQ397_RS10170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS10175 PF00460 Flagella basal body rod protein HQ397_RS10180 PF01739 CheR methyltransferase, SAM binding domain HQ397_RS10180 PF03705 CheR methyltransferase, all-alpha domain HQ397_RS10185 PF01584 CheW-like domain HQ397_RS10185 PF00072 Response regulator receiver domain HQ397_RS10190 PF13144 Chaperone for flagella basal body P-ring formation HQ397_RS10205 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ397_RS10210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS10220 PF01479 S4 domain HQ397_RS10220 PF00849 RNA pseudouridylate synthase HQ397_RS10225 PF01966 HD domain HQ397_RS10225 PF11871 Domain of unknown function (DUF3391) HQ397_RS10235 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ397_RS10240 PF04055 Radical SAM superfamily HQ397_RS10250 PF00455 DeoR C terminal sensor domain HQ397_RS10250 PF08220 DeoR-like helix-turn-helix domain HQ397_RS10255 PF00892 EamA-like transporter family HQ397_RS10260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS10285 PF00313 'Cold-shock' DNA-binding domain HQ397_RS10290 PF00364 Biotin-requiring enzyme HQ397_RS10290 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ397_RS10290 PF02817 e3 binding domain HQ397_RS10300 PF00676 Dehydrogenase E1 component HQ397_RS10305 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HQ397_RS10315 PF05472 DNA replication terminus site-binding protein (Ter protein) HQ397_RS10320 PF04434 SWIM zinc finger HQ397_RS10320 PF00176 SNF2 family N-terminal domain HQ397_RS10320 PF00271 Helicase conserved C-terminal domain HQ397_RS10325 PF04337 Protein of unknown function, DUF480 HQ397_RS10335 PF02706 Chain length determinant protein HQ397_RS10340 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ397_RS10345 PF00483 Nucleotidyl transferase HQ397_RS10350 PF04321 RmlD substrate binding domain HQ397_RS10355 PF16363 GDP-mannose 4,6 dehydratase HQ397_RS10360 PF02719 Polysaccharide biosynthesis protein HQ397_RS10365 PF02397 Bacterial sugar transferase HQ397_RS10370 PF01370 NAD dependent epimerase/dehydratase family HQ397_RS10375 PF00535 Glycosyl transferase family 2 HQ397_RS10380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ397_RS10380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ397_RS10380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ397_RS10380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ397_RS10385 PF01050 Mannose-6-phosphate isomerase HQ397_RS10385 PF00483 Nucleotidyl transferase HQ397_RS10390 PF00293 NUDIX domain HQ397_RS10395 PF01370 NAD dependent epimerase/dehydratase family HQ397_RS10400 PF16363 GDP-mannose 4,6 dehydratase HQ397_RS10420 PF00534 Glycosyl transferases group 1 HQ397_RS10420 PF13439 Glycosyltransferase Family 4 HQ397_RS10425 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_RS10460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS10460 PF00529 HlyD membrane-fusion protein of T1SS HQ397_RS10465 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ397_RS10465 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS10485 PF00849 RNA pseudouridylate synthase HQ397_RS10485 PF01479 S4 domain HQ397_RS10490 PF04079 Segregation and condensation complex subunit ScpB HQ397_RS10495 PF02616 Segregation and condensation protein ScpA HQ397_RS10500 PF01300 Telomere recombination HQ397_RS10505 PF02811 PHP domain HQ397_RS10510 PF00425 chorismate binding enzyme HQ397_RS10510 PF04715 Anthranilate synthase component I, N terminal region HQ397_RS10515 PF02885 Glycosyl transferase family, helical bundle domain HQ397_RS10515 PF00117 Glutamine amidotransferase class-I HQ397_RS10515 PF00591 Glycosyl transferase family, a/b domain HQ397_RS10520 PF02885 Glycosyl transferase family, helical bundle domain HQ397_RS10520 PF00591 Glycosyl transferase family, a/b domain HQ397_RS10525 PF00218 Indole-3-glycerol phosphate synthase HQ397_RS10525 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ397_RS10530 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS10535 PF00290 Tryptophan synthase alpha chain HQ397_RS10595 PF07670 Nucleoside recognition HQ397_RS10595 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_RS10595 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_RS10625 PF07690 Major Facilitator Superfamily HQ397_RS10630 PF01040 UbiA prenyltransferase family HQ397_RS10635 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ397_RS10640 PF00510 Cytochrome c oxidase subunit III HQ397_RS10645 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ397_RS10650 PF06481 COX Aromatic Rich Motif HQ397_RS10650 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ397_RS10660 PF00034 Cytochrome c HQ397_RS10660 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ397_RS10670 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ397_RS10690 PF00127 Copper binding proteins, plastocyanin/azurin family HQ397_RS10695 PF02424 ApbE family HQ397_RS10700 PF07690 Major Facilitator Superfamily HQ397_RS10715 PF03372 Endonuclease/Exonuclease/phosphatase family HQ397_RS10720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS10725 PF00873 AcrB/AcrD/AcrF family HQ397_RS10735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS10735 PF00529 HlyD membrane-fusion protein of T1SS HQ397_RS10740 PF00873 AcrB/AcrD/AcrF family HQ397_RS10760 PF03099 Biotin/lipoate A/B protein ligase family HQ397_RS10760 PF10437 Bacterial lipoate protein ligase C-terminus HQ397_RS10765 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS10765 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS10765 PF00563 EAL domain HQ397_RS10770 PF00873 AcrB/AcrD/AcrF family HQ397_RS10785 PF04143 Sulphur transport HQ397_RS10790 PF01022 Bacterial regulatory protein, arsR family HQ397_RS10805 PF02308 MgtC family HQ397_RS10810 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS10810 PF13407 Periplasmic binding protein domain HQ397_RS10820 PF00367 phosphotransferase system, EIIB HQ397_RS10820 PF02378 Phosphotransferase system, EIIC HQ397_RS10825 PF00294 pfkB family carbohydrate kinase HQ397_RS10830 PF11471 Maltoporin periplasmic N-terminal extension HQ397_RS10830 PF02264 LamB porin HQ397_RS10835 PF01556 DnaJ C terminal domain HQ397_RS10835 PF00226 DnaJ domain HQ397_RS10835 PF00684 DnaJ central domain HQ397_RS10840 PF00012 Hsp70 protein HQ397_RS10845 PF01025 GrpE HQ397_RS10850 PF01513 ATP-NAD kinase HQ397_RS10855 PF02463 RecF/RecN/SMC N terminal domain HQ397_RS10860 PF02833 DHHA2 domain HQ397_RS10860 PF01368 DHH family HQ397_RS10870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS10875 PF00005 ABC transporter HQ397_RS10875 PF02687 FtsX-like permease family HQ397_RS10875 PF12704 MacB-like periplasmic core domain HQ397_RS10880 PF02321 Outer membrane efflux protein HQ397_RS10885 PF08021 Siderophore-interacting FAD-binding domain HQ397_RS10885 PF04954 Siderophore-interacting protein HQ397_RS10890 PF00793 DAHP synthetase I family HQ397_RS10895 PF00816 H-NS histone family HQ397_RS10910 PF01266 FAD dependent oxidoreductase HQ397_RS10915 PF01381 Helix-turn-helix HQ397_RS10915 PF07883 Cupin domain HQ397_RS10920 PF00171 Aldehyde dehydrogenase family HQ397_RS10925 PF00202 Aminotransferase class-III HQ397_RS10930 PF00324 Amino acid permease HQ397_RS10940 PF13520 Amino acid permease HQ397_RS10950 PF02690 Na+/Pi-cotransporter HQ397_RS10955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_RS10955 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ397_RS10960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ397_RS10965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS10965 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS10965 PF01627 Hpt domain HQ397_RS10965 PF00072 Response regulator receiver domain HQ397_RS10965 PF00989 PAS fold HQ397_RS10965 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS10980 PF01048 Phosphorylase superfamily HQ397_RS11000 PF00005 ABC transporter HQ397_RS11000 PF12848 ABC transporter HQ397_RS11015 PF13474 SnoaL-like domain HQ397_RS11020 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS11020 PF14821 Threonine synthase N terminus HQ397_RS11025 PF08544 GHMP kinases C terminal HQ397_RS11025 PF00288 GHMP kinases N terminal domain HQ397_RS11030 PF01842 ACT domain HQ397_RS11030 PF03447 Homoserine dehydrogenase, NAD binding domain HQ397_RS11030 PF00742 Homoserine dehydrogenase HQ397_RS11030 PF00696 Amino acid kinase family HQ397_RS11030 PF13840 ACT domain HQ397_RS11035 PF00588 SpoU rRNA Methylase family HQ397_RS11040 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HQ397_RS11055 PF03737 Aldolase/RraA HQ397_RS11065 PF00072 Response regulator receiver domain HQ397_RS11065 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS11080 PF00005 ABC transporter HQ397_RS11080 PF00664 ABC transporter transmembrane region HQ397_RS11085 PF00005 ABC transporter HQ397_RS11085 PF00664 ABC transporter transmembrane region HQ397_RS11105 PF18389 TrmO C-terminal domain HQ397_RS11105 PF01980 tRNA-methyltransferase O HQ397_RS11110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ397_RS11110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ397_RS11120 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_RS11120 PF07724 AAA domain (Cdc48 subfamily) HQ397_RS11120 PF02861 Clp amino terminal domain, pathogenicity island component HQ397_RS11120 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_RS11120 PF17871 AAA lid domain HQ397_RS11125 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS11130 PF00381 PTS HPr component phosphorylation site HQ397_RS11135 PF02896 PEP-utilising enzyme, TIM barrel domain HQ397_RS11135 PF00391 PEP-utilising enzyme, mobile domain HQ397_RS11135 PF05524 PEP-utilising enzyme, N-terminal HQ397_RS11140 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ397_RS11145 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS11155 PF01292 Prokaryotic cytochrome b561 HQ397_RS11170 PF13476 AAA domain HQ397_RS11175 PF12320 Type 5 capsule protein repressor C-terminal domain HQ397_RS11175 PF00149 Calcineurin-like phosphoesterase HQ397_RS11185 PF04381 Putative exonuclease, RdgC HQ397_RS11195 PF00999 Sodium/hydrogen exchanger family HQ397_RS11195 PF02254 TrkA-N domain HQ397_RS11200 PF04389 Peptidase family M28 HQ397_RS11200 PF04151 Bacterial pre-peptidase C-terminal domain HQ397_RS11210 PF02887 Pyruvate kinase, alpha/beta domain HQ397_RS11210 PF00224 Pyruvate kinase, barrel domain HQ397_RS11215 PF00924 Mechanosensitive ion channel HQ397_RS11215 PF12795 Mechanosensitive ion channel porin domain HQ397_RS11215 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ397_RS11245 PF03949 Malic enzyme, NAD binding domain HQ397_RS11245 PF00390 Malic enzyme, N-terminal domain HQ397_RS11250 PF00072 Response regulator receiver domain HQ397_RS11260 PF13247 4Fe-4S dicluster domain HQ397_RS11265 PF12838 4Fe-4S dicluster domain HQ397_RS11265 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ397_RS11265 PF01568 Molydopterin dinucleotide binding domain HQ397_RS11265 PF00384 Molybdopterin oxidoreductase HQ397_RS11265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_RS11265 PF12838 4Fe-4S dicluster domain HQ397_RS11265 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ397_RS11265 PF01568 Molydopterin dinucleotide binding domain HQ397_RS11265 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_RS11265 PF00384 Molybdopterin oxidoreductase HQ397_RS11300 PF02634 FdhD/NarQ family HQ397_RS11310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS11310 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS11310 PF00989 PAS fold HQ397_RS11315 PF02954 Bacterial regulatory protein, Fis family HQ397_RS11315 PF00072 Response regulator receiver domain HQ397_RS11315 PF00158 Sigma-54 interaction domain HQ397_RS11320 PF12849 PBP superfamily domain HQ397_RS11325 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS11330 PF00005 ABC transporter HQ397_RS11335 PF12804 MobA-like NTP transferase domain HQ397_RS11340 PF03453 MoeA N-terminal region (domain I and II) HQ397_RS11340 PF03454 MoeA C-terminal region (domain IV) HQ397_RS11340 PF00994 Probable molybdopterin binding domain HQ397_RS11345 PF04632 Fusaric acid resistance protein family HQ397_RS11360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS11360 PF08447 PAS fold HQ397_RS11360 PF13426 PAS domain HQ397_RS11380 PF05114 Protein of unknown function (DUF692) HQ397_RS11390 PF10725 Protein of unknown function (DUF2517) HQ397_RS11415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS11420 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS11425 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_RS11425 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS11435 PF00005 ABC transporter HQ397_RS11435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS11445 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ397_RS11455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS11455 PF08447 PAS fold HQ397_RS11470 PF01396 Topoisomerase DNA binding C4 zinc finger HQ397_RS11470 PF01751 Toprim domain HQ397_RS11470 PF01131 DNA topoisomerase HQ397_RS11470 PF08272 Topoisomerase I zinc-ribbon-like HQ397_RS11475 PF04996 Succinylarginine dihydrolase HQ397_RS11480 PF08496 Peptidase family S49 N-terminal HQ397_RS11480 PF01343 Peptidase family S49 HQ397_RS11485 PF00106 short chain dehydrogenase HQ397_RS11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS11490 PF03466 LysR substrate binding domain HQ397_RS11495 PF07690 Major Facilitator Superfamily HQ397_RS11500 PF00155 Aminotransferase class I and II HQ397_RS11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS11510 PF03466 LysR substrate binding domain HQ397_RS11515 PF00709 Adenylosuccinate synthetase HQ397_RS11520 PF01161 Phosphatidylethanolamine-binding protein HQ397_RS11530 PF01204 Trehalase HQ397_RS11535 PF00579 tRNA synthetases class I (W and Y) HQ397_RS11540 PF01551 Peptidase family M23 HQ397_RS11540 PF08525 Opacity-associated protein A N-terminal motif HQ397_RS11540 PF01476 LysM domain HQ397_RS11545 PF03702 Anhydro-N-acetylmuramic acid kinase HQ397_RS11550 PF01965 DJ-1/PfpI family HQ397_RS11555 PF01042 Endoribonuclease L-PSP HQ397_RS11565 PF00456 Transketolase, thiamine diphosphate binding domain HQ397_RS11565 PF02780 Transketolase, C-terminal domain HQ397_RS11565 PF02779 Transketolase, pyrimidine binding domain HQ397_RS11570 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ397_RS11570 PF02772 S-adenosylmethionine synthetase, central domain HQ397_RS11570 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ397_RS11575 PF10263 SprT-like family HQ397_RS11575 PF17283 SprT-like zinc ribbon domain HQ397_RS11580 PF04231 Endonuclease I HQ397_RS11585 PF04452 RNA methyltransferase HQ397_RS11590 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ397_RS11590 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ397_RS11595 PF00672 HAMP domain HQ397_RS11595 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS11595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS11600 PF02622 Uncharacterized ACR, COG1678 HQ397_RS11605 PF03652 Holliday junction resolvase HQ397_RS11610 PF00854 POT family HQ397_RS11620 PF07726 ATPase family associated with various cellular activities (AAA) HQ397_RS11620 PF17863 AAA lid domain HQ397_RS11630 PF11992 Domain of unknown function (DUF3488) HQ397_RS11630 PF13559 Domain of unknown function (DUF4129) HQ397_RS11630 PF01841 Transglutaminase-like superfamily HQ397_RS11640 PF01235 Sodium:alanine symporter family HQ397_RS11645 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ397_RS11660 PF03167 Uracil DNA glycosylase superfamily HQ397_RS11665 PF01228 Glycine radical HQ397_RS11670 PF00375 Sodium:dicarboxylate symporter family HQ397_RS11675 PF00793 DAHP synthetase I family HQ397_RS11680 PF13369 Transglutaminase-like superfamily HQ397_RS11690 PF13847 Methyltransferase domain HQ397_RS11690 PF17827 PrmC N-terminal domain HQ397_RS11695 PF03462 PCRF domain HQ397_RS11695 PF00472 RF-1 domain HQ397_RS11700 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ397_RS11700 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ397_RS11700 PF01488 Shikimate / quinate 5-dehydrogenase HQ397_RS11705 PF03550 Outer membrane lipoprotein LolB HQ397_RS11710 PF08544 GHMP kinases C terminal HQ397_RS11710 PF00288 GHMP kinases N terminal domain