RY45_RS00005 PF00308 Bacterial dnaA protein RY45_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix RY45_RS00005 PF11638 DnaA N-terminal domain RY45_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RY45_RS00010 PF02767 DNA polymerase III beta subunit, central domain RY45_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RY45_RS00015 PF02463 RecF/RecN/SMC N terminal domain RY45_RS00020 PF00204 DNA gyrase B RY45_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus RY45_RS00020 PF01751 Toprim domain RY45_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS00025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS00030 PF08279 HTH domain RY45_RS00030 PF13280 RY45_RS00030 RY45_RS00035 PF00011 Hsp20/alpha crystallin family RY45_RS00040 PF00011 Hsp20/alpha crystallin family RY45_RS00045 PF00155 Aminotransferase class I and II RY45_RS00055 PF02311 AraC-like ligand binding domain RY45_RS00055 PF12833 Helix-turn-helix domain RY45_RS00060 PF07690 Major Facilitator Superfamily RY45_RS00065 PF00072 Response regulator receiver domain RY45_RS00065 PF00486 Transcriptional regulatory protein, C terminal RY45_RS00070 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS00070 PF02702 Osmosensitive K+ channel His kinase sensor domain RY45_RS00070 PF13493 Domain of unknown function (DUF4118) RY45_RS00075 PF02669 RY45_RS00075 RY45_RS00080 PF00122 E1-E2 ATPase RY45_RS00080 PF00702 haloacid dehalogenase-like hydrolase RY45_RS00085 PF03814 RY45_RS00085 RY45_RS00090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_RS00090 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS00095 PF00672 HAMP domain RY45_RS00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS00095 PF13426 PAS domain RY45_RS00095 PF17149 RY45_RS00095 RY45_RS00100 PF00873 AcrB/AcrD/AcrF family RY45_RS00105 PF00529 HlyD family secretion protein RY45_RS00105 PF16576 RY45_RS00105 RY45_RS00110 PF00440 Bacterial regulatory proteins, tetR family RY45_RS00110 PF16295 RY45_RS00110 RY45_RS00135 PF00652 Ricin-type beta-trefoil lectin domain RY45_RS00140 PF00224 Pyruvate kinase, barrel domain RY45_RS00145 PF07690 Major Facilitator Superfamily RY45_RS00150 PF13343 Bacterial extracellular solute-binding protein RY45_RS00155 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS00155 PF00672 HAMP domain RY45_RS00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS00155 PF13426 PAS domain RY45_RS00160 PF00072 Response regulator receiver domain RY45_RS00160 PF02954 Bacterial regulatory protein, Fis family RY45_RS00160 PF14532 Sigma-54 interaction domain RY45_RS00170 PF08282 haloacid dehalogenase-like hydrolase RY45_RS00175 PF12146 Putative lysophospholipase RY45_RS00180 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS00185 PF00588 SpoU rRNA Methylase family RY45_RS00185 PF12105 SpoU, rRNA methylase, C-terminal RY45_RS00190 PF02824 TGS domain RY45_RS00190 PF04607 Region found in RelA / SpoT proteins RY45_RS00190 PF13291 ACT domain RY45_RS00190 PF13328 HD domain RY45_RS00195 PF01192 RNA polymerase Rpb6 RY45_RS00200 PF00625 Guanylate kinase RY45_RS00205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_RS00210 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family RY45_RS00215 PF00990 GGDEF domain RY45_RS00215 PF08447 PAS fold RY45_RS00220 PF00892 EamA-like transporter family RY45_RS00230 PF00892 EamA-like transporter family RY45_RS00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS00235 PF03466 LysR substrate binding domain RY45_RS00240 PF00579 tRNA synthetases class I (W and Y) RY45_RS00245 PF00582 Universal stress protein family RY45_RS00250 PF07055 Enoyl reductase FAD binding domain RY45_RS00250 PF12241 Trans-2-enoyl-CoA reductase catalytic region RY45_RS00250 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RY45_RS00255 PF00990 GGDEF domain RY45_RS00260 PF00210 Ferritin-like domain RY45_RS00265 PF03486 HI0933-like protein RY45_RS00270 PF07690 Major Facilitator Superfamily RY45_RS00275 PF01810 RY45_RS00275 RY45_RS00280 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RY45_RS00290 PF15976 RY45_RS00290 RY45_RS00290 PF16967 RY45_RS00290 RY45_RS00300 PF16449 RY45_RS00300 RY45_RS00305 PF00072 Response regulator receiver domain RY45_RS00305 PF00196 Bacterial regulatory proteins, luxR family RY45_RS00310 PF00072 Response regulator receiver domain RY45_RS00310 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS00310 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS00310 PF01627 Hpt domain RY45_RS00310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS00320 PF06580 RY45_RS00320 RY45_RS00320 PF07694 5TMR of 5TMR-LYT RY45_RS00325 PF00072 Response regulator receiver domain RY45_RS00325 PF04397 LytTr DNA-binding domain RY45_RS00330 PF07690 Major Facilitator Superfamily RY45_RS00335 PF02222 ATP-grasp domain RY45_RS00340 PF00731 AIR carboxylase RY45_RS00350 PF05982 RY45_RS00350 RY45_RS00355 PF05954 Phage late control gene D protein (GPD) RY45_RS00360 PF06995 RY45_RS00360 RY45_RS00365 PF10145 RY45_RS00365 RY45_RS00375 PF10109 RY45_RS00375 RY45_RS00380 PF04985 RY45_RS00380 RY45_RS00385 PF04984 Phage tail sheath protein RY45_RS00390 PF02413 RY45_RS00390 RY45_RS00395 PF12571 RY45_RS00395 RY45_RS00400 PF09684 RY45_RS00400 RY45_RS00405 PF04865 RY45_RS00405 RY45_RS00410 PF04965 Gene 25-like lysozyme RY45_RS00415 PF04717 Phage-related baseplate assembly protein RY45_RS00420 PF05069 RY45_RS00420 RY45_RS00425 PF06891 RY45_RS00425 RY45_RS00435 PF01471 Putative peptidoglycan binding domain RY45_RS00435 PF11860 RY45_RS00435 RY45_RS00440 PF05449 RY45_RS00440 RY45_RS00450 PF16931 RY45_RS00450 RY45_RS00455 PF01258 Prokaryotic dksA/traR C4-type zinc finger RY45_RS00460 PF05489 Phage Tail Protein X RY45_RS00465 PF05926 RY45_RS00465 RY45_RS00470 PF05944 RY45_RS00470 RY45_RS00475 PF05125 RY45_RS00475 RY45_RS00480 PF05929 RY45_RS00480 RY45_RS00485 PF03237 Terminase-like family RY45_RS00485 PF06056 Putative ATPase subunit of terminase (gpP-like) RY45_RS00490 PF04860 Phage portal protein RY45_RS00500 PF13518 Helix-turn-helix domain RY45_RS00505 PF11686 RY45_RS00505 RY45_RS00520 PF12961 Domain of Unknown Function with PDB structure (DUF3850) RY45_RS00535 PF05840 RY45_RS00535 RY45_RS00580 PF05099 Tellurite resistance protein TerB RY45_RS00595 PF04606 RY45_RS00595 RY45_RS00600 PF06892 RY45_RS00600 RY45_RS00620 PF00589 Phage integrase family RY45_RS00625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS00625 PF03466 LysR substrate binding domain RY45_RS00630 PF00593 TonB dependent receptor RY45_RS00630 PF07715 TonB-dependent Receptor Plug Domain RY45_RS00645 PF00076 RNA recognition motif RY45_RS00680 PF07969 Amidohydrolase family RY45_RS00685 PF02537 RY45_RS00685 RY45_RS00690 PF01209 ubiE/COQ5 methyltransferase family RY45_RS00695 PF02036 SCP-2 sterol transfer family RY45_RS00700 PF03109 RY45_RS00700 RY45_RS00705 PF02416 mttA/Hcf106 family RY45_RS00710 PF02416 mttA/Hcf106 family RY45_RS00715 PF00902 Sec-independent protein translocase protein (TatC) RY45_RS00720 PF01026 TatD related DNase RY45_RS00725 PF00490 Delta-aminolevulinic acid dehydratase RY45_RS00730 PF01432 Peptidase family M3 RY45_RS00735 PF00563 EAL domain RY45_RS00735 PF00989 PAS fold RY45_RS00735 PF00990 GGDEF domain RY45_RS00735 PF13426 PAS domain RY45_RS00740 PF04445 Putative SAM-dependent methyltransferase RY45_RS00745 PF07073 Modulator of Rho-dependent transcription termination (ROF) RY45_RS00750 PF14321 RY45_RS00750 RY45_RS00755 PF02541 Ppx/GppA phosphatase family RY45_RS00760 PF00270 DEAD/DEAH box helicase RY45_RS00760 PF00271 Helicase conserved C-terminal domain RY45_RS00765 PF00085 Thioredoxin RY45_RS00770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_RS00770 PF07497 Rho termination factor, RNA-binding domain RY45_RS00770 PF07498 Rho termination factor, N-terminal domain RY45_RS00780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RY45_RS00785 PF00175 Oxidoreductase NAD-binding domain RY45_RS00790 PF04380 RY45_RS00790 RY45_RS00795 PF12262 RY45_RS00795 RY45_RS00800 PF01694 Rhomboid family RY45_RS00800 PF12122 Protein of unknown function (DUF3582) RY45_RS00805 PF00581 Rhodanese-like domain RY45_RS00810 PF01810 RY45_RS00810 RY45_RS00815 PF02311 AraC-like ligand binding domain RY45_RS00815 PF12833 Helix-turn-helix domain RY45_RS00820 PF00005 ABC transporter RY45_RS00825 PF00005 ABC transporter RY45_RS00825 PF12399 Branched-chain amino acid ATP-binding cassette transporter RY45_RS00830 PF02653 RY45_RS00830 RY45_RS00830 PF11862 RY45_RS00830 RY45_RS00835 PF02653 RY45_RS00835 RY45_RS00840 PF13458 Periplasmic binding protein RY45_RS00845 PF00356 Bacterial regulatory proteins, lacI family RY45_RS00845 PF13377 Periplasmic binding protein-like domain RY45_RS00850 PF02056 Family 4 glycosyl hydrolase RY45_RS00850 PF11975 Family 4 glycosyl hydrolase C-terminal domain RY45_RS00855 PF00367 phosphotransferase system, EIIB RY45_RS00855 PF02378 Phosphotransferase system, EIIC RY45_RS00860 PF00392 Bacterial regulatory proteins, gntR family RY45_RS00860 PF07702 UTRA domain RY45_RS00865 PF00158 Sigma-54 interaction domain RY45_RS00865 PF01590 GAF domain RY45_RS00870 PF00258 Flavodoxin RY45_RS00870 PF00301 Rubredoxin RY45_RS00870 PF00753 Metallo-beta-lactamase superfamily RY45_RS00875 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS00880 PF09313 Domain of unknown function (DUF1971) RY45_RS00885 PF12801 RY45_RS00885 RY45_RS00890 PF03222 Tryptophan/tyrosine permease family RY45_RS00900 PF05932 Tir chaperone protein (CesT) family RY45_RS00905 PF03545 Yersinia virulence determinant (YopE) RY45_RS00910 PF10517 RY45_RS00910 RY45_RS00920 PF13671 AAA domain RY45_RS00925 PF02092 RY45_RS00925 RY45_RS00925 PF05746 DALR anticodon binding domain RY45_RS00930 PF02091 Glycyl-tRNA synthetase alpha subunit RY45_RS00935 PF03352 Methyladenine glycosylase RY45_RS00940 PF00857 Isochorismatase family RY45_RS00945 PF00691 OmpA family RY45_RS00945 PF13488 RY45_RS00945 RY45_RS00955 PF01042 Endoribonuclease L-PSP RY45_RS00960 PF01206 Sulfurtransferase TusA RY45_RS00970 PF01547 Bacterial extracellular solute-binding protein RY45_RS00975 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS00975 PF00672 HAMP domain RY45_RS00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS00980 PF00072 Response regulator receiver domain RY45_RS00980 PF00486 Transcriptional regulatory protein, C terminal RY45_RS00985 PF00108 Thiolase, N-terminal domain RY45_RS00985 PF02803 Thiolase, C-terminal domain RY45_RS00990 PF00378 Enoyl-CoA hydratase/isomerase family RY45_RS00990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RY45_RS00990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RY45_RS00995 PF00501 AMP-binding enzyme RY45_RS00995 PF13193 AMP-binding enzyme C-terminal domain RY45_RS00995 PF16177 RY45_RS00995 RY45_RS01000 PF00557 Metallopeptidase family M24 RY45_RS01005 PF01205 Uncharacterized protein family UPF0029 RY45_RS01005 PF09186 Domain of unknown function (DUF1949) RY45_RS01010 PF02386 Cation transport protein RY45_RS01015 PF12724 Flavodoxin domain RY45_RS01040 PF13302 Acetyltransferase (GNAT) domain RY45_RS01040 PF13380 CoA binding domain RY45_RS01040 PF13549 ATP-grasp domain RY45_RS01040 PF13607 Succinyl-CoA ligase like flavodoxin domain RY45_RS01050 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS01055 PF03466 LysR substrate binding domain RY45_RS01060 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RY45_RS01060 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain RY45_RS01065 PF00342 Phosphoglucose isomerase RY45_RS01080 PF00924 Mechanosensitive ion channel RY45_RS01080 PF05552 Conserved TM helix RY45_RS01085 PF00440 Bacterial regulatory proteins, tetR family RY45_RS01090 PF00692 dUTPase RY45_RS01095 PF02441 Flavoprotein RY45_RS01095 PF04127 DNA / pantothenate metabolism flavoprotein RY45_RS01100 PF04002 RadC-like JAB domain RY45_RS01105 PF00471 Ribosomal protein L33 RY45_RS01115 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RY45_RS01115 PF06827 Zinc finger found in FPG and IleRS RY45_RS01115 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RY45_RS01120 PF04393 RY45_RS01120 RY45_RS01125 PF01467 Cytidylyltransferase RY45_RS01130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_RS01135 PF00535 Glycosyl transferase family 2 RY45_RS01140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_RS01145 PF00534 Glycosyl transferases group 1 RY45_RS01145 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RY45_RS01150 PF03611 RY45_RS01150 RY45_RS01155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_RS01160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS01165 PF00356 Bacterial regulatory proteins, lacI family RY45_RS01165 PF13377 Periplasmic binding protein-like domain RY45_RS01170 PF00107 Zinc-binding dehydrogenase RY45_RS01170 PF08240 Alcohol dehydrogenase GroES-like domain RY45_RS01175 PF10973 RY45_RS01175 RY45_RS01180 PF03748 RY45_RS01180 RY45_RS01185 PF04345 Chorismate lyase RY45_RS01190 PF01040 UbiA prenyltransferase family RY45_RS01195 PF01553 Acyltransferase RY45_RS01200 PF00717 Peptidase S24-like RY45_RS01200 PF01726 LexA DNA binding domain RY45_RS01210 PF02630 SCO1/SenC RY45_RS01215 PF01554 MatE RY45_RS01220 PF00588 SpoU rRNA Methylase family RY45_RS01225 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS01225 PF00672 HAMP domain RY45_RS01225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS01230 PF00072 Response regulator receiver domain RY45_RS01230 PF00486 Transcriptional regulatory protein, C terminal RY45_RS01235 PF01545 Cation efflux family RY45_RS01235 PF16916 RY45_RS01235 RY45_RS01240 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS01240 PF06426 Serine acetyltransferase, N-terminal RY45_RS01250 PF06005 Protein of unknown function (DUF904) RY45_RS01255 PF01965 DJ-1/PfpI family RY45_RS01260 PF00476 DNA polymerase family A RY45_RS01260 PF01367 5'-3' exonuclease, C-terminal SAM fold RY45_RS01260 PF01612 3'-5' exonuclease RY45_RS01260 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RY45_RS01265 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS01305 PF00356 Bacterial regulatory proteins, lacI family RY45_RS01305 PF13377 Periplasmic binding protein-like domain RY45_RS01310 PF00703 Glycosyl hydrolases family 2 RY45_RS01310 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RY45_RS01310 PF02837 Glycosyl hydrolases family 2, sugar binding domain RY45_RS01310 PF02929 Beta galactosidase small chain RY45_RS01310 PF16353 RY45_RS01310 RY45_RS01315 PF04074 Domain of unknown function (DUF386) RY45_RS01320 PF13520 Amino acid permease RY45_RS01325 PF01588 Putative tRNA binding domain RY45_RS01330 PF13520 Amino acid permease RY45_RS01335 PF13593 SBF-like CPA transporter family (DUF4137) RY45_RS01340 PF03781 Sulfatase-modifying factor enzyme 1 RY45_RS01340 PF08241 Methyltransferase domain RY45_RS01340 PF12867 DinB superfamily RY45_RS01345 PF10988 Protein of unknown function (DUF2807) RY45_RS01350 PF00756 Putative esterase RY45_RS01355 PF00107 Zinc-binding dehydrogenase RY45_RS01355 PF08240 Alcohol dehydrogenase GroES-like domain RY45_RS01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS01360 PF03466 LysR substrate binding domain RY45_RS01365 PF02653 RY45_RS01365 RY45_RS01370 PF02653 RY45_RS01370 RY45_RS01375 PF00005 ABC transporter RY45_RS01380 PF02608 Basic membrane protein RY45_RS01385 PF00580 UvrD/REP helicase N-terminal domain RY45_RS01385 PF13361 UvrD-like helicase C-terminal domain RY45_RS01405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS01405 PF03466 LysR substrate binding domain RY45_RS01425 PF14001 RY45_RS01425 RY45_RS01430 PF09351 Domain of unknown function (DUF1993) RY45_RS01435 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RY45_RS01440 PF07883 Cupin domain RY45_RS01445 PF11769 RY45_RS01445 RY45_RS01450 PF06206 CpeT/CpcT family (DUF1001) RY45_RS01455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS01455 PF03466 LysR substrate binding domain RY45_RS01460 PF01810 RY45_RS01460 RY45_RS01465 PF11144 RY45_RS01465 RY45_RS01470 PF04143 RY45_RS01470 RY45_RS01475 PF00122 E1-E2 ATPase RY45_RS01475 PF00689 Cation transporting ATPase, C-terminus RY45_RS01475 PF00690 Cation transporter/ATPase, N-terminus RY45_RS01475 PF00702 haloacid dehalogenase-like hydrolase RY45_RS01480 PF01810 RY45_RS01480 RY45_RS01485 PF02311 AraC-like ligand binding domain RY45_RS01485 PF12833 Helix-turn-helix domain RY45_RS01490 PF00892 EamA-like transporter family RY45_RS01500 PF00171 Aldehyde dehydrogenase family RY45_RS01505 PF01381 Helix-turn-helix RY45_RS01505 PF07883 Cupin domain RY45_RS01510 PF00202 Aminotransferase class-III RY45_RS01515 PF00171 Aldehyde dehydrogenase family RY45_RS01520 PF00117 Glutamine amidotransferase class-I RY45_RS01525 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RY45_RS01525 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RY45_RS01530 PF00294 pfkB family carbohydrate kinase RY45_RS01535 PF02082 Transcriptional regulator RY45_RS01540 PF13187 4Fe-4S dicluster domain RY45_RS01550 PF02646 RY45_RS01550 RY45_RS01555 PF02386 Cation transport protein RY45_RS01560 PF02080 TrkA-C domain RY45_RS01560 PF02254 TrkA-N domain RY45_RS01565 PF01029 NusB family RY45_RS01565 PF01189 NOL1/NOP2/sun family RY45_RS01570 PF00551 Formyl transferase RY45_RS01570 PF02911 Formyl transferase, C-terminal domain RY45_RS01575 PF01327 Polypeptide deformylase RY45_RS01580 PF01476 LysM domain RY45_RS01585 PF02481 DNA recombination-mediator protein A RY45_RS01590 PF04361 RY45_RS01590 RY45_RS01595 PF01396 RY45_RS01595 RY45_RS01600 PF00731 AIR carboxylase RY45_RS01605 PF01300 Telomere recombination RY45_RS01610 PF01218 Coproporphyrinogen III oxidase RY45_RS01615 PF01488 Shikimate / quinate 5-dehydrogenase RY45_RS01615 PF08501 Shikimate dehydrogenase substrate binding domain RY45_RS01620 PF07369 Protein of unknown function (DUF1488) RY45_RS01625 PF01926 50S ribosome-binding GTPase RY45_RS01630 PF00034 Cytochrome c RY45_RS01640 PF04220 RY45_RS01640 RY45_RS01645 PF10675 RY45_RS01645 RY45_RS01650 PF04055 Radical SAM superfamily RY45_RS01650 PF06969 HemN C-terminal domain RY45_RS01655 PF00962 Adenosine/AMP deaminase RY45_RS01660 PF00072 Response regulator receiver domain RY45_RS01660 PF00158 Sigma-54 interaction domain RY45_RS01660 PF02954 Bacterial regulatory protein, Fis family RY45_RS01665 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS01665 PF00989 PAS fold RY45_RS01665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS01670 PF13511 RY45_RS01670 RY45_RS01675 PF00120 Glutamine synthetase, catalytic domain RY45_RS01675 PF03951 Glutamine synthetase, beta-Grasp domain RY45_RS01680 PF00009 Elongation factor Tu GTP binding domain RY45_RS01680 PF00679 Elongation factor G C-terminus RY45_RS01680 PF03144 Elongation factor Tu domain 2 RY45_RS01685 PF03631 RY45_RS01685 RY45_RS01695 PF02580 D-Tyr-tRNA(Tyr) deacylase RY45_RS01700 PF01564 Spermine/spermidine synthase RY45_RS01710 PF00583 Acetyltransferase (GNAT) family RY45_RS01710 PF09500 Putative thioesterase (yiiD_Cterm) RY45_RS01715 PF13502 RY45_RS01715 RY45_RS01720 PF00270 DEAD/DEAH box helicase RY45_RS01720 PF00271 Helicase conserved C-terminal domain RY45_RS01720 PF17191 RY45_RS01720 RY45_RS01725 PF13091 PLD-like domain RY45_RS01730 PF02447 RY45_RS01730 RY45_RS01735 PF01202 Shikimate kinase RY45_RS01740 PF00920 Dehydratase family RY45_RS01745 PF01081 KDPG and KHG aldolase RY45_RS01750 PF00356 Bacterial regulatory proteins, lacI family RY45_RS01750 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_RS01755 PF00805 Pentapeptide repeats (8 copies) RY45_RS01755 PF13599 Pentapeptide repeats (9 copies) RY45_RS01760 PF01551 Peptidase family M23 RY45_RS01765 PF01676 Metalloenzyme superfamily RY45_RS01765 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RY45_RS01770 PF00581 Rhodanese-like domain RY45_RS01775 PF02556 Preprotein translocase subunit SecB RY45_RS01780 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RY45_RS01780 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RY45_RS01785 PF01106 NifU-like domain RY45_RS01785 PF01521 Iron-sulphur cluster biosynthesis RY45_RS01795 PF00561 alpha/beta hydrolase fold RY45_RS01805 PF12118 RY45_RS01805 RY45_RS01815 PF00575 S1 RNA binding domain RY45_RS01815 PF09371 Tex-like protein N-terminal domain RY45_RS01815 PF12836 Helix-hairpin-helix motif RY45_RS01815 PF16921 RY45_RS01815 RY45_RS01820 PF01272 Transcription elongation factor, GreA/GreB, C-term