HQ397_RS11720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ397_RS11720 PF14572 Phosphoribosyl synthetase-associated domain HQ397_RS11725 PF00149 Calcineurin-like phosphoesterase HQ397_RS11725 PF02872 5'-nucleotidase, C-terminal domain HQ397_RS11730 PF01195 Peptidyl-tRNA hydrolase HQ397_RS11735 PF01926 50S ribosome-binding GTPase HQ397_RS11735 PF06071 Protein of unknown function (DUF933) HQ397_RS11780 PF03600 Citrate transporter HQ397_RS11780 PF02080 TrkA-C domain HQ397_RS11785 PF04973 Nicotinamide mononucleotide transporter HQ397_RS11800 PF04266 ASCH domain HQ397_RS11810 PF16657 Maltogenic Amylase, C-terminal domain HQ397_RS11810 PF00128 Alpha amylase, catalytic domain HQ397_RS11820 PF00005 ABC transporter HQ397_RS11820 PF12848 ABC transporter HQ397_RS11825 PF00005 ABC transporter HQ397_RS11825 PF12848 ABC transporter HQ397_RS11830 PF07690 Major Facilitator Superfamily HQ397_RS11835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_RS11835 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ397_RS11835 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ397_RS11835 PF10371 Domain of unknown function HQ397_RS11835 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ397_RS11840 PF07690 Major Facilitator Superfamily HQ397_RS11845 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS11855 PF00171 Aldehyde dehydrogenase family HQ397_RS11860 PF04958 Arginine N-succinyltransferase beta subunit HQ397_RS11865 PF00202 Aminotransferase class-III HQ397_RS11870 PF00117 Glutamine amidotransferase class-I HQ397_RS11880 PF00579 tRNA synthetases class I (W and Y) HQ397_RS11885 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS11890 PF00834 Ribulose-phosphate 3 epimerase family HQ397_RS11900 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ397_RS11910 PF01761 3-dehydroquinate synthase HQ397_RS11915 PF01202 Shikimate kinase HQ397_RS11920 PF11741 AMIN domain HQ397_RS11920 PF00263 Bacterial type II and III secretion system protein HQ397_RS11920 PF03958 Bacterial type II/III secretion system short domain HQ397_RS11920 PF07660 Secretin and TonB N terminus short domain HQ397_RS11930 PF04350 Pilus assembly protein, PilO HQ397_RS11940 PF11104 Type IV pilus assembly protein PilM; HQ397_RS11945 PF00905 Penicillin binding protein transpeptidase domain HQ397_RS11945 PF17092 Penicillin-binding protein OB-like domain HQ397_RS11945 PF00912 Transglycosylase HQ397_RS11950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS11950 PF03466 LysR substrate binding domain HQ397_RS11955 PF00672 HAMP domain HQ397_RS11955 PF02743 Cache domain HQ397_RS11955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS11970 PF03466 LysR substrate binding domain HQ397_RS11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS11985 PF01551 Peptidase family M23 HQ397_RS11985 PF08525 Opacity-associated protein A N-terminal motif HQ397_RS11985 PF01476 LysM domain HQ397_RS11995 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ397_RS11995 PF00924 Mechanosensitive ion channel HQ397_RS11995 PF12795 Mechanosensitive ion channel porin domain HQ397_RS12000 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ397_RS12005 PF02743 Cache domain HQ397_RS12005 PF00672 HAMP domain HQ397_RS12005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS12010 PF00890 FAD binding domain HQ397_RS12010 PF02910 Fumarate reductase flavoprotein C-term HQ397_RS12015 PF13183 4Fe-4S dicluster domain HQ397_RS12015 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ397_RS12020 PF02300 Fumarate reductase subunit C HQ397_RS12025 PF02313 Fumarate reductase subunit D HQ397_RS12045 PF06224 Winged helix DNA-binding domain HQ397_RS12060 PF00501 AMP-binding enzyme HQ397_RS12080 PF00072 Response regulator receiver domain HQ397_RS12080 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS12085 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS12085 PF08521 Two-component sensor kinase N-terminal HQ397_RS12085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS12105 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_RS12115 PF01132 Elongation factor P (EF-P) OB domain HQ397_RS12115 PF08207 Elongation factor P (EF-P) KOW-like domain HQ397_RS12115 PF09285 Elongation factor P, C-terminal HQ397_RS12120 PF09997 Predicted membrane protein (DUF2238) HQ397_RS12130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_RS12130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_RS12140 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS12150 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS12160 PF03466 LysR substrate binding domain HQ397_RS12160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS12165 PF05230 MASE2 domain HQ397_RS12165 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS12170 PF00313 'Cold-shock' DNA-binding domain HQ397_RS12175 PF00857 Isochorismatase family HQ397_RS12180 PF01494 FAD binding domain HQ397_RS12185 PF01938 TRAM domain HQ397_RS12185 PF04055 Radical SAM superfamily HQ397_RS12185 PF00919 Uncharacterized protein family UPF0004 HQ397_RS12190 PF02562 PhoH-like protein HQ397_RS12195 PF02130 Uncharacterized protein family UPF0054 HQ397_RS12200 PF00571 CBS domain HQ397_RS12200 PF03471 Transporter associated domain HQ397_RS12205 PF00795 Carbon-nitrogen hydrolase HQ397_RS12210 PF07295 Zinc-ribbon containing domain HQ397_RS12215 PF00133 tRNA synthetases class I (I, L, M and V) HQ397_RS12215 PF13603 Leucyl-tRNA synthetase, Domain 2 HQ397_RS12215 PF08264 Anticodon-binding domain of tRNA HQ397_RS12230 PF01467 Cytidylyltransferase-like HQ397_RS12240 PF02590 Predicted SPOUT methyltransferase HQ397_RS12245 PF03717 Penicillin-binding Protein dimerisation domain HQ397_RS12245 PF00905 Penicillin binding protein transpeptidase domain HQ397_RS12250 PF01098 Cell cycle protein HQ397_RS12255 PF13406 Transglycosylase SLT domain HQ397_RS12260 PF03330 Lytic transglycolase HQ397_RS12260 PF05036 Sporulation related domain HQ397_RS12265 PF07943 Penicillin-binding protein 5, C-terminal domain HQ397_RS12265 PF00768 D-alanyl-D-alanine carboxypeptidase HQ397_RS12270 PF04359 Protein of unknown function (DUF493) HQ397_RS12275 PF03099 Biotin/lipoate A/B protein ligase family HQ397_RS12280 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ397_RS12280 PF04055 Radical SAM superfamily HQ397_RS12290 PF06821 Serine hydrolase HQ397_RS12295 PF02508 Rnf-Nqr subunit, membrane protein HQ397_RS12310 PF13411 MerR HTH family regulatory protein HQ397_RS12315 PF01368 DHH family HQ397_RS12315 PF02272 DHHA1 domain HQ397_RS12315 PF17768 RecJ OB domain HQ397_RS12320 PF10411 Disulfide bond isomerase protein N-terminus HQ397_RS12320 PF13098 Thioredoxin-like domain HQ397_RS12325 PF01741 Large-conductance mechanosensitive channel, MscL HQ397_RS12330 PF02899 Phage integrase, N-terminal SAM-like domain HQ397_RS12330 PF00589 Phage integrase family HQ397_RS12335 PF00258 Flavodoxin HQ397_RS12340 PF01523 Putative modulator of DNA gyrase HQ397_RS12345 PF01523 Putative modulator of DNA gyrase HQ397_RS12355 PF17969 L,D-transpeptidase C-terminal domain HQ397_RS12355 PF03734 L,D-transpeptidase catalytic domain HQ397_RS12360 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase HQ397_RS12365 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HQ397_RS12385 PF01568 Molydopterin dinucleotide binding domain HQ397_RS12385 PF00384 Molybdopterin oxidoreductase HQ397_RS12385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ397_RS12390 PF03916 Polysulphide reductase, NrfD HQ397_RS12395 PF13247 4Fe-4S dicluster domain HQ397_RS12400 PF13247 4Fe-4S dicluster domain HQ397_RS12405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS12405 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS12405 PF00989 PAS fold HQ397_RS12410 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS12410 PF00072 Response regulator receiver domain HQ397_RS12415 PF07694 5TMR of 5TMR-LYT HQ397_RS12415 PF06580 Histidine kinase HQ397_RS12420 PF04397 LytTr DNA-binding domain HQ397_RS12420 PF00072 Response regulator receiver domain HQ397_RS12425 PF02554 Carbon starvation protein CstA HQ397_RS12425 PF13722 5TM C-terminal transporter carbon starvation CstA HQ397_RS12430 PF03575 Peptidase family S51 HQ397_RS12435 PF00206 Lyase HQ397_RS12435 PF10415 Fumarase C C-terminus HQ397_RS12445 PF02635 DsrE/DsrF-like family HQ397_RS12450 PF00563 EAL domain HQ397_RS12450 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS12450 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS12455 PF07690 Major Facilitator Superfamily HQ397_RS12460 PF00013 KH domain HQ397_RS12460 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ397_RS12460 PF01138 3' exoribonuclease family, domain 1 HQ397_RS12460 PF03725 3' exoribonuclease family, domain 2 HQ397_RS12460 PF00575 S1 RNA binding domain HQ397_RS12465 PF00312 Ribosomal protein S15 HQ397_RS12470 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ397_RS12470 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ397_RS12470 PF09157 Pseudouridine synthase II TruB, C-terminal HQ397_RS12475 PF02033 Ribosome-binding factor A HQ397_RS12480 PF00009 Elongation factor Tu GTP binding domain HQ397_RS12480 PF11987 Translation-initiation factor 2 HQ397_RS12480 PF08364 Bacterial translation initiation factor IF-2 associated region HQ397_RS12480 PF04760 Translation initiation factor IF-2, N-terminal region HQ397_RS12485 PF13184 NusA-like KH domain HQ397_RS12485 PF08529 NusA N-terminal domain HQ397_RS12485 PF00575 S1 RNA binding domain HQ397_RS12490 PF02576 RimP N-terminal domain HQ397_RS12490 PF17384 RimP C-terminal SH3 domain HQ397_RS12505 PF03840 Preprotein translocase SecG subunit HQ397_RS12510 PF00121 Triosephosphate isomerase HQ397_RS12515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ397_RS12515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ397_RS12515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ397_RS12515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ397_RS12520 PF00809 Pterin binding enzyme HQ397_RS12525 PF01434 Peptidase family M41 HQ397_RS12525 PF17862 AAA+ lid domain HQ397_RS12525 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_RS12525 PF06480 FtsH Extracellular HQ397_RS12530 PF01728 FtsJ-like methyltransferase HQ397_RS12535 PF01985 CRS1 / YhbY (CRM) domain HQ397_RS12550 PF00691 OmpA family HQ397_RS12550 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_RS12555 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS12560 PF02609 Exonuclease VII small subunit HQ397_RS12565 PF00348 Polyprenyl synthetase HQ397_RS12570 PF02779 Transketolase, pyrimidine binding domain HQ397_RS12570 PF02780 Transketolase, C-terminal domain HQ397_RS12570 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HQ397_RS12575 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS12575 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_RS12580 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS12585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS12590 PF00005 ABC transporter HQ397_RS12590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS12595 PF04608 Phosphatidylglycerophosphatase A HQ397_RS12600 PF00586 AIR synthase related protein, N-terminal domain HQ397_RS12600 PF02769 AIR synthase related protein, C-terminal domain HQ397_RS12605 PF01029 NusB family HQ397_RS12610 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ397_RS12620 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ397_RS12620 PF00925 GTP cyclohydrolase II HQ397_RS12625 PF00677 Lumazine binding domain HQ397_RS12630 PF01872 RibD C-terminal domain HQ397_RS12630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ397_RS12635 PF03477 ATP cone domain HQ397_RS12645 PF00464 Serine hydroxymethyltransferase HQ397_RS12660 PF02613 Nitrate reductase delta subunit HQ397_RS12680 PF00563 EAL domain HQ397_RS12680 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS12680 PF13188 PAS domain HQ397_RS12680 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS12690 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS12690 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ397_RS12690 PF00501 AMP-binding enzyme HQ397_RS12695 PF01220 Dehydroquinase class II HQ397_RS12700 PF00364 Biotin-requiring enzyme HQ397_RS12705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ397_RS12705 PF02785 Biotin carboxylase C-terminal domain HQ397_RS12705 PF00289 Biotin carboxylase, N-terminal domain HQ397_RS12715 PF00474 Sodium:solute symporter family HQ397_RS12720 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ397_RS12720 PF00367 phosphotransferase system, EIIB HQ397_RS12720 PF02378 Phosphotransferase system, EIIC HQ397_RS12730 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_RS12730 PF00107 Zinc-binding dehydrogenase HQ397_RS12745 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_RS12745 PF12464 Maltose acetyltransferase HQ397_RS12750 PF00881 Nitroreductase family HQ397_RS12755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_RS12755 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS12760 PF01343 Peptidase family S49 HQ397_RS12775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ397_RS12775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ397_RS12780 PF07023 Protein of unknown function (DUF1315) HQ397_RS12785 PF17763 Glutaminase/Asparaginase C-terminal domain HQ397_RS12785 PF00710 Asparaginase, N-terminal HQ397_RS12790 PF03616 Sodium/glutamate symporter HQ397_RS12795 PF00672 HAMP domain HQ397_RS12795 PF02743 Cache domain HQ397_RS12795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS12805 PF00152 tRNA synthetases class II (D, K and N) HQ397_RS12805 PF01336 OB-fold nucleic acid binding domain HQ397_RS12810 PF02567 Phenazine biosynthesis-like protein HQ397_RS12815 PF00667 FAD binding domain HQ397_RS12815 PF00258 Flavodoxin HQ397_RS12815 PF00175 Oxidoreductase NAD-binding domain HQ397_RS12820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ397_RS12820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ397_RS12825 PF01507 Phosphoadenosine phosphosulfate reductase family HQ397_RS12830 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ397_RS12835 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS12840 PF00005 ABC transporter HQ397_RS12840 PF00571 CBS domain HQ397_RS12845 PF00186 Dihydrofolate reductase HQ397_RS12850 PF12821 Threonine/Serine exporter, ThrE HQ397_RS12855 PF06738 Putative threonine/serine exporter HQ397_RS12865 PF00994 Probable molybdopterin binding domain HQ397_RS12875 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_RS12875 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_RS12890 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_RS12890 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_RS12915 PF00221 Aromatic amino acid lyase HQ397_RS12925 PF07977 FabA-like domain HQ397_RS12930 PF00501 AMP-binding enzyme HQ397_RS12930 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS12940 PF00550 Phosphopantetheine attachment site HQ397_RS12945 PF00550 Phosphopantetheine attachment site HQ397_RS12980 PF00034 Cytochrome c HQ397_RS12980 PF03150 Di-haem cytochrome c peroxidase HQ397_RS12990 PF04227 Indigoidine synthase A like protein HQ397_RS12995 PF00294 pfkB family carbohydrate kinase HQ397_RS13015 PF00582 Universal stress protein family HQ397_RS13025 PF00171 Aldehyde dehydrogenase family HQ397_RS13030 PF00696 Amino acid kinase family HQ397_RS13030 PF01472 PUA domain HQ397_RS13035 PF07417 Sigma factor-binding transcriptional regulator Crl HQ397_RS13040 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HQ397_RS13045 PF00156 Phosphoribosyl transferase domain HQ397_RS13050 PF01546 Peptidase family M20/M25/M40 HQ397_RS13050 PF07687 Peptidase dimerisation domain HQ397_RS13055 PF00005 ABC transporter HQ397_RS13055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS13060 PF00005 ABC transporter HQ397_RS13060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ397_RS13070 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS13070 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ397_RS13075 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS13080 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS13080 PF00593 TonB dependent receptor HQ397_RS13090 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS13095 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS13100 PF02472 Biopolymer transport protein ExbD/TolR HQ397_RS13115 PF00704 Glycosyl hydrolases family 18 HQ397_RS13115 PF06483 Chitinase C HQ397_RS13150 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_RS13155 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_RS13160 PF00672 HAMP domain HQ397_RS13160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS13170 PF00313 'Cold-shock' DNA-binding domain HQ397_RS13210 PF00929 Exonuclease HQ397_RS13215 PF03193 RsgA GTPase HQ397_RS13220 PF02666 Phosphatidylserine decarboxylase HQ397_RS13225 PF09905 DNA-binding protein VF530 HQ397_RS13240 PF04224 Protein of unknown function, DUF417 HQ397_RS13245 PF02627 Carboxymuconolactone decarboxylase family HQ397_RS13260 PF00563 EAL domain HQ397_RS13260 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS13260 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS13265 PF06877 Regulator of ribonuclease activity B HQ397_RS13270 PF00801 PKD domain HQ397_RS13270 PF05547 Immune inhibitor A peptidase M6 HQ397_RS13285 PF00561 alpha/beta hydrolase fold HQ397_RS13290 PF00664 ABC transporter transmembrane region HQ397_RS13290 PF00005 ABC transporter HQ397_RS13295 PF06004 Bacterial protein of unknown function (DUF903) HQ397_RS13300 PF05922 Peptidase inhibitor I9 HQ397_RS13300 PF00082 Subtilase family HQ397_RS13305 PF00581 Rhodanese-like domain HQ397_RS13310 PF04960 Glutaminase HQ397_RS13315 PF04320 Protein with unknown function (DUF469) HQ397_RS13320 PF02390 Putative methyltransferase HQ397_RS13325 PF01483 Proprotein convertase P-domain HQ397_RS13325 PF04389 Peptidase family M28 HQ397_RS13330 PF00155 Aminotransferase class I and II HQ397_RS13335 PF12792 CSS motif domain associated with EAL HQ397_RS13335 PF00563 EAL domain HQ397_RS13340 PF01370 NAD dependent epimerase/dehydratase family HQ397_RS13340 PF08338 Domain of unknown function (DUF1731) HQ397_RS13350 PF00005 ABC transporter HQ397_RS13355 PF13472 GDSL-like Lipase/Acylhydrolase family HQ397_RS13360 PF01584 CheW-like domain HQ397_RS13360 PF00072 Response regulator receiver domain HQ397_RS13385 PF06826 Predicted Permease Membrane Region HQ397_RS13385 PF02080 TrkA-C domain HQ397_RS13390 PF03006 Haemolysin-III related HQ397_RS13395 PF00282 Pyridoxal-dependent decarboxylase conserved domain HQ397_RS13400 PF04279 Intracellular septation protein A HQ397_RS13405 PF03795 YCII-related domain HQ397_RS13410 PF00459 Inositol monophosphatase family HQ397_RS13420 PF00483 Nucleotidyl transferase HQ397_RS13425 PF00854 POT family HQ397_RS13430 PF00072 Response regulator receiver domain HQ397_RS13460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS13465 PF02321 Outer membrane efflux protein HQ397_RS13470 PF01207 Dihydrouridine synthase (Dus) HQ397_RS13475 PF02954 Bacterial regulatory protein, Fis family HQ397_RS13505 PF18337 RapA N-terminal Tudor like domain HQ397_RS13505 PF00176 SNF2 family N-terminal domain HQ397_RS13505 PF00271 Helicase conserved C-terminal domain HQ397_RS13505 PF18339 RapA N-terminal Tudor like domain 1 HQ397_RS13505 PF12137 RNA polymerase recycling family C-terminal HQ397_RS13510 PF00849 RNA pseudouridylate synthase HQ397_RS13520 PF00563 EAL domain HQ397_RS13520 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS13520 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS13520 PF13188 PAS domain HQ397_RS13530 PF00118 TCP-1/cpn60 chaperonin family HQ397_RS13535 PF00166 Chaperonin 10 Kd subunit HQ397_RS13540 PF01554 MatE HQ397_RS13545 PF04186 FxsA cytoplasmic membrane protein HQ397_RS13550 PF10415 Fumarase C C-terminus HQ397_RS13550 PF00206 Lyase HQ397_RS13555 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ397_RS13560 PF00267 Gram-negative porin HQ397_RS13565 PF07690 Major Facilitator Superfamily HQ397_RS13570 PF03466 LysR substrate binding domain HQ397_RS13570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS13575 PF01447 Thermolysin metallopeptidase, catalytic domain HQ397_RS13575 PF03413 Peptidase propeptide and YPEB domain HQ397_RS13575 PF07504 Fungalysin/Thermolysin Propeptide Motif HQ397_RS13575 PF04151 Bacterial pre-peptidase C-terminal domain HQ397_RS13575 PF02868 Thermolysin metallopeptidase, alpha-helical domain HQ397_RS13580 PF13302 Acetyltransferase (GNAT) domain HQ397_RS13585 PF13302 Acetyltransferase (GNAT) domain HQ397_RS13600 PF07690 Major Facilitator Superfamily HQ397_RS13605 PF01725 Ham1 family HQ397_RS13610 PF04055 Radical SAM superfamily HQ397_RS13610 PF06969 HemN C-terminal domain HQ397_RS13615 PF03889 Alternative ribosome-rescue factor A HQ397_RS13620 PF01872 RibD C-terminal domain HQ397_RS13625 PF13411 MerR HTH family regulatory protein HQ397_RS13630 PF01808 AICARFT/IMPCHase bienzyme HQ397_RS13630 PF02142 MGS-like domain HQ397_RS13635 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ397_RS13635 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ397_RS13635 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ397_RS13650 PF00128 Alpha amylase, catalytic domain HQ397_RS13665 PF04545 Sigma-70, region 4 HQ397_RS13665 PF04539 Sigma-70 region 3 HQ397_RS13665 PF04546 Sigma-70, non-essential region HQ397_RS13665 PF00140 Sigma-70 factor, region 1.2 HQ397_RS13665 PF03979 Sigma-70 factor, region 1.1 HQ397_RS13665 PF04542 Sigma-70 region 2 HQ397_RS13670 PF01807 CHC2 zinc finger HQ397_RS13670 PF08275 DNA primase catalytic core, N-terminal domain HQ397_RS13670 PF08278 DNA primase DnaG DnaB-binding HQ397_RS13670 PF10410 DnaB-helicase binding domain of primase HQ397_RS13675 PF09424 Yqey-like protein HQ397_RS13680 PF01165 Ribosomal protein S21 HQ397_RS13685 PF00814 Glycoprotease family HQ397_RS13690 PF00140 Sigma-70 factor, region 1.2 HQ397_RS13690 PF04542 Sigma-70 region 2 HQ397_RS13690 PF04539 Sigma-70 region 3 HQ397_RS13690 PF04545 Sigma-70, region 4 HQ397_RS13695 PF01476 LysM domain HQ397_RS13695 PF01551 Peptidase family M23 HQ397_RS13715 PF01142 tRNA pseudouridine synthase D (TruD) HQ397_RS13720 PF02542 YgbB family HQ397_RS13725 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HQ397_RS13730 PF04977 Septum formation initiator HQ397_RS13735 PF03952 Enolase, N-terminal domain HQ397_RS13735 PF00113 Enolase, C-terminal TIM barrel domain HQ397_RS13740 PF06418 CTP synthase N-terminus HQ397_RS13740 PF00117 Glutamine amidotransferase class-I HQ397_RS13745 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ397_RS13750 PF04607 Region found in RelA / SpoT proteins HQ397_RS13750 PF13291 ACT domain HQ397_RS13750 PF02824 TGS domain HQ397_RS13755 PF01938 TRAM domain HQ397_RS13755 PF05958 tRNA (Uracil-5-)-methyltransferase HQ397_RS13760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ397_RS13760 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS13760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS13760 PF00672 HAMP domain HQ397_RS13760 PF01627 Hpt domain HQ397_RS13760 PF00072 Response regulator receiver domain HQ397_RS13765 PF07308 Protein of unknown function (DUF1456) HQ397_RS13780 PF08013 Tagatose 6 phosphate kinase HQ397_RS13785 PF01380 SIS domain HQ397_RS13790 PF03830 PTS system sorbose subfamily IIB component HQ397_RS13795 PF03609 PTS system sorbose-specific iic component HQ397_RS13800 PF03613 PTS system mannose/fructose/sorbose family IID component HQ397_RS13805 PF03610 PTS system fructose IIA component HQ397_RS13810 PF01979 Amidohydrolase family HQ397_RS13815 PF01116 Fructose-bisphosphate aldolase class-II HQ397_RS13825 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ397_RS13830 PF02565 Recombination protein O C terminal HQ397_RS13830 PF11967 Recombination protein O N terminal HQ397_RS13835 PF07650 KH domain HQ397_RS13835 PF01926 50S ribosome-binding GTPase HQ397_RS13840 PF00035 Double-stranded RNA binding motif HQ397_RS13840 PF14622 Ribonuclease-III-like HQ397_RS13845 PF10502 Signal peptidase, peptidase S26 HQ397_RS13850 PF00679 Elongation factor G C-terminus HQ397_RS13850 PF00009 Elongation factor Tu GTP binding domain HQ397_RS13850 PF03144 Elongation factor Tu domain 2 HQ397_RS13850 PF06421 GTP-binding protein LepA C-terminus HQ397_RS13860 PF03888 MucB/RseB N-terminal domain HQ397_RS13860 PF17188 MucB/RseB C-terminal domain HQ397_RS13865 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ397_RS13865 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ397_RS13870 PF04542 Sigma-70 region 2 HQ397_RS13870 PF08281 Sigma-70, region 4 HQ397_RS13875 PF02910 Fumarate reductase flavoprotein C-term HQ397_RS13875 PF00890 FAD binding domain HQ397_RS13885 PF03937 Flavinator of succinate dehydrogenase HQ397_RS13890 PF01571 Aminomethyltransferase folate-binding domain HQ397_RS13895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS13895 PF03466 LysR substrate binding domain HQ397_RS13910 PF03091 CutA1 divalent ion tolerance protein HQ397_RS13930 PF01266 FAD dependent oxidoreductase HQ397_RS13935 PF01116 Fructose-bisphosphate aldolase class-II HQ397_RS13940 PF00162 Phosphoglycerate kinase HQ397_RS13945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ397_RS13945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ397_RS13950 PF00480 ROK family HQ397_RS13955 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ397_RS13960 PF00293 NUDIX domain HQ397_RS13960 PF09297 NADH pyrophosphatase zinc ribbon domain HQ397_RS13965 PF00171 Aldehyde dehydrogenase family HQ397_RS13965 PF01619 Proline dehydrogenase HQ397_RS13965 PF14850 DNA-binding domain of Proline dehydrogenase HQ397_RS13965 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HQ397_RS13970 PF08239 Bacterial SH3 domain HQ397_RS13975 PF00027 Cyclic nucleotide-binding domain HQ397_RS13975 PF00520 Ion transport protein HQ397_RS13980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS13980 PF00672 HAMP domain HQ397_RS13980 PF02743 Cache domain HQ397_RS13990 PF03710 Glutamate-ammonia ligase adenylyltransferase HQ397_RS13990 PF08335 GlnD PII-uridylyltransferase HQ397_RS14010 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ397_RS14010 PF00326 Prolyl oligopeptidase family HQ397_RS14015 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS14020 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS14025 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS14030 PF00005 ABC transporter HQ397_RS14035 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS14040 PF00005 ABC transporter HQ397_RS14040 PF12704 MacB-like periplasmic core domain HQ397_RS14040 PF02687 FtsX-like permease family HQ397_RS14045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS14050 PF00072 Response regulator receiver domain HQ397_RS14050 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS14055 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ397_RS14055 PF00672 HAMP domain HQ397_RS14055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS14055 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS14060 PF09297 NADH pyrophosphatase zinc ribbon domain HQ397_RS14060 PF00293 NUDIX domain HQ397_RS14060 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ397_RS14095 PF03060 Nitronate monooxygenase HQ397_RS14105 PF00445 Ribonuclease T2 family HQ397_RS14120 PF03150 Di-haem cytochrome c peroxidase HQ397_RS14125 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HQ397_RS14145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS14145 PF03466 LysR substrate binding domain HQ397_RS14150 PF03783 Curli production assembly/transport component CsgG HQ397_RS14160 PF05643 Putative bacterial lipoprotein (DUF799) HQ397_RS14165 PF00271 Helicase conserved C-terminal domain HQ397_RS14165 PF00270 DEAD/DEAH box helicase HQ397_RS14175 PF00753 Metallo-beta-lactamase superfamily HQ397_RS14190 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ397_RS14195 PF03466 LysR substrate binding domain HQ397_RS14195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS14200 PF04480 Protein of unknown function (DUF559) HQ397_RS14210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ397_RS14215 PF00583 Acetyltransferase (GNAT) family HQ397_RS14230 PF00583 Acetyltransferase (GNAT) family HQ397_RS14245 PF00072 Response regulator receiver domain HQ397_RS14245 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS14260 PF07728 AAA domain (dynein-related subfamily) HQ397_RS14260 PF12592 Protein of unknown function (DUF3763) HQ397_RS14260 PF17868 AAA lid domain HQ397_RS14270 PF00583 Acetyltransferase (GNAT) family HQ397_RS14280 PF00501 AMP-binding enzyme HQ397_RS14290 PF04262 Glutamate-cysteine ligase HQ397_RS14295 PF05193 Peptidase M16 inactive domain HQ397_RS14295 PF00675 Insulinase (Peptidase family M16) HQ397_RS14300 PF09335 SNARE associated Golgi protein HQ397_RS14305 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ397_RS14305 PF14765 Polyketide synthase dehydratase HQ397_RS14305 PF00550 Phosphopantetheine attachment site HQ397_RS14305 PF08659 KR domain HQ397_RS14305 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ397_RS14305 PF16197 Ketoacyl-synthetase C-terminal extension HQ397_RS14305 PF08990 Erythronolide synthase docking HQ397_RS14305 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_RS14305 PF00698 Acyl transferase domain HQ397_RS14325 PF00970 Oxidoreductase FAD-binding domain HQ397_RS14325 PF00175 Oxidoreductase NAD-binding domain HQ397_RS14330 PF03948 Ribosomal protein L9, C-terminal domain HQ397_RS14330 PF01281 Ribosomal protein L9, N-terminal domain HQ397_RS14335 PF01084 Ribosomal protein S18 HQ397_RS14340 PF01250 Ribosomal protein S6 HQ397_RS14345 PF01566 Natural resistance-associated macrophage protein HQ397_RS14365 PF13673 Acetyltransferase (GNAT) domain HQ397_RS14375 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ397_RS14375 PF00588 SpoU rRNA Methylase family HQ397_RS14405 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS14410 PF02664 S-Ribosylhomocysteinase (LuxS) HQ397_RS14420 PF00543 Nitrogen regulatory protein P-II HQ397_RS14425 PF00795 Carbon-nitrogen hydrolase HQ397_RS14425 PF02540 NAD synthase HQ397_RS14460 PF05567 Neisseria PilC beta-propeller domain HQ397_RS14465 PF05567 Neisseria PilC beta-propeller domain HQ397_RS14490 PF02401 LytB protein HQ397_RS14495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ397_RS14500 PF01252 Signal peptidase (SPase) II HQ397_RS14505 PF08264 Anticodon-binding domain of tRNA HQ397_RS14505 PF00133 tRNA synthetases class I (I, L, M and V) HQ397_RS14505 PF06827 Zinc finger found in FPG and IleRS HQ397_RS14510 PF06574 FAD synthetase HQ397_RS14510 PF01687 Riboflavin kinase HQ397_RS14520 PF01649 Ribosomal protein S20 HQ397_RS14525 PF01022 Bacterial regulatory protein, arsR family HQ397_RS14530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS14530 PF03466 LysR substrate binding domain HQ397_RS14540 PF06965 Na+/H+ antiporter 1 HQ397_RS14545 PF00303 Thymidylate synthase HQ397_RS14550 PF01790 Prolipoprotein diacylglyceryl transferase HQ397_RS14555 PF01590 GAF domain HQ397_RS14555 PF05524 PEP-utilising enzyme, N-terminal HQ397_RS14555 PF00391 PEP-utilising enzyme, mobile domain HQ397_RS14555 PF02896 PEP-utilising enzyme, TIM barrel domain HQ397_RS14560 PF00293 NUDIX domain HQ397_RS14565 PF02976 DNA mismatch repair enzyme MutH HQ397_RS14575 PF01245 Ribosomal protein L19 HQ397_RS14580 PF01746 tRNA (Guanine-1)-methyltransferase HQ397_RS14585 PF01782 RimM N-terminal domain HQ397_RS14585 PF05239 PRC-barrel domain HQ397_RS14590 PF00886 Ribosomal protein S16 HQ397_RS14595 PF02978 Signal peptide binding domain HQ397_RS14595 PF02881 SRP54-type protein, helical bundle domain HQ397_RS14595 PF00448 SRP54-type protein, GTPase domain HQ397_RS14600 PF01578 Cytochrome C assembly protein HQ397_RS14605 PF00571 CBS domain HQ397_RS14605 PF01595 Cyclin M transmembrane N-terminal domain HQ397_RS14605 PF03471 Transporter associated domain HQ397_RS14610 PF02082 Transcriptional regulator HQ397_RS14615 PF00970 Oxidoreductase FAD-binding domain HQ397_RS14615 PF00042 Globin HQ397_RS14615 PF00175 Oxidoreductase NAD-binding domain HQ397_RS14620 PF08238 Sel1 repeat HQ397_RS14625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ397_RS14625 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ397_RS14630 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS14635 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS14640 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS14645 PF00005 ABC transporter HQ397_RS14650 PF02863 Arginine repressor, C-terminal domain HQ397_RS14650 PF01316 Arginine repressor, DNA binding domain HQ397_RS14655 PF04261 Dyp-type peroxidase family HQ397_RS14660 PF00005 ABC transporter HQ397_RS14660 PF08402 TOBE domain HQ397_RS14670 PF13416 Bacterial extracellular solute-binding protein HQ397_RS14675 PF00543 Nitrogen regulatory protein P-II HQ397_RS14680 PF00472 RF-1 domain HQ397_RS14685 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ397_RS14685 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ397_RS14690 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_RS14690 PF07670 Nucleoside recognition HQ397_RS14690 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_RS14695 PF03466 LysR substrate binding domain HQ397_RS14695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS14700 PF00255 Glutathione peroxidase HQ397_RS14710 PF02595 Glycerate kinase family HQ397_RS14715 PF02447 GntP family permease HQ397_RS14720 PF13556 PucR C-terminal helix-turn-helix domain HQ397_RS14720 PF17853 GGDEF-like domain HQ397_RS14720 PF05651 Putative sugar diacid recognition HQ397_RS14725 PF06062 Uncharacterised protein family (UPF0231) HQ397_RS14740 PF08447 PAS fold HQ397_RS14740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS14745 PF03372 Endonuclease/Exonuclease/phosphatase family HQ397_RS14760 PF00270 DEAD/DEAH box helicase HQ397_RS14760 PF00271 Helicase conserved C-terminal domain HQ397_RS14770 PF08534 Redoxin HQ397_RS14775 PF00403 Heavy-metal-associated domain HQ397_RS14795 PF02583 Metal-sensitive transcriptional repressor HQ397_RS14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS14805 PF03466 LysR substrate binding domain HQ397_RS14815 PF04055 Radical SAM superfamily HQ397_RS14820 PF11230 Protein of unknown function (DUF3029) HQ397_RS14870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS14870 PF00672 HAMP domain HQ397_RS14870 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS14885 PF00005 ABC transporter HQ397_RS14885 PF12857 TOBE-like domain HQ397_RS14890 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS14895 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS14910 PF13194 Domain of unknown function (DUF4010) HQ397_RS14915 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_RS14915 PF12464 Maltose acetyltransferase HQ397_RS14940 PF14698 Argininosuccinate lyase C-terminal HQ397_RS14940 PF00206 Lyase HQ397_RS14945 PF00764 Arginosuccinate synthase HQ397_RS14950 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ397_RS14950 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ397_RS14955 PF00696 Amino acid kinase family HQ397_RS14960 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ397_RS14960 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ397_RS14965 PF01546 Peptidase family M20/M25/M40 HQ397_RS14965 PF07687 Peptidase dimerisation domain HQ397_RS14970 PF00311 Phosphoenolpyruvate carboxylase HQ397_RS14980 PF00742 Homoserine dehydrogenase HQ397_RS14980 PF00696 Amino acid kinase family HQ397_RS14980 PF03447 Homoserine dehydrogenase, NAD binding domain HQ397_RS14985 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ397_RS14990 PF01340 Met Apo-repressor, MetJ HQ397_RS14995 PF12833 Helix-turn-helix domain HQ397_RS14995 PF06445 GyrI-like small molecule binding domain HQ397_RS15000 PF01588 Putative tRNA binding domain HQ397_RS15005 PF03222 Tryptophan/tyrosine permease family HQ397_RS15010 PF00459 Inositol monophosphatase family HQ397_RS15015 PF00293 NUDIX domain HQ397_RS15020 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS15025 PF01479 S4 domain HQ397_RS15025 PF00579 tRNA synthetases class I (W and Y) HQ397_RS15030 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS15035 PF01203 Type II secretion system (T2SS), protein N HQ397_RS15040 PF04612 Type II secretion system (T2SS), protein M HQ397_RS15045 PF12693 GspL periplasmic domain HQ397_RS15045 PF05134 Type II secretion system (T2SS), protein L HQ397_RS15050 PF03934 Type II secretion system (T2SS), protein K HQ397_RS15055 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS15055 PF11612 Type II secretion system (T2SS), protein J HQ397_RS15060 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS15060 PF02501 Type II secretion system (T2SS), protein I HQ397_RS15065 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS15065 PF12019 Type II transport protein GspH HQ397_RS15075 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS15075 PF08334 Type II secretion system (T2SS), protein G HQ397_RS15080 PF00482 Type II secretion system (T2SS), protein F HQ397_RS15085 PF00437 Type II/IV secretion system protein HQ397_RS15090 PF00263 Bacterial type II and III secretion system protein HQ397_RS15090 PF03958 Bacterial type II/III secretion system short domain HQ397_RS15095 PF11356 Type II secretion system protein C HQ397_RS15100 PF01479 S4 domain HQ397_RS15105 PF01430 Hsp33 protein HQ397_RS15110 PF01293 Phosphoenolpyruvate carboxykinase HQ397_RS15115 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS15120 PF01321 Creatinase/Prolidase N-terminal domain HQ397_RS15120 PF00557 Metallopeptidase family M24 HQ397_RS15125 PF11756 Nitrous oxide-stimulated promoter HQ397_RS15130 PF00583 Acetyltransferase (GNAT) family HQ397_RS15135 PF05433 Glycine zipper 2TM domain HQ397_RS15140 PF00149 Calcineurin-like phosphoesterase HQ397_RS15140 PF02872 5'-nucleotidase, C-terminal domain HQ397_RS15145 PF01810 LysE type translocator HQ397_RS15150 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS15150 PF03472 Autoinducer binding domain HQ397_RS15155 PF00765 Autoinducer synthase HQ397_RS15160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS15160 PF03466 LysR substrate binding domain HQ397_RS15165 PF17876 Cold shock domain HQ397_RS15165 PF08206 Ribonuclease B OB domain HQ397_RS15165 PF00773 RNB domain HQ397_RS15175 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS15185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_RS15185 PF02378 Phosphotransferase system, EIIC HQ397_RS15185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ397_RS15190 PF01232 Mannitol dehydrogenase Rossmann domain HQ397_RS15190 PF08125 Mannitol dehydrogenase C-terminal domain HQ397_RS15195 PF05068 Mannitol repressor HQ397_RS15200 PF00999 Sodium/hydrogen exchanger family HQ397_RS15200 PF03471 Transporter associated domain HQ397_RS15200 PF02080 TrkA-C domain HQ397_RS15220 PF01544 CorA-like Mg2+ transporter protein HQ397_RS15225 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HQ397_RS15240 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ397_RS15245 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_RS15245 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_RS15245 PF07670 Nucleoside recognition HQ397_RS15250 PF00271 Helicase conserved C-terminal domain HQ397_RS15250 PF03880 DbpA RNA binding domain HQ397_RS15250 PF00270 DEAD/DEAH box helicase HQ397_RS15280 PF01040 UbiA prenyltransferase family HQ397_RS15290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_RS15290 PF16582 Middle domain of thiamine pyrophosphate HQ397_RS15290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_RS15295 PF12697 Alpha/beta hydrolase family HQ397_RS15300 PF00378 Enoyl-CoA hydratase/isomerase HQ397_RS15305 PF13378 Enolase C-terminal domain-like HQ397_RS15310 PF00501 AMP-binding enzyme HQ397_RS15320 PF00419 Fimbrial protein HQ397_RS15330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HQ397_RS15330 PF02753 Pili assembly chaperone PapD, C-terminal domain HQ397_RS15335 PF13954 PapC N-terminal domain HQ397_RS15335 PF13953 PapC C-terminal domain HQ397_RS15335 PF00577 Outer membrane usher protein HQ397_RS15345 PF00419 Fimbrial protein HQ397_RS15355 PF08453 Peptidase family M9 N-terminal HQ397_RS15355 PF01752 Collagenase HQ397_RS15360 PF02698 DUF218 domain HQ397_RS15365 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ397_RS15365 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ397_RS15375 PF00561 alpha/beta hydrolase fold HQ397_RS15380 PF03280 Proteobacterial lipase chaperone protein HQ397_RS15395 PF12793 Sugar transport-related sRNA regulator N-term HQ397_RS15395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS15405 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ397_RS15415 PF00465 Iron-containing alcohol dehydrogenase HQ397_RS15430 PF03577 Peptidase family C69 HQ397_RS15435 PF00106 short chain dehydrogenase HQ397_RS15455 PF02308 MgtC family HQ397_RS15460 PF00128 Alpha amylase, catalytic domain HQ397_RS15460 PF16657 Maltogenic Amylase, C-terminal domain HQ397_RS15460 PF02903 Alpha amylase, N-terminal ig-like domain HQ397_RS15475 PF00884 Sulfatase HQ397_RS15480 PF01037 Lrp/AsnC ligand binding domain HQ397_RS15490 PF04204 Homoserine O-succinyltransferase HQ397_RS15495 PF00013 KH domain HQ397_RS15495 PF01966 HD domain HQ397_RS15495 PF12072 Domain of unknown function (DUF3552) HQ397_RS15500 PF00994 Probable molybdopterin binding domain HQ397_RS15500 PF02464 Competence-damaged protein HQ397_RS15510 PF00005 ABC transporter HQ397_RS15530 PF07722 Peptidase C26 HQ397_RS15550 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS15555 PF00589 Phage integrase family HQ397_RS15555 PF02899 Phage integrase, N-terminal SAM-like domain HQ397_RS15565 PF01678 Diaminopimelate epimerase HQ397_RS15570 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ397_RS15570 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ397_RS15580 PF01491 Frataxin-like domain HQ397_RS15585 PF02230 Phospholipase/Carboxylesterase HQ397_RS15590 PF01295 Adenylate cyclase, class-I HQ397_RS15590 PF12633 Adenylate cyclase NT domain HQ397_RS15595 PF03900 Porphobilinogen deaminase, C-terminal domain HQ397_RS15595 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ397_RS15600 PF02602 Uroporphyrinogen-III synthase HemD HQ397_RS15605 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ397_RS15615 PF03692 Putative zinc- or iron-chelating domain HQ397_RS15620 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ397_RS15635 PF00593 TonB dependent receptor HQ397_RS15635 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS15660 PF01638 HxlR-like helix-turn-helix HQ397_RS15665 PF08803 Putative mono-oxygenase ydhR HQ397_RS15680 PF06055 Exopolysaccharide synthesis, ExoD HQ397_RS15690 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS15710 PF13036 Peptidoglycan-synthase activator LpoB HQ397_RS15725 PF06968 Biotin and Thiamin Synthesis associated domain HQ397_RS15725 PF04055 Radical SAM superfamily HQ397_RS15730 PF05690 Thiazole biosynthesis protein ThiG HQ397_RS15740 PF00899 ThiF family HQ397_RS15745 PF02581 Thiamine monophosphate synthase HQ397_RS15750 PF13667 ThiC-associated domain HQ397_RS15750 PF01964 Radical SAM ThiC family HQ397_RS15755 PF03738 Glutathionylspermidine synthase preATP-grasp HQ397_RS15770 PF03994 Domain of Unknown Function (DUF350) HQ397_RS15790 PF00072 Response regulator receiver domain HQ397_RS15790 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS15795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS15800 PF05525 Branched-chain amino acid transport protein HQ397_RS15805 PF08443 RimK-like ATP-grasp domain HQ397_RS15805 PF18030 RimK PreATP-grasp domain HQ397_RS15810 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ397_RS15810 PF02574 Homocysteine S-methyltransferase HQ397_RS15810 PF00809 Pterin binding enzyme HQ397_RS15810 PF02310 B12 binding domain HQ397_RS15810 PF02607 B12 binding domain HQ397_RS15815 PF00999 Sodium/hydrogen exchanger family HQ397_RS15830 PF08668 HDOD domain HQ397_RS15840 PF04228 Putative neutral zinc metallopeptidase HQ397_RS15845 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ397_RS15860 PF13426 PAS domain HQ397_RS15860 PF08447 PAS fold HQ397_RS15860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS15865 PF01740 STAS domain HQ397_RS15865 PF08678 Rsbr N terminal HQ397_RS15870 PF13581 Histidine kinase-like ATPase domain HQ397_RS15875 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS15875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ397_RS15875 PF00072 Response regulator receiver domain HQ397_RS15875 PF01627 Hpt domain HQ397_RS15875 PF00672 HAMP domain HQ397_RS15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS15880 PF00072 Response regulator receiver domain HQ397_RS15890 PF07690 Major Facilitator Superfamily HQ397_RS15895 PF01914 MarC family integral membrane protein HQ397_RS15910 PF13580 SIS domain HQ397_RS15915 PF00367 phosphotransferase system, EIIB HQ397_RS15915 PF02378 Phosphotransferase system, EIIC HQ397_RS15935 PF01380 SIS domain HQ397_RS15935 PF01418 Helix-turn-helix domain, rpiR family HQ397_RS15940 PF01523 Putative modulator of DNA gyrase HQ397_RS15945 PF00795 Carbon-nitrogen hydrolase HQ397_RS15955 PF13502 AsmA-like C-terminal region HQ397_RS15955 PF13116 Protein of unknown function HQ397_RS15960 PF10150 Ribonuclease E/G family HQ397_RS15960 PF00575 S1 RNA binding domain HQ397_RS15965 PF02545 Maf-like protein HQ397_RS15970 PF04093 rod shape-determining protein MreD HQ397_RS15975 PF04085 rod shape-determining protein MreC HQ397_RS16005 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS16005 PF00114 Pilin (bacterial filament) HQ397_RS16015 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS16025 PF00482 Type II secretion system (T2SS), protein F HQ397_RS16030 PF00437 Type II/IV secretion system protein HQ397_RS16030 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ397_RS16040 PF09077 Mu B transposition protein, C terminal HQ397_RS16040 PF13401 AAA domain HQ397_RS16045 PF00263 Bacterial type II and III secretion system protein HQ397_RS16045 PF03958 Bacterial type II/III secretion system short domain HQ397_RS16080 PF12792 CSS motif domain associated with EAL HQ397_RS16080 PF00563 EAL domain HQ397_RS16085 PF01699 Sodium/calcium exchanger protein HQ397_RS16090 PF00221 Aromatic amino acid lyase HQ397_RS16095 PF01175 Urocanase Rossmann-like domain HQ397_RS16095 PF17392 Urocanase C-terminal domain HQ397_RS16095 PF17391 Urocanase N-terminal domain HQ397_RS16100 PF00491 Arginase family HQ397_RS16105 PF01979 Amidohydrolase family HQ397_RS16110 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS16110 PF07702 UTRA domain HQ397_RS16115 PF00484 Carbonic anhydrase HQ397_RS16120 PF00140 Sigma-70 factor, region 1.2 HQ397_RS16120 PF04542 Sigma-70 region 2 HQ397_RS16120 PF04545 Sigma-70, region 4 HQ397_RS16125 PF18075 FtsX extracellular domain HQ397_RS16130 PF00005 ABC transporter HQ397_RS16135 PF02881 SRP54-type protein, helical bundle domain HQ397_RS16135 PF00448 SRP54-type protein, GTPase domain HQ397_RS16150 PF07226 Protein of unknown function (DUF1422) HQ397_RS16155 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS16165 PF13091 PLD-like domain HQ397_RS16175 PF01464 Transglycosylase SLT domain HQ397_RS16185 PF02416 mttA/Hcf106 family HQ397_RS16190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS16190 PF03466 LysR substrate binding domain HQ397_RS16195 PF01914 MarC family integral membrane protein HQ397_RS16200 PF10678 Protein of unknown function (DUF2492) HQ397_RS16205 PF00375 Sodium:dicarboxylate symporter family HQ397_RS16215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS16215 PF03466 LysR substrate binding domain HQ397_RS16220 PF13533 Biotin-lipoyl like HQ397_RS16225 PF07690 Major Facilitator Superfamily HQ397_RS16230 PF07947 YhhN family HQ397_RS16250 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ397_RS16250 PF00326 Prolyl oligopeptidase family HQ397_RS16265 PF00106 short chain dehydrogenase HQ397_RS16270 PF03466 LysR substrate binding domain HQ397_RS16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS16275 PF02525 Flavodoxin-like fold HQ397_RS16280 PF00999 Sodium/hydrogen exchanger family HQ397_RS16280 PF02254 TrkA-N domain HQ397_RS16325 PF01196 Ribosomal protein L17 HQ397_RS16330 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ397_RS16330 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ397_RS16330 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ397_RS16335 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ397_RS16335 PF01479 S4 domain HQ397_RS16340 PF00411 Ribosomal protein S11 HQ397_RS16345 PF00416 Ribosomal protein S13/S18 HQ397_RS16350 PF00444 Ribosomal protein L36 HQ397_RS16355 PF00344 SecY translocase HQ397_RS16360 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ397_RS16365 PF00327 Ribosomal protein L30p/L7e HQ397_RS16370 PF00333 Ribosomal protein S5, N-terminal domain HQ397_RS16370 PF03719 Ribosomal protein S5, C-terminal domain HQ397_RS16375 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ397_RS16380 PF00347 Ribosomal protein L6 HQ397_RS16385 PF00410 Ribosomal protein S8 HQ397_RS16390 PF00253 Ribosomal protein S14p/S29e HQ397_RS16395 PF00281 Ribosomal protein L5 HQ397_RS16395 PF00673 ribosomal L5P family C-terminus HQ397_RS16400 PF00467 KOW motif HQ397_RS16400 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ397_RS16405 PF00238 Ribosomal protein L14p/L23e HQ397_RS16410 PF00366 Ribosomal protein S17 HQ397_RS16415 PF00831 Ribosomal L29 protein HQ397_RS16420 PF00252 Ribosomal protein L16p/L10e HQ397_RS16425 PF07650 KH domain HQ397_RS16425 PF00189 Ribosomal protein S3, C-terminal domain HQ397_RS16430 PF00237 Ribosomal protein L22p/L17e HQ397_RS16435 PF00203 Ribosomal protein S19 HQ397_RS16440 PF00181 Ribosomal Proteins L2, RNA binding domain HQ397_RS16440 PF03947 Ribosomal Proteins L2, C-terminal domain HQ397_RS16445 PF00276 Ribosomal protein L23 HQ397_RS16450 PF00573 Ribosomal protein L4/L1 family HQ397_RS16455 PF00297 Ribosomal protein L3 HQ397_RS16460 PF00338 Ribosomal protein S10p/S20e HQ397_RS16470 PF00672 HAMP domain HQ397_RS16470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS16470 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS16475 PF00072 Response regulator receiver domain HQ397_RS16475 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS16480 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ397_RS16480 PF03449 Transcription elongation factor, N-terminal HQ397_RS16485 PF09371 Tex-like protein N-terminal domain HQ397_RS16485 PF17674 HHH domain HQ397_RS16485 PF00575 S1 RNA binding domain HQ397_RS16485 PF16921 Tex protein YqgF-like domain HQ397_RS16505 PF00561 alpha/beta hydrolase fold HQ397_RS16510 PF00156 Phosphoribosyl transferase domain HQ397_RS16515 PF01521 Iron-sulphur cluster biosynthesis HQ397_RS16515 PF01106 NifU-like domain HQ397_RS16520 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ397_RS16520 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ397_RS16525 PF02556 Preprotein translocase subunit SecB HQ397_RS16530 PF00581 Rhodanese-like domain HQ397_RS16535 PF01676 Metalloenzyme superfamily HQ397_RS16535 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ397_RS16540 PF01551 Peptidase family M23 HQ397_RS16550 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS16550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_RS16555 PF01081 KDPG and KHG aldolase HQ397_RS16560 PF00920 Dehydratase family HQ397_RS16565 PF01202 Shikimate kinase HQ397_RS16570 PF02447 GntP family permease HQ397_RS16575 PF13091 PLD-like domain HQ397_RS16580 PF00270 DEAD/DEAH box helicase HQ397_RS16580 PF00271 Helicase conserved C-terminal domain HQ397_RS16580 PF17191 RecG wedge domain HQ397_RS16590 PF00583 Acetyltransferase (GNAT) family HQ397_RS16590 PF09500 Putative thioesterase (yiiD_Cterm) HQ397_RS16605 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ397_RS16610 PF03631 Virulence factor BrkB HQ397_RS16615 PF03144 Elongation factor Tu domain 2 HQ397_RS16615 PF00009 Elongation factor Tu GTP binding domain HQ397_RS16615 PF00679 Elongation factor G C-terminus HQ397_RS16620 PF03951 Glutamine synthetase, beta-Grasp domain HQ397_RS16620 PF00120 Glutamine synthetase, catalytic domain HQ397_RS16630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS16630 PF00989 PAS fold HQ397_RS16630 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS16635 PF02954 Bacterial regulatory protein, Fis family HQ397_RS16635 PF00072 Response regulator receiver domain HQ397_RS16635 PF00158 Sigma-54 interaction domain HQ397_RS16640 PF00962 Adenosine/AMP deaminase HQ397_RS16645 PF04055 Radical SAM superfamily HQ397_RS16645 PF06969 HemN C-terminal domain HQ397_RS16650 PF10675 Protein of unknown function (DUF2489) HQ397_RS16655 PF04220 Der GTPase activator (YihI) HQ397_RS16660 PF00034 Cytochrome c HQ397_RS16665 PF01926 50S ribosome-binding GTPase HQ397_RS16670 PF07369 Protein of unknown function (DUF1488) HQ397_RS16675 PF08501 Shikimate dehydrogenase substrate binding domain HQ397_RS16675 PF01488 Shikimate / quinate 5-dehydrogenase HQ397_RS16675 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HQ397_RS16680 PF01218 Coproporphyrinogen III oxidase HQ397_RS16685 PF01300 Telomere recombination HQ397_RS16690 PF00731 AIR carboxylase HQ397_RS16695 PF01396 Topoisomerase DNA binding C4 zinc finger HQ397_RS16700 PF04361 Protein of unknown function (DUF494) HQ397_RS16705 PF02481 DNA recombination-mediator protein A HQ397_RS16705 PF17782 DprA winged helix domain HQ397_RS16715 PF01327 Polypeptide deformylase HQ397_RS16720 PF00551 Formyl transferase HQ397_RS16720 PF02911 Formyl transferase, C-terminal domain HQ397_RS16725 PF01189 16S rRNA methyltransferase RsmB/F HQ397_RS16725 PF01029 NusB family HQ397_RS16730 PF02080 TrkA-C domain HQ397_RS16730 PF02254 TrkA-N domain HQ397_RS16735 PF02386 Cation transport protein HQ397_RS16740 PF02646 RmuC family HQ397_RS16755 PF02082 Transcriptional regulator HQ397_RS16760 PF00294 pfkB family carbohydrate kinase HQ397_RS16765 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ397_RS16765 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ397_RS16770 PF00117 Glutamine amidotransferase class-I HQ397_RS16770 PF00958 GMP synthase C terminal domain HQ397_RS16770 PF02540 NAD synthase HQ397_RS16775 PF00171 Aldehyde dehydrogenase family HQ397_RS16780 PF00202 Aminotransferase class-III HQ397_RS16785 PF07883 Cupin domain HQ397_RS16785 PF01381 Helix-turn-helix HQ397_RS16790 PF00171 Aldehyde dehydrogenase family HQ397_RS16800 PF00892 EamA-like transporter family HQ397_RS16805 PF12833 Helix-turn-helix domain HQ397_RS16810 PF01810 LysE type translocator HQ397_RS16815 PF00689 Cation transporting ATPase, C-terminus HQ397_RS16815 PF00690 Cation transporter/ATPase, N-terminus HQ397_RS16820 PF04143 Sulphur transport HQ397_RS16830 PF01810 LysE type translocator HQ397_RS16840 PF06206 CpeT/CpcT family (DUF1001) HQ397_RS16865 PF14001 YdfZ protein HQ397_RS16875 PF03466 LysR substrate binding domain HQ397_RS16875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS16895 PF00580 UvrD/REP helicase N-terminal domain HQ397_RS16895 PF13361 UvrD-like helicase C-terminal domain HQ397_RS16900 PF02608 ABC transporter substrate-binding protein PnrA-like HQ397_RS16905 PF00005 ABC transporter HQ397_RS16910 PF02653 Branched-chain amino acid transport system / permease component HQ397_RS16915 PF02653 Branched-chain amino acid transport system / permease component HQ397_RS16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS16920 PF03466 LysR substrate binding domain HQ397_RS16925 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_RS16925 PF00107 Zinc-binding dehydrogenase HQ397_RS16930 PF00756 Putative esterase HQ397_RS16940 PF03781 Sulfatase-modifying factor enzyme 1 HQ397_RS16940 PF12867 DinB superfamily HQ397_RS16945 PF13593 SBF-like CPA transporter family (DUF4137) HQ397_RS16950 PF13520 Amino acid permease HQ397_RS16955 PF01588 Putative tRNA binding domain HQ397_RS16960 PF13520 Amino acid permease HQ397_RS16965 PF04074 YhcH/YjgK/YiaL HQ397_RS16970 PF16353 Domain of unknown function(DUF4981) HQ397_RS16970 PF00703 Glycosyl hydrolases family 2 HQ397_RS16970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ397_RS16970 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ397_RS16970 PF02929 Beta galactosidase small chain HQ397_RS16975 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS17020 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ397_RS17020 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ397_RS17020 PF00476 DNA polymerase family A HQ397_RS17020 PF01612 3'-5' exonuclease HQ397_RS17030 PF06005 Cell division protein ZapB HQ397_RS17040 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_RS17040 PF06426 Serine acetyltransferase, N-terminal HQ397_RS17045 PF01545 Cation efflux family HQ397_RS17045 PF16916 Dimerisation domain of Zinc Transporter HQ397_RS17050 PF00072 Response regulator receiver domain HQ397_RS17050 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS17055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS17055 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS17055 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ397_RS17055 PF00672 HAMP domain HQ397_RS17060 PF00588 SpoU rRNA Methylase family HQ397_RS17065 PF01554 MatE HQ397_RS17070 PF02630 SCO1/SenC HQ397_RS17080 PF01726 LexA DNA binding domain HQ397_RS17080 PF00717 Peptidase S24-like HQ397_RS17085 PF01553 Acyltransferase HQ397_RS17090 PF01040 UbiA prenyltransferase family HQ397_RS17095 PF04345 Chorismate lyase HQ397_RS17100 PF03748 Flagellar basal body-associated protein FliL HQ397_RS17115 PF00107 Zinc-binding dehydrogenase HQ397_RS17115 PF08240 Alcohol dehydrogenase GroES-like domain HQ397_RS17120 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS17120 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ397_RS17125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_RS17135 PF03611 PTS system sugar-specific permease component HQ397_RS17145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ397_RS17150 PF00535 Glycosyl transferase family 2 HQ397_RS17155 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ397_RS17160 PF01467 Cytidylyltransferase-like HQ397_RS17165 PF04393 Protein of unknown function (DUF535) HQ397_RS17170 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ397_RS17170 PF06827 Zinc finger found in FPG and IleRS HQ397_RS17170 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ397_RS17180 PF00471 Ribosomal protein L33 HQ397_RS17185 PF00830 Ribosomal L28 family HQ397_RS17190 PF04002 RadC-like JAB domain HQ397_RS17195 PF04127 DNA / pantothenate metabolism flavoprotein HQ397_RS17195 PF02441 Flavoprotein HQ397_RS17200 PF00692 dUTPase HQ397_RS17205 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS17210 PF00924 Mechanosensitive ion channel HQ397_RS17210 PF05552 Conserved TM helix HQ397_RS17220 PF00342 Phosphoglucose isomerase HQ397_RS17225 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ397_RS17225 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ397_RS17230 PF03466 LysR substrate binding domain HQ397_RS17230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS17245 PF00583 Acetyltransferase (GNAT) family HQ397_RS17245 PF13380 CoA binding domain HQ397_RS17245 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ397_RS17275 PF01177 Asp/Glu/Hydantoin racemase HQ397_RS17280 PF00593 TonB dependent receptor HQ397_RS17280 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS17285 PF03466 LysR substrate binding domain HQ397_RS17285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS17290 PF03466 LysR substrate binding domain HQ397_RS17290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS17305 PF00731 AIR carboxylase HQ397_RS17310 PF02222 ATP-grasp domain HQ397_RS17310 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HQ397_RS17315 PF07690 Major Facilitator Superfamily HQ397_RS17320 PF00072 Response regulator receiver domain HQ397_RS17320 PF04397 LytTr DNA-binding domain HQ397_RS17325 PF07694 5TMR of 5TMR-LYT HQ397_RS17325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS17325 PF06580 Histidine kinase HQ397_RS17335 PF00072 Response regulator receiver domain HQ397_RS17335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS17335 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS17335 PF01627 Hpt domain HQ397_RS17335 PF00989 PAS fold HQ397_RS17335 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS17340 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS17340 PF00072 Response regulator receiver domain HQ397_RS17345 PF16449 Fimbrillin MatB HQ397_RS17350 PF18649 EcpB C-terminal domain HQ397_RS17355 PF16967 E-set like domain HQ397_RS17355 PF15976 CS1-pili formation C-terminal HQ397_RS17370 PF01810 LysE type translocator HQ397_RS17375 PF07690 Major Facilitator Superfamily HQ397_RS17385 PF00210 Ferritin-like domain HQ397_RS17390 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS17395 PF07055 Enoyl reductase FAD binding domain HQ397_RS17395 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ397_RS17395 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ397_RS17400 PF00582 Universal stress protein family HQ397_RS17405 PF00579 tRNA synthetases class I (W and Y) HQ397_RS17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS17410 PF03466 LysR substrate binding domain HQ397_RS17430 PF00892 EamA-like transporter family HQ397_RS17445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ397_RS17450 PF00625 Guanylate kinase HQ397_RS17455 PF01192 RNA polymerase Rpb6 HQ397_RS17460 PF13291 ACT domain HQ397_RS17460 PF02824 TGS domain HQ397_RS17460 PF04607 Region found in RelA / SpoT proteins HQ397_RS17465 PF12105 SpoU, rRNA methylase, C-terminal HQ397_RS17465 PF00588 SpoU rRNA Methylase family HQ397_RS17470 PF12146 Serine aminopeptidase, S33 HQ397_RS17505 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS17510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS17520 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS17520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS17520 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS17525 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS17525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_RS17530 PF03814 Potassium-transporting ATPase A subunit HQ397_RS17540 PF02669 K+-transporting ATPase, c chain HQ397_RS17545 PF13493 Domain of unknown function (DUF4118) HQ397_RS17545 PF13492 GAF domain HQ397_RS17545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS17545 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS17545 PF02702 Osmosensitive K+ channel His kinase sensor domain HQ397_RS17550 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS17550 PF00072 Response regulator receiver domain HQ397_RS17555 PF07690 Major Facilitator Superfamily HQ397_RS17570 PF00155 Aminotransferase class I and II HQ397_RS17575 PF00011 Hsp20/alpha crystallin family HQ397_RS17580 PF00011 Hsp20/alpha crystallin family HQ397_RS17585 PF08279 HTH domain HQ397_RS17585 PF13280 WYL domain HQ397_RS17595 PF18053 DNA gyrase B subunit insert domain HQ397_RS17595 PF00204 DNA gyrase B HQ397_RS17595 PF00986 DNA gyrase B subunit, carboxyl terminus HQ397_RS17595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS17595 PF01751 Toprim domain HQ397_RS17600 PF02463 RecF/RecN/SMC N terminal domain HQ397_RS17605 PF02767 DNA polymerase III beta subunit, central domain HQ397_RS17605 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ397_RS17605 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ397_RS17610 PF00308 Bacterial dnaA protein HQ397_RS17610 PF08299 Bacterial dnaA protein helix-turn-helix HQ397_RS17610 PF11638 DnaA N-terminal domain HQ397_RS17615 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ397_RS17620 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS17625 PF00005 ABC transporter HQ397_RS17630 PF00468 Ribosomal protein L34 HQ397_RS17635 PF00825 Ribonuclease P HQ397_RS17640 PF01809 Putative membrane protein insertion efficiency factor HQ397_RS17645 PF14849 YidC periplasmic domain HQ397_RS17645 PF02096 60Kd inner membrane protein HQ397_RS17650 PF01926 50S ribosome-binding GTPase HQ397_RS17650 PF12631 MnmE helical domain HQ397_RS17650 PF10396 GTP-binding protein TrmE N-terminus HQ397_RS17665 PF00005 ABC transporter HQ397_RS17675 PF00593 TonB dependent receptor HQ397_RS17675 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS17680 PF00258 Flavodoxin HQ397_RS17685 PF01134 Glucose inhibited division protein A HQ397_RS17685 PF13932 GidA associated domain HQ397_RS17690 PF02527 rRNA small subunit methyltransferase G HQ397_RS17695 PF13614 AAA domain HQ397_RS17700 PF17762 HTH domain found in ParB protein HQ397_RS17700 PF02195 ParB-like nuclease domain HQ397_RS17710 PF00119 ATP synthase A chain HQ397_RS17715 PF00137 ATP synthase subunit C HQ397_RS17720 PF00430 ATP synthase B/B' CF(0) HQ397_RS17725 PF00213 ATP synthase delta (OSCP) subunit HQ397_RS17730 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ397_RS17730 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ397_RS17730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_RS17735 PF00231 ATP synthase HQ397_RS17740 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_RS17740 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ397_RS17745 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ397_RS17745 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ397_RS17750 PF12804 MobA-like NTP transferase domain HQ397_RS17750 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_RS17750 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_RS17755 PF06123 Inner membrane protein CreD HQ397_RS17760 PF00905 Penicillin binding protein transpeptidase domain HQ397_RS17765 PF00672 HAMP domain HQ397_RS17765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS17765 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS17770 PF00072 Response regulator receiver domain HQ397_RS17770 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS17775 PF00455 DeoR C terminal sensor domain HQ397_RS17775 PF08220 DeoR-like helix-turn-helix domain HQ397_RS17780 PF01380 SIS domain HQ397_RS17785 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS17785 PF03472 Autoinducer binding domain HQ397_RS17795 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS17800 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS17805 PF02472 Biopolymer transport protein ExbD/TolR HQ397_RS17810 PF03544 Gram-negative bacterial TonB protein C-terminal HQ397_RS17850 PF07969 Amidohydrolase family HQ397_RS17860 PF01209 ubiE/COQ5 methyltransferase family HQ397_RS17865 PF02036 SCP-2 sterol transfer family HQ397_RS17870 PF03109 ABC1 family HQ397_RS17875 PF02416 mttA/Hcf106 family HQ397_RS17880 PF02416 mttA/Hcf106 family HQ397_RS17885 PF00902 Sec-independent protein translocase protein (TatC) HQ397_RS17890 PF01026 TatD related DNase HQ397_RS17895 PF00490 Delta-aminolevulinic acid dehydratase HQ397_RS17905 PF00563 EAL domain HQ397_RS17905 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS17905 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS17910 PF04445 Putative SAM-dependent methyltransferase HQ397_RS17925 PF02541 Ppx/GppA phosphatase family HQ397_RS17930 PF00270 DEAD/DEAH box helicase HQ397_RS17930 PF00271 Helicase conserved C-terminal domain HQ397_RS17935 PF00085 Thioredoxin HQ397_RS17940 PF07497 Rho termination factor, RNA-binding domain HQ397_RS17940 PF07498 Rho termination factor, N-terminal domain HQ397_RS17940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_RS17950 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ397_RS17955 PF00175 Oxidoreductase NAD-binding domain HQ397_RS17960 PF04380 Membrane fusogenic activity HQ397_RS17965 PF12262 Bacterial virulence factor lipase N-terminal HQ397_RS17970 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HQ397_RS17970 PF01694 Rhomboid family HQ397_RS17975 PF00581 Rhodanese-like domain HQ397_RS17995 PF00005 ABC transporter HQ397_RS17995 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ397_RS18000 PF02653 Branched-chain amino acid transport system / permease component HQ397_RS18000 PF11862 Domain of unknown function (DUF3382) HQ397_RS18005 PF02653 Branched-chain amino acid transport system / permease component HQ397_RS18010 PF13458 Periplasmic binding protein HQ397_RS18015 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS18020 PF02056 Family 4 glycosyl hydrolase HQ397_RS18020 PF11975 Family 4 glycosyl hydrolase C-terminal domain HQ397_RS18025 PF00367 phosphotransferase system, EIIB HQ397_RS18025 PF02378 Phosphotransferase system, EIIC HQ397_RS18030 PF07702 UTRA domain HQ397_RS18030 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS18035 PF00158 Sigma-54 interaction domain HQ397_RS18035 PF01590 GAF domain HQ397_RS18040 PF00258 Flavodoxin HQ397_RS18040 PF00753 Metallo-beta-lactamase superfamily HQ397_RS18040 PF00301 Rubredoxin HQ397_RS18045 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS18045 PF18113 Rubredoxin binding C-terminal domain HQ397_RS18055 PF12801 4Fe-4S binding domain HQ397_RS18060 PF03222 Tryptophan/tyrosine permease family HQ397_RS18070 PF05932 Tir chaperone protein (CesT) family HQ397_RS18075 PF03545 Yersinia virulence determinant (YopE) HQ397_RS18075 PF03496 ADP-ribosyltransferase exoenzyme HQ397_RS18095 PF14306 PUA-like domain HQ397_RS18095 PF01747 ATP-sulfurylase HQ397_RS18100 PF11008 Protein of unknown function (DUF2846) HQ397_RS18105 PF05746 DALR anticodon binding domain HQ397_RS18105 PF02092 Glycyl-tRNA synthetase beta subunit HQ397_RS18110 PF02091 Glycyl-tRNA synthetase alpha subunit HQ397_RS18115 PF03352 Methyladenine glycosylase HQ397_RS18120 PF00857 Isochorismatase family HQ397_RS18125 PF13488 Glycine zipper HQ397_RS18125 PF00691 OmpA family HQ397_RS18135 PF01042 Endoribonuclease L-PSP HQ397_RS18140 PF01206 Sulfurtransferase TusA HQ397_RS18150 PF01547 Bacterial extracellular solute-binding protein HQ397_RS18155 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS18155 PF00672 HAMP domain HQ397_RS18155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS18160 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS18160 PF00072 Response regulator receiver domain HQ397_RS18165 PF02803 Thiolase, C-terminal domain HQ397_RS18165 PF00108 Thiolase, N-terminal domain HQ397_RS18170 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ397_RS18170 PF00378 Enoyl-CoA hydratase/isomerase HQ397_RS18170 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ397_RS18175 PF00501 AMP-binding enzyme HQ397_RS18175 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS18180 PF00557 Metallopeptidase family M24 HQ397_RS18185 PF09186 Domain of unknown function (DUF1949) HQ397_RS18185 PF01205 Uncharacterized protein family UPF0029 HQ397_RS18190 PF02386 Cation transport protein HQ397_RS18195 PF12724 Flavodoxin domain HQ397_RS18230 PF00899 ThiF family HQ397_RS18235 PF02657 Fe-S metabolism associated domain HQ397_RS18240 PF00266 Aminotransferase class-V HQ397_RS18245 PF13361 UvrD-like helicase C-terminal domain HQ397_RS18245 PF00580 UvrD/REP helicase N-terminal domain HQ397_RS18250 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS18250 PF00563 EAL domain HQ397_RS18250 PF03707 Bacterial signalling protein N terminal repeat HQ397_RS18255 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ397_RS18265 PF00155 Aminotransferase class I and II HQ397_RS18270 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS18270 PF08360 QacR-like protein, C-terminal region HQ397_RS18275 PF01370 NAD dependent epimerase/dehydratase family HQ397_RS18290 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ397_RS18310 PF03755 YicC-like family, N-terminal region HQ397_RS18310 PF08340 Domain of unknown function (DUF1732) HQ397_RS18315 PF01138 3' exoribonuclease family, domain 1 HQ397_RS18315 PF03725 3' exoribonuclease family, domain 2 HQ397_RS18320 PF00156 Phosphoribosyl transferase domain HQ397_RS18325 PF00403 Heavy-metal-associated domain HQ397_RS18330 PF09278 MerR, DNA binding HQ397_RS18330 PF00376 MerR family regulatory protein HQ397_RS18335 PF00563 EAL domain HQ397_RS18335 PF01590 GAF domain HQ397_RS18335 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS18335 PF00360 Phytochrome region HQ397_RS18340 PF06288 Protein of unknown function (DUF1040) HQ397_RS18345 PF13746 4Fe-4S dicluster domain HQ397_RS18345 PF12801 4Fe-4S binding domain HQ397_RS18345 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ397_RS18350 PF01636 Phosphotransferase enzyme family HQ397_RS18355 PF01323 DSBA-like thioredoxin domain HQ397_RS18360 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HQ397_RS18360 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HQ397_RS18365 PF00857 Isochorismatase family HQ397_RS18375 PF04463 Protein of unknown function (DUF523) HQ397_RS18380 PF01553 Acyltransferase HQ397_RS18390 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ397_RS18390 PF01078 Magnesium chelatase, subunit ChlI HQ397_RS18395 PF00205 Thiamine pyrophosphate enzyme, central domain HQ397_RS18395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_RS18395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_RS18405 PF01063 Amino-transferase class IV HQ397_RS18410 PF00920 Dehydratase family HQ397_RS18415 PF00291 Pyridoxal-phosphate dependent enzyme HQ397_RS18415 PF00585 C-terminal regulatory domain of Threonine dehydratase HQ397_RS18420 PF01389 OmpA-like transmembrane domain HQ397_RS18420 PF00691 OmpA family HQ397_RS18430 PF00270 DEAD/DEAH box helicase HQ397_RS18430 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ397_RS18430 PF18074 Primosomal protein N C-terminal domain HQ397_RS18430 PF17764 3′ DNA-binding domain (3′BD) HQ397_RS18430 PF00271 Helicase conserved C-terminal domain HQ397_RS18435 PF01197 Ribosomal protein L31 HQ397_RS18440 PF11066 Protein of unknown function (DUF2867) HQ397_RS18440 PF13460 NAD(P)H-binding HQ397_RS18445 PF00390 Malic enzyme, N-terminal domain HQ397_RS18445 PF03949 Malic enzyme, NAD binding domain HQ397_RS18455 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS18455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS18455 PF00672 HAMP domain HQ397_RS18460 PF00072 Response regulator receiver domain HQ397_RS18460 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS18465 PF05958 tRNA (Uracil-5-)-methyltransferase HQ397_RS18500 PF09940 Domain of unknown function (DUF2172) HQ397_RS18500 PF16254 Domain of unknown function (DUF4910) HQ397_RS18500 PF16221 winged helix-turn-helix HQ397_RS18520 PF03102 NeuB family HQ397_RS18520 PF08666 SAF domain HQ397_RS18530 PF02348 Cytidylyltransferase HQ397_RS18550 PF00501 AMP-binding enzyme HQ397_RS18550 PF13193 AMP-binding enzyme C-terminal domain HQ397_RS18565 PF00535 Glycosyl transferase family 2 HQ397_RS18570 PF03275 UDP-galactopyranose mutase HQ397_RS18575 PF00534 Glycosyl transferases group 1 HQ397_RS18575 PF13439 Glycosyltransferase Family 4 HQ397_RS18615 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ397_RS18615 PF00391 PEP-utilising enzyme, mobile domain HQ397_RS18620 PF00117 Glutamine amidotransferase class-I HQ397_RS18620 PF00958 GMP synthase C terminal domain HQ397_RS18620 PF02540 NAD synthase HQ397_RS18625 PF12804 MobA-like NTP transferase domain HQ397_RS18630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ397_RS18635 PF02719 Polysaccharide biosynthesis protein HQ397_RS18640 PF02903 Alpha amylase, N-terminal ig-like domain HQ397_RS18640 PF00128 Alpha amylase, catalytic domain HQ397_RS18655 PF00012 Hsp70 protein HQ397_RS18660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ397_RS18660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_RS18665 PF05981 CreA protein HQ397_RS18680 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ397_RS18685 PF00120 Glutamine synthetase, catalytic domain HQ397_RS18690 PF00202 Aminotransferase class-III HQ397_RS18695 PF13416 Bacterial extracellular solute-binding protein HQ397_RS18705 PF00005 ABC transporter HQ397_RS18705 PF08402 TOBE domain HQ397_RS18710 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS18715 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS18720 PF03475 3-alpha domain HQ397_RS18720 PF03473 MOSC domain HQ397_RS18735 PF03061 Thioesterase superfamily HQ397_RS18740 PF00570 HRDC domain HQ397_RS18740 PF16124 RecQ zinc-binding HQ397_RS18740 PF09382 RQC domain HQ397_RS18740 PF00271 Helicase conserved C-terminal domain HQ397_RS18740 PF00270 DEAD/DEAH box helicase HQ397_RS18745 PF00034 Cytochrome c HQ397_RS18750 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ397_RS18760 PF02592 Putative vitamin uptake transporter HQ397_RS18765 PF03737 Aldolase/RraA HQ397_RS18770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS18770 PF00672 HAMP domain HQ397_RS18780 PF14824 Sirohaem biosynthesis protein central HQ397_RS18780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ397_RS18780 PF10414 Sirohaem synthase dimerisation region HQ397_RS18785 PF01226 Formate/nitrite transporter HQ397_RS18790 PF13806 Rieske-like [2Fe-2S] domain HQ397_RS18795 PF04324 BFD-like [2Fe-2S] binding domain HQ397_RS18795 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ397_RS18795 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ397_RS18795 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS18795 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ397_RS18800 PF03466 LysR substrate binding domain HQ397_RS18800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS18805 PF07690 Major Facilitator Superfamily HQ397_RS18815 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_RS18815 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_RS18815 PF07724 AAA domain (Cdc48 subfamily) HQ397_RS18820 PF00227 Proteasome subunit HQ397_RS18830 PF03485 Arginyl tRNA synthetase N terminal domain HQ397_RS18830 PF00750 tRNA synthetases class I (R) HQ397_RS18830 PF05746 DALR anticodon binding domain HQ397_RS18840 PF04545 Sigma-70, region 4 HQ397_RS18840 PF04542 Sigma-70 region 2 HQ397_RS18845 PF12973 ChrR Cupin-like domain HQ397_RS18850 PF02673 Bacitracin resistance protein BacA HQ397_RS18855 PF00248 Aldo/keto reductase family HQ397_RS18860 PF01263 Aldose 1-epimerase HQ397_RS18865 PF00288 GHMP kinases N terminal domain HQ397_RS18865 PF10509 Galactokinase galactose-binding signature HQ397_RS18865 PF08544 GHMP kinases C terminal HQ397_RS18870 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ397_RS18870 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ397_RS18875 PF16363 GDP-mannose 4,6 dehydratase HQ397_RS18880 PF00356 Bacterial regulatory proteins, lacI family HQ397_RS18885 PF02929 Beta galactosidase small chain HQ397_RS18885 PF16353 Domain of unknown function(DUF4981) HQ397_RS18885 PF00703 Glycosyl hydrolases family 2 HQ397_RS18885 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ397_RS18885 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ397_RS18890 PF13407 Periplasmic binding protein domain HQ397_RS18895 PF00005 ABC transporter HQ397_RS18900 PF02653 Branched-chain amino acid transport system / permease component HQ397_RS18905 PF02743 Cache domain HQ397_RS18905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS18905 PF00672 HAMP domain HQ397_RS18930 PF00696 Amino acid kinase family HQ397_RS18935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ397_RS18935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ397_RS18940 PF03606 C4-dicarboxylate anaerobic carrier HQ397_RS18950 PF01316 Arginine repressor, DNA binding domain HQ397_RS18950 PF02863 Arginine repressor, C-terminal domain HQ397_RS18955 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ397_RS18955 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ397_RS18960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ397_RS18960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ397_RS18980 PF02666 Phosphatidylserine decarboxylase HQ397_RS18985 PF00561 alpha/beta hydrolase fold HQ397_RS18995 PF03466 LysR substrate binding domain HQ397_RS18995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS19000 PF02743 Cache domain HQ397_RS19000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS19000 PF00672 HAMP domain HQ397_RS19005 PF08212 Lipocalin-like domain HQ397_RS19010 PF06719 AraC-type transcriptional regulator N-terminus HQ397_RS19010 PF12833 Helix-turn-helix domain HQ397_RS19015 PF00465 Iron-containing alcohol dehydrogenase HQ397_RS19020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ397_RS19020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ397_RS19020 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ397_RS19025 PF02233 NAD(P) transhydrogenase beta subunit HQ397_RS19035 PF03313 Serine dehydratase alpha chain HQ397_RS19040 PF00375 Sodium:dicarboxylate symporter family HQ397_RS19045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_RS19045 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS19050 PF13525 Outer membrane lipoprotein HQ397_RS19055 PF01479 S4 domain HQ397_RS19055 PF00849 RNA pseudouridylate synthase HQ397_RS19060 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ397_RS19065 PF00004 ATPase family associated with various cellular activities (AAA) HQ397_RS19065 PF17871 AAA lid domain HQ397_RS19065 PF02861 Clp amino terminal domain, pathogenicity island component HQ397_RS19065 PF10431 C-terminal, D2-small domain, of ClpB protein HQ397_RS19065 PF07724 AAA domain (Cdc48 subfamily) HQ397_RS19075 PF03590 Aspartate-ammonia ligase HQ397_RS19080 PF01037 Lrp/AsnC ligand binding domain HQ397_RS19090 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ397_RS19095 PF00478 IMP dehydrogenase / GMP reductase domain HQ397_RS19095 PF00571 CBS domain HQ397_RS19115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS19115 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS19125 PF00158 Sigma-54 interaction domain HQ397_RS19125 PF00072 Response regulator receiver domain HQ397_RS19130 PF06496 Protein of unknown function (DUF1097) HQ397_RS19140 PF01794 Ferric reductase like transmembrane component HQ397_RS19155 PF00072 Response regulator receiver domain HQ397_RS19155 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS19170 PF00384 Molybdopterin oxidoreductase HQ397_RS19170 PF18364 Molybdopterin oxidoreductase N-terminal domain HQ397_RS19170 PF01568 Molydopterin dinucleotide binding domain HQ397_RS19175 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ397_RS19180 PF01131 DNA topoisomerase HQ397_RS19180 PF01751 Toprim domain HQ397_RS19195 PF12852 Cupin HQ397_RS19195 PF12833 Helix-turn-helix domain HQ397_RS19200 PF02386 Cation transport protein HQ397_RS19205 PF02080 TrkA-C domain HQ397_RS19205 PF02254 TrkA-N domain HQ397_RS19210 PF01565 FAD binding domain HQ397_RS19210 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ397_RS19215 PF02237 Biotin protein ligase C terminal domain HQ397_RS19215 PF03099 Biotin/lipoate A/B protein ligase family HQ397_RS19215 PF08279 HTH domain HQ397_RS19220 PF00485 Phosphoribulokinase / Uridine kinase family HQ397_RS19235 PF00009 Elongation factor Tu GTP binding domain HQ397_RS19235 PF03143 Elongation factor Tu C-terminal domain HQ397_RS19235 PF03144 Elongation factor Tu domain 2 HQ397_RS19245 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ397_RS19250 PF00467 KOW motif HQ397_RS19250 PF02357 Transcription termination factor nusG HQ397_RS19255 PF00298 Ribosomal protein L11, RNA binding domain HQ397_RS19255 PF03946 Ribosomal protein L11, N-terminal domain HQ397_RS19260 PF00687 Ribosomal protein L1p/L10e family HQ397_RS19265 PF00466 Ribosomal protein L10 HQ397_RS19270 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ397_RS19270 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ397_RS19275 PF04561 RNA polymerase Rpb2, domain 2 HQ397_RS19275 PF04563 RNA polymerase beta subunit HQ397_RS19275 PF04565 RNA polymerase Rpb2, domain 3 HQ397_RS19275 PF10385 RNA polymerase beta subunit external 1 domain HQ397_RS19275 PF00562 RNA polymerase Rpb2, domain 6 HQ397_RS19275 PF04560 RNA polymerase Rpb2, domain 7 HQ397_RS19280 PF04998 RNA polymerase Rpb1, domain 5 HQ397_RS19280 PF04983 RNA polymerase Rpb1, domain 3 HQ397_RS19280 PF05000 RNA polymerase Rpb1, domain 4 HQ397_RS19280 PF04997 RNA polymerase Rpb1, domain 1 HQ397_RS19280 PF00623 RNA polymerase Rpb1, domain 2 HQ397_RS19285 PF08348 YheO-like PAS domain HQ397_RS19285 PF13309 HTH domain HQ397_RS19290 PF01042 Endoribonuclease L-PSP HQ397_RS19295 PF02635 DsrE/DsrF-like family HQ397_RS19300 PF02635 DsrE/DsrF-like family HQ397_RS19305 PF04077 DsrH like protein HQ397_RS19310 PF00164 Ribosomal protein S12/S23 HQ397_RS19315 PF00177 Ribosomal protein S7p/S5e HQ397_RS19320 PF00009 Elongation factor Tu GTP binding domain HQ397_RS19320 PF03764 Elongation factor G, domain IV HQ397_RS19320 PF03144 Elongation factor Tu domain 2 HQ397_RS19320 PF00679 Elongation factor G C-terminus HQ397_RS19320 PF14492 Elongation Factor G, domain II HQ397_RS19325 PF00009 Elongation factor Tu GTP binding domain HQ397_RS19325 PF03144 Elongation factor Tu domain 2 HQ397_RS19325 PF03143 Elongation factor Tu C-terminal domain HQ397_RS19365 PF00860 Permease family HQ397_RS19370 PF02733 Dak1 domain HQ397_RS19375 PF02734 DAK2 domain HQ397_RS19380 PF00381 PTS HPr component phosphorylation site HQ397_RS19380 PF05524 PEP-utilising enzyme, N-terminal HQ397_RS19380 PF00391 PEP-utilising enzyme, mobile domain HQ397_RS19380 PF03610 PTS system fructose IIA component HQ397_RS19385 PF00465 Iron-containing alcohol dehydrogenase HQ397_RS19390 PF02954 Bacterial regulatory protein, Fis family HQ397_RS19390 PF00989 PAS fold HQ397_RS19390 PF00158 Sigma-54 interaction domain HQ397_RS19395 PF03466 LysR substrate binding domain HQ397_RS19395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS19400 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ397_RS19405 PF00106 short chain dehydrogenase HQ397_RS19410 PF01594 AI-2E family transporter HQ397_RS19415 PF00293 NUDIX domain HQ397_RS19440 PF00199 Catalase HQ397_RS19440 PF06628 Catalase-related immune-responsive HQ397_RS19445 PF00583 Acetyltransferase (GNAT) family HQ397_RS19475 PF00005 ABC transporter HQ397_RS19475 PF12857 TOBE-like domain HQ397_RS19485 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS19500 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS19500 PF07702 UTRA domain HQ397_RS19510 PF03466 LysR substrate binding domain HQ397_RS19510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS19520 PF02678 Pirin HQ397_RS19520 PF17954 Quercetinase C-terminal cupin domain HQ397_RS19525 PF07681 DoxX HQ397_RS19530 PF17946 RecC C-terminal domain HQ397_RS19535 PF00580 UvrD/REP helicase N-terminal domain HQ397_RS19535 PF13361 UvrD-like helicase C-terminal domain HQ397_RS19535 PF12705 PD-(D/E)XK nuclease superfamily HQ397_RS19540 PF13538 UvrD-like helicase C-terminal domain HQ397_RS19570 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS19580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS19580 PF00672 HAMP domain HQ397_RS19600 PF00072 Response regulator receiver domain HQ397_RS19600 PF00486 Transcriptional regulatory protein, C terminal HQ397_RS19605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS19605 PF00512 His Kinase A (phospho-acceptor) domain HQ397_RS19605 PF00672 HAMP domain HQ397_RS19610 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS19610 PF01590 GAF domain HQ397_RS19610 PF00563 EAL domain HQ397_RS19610 PF00360 Phytochrome region HQ397_RS19615 PF00593 TonB dependent receptor HQ397_RS19615 PF07715 TonB-dependent Receptor Plug Domain HQ397_RS19620 PF00313 'Cold-shock' DNA-binding domain HQ397_RS19630 PF16916 Dimerisation domain of Zinc Transporter HQ397_RS19630 PF01545 Cation efflux family HQ397_RS19640 PF00436 Single-strand binding protein family HQ397_RS19645 PF00196 Bacterial regulatory proteins, luxR family HQ397_RS19650 PF17760 UvrA interaction domain HQ397_RS19650 PF17755 UvrA DNA-binding domain HQ397_RS19650 PF00005 ABC transporter HQ397_RS19655 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS19660 PF03922 OmpW family HQ397_RS19665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS19665 PF00672 HAMP domain HQ397_RS19665 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS19680 PF02219 Methylenetetrahydrofolate reductase HQ397_RS19690 PF03594 Benzoate membrane transport protein HQ397_RS19695 PF07883 Cupin domain HQ397_RS19695 PF01381 Helix-turn-helix HQ397_RS19725 PF04363 Protein of unknown function (DUF496) HQ397_RS19735 PF04751 Protein of unknown function (DUF615) HQ397_RS19740 PF01523 Putative modulator of DNA gyrase HQ397_RS19745 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ397_RS19750 PF01722 BolA-like protein HQ397_RS19760 PF05494 MlaC protein HQ397_RS19765 PF02470 MlaD protein HQ397_RS19770 PF02405 Permease MlaE HQ397_RS19775 PF00005 ABC transporter HQ397_RS19780 PF00571 CBS domain HQ397_RS19780 PF01380 SIS domain HQ397_RS19790 PF06835 Lipopolysaccharide-assembly, LptC-related HQ397_RS19795 PF03968 OstA-like protein HQ397_RS19800 PF00005 ABC transporter HQ397_RS19800 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ397_RS19805 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ397_RS19805 PF04963 Sigma-54 factor, core binding domain HQ397_RS19805 PF04552 Sigma-54, DNA binding domain HQ397_RS19810 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ397_RS19815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ397_RS19820 PF03668 P-loop ATPase protein family HQ397_RS19825 PF00381 PTS HPr component phosphorylation site HQ397_RS19835 PF07071 KDGP aldolase HQ397_RS19840 PF03841 L-seryl-tRNA selenium transferase HQ397_RS19845 PF01979 Amidohydrolase family HQ397_RS19875 PF13180 PDZ domain HQ397_RS19880 PF13180 PDZ domain HQ397_RS19880 PF00595 PDZ domain HQ397_RS19890 PF03969 AFG1-like ATPase HQ397_RS19895 PF00572 Ribosomal protein L13 HQ397_RS19900 PF00380 Ribosomal protein S9/S16 HQ397_RS19905 PF00355 Rieske [2Fe-2S] domain HQ397_RS19905 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HQ397_RS19915 PF02167 Cytochrome C1 family HQ397_RS19920 PF00043 Glutathione S-transferase, C-terminal domain HQ397_RS19920 PF02798 Glutathione S-transferase, N-terminal domain HQ397_RS19925 PF04386 Stringent starvation protein B HQ397_RS19930 PF04972 BON domain HQ397_RS19935 PF13580 SIS domain HQ397_RS19940 PF02021 Uncharacterised protein family UPF0102 HQ397_RS19945 PF04348 LppC putative lipoprotein HQ397_RS19950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ397_RS19965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ397_RS19970 PF00813 FliP family HQ397_RS19975 PF01313 Bacterial export proteins, family 3 HQ397_RS19980 PF01311 Bacterial export proteins, family 1 HQ397_RS19985 PF01312 FlhB HrpN YscU SpaS Family HQ397_RS19990 PF01312 FlhB HrpN YscU SpaS Family HQ397_RS20000 PF00158 Sigma-54 interaction domain HQ397_RS20000 PF00072 Response regulator receiver domain HQ397_RS20000 PF02954 Bacterial regulatory protein, Fis family HQ397_RS20005 PF02049 Flagellar hook-basal body complex protein FliE HQ397_RS20010 PF01514 Secretory protein of YscJ/FliF family HQ397_RS20010 PF08345 Flagellar M-ring protein C-terminal HQ397_RS20015 PF14842 FliG N-terminal domain HQ397_RS20015 PF01706 FliG C-terminal domain HQ397_RS20015 PF14841 FliG middle domain HQ397_RS20025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ397_RS20025 PF18269 T3SS EscN ATPase C-terminal domain HQ397_RS20050 PF00460 Flagella basal body rod protein HQ397_RS20055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS20055 PF00460 Flagella basal body rod protein HQ397_RS20060 PF03963 Flagellar hook capping protein - N-terminal region HQ397_RS20060 PF13860 FlgD Ig-like domain HQ397_RS20060 PF13861 FlgD Tudor-like domain HQ397_RS20065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS20065 PF00460 Flagella basal body rod protein HQ397_RS20065 PF07559 Flagellar basal body protein FlaE HQ397_RS20070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS20070 PF00460 Flagella basal body rod protein HQ397_RS20075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS20075 PF00460 Flagella basal body rod protein HQ397_RS20080 PF02107 Flagellar L-ring protein HQ397_RS20085 PF02119 Flagellar P-ring protein HQ397_RS20095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ397_RS20095 PF00460 Flagella basal body rod protein HQ397_RS20100 PF00669 Bacterial flagellin N-terminal helical region HQ397_RS20120 PF00700 Bacterial flagellin C-terminal helical region HQ397_RS20120 PF00669 Bacterial flagellin N-terminal helical region HQ397_RS20125 PF07196 Flagellin hook IN motif HQ397_RS20125 PF07195 Flagellar hook-associated protein 2 C-terminus HQ397_RS20125 PF02465 Flagellar hook-associated protein 2 N-terminus HQ397_RS20130 PF02561 Flagellar protein FliS HQ397_RS20150 PF04545 Sigma-70, region 4 HQ397_RS20150 PF04542 Sigma-70 region 2 HQ397_RS20155 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS20160 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ397_RS20160 PF00691 OmpA family HQ397_RS20170 PF01476 LysM domain HQ397_RS20170 PF01464 Transglycosylase SLT domain HQ397_RS20180 PF02381 MraZ protein, putative antitoxin-like HQ397_RS20185 PF01795 MraW methylase family HQ397_RS20190 PF04999 Cell division protein FtsL HQ397_RS20195 PF00905 Penicillin binding protein transpeptidase domain HQ397_RS20195 PF03717 Penicillin-binding Protein dimerisation domain HQ397_RS20205 PF01225 Mur ligase family, catalytic domain HQ397_RS20205 PF02875 Mur ligase family, glutamate ligase domain HQ397_RS20205 PF08245 Mur ligase middle domain HQ397_RS20210 PF00953 Glycosyl transferase family 4 HQ397_RS20210 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ397_RS20215 PF02875 Mur ligase family, glutamate ligase domain HQ397_RS20215 PF08245 Mur ligase middle domain HQ397_RS20220 PF01098 Cell cycle protein HQ397_RS20225 PF04101 Glycosyltransferase family 28 C-terminal domain HQ397_RS20225 PF03033 Glycosyltransferase family 28 N-terminal domain HQ397_RS20230 PF01225 Mur ligase family, catalytic domain HQ397_RS20230 PF02875 Mur ligase family, glutamate ligase domain HQ397_RS20230 PF08245 Mur ligase middle domain HQ397_RS20235 PF08478 POTRA domain, FtsQ-type HQ397_RS20235 PF03799 Cell division protein FtsQ HQ397_RS20240 PF02491 SHS2 domain inserted in FTSA HQ397_RS20245 PF00091 Tubulin/FtsZ family, GTPase domain HQ397_RS20245 PF12327 FtsZ family, C-terminal domain HQ397_RS20250 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ397_RS20260 PF02810 SEC-C motif HQ397_RS20260 PF07517 SecA DEAD-like domain HQ397_RS20260 PF01043 SecA preprotein cross-linking domain HQ397_RS20260 PF07516 SecA Wing and Scaffold domain HQ397_RS20275 PF00293 NUDIX domain HQ397_RS20280 PF03884 DNA gyrase inhibitor YacG HQ397_RS20285 PF07072 Cell division protein HQ397_RS20290 PF01121 Dephospho-CoA kinase HQ397_RS20295 PF01478 Type IV leader peptidase family HQ397_RS20295 PF06750 Bacterial Peptidase A24 N-terminal domain HQ397_RS20300 PF00482 Type II secretion system (T2SS), protein F HQ397_RS20305 PF00437 Type II/IV secretion system protein HQ397_RS20305 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ397_RS20310 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS20315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ397_RS20315 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ397_RS20325 PF01510 N-acetylmuramoyl-L-alanine amidase HQ397_RS20330 PF07729 FCD domain HQ397_RS20330 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS20335 PF00456 Transketolase, thiamine diphosphate binding domain HQ397_RS20335 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ397_RS20340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ397_RS20340 PF00364 Biotin-requiring enzyme HQ397_RS20340 PF02817 e3 binding domain HQ397_RS20345 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ397_RS20345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ397_RS20355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS20355 PF00672 HAMP domain HQ397_RS20355 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS20360 PF00672 HAMP domain HQ397_RS20360 PF12729 Four helix bundle sensory module for signal transduction HQ397_RS20360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS20370 PF00330 Aconitase family (aconitate hydratase) HQ397_RS20370 PF06434 Aconitate hydratase 2 N-terminus HQ397_RS20370 PF11791 Aconitate B N-terminal domain HQ397_RS20375 PF12792 CSS motif domain associated with EAL HQ397_RS20375 PF00563 EAL domain HQ397_RS20380 PF03466 LysR substrate binding domain HQ397_RS20380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS20385 PF01810 LysE type translocator HQ397_RS20390 PF04030 D-arabinono-1,4-lactone oxidase HQ397_RS20390 PF01565 FAD binding domain HQ397_RS20395 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ397_RS20395 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ397_RS20400 PF07690 Major Facilitator Superfamily HQ397_RS20410 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ397_RS20415 PF02152 Dihydroneopterin aldolase HQ397_RS20420 PF02660 Glycerol-3-phosphate acyltransferase HQ397_RS20460 PF07670 Nucleoside recognition HQ397_RS20465 PF00072 Response regulator receiver domain HQ397_RS20465 PF01584 CheW-like domain HQ397_RS20470 PF00106 short chain dehydrogenase HQ397_RS20475 PF08351 Domain of unknown function (DUF1726) HQ397_RS20475 PF05127 Helicase HQ397_RS20475 PF17176 tRNA-binding domain HQ397_RS20475 PF13718 GNAT acetyltransferase 2 HQ397_RS20490 PF00210 Ferritin-like domain HQ397_RS20500 PF02142 MGS-like domain HQ397_RS20515 PF00710 Asparaginase, N-terminal HQ397_RS20515 PF17763 Glutaminase/Asparaginase C-terminal domain HQ397_RS20540 PF00128 Alpha amylase, catalytic domain HQ397_RS20540 PF11941 Domain of unknown function (DUF3459) HQ397_RS20545 PF14602 Hexapeptide repeat of succinyl-transferase HQ397_RS20545 PF12464 Maltose acetyltransferase HQ397_RS20550 PF01037 Lrp/AsnC ligand binding domain HQ397_RS20555 PF00892 EamA-like transporter family HQ397_RS20590 PF07179 SseB protein N-terminal domain HQ397_RS20590 PF14581 SseB protein C-terminal domain HQ397_RS20595 PF00171 Aldehyde dehydrogenase family HQ397_RS20600 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS20615 PF13416 Bacterial extracellular solute-binding protein HQ397_RS20620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS20620 PF03466 LysR substrate binding domain HQ397_RS20625 PF03553 Na+/H+ antiporter family HQ397_RS20670 PF00483 Nucleotidyl transferase HQ397_RS20675 PF05175 Methyltransferase small domain HQ397_RS20675 PF08468 Methyltransferase small domain N-terminal HQ397_RS20680 PF00701 Dihydrodipicolinate synthetase family HQ397_RS20685 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS20685 PF00563 EAL domain HQ397_RS20685 PF01590 GAF domain HQ397_RS20685 PF00360 Phytochrome region HQ397_RS20695 PF13419 Haloacid dehalogenase-like hydrolase HQ397_RS20700 PF17209 Hfq protein HQ397_RS20705 PF04403 Paraquat-inducible protein A HQ397_RS20710 PF02470 MlaD protein HQ397_RS20715 PF03886 ABC-type transport auxiliary lipoprotein component HQ397_RS20720 PF00691 OmpA family HQ397_RS20720 PF01389 OmpA-like transmembrane domain HQ397_RS20730 PF00657 GDSL-like Lipase/Acylhydrolase HQ397_RS20735 PF04076 Bacterial OB fold (BOF) protein HQ397_RS20740 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ397_RS20740 PF01464 Transglycosylase SLT domain HQ397_RS20745 PF04362 Bacterial Fe(2+) trafficking HQ397_RS20750 PF10576 Iron-sulfur binding domain of endonuclease III HQ397_RS20750 PF00633 Helix-hairpin-helix motif HQ397_RS20750 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ397_RS20750 PF14815 NUDIX domain HQ397_RS20755 PF16537 Type II secretion system protein B HQ397_RS20760 PF13401 AAA domain HQ397_RS20760 PF01471 Putative peptidoglycan binding domain HQ397_RS20765 PF01966 HD domain HQ397_RS20765 PF01743 Poly A polymerase head domain HQ397_RS20765 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ397_RS20780 PF04172 LrgB-like family HQ397_RS20785 PF03788 LrgA family HQ397_RS20790 PF03466 LysR substrate binding domain HQ397_RS20790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS20795 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS20795 PF00155 Aminotransferase class I and II HQ397_RS20815 PF07350 Protein of unknown function (DUF1479) HQ397_RS20820 PF04073 Aminoacyl-tRNA editing domain HQ397_RS20825 PF01384 Phosphate transporter family HQ397_RS20830 PF01865 Protein of unknown function DUF47 HQ397_RS20845 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ397_RS20850 PF00294 pfkB family carbohydrate kinase HQ397_RS20850 PF01467 Cytidylyltransferase-like HQ397_RS20855 PF02321 Outer membrane efflux protein HQ397_RS20860 PF00293 NUDIX domain HQ397_RS20865 PF06853 Protein of unknown function (DUF1249) HQ397_RS20870 PF00149 Calcineurin-like phosphoesterase HQ397_RS20875 PF05728 Uncharacterised protein family (UPF0227) HQ397_RS20880 PF00293 NUDIX domain HQ397_RS20890 PF07869 Protein of unknown function (DUF1656) HQ397_RS20895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ397_RS20895 PF00529 HlyD membrane-fusion protein of T1SS HQ397_RS20900 PF04632 Fusaric acid resistance protein family HQ397_RS20905 PF00204 DNA gyrase B HQ397_RS20905 PF00986 DNA gyrase B subunit, carboxyl terminus HQ397_RS20905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ397_RS20905 PF01751 Toprim domain HQ397_RS20910 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ397_RS20910 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ397_RS20915 PF07087 Protein of unknown function (DUF1353) HQ397_RS20950 PF00684 DnaJ central domain HQ397_RS20950 PF00226 DnaJ domain HQ397_RS20950 PF01556 DnaJ C terminal domain HQ397_RS20955 PF00578 AhpC/TSA family HQ397_RS20975 PF01553 Acyltransferase HQ397_RS20980 PF04012 PspA/IM30 family HQ397_RS20995 PF01541 GIY-YIG catalytic domain HQ397_RS21005 PF00892 EamA-like transporter family HQ397_RS21010 PF03167 Uracil DNA glycosylase superfamily HQ397_RS21015 PF00892 EamA-like transporter family HQ397_RS21020 PF03466 LysR substrate binding domain HQ397_RS21020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS21025 PF00950 ABC 3 transport family HQ397_RS21030 PF00005 ABC transporter HQ397_RS21035 PF01297 Zinc-uptake complex component A periplasmic HQ397_RS21055 PF01551 Peptidase family M23 HQ397_RS21055 PF08525 Opacity-associated protein A N-terminal motif HQ397_RS21055 PF01476 LysM domain HQ397_RS21060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ397_RS21065 PF04222 Protein of unknown function (DUF416) HQ397_RS21080 PF02028 BCCT, betaine/carnitine/choline family transporter HQ397_RS21085 PF00488 MutS domain V HQ397_RS21085 PF05190 MutS family domain IV HQ397_RS21085 PF01624 MutS domain I HQ397_RS21085 PF05192 MutS domain III HQ397_RS21085 PF05188 MutS domain II HQ397_RS21090 PF02464 Competence-damaged protein HQ397_RS21095 PF00154 recA bacterial DNA recombination protein HQ397_RS21100 PF02631 RecX family HQ397_RS21105 PF01411 tRNA synthetases class II (A) HQ397_RS21105 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ397_RS21105 PF02272 DHHA1 domain HQ397_RS21110 PF01842 ACT domain HQ397_RS21110 PF13840 ACT domain HQ397_RS21110 PF00696 Amino acid kinase family HQ397_RS21115 PF02599 Global regulator protein family HQ397_RS21155 PF09335 SNARE associated Golgi protein HQ397_RS21160 PF01595 Cyclin M transmembrane N-terminal domain HQ397_RS21160 PF00571 CBS domain HQ397_RS21160 PF03471 Transporter associated domain HQ397_RS21165 PF08264 Anticodon-binding domain of tRNA HQ397_RS21165 PF10458 Valyl tRNA synthetase tRNA binding arm HQ397_RS21165 PF00133 tRNA synthetases class I (I, L, M and V) HQ397_RS21170 PF04364 DNA polymerase III chi subunit, HolC HQ397_RS21175 PF00883 Cytosol aminopeptidase family, catalytic domain HQ397_RS21175 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ397_RS21180 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ397_RS21185 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ397_RS21415 PF02899 Phage integrase, N-terminal SAM-like domain HQ397_RS21415 PF00589 Phage integrase family HQ397_RS21420 PF00909 Ammonium Transporter Family HQ397_RS21425 PF01938 TRAM domain HQ397_RS21425 PF05958 tRNA (Uracil-5-)-methyltransferase HQ397_RS21435 PF07963 Prokaryotic N-terminal methylation motif HQ397_RS21440 PF01026 TatD related DNase HQ397_RS21445 PF07670 Nucleoside recognition HQ397_RS21445 PF07662 Na+ dependent nucleoside transporter C-terminus HQ397_RS21445 PF01773 Na+ dependent nucleoside transporter N-terminus HQ397_RS21455 PF01791 DeoC/LacD family aldolase HQ397_RS21460 PF02885 Glycosyl transferase family, helical bundle domain HQ397_RS21460 PF00591 Glycosyl transferase family, a/b domain HQ397_RS21460 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ397_RS21465 PF01676 Metalloenzyme superfamily HQ397_RS21470 PF01048 Phosphorylase superfamily HQ397_RS21475 PF08448 PAS fold HQ397_RS21475 PF00990 Diguanylate cyclase, GGDEF domain HQ397_RS21475 PF05231 MASE1 HQ397_RS21475 PF00563 EAL domain HQ397_RS21475 PF08447 PAS fold HQ397_RS21475 PF13426 PAS domain HQ397_RS21485 PF18429 Domain of unknown function (DUF5609) HQ397_RS21500 PF18073 Rubredoxin metal binding domain HQ397_RS21505 PF07238 PilZ domain HQ397_RS21510 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ397_RS21515 PF00216 Bacterial DNA-binding protein HQ397_RS21530 PF01207 Dihydrouridine synthase (Dus) HQ397_RS21535 PF01475 Ferric uptake regulator family HQ397_RS21550 PF05525 Branched-chain amino acid transport protein HQ397_RS21555 PF05525 Branched-chain amino acid transport protein HQ397_RS21560 PF05175 Methyltransferase small domain HQ397_RS21565 PF00270 DEAD/DEAH box helicase HQ397_RS21565 PF00271 Helicase conserved C-terminal domain HQ397_RS21570 PF03883 Peroxide stress protein YaaA HQ397_RS21575 PF00437 Type II/IV secretion system protein HQ397_RS21580 PF00437 Type II/IV secretion system protein HQ397_RS21585 PF01168 Alanine racemase, N-terminal domain HQ397_RS21590 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ397_RS21590 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ397_RS21595 PF02325 YGGT family HQ397_RS21600 PF02594 Uncharacterised ACR, YggU family COG1872 HQ397_RS21615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ397_RS21625 PF00132 Bacterial transferase hexapeptide (six repeats) HQ397_RS21630 PF10952 Protein of unknown function (DUF2753) HQ397_RS21635 PF00378 Enoyl-CoA hydratase/isomerase HQ397_RS21650 PF00106 short chain dehydrogenase HQ397_RS21655 PF03129 Anticodon binding domain HQ397_RS21655 PF04073 Aminoacyl-tRNA editing domain HQ397_RS21655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ397_RS21660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS21660 PF00672 HAMP domain HQ397_RS21665 PF07499 RuvA, C-terminal domain HQ397_RS21665 PF01330 RuvA N terminal domain HQ397_RS21670 PF17864 RuvB AAA lid domain HQ397_RS21670 PF05491 RuvB C-terminal winged helix domain HQ397_RS21670 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ397_RS21675 PF01654 Cytochrome bd terminal oxidase subunit I HQ397_RS21680 PF02322 Cytochrome bd terminal oxidase subunit II HQ397_RS21685 PF08173 Membrane bound YbgT-like protein HQ397_RS21690 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ397_RS21695 PF03061 Thioesterase superfamily HQ397_RS21700 PF01618 MotA/TolQ/ExbB proton channel family HQ397_RS21705 PF02472 Biopolymer transport protein ExbD/TolR HQ397_RS21715 PF04052 TolB amino-terminal domain HQ397_RS21715 PF07676 WD40-like Beta Propeller Repeat HQ397_RS21720 PF00691 OmpA family HQ397_RS21725 PF13174 Tetratricopeptide repeat HQ397_RS21725 PF16331 TolA binding protein trimerisation HQ397_RS21800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS21800 PF00672 HAMP domain HQ397_RS21805 PF02445 Quinolinate synthetase A protein HQ397_RS21810 PF01263 Aldose 1-epimerase HQ397_RS21815 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ397_RS21815 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ397_RS21820 PF02446 4-alpha-glucanotransferase HQ397_RS21825 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ397_RS21825 PF02806 Alpha amylase, C-terminal all-beta domain HQ397_RS21825 PF00128 Alpha amylase, catalytic domain HQ397_RS21830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ397_RS21830 PF00128 Alpha amylase, catalytic domain HQ397_RS21835 PF01641 SelR domain HQ397_RS21845 PF00293 NUDIX domain HQ397_RS21850 PF00107 Zinc-binding dehydrogenase HQ397_RS21850 PF16884 N-terminal domain of oxidoreductase HQ397_RS21855 PF02566 OsmC-like protein HQ397_RS21860 PF01047 MarR family HQ397_RS21875 PF01037 Lrp/AsnC ligand binding domain HQ397_RS21885 PF07690 Major Facilitator Superfamily HQ397_RS21910 PF00209 Sodium:neurotransmitter symporter family HQ397_RS21920 PF00209 Sodium:neurotransmitter symporter family HQ397_RS21945 PF00392 Bacterial regulatory proteins, gntR family HQ397_RS21945 PF00155 Aminotransferase class I and II HQ397_RS21955 PF01810 LysE type translocator HQ397_RS21960 PF01177 Asp/Glu/Hydantoin racemase HQ397_RS21965 PF00394 Multicopper oxidase HQ397_RS21965 PF07731 Multicopper oxidase HQ397_RS21965 PF07732 Multicopper oxidase HQ397_RS21975 PF04074 YhcH/YjgK/YiaL HQ397_RS21980 PF00871 Acetokinase family HQ397_RS21985 PF00924 Mechanosensitive ion channel HQ397_RS21990 PF17969 L,D-transpeptidase C-terminal domain HQ397_RS21990 PF03734 L,D-transpeptidase catalytic domain HQ397_RS21995 PF00474 Sodium:solute symporter family HQ397_RS22005 PF13411 MerR HTH family regulatory protein HQ397_RS22040 PF02525 Flavodoxin-like fold HQ397_RS22045 PF03466 LysR substrate binding domain HQ397_RS22045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS22050 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ397_RS22060 PF12848 ABC transporter HQ397_RS22060 PF00005 ABC transporter HQ397_RS22065 PF01380 SIS domain HQ397_RS22065 PF00571 CBS domain HQ397_RS22070 PF01957 NfeD-like C-terminal, partner-binding HQ397_RS22075 PF16200 C-terminal region of band_7 HQ397_RS22075 PF01145 SPFH domain / Band 7 family HQ397_RS22080 PF10414 Sirohaem synthase dimerisation region HQ397_RS22080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ397_RS22080 PF14824 Sirohaem biosynthesis protein central HQ397_RS22085 PF01507 Phosphoadenosine phosphosulfate reductase family HQ397_RS22090 PF00009 Elongation factor Tu GTP binding domain HQ397_RS22095 PF03600 Citrate transporter HQ397_RS22095 PF02080 TrkA-C domain HQ397_RS22120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ397_RS22120 PF08447 PAS fold HQ397_RS22140 PF00005 ABC transporter HQ397_RS22155 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ397_RS22170 PF00719 Inorganic pyrophosphatase HQ397_RS22175 PF08245 Mur ligase middle domain HQ397_RS22175 PF02875 Mur ligase family, glutamate ligase domain HQ397_RS22175 PF01225 Mur ligase family, catalytic domain HQ397_RS22180 PF02441 Flavoprotein HQ397_RS22185 PF00440 Bacterial regulatory proteins, tetR family HQ397_RS22190 PF00156 Phosphoribosyl transferase domain HQ397_RS22195 PF00005 ABC transporter HQ397_RS22200 PF01061 ABC-2 type transporter HQ397_RS22205 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HQ397_RS22210 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ397_RS22240 PF02569 Pantoate-beta-alanine ligase HQ397_RS22245 PF02548 Ketopantoate hydroxymethyltransferase HQ397_RS22250 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ397_RS22255 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ397_RS22255 PF12626 Polymerase A arginine-rich C-terminus HQ397_RS22255 PF01743 Poly A polymerase head domain HQ397_RS22260 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ397_RS22265 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ397_RS22285 PF14814 Bifunctional transglycosylase second domain HQ397_RS22285 PF00905 Penicillin binding protein transpeptidase domain HQ397_RS22285 PF00912 Transglycosylase HQ397_RS22290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ397_RS22295 PF00893 Small Multidrug Resistance protein HQ397_RS22300 PF00893 Small Multidrug Resistance protein HQ397_RS22310 PF11849 Domain of unknown function (DUF3369) HQ397_RS22320 PF01569 PAP2 superfamily HQ397_RS22335 PF00202 Aminotransferase class-III HQ397_RS22340 PF00654 Voltage gated chloride channel HQ397_RS22350 PF01521 Iron-sulphur cluster biosynthesis HQ397_RS22380 PF02867 Ribonucleotide reductase, barrel domain HQ397_RS22380 PF00317 Ribonucleotide reductase, all-alpha domain HQ397_RS22380 PF08343 Ribonucleotide reductase N-terminal HQ397_RS22390 PF02562 PhoH-like protein HQ397_RS22390 PF13638 PIN domain HQ397_RS22400 PF00005 ABC transporter HQ397_RS22405 PF00528 Binding-protein-dependent transport system inner membrane component HQ397_RS22425 PF00694 Aconitase C-terminal domain HQ397_RS22430 PF00330 Aconitase family (aconitate hydratase) HQ397_RS22435 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ397_RS22440 PF00682 HMGL-like HQ397_RS22440 PF08502 LeuA allosteric (dimerisation) domain HQ397_RS22450 PF01569 PAP2 superfamily HQ397_RS22465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ397_RS22465 PF00205 Thiamine pyrophosphate enzyme, central domain HQ397_RS22465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ397_RS22470 PF10369 Small subunit of acetolactate synthase HQ397_RS22475 PF07085 DRTGG domain HQ397_RS22475 PF01515 Phosphate acetyl/butaryl transferase HQ397_RS22480 PF00871 Acetokinase family HQ397_RS22485 PF04217 Protein of unknown function, DUF412 HQ397_RS22490 PF03887 YfbU domain HQ397_RS22495 PF00578 AhpC/TSA family HQ397_RS22500 PF01842 ACT domain HQ397_RS22505 PF00701 Dihydrodipicolinate synthetase family HQ397_RS22510 PF06804 NlpB/DapX lipoprotein HQ397_RS22515 PF01259 SAICAR synthetase HQ397_RS22525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ397_RS22525 PF03466 LysR substrate binding domain HQ397_RS22530 PF09829 Uncharacterized protein conserved in bacteria (DUF2057)