RY45_RS01820 PF03449 Transcription elongation factor, N-terminal RY45_RS01825 PF00072 Response regulator receiver domain RY45_RS01825 PF00486 Transcriptional regulatory protein, C terminal RY45_RS01830 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS01830 PF00672 HAMP domain RY45_RS01830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS01835 PF00892 EamA-like transporter family RY45_RS01840 PF00338 Ribosomal protein S10p/S20e RY45_RS01845 PF00297 Ribosomal protein L3 RY45_RS01850 PF00573 Ribosomal protein L4/L1 family RY45_RS01855 PF00276 Ribosomal protein L23 RY45_RS01860 PF00181 Ribosomal Proteins L2, RNA binding domain RY45_RS01860 PF03947 Ribosomal Proteins L2, C-terminal domain RY45_RS01865 PF00203 Ribosomal protein S19 RY45_RS01870 PF00237 Ribosomal protein L22p/L17e RY45_RS01875 PF00189 Ribosomal protein S3, C-terminal domain RY45_RS01875 PF07650 KH domain RY45_RS01880 PF00252 Ribosomal protein L16p/L10e RY45_RS01885 PF00831 Ribosomal L29 protein RY45_RS01890 PF00366 Ribosomal protein S17 RY45_RS01895 PF00238 Ribosomal protein L14p/L23e RY45_RS01900 PF17136 RY45_RS01900 RY45_RS01905 PF00281 Ribosomal protein L5 RY45_RS01905 PF00673 ribosomal L5P family C-terminus RY45_RS01910 PF00253 Ribosomal protein S14p/S29e RY45_RS01915 PF00410 Ribosomal protein S8 RY45_RS01920 PF00347 Ribosomal protein L6 RY45_RS01925 PF00861 Ribosomal L18p/L5e family RY45_RS01930 PF00333 Ribosomal protein S5, N-terminal domain RY45_RS01930 PF03719 Ribosomal protein S5, C-terminal domain RY45_RS01935 PF00828 Ribosomal protein L18e/L15 RY45_RS01940 PF00344 SecY translocase RY45_RS01945 PF00416 Ribosomal protein S13/S18 RY45_RS01950 PF00411 Ribosomal protein S11 RY45_RS01955 PF00163 Ribosomal protein S4/S9 N-terminal domain RY45_RS01955 PF01479 S4 domain RY45_RS01960 PF01000 RNA polymerase Rpb3/RpoA insert domain RY45_RS01960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RY45_RS01960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RY45_RS01965 PF01196 Ribosomal protein L17 RY45_RS02000 PF13280 RY45_RS02000 RY45_RS02005 PF04247 RY45_RS02005 RY45_RS02010 PF00999 Sodium/hydrogen exchanger family RY45_RS02010 PF02254 TrkA-N domain RY45_RS02015 PF02525 Flavodoxin-like fold RY45_RS02020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS02020 PF03466 LysR substrate binding domain RY45_RS02025 PF00106 short chain dehydrogenase RY45_RS02035 PF04214 RY45_RS02035 RY45_RS02040 PF00326 Prolyl oligopeptidase family RY45_RS02040 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RY45_RS02045 PF16868 RY45_RS02045 RY45_RS02050 PF06808 RY45_RS02050 RY45_RS02050 PF11874 RY45_RS02050 RY45_RS02055 PF07947 RY45_RS02055 RY45_RS02060 PF07690 Major Facilitator Superfamily RY45_RS02065 PF00529 HlyD family secretion protein RY45_RS02065 PF13533 Biotin-lipoyl like RY45_RS02065 PF16576 RY45_RS02065 RY45_RS02070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS02070 PF03466 LysR substrate binding domain RY45_RS02075 PF09413 Domain of unknown function (DUF2007) RY45_RS02080 PF00375 Sodium:dicarboxylate symporter family RY45_RS02085 PF10678 RY45_RS02085 RY45_RS02090 PF01914 RY45_RS02090 RY45_RS02095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS02095 PF03466 LysR substrate binding domain RY45_RS02100 PF02416 mttA/Hcf106 family RY45_RS02105 PF04175 Protein of unknown function (DUF406) RY45_RS02110 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS02110 PF01464 Transglycosylase SLT domain RY45_RS02115 PF13091 PLD-like domain RY45_RS02120 PF00487 RY45_RS02120 RY45_RS02125 PF00440 Bacterial regulatory proteins, tetR family RY45_RS02130 PF07226 RY45_RS02130 RY45_RS02135 PF06611 RY45_RS02135 RY45_RS02140 PF03602 Conserved hypothetical protein 95 RY45_RS02145 PF00448 SRP54-type protein, GTPase domain RY45_RS02145 PF02881 SRP54-type protein, helical bundle domain RY45_RS02150 PF00005 ABC transporter RY45_RS02155 PF02687 RY45_RS02155 RY45_RS02160 PF00140 Sigma-70 factor, region 1 RY45_RS02160 PF04542 Sigma-70 region 2 RY45_RS02160 PF04545 Sigma-70, region 4 RY45_RS02165 PF00484 Carbonic anhydrase RY45_RS02170 PF00392 Bacterial regulatory proteins, gntR family RY45_RS02170 PF07702 UTRA domain RY45_RS02175 PF01979 Amidohydrolase family RY45_RS02180 PF00491 Arginase family RY45_RS02185 PF01175 Urocanase RY45_RS02190 PF00221 Aromatic amino acid lyase RY45_RS02195 PF01699 Sodium/calcium exchanger protein RY45_RS02200 PF00563 EAL domain RY45_RS02205 PF00563 EAL domain RY45_RS02205 PF00990 GGDEF domain RY45_RS02205 PF17157 RY45_RS02205 RY45_RS02210 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS02235 PF00263 RY45_RS02235 RY45_RS02235 PF07655 RY45_RS02235 RY45_RS02240 PF13401 AAA domain RY45_RS02245 PF13432 Tetratricopeptide repeat RY45_RS02245 PF14559 Tetratricopeptide repeat RY45_RS02250 PF00437 Type II/IV secretion system protein RY45_RS02250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RY45_RS02255 PF00482 Type II secretion system (T2SS), protein F RY45_RS02265 PF13633 Prokaryotic N-terminal methylation site RY45_RS02270 PF13544 RY45_RS02270 RY45_RS02275 PF13633 Prokaryotic N-terminal methylation site RY45_RS02280 PF13544 RY45_RS02280 RY45_RS02300 PF06723 MreB/Mbl protein RY45_RS02305 PF04085 rod shape-determining protein MreC RY45_RS02310 PF04093 RY45_RS02310 RY45_RS02315 PF02545 Maf-like protein RY45_RS02320 PF00575 S1 RNA binding domain RY45_RS02320 PF10150 Ribonuclease E/G family RY45_RS02325 PF13116 RY45_RS02325 RY45_RS02325 PF13502 RY45_RS02325 RY45_RS02330 PF07876 Stress responsive A/B Barrel Domain RY45_RS02335 PF00795 Carbon-nitrogen hydrolase RY45_RS02340 PF01523 Putative modulator of DNA gyrase RY45_RS02345 PF01380 SIS domain RY45_RS02345 PF01418 Helix-turn-helix domain, rpiR family RY45_RS02350 PF09829 RY45_RS02350 RY45_RS02355 PF13609 Gram-negative porin RY45_RS02360 PF00367 phosphotransferase system, EIIB RY45_RS02360 PF02378 Phosphotransferase system, EIIC RY45_RS02365 PF13580 SIS domain RY45_RS02370 PF12762 RY45_RS02370 RY45_RS02380 PF01914 RY45_RS02380 RY45_RS02385 PF07690 Major Facilitator Superfamily RY45_RS02390 PF01902 ATP-binding region RY45_RS02395 PF00072 Response regulator receiver domain RY45_RS02395 PF01966 HD domain RY45_RS02400 PF00072 Response regulator receiver domain RY45_RS02400 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS02400 PF01627 Hpt domain RY45_RS02400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS02405 PF07228 Stage II sporulation protein E (SpoIIE) RY45_RS02415 PF01740 STAS domain RY45_RS02415 PF08447 PAS fold RY45_RS02415 PF13426 PAS domain RY45_RS02420 PF12833 Helix-turn-helix domain RY45_RS02430 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RY45_RS02435 PF04228 RY45_RS02435 RY45_RS02445 PF08668 HDOD domain RY45_RS02450 PF13302 Acetyltransferase (GNAT) domain RY45_RS02455 PF00999 Sodium/hydrogen exchanger family RY45_RS02460 PF00809 Pterin binding enzyme RY45_RS02460 PF02310 B12 binding domain RY45_RS02460 PF02574 Homocysteine S-methyltransferase RY45_RS02460 PF02607 B12 binding domain RY45_RS02460 PF02965 Vitamin B12 dependent methionine synthase, activation domain RY45_RS02470 PF08443 RimK-like ATP-grasp domain RY45_RS02475 PF05525 RY45_RS02475 RY45_RS02480 PF00672 HAMP domain RY45_RS02485 PF00072 Response regulator receiver domain RY45_RS02485 PF00486 Transcriptional regulatory protein, C terminal RY45_RS02500 PF01117 Aerolysin toxin RY45_RS02505 PF03994 RY45_RS02505 RY45_RS02510 PF03738 Glutathionylspermidine synthase preATP-grasp RY45_RS02515 PF01964 ThiC family RY45_RS02515 PF13667 ThiC-associated domain RY45_RS02520 PF02581 Thiamine monophosphate synthase/TENI RY45_RS02520 PF08543 Phosphomethylpyrimidine kinase RY45_RS02525 PF00899 ThiF family RY45_RS02530 PF02597 ThiS family RY45_RS02535 PF05690 Thiazole biosynthesis protein ThiG RY45_RS02540 PF04055 Radical SAM superfamily RY45_RS02540 PF06968 Biotin and Thiamin Synthesis associated domain RY45_RS02550 PF13302 Acetyltransferase (GNAT) domain RY45_RS02555 PF13036 Protein of unknown function (DUF3897) RY45_RS02565 PF13673 Acetyltransferase (GNAT) domain RY45_RS02575 PF00990 GGDEF domain RY45_RS02575 PF08448 PAS fold RY45_RS02585 PF06055 RY45_RS02585 RY45_RS02590 PF13505 Outer membrane protein beta-barrel domain RY45_RS02595 PF13302 Acetyltransferase (GNAT) domain RY45_RS02600 PF08803 Putative mono-oxygenase ydhR RY45_RS02605 PF01638 HxlR-like helix-turn-helix RY45_RS02610 PF13673 Acetyltransferase (GNAT) domain RY45_RS02620 PF01757 RY45_RS02620 RY45_RS02625 PF03929 RY45_RS02625 RY45_RS02630 PF00593 TonB dependent receptor RY45_RS02630 PF07715 TonB-dependent Receptor Plug Domain RY45_RS02635 PF04392 ABC transporter substrate binding protein RY45_RS02640 PF13609 Gram-negative porin RY45_RS02645 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RY45_RS02650 PF03692 RY45_RS02650 RY45_RS02655 PF07219 RY45_RS02655 RY45_RS02660 PF04375 RY45_RS02660 RY45_RS02665 PF02602 Uroporphyrinogen-III synthase HemD RY45_RS02670 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RY45_RS02670 PF03900 Porphobilinogen deaminase, C-terminal domain RY45_RS02675 PF01295 RY45_RS02675 RY45_RS02675 PF12633 RY45_RS02675 RY45_RS02680 PF02230 Phospholipase/Carboxylesterase RY45_RS02685 PF01491 Frataxin-like domain RY45_RS02690 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RY45_RS02690 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RY45_RS02695 PF01678 Diaminopimelate epimerase RY45_RS02700 PF04340 Protein of unknown function, DUF484 RY45_RS02705 PF00589 Phage integrase family RY45_RS02705 PF02899 Phage integrase, N-terminal SAM-like domain RY45_RS02710 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS02720 PF00027 Cyclic nucleotide-binding domain RY45_RS02720 PF00924 Mechanosensitive ion channel RY45_RS02730 PF07722 Peptidase C26 RY45_RS02735 PF08282 haloacid dehalogenase-like hydrolase RY45_RS02740 PF03961 RY45_RS02740 RY45_RS02745 PF13437 HlyD family secretion protein RY45_RS02745 PF13533 Biotin-lipoyl like RY45_RS02750 PF00005 ABC transporter RY45_RS02760 PF12698 ABC-2 family transporter protein RY45_RS02765 PF00994 Probable molybdopterin binding domain RY45_RS02770 PF01966 HD domain RY45_RS02770 PF11871 RY45_RS02770 RY45_RS02775 PF04204 Homoserine O-succinyltransferase RY45_RS02780 PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) RY45_RS02785 PF01037 AsnC family RY45_RS02785 PF13412 Winged helix-turn-helix DNA-binding RY45_RS02790 PF00884 Sulfatase RY45_RS02795 PF10387 Protein of unknown function (DUF2442) RY45_RS02800 PF00593 TonB dependent receptor RY45_RS02800 PF07715 TonB-dependent Receptor Plug Domain RY45_RS02805 PF00128 Alpha amylase, catalytic domain RY45_RS02810 PF02308 RY45_RS02810 RY45_RS02815 PF14401 RY45_RS02815 RY45_RS02820 PF00583 Acetyltransferase (GNAT) family RY45_RS02825 PF12292 RY45_RS02825 RY45_RS02830 PF00106 short chain dehydrogenase RY45_RS02835 PF03577 RY45_RS02835 RY45_RS02865 PF01527 Transposase RY45_RS02870 PF00665 Integrase core domain RY45_RS02880 PF05488 PAAR motif RY45_RS02880 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) RY45_RS02900 PF01381 Helix-turn-helix RY45_RS02905 PF05015 Plasmid maintenance system killer protein RY45_RS02910 PF13610 RY45_RS02910 RY45_RS02915 PF00583 Acetyltransferase (GNAT) family RY45_RS02920 PF00809 Pterin binding enzyme RY45_RS02925 PF00893 Small Multidrug Resistance protein RY45_RS02930 PF01909 Nucleotidyltransferase domain RY45_RS02930 PF13427 RY45_RS02930 RY45_RS02935 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS02945 PF13610 RY45_RS02945 RY45_RS02955 PF00440 Bacterial regulatory proteins, tetR family RY45_RS02955 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RY45_RS02960 PF07690 Major Facilitator Superfamily RY45_RS02970 PF00753 Metallo-beta-lactamase superfamily RY45_RS02975 PF13701 RY45_RS02975 RY45_RS02980 PF00465 Iron-containing alcohol dehydrogenase RY45_RS02985 PF00043 Glutathione S-transferase, C-terminal domain RY45_RS02985 PF02798 Glutathione S-transferase, N-terminal domain RY45_RS02990 PF01053 Cys/Met metabolism PLP-dependent enzyme RY45_RS02995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS02995 PF12793 RY45_RS02995 RY45_RS03000 PF13279 Thioesterase-like superfamily RY45_RS03010 PF03280 Proteobacterial lipase chaperone protein RY45_RS03015 PF00561 alpha/beta hydrolase fold RY45_RS03025 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RY45_RS03025 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RY45_RS03030 PF02698 DUF218 domain RY45_RS03035 PF01752 Collagenase RY45_RS03045 PF00419 Fimbrial protein RY45_RS03055 PF00577 Outer membrane usher protein RY45_RS03055 PF13953 PapC C-terminal domain RY45_RS03055 PF13954 PapC N-terminal domain RY45_RS03060 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RY45_RS03060 PF02753 Pili assembly chaperone PapD, C-terminal domain RY45_RS03065 PF00419 Fimbrial protein RY45_RS03070 PF00419 Fimbrial protein RY45_RS03075 PF00486 Transcriptional regulatory protein, C terminal RY45_RS03080 PF00501 AMP-binding enzyme RY45_RS03080 PF13193 AMP-binding enzyme C-terminal domain RY45_RS03085 PF13378 Enolase C-terminal domain-like RY45_RS03090 PF00378 Enoyl-CoA hydratase/isomerase family RY45_RS03095 PF12697 Alpha/beta hydrolase family RY45_RS03100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_RS03100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_RS03100 PF16582 RY45_RS03100 RY45_RS03105 PF00425 chorismate binding enzyme RY45_RS03110 PF01040 UbiA prenyltransferase family RY45_RS03120 PF03413 Peptidase propeptide and YPEB domain RY45_RS03120 PF03929 RY45_RS03120 RY45_RS03130 PF03692 RY45_RS03130 RY45_RS03135 PF00270 DEAD/DEAH box helicase RY45_RS03135 PF00271 Helicase conserved C-terminal domain RY45_RS03135 PF03880 DbpA RNA binding domain RY45_RS03140 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_RS03140 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_RS03145 PF04307 RY45_RS03145 RY45_RS03150 PF01292 Prokaryotic cytochrome b561 RY45_RS03155 PF13670 RY45_RS03155 RY45_RS03160 PF02639 RY45_RS03160 RY45_RS03165 PF01544 CorA-like Mg2+ transporter protein RY45_RS03170 PF00924 Mechanosensitive ion channel RY45_RS03180 PF12339 RY45_RS03180 RY45_RS03185 PF00999 Sodium/hydrogen exchanger family RY45_RS03185 PF02254 TrkA-N domain RY45_RS03190 PF05068 Mannitol repressor RY45_RS03195 PF01232 Mannitol dehydrogenase Rossmann domain RY45_RS03195 PF08125 Mannitol dehydrogenase C-terminal domain RY45_RS03200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS03200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_RS03200 PF02378 Phosphotransferase system, EIIC RY45_RS03205 PF04235 RY45_RS03205 RY45_RS03205 PF07786 RY45_RS03205 RY45_RS03210 PF00440 Bacterial regulatory proteins, tetR family RY45_RS03215 PF00575 S1 RNA binding domain RY45_RS03215 PF00773 RNB domain RY45_RS03215 PF08206 Ribonuclease B OB domain RY45_RS03220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS03220 PF03466 LysR substrate binding domain RY45_RS03225 PF00765 Autoinducer synthetase RY45_RS03230 PF00196 Bacterial regulatory proteins, luxR family RY45_RS03230 PF03472 Autoinducer binding domain RY45_RS03235 PF01810 RY45_RS03235 RY45_RS03240 PF00149 Calcineurin-like phosphoesterase RY45_RS03240 PF02872 5'-nucleotidase, C-terminal domain RY45_RS03245 PF05433 RY45_RS03245 RY45_RS03250 PF00583 Acetyltransferase (GNAT) family RY45_RS03255 PF11756 RY45_RS03255 RY45_RS03260 PF00557 Metallopeptidase family M24 RY45_RS03260 PF01321 Creatinase/Prolidase N-terminal domain RY45_RS03260 PF16188 RY45_RS03260 RY45_RS03260 PF16189 RY45_RS03260 RY45_RS03265 PF00392 Bacterial regulatory proteins, gntR family RY45_RS03265 PF07729 FCD domain RY45_RS03270 PF01293 Phosphoenolpyruvate carboxykinase RY45_RS03275 PF01430 Hsp33 protein RY45_RS03280 PF01479 S4 domain RY45_RS03285 PF11356 Type IV pilus biogenesis RY45_RS03290 PF00263 RY45_RS03290 RY45_RS03290 PF03958 Bacterial type II/III secretion system short domain RY45_RS03295 PF00437 Type II/IV secretion system protein RY45_RS03300 PF00482 Type II secretion system (T2SS), protein F RY45_RS03305 PF08334 Type II secretion system (T2SS), protein G RY45_RS03305 PF13544 RY45_RS03305 RY45_RS03310 PF12019 Type II transport protein GspH RY45_RS03315 PF02501 Type II secretion system (T2SS), protein I RY45_RS03315 PF13633 Prokaryotic N-terminal methylation site RY45_RS03320 PF11612 Type II secretion system (T2SS), protein J RY45_RS03320 PF13633 Prokaryotic N-terminal methylation site RY45_RS03325 PF03934 Type II secretion system (T2SS), protein K RY45_RS03330 PF05134 Type II secretion system (T2SS), protein L RY45_RS03330 PF12693 GspL periplasmic domain RY45_RS03335 PF04612 Type II secretion system (T2SS), protein M RY45_RS03340 PF01203 RY45_RS03340 RY45_RS03345 PF00196 Bacterial regulatory proteins, luxR family RY45_RS03350 PF00579 tRNA synthetases class I (W and Y) RY45_RS03350 PF01479 S4 domain RY45_RS03355 PF00702 haloacid dehalogenase-like hydrolase RY45_RS03360 PF00293 NUDIX domain RY45_RS03365 PF00459 Inositol monophosphatase family RY45_RS03370 PF03222 Tryptophan/tyrosine permease family RY45_RS03375 PF01588 Putative tRNA binding domain RY45_RS03380 PF02311 AraC-like ligand binding domain RY45_RS03380 PF12833 Helix-turn-helix domain RY45_RS03385 PF01340 Met Apo-repressor, MetJ RY45_RS03390 PF01053 Cys/Met metabolism PLP-dependent enzyme RY45_RS03395 PF00696 Amino acid kinase family RY45_RS03395 PF00742 Homoserine dehydrogenase RY45_RS03395 PF03447 Homoserine dehydrogenase, NAD binding domain RY45_RS03400 PF00311 Phosphoenolpyruvate carboxylase RY45_RS03405 PF01546 Peptidase family M20/M25/M40 RY45_RS03405 PF07687 Peptidase dimerisation domain RY45_RS03410 PF01118 Semialdehyde dehydrogenase, NAD binding domain RY45_RS03410 PF02774 Semialdehyde dehydrogenase, dimerisation domain RY45_RS03415 PF00696 Amino acid kinase family RY45_RS03420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_RS03420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_RS03425 PF00764 Arginosuccinate synthase RY45_RS03430 PF00206 Lyase RY45_RS03430 PF14698 Argininosuccinate lyase C-terminal RY45_RS03450 PF06961 RY45_RS03450 RY45_RS03455 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS03455 PF12464 Maltose acetyltransferase RY45_RS03460 PF02308 RY45_RS03460 RY45_RS03460 PF13194 RY45_RS03460 RY45_RS03465 PF13531 Bacterial extracellular solute-binding protein RY45_RS03470 PF06821 Serine hydrolase RY45_RS03475 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS03480 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS03485 PF00005 ABC transporter RY45_RS03485 PF12857 RY45_RS03485 RY45_RS03490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS03490 PF03466 LysR substrate binding domain RY45_RS03495 PF03067 Chitin binding domain RY45_RS03500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS03500 PF00672 HAMP domain RY45_RS03500 PF17200 RY45_RS03500 RY45_RS03505 PF01432 Peptidase family M3 RY45_RS03510 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS03515 PF11308 RY45_RS03515 RY45_RS03525 PF13583 Metallo-peptidase family M12B Reprolysin-like RY45_RS03530 PF03572 Peptidase family S41 RY45_RS03530 PF07676 WD40-like Beta Propeller Repeat RY45_RS03530 PF14684 Tricorn protease C1 domain RY45_RS03535 PF03734 L,D-transpeptidase catalytic domain RY45_RS03540 PF03591 RY45_RS03540 RY45_RS03545 PF05437 RY45_RS03545 RY45_RS03550 PF11230 RY45_RS03550 RY45_RS03555 PF04055 Radical SAM superfamily RY45_RS03555 PF13353 4Fe-4S single cluster domain RY45_RS03560 PF08850 RY45_RS03560 RY45_RS03565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS03565 PF03466 LysR substrate binding domain RY45_RS03570 PF00155 Aminotransferase class I and II RY45_RS03575 PF02583 Metal-sensitive transcriptional repressor RY45_RS03580 PF01545 Cation efflux family RY45_RS03590 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_RS03590 PF03714 Bacterial pullanase-associated domain RY45_RS03590 PF11852 Domain of unknown function (DUF3372) RY45_RS03595 PF00122 E1-E2 ATPase RY45_RS03595 PF00403 Heavy-metal-associated domain RY45_RS03595 PF00702 haloacid dehalogenase-like hydrolase RY45_RS03600 PF08534 Redoxin RY45_RS03610 PF00270 DEAD/DEAH box helicase RY45_RS03610 PF00271 Helicase conserved C-terminal domain RY45_RS03625 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_RS03630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS03630 PF08447 PAS fold RY45_RS03635 PF02517 CAAX protease self-immunity RY45_RS03645 PF06062 RY45_RS03645 RY45_RS03650 PF05651 RY45_RS03650 RY45_RS03650 PF13556 PucR C-terminal helix-turn-helix domain RY45_RS03655 PF02447 RY45_RS03655 RY45_RS03660 PF02595 Glycerate kinase family RY45_RS03665 PF07298 RY45_RS03665 RY45_RS03670 PF00255 Glutathione peroxidase RY45_RS03675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS03675 PF03466 LysR substrate binding domain RY45_RS03680 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_RS03680 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_RS03680 PF07670 Nucleoside recognition RY45_RS03685 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RY45_RS03685 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RY45_RS03690 PF00472 RF-1 domain RY45_RS03695 PF00543 Nitrogen regulatory protein P-II RY45_RS03700 PF13343 Bacterial extracellular solute-binding protein RY45_RS03705 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS03710 PF00005 ABC transporter RY45_RS03715 PF04261 Dyp-type peroxidase family RY45_RS03720 PF01316 Arginine repressor, DNA binding domain RY45_RS03720 PF02863 Arginine repressor, C-terminal domain RY45_RS03725 PF00005 ABC transporter RY45_RS03730 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS03735 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS03740 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS03745 PF00056 lactate/malate dehydrogenase, NAD binding domain RY45_RS03745 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RY45_RS03755 PF08238 Sel1 repeat RY45_RS03760 PF00042 Globin RY45_RS03760 PF00175 Oxidoreductase NAD-binding domain RY45_RS03760 PF00970 Oxidoreductase FAD-binding domain RY45_RS03765 PF02082 Transcriptional regulator RY45_RS03770 PF00571 CBS domain RY45_RS03770 PF01595 RY45_RS03770 RY45_RS03770 PF03471 Transporter associated domain RY45_RS03775 PF01578 RY45_RS03775 RY45_RS03780 PF00448 SRP54-type protein, GTPase domain RY45_RS03780 PF02881 SRP54-type protein, helical bundle domain RY45_RS03780 PF02978 Signal peptide binding domain RY45_RS03785 PF00886 Ribosomal protein S16 RY45_RS03790 PF01782 RimM N-terminal domain RY45_RS03790 PF05239 PRC-barrel domain RY45_RS03795 PF01746 tRNA (Guanine-1)-methyltransferase RY45_RS03800 PF01245 Ribosomal protein L19 RY45_RS03810 PF02976 DNA mismatch repair enzyme MutH RY45_RS03820 PF00293 NUDIX domain RY45_RS03825 PF00391 PEP-utilising enzyme, mobile domain RY45_RS03825 PF01590 GAF domain RY45_RS03825 PF02896 PEP-utilising enzyme, TIM barrel domain RY45_RS03825 PF05524 PEP-utilising enzyme, N-terminal RY45_RS03830 PF01790 RY45_RS03830 RY45_RS03835 PF00303 Thymidylate synthase RY45_RS03840 PF06965 Na+/H+ antiporter 1 RY45_RS03850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS03850 PF03466 LysR substrate binding domain RY45_RS03855 PF01022 Bacterial regulatory protein, arsR family RY45_RS03860 PF01649 Ribosomal protein S20 RY45_RS03865 PF03023 RY45_RS03865 RY45_RS03870 PF01687 Riboflavin kinase RY45_RS03870 PF06574 FAD synthetase RY45_RS03875 PF00133 tRNA synthetases class I (I, L, M and V) RY45_RS03875 PF06827 Zinc finger found in FPG and IleRS RY45_RS03875 PF08264 Anticodon-binding domain of tRNA RY45_RS03880 PF01252 RY45_RS03880 RY45_RS03885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_RS03890 PF02401 LytB protein RY45_RS03895 PF12019 Type II transport protein GspH RY45_RS03895 PF13633 Prokaryotic N-terminal methylation site RY45_RS03905 PF16074 RY45_RS03905 RY45_RS03910 PF13681 RY45_RS03910 RY45_RS03910 PF14341 RY45_RS03910 RY45_RS03915 PF05567 Neisseria PilC beta-propeller domain RY45_RS03920 PF07963 Prokaryotic N-terminal methylation motif RY45_RS03920 PF16732 RY45_RS03920 RY45_RS03925 PF13544 RY45_RS03925 RY45_RS03925 PF16732 RY45_RS03925 RY45_RS03930 PF12019 Type II transport protein GspH RY45_RS03930 PF13633 Prokaryotic N-terminal methylation site RY45_RS03950 PF00795 Carbon-nitrogen hydrolase RY45_RS03950 PF02540 NAD synthase RY45_RS03955 PF00543 Nitrogen regulatory protein P-II RY45_RS03965 PF02664 S-Ribosylhomocysteinase (LuxS) RY45_RS03970 PF00990 GGDEF domain RY45_RS03975 PF00575 S1 RNA binding domain RY45_RS03975 PF00773 RNB domain RY45_RS03975 PF08206 Ribonuclease B OB domain RY45_RS03975 PF08461 Ribonuclease R winged-helix domain RY45_RS03980 PF11665 RY45_RS03980 RY45_RS03985 PF00588 SpoU rRNA Methylase family RY45_RS03985 PF08032 RNA 2'-O ribose methyltransferase substrate binding RY45_RS03990 PF00027 Cyclic nucleotide-binding domain RY45_RS03995 PF13673 Acetyltransferase (GNAT) domain RY45_RS04000 PF00892 EamA-like transporter family RY45_RS04005 PF00892 EamA-like transporter family RY45_RS04015 PF01566 RY45_RS04015 RY45_RS04020 PF01250 Ribosomal protein S6 RY45_RS04025 PF01084 Ribosomal protein S18 RY45_RS04030 PF01281 Ribosomal protein L9, N-terminal domain RY45_RS04030 PF03948 Ribosomal protein L9, C-terminal domain RY45_RS04035 PF00175 Oxidoreductase NAD-binding domain RY45_RS04050 PF08240 Alcohol dehydrogenase GroES-like domain RY45_RS04050 PF13602 Zinc-binding dehydrogenase RY45_RS04055 PF09335 RY45_RS04055 RY45_RS04060 PF00675 Insulinase (Peptidase family M16) RY45_RS04060 PF05193 Peptidase M16 inactive domain RY45_RS04065 PF04262 Glutamate-cysteine ligase RY45_RS04070 PF14486 Domain of unknown function (DUF4432) RY45_RS04075 PF00501 AMP-binding enzyme RY45_RS04085 PF00583 Acetyltransferase (GNAT) family RY45_RS04090 PF03603 DNA polymerase III psi subunit RY45_RS04095 PF07728 AAA domain (dynein-related subfamily) RY45_RS04095 PF12592 Protein of unknown function (DUF3763) RY45_RS04100 PF05762 VWA domain containing CoxE-like protein RY45_RS04105 PF00990 GGDEF domain RY45_RS04110 PF00009 Elongation factor Tu GTP binding domain RY45_RS04110 PF03144 Elongation factor Tu domain 2 RY45_RS04110 PF16658 RY45_RS04110 RY45_RS04115 PF12680 SnoaL-like domain RY45_RS04120 PF01047 MarR family RY45_RS04125 PF02627 Carboxymuconolactone decarboxylase family RY45_RS04135 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_RS04140 PF00440 Bacterial regulatory proteins, tetR family RY45_RS04145 PF04480 Protein of unknown function (DUF559) RY45_RS04150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS04150 PF03466 LysR substrate binding domain RY45_RS04155 PF04371 Porphyromonas-type peptidyl-arginine deiminase RY45_RS04160 PF01425 Amidase RY45_RS04165 PF05932 Tir chaperone protein (CesT) family RY45_RS04175 PF00753 Metallo-beta-lactamase superfamily RY45_RS04190 PF00270 DEAD/DEAH box helicase RY45_RS04190 PF00271 Helicase conserved C-terminal domain RY45_RS04195 PF05643 Putative bacterial lipoprotein (DUF799) RY45_RS04200 PF16068 RY45_RS04200 RY45_RS04205 PF03783 Curli production assembly/transport component CsgG RY45_RS04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS04210 PF03466 LysR substrate binding domain RY45_RS04215 PF07690 Major Facilitator Superfamily RY45_RS04225 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase RY45_RS04230 PF03150 Di-haem cytochrome c peroxidase RY45_RS04240 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS04245 PF00445 Ribonuclease T2 family RY45_RS04255 PF03060 Nitronate monooxygenase RY45_RS04290 PF00293 NUDIX domain RY45_RS04295 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS04295 PF00672 HAMP domain RY45_RS04295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS04300 PF00072 Response regulator receiver domain RY45_RS04300 PF00486 Transcriptional regulatory protein, C terminal RY45_RS04305 PF16576 RY45_RS04305 RY45_RS04310 PF00005 ABC transporter RY45_RS04310 PF02687 RY45_RS04310 RY45_RS04310 PF12704 MacB-like periplasmic core domain RY45_RS04315 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS04320 PF00005 ABC transporter RY45_RS04325 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS04330 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS04335 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS04340 PF00326 Prolyl oligopeptidase family RY45_RS04340 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RY45_RS04350 PF05170 RY45_RS04350 RY45_RS04355 PF13508 Acetyltransferase (GNAT) domain RY45_RS04360 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS04365 PF03710 Glutamate-ammonia ligase adenylyltransferase RY45_RS04365 PF08335 GlnD PII-uridylyltransferase RY45_RS04370 PF00583 Acetyltransferase (GNAT) family RY45_RS04375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS04375 PF00672 HAMP domain RY45_RS04380 PF07885 Ion channel RY45_RS04385 PF08239 Bacterial SH3 domain RY45_RS04390 PF00171 Aldehyde dehydrogenase family RY45_RS04390 PF01619 Proline dehydrogenase RY45_RS04390 PF14850 DNA-binding domain of Proline dehydrogenase RY45_RS04395 PF00293 NUDIX domain RY45_RS04395 PF09297 NADH pyrophosphatase zinc ribbon domain RY45_RS04405 PF00480 ROK family RY45_RS04410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_RS04410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RY45_RS04415 PF00162 Phosphoglycerate kinase RY45_RS04420 PF01116 Fructose-bisphosphate aldolase class-II RY45_RS04425 PF01266 FAD dependent oxidoreductase RY45_RS04435 PF02683 RY45_RS04435 RY45_RS04435 PF11412 Disulphide bond corrector protein DsbC RY45_RS04435 PF13899 Thioredoxin-like RY45_RS04440 PF03091 CutA1 divalent ion tolerance protein RY45_RS04450 PF05232 RY45_RS04450 RY45_RS04455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS04455 PF03466 LysR substrate binding domain RY45_RS04460 PF01571 Aminomethyltransferase folate-binding domain RY45_RS04465 PF03937 Flavinator of succinate dehydrogenase RY45_RS04475 PF00890 FAD binding domain RY45_RS04475 PF02910 Fumarate reductase flavoprotein C-term RY45_RS04480 PF04542 Sigma-70 region 2 RY45_RS04480 PF08281 Sigma-70, region 4 RY45_RS04485 PF03872 Anti sigma-E protein RseA, N-terminal domain RY45_RS04485 PF03873 Anti sigma-E protein RseA, C-terminal domain RY45_RS04490 PF03888 MucB/RseB family RY45_RS04490 PF17188 RY45_RS04490 RY45_RS04495 PF04246 RY45_RS04495 RY45_RS04500 PF00009 Elongation factor Tu GTP binding domain RY45_RS04500 PF00679 Elongation factor G C-terminus RY45_RS04500 PF03144 Elongation factor Tu domain 2 RY45_RS04500 PF06421 GTP-binding protein LepA C-terminus RY45_RS04505 PF00717 Peptidase S24-like RY45_RS04505 PF10502 Signal peptidase, peptidase S26 RY45_RS04510 PF00035 Double-stranded RNA binding motif RY45_RS04510 PF14622 Ribonuclease-III-like RY45_RS04515 PF01926 50S ribosome-binding GTPase RY45_RS04515 PF07650 KH domain RY45_RS04520 PF02565 Recombination protein O C terminal RY45_RS04520 PF11967 Recombination protein O N terminal RY45_RS04525 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RY45_RS04535 PF01116 Fructose-bisphosphate aldolase class-II RY45_RS04540 PF01979 Amidohydrolase family RY45_RS04545 PF03610 PTS system fructose IIA component RY45_RS04550 PF03613 RY45_RS04550 RY45_RS04555 PF03609 RY45_RS04555 RY45_RS04560 PF03830 PTS system sorbose subfamily IIB component RY45_RS04565 PF01380 SIS domain RY45_RS04570 PF08013 Tagatose 6 phosphate kinase RY45_RS04575 PF00455 RY45_RS04575 RY45_RS04575 PF08220 DeoR-like helix-turn-helix domain RY45_RS04580 PF01471 Putative peptidoglycan binding domain RY45_RS04580 PF01510 N-acetylmuramoyl-L-alanine amidase RY45_RS04585 PF07308 RY45_RS04585 RY45_RS04590 PF00072 Response regulator receiver domain RY45_RS04590 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS04590 PF00672 HAMP domain RY45_RS04590 PF01627 Hpt domain RY45_RS04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS04590 PF09984 RY45_RS04590 RY45_RS04595 PF01938 TRAM domain RY45_RS04595 PF05958 tRNA (Uracil-5-)-methyltransferase RY45_RS04600 PF02824 TGS domain RY45_RS04600 PF04607 Region found in RelA / SpoT proteins RY45_RS04600 PF13291 ACT domain RY45_RS04600 PF13328 HD domain RY45_RS04605 PF03819 MazG nucleotide pyrophosphohydrolase domain RY45_RS04610 PF00117 Glutamine amidotransferase class-I RY45_RS04610 PF06418 CTP synthase N-terminus RY45_RS04615 PF00113 Enolase, C-terminal TIM barrel domain RY45_RS04615 PF03952 Enolase, N-terminal domain RY45_RS04620 PF04977 Septum formation initiator RY45_RS04625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RY45_RS04630 PF02542 YgbB family RY45_RS04635 PF01142 tRNA pseudouridine synthase D (TruD) RY45_RS04640 PF01975 Survival protein SurE RY45_RS04645 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RY45_RS04650 PF09335 RY45_RS04650 RY45_RS04655 PF01476 LysM domain RY45_RS04655 PF01551 Peptidase family M23 RY45_RS04660 PF00140 Sigma-70 factor, region 1 RY45_RS04660 PF04539 Sigma-70 region 3 RY45_RS04660 PF04542 Sigma-70 region 2 RY45_RS04660 PF04545 Sigma-70, region 4 RY45_RS04665 PF00814 Glycoprotease family RY45_RS04670 PF09424 Yqey-like protein RY45_RS04675 PF01807 CHC2 zinc finger RY45_RS04675 PF08275 DNA primase catalytic core, N-terminal domain RY45_RS04675 PF08278 DNA primase DnaG DnaB-binding RY45_RS04675 PF10410 DnaB-helicase binding domain of primase RY45_RS04675 PF13662 Toprim domain RY45_RS04680 PF00140 Sigma-70 factor, region 1 RY45_RS04680 PF03979 Sigma-70 factor, region 1 RY45_RS04680 PF04539 Sigma-70 region 3 RY45_RS04680 PF04542 Sigma-70 region 2 RY45_RS04680 PF04545 Sigma-70, region 4 RY45_RS04680 PF04546 Sigma-70, non-essential region RY45_RS04695 PF00128 Alpha amylase, catalytic domain RY45_RS04695 PF00801 PKD domain RY45_RS04695 PF02806 Alpha amylase, C-terminal all-beta domain RY45_RS04700 PF01292 Prokaryotic cytochrome b561 RY45_RS04705 PF07361 Cytochrome b562 RY45_RS04710 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RY45_RS04710 PF02843 Phosphoribosylglycinamide synthetase, C domain RY45_RS04710 PF02844 Phosphoribosylglycinamide synthetase, N domain RY45_RS04715 PF01808 AICARFT/IMPCHase bienzyme RY45_RS04715 PF02142 MGS-like domain RY45_RS04720 PF00376 MerR family regulatory protein RY45_RS04720 PF09278 MerR, DNA binding RY45_RS04725 PF01872 RibD C-terminal domain RY45_RS04730 PF03889 RY45_RS04730 RY45_RS04735 PF04055 Radical SAM superfamily RY45_RS04735 PF06969 HemN C-terminal domain RY45_RS04740 PF01725 Ham1 family RY45_RS04745 PF07690 Major Facilitator Superfamily RY45_RS04750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RY45_RS04750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RY45_RS04760 PF13302 Acetyltransferase (GNAT) domain RY45_RS04765 PF13302 Acetyltransferase (GNAT) domain RY45_RS04770 PF01447 Thermolysin metallopeptidase, catalytic domain RY45_RS04770 PF02868 Thermolysin metallopeptidase, alpha-helical domain RY45_RS04770 PF03413 Peptidase propeptide and YPEB domain RY45_RS04770 PF04151 Bacterial pre-peptidase C-terminal domain RY45_RS04770 PF07504 Fungalysin/Thermolysin Propeptide Motif RY45_RS04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS04775 PF03466 LysR substrate binding domain RY45_RS04780 PF07690 Major Facilitator Superfamily RY45_RS04785 PF00267 Gram-negative porin RY45_RS04790 PF03605 RY45_RS04790 RY45_RS04795 PF00206 Lyase RY45_RS04795 PF10415 Fumarase C C-terminus RY45_RS04800 PF04186 RY45_RS04800 RY45_RS04805 PF01554 MatE RY45_RS04810 PF00166 Chaperonin 10 Kd subunit RY45_RS04815 PF00118 TCP-1/cpn60 chaperonin family RY45_RS04825 PF00563 EAL domain RY45_RS04825 PF00990 GGDEF domain RY45_RS04830 PF00849 RNA pseudouridylate synthase RY45_RS04835 PF00176 SNF2 family N-terminal domain RY45_RS04835 PF00271 Helicase conserved C-terminal domain RY45_RS04835 PF12137 RNA polymerase recycling family C-terminal RY45_RS04870 PF02867 Ribonucleotide reductase, barrel domain RY45_RS04880 PF02562 PhoH-like protein RY45_RS04880 PF13638 PIN domain RY45_RS04885 PF00005 ABC transporter RY45_RS04890 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS04895 PF13416 Bacterial extracellular solute-binding protein RY45_RS04900 PF07238 PilZ domain RY45_RS04910 PF00694 Aconitase C-terminal domain RY45_RS04915 PF00330 Aconitase family (aconitate hydratase) RY45_RS04920 PF00180 Isocitrate/isopropylmalate dehydrogenase RY45_RS04925 PF00682 HMGL-like RY45_RS04925 PF08502 LeuA allosteric (dimerisation) domain RY45_RS04930 PF00440 Bacterial regulatory proteins, tetR family RY45_RS04935 PF01569 PAP2 superfamily RY45_RS04940 PF13528 Glycosyl transferase family 1 RY45_RS04945 PF00205 Thiamine pyrophosphate enzyme, central domain RY45_RS04945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_RS04945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_RS04950 PF10369 Small subunit of acetolactate synthase RY45_RS04950 PF13710 ACT domain RY45_RS04955 PF01515 Phosphate acetyl/butaryl transferase RY45_RS04955 PF07085 DRTGG domain RY45_RS04955 PF13500 AAA domain RY45_RS04960 PF00871 Acetokinase family RY45_RS04965 PF04217 RY45_RS04965 RY45_RS04970 PF03887 YfbU domain RY45_RS04975 PF00578 AhpC/TSA family RY45_RS04980 PF13740 ACT domain RY45_RS04985 PF00701 Dihydrodipicolinate synthetase family RY45_RS04990 PF06804 NlpB/DapX lipoprotein RY45_RS04995 PF01259 SAICAR synthetase RY45_RS05000 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS05005 PF03466 LysR substrate binding domain RY45_RS05010 PF09829 RY45_RS05010 RY45_RS05015 PF01230 HIT domain RY45_RS05020 PF11813 RY45_RS05020 RY45_RS05025 PF11059 RY45_RS05025 RY45_RS05030 PF00072 Response regulator receiver domain RY45_RS05030 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS05030 PF01627 Hpt domain RY45_RS05030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS05030 PF08448 PAS fold RY45_RS05035 PF01966 HD domain RY45_RS05035 PF13286 Phosphohydrolase-associated domain RY45_RS05045 PF00072 Response regulator receiver domain RY45_RS05045 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS05045 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS05045 PF01627 Hpt domain RY45_RS05045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS05045 PF08448 PAS fold RY45_RS05050 PF00072 Response regulator receiver domain RY45_RS05050 PF00563 EAL domain RY45_RS05055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS05055 PF00672 HAMP domain RY45_RS05060 PF02357 Transcription termination factor nusG RY45_RS05065 PF03180 NLPA lipoprotein RY45_RS05070 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS05075 PF00005 ABC transporter RY45_RS05075 PF09383 NIL domain RY45_RS05090 PF00480 ROK family RY45_RS05095 PF08331 RY45_RS05095 RY45_RS05095 PF13484 RY45_RS05095 RY45_RS05100 PF01256 Carbohydrate kinase RY45_RS05100 PF03853 YjeF-related protein N-terminus RY45_RS05105 PF02367 Uncharacterised P-loop hydrolase UPF0079 RY45_RS05110 PF01476 LysM domain RY45_RS05110 PF01520 N-acetylmuramoyl-L-alanine amidase RY45_RS05110 PF11741 AMIN domain RY45_RS05115 PF01119 DNA mismatch repair protein, C-terminal domain RY45_RS05115 PF08676 MutL C terminal dimerisation domain RY45_RS05115 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS05120 PF01715 IPP transferase RY45_RS05130 PF01926 50S ribosome-binding GTPase RY45_RS05130 PF13167 RY45_RS05130 RY45_RS05130 PF16360 RY45_RS05130 RY45_RS05135 PF01145 SPFH domain / Band 7 family RY45_RS05135 PF12221 RY45_RS05135 RY45_RS05140 PF01145 SPFH domain / Band 7 family RY45_RS05145 PF09838 RY45_RS05145 RY45_RS05150 PF00348 Polyprenyl synthetase RY45_RS05160 PF01016 Ribosomal L27 protein RY45_RS05165 PF01018 GTP1/OBG RY45_RS05165 PF01926 50S ribosome-binding GTPase RY45_RS05170 PF07670 Nucleoside recognition RY45_RS05175 PF00501 AMP-binding enzyme RY45_RS05175 PF13193 AMP-binding enzyme C-terminal domain RY45_RS05190 PF00672 HAMP domain RY45_RS05190 PF13487 HD domain RY45_RS05195 PF00296 Luciferase-like monooxygenase RY45_RS05200 PF01381 Helix-turn-helix RY45_RS05200 PF13239 RY45_RS05200 RY45_RS05210 PF00149 Calcineurin-like phosphoesterase RY45_RS05215 PF04379 Protein of unknown function (DUF525) RY45_RS05220 PF00398 Ribosomal RNA adenine dimethylase RY45_RS05225 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RY45_RS05230 PF00639 PPIC-type PPIASE domain RY45_RS05230 PF09312 SurA N-terminal domain RY45_RS05235 PF03968 OstA-like protein RY45_RS05235 PF04453 Organic solvent tolerance protein RY45_RS05240 PF01636 Phosphotransferase enzyme family RY45_RS05245 PF00483 Nucleotidyl transferase RY45_RS05250 PF00226 DnaJ domain RY45_RS05250 PF05099 Tellurite resistance protein TerB RY45_RS05255 PF00860 Permease family RY45_RS05265 PF00005 ABC transporter RY45_RS05265 PF12848 ABC transporter RY45_RS05270 PF00027 Cyclic nucleotide-binding domain RY45_RS05275 PF10688 RY45_RS05275 RY45_RS05280 PF01048 Phosphorylase superfamily RY45_RS05285 PF01464 Transglycosylase SLT domain RY45_RS05290 PF01391 Collagen triple helix repeat (20 copies) RY45_RS05300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS05300 PF03466 LysR substrate binding domain RY45_RS05305 PF01048 Phosphorylase superfamily RY45_RS05310 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_RS05310 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_RS05310 PF07670 Nucleoside recognition RY45_RS05315 PF01791 DeoC/LacD family aldolase RY45_RS05320 PF00892 EamA-like transporter family RY45_RS05325 PF01370 NAD dependent epimerase/dehydratase family RY45_RS05330 PF02588 RY45_RS05330 RY45_RS05335 PF00005 ABC transporter RY45_RS05340 PF01032 FecCD transport family RY45_RS05345 PF01497 Periplasmic binding protein RY45_RS05350 PF06228 Haem utilisation ChuX/HutX RY45_RS05355 PF01243 Pyridoxamine 5'-phosphate oxidase RY45_RS05365 PF00857 Isochorismatase family RY45_RS05370 PF04187 Protein of unknown function, DUF399 RY45_RS05375 PF00593 TonB dependent receptor RY45_RS05375 PF07715 TonB-dependent Receptor Plug Domain RY45_RS05380 PF12832 MFS_1 like family RY45_RS05385 PF13443 Cro/C1-type HTH DNA-binding domain RY45_RS05390 PF11188 RY45_RS05390 RY45_RS05395 PF00072 Response regulator receiver domain RY45_RS05395 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS05395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS05395 PF12860 RY45_RS05395 RY45_RS05400 PF00704 Glycosyl hydrolases family 18 RY45_RS05400 PF02839 Carbohydrate binding domain RY45_RS05400 PF08329 Chitinase A, N-terminal domain RY45_RS05405 PF10462 Peptidase M66 RY45_RS05410 PF00182 Chitinase class I RY45_RS05410 PF02839 Carbohydrate binding domain RY45_RS05415 PF08241 Methyltransferase domain RY45_RS05420 PF00027 Cyclic nucleotide-binding domain RY45_RS05420 PF00325 Bacterial regulatory proteins, crp family RY45_RS05425 PF02566 OsmC-like protein RY45_RS05430 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme RY45_RS05435 PF13590 Domain of unknown function (DUF4136) RY45_RS05440 PF00485 Phosphoribulokinase / Uridine kinase family RY45_RS05445 PF00893 Small Multidrug Resistance protein RY45_RS05450 PF00892 EamA-like transporter family RY45_RS05455 PF02366 RY45_RS05455 RY45_RS05460 PF01522 Polysaccharide deacetylase RY45_RS05465 PF00551 Formyl transferase RY45_RS05465 PF01370 NAD dependent epimerase/dehydratase family RY45_RS05465 PF02911 Formyl transferase, C-terminal domain RY45_RS05470 PF00535 Glycosyl transferase family 2 RY45_RS05475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RY45_RS05480 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RY45_RS05480 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RY45_RS05480 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RY45_RS05485 PF06794 Uncharacterised protein family (UPF0270) RY45_RS05490 PF00990 GGDEF domain RY45_RS05490 PF17178 RY45_RS05490 RY45_RS05495 PF00561 alpha/beta hydrolase fold RY45_RS05500 PF00072 Response regulator receiver domain RY45_RS05500 PF01584 CheW-like domain RY45_RS05510 PF09526 RY45_RS05510 RY45_RS05515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_RS05520 PF04102 SlyX RY45_RS05525 PF13360 PQQ-like domain RY45_RS05530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_RS05530 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RY45_RS05535 PF00072 Response regulator receiver domain RY45_RS05535 PF00158 Sigma-54 interaction domain RY45_RS05535 PF02954 Bacterial regulatory protein, Fis family RY45_RS05540 PF13424 Tetratricopeptide repeat RY45_RS05550 PF11169 RY45_RS05550 RY45_RS05555 PF00149 Calcineurin-like phosphoesterase RY45_RS05555 PF02872 5'-nucleotidase, C-terminal domain RY45_RS05560 PF00563 EAL domain RY45_RS05560 PF12792 RY45_RS05560 RY45_RS05565 PF04280 Tim44-like domain RY45_RS05570 PF00772 DnaB-like helicase N terminal domain RY45_RS05570 PF03796 DnaB-like helicase C terminal domain RY45_RS05575 PF00842 Alanine racemase, C-terminal domain RY45_RS05575 PF01168 Alanine racemase, N-terminal domain RY45_RS05580 PF12838 4Fe-4S dicluster domain RY45_RS05585 PF01136 RY45_RS05585 RY45_RS05585 PF16325 RY45_RS05585 RY45_RS05590 PF00563 EAL domain RY45_RS05600 PF04449 CS1 type fimbrial major subunit RY45_RS05605 PF15976 RY45_RS05605 RY45_RS05605 PF16967 RY45_RS05605 RY45_RS05610 PF00072 Response regulator receiver domain RY45_RS05610 PF00196 Bacterial regulatory proteins, luxR family RY45_RS05615 PF00072 Response regulator receiver domain RY45_RS05615 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS05615 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS05615 PF01627 Hpt domain RY45_RS05615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS05640 PF00266 Aminotransferase class-V RY45_RS05645 PF00072 Response regulator receiver domain RY45_RS05645 PF01339 CheB methylesterase RY45_RS05650 PF03975 CheD chemotactic sensory transduction RY45_RS05655 PF01739 CheR methyltransferase, SAM binding domain RY45_RS05655 PF03705 CheR methyltransferase, all-alpha domain RY45_RS05660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS05660 PF13426 PAS domain RY45_RS05665 PF01584 CheW-like domain RY45_RS05670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS05670 PF00672 HAMP domain RY45_RS05670 PF12729 RY45_RS05670 RY45_RS05675 PF01584 CheW-like domain RY45_RS05675 PF01627 Hpt domain RY45_RS05675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS05675 PF02895 Signal transducing histidine kinase, homodimeric domain RY45_RS05680 PF13466 STAS domain RY45_RS05685 PF00072 Response regulator receiver domain RY45_RS05690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS05695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RY45_RS05695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_RS05700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS05700 PF03466 LysR substrate binding domain RY45_RS05705 PF01810 RY45_RS05705 RY45_RS05710 PF01136 RY45_RS05710 RY45_RS05710 PF12392 RY45_RS05710 RY45_RS05715 PF04266 ASCH domain RY45_RS05720 PF06906 RY45_RS05720 RY45_RS05730 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RY45_RS05730 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RY45_RS05735 PF00730 HhH-GPD superfamily base excision DNA repair protein RY45_RS05735 PF02805 Metal binding domain of Ada RY45_RS05735 PF06029 AlkA N-terminal domain RY45_RS05735 PF12833 Helix-turn-helix domain RY45_RS05745 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RY45_RS05750 PF01713 Smr domain RY45_RS05755 PF01963 RY45_RS05755 RY45_RS05760 PF08921 Domain of unknown function (DUF1904) RY45_RS05765 PF00106 short chain dehydrogenase RY45_RS05770 PF03573 outer membrane porin, OprD family RY45_RS05775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS05775 PF00672 HAMP domain RY45_RS05780 PF00892 EamA-like transporter family RY45_RS05785 PF00596 Class II Aldolase and Adducin N-terminal domain RY45_RS05790 PF00465 Iron-containing alcohol dehydrogenase RY45_RS05805 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RY45_RS05805 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RY45_RS05810 PF06134 L-rhamnose isomerase (RhaA) RY45_RS05815 PF06379 RY45_RS05815 RY45_RS05820 PF05336 Domain of unknown function (DUF718) RY45_RS05830 PF16538 RY45_RS05830 RY45_RS05830 PF16539 RY45_RS05830 RY45_RS05830 PF16548 RY45_RS05830 RY45_RS05840 PF02169 LPP20 lipoprotein RY45_RS05845 PF00800 Prephenate dehydratase RY45_RS05845 PF01817 Chorismate mutase type II RY45_RS05850 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS05865 PF11355 RY45_RS05865 RY45_RS05875 PF04463 RY45_RS05875 RY45_RS05875 PF08349 RY45_RS05875 RY45_RS05880 PF13411 MerR HTH family regulatory protein RY45_RS05885 PF00875 DNA photolyase RY45_RS05885 PF03441 FAD binding domain of DNA photolyase RY45_RS05890 PF12680 SnoaL-like domain RY45_RS05895 PF00106 short chain dehydrogenase RY45_RS05900 PF01593 Flavin containing amine oxidoreductase RY45_RS05905 PF07103 RY45_RS05905 RY45_RS05910 PF02353 Mycolic acid cyclopropane synthetase RY45_RS05915 PF11086 RY45_RS05915 RY45_RS05920 PF09493 RY45_RS05920 RY45_RS05925 PF16036 RY45_RS05925 RY45_RS05930 PF12915 RY45_RS05930 RY45_RS05935 PF00210 Ferritin-like domain RY45_RS05940 PF03063 Prismane/CO dehydrogenase family RY45_RS05945 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_RS05945 PF00175 Oxidoreductase NAD-binding domain RY45_RS05945 PF00970 Oxidoreductase FAD-binding domain RY45_RS05950 PF16363 RY45_RS05950 RY45_RS05955 PF13462 Thioredoxin RY45_RS05965 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RY45_RS05965 PF08479 POTRA domain, ShlB-type RY45_RS05970 PF05594 RY45_RS05970 RY45_RS05970 PF05860 haemagglutination activity domain RY45_RS05980 PF04830 RY45_RS05980 RY45_RS05980 PF13332 RY45_RS05980 RY45_RS06005 PF04829 RY45_RS06005 RY45_RS06005 PF13332 RY45_RS06005 RY45_RS06015 PF00196 Bacterial regulatory proteins, luxR family RY45_RS06015 PF03472 Autoinducer binding domain RY45_RS06020 PF05638 Protein of unknown function (DUF796) RY45_RS06025 PF05954 Phage late control gene D protein (GPD) RY45_RS06030 PF13503 RY45_RS06030 RY45_RS06050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS06050 PF03466 LysR substrate binding domain RY45_RS06055 PF03306 Alpha-acetolactate decarboxylase RY45_RS06060 PF00205 Thiamine pyrophosphate enzyme, central domain RY45_RS06060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_RS06060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_RS06065 PF01965 DJ-1/PfpI family RY45_RS06070 PF02558 Ketopantoate reductase PanE/ApbA RY45_RS06070 PF08546 Ketopantoate reductase PanE/ApbA C terminal RY45_RS06075 PF04461 Protein of unknown function (DUF520) RY45_RS06080 PF03502 Nucleoside-specific channel-forming protein, Tsx RY45_RS06085 PF13000 RY45_RS06085 RY45_RS06095 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RY45_RS06100 PF03923 RY45_RS06100 RY45_RS06105 PF05175 Methyltransferase small domain RY45_RS06110 PF01722 BolA-like protein RY45_RS06115 PF05896 RY45_RS06115 RY45_RS06115 PF11973 RY45_RS06115 RY45_RS06120 PF03116 RY45_RS06120 RY45_RS06125 PF04205 FMN-binding domain RY45_RS06130 PF02508 RY45_RS06130 RY45_RS06135 PF02508 RY45_RS06135 RY45_RS06140 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_RS06140 PF00175 Oxidoreductase NAD-binding domain RY45_RS06140 PF00970 Oxidoreductase FAD-binding domain RY45_RS06145 PF02424 ApbE family RY45_RS06150 PF04400 RY45_RS06150 RY45_RS06160 PF00817 impB/mucB/samB family RY45_RS06160 PF11798 IMS family HHH motif RY45_RS06160 PF11799 impB/mucB/samB family C-terminal domain RY45_RS06165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS06165 PF00672 HAMP domain RY45_RS06165 PF02743 Cache domain RY45_RS06170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS06170 PF03466 LysR substrate binding domain RY45_RS06175 PF12697 Alpha/beta hydrolase family RY45_RS06180 PF04241 RY45_RS06180 RY45_RS06185 PF01728 FtsJ-like methyltransferase RY45_RS06195 PF00180 Isocitrate/isopropylmalate dehydrogenase RY45_RS06200 PF01367 5'-3' exonuclease, C-terminal SAM fold RY45_RS06200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RY45_RS06205 PF03641 Possible lysine decarboxylase RY45_RS06205 PF11892 Domain of unknown function (DUF3412) RY45_RS06205 PF14793 Domain of unknown function (DUF4478) RY45_RS06210 PF00990 GGDEF domain RY45_RS06220 PF14489 QueF-like protein RY45_RS06220 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RY45_RS06225 PF07348 Syd protein (SUKH-2) RY45_RS06230 PF10071 RY45_RS06230 RY45_RS06240 PF10982 Protein of unknown function (DUF2789) RY45_RS06245 PF11743 RY45_RS06245 RY45_RS06250 PF12069 RY45_RS06250 RY45_RS06255 PF04287 tRNA pseudouridine synthase C RY45_RS06260 PF00849 RNA pseudouridylate synthase RY45_RS06265 PF00258 Flavodoxin RY45_RS06270 PF02264 LamB porin RY45_RS06275 PF07148 RY45_RS06275 RY45_RS06280 PF00367 phosphotransferase system, EIIB RY45_RS06280 PF02378 Phosphotransferase system, EIIC RY45_RS06285 PF11944 RY45_RS06285 RY45_RS06290 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS06290 PF14602 Hexapeptide repeat of succinyl-transferase RY45_RS06290 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RY45_RS06295 PF01909 Nucleotidyltransferase domain RY45_RS06295 PF01966 HD domain RY45_RS06295 PF08335 GlnD PII-uridylyltransferase RY45_RS06300 PF00557 Metallopeptidase family M24 RY45_RS06305 PF00318 Ribosomal protein S2 RY45_RS06310 PF00889 Elongation factor TS RY45_RS06315 PF00696 Amino acid kinase family RY45_RS06320 PF01765 Ribosome recycling factor RY45_RS06325 PF01255 Putative undecaprenyl diphosphate synthase RY45_RS06330 PF01148 Cytidylyltransferase family RY45_RS06335 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RY45_RS06335 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal RY45_RS06335 PF13288 DXP reductoisomerase C-terminal domain RY45_RS06340 PF02163 Peptidase family M50 RY45_RS06345 PF01103 Surface antigen RY45_RS06345 PF07244 Surface antigen variable number repeat RY45_RS06350 PF03938 Outer membrane protein (OmpH-like) RY45_RS06355 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS06355 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RY45_RS06360 PF07977 FabA-like domain RY45_RS06365 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS06365 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RY45_RS06370 PF02684 RY45_RS06370 RY45_RS06375 PF01351 Ribonuclease HII RY45_RS06380 PF01336 OB-fold nucleic acid binding domain RY45_RS06380 PF02811 PHP domain RY45_RS06380 PF07733 Bacterial DNA polymerase III alpha subunit RY45_RS06380 PF14579 Helix-hairpin-helix motif RY45_RS06385 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RY45_RS06390 PF00486 Transcriptional regulatory protein, C terminal RY45_RS06395 PF13520 Amino acid permease RY45_RS06400 PF01276 Orn/Lys/Arg decarboxylase, major domain RY45_RS06400 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RY45_RS06400 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RY45_RS06405 PF08543 Phosphomethylpyrimidine kinase RY45_RS06410 PF01554 MatE RY45_RS06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS06415 PF03466 LysR substrate binding domain RY45_RS06420 PF03222 Tryptophan/tyrosine permease family RY45_RS06425 PF12706 Beta-lactamase superfamily domain RY45_RS06430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS06430 PF03466 LysR substrate binding domain RY45_RS06435 PF12697 Alpha/beta hydrolase family RY45_RS06440 PF01738 Dienelactone hydrolase family RY45_RS06445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS06445 PF03466 LysR substrate binding domain RY45_RS06450 PF13520 Amino acid permease RY45_RS06455 PF13302 Acetyltransferase (GNAT) domain RY45_RS06460 PF00005 ABC transporter RY45_RS06465 PF16743 RY45_RS06465 RY45_RS06470 PF01431 Peptidase family M13 RY45_RS06470 PF05649 Peptidase family M13 RY45_RS06475 PF01171 PP-loop family RY45_RS06475 PF09179 TilS substrate binding domain RY45_RS06475 PF11734 TilS substrate C-terminal domain RY45_RS06480 PF00990 GGDEF domain RY45_RS06490 PF01734 Patatin-like phospholipase RY45_RS06495 PF12146 Putative lysophospholipase RY45_RS06500 PF00440 Bacterial regulatory proteins, tetR family RY45_RS06505 PF00072 Response regulator receiver domain RY45_RS06505 PF00196 Bacterial regulatory proteins, luxR family RY45_RS06510 PF13417 Glutathione S-transferase, N-terminal domain RY45_RS06515 PF00128 Alpha amylase, catalytic domain RY45_RS06525 PF04138 RY45_RS06525 RY45_RS06530 PF00535 Glycosyl transferase family 2 RY45_RS06540 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS06545 PF01471 Putative peptidoglycan binding domain RY45_RS06545 PF03734 L,D-transpeptidase catalytic domain RY45_RS06550 PF05951 RY45_RS06550 RY45_RS06560 PF03458 RY45_RS06560 RY45_RS06565 PF07264 Etoposide-induced protein 2 RY45_RS06575 PF04354 ZipA, C-terminal FtsZ-binding domain RY45_RS06580 PF00533 BRCA1 C Terminus (BRCT) domain RY45_RS06580 PF01653 NAD-dependent DNA ligase adenylation domain RY45_RS06580 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RY45_RS06580 PF03120 NAD-dependent DNA ligase OB-fold domain RY45_RS06580 PF12826 Helix-hairpin-helix motif RY45_RS06580 PF14520 Helix-hairpin-helix domain RY45_RS06585 PF04392 ABC transporter substrate binding protein RY45_RS06590 PF03477 ATP cone domain RY45_RS06590 PF13597 Anaerobic ribonucleoside-triphosphate reductase RY45_RS06595 PF13353 4Fe-4S single cluster domain RY45_RS06605 PF03544 Gram-negative bacterial TonB protein C-terminal RY45_RS06610 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme RY45_RS06615 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS06620 PF11168 RY45_RS06620 RY45_RS06620 PF13515 RY45_RS06620 RY45_RS06625 PF13437 HlyD family secretion protein RY45_RS06625 PF13533 Biotin-lipoyl like RY45_RS06630 PF01047 MarR family RY45_RS06635 PF03390 RY45_RS06635 RY45_RS06640 PF00390 Malic enzyme, N-terminal domain RY45_RS06640 PF03949 Malic enzyme, NAD binding domain RY45_RS06645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS06645 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RY45_RS06645 PF17203 RY45_RS06645 RY45_RS06650 PF00072 Response regulator receiver domain RY45_RS06650 PF12431 RY45_RS06650 RY45_RS06655 PF00892 EamA-like transporter family RY45_RS06660 PF02311 AraC-like ligand binding domain RY45_RS06660 PF12833 Helix-turn-helix domain RY45_RS06665 PF00171 Aldehyde dehydrogenase family RY45_RS06670 PF00158 Sigma-54 interaction domain RY45_RS06670 PF01590 GAF domain RY45_RS06670 PF02954 Bacterial regulatory protein, Fis family RY45_RS06675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_RS06675 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_RS06675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_RS06680 PF02515 CoA-transferase family III RY45_RS06685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS06690 PF00072 Response regulator receiver domain RY45_RS06690 PF00486 Transcriptional regulatory protein, C terminal RY45_RS06695 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS06695 PF00989 PAS fold RY45_RS06695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS06695 PF11808 RY45_RS06695 RY45_RS06700 PF12849 PBP superfamily domain RY45_RS06705 PF01435 Peptidase family M48 RY45_RS06710 PF00583 Acetyltransferase (GNAT) family RY45_RS06715 PF00480 ROK family RY45_RS06720 PF03932 CutC family RY45_RS06730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_RS06730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RY45_RS06735 PF00005 ABC transporter RY45_RS06740 PF01061 RY45_RS06740 RY45_RS06745 PF11006 RY45_RS06745 RY45_RS06750 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS06755 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS06760 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS06765 PF00005 ABC transporter RY45_RS06770 PF06526 Protein of unknown function (DUF1107) RY45_RS06775 PF00293 NUDIX domain RY45_RS06785 PF08534 Redoxin RY45_RS06790 PF01699 Sodium/calcium exchanger protein RY45_RS06795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RY45_RS06795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RY45_RS06800 PF01235 RY45_RS06800 RY45_RS06805 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RY45_RS06805 PF08479 POTRA domain, ShlB-type RY45_RS06810 PF05594 RY45_RS06810 RY45_RS06810 PF05860 haemagglutination activity domain RY45_RS06815 PF04830 RY45_RS06815 RY45_RS06815 PF13332 RY45_RS06815 RY45_RS06830 PF00860 Permease family RY45_RS06835 PF00990 GGDEF domain RY45_RS06840 PF10692 Protein of unknown function (DUF2498) RY45_RS06845 PF01554 MatE RY45_RS06850 PF12833 Helix-turn-helix domain RY45_RS06855 PF00390 Malic enzyme, N-terminal domain RY45_RS06855 PF03949 Malic enzyme, NAD binding domain RY45_RS06860 PF00691 OmpA family RY45_RS06860 PF01389 OmpA-like transmembrane domain RY45_RS06865 PF00691 OmpA family RY45_RS06865 PF01389 OmpA-like transmembrane domain RY45_RS06870 PF00691 OmpA family RY45_RS06870 PF01389 OmpA-like transmembrane domain RY45_RS06880 PF01381 Helix-turn-helix RY45_RS06885 PF00209 Sodium:neurotransmitter symporter family RY45_RS06890 PF01734 Patatin-like phospholipase RY45_RS06895 PF00990 GGDEF domain RY45_RS06895 PF02743 Cache domain RY45_RS06900 PF16576 RY45_RS06900 RY45_RS06905 PF00873 AcrB/AcrD/AcrF family RY45_RS06915 PF04055 Radical SAM superfamily RY45_RS06915 PF08497 RY45_RS06915 RY45_RS06915 PF11842 RY45_RS06915 RY45_RS06930 PF05163 DinB family RY45_RS06935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RY45_RS06945 PF02075 Crossover junction endodeoxyribonuclease RuvC RY45_RS06950 PF00230 Major intrinsic protein RY45_RS06955 PF01464 Transglycosylase SLT domain RY45_RS06960 PF00128 Alpha amylase, catalytic domain RY45_RS06965 PF01551 Peptidase family M23 RY45_RS06970 PF13673 Acetyltransferase (GNAT) domain RY45_RS06975 PF07273 Protein of unknown function (DUF1439) RY45_RS06980 PF13091 PLD-like domain RY45_RS06985 PF06097 RY45_RS06985 RY45_RS06990 PF00551 Formyl transferase RY45_RS06990 PF01842 ACT domain RY45_RS06995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RY45_RS07000 PF04728 Lipoprotein leucine-zipper RY45_RS07005 PF00085 Thioredoxin RY45_RS07005 PF14559 Tetratricopeptide repeat RY45_RS07005 PF14561 Tetratricopeptide repeat RY45_RS07010 PF01648 4'-phosphopantetheinyl transferase superfamily RY45_RS07015 PF00877 NlpC/P60 family RY45_RS07020 PF05971 Protein of unknown function (DUF890) RY45_RS07025 PF01575 MaoC like domain RY45_RS07030 PF04338 Protein of unknown function, DUF481 RY45_RS07035 PF03734 L,D-transpeptidase catalytic domain RY45_RS07045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS07045 PF03466 LysR substrate binding domain RY45_RS07050 PF02634 FdhD/NarQ family RY45_RS07055 PF00384 Molybdopterin oxidoreductase RY45_RS07055 PF01568 Molydopterin dinucleotide binding domain RY45_RS07085 PF07520 RY45_RS07085 RY45_RS07090 PF10139 RY45_RS07090 RY45_RS07105 PF00005 ABC transporter RY45_RS07110 PF02687 RY45_RS07110 RY45_RS07110 PF12704 MacB-like periplasmic core domain RY45_RS07115 PF03781 Sulfatase-modifying factor enzyme 1 RY45_RS07125 PF00665 Integrase core domain RY45_RS07125 PF13276 RY45_RS07125 RY45_RS07140 PF00440 Bacterial regulatory proteins, tetR family RY45_RS07145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_RS07145 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_RS07145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_RS07145 PF09317 RY45_RS07145 RY45_RS07150 PF00873 AcrB/AcrD/AcrF family RY45_RS07155 PF16576 RY45_RS07155 RY45_RS07160 PF00224 Pyruvate kinase, barrel domain RY45_RS07160 PF02887 Pyruvate kinase, alpha/beta domain RY45_RS07165 PF01380 SIS domain RY45_RS07165 PF01418 Helix-turn-helix domain, rpiR family RY45_RS07170 PF02685 Glucokinase RY45_RS07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS07180 PF00072 Response regulator receiver domain RY45_RS07180 PF00486 Transcriptional regulatory protein, C terminal RY45_RS07185 PF00919 Uncharacterized protein family UPF0004 RY45_RS07185 PF01938 TRAM domain RY45_RS07185 PF04055 Radical SAM superfamily RY45_RS07190 PF01966 HD domain RY45_RS07200 PF02049 RY45_RS07200 RY45_RS07205 PF01514 Secretory protein of YscJ/FliF family RY45_RS07205 PF08345 RY45_RS07205 RY45_RS07210 PF01706 FliG C-terminal domain RY45_RS07210 PF14841 FliG middle domain RY45_RS07210 PF14842 FliG N-terminal domain RY45_RS07215 PF02108 RY45_RS07215 RY45_RS07220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_RS07225 PF02050 Flagellar FliJ protein RY45_RS07230 PF02120 Flagellar hook-length control protein FliK RY45_RS07235 PF03748 RY45_RS07235 RY45_RS07240 PF01052 Surface presentation of antigens (SPOA) RY45_RS07240 PF02154 Flagellar motor switch protein FliM RY45_RS07245 PF01052 Surface presentation of antigens (SPOA) RY45_RS07250 PF04347 RY45_RS07250 RY45_RS07255 PF00813 RY45_RS07255 RY45_RS07260 PF01313 RY45_RS07260 RY45_RS07265 PF01311 RY45_RS07265 RY45_RS07270 PF01312 FlhB HrpN YscU SpaS Family RY45_RS07275 PF00771 FHIPEP family RY45_RS07280 PF00448 SRP54-type protein, GTPase domain RY45_RS07285 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_RS07290 PF04539 Sigma-70 region 3 RY45_RS07290 PF04542 Sigma-70 region 2 RY45_RS07290 PF04545 Sigma-70, region 4 RY45_RS07295 PF00072 Response regulator receiver domain RY45_RS07300 PF04344 Chemotaxis phosphatase, CheZ RY45_RS07305 PF01584 CheW-like domain RY45_RS07305 PF01627 Hpt domain RY45_RS07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS07305 PF02895 Signal transducing histidine kinase, homodimeric domain RY45_RS07310 PF00072 Response regulator receiver domain RY45_RS07310 PF01339 CheB methylesterase RY45_RS07315 PF01618 RY45_RS07315 RY45_RS07320 PF00691 OmpA family RY45_RS07320 PF13677 RY45_RS07320 RY45_RS07325 PF13614 AAA domain RY45_RS07330 PF01584 CheW-like domain RY45_RS07335 PF01584 CheW-like domain RY45_RS07340 PF10975 RY45_RS07340 RY45_RS07345 PF00005 ABC transporter RY45_RS07350 PF03379 RY45_RS07350 RY45_RS07355 PF01578 RY45_RS07355 RY45_RS07360 PF04995 RY45_RS07360 RY45_RS07365 PF03100 CcmE RY45_RS07370 PF01578 RY45_RS07370 RY45_RS07370 PF16327 RY45_RS07370 RY45_RS07375 PF08534 Redoxin RY45_RS07380 PF03918 Cytochrome C biogenesis protein RY45_RS07385 PF14559 Tetratricopeptide repeat RY45_RS07390 PF04333 RY45_RS07390 RY45_RS07395 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RY45_RS07395 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RY45_RS07400 PF00462 Glutaredoxin RY45_RS07405 PF01189 NOL1/NOP2/sun family RY45_RS07410 PF13583 Metallo-peptidase family M12B Reprolysin-like RY45_RS07420 PF01243 Pyridoxamine 5'-phosphate oxidase RY45_RS07420 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RY45_RS07425 PF00043 Glutathione S-transferase, C-terminal domain RY45_RS07425 PF13417 Glutathione S-transferase, N-terminal domain RY45_RS07430 PF13302 Acetyltransferase (GNAT) domain RY45_RS07435 PF13527 Acetyltransferase (GNAT) domain RY45_RS07450 PF08007 Cupin superfamily protein RY45_RS07455 PF00206 Lyase RY45_RS07455 PF08328 Adenylosuccinate lyase C-terminal RY45_RS07460 PF04356 Protein of unknown function (DUF489) RY45_RS07465 PF03054 tRNA methyl transferase RY45_RS07470 PF00293 NUDIX domain RY45_RS07475 PF00849 RNA pseudouridylate synthase RY45_RS07480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS07480 PF00381 PTS HPr component phosphorylation site RY45_RS07485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_RS07490 PF07690 Major Facilitator Superfamily RY45_RS07495 PF05932 Tir chaperone protein (CesT) family RY45_RS07500 PF09013 YopH, N-terminal RY45_RS07505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS07505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_RS07505 PF02378 Phosphotransferase system, EIIC RY45_RS07520 PF13580 SIS domain RY45_RS07530 PF13411 MerR HTH family regulatory protein RY45_RS07535 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_RS07540 PF00356 Bacterial regulatory proteins, lacI family RY45_RS07540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_RS07545 PF00367 phosphotransferase system, EIIB RY45_RS07545 PF02378 Phosphotransferase system, EIIC RY45_RS07550 PF00155 Aminotransferase class I and II RY45_RS07565 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS07565 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_RS07565 PF02378 Phosphotransferase system, EIIC RY45_RS07575 PF01238 Phosphomannose isomerase type I RY45_RS07580 PF12833 Helix-turn-helix domain RY45_RS07585 PF00180 Isocitrate/isopropylmalate dehydrogenase RY45_RS07590 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS07595 PF02447 RY45_RS07595 RY45_RS07600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS07600 PF03466 LysR substrate binding domain RY45_RS07610 PF04320 RY45_RS07610 RY45_RS07620 PF02384 N-6 DNA Methylase RY45_RS07620 PF12161 HsdM N-terminal domain RY45_RS07625 PF00271 Helicase conserved C-terminal domain RY45_RS07625 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RY45_RS07625 PF04851 Type III restriction enzyme, res subunit RY45_RS07625 PF08463 RY45_RS07625 RY45_RS07630 PF04471 Restriction endonuclease RY45_RS07630 PF14338 RY45_RS07630 RY45_RS07635 PF00589 Phage integrase family RY45_RS07635 PF12167 RY45_RS07635 RY45_RS07660 PF14359 Domain of unknown function (DUF4406) RY45_RS07680 PF12961 Domain of Unknown Function with PDB structure (DUF3850) RY45_RS07695 PF04381 Putative exonuclease, RdgC RY45_RS07700 PF05869 RY45_RS07700 RY45_RS07725 PF12684 PDDEXK-like domain of unknown function (DUF3799) RY45_RS07760 PF13443 Cro/C1-type HTH DNA-binding domain RY45_RS07765 PF14549 DNA-binding transcriptional regulator Cro RY45_RS07780 PF04492 RY45_RS07780 RY45_RS07785 PF00772 DnaB-like helicase N terminal domain RY45_RS07785 PF03796 DnaB-like helicase C terminal domain RY45_RS07800 PF05772 NinB protein RY45_RS07810 PF16786 RY45_RS07810 RY45_RS07835 PF11686 RY45_RS07835 RY45_RS07845 PF10746 RY45_RS07845 RY45_RS07850 PF05838 Glycosyl hydrolase 108 RY45_RS07850 PF09374 Predicted Peptidoglycan domain RY45_RS07940 PF03869 Arc-like DNA binding domain RY45_RS07945 PF03374 RY45_RS07945 RY45_RS07945 PF09669 RY45_RS07945 RY45_RS07970 PF01668 SmpB protein RY45_RS07975 PF03364 Polyketide cyclase / dehydrase and lipid transport RY45_RS07980 PF03658 RnfH family Ubiquitin RY45_RS07985 PF13460 NADH(P)-binding RY45_RS07990 PF04355 SmpA / OmlA family RY45_RS07995 PF00465 Iron-containing alcohol dehydrogenase RY45_RS08000 PF01048 Phosphorylase superfamily RY45_RS08005 PF00849 RNA pseudouridylate synthase RY45_RS08010 PF01156 Inosine-uridine preferring nucleoside hydrolase RY45_RS08020 PF09904 Winged helix-turn helix RY45_RS08025 PF07509 RY45_RS08025 RY45_RS08030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS08030 PF00672 HAMP domain RY45_RS08035 PF01810 RY45_RS08035 RY45_RS08040 PF07313 Protein of unknown function (DUF1460) RY45_RS08045 PF00999 Sodium/hydrogen exchanger family RY45_RS08050 PF07555 beta-N-acetylglucosaminidase RY45_RS08055 PF00999 Sodium/hydrogen exchanger family RY45_RS08055 PF02080 TrkA-C domain RY45_RS08055 PF03471 Transporter associated domain RY45_RS08060 PF02557 D-alanyl-D-alanine carboxypeptidase RY45_RS08065 PF01546 Peptidase family M20/M25/M40 RY45_RS08065 PF07687 Peptidase dimerisation domain RY45_RS08070 PF03960 ArsC family RY45_RS08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS08075 PF03466 LysR substrate binding domain RY45_RS08085 PF03606 RY45_RS08085 RY45_RS08090 PF01546 Peptidase family M20/M25/M40 RY45_RS08090 PF07687 Peptidase dimerisation domain RY45_RS08095 PF01902 ATP-binding region RY45_RS08100 PF03605 RY45_RS08100 RY45_RS08105 PF00152 tRNA synthetases class II (D, K and N) RY45_RS08105 PF01336 OB-fold nucleic acid binding domain RY45_RS08115 PF00672 HAMP domain RY45_RS08120 PF00202 Aminotransferase class-III RY45_RS08125 PF04055 Radical SAM superfamily RY45_RS08125 PF06968 Biotin and Thiamin Synthesis associated domain RY45_RS08130 PF00155 Aminotransferase class I and II RY45_RS08135 PF08241 Methyltransferase domain RY45_RS08140 PF13500 AAA domain RY45_RS08145 PF01435 Peptidase family M48 RY45_RS08150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS08155 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_RS08155 PF00175 Oxidoreductase NAD-binding domain RY45_RS08155 PF00970 Oxidoreductase FAD-binding domain RY45_RS08155 PF03473 MOSC domain RY45_RS08155 PF03476 MOSC N-terminal beta barrel domain RY45_RS08160 PF00037 4Fe-4S binding domain RY45_RS08160 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS08160 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RY45_RS08165 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RY45_RS08165 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RY45_RS08165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_RS08165 PF10371 Domain of unknown function RY45_RS08165 PF12838 4Fe-4S dicluster domain RY45_RS08165 PF17147 RY45_RS08165 RY45_RS08170 PF04325 Protein of unknown function (DUF465) RY45_RS08180 PF01554 MatE RY45_RS08185 PF00916 RY45_RS08185 RY45_RS08185 PF01740 STAS domain RY45_RS08190 PF06042 Bacterial protein of unknown function (DUF925) RY45_RS08195 PF14542 GCN5-related N-acetyl-transferase RY45_RS08200 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS08210 PF00465 Iron-containing alcohol dehydrogenase RY45_RS08220 PF00440 Bacterial regulatory proteins, tetR family RY45_RS08225 PF00171 Aldehyde dehydrogenase family RY45_RS08235 PF00877 NlpC/P60 family RY45_RS08240 PF07968 Leukocidin/Hemolysin toxin family RY45_RS08240 PF12563 Hemolytic toxin N terminal RY45_RS08245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS08245 PF03466 LysR substrate binding domain RY45_RS08250 PF00578 AhpC/TSA family RY45_RS08250 PF10417 C-terminal domain of 1-Cys peroxiredoxin RY45_RS08255 PF14397 RY45_RS08255 RY45_RS08260 PF14400 RY45_RS08260 RY45_RS08260 PF14402 RY45_RS08260 RY45_RS08265 PF05618 Putative ATP-dependant zinc protease RY45_RS08270 PF08003 Protein of unknown function (DUF1698) RY45_RS08275 PF13649 Methyltransferase domain RY45_RS08280 PF01904 Protein of unknown function DUF72 RY45_RS08285 PF00152 tRNA synthetases class II (D, K and N) RY45_RS08285 PF01336 OB-fold nucleic acid binding domain RY45_RS08285 PF02938 GAD domain RY45_RS08290 PF01709 Transcriptional regulator RY45_RS08295 PF00884 Sulfatase RY45_RS08295 PF08019 RY45_RS08295 RY45_RS08300 PF00480 ROK family RY45_RS08305 PF01979 Amidohydrolase family RY45_RS08310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RY45_RS08315 PF00367 phosphotransferase system, EIIB RY45_RS08315 PF02378 Phosphotransferase system, EIIC RY45_RS08320 PF00728 Glycosyl hydrolase family 20, catalytic domain RY45_RS08320 PF02838 Glycosyl hydrolase family 20, domain 2 RY45_RS08320 PF03173 Putative carbohydrate binding domain RY45_RS08320 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain RY45_RS08325 PF00749 tRNA synthetases class I (E and Q), catalytic domain RY45_RS08325 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RY45_RS08330 PF01475 Ferric uptake regulator family RY45_RS08335 PF14539 Domain of unknown function (DUF4442) RY45_RS08340 PF00258 Flavodoxin RY45_RS08345 PF01402 Ribbon-helix-helix protein, copG family RY45_RS08350 PF10981 RY45_RS08350 RY45_RS08355 PF12697 Alpha/beta hydrolase family RY45_RS08360 PF03925 SeqA protein RY45_RS08365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RY45_RS08365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RY45_RS08365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RY45_RS08365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RY45_RS08370 PF00892 EamA-like transporter family RY45_RS08375 PF01047 MarR family RY45_RS08380 PF00440 Bacterial regulatory proteins, tetR family RY45_RS08380 PF16925 RY45_RS08380 RY45_RS08385 PF00578 AhpC/TSA family RY45_RS08390 PF13406 Transglycosylase SLT domain RY45_RS08395 PF01066 CDP-alcohol phosphatidyltransferase RY45_RS08400 PF00005 ABC transporter RY45_RS08410 PF13416 Bacterial extracellular solute-binding protein RY45_RS08415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_RS08415 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS08415 PF09335 RY45_RS08415 RY45_RS08420 PF02627 Carboxymuconolactone decarboxylase family RY45_RS08425 PF07386 RY45_RS08425 RY45_RS08430 PF01625 Peptide methionine sulfoxide reductase RY45_RS08435 PF00639 PPIC-type PPIASE domain RY45_RS08445 PF01103 Surface antigen RY45_RS08445 PF07244 Surface antigen variable number repeat RY45_RS08450 PF04357 RY45_RS08450 RY45_RS08465 PF11993 RY45_RS08465 RY45_RS08470 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RY45_RS08475 PF00563 EAL domain RY45_RS08475 PF00990 GGDEF domain RY45_RS08475 PF13426 PAS domain RY45_RS08480 PF01464 Transglycosylase SLT domain RY45_RS08480 PF14718 Soluble lytic murein transglycosylase L domain RY45_RS08485 PF00356 Bacterial regulatory proteins, lacI family RY45_RS08485 PF13377 Periplasmic binding protein-like domain RY45_RS08495 PF03061 Thioesterase superfamily RY45_RS08505 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_RS08510 PF01464 Transglycosylase SLT domain RY45_RS08510 PF01476 LysM domain RY45_RS08515 PF00753 Metallo-beta-lactamase superfamily RY45_RS08515 PF16123 RY45_RS08515 RY45_RS08520 PF08241 Methyltransferase domain RY45_RS08525 PF00075 RNase H RY45_RS08530 PF00929 Exonuclease RY45_RS08540 PF02541 Ppx/GppA phosphatase family RY45_RS08545 PF02503 Polyphosphate kinase middle domain RY45_RS08545 PF13089 Polyphosphate kinase N-terminal domain RY45_RS08545 PF13090 Polyphosphate kinase C-terminal domain RY45_RS08550 PF13740 ACT domain RY45_RS08555 PF01396 RY45_RS08555 RY45_RS08555 PF10881 RY45_RS08555 RY45_RS08560 PF00158 Sigma-54 interaction domain RY45_RS08560 PF02954 Bacterial regulatory protein, Fis family RY45_RS08560 PF06490 RY45_RS08560 RY45_RS08565 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS08565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS08565 PF13188 PAS domain RY45_RS08570 PF00072 Response regulator receiver domain RY45_RS08570 PF00158 Sigma-54 interaction domain RY45_RS08570 PF02954 Bacterial regulatory protein, Fis family RY45_RS08575 PF01784 NIF3 (NGG1p interacting factor 3) RY45_RS08580 PF00551 Formyl transferase RY45_RS08585 PF00586 AIR synthase related protein, N-terminal domain RY45_RS08585 PF02769 AIR synthase related protein, C-terminal domain RY45_RS08590 PF14681 Uracil phosphoribosyltransferase RY45_RS08595 PF09839 RY45_RS08595 RY45_RS08600 PF00308 Bacterial dnaA protein RY45_RS08605 PF00463 Isocitrate lyase family RY45_RS08610 PF01274 Malate synthase RY45_RS08620 PF14437 RY45_RS08620 RY45_RS08625 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS08635 PF00005 ABC transporter RY45_RS08640 PF01895 PhoU domain RY45_RS08650 PF11692 RY45_RS08650 RY45_RS08655 PF01527 Transposase RY45_RS08660 PF01595 RY45_RS08660 RY45_RS08660 PF03471 Transporter associated domain RY45_RS08670 PF02574 Homocysteine S-methyltransferase RY45_RS08675 PF13520 Amino acid permease RY45_RS08685 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS08690 PF00005 ABC transporter RY45_RS08695 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS08700 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS08705 PF00990 GGDEF domain RY45_RS08710 PF07690 Major Facilitator Superfamily RY45_RS08715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS08715 PF05231 RY45_RS08715 RY45_RS08715 PF07730 Histidine kinase RY45_RS08720 PF00072 Response regulator receiver domain RY45_RS08720 PF00196 Bacterial regulatory proteins, luxR family RY45_RS08725 PF01272 Transcription elongation factor, GreA/GreB, C-term RY45_RS08725 PF14760 Rnk N-terminus RY45_RS08735 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS08745 PF00245 Alkaline phosphatase RY45_RS08750 PF00245 Alkaline phosphatase RY45_RS08755 PF01926 50S ribosome-binding GTPase RY45_RS08760 PF07690 Major Facilitator Superfamily RY45_RS08765 PF00850 Histone deacetylase domain RY45_RS08770 PF09829 RY45_RS08770 RY45_RS08775 PF06733 DEAD_2 RY45_RS08775 PF13307 Helicase C-terminal domain RY45_RS08780 PF13609 Gram-negative porin RY45_RS08790 PF00155 Aminotransferase class I and II RY45_RS08800 PF00994 Probable molybdopterin binding domain RY45_RS08800 PF03453 MoeA N-terminal region (domain I and II) RY45_RS08800 PF03454 MoeA C-terminal region (domain IV) RY45_RS08805 PF01227 GTP cyclohydrolase I RY45_RS08810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS08810 PF00672 HAMP domain RY45_RS08810 PF12729 RY45_RS08810 RY45_RS08815 PF01268 Formate--tetrahydrofolate ligase RY45_RS08825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS08825 PF03466 LysR substrate binding domain RY45_RS08830 PF04264 YceI-like domain RY45_RS08840 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RY45_RS08845 PF10262 Rdx family RY45_RS08850 PF01553 Acyltransferase RY45_RS08850 PF13444 Acetyltransferase (GNAT) domain RY45_RS08855 PF01546 Peptidase family M20/M25/M40 RY45_RS08855 PF07687 Peptidase dimerisation domain RY45_RS08865 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RY45_RS08865 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RY45_RS08880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS08885 PF03222 Tryptophan/tyrosine permease family RY45_RS08890 PF01042 Endoribonuclease L-PSP RY45_RS08895 PF03313 RY45_RS08895 RY45_RS08900 PF08348 RY45_RS08900 RY45_RS08900 PF13309 RY45_RS08900 RY45_RS08905 PF00300 Histidine phosphatase superfamily (branch 1) RY45_RS08910 PF01844 HNH endonuclease RY45_RS08920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS08925 PF12146 Putative lysophospholipase RY45_RS08930 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RY45_RS08930 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RY45_RS08935 PF00849 RNA pseudouridylate synthase RY45_RS08935 PF01479 S4 domain RY45_RS08940 PF07690 Major Facilitator Superfamily RY45_RS08945 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RY45_RS08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS08950 PF03466 LysR substrate binding domain RY45_RS08955 PF07690 Major Facilitator Superfamily RY45_RS08960 PF14526 Integron-associated effector binding protein RY45_RS08965 PF03061 Thioesterase superfamily RY45_RS08975 PF00892 EamA-like transporter family RY45_RS08980 PF04391 RY45_RS08980 RY45_RS08985 PF00155 Aminotransferase class I and II RY45_RS08985 PF00392 Bacterial regulatory proteins, gntR family RY45_RS08990 PF01654 RY45_RS08990 RY45_RS08995 PF02322 RY45_RS08995 RY45_RS09000 PF08173 RY45_RS09000 RY45_RS09005 PF07690 Major Facilitator Superfamily RY45_RS09010 PF00248 Aldo/keto reductase family RY45_RS09015 PF03992 Antibiotic biosynthesis monooxygenase RY45_RS09020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS09030 PF03466 LysR substrate binding domain RY45_RS09035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RY45_RS09035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RY45_RS09040 PF00230 Major intrinsic protein RY45_RS09045 PF07690 Major Facilitator Superfamily RY45_RS09050 PF00455 RY45_RS09050 RY45_RS09050 PF08220 DeoR-like helix-turn-helix domain RY45_RS09055 PF01266 FAD dependent oxidoreductase RY45_RS09055 PF16901 RY45_RS09055 RY45_RS09060 PF03009 Glycerophosphoryl diester phosphodiesterase family RY45_RS09065 PF12762 RY45_RS09065 RY45_RS09070 PF00793 DAHP synthetase I family RY45_RS09075 PF01817 Chorismate mutase type II RY45_RS09075 PF02153 Prephenate dehydrogenase RY45_RS09080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS09080 PF03466 LysR substrate binding domain RY45_RS09085 PF04219 RY45_RS09085 RY45_RS09090 PF03974 Ecotin RY45_RS09095 PF07603 RY45_RS09095 RY45_RS09100 PF07603 RY45_RS09100 RY45_RS09105 PF01483 Proprotein convertase P-domain RY45_RS09105 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RY45_RS09110 PF00326 Prolyl oligopeptidase family RY45_RS09110 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RY45_RS09115 PF00593 TonB dependent receptor RY45_RS09115 PF07715 TonB-dependent Receptor Plug Domain RY45_RS09120 PF00884 Sulfatase RY45_RS09120 PF11893 RY45_RS09120 RY45_RS09125 PF07208 Protein of unknown function (DUF1414) RY45_RS09130 PF04245 RY45_RS09130 RY45_RS09135 PF13416 Bacterial extracellular solute-binding protein RY45_RS09140 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS09140 PF14785 Maltose transport system permease protein MalF P2 domain RY45_RS09145 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS09150 PF00005 ABC transporter RY45_RS09150 PF08402 TOBE domain RY45_RS09155 PF03976 Polyphosphate kinase 2 (PPK2) RY45_RS09160 PF00561 alpha/beta hydrolase fold RY45_RS09165 PF06629 RY45_RS09165 RY45_RS09170 PF01594 RY45_RS09170 RY45_RS09175 PF01206 Sulfurtransferase TusA RY45_RS09180 PF01435 Peptidase family M48 RY45_RS09180 PF14559 Tetratricopeptide repeat RY45_RS09185 PF08534 Redoxin RY45_RS09190 PF03960 ArsC family RY45_RS09195 PF09842 RY45_RS09195 RY45_RS09200 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family RY45_RS09205 PF04336 RY45_RS09205 RY45_RS09210 PF01979 Amidohydrolase family RY45_RS09215 PF03956 RY45_RS09215 RY45_RS09220 PF00005 ABC transporter RY45_RS09225 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS09230 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS09235 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS09240 PF01891 Cobalt uptake substrate-specific transmembrane region RY45_RS09245 PF04055 Radical SAM superfamily RY45_RS09245 PF13353 4Fe-4S single cluster domain RY45_RS09250 PF00563 EAL domain RY45_RS09250 PF00989 PAS fold RY45_RS09250 PF00990 GGDEF domain RY45_RS09250 PF01590 GAF domain RY45_RS09255 PF00581 Rhodanese-like domain RY45_RS09255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_RS09255 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS09260 PF00207 Alpha-2-macroglobulin family RY45_RS09260 PF01835 MG2 domain RY45_RS09260 PF07703 Alpha-2-macroglobulin family N-terminal region RY45_RS09260 PF11974 Alpha-2-macroglobulin MG1 domain RY45_RS09265 PF00905 Penicillin binding protein transpeptidase domain RY45_RS09265 PF00912 Transglycosylase RY45_RS09265 PF06832 RY45_RS09265 RY45_RS09275 PF02568 Thiamine biosynthesis protein (ThiI) RY45_RS09275 PF02926 THUMP domain RY45_RS09285 PF03458 RY45_RS09285 RY45_RS09290 PF00669 Bacterial flagellin N-terminal helical region RY45_RS09290 PF00700 Bacterial flagellin C-terminal helical region RY45_RS09295 PF00669 Bacterial flagellin N-terminal helical region RY45_RS09295 PF00700 Bacterial flagellin C-terminal helical region RY45_RS09300 PF03646 FlaG protein RY45_RS09305 PF02465 RY45_RS09305 RY45_RS09305 PF07195 RY45_RS09305 RY45_RS09305 PF07196 Flagellin hook IN motif RY45_RS09310 PF02561 Flagellar protein FliS RY45_RS09320 PF01973 RY45_RS09320 RY45_RS09325 PF01497 Periplasmic binding protein RY45_RS09330 PF03186 RY45_RS09330 RY45_RS09335 PF01048 Phosphorylase superfamily RY45_RS09340 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS09345 PF02535 RY45_RS09345 RY45_RS09350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS09350 PF00672 HAMP domain RY45_RS09350 PF12729 RY45_RS09350 RY45_RS09355 PF00459 Inositol monophosphatase family RY45_RS09365 PF00043 Glutathione S-transferase, C-terminal domain RY45_RS09365 PF02798 Glutathione S-transferase, N-terminal domain RY45_RS09370 PF07690 Major Facilitator Superfamily RY45_RS09375 PF05164 Cell division protein ZapA RY45_RS09380 PF03695 Uncharacterised protein family (UPF0149) RY45_RS09385 PF01494 FAD binding domain RY45_RS09390 PF01494 FAD binding domain RY45_RS09395 PF01571 Aminomethyltransferase folate-binding domain RY45_RS09395 PF08669 Glycine cleavage T-protein C-terminal barrel domain RY45_RS09400 PF01597 Glycine cleavage H-protein RY45_RS09405 PF02347 Glycine cleavage system P-protein RY45_RS09410 PF03773 RY45_RS09410 RY45_RS09415 PF12840 Helix-turn-helix domain RY45_RS09420 PF12840 Helix-turn-helix domain RY45_RS09425 PF06953 Arsenical resistance operon trans-acting repressor ArsD RY45_RS09430 PF02374 Anion-transporting ATPase RY45_RS09435 PF01758 Sodium Bile acid symporter family RY45_RS09440 PF03960 ArsC family RY45_RS09445 PF08241 Methyltransferase domain RY45_RS09455 PF07690 Major Facilitator Superfamily RY45_RS09460 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS09460 PF13192 Thioredoxin domain RY45_RS09465 PF00578 AhpC/TSA family RY45_RS09465 PF10417 C-terminal domain of 1-Cys peroxiredoxin RY45_RS09470 PF00571 CBS domain RY45_RS09475 PF02547 Queuosine biosynthesis protein RY45_RS09480 PF01702 Queuine tRNA-ribosyltransferase RY45_RS09485 PF02699 Preprotein translocase subunit RY45_RS09490 PF02355 Protein export membrane protein RY45_RS09490 PF07549 SecD/SecF GG Motif RY45_RS09490 PF13721 SecD export protein N-terminal TM region RY45_RS09495 PF02355 Protein export membrane protein RY45_RS09495 PF07549 SecD/SecF GG Motif RY45_RS09500 PF00581 Rhodanese-like domain RY45_RS09505 PF00515 Tetratricopeptide repeat RY45_RS09510 PF01136 RY45_RS09510 RY45_RS09515 PF01136 RY45_RS09515 RY45_RS09520 PF02036 SCP-2 sterol transfer family RY45_RS09530 PF00588 SpoU rRNA Methylase family RY45_RS09535 PF02082 Transcriptional regulator RY45_RS09540 PF00266 Aminotransferase class-V RY45_RS09545 PF01592 NifU-like N terminal domain RY45_RS09550 PF01521 Iron-sulphur cluster biosynthesis RY45_RS09555 PF07743 HSCB C-terminal oligomerisation domain RY45_RS09560 PF00012 Hsp70 protein RY45_RS09565 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_RS09570 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_RS09570 PF12404 RY45_RS09570 RY45_RS09575 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_RS09575 PF12404 RY45_RS09575 RY45_RS09580 PF00334 Nucleoside diphosphate kinase RY45_RS09585 PF04055 Radical SAM superfamily RY45_RS09590 PF13181 Tetratricopeptide repeat RY45_RS09590 PF13431 Tetratricopeptide repeat RY45_RS09595 PF13413 Helix-turn-helix domain RY45_RS09595 PF13464 RY45_RS09595 RY45_RS09600 PF04551 GcpE protein RY45_RS09605 PF03129 Anticodon binding domain RY45_RS09605 PF13393 Histidyl-tRNA synthetase RY45_RS09610 PF09976 Tetratricopeptide repeat RY45_RS09615 PF13360 PQQ-like domain RY45_RS09620 PF01926 50S ribosome-binding GTPase RY45_RS09620 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RY45_RS09625 PF07191 zinc-ribbons RY45_RS09630 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS09630 PF01464 Transglycosylase SLT domain RY45_RS09635 PF02769 AIR synthase related protein, C-terminal domain RY45_RS09635 PF13507 CobB/CobQ-like glutamine amidotransferase domain RY45_RS09640 PF08448 PAS fold RY45_RS09640 PF13487 HD domain RY45_RS09645 PF08448 PAS fold RY45_RS09645 PF13487 HD domain RY45_RS09650 PF08495 RY45_RS09650 RY45_RS09650 PF10442 RY45_RS09650 RY45_RS09655 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RY45_RS09660 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RY45_RS09665 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RY45_RS09665 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RY45_RS09670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RY45_RS09675 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RY45_RS09680 PF12838 4Fe-4S dicluster domain RY45_RS09685 PF00146 NADH dehydrogenase RY45_RS09690 PF00384 Molybdopterin oxidoreductase RY45_RS09690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS09690 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RY45_RS09690 PF13510 2Fe-2S iron-sulfur cluster binding domain RY45_RS09695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RY45_RS09695 PF10531 SLBB domain RY45_RS09695 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RY45_RS09700 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin RY45_RS09705 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RY45_RS09705 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RY45_RS09710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RY45_RS09715 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RY45_RS09720 PF00691 OmpA family RY45_RS09720 PF13677 RY45_RS09720 RY45_RS09725 PF01618 RY45_RS09725 RY45_RS09735 PF04536 TLP18 RY45_RS09740 PF04536 TLP18 RY45_RS09745 PF04011 LemA family RY45_RS09750 PF03411 Penicillin-insensitive murein endopeptidase RY45_RS09760 PF00076 RNA recognition motif RY45_RS09765 PF00248 Aldo/keto reductase family RY45_RS09770 PF01381 Helix-turn-helix RY45_RS09780 PF01212 Beta-eliminating lyase RY45_RS09785 PF08448 PAS fold RY45_RS09790 PF00072 Response regulator receiver domain RY45_RS09795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS09795 PF03466 LysR substrate binding domain RY45_RS09800 PF11201 RY45_RS09800 RY45_RS09805 PF00563 EAL domain RY45_RS09805 PF00990 GGDEF domain RY45_RS09810 PF00881 Nitroreductase family RY45_RS09820 PF06185 YecM protein RY45_RS09825 PF07690 Major Facilitator Superfamily RY45_RS09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS09830 PF03466 LysR substrate binding domain RY45_RS09835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS09835 PF03466 LysR substrate binding domain RY45_RS09840 PF00925 GTP cyclohydrolase II RY45_RS09845 PF02224 Cytidylate kinase RY45_RS09850 PF00575 S1 RNA binding domain RY45_RS09855 PF00216 Bacterial DNA-binding protein RY45_RS09860 PF06305 RY45_RS09860 RY45_RS09865 PF13176 Tetratricopeptide repeat RY45_RS09865 PF13432 Tetratricopeptide repeat RY45_RS09870 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RY45_RS09875 PF01694 Rhomboid family RY45_RS09880 PF03942 RY45_RS09880 RY45_RS09885 PF06508 Queuosine biosynthesis protein QueC RY45_RS09890 PF04055 Radical SAM superfamily RY45_RS09890 PF13394 4Fe-4S single cluster domain RY45_RS09895 PF12843 RY45_RS09895 RY45_RS09900 PF01923 Cobalamin adenosyltransferase RY45_RS09905 PF00816 H-NS histone family RY45_RS09910 PF03553 RY45_RS09910 RY45_RS09915 PF00265 Thymidine kinase RY45_RS09920 PF08014 RY45_RS09920 RY45_RS09925 PF10722 Putative bacterial sensory transduction regulator RY45_RS09935 PF05638 Protein of unknown function (DUF796) RY45_RS09940 PF05954 Phage late control gene D protein (GPD) RY45_RS09950 PF12762 RY45_RS09950 RY45_RS09980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RY45_RS09980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RY45_RS09985 PF00313 'Cold-shock' DNA-binding domain RY45_RS09990 PF02617 ATP-dependent Clp protease adaptor protein ClpS RY45_RS09995 PF00004 ATPase family associated with various cellular activities (AAA) RY45_RS09995 PF02861 Clp amino terminal domain RY45_RS09995 PF07724 AAA domain (Cdc48 subfamily) RY45_RS09995 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_RS10000 PF01176 Translation initiation factor 1A / IF-1 RY45_RS10005 PF04376 RY45_RS10005 RY45_RS10005 PF04377 RY45_RS10005 RY45_RS10010 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RY45_RS10015 PF05433 RY45_RS10015 RY45_RS10020 PF00072 Response regulator receiver domain RY45_RS10020 PF00990 GGDEF domain RY45_RS10025 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS10030 PF01037 AsnC family RY45_RS10030 PF13412 Winged helix-turn-helix DNA-binding RY45_RS10035 PF01580 FtsK/SpoIIIE family RY45_RS10035 PF09397 Ftsk gamma domain RY45_RS10035 PF13491 RY45_RS10035 RY45_RS10040 PF03548 Outer membrane lipoprotein carrier protein LolA RY45_RS10045 PF00004 ATPase family associated with various cellular activities (AAA) RY45_RS10045 PF12002 MgsA AAA+ ATPase C terminal RY45_RS10045 PF16193 RY45_RS10045 RY45_RS10055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RY45_RS10055 PF02403 Seryl-tRNA synthetase N-terminal domain RY45_RS10060 PF02674 RY45_RS10060 RY45_RS10065 PF00156 Phosphoribosyl transferase domain RY45_RS10065 PF13522 Glutamine amidotransferase domain RY45_RS10070 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RY45_RS10075 PF00005 ABC transporter RY45_RS10080 PF00005 ABC transporter RY45_RS10080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS10085 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS10085 PF12911 RY45_RS10085 RY45_RS10090 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS10095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS10100 PF00158 Sigma-54 interaction domain RY45_RS10105 PF04012 RY45_RS10105 RY45_RS10110 PF06667 RY45_RS10110 RY45_RS10115 PF04024 RY45_RS10115 RY45_RS10120 PF04317 RY45_RS10120 RY45_RS10125 PF05128 RY45_RS10125 RY45_RS10130 PF00351 Biopterin-dependent aromatic amino acid hydroxylase RY45_RS10135 PF01329 Pterin 4 alpha carbinolamine dehydratase RY45_RS10140 PF00158 Sigma-54 interaction domain RY45_RS10145 PF13689 RY45_RS10145 RY45_RS10150 PF00672 HAMP domain RY45_RS10150 PF00990 GGDEF domain RY45_RS10150 PF17152 RY45_RS10150 RY45_RS10155 PF00691 OmpA family RY45_RS10160 PF03741 RY45_RS10160 RY45_RS10165 PF01513 ATP-NAD kinase RY45_RS10170 PF08891 RY45_RS10170 RY45_RS10175 PF00501 AMP-binding enzyme RY45_RS10180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RY45_RS10180 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region RY45_RS10185 PF04172 RY45_RS10185 RY45_RS10190 PF03788 RY45_RS10190 RY45_RS10195 PF02065 Melibiase RY45_RS10205 PF00929 Exonuclease RY45_RS10205 PF08411 Exonuclease C-terminal RY45_RS10210 PF02610 L-arabinose isomerase RY45_RS10210 PF11762 L-arabinose isomerase C-terminal domain RY45_RS10215 PF00596 Class II Aldolase and Adducin N-terminal domain RY45_RS10220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RY45_RS10225 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_RS10230 PF00005 ABC transporter RY45_RS10235 PF02653 RY45_RS10235 RY45_RS10240 PF02311 AraC-like ligand binding domain RY45_RS10240 PF12833 Helix-turn-helix domain RY45_RS10245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS10245 PF03466 LysR substrate binding domain RY45_RS10250 PF02678 Pirin RY45_RS10250 PF05726 Pirin C-terminal cupin domain RY45_RS10255 PF00444 Ribosomal protein L36 RY45_RS10260 PF01197 Ribosomal protein L31 RY45_RS10265 PF06183 DinI-like family RY45_RS10270 PF11150 RY45_RS10270 RY45_RS10275 PF01863 Protein of unknown function DUF45 RY45_RS10285 PF00149 Calcineurin-like phosphoesterase RY45_RS10285 PF02872 5'-nucleotidase, C-terminal domain RY45_RS10290 PF03606 RY45_RS10290 RY45_RS10295 PF06037 RY45_RS10295 RY45_RS10300 PF01266 FAD dependent oxidoreductase RY45_RS10300 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RY45_RS10305 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_RS10305 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_RS10310 PF00583 Acetyltransferase (GNAT) family RY45_RS10315 PF14302 RY45_RS10315 RY45_RS10320 PF00285 Citrate synthase RY45_RS10325 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RY45_RS10330 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RY45_RS10335 PF00890 FAD binding domain RY45_RS10335 PF02910 Fumarate reductase flavoprotein C-term RY45_RS10340 PF13085 2Fe-2S iron-sulfur cluster binding domain RY45_RS10340 PF13534 4Fe-4S dicluster domain RY45_RS10345 PF00676 Dehydrogenase E1 component RY45_RS10345 PF02779 Transketolase, pyrimidine binding domain RY45_RS10345 PF16078 RY45_RS10345 RY45_RS10345 PF16870 RY45_RS10345 RY45_RS10350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RY45_RS10350 PF00364 Biotin-requiring enzyme RY45_RS10350 PF02817 e3 binding domain RY45_RS10355 PF00549 CoA-ligase RY45_RS10355 PF08442 ATP-grasp domain RY45_RS10360 PF00549 CoA-ligase RY45_RS10360 PF02629 CoA binding domain RY45_RS10370 PF03692 RY45_RS10370 RY45_RS10375 PF01266 FAD dependent oxidoreductase RY45_RS10380 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS10385 PF00005 ABC transporter RY45_RS10385 PF08402 TOBE domain RY45_RS10390 PF13343 Bacterial extracellular solute-binding protein RY45_RS10395 PF00392 Bacterial regulatory proteins, gntR family RY45_RS10395 PF07702 UTRA domain RY45_RS10400 PF00266 Aminotransferase class-V RY45_RS10405 PF00202 Aminotransferase class-III RY45_RS10415 PF01228 Glycine radical RY45_RS10415 PF02901 Pyruvate formate lyase RY45_RS10420 PF01226 Formate/nitrite transporter RY45_RS10425 PF02624 YcaO-like family RY45_RS10430 PF00893 Small Multidrug Resistance protein RY45_RS10435 PF01118 Semialdehyde dehydrogenase, NAD binding domain RY45_RS10435 PF02774 Semialdehyde dehydrogenase, dimerisation domain RY45_RS10440 PF00675 Insulinase (Peptidase family M16) RY45_RS10440 PF05193 Peptidase M16 inactive domain RY45_RS10445 PF01053 Cys/Met metabolism PLP-dependent enzyme RY45_RS10450 PF03171 2OG-Fe(II) oxygenase superfamily RY45_RS10450 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RY45_RS10455 PF13460 NADH(P)-binding RY45_RS10460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS10460 PF03466 LysR substrate binding domain RY45_RS10465 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS10470 PF06445 GyrI-like small molecule binding domain RY45_RS10470 PF12833 Helix-turn-helix domain RY45_RS10475 PF00593 TonB dependent receptor RY45_RS10475 PF07715 TonB-dependent Receptor Plug Domain RY45_RS10480 PF11575 RY45_RS10480 RY45_RS10485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS10485 PF03466 LysR substrate binding domain RY45_RS10490 PF01717 Cobalamin-independent synthase, Catalytic domain RY45_RS10490 PF08267 Cobalamin-independent synthase, N-terminal domain RY45_RS10495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_RS10500 PF00571 CBS domain RY45_RS10500 PF04982 RY45_RS10500 RY45_RS10505 PF07969 Amidohydrolase family RY45_RS10510 PF00440 Bacterial regulatory proteins, tetR family RY45_RS10515 PF01266 FAD dependent oxidoreductase RY45_RS10520 PF04244 Deoxyribodipyrimidine photo-lyase-related protein RY45_RS10525 PF01212 Beta-eliminating lyase RY45_RS10530 PF00768 D-alanyl-D-alanine carboxypeptidase RY45_RS10535 PF00293 NUDIX domain RY45_RS10540 PF03918 Cytochrome C biogenesis protein RY45_RS10545 PF00578 AhpC/TSA family RY45_RS10550 PF01578 RY45_RS10550 RY45_RS10550 PF16327 RY45_RS10550 RY45_RS10555 PF03916 RY45_RS10555 RY45_RS10560 PF13247 4Fe-4S dicluster domain RY45_RS10565 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RY45_RS10565 PF13435 Cytochrome c554 and c-prime RY45_RS10570 PF02335 Cytochrome c552 RY45_RS10580 PF02754 RY45_RS10580 RY45_RS10580 PF13183 4Fe-4S dicluster domain RY45_RS10585 PF00890 FAD binding domain RY45_RS10590 PF01266 FAD dependent oxidoreductase RY45_RS10590 PF04324 BFD-like [2Fe-2S] binding domain RY45_RS10595 PF02810 SEC-C motif RY45_RS10600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS10600 PF00672 HAMP domain RY45_RS10600 PF17200 RY45_RS10600 RY45_RS10605 PF00480 ROK family RY45_RS10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS10610 PF17203 RY45_RS10610 RY45_RS10615 PF00072 Response regulator receiver domain RY45_RS10615 PF12431 RY45_RS10615 RY45_RS10620 PF01970 RY45_RS10620 RY45_RS10625 PF07331 RY45_RS10625 RY45_RS10630 PF03401 Tripartite tricarboxylate transporter family receptor RY45_RS10635 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS10635 PF01464 Transglycosylase SLT domain RY45_RS10640 PF02080 TrkA-C domain RY45_RS10640 PF06826 RY45_RS10640 RY45_RS10650 PF00271 Helicase conserved C-terminal domain RY45_RS10650 PF02151 UvrB/uvrC motif RY45_RS10650 PF04851 Type III restriction enzyme, res subunit RY45_RS10650 PF12344 Ultra-violet resistance protein B RY45_RS10655 PF06803 RY45_RS10655 RY45_RS10660 PF09335 RY45_RS10660 RY45_RS10665 PF02600 Disulfide bond formation protein DsbB RY45_RS10670 PF06450 RY45_RS10670 RY45_RS10675 PF00392 Bacterial regulatory proteins, gntR family RY45_RS10675 PF07840 FadR C-terminal domain RY45_RS10680 PF04293 RY45_RS10680 RY45_RS10685 PF04285 RY45_RS10685 RY45_RS10690 PF06798 RY45_RS10690 RY45_RS10690 PF08298 PrkA AAA domain RY45_RS10695 PF00270 DEAD/DEAH box helicase RY45_RS10695 PF00271 Helicase conserved C-terminal domain RY45_RS10695 PF16124 RY45_RS10695 RY45_RS10700 PF00375 Sodium:dicarboxylate symporter family RY45_RS10705 PF03222 Tryptophan/tyrosine permease family RY45_RS10710 PF00293 NUDIX domain RY45_RS10715 PF00425 chorismate binding enzyme RY45_RS10715 PF04715 Anthranilate synthase component I, N terminal region RY45_RS10720 PF05681 RY45_RS10720 RY45_RS10720 PF05683 Fumarase C-terminus RY45_RS10730 PF14056 RY45_RS10730 RY45_RS10740 PF00343 Carbohydrate phosphorylase RY45_RS10745 PF00939 Sodium:sulfate symporter transmembrane region RY45_RS10750 PF00085 Thioredoxin RY45_RS10755 PF00072 Response regulator receiver domain RY45_RS10755 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS10755 PF01627 Hpt domain RY45_RS10755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS10760 PF00005 ABC transporter RY45_RS10760 PF00664 ABC transporter transmembrane region RY45_RS10765 PF00005 ABC transporter RY45_RS10765 PF00664 ABC transporter transmembrane region RY45_RS10770 PF14539 Domain of unknown function (DUF4442) RY45_RS10775 PF13275 S4 domain RY45_RS10780 PF01575 MaoC like domain RY45_RS10785 PF07167 RY45_RS10785 RY45_RS10790 PF09361 RY45_RS10790 RY45_RS10800 PF04250 RY45_RS10800 RY45_RS10805 PF08543 Phosphomethylpyrimidine kinase RY45_RS10810 PF03992 Antibiotic biosynthesis monooxygenase RY45_RS10815 PF00465 Iron-containing alcohol dehydrogenase RY45_RS10820 PF13673 Acetyltransferase (GNAT) domain RY45_RS10825 PF00293 NUDIX domain RY45_RS10830 PF01928 CYTH domain RY45_RS10840 PF02694 RY45_RS10840 RY45_RS10845 PF00583 Acetyltransferase (GNAT) family RY45_RS10850 PF13673 Acetyltransferase (GNAT) domain RY45_RS10855 PF00270 DEAD/DEAH box helicase RY45_RS10855 PF00271 Helicase conserved C-terminal domain RY45_RS10860 PF00255 Glutathione peroxidase RY45_RS10865 PF13640 2OG-Fe(II) oxygenase superfamily RY45_RS10870 PF01820 D-ala D-ala ligase N-terminus RY45_RS10870 PF07478 D-ala D-ala ligase C-terminus RY45_RS10875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS10880 PF03942 RY45_RS10880 RY45_RS10885 PF01925 RY45_RS10885 RY45_RS10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS10890 PF03466 LysR substrate binding domain RY45_RS10895 PF00892 EamA-like transporter family RY45_RS10900 PF12833 Helix-turn-helix domain RY45_RS10905 PF11398 Protein of unknown function (DUF2813) RY45_RS10915 PF00128 Alpha amylase, catalytic domain RY45_RS10915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_RS10945 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_RS10950 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS10955 PF01546 Peptidase family M20/M25/M40 RY45_RS10955 PF07687 Peptidase dimerisation domain RY45_RS10960 PF00365 Phosphofructokinase RY45_RS10965 PF00121 Triosephosphate isomerase RY45_RS10970 PF02698 DUF218 domain RY45_RS10975 PF13649 Methyltransferase domain RY45_RS10980 PF03882 KicB killing factor RY45_RS10980 PF17192 RY45_RS10980 RY45_RS10980 PF17193 RY45_RS10980 RY45_RS10985 PF04288 MukE-like family RY45_RS10990 PF04310 MukB N-terminal RY45_RS10990 PF13558 Putative exonuclease SbcCD, C subunit RY45_RS10990 PF16330 RY45_RS10990 RY45_RS10995 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel RY45_RS11000 PF03992 Antibiotic biosynthesis monooxygenase RY45_RS11005 PF00583 Acetyltransferase (GNAT) family RY45_RS11010 PF01327 Polypeptide deformylase RY45_RS11015 PF01965 DJ-1/PfpI family RY45_RS11020 PF13673 Acetyltransferase (GNAT) domain RY45_RS11025 PF00583 Acetyltransferase (GNAT) family RY45_RS11040 PF02567 Phenazine biosynthesis-like protein RY45_RS11045 PF07819 PGAP1-like protein RY45_RS11050 PF03831 PhnA protein RY45_RS11055 PF13679 RY45_RS11055 RY45_RS11060 PF00182 Chitinase class I RY45_RS11060 PF02839 Carbohydrate binding domain RY45_RS11065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS11070 PF04828 Glutathione-dependent formaldehyde-activating enzyme RY45_RS11075 PF00300 Histidine phosphatase superfamily (branch 1) RY45_RS11080 PF00990 GGDEF domain RY45_RS11080 PF08448 PAS fold RY45_RS11080 PF13426 PAS domain RY45_RS11085 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RY45_RS11090 PF01713 Smr domain RY45_RS11095 PF05175 Methyltransferase small domain RY45_RS11100 PF01264 Chorismate synthase RY45_RS11105 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS11110 PF00270 DEAD/DEAH box helicase RY45_RS11110 PF00271 Helicase conserved C-terminal domain RY45_RS11115 PF08808 RY45_RS11115 RY45_RS11120 PF09722 RY45_RS11120 RY45_RS11125 PF03222 Tryptophan/tyrosine permease family RY45_RS11130 PF00356 Bacterial regulatory proteins, lacI family RY45_RS11130 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_RS11135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS11135 PF00381 PTS HPr component phosphorylation site RY45_RS11140 PF00294 pfkB family carbohydrate kinase RY45_RS11145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RY45_RS11145 PF02378 Phosphotransferase system, EIIC RY45_RS11150 PF06560 Glucose-6-phosphate isomerase (GPI) RY45_RS11155 PF00356 Bacterial regulatory proteins, lacI family RY45_RS11155 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RY45_RS11165 PF03610 PTS system fructose IIA component RY45_RS11170 PF03830 PTS system sorbose subfamily IIB component RY45_RS11175 PF03609 RY45_RS11175 RY45_RS11180 PF03613 RY45_RS11180 RY45_RS11185 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) RY45_RS11190 PF06945 RY45_RS11190 RY45_RS11195 PF03562 MltA specific insert domain RY45_RS11195 PF06725 3D domain RY45_RS11200 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_RS11205 PF00268 Ribonucleotide reductase, small chain RY45_RS11210 PF00317 Ribonucleotide reductase, all-alpha domain RY45_RS11210 PF02867 Ribonucleotide reductase, barrel domain RY45_RS11210 PF03477 ATP cone domain RY45_RS11215 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS11220 PF13489 Methyltransferase domain RY45_RS11225 PF00521 DNA gyrase/topoisomerase IV, subunit A RY45_RS11225 PF03989 DNA gyrase C-terminal domain, beta-propeller RY45_RS11230 PF04055 Radical SAM superfamily RY45_RS11235 PF08238 Sel1 repeat RY45_RS11240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RY45_RS11240 PF02824 TGS domain RY45_RS11240 PF03129 Anticodon binding domain RY45_RS11240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RY45_RS11245 PF00707 Translation initiation factor IF-3, C-terminal domain RY45_RS11245 PF05198 Translation initiation factor IF-3, N-terminal domain RY45_RS11250 PF01632 Ribosomal protein L35 RY45_RS11255 PF00453 Ribosomal protein L20 RY45_RS11260 PF01409 tRNA synthetases class II core domain (F) RY45_RS11260 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RY45_RS11265 PF01588 Putative tRNA binding domain RY45_RS11265 PF03147 Ferredoxin-fold anticodon binding domain RY45_RS11265 PF03483 B3/4 domain RY45_RS11265 PF03484 tRNA synthetase B5 domain RY45_RS11270 PF00216 Bacterial DNA-binding protein RY45_RS11280 PF00072 Response regulator receiver domain RY45_RS11285 PF00583 Acetyltransferase (GNAT) family RY45_RS11290 PF02146 Sir2 family RY45_RS11300 PF00990 GGDEF domain RY45_RS11305 PF00356 Bacterial regulatory proteins, lacI family RY45_RS11305 PF13377 Periplasmic binding protein-like domain RY45_RS11310 PF00294 pfkB family carbohydrate kinase RY45_RS11315 PF13407 Periplasmic binding protein domain RY45_RS11320 PF02653 RY45_RS11320 RY45_RS11325 PF00005 ABC transporter RY45_RS11330 PF05025 RbsD / FucU transport protein family RY45_RS11335 PF02798 Glutathione S-transferase, N-terminal domain RY45_RS11335 PF13410 Glutathione S-transferase, C-terminal domain RY45_RS11345 PF11205 RY45_RS11345 RY45_RS11350 PF01171 PP-loop family RY45_RS11355 PF00582 Universal stress protein family RY45_RS11360 PF00027 Cyclic nucleotide-binding domain RY45_RS11360 PF13545 Crp-like helix-turn-helix domain RY45_RS11365 PF13386 RY45_RS11365 RY45_RS11370 PF03597 RY45_RS11370 RY45_RS11375 PF00122 E1-E2 ATPase RY45_RS11375 PF00403 Heavy-metal-associated domain RY45_RS11375 PF00702 haloacid dehalogenase-like hydrolase RY45_RS11375 PF12156 RY45_RS11375 RY45_RS11380 PF05751 RY45_RS11380 RY45_RS11385 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RY45_RS11385 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RY45_RS11390 PF05545 RY45_RS11390 RY45_RS11395 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO RY45_RS11400 PF00115 Cytochrome C and Quinol oxidase polypeptide I RY45_RS11410 PF13185 GAF domain RY45_RS11415 PF04352 ProQ/FINO family RY45_RS11420 PF00595 PDZ domain (Also known as DHR or GLGF) RY45_RS11420 PF03572 Peptidase family S41 RY45_RS11420 PF11818 RY45_RS11420 RY45_RS11425 PF01433 Peptidase family M1 RY45_RS11425 PF11940 Domain of unknown function (DUF3458) RY45_RS11430 PF11197 RY45_RS11430 RY45_RS11435 PF05088 RY45_RS11435 RY45_RS11440 PF01180 Dihydroorotate dehydrogenase RY45_RS11445 PF07126 RY45_RS11445 RY45_RS11450 PF01170 Putative RNA methylase family UPF0020 RY45_RS11450 PF02926 THUMP domain RY45_RS11450 PF10672 S-adenosylmethionine-dependent methyltransferase RY45_RS11455 PF05768 Glutaredoxin-like domain (DUF836) RY45_RS11460 PF00005 ABC transporter RY45_RS11460 PF12848 ABC transporter RY45_RS11460 PF16326 RY45_RS11460 RY45_RS11465 PF11949 RY45_RS11465 RY45_RS11470 PF07977 FabA-like domain RY45_RS11475 PF05362 Lon protease (S16) C-terminal proteolytic domain RY45_RS11475 PF13654 AAA domain RY45_RS11480 PF00589 Phage integrase family RY45_RS11485 PF07130 YebG protein RY45_RS11490 PF07819 PGAP1-like protein RY45_RS11495 PF00106 short chain dehydrogenase RY45_RS11495 PF07993 Male sterility protein RY45_RS11500 PF05597 RY45_RS11500 RY45_RS11505 PF01734 Patatin-like phospholipase RY45_RS11510 PF00440 Bacterial regulatory proteins, tetR family RY45_RS11510 PF13972 Bacterial transcriptional repressor RY45_RS11520 PF03007 RY45_RS11520 RY45_RS11520 PF06974 RY45_RS11520 RY45_RS11525 PF09650 RY45_RS11525 RY45_RS11535 PF03972 MmgE/PrpD family RY45_RS11540 PF00285 Citrate synthase RY45_RS11545 PF13714 Phosphoenolpyruvate phosphomutase RY45_RS11550 PF04403 RY45_RS11550 RY45_RS11555 PF04403 RY45_RS11555 RY45_RS11560 PF02470 RY45_RS11560 RY45_RS11565 PF01189 NOL1/NOP2/sun family RY45_RS11565 PF13636 pre-rRNA processing and ribosome biogenesis RY45_RS11565 PF17125 RY45_RS11565 RY45_RS11575 PF00589 Phage integrase family RY45_RS11580 PF01026 TatD related DNase RY45_RS11585 PF09115 DNA polymerase III, delta subunit, C terminal RY45_RS11585 PF13177 DNA polymerase III, delta subunit RY45_RS11590 PF02223 Thymidylate kinase RY45_RS11595 PF02618 YceG-like family RY45_RS11600 PF01063 Aminotransferase class IV RY45_RS11605 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_RS11605 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_RS11610 PF00550 Phosphopantetheine attachment site RY45_RS11615 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS11620 PF00698 Acyl transferase domain RY45_RS11625 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RY45_RS11625 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_RS11630 PF02504 Fatty acid synthesis protein RY45_RS11635 PF01783 Ribosomal L32p protein family RY45_RS11640 PF02620 RY45_RS11640 RY45_RS11645 PF01852 START domain RY45_RS11650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS11650 PF03466 LysR substrate binding domain RY45_RS11655 PF07690 Major Facilitator Superfamily RY45_RS11660 PF02545 Maf-like protein RY45_RS11665 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS11670 PF00849 RNA pseudouridylate synthase RY45_RS11670 PF01479 S4 domain RY45_RS11675 PF00575 S1 RNA binding domain RY45_RS11675 PF10150 Ribonuclease E/G family RY45_RS11680 PF01384 RY45_RS11680 RY45_RS11685 PF00692 dUTPase RY45_RS11690 PF00485 Phosphoribulokinase / Uridine kinase family RY45_RS11695 PF01883 Domain of unknown function DUF59 RY45_RS11695 PF10609 ParA/MinD ATPase like RY45_RS11700 PF01588 Putative tRNA binding domain RY45_RS11700 PF08264 Anticodon-binding domain of tRNA RY45_RS11700 PF09334 tRNA synthetases class I (M) RY45_RS11705 PF00043 Glutathione S-transferase, C-terminal domain RY45_RS11705 PF02798 Glutathione S-transferase, N-terminal domain RY45_RS11710 PF00708 Acylphosphatase RY45_RS11715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS11720 PF10672 S-adenosylmethionine-dependent methyltransferase RY45_RS11725 PF13410 Glutathione S-transferase, C-terminal domain RY45_RS11725 PF13417 Glutathione S-transferase, N-terminal domain RY45_RS11730 PF01757 RY45_RS11730 RY45_RS11740 PF00586 AIR synthase related protein, N-terminal domain RY45_RS11740 PF02769 AIR synthase related protein, C-terminal domain RY45_RS11750 PF00753 Metallo-beta-lactamase superfamily RY45_RS11755 PF00072 Response regulator receiver domain RY45_RS11755 PF01966 HD domain RY45_RS11760 PF00072 Response regulator receiver domain RY45_RS11760 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS11760 PF01627 Hpt domain RY45_RS11760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS11765 PF01386 Ribosomal L25p family RY45_RS11775 PF00270 DEAD/DEAH box helicase RY45_RS11775 PF00271 Helicase conserved C-terminal domain RY45_RS11775 PF04408 Helicase associated domain (HA2) RY45_RS11775 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RY45_RS11775 PF11898 RY45_RS11775 RY45_RS11780 PF00571 CBS domain RY45_RS11785 PF00196 Bacterial regulatory proteins, luxR family RY45_RS11790 PF13231 RY45_RS11790 RY45_RS11795 PF02575 YbaB/EbfC DNA-binding family RY45_RS11800 PF12169 DNA polymerase III subunits gamma and tau domain III RY45_RS11800 PF12170 DNA polymerase III tau subunit V interacting with alpha RY45_RS11800 PF13177 DNA polymerase III, delta subunit RY45_RS11805 PF00156 Phosphoribosyl transferase domain RY45_RS11810 PF04304 RY45_RS11810 RY45_RS11815 PF01207 Dihydrouridine synthase (Dus) RY45_RS11825 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS11830 PF00570 HRDC domain RY45_RS11830 PF01612 3'-5' exonuclease RY45_RS11835 PF00501 AMP-binding enzyme RY45_RS11835 PF13193 AMP-binding enzyme C-terminal domain RY45_RS11840 PF00561 alpha/beta hydrolase fold RY45_RS11845 PF03843 RY45_RS11845 RY45_RS11850 PF00814 Glycoprotease family RY45_RS11855 PF00270 DEAD/DEAH box helicase RY45_RS11855 PF13307 Helicase C-terminal domain RY45_RS11865 PF01634 ATP phosphoribosyltransferase RY45_RS11865 PF08029 HisG, C-terminal domain RY45_RS11870 PF00815 Histidinol dehydrogenase RY45_RS11875 PF00155 Aminotransferase class I and II RY45_RS11880 PF00475 Imidazoleglycerol-phosphate dehydratase RY45_RS11880 PF13242 HAD-hyrolase-like RY45_RS11885 PF00117 Glutamine amidotransferase class-I RY45_RS11890 PF00977 Histidine biosynthesis protein RY45_RS11895 PF00072 Response regulator receiver domain RY45_RS11895 PF13487 HD domain RY45_RS11900 PF08448 PAS fold RY45_RS11900 PF13188 PAS domain RY45_RS11905 PF00072 Response regulator receiver domain RY45_RS11905 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS11905 PF01627 Hpt domain RY45_RS11905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS11905 PF08447 PAS fold RY45_RS11905 PF13426 PAS domain RY45_RS11905 PF13493 Domain of unknown function (DUF4118) RY45_RS11910 PF00977 Histidine biosynthesis protein RY45_RS11915 PF01502 Phosphoribosyl-AMP cyclohydrolase RY45_RS11915 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RY45_RS11930 PF00501 AMP-binding enzyme RY45_RS11930 PF13193 AMP-binding enzyme C-terminal domain RY45_RS11935 PF03606 RY45_RS11935 RY45_RS11945 PF05433 RY45_RS11945 RY45_RS11950 PF00932 Lamin Tail Domain RY45_RS11950 PF03160 Calx-beta domain RY45_RS11950 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_RS11955 PF00111 2Fe-2S iron-sulfur cluster binding domain RY45_RS11955 PF01799 [2Fe-2S] binding domain RY45_RS11960 PF00941 FAD binding domain in molybdopterin dehydrogenase RY45_RS11960 PF03450 CO dehydrogenase flavoprotein C-terminal domain RY45_RS11965 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_RS11965 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RY45_RS11970 PF00860 Permease family RY45_RS11975 PF01979 Amidohydrolase family RY45_RS11980 PF00860 Permease family RY45_RS11985 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_RS11985 PF01799 [2Fe-2S] binding domain RY45_RS11985 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RY45_RS11990 PF00941 FAD binding domain in molybdopterin dehydrogenase RY45_RS11995 PF01979 Amidohydrolase family RY45_RS12000 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS12000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RY45_RS12005 PF12804 MobA-like NTP transferase domain RY45_RS12015 PF02625 XdhC and CoxI family RY45_RS12015 PF13478 XdhC Rossmann domain RY45_RS12020 PF00892 EamA-like transporter family RY45_RS12025 PF00696 Amino acid kinase family RY45_RS12030 PF01979 Amidohydrolase family RY45_RS12035 PF01546 Peptidase family M20/M25/M40 RY45_RS12035 PF07687 Peptidase dimerisation domain RY45_RS12040 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS12045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_RS12045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_RS12050 PF00158 Sigma-54 interaction domain RY45_RS12050 PF02954 Bacterial regulatory protein, Fis family RY45_RS12060 PF03547 RY45_RS12060 RY45_RS12065 PF07152 YaeQ protein RY45_RS12070 PF00378 Enoyl-CoA hydratase/isomerase family RY45_RS12070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RY45_RS12070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RY45_RS12075 PF00108 Thiolase, N-terminal domain RY45_RS12075 PF02803 Thiolase, C-terminal domain RY45_RS12080 PF07726 ATPase family associated with various cellular activities (AAA) RY45_RS12085 PF01882 RY45_RS12085 RY45_RS12090 PF14316 RY45_RS12090 RY45_RS12095 PF00092 von Willebrand factor type A domain RY45_RS12100 PF07719 Tetratricopeptide repeat RY45_RS12100 PF13519 von Willebrand factor type A domain RY45_RS12105 PF13584 RY45_RS12105 RY45_RS12110 PF04542 Sigma-70 region 2 RY45_RS12110 PF08281 Sigma-70, region 4 RY45_RS12115 PF11859 RY45_RS12115 RY45_RS12120 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RY45_RS12125 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RY45_RS12130 PF00563 EAL domain RY45_RS12130 PF08668 HDOD domain RY45_RS12135 PF00108 Thiolase, N-terminal domain RY45_RS12135 PF02803 Thiolase, C-terminal domain RY45_RS12140 PF13411 MerR HTH family regulatory protein RY45_RS12145 PF00375 Sodium:dicarboxylate symporter family RY45_RS12150 PF06865 Protein of unknown function (DUF1255) RY45_RS12155 PF03313 RY45_RS12155 RY45_RS12155 PF03315 Serine dehydratase beta chain RY45_RS12160 PF03313 RY45_RS12160 RY45_RS12160 PF03315 Serine dehydratase beta chain RY45_RS12165 PF13406 Transglycosylase SLT domain RY45_RS12170 PF05166 YcgL domain RY45_RS12175 PF03775 Septum formation inhibitor MinC, C-terminal domain RY45_RS12175 PF05209 Septum formation inhibitor MinC, N-terminal domain RY45_RS12180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_RS12185 PF03776 Septum formation topological specificity factor MinE RY45_RS12190 PF04269 Protein of unknown function, DUF440 RY45_RS12195 PF00912 Transglycosylase RY45_RS12200 PF04269 Protein of unknown function, DUF440 RY45_RS12205 PF06945 RY45_RS12205 RY45_RS12210 PF13509 S1 domain RY45_RS12215 PF03695 Uncharacterised protein family (UPF0149) RY45_RS12220 PF12802 MarR family RY45_RS12225 PF14056 RY45_RS12225 RY45_RS12235 PF02525 Flavodoxin-like fold RY45_RS12240 PF00892 EamA-like transporter family RY45_RS12245 PF01370 NAD dependent epimerase/dehydratase family RY45_RS12245 PF02222 ATP-grasp domain RY45_RS12250 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS12255 PF14255 RY45_RS12255 RY45_RS12260 PF00677 Lumazine binding domain RY45_RS12265 PF06786 RY45_RS12265 RY45_RS12270 PF01554 MatE RY45_RS12300 PF00136 DNA polymerase family B RY45_RS12300 PF03104 DNA polymerase family B, exonuclease domain RY45_RS12305 PF04073 Aminoacyl-tRNA editing domain RY45_RS12310 PF00990 GGDEF domain RY45_RS12320 PF01163 RIO1 family RY45_RS12325 PF03279 RY45_RS12325 RY45_RS12330 PF03279 RY45_RS12330 RY45_RS12335 PF03595 Voltage-dependent anion channel RY45_RS12340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS12340 PF03466 LysR substrate binding domain RY45_RS12345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RY45_RS12350 PF01261 Xylose isomerase-like TIM barrel RY45_RS12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS12355 PF03466 LysR substrate binding domain RY45_RS12360 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS12365 PF01966 HD domain RY45_RS12370 PF00174 Oxidoreductase molybdopterin binding domain RY45_RS12375 PF00563 EAL domain RY45_RS12375 PF00990 GGDEF domain RY45_RS12380 PF00232 Glycosyl hydrolase family 1 RY45_RS12385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS12385 PF03466 LysR substrate binding domain RY45_RS12395 PF00239 Resolvase, N terminal domain RY45_RS12395 PF09339 IclR helix-turn-helix domain RY45_RS12400 PF10980 Protein of unknown function (DUF2787) RY45_RS12405 PF04002 RadC-like JAB domain RY45_RS12410 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RY45_RS12410 PF04851 Type III restriction enzyme, res subunit RY45_RS12415 PF14281 RY45_RS12415 RY45_RS12420 PF01420 Type I restriction modification DNA specificity domain RY45_RS12425 PF02384 N-6 DNA Methylase RY45_RS12425 PF12161 HsdM N-terminal domain RY45_RS12430 PF08706 RY45_RS12430 RY45_RS12430 PF13155 Toprim-like RY45_RS12435 PF12872 OST-HTH/LOTUS domain RY45_RS12440 PF00665 Integrase core domain RY45_RS12450 PF00589 Phage integrase family RY45_RS12455 PF01925 RY45_RS12455 RY45_RS12460 PF13520 Amino acid permease RY45_RS12465 PF00106 short chain dehydrogenase RY45_RS12470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RY45_RS12470 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RY45_RS12475 PF16113 RY45_RS12475 RY45_RS12480 PF00378 Enoyl-CoA hydratase/isomerase family RY45_RS12485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_RS12485 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_RS12485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_RS12490 PF00171 Aldehyde dehydrogenase family RY45_RS12495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_RS12495 PF02770 Acyl-CoA dehydrogenase, middle domain RY45_RS12495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_RS12500 PF01039 Carboxyl transferase domain RY45_RS12505 PF00378 Enoyl-CoA hydratase/isomerase family RY45_RS12510 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RY45_RS12510 PF00364 Biotin-requiring enzyme RY45_RS12510 PF02785 Biotin carboxylase C-terminal domain RY45_RS12510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RY45_RS12515 PF00682 HMGL-like RY45_RS12520 PF13411 MerR HTH family regulatory protein RY45_RS12525 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS12530 PF05359 RY45_RS12530 RY45_RS12535 PF01184 RY45_RS12535 RY45_RS12540 PF06167 Glucose-regulated metallo-peptidase M90 RY45_RS12545 PF00583 Acetyltransferase (GNAT) family RY45_RS12550 PF01235 RY45_RS12550 RY45_RS12565 PF13438 RY45_RS12565 RY45_RS12570 PF05929 RY45_RS12570 RY45_RS12575 PF00378 Enoyl-CoA hydratase/isomerase family RY45_RS12580 PF00027 Cyclic nucleotide-binding domain RY45_RS12580 PF03445 RY45_RS12580 RY45_RS12580 PF10335 RY45_RS12580 RY45_RS12585 PF00929 Exonuclease RY45_RS12590 PF04341 RY45_RS12590 RY45_RS12595 PF00474 Sodium:solute symporter family RY45_RS12600 PF00005 ABC transporter RY45_RS12600 PF12848 ABC transporter RY45_RS12605 PF13616 PPIC-type PPIASE domain RY45_RS12605 PF13624 SurA N-terminal domain RY45_RS12615 PF00004 ATPase family associated with various cellular activities (AAA) RY45_RS12615 PF02190 ATP-dependent protease La (LON) domain RY45_RS12615 PF05362 Lon protease (S16) C-terminal proteolytic domain RY45_RS12620 PF06689 ClpX C4-type zinc finger RY45_RS12620 PF07724 AAA domain (Cdc48 subfamily) RY45_RS12620 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_RS12625 PF00574 Clp protease RY45_RS12630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_RS12630 PF05697 Bacterial trigger factor protein (TF) RY45_RS12630 PF05698 Bacterial trigger factor protein (TF) C-terminus RY45_RS12635 PF03733 RY45_RS12635 RY45_RS12640 PF13023 HD domain RY45_RS12645 PF02687 RY45_RS12645 RY45_RS12645 PF12704 MacB-like periplasmic core domain RY45_RS12650 PF00005 ABC transporter RY45_RS12655 PF02687 RY45_RS12655 RY45_RS12655 PF12704 MacB-like periplasmic core domain RY45_RS12665 PF00270 DEAD/DEAH box helicase RY45_RS12665 PF00271 Helicase conserved C-terminal domain RY45_RS12665 PF02559 CarD-like/TRCF domain RY45_RS12665 PF03461 TRCF domain RY45_RS12670 PF00316 Fructose-1-6-bisphosphatase RY45_RS12675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS12680 PF00892 EamA-like transporter family RY45_RS12685 PF06526 Protein of unknown function (DUF1107) RY45_RS12690 PF00300 Histidine phosphatase superfamily (branch 1) RY45_RS12695 PF00675 Insulinase (Peptidase family M16) RY45_RS12695 PF05193 Peptidase M16 inactive domain RY45_RS12695 PF16187 RY45_RS12695 RY45_RS12700 PF05724 Thiopurine S-methyltransferase (TPMT) RY45_RS12705 PF07714 Protein tyrosine kinase RY45_RS12710 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS12715 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RY45_RS12715 PF12833 Helix-turn-helix domain RY45_RS12730 PF00117 Glutamine amidotransferase class-I RY45_RS12730 PF00958 GMP synthase C terminal domain RY45_RS12730 PF02540 NAD synthase RY45_RS12735 PF00478 IMP dehydrogenase / GMP reductase domain RY45_RS12735 PF00571 CBS domain RY45_RS12740 PF02705 RY45_RS12740 RY45_RS12745 PF03544 Gram-negative bacterial TonB protein C-terminal RY45_RS12750 PF01618 RY45_RS12750 RY45_RS12755 PF02472 Biopolymer transport protein ExbD/TolR RY45_RS12760 PF00892 EamA-like transporter family RY45_RS12765 PF02601 RY45_RS12765 RY45_RS12765 PF13742 RY45_RS12765 RY45_RS12770 PF04055 Radical SAM superfamily RY45_RS12775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS12775 PF00672 HAMP domain RY45_RS12780 PF00793 DAHP synthetase I family RY45_RS12785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RY45_RS12790 PF00266 Aminotransferase class-V RY45_RS12795 PF00766 Electron transfer flavoprotein FAD-binding domain RY45_RS12795 PF01012 Electron transfer flavoprotein domain RY45_RS12800 PF01012 Electron transfer flavoprotein domain RY45_RS12805 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase RY45_RS12805 PF13450 NAD(P)-binding Rossmann-like domain RY45_RS12810 PF01544 CorA-like Mg2+ transporter protein RY45_RS12815 PF11143 RY45_RS12815 RY45_RS12825 PF07690 Major Facilitator Superfamily RY45_RS12830 PF00593 TonB dependent receptor RY45_RS12830 PF07715 TonB-dependent Receptor Plug Domain RY45_RS12835 PF01032 FecCD transport family RY45_RS12840 PF01032 FecCD transport family RY45_RS12845 PF00005 ABC transporter RY45_RS12850 PF01648 4'-phosphopantetheinyl transferase superfamily RY45_RS12855 PF01497 Periplasmic binding protein RY45_RS12860 PF00501 AMP-binding enzyme RY45_RS12860 PF13193 AMP-binding enzyme C-terminal domain RY45_RS12865 PF00501 AMP-binding enzyme RY45_RS12865 PF00550 Phosphopantetheine attachment site RY45_RS12865 PF00668 Condensation domain RY45_RS12865 PF13745 HxxPF-repeated domain RY45_RS12870 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS12875 PF00501 AMP-binding enzyme RY45_RS12875 PF00550 Phosphopantetheine attachment site RY45_RS12875 PF00668 Condensation domain RY45_RS12875 PF13193 AMP-binding enzyme C-terminal domain RY45_RS12880 PF00550 Phosphopantetheine attachment site RY45_RS12880 PF00857 Isochorismatase family RY45_RS12885 PF00501 AMP-binding enzyme RY45_RS12885 PF13193 AMP-binding enzyme C-terminal domain RY45_RS12890 PF00425 chorismate binding enzyme RY45_RS12895 PF07273 Protein of unknown function (DUF1439) RY45_RS12905 PF00483 Nucleotidyl transferase RY45_RS12910 PF00563 EAL domain RY45_RS12910 PF00990 GGDEF domain RY45_RS12920 PF11042 RY45_RS12920 RY45_RS12925 PF00294 pfkB family carbohydrate kinase RY45_RS12930 PF01124 MAPEG family RY45_RS12935 PF00762 Ferrochelatase RY45_RS12940 PF00406 Adenylate kinase RY45_RS12940 PF05191 Adenylate kinase, active site lid RY45_RS12945 PF00183 Hsp90 protein RY45_RS12945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS12950 PF02132 RecR protein RY45_RS12950 PF13662 Toprim domain RY45_RS12955 PF02634 FdhD/NarQ family RY45_RS12960 PF00158 Sigma-54 interaction domain RY45_RS12960 PF13185 GAF domain RY45_RS12970 PF00384 Molybdopterin oxidoreductase RY45_RS12970 PF01568 Molydopterin dinucleotide binding domain RY45_RS12975 PF00384 Molybdopterin oxidoreductase RY45_RS12975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS12980 PF12838 4Fe-4S dicluster domain RY45_RS12985 PF02705 RY45_RS12985 RY45_RS12990 PF00037 4Fe-4S binding domain RY45_RS12990 PF12798 4Fe-4S binding domain RY45_RS12990 PF12837 4Fe-4S binding domain RY45_RS12995 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RY45_RS12995 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RY45_RS13000 PF00146 NADH dehydrogenase RY45_RS13005 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RY45_RS13005 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RY45_RS13005 PF00374 Nickel-dependent hydrogenase RY45_RS13010 PF12838 4Fe-4S dicluster domain RY45_RS13015 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RY45_RS13020 PF07450 RY45_RS13020 RY45_RS13025 PF01750 Hydrogenase maturation protease RY45_RS13030 PF03841 L-seryl-tRNA selenium transferase RY45_RS13030 PF12390 RY45_RS13030 RY45_RS13035 PF00009 Elongation factor Tu GTP binding domain RY45_RS13035 PF03144 Elongation factor Tu domain 2 RY45_RS13035 PF09107 Elongation factor SelB, winged helix RY45_RS13040 PF00708 Acylphosphatase RY45_RS13040 PF01300 Telomere recombination RY45_RS13040 PF07503 HypF finger RY45_RS13045 PF01455 HupF/HypC family RY45_RS13050 PF01924 Hydrogenase formation hypA family RY45_RS13055 PF00586 AIR synthase related protein, N-terminal domain RY45_RS13055 PF02769 AIR synthase related protein, C-terminal domain RY45_RS13060 PF01155 Hydrogenase expression/synthesis hypA family RY45_RS13065 PF02492 CobW/HypB/UreG, nucleotide-binding domain RY45_RS13070 PF00005 ABC transporter RY45_RS13075 PF00005 ABC transporter RY45_RS13080 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS13085 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS13090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS13095 PF11939 Protein of unknown function (DUF3457) RY45_RS13100 PF01750 Hydrogenase maturation protease RY45_RS13105 PF00374 Nickel-dependent hydrogenase RY45_RS13115 PF13247 4Fe-4S dicluster domain RY45_RS13120 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RY45_RS13120 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RY45_RS13125 PF00072 Response regulator receiver domain RY45_RS13130 PF13466 STAS domain RY45_RS13135 PF01584 CheW-like domain RY45_RS13135 PF01627 Hpt domain RY45_RS13135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS13135 PF02895 Signal transducing histidine kinase, homodimeric domain RY45_RS13140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS13140 PF12729 RY45_RS13140 RY45_RS13145 PF01584 CheW-like domain RY45_RS13150 PF01739 CheR methyltransferase, SAM binding domain RY45_RS13150 PF03705 CheR methyltransferase, all-alpha domain RY45_RS13155 PF00072 Response regulator receiver domain RY45_RS13155 PF01339 CheB methylesterase RY45_RS13160 PF00072 Response regulator receiver domain RY45_RS13160 PF00563 EAL domain RY45_RS13165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS13165 PF00672 HAMP domain RY45_RS13165 PF12729 RY45_RS13165 RY45_RS13170 PF00842 Alanine racemase, C-terminal domain RY45_RS13170 PF01168 Alanine racemase, N-terminal domain RY45_RS13175 PF03483 B3/4 domain RY45_RS13180 PF01381 Helix-turn-helix RY45_RS13180 PF07883 Cupin domain RY45_RS13190 PF00916 RY45_RS13190 RY45_RS13190 PF01740 STAS domain RY45_RS13205 PF03350 RY45_RS13205 RY45_RS13220 PF03239 RY45_RS13220 RY45_RS13225 PF01593 Flavin containing amine oxidoreductase RY45_RS13240 PF07690 Major Facilitator Superfamily RY45_RS13245 PF14267 RY45_RS13245 RY45_RS13250 PF00005 ABC transporter RY45_RS13255 PF02687 RY45_RS13255 RY45_RS13255 PF12704 MacB-like periplasmic core domain RY45_RS13260 PF07143 Hydroxyneurosporene synthase (CrtC) RY45_RS13260 PF17186 RY45_RS13260 RY45_RS13280 PF01565 FAD binding domain RY45_RS13280 PF02754 RY45_RS13280 RY45_RS13280 PF02913 FAD linked oxidases, C-terminal domain RY45_RS13280 PF13183 4Fe-4S dicluster domain RY45_RS13285 PF02589 Uncharacterised ACR, YkgG family COG1556 RY45_RS13290 PF02589 Uncharacterised ACR, YkgG family COG1556 RY45_RS13290 PF11870 RY45_RS13290 RY45_RS13290 PF13183 4Fe-4S dicluster domain RY45_RS13295 PF02754 RY45_RS13295 RY45_RS13300 PF02652 RY45_RS13300 RY45_RS13305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS13305 PF03466 LysR substrate binding domain RY45_RS13310 PF13467 Ribbon-helix-helix domain RY45_RS13315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS13320 PF00561 alpha/beta hydrolase fold RY45_RS13325 PF04237 YjbR RY45_RS13330 PF13673 Acetyltransferase (GNAT) domain RY45_RS13335 PF12290 RY45_RS13335 RY45_RS13345 PF01625 Peptide methionine sulfoxide reductase RY45_RS13350 PF00583 Acetyltransferase (GNAT) family RY45_RS13350 PF00696 Amino acid kinase family RY45_RS13355 PF00696 Amino acid kinase family RY45_RS13365 PF00884 Sulfatase RY45_RS13370 PF02016 LD-carboxypeptidase RY45_RS13375 PF01734 Patatin-like phospholipase RY45_RS13380 PF17179 RY45_RS13380 RY45_RS13385 PF00175 Oxidoreductase NAD-binding domain RY45_RS13385 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RY45_RS13390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_RS13390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_RS13390 PF14697 4Fe-4S dicluster domain RY45_RS13395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_RS13395 PF10414 Sirohaem synthase dimerisation region RY45_RS13395 PF13241 Putative NAD(P)-binding RY45_RS13395 PF14824 Sirohaem biosynthesis protein central RY45_RS13405 PF01906 Putative heavy-metal-binding RY45_RS13415 PF05791 Bacillus haemolytic enterotoxin (HBL) RY45_RS13425 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS13430 PF05728 Uncharacterised protein family (UPF0227) RY45_RS13435 PF00860 Permease family RY45_RS13440 PF01432 Peptidase family M3 RY45_RS13440 PF08439 Oligopeptidase F RY45_RS13445 PF01432 Peptidase family M3 RY45_RS13445 PF08439 Oligopeptidase F RY45_RS13450 PF05661 RY45_RS13450 RY45_RS13455 PF06041 Bacterial protein of unknown function (DUF924) RY45_RS13460 PF02355 Protein export membrane protein RY45_RS13460 PF07549 SecD/SecF GG Motif RY45_RS13465 PF02355 Protein export membrane protein RY45_RS13465 PF07549 SecD/SecF GG Motif RY45_RS13465 PF13721 SecD export protein N-terminal TM region RY45_RS13480 PF01636 Phosphotransferase enzyme family RY45_RS13485 PF13036 Protein of unknown function (DUF3897) RY45_RS13490 PF07233 Protein of unknown function (DUF1425) RY45_RS13500 PF01230 HIT domain RY45_RS13505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS13505 PF00672 HAMP domain RY45_RS13510 PF01242 6-pyruvoyl tetrahydropterin synthase RY45_RS13515 PF01979 Amidohydrolase family RY45_RS13530 PF00375 Sodium:dicarboxylate symporter family RY45_RS13535 PF04191 Phospholipid methyltransferase RY45_RS13540 PF00842 Alanine racemase, C-terminal domain RY45_RS13540 PF01168 Alanine racemase, N-terminal domain RY45_RS13545 PF03741 RY45_RS13545 RY45_RS13550 PF00005 ABC transporter RY45_RS13550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS13555 PF00005 ABC transporter RY45_RS13555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS13560 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS13560 PF12911 RY45_RS13560 RY45_RS13565 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS13570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS13575 PF01914 RY45_RS13575 RY45_RS13580 PF10014 2OG-Fe dioxygenase RY45_RS13585 PF00171 Aldehyde dehydrogenase family RY45_RS13585 PF00465 Iron-containing alcohol dehydrogenase RY45_RS13590 PF11871 RY45_RS13590 RY45_RS13590 PF13487 HD domain RY45_RS13595 PF06580 RY45_RS13595 RY45_RS13595 PF07694 5TMR of 5TMR-LYT RY45_RS13600 PF00072 Response regulator receiver domain RY45_RS13600 PF04397 LytTr DNA-binding domain RY45_RS13605 PF02554 RY45_RS13605 RY45_RS13605 PF13722 RY45_RS13605 RY45_RS13610 PF11742 RY45_RS13610 RY45_RS13615 PF16576 RY45_RS13615 RY45_RS13620 PF00271 Helicase conserved C-terminal domain RY45_RS13620 PF04851 Type III restriction enzyme, res subunit RY45_RS13625 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RY45_RS13630 PF00462 Glutaredoxin RY45_RS13635 PF07866 Protein of unknown function (DUF1653) RY45_RS13640 PF00155 Aminotransferase class I and II RY45_RS13645 PF03606 RY45_RS13645 RY45_RS13650 PF07055 Enoyl reductase FAD binding domain RY45_RS13650 PF12241 Trans-2-enoyl-CoA reductase catalytic region RY45_RS13650 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RY45_RS13655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS13655 PF08447 PAS fold RY45_RS13655 PF13426 PAS domain RY45_RS13665 PF00892 EamA-like transporter family RY45_RS13670 PF02508 RY45_RS13670 RY45_RS13675 PF04060 Putative Fe-S cluster RY45_RS13675 PF14697 4Fe-4S dicluster domain RY45_RS13680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RY45_RS13680 PF10531 SLBB domain RY45_RS13680 PF12838 4Fe-4S dicluster domain RY45_RS13680 PF13375 RnfC Barrel sandwich hybrid domain RY45_RS13685 PF03116 RY45_RS13685 RY45_RS13690 PF04205 FMN-binding domain RY45_RS13695 PF02508 RY45_RS13695 RY45_RS13700 PF00633 Helix-hairpin-helix motif RY45_RS13700 PF00730 HhH-GPD superfamily base excision DNA repair protein RY45_RS13700 PF10576 Iron-sulfur binding domain of endonuclease III RY45_RS13705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS13710 PF00691 OmpA family RY45_RS13715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS13715 PF00672 HAMP domain RY45_RS13715 PF08376 Nitrate and nitrite sensing RY45_RS13720 PF00929 Exonuclease RY45_RS13725 PF03553 RY45_RS13725 RY45_RS13725 PF13726 RY45_RS13725 RY45_RS13730 PF00270 DEAD/DEAH box helicase RY45_RS13730 PF00271 Helicase conserved C-terminal domain RY45_RS13730 PF03880 DbpA RNA binding domain RY45_RS13735 PF03061 Thioesterase superfamily RY45_RS13745 PF01565 FAD binding domain RY45_RS13745 PF02913 FAD linked oxidases, C-terminal domain RY45_RS13745 PF13183 4Fe-4S dicluster domain RY45_RS13750 PF01545 Cation efflux family RY45_RS13755 PF00571 CBS domain RY45_RS13755 PF03471 Transporter associated domain RY45_RS13755 PF03741 RY45_RS13755 RY45_RS13760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_RS13765 PF00962 Adenosine/AMP deaminase RY45_RS13770 PF13242 HAD-hyrolase-like RY45_RS13770 PF13344 Haloacid dehalogenase-like hydrolase RY45_RS13775 PF00999 Sodium/hydrogen exchanger family RY45_RS13775 PF02254 TrkA-N domain RY45_RS13780 PF05899 Protein of unknown function (DUF861) RY45_RS13785 PF00733 Asparagine synthase RY45_RS13785 PF13537 Glutamine amidotransferase domain RY45_RS13790 PF13899 Thioredoxin-like RY45_RS13795 PF13417 Glutathione S-transferase, N-terminal domain RY45_RS13800 PF13417 Glutathione S-transferase, N-terminal domain RY45_RS13800 PF14497 Glutathione S-transferase, C-terminal domain RY45_RS13805 PF01557 Fumarylacetoacetate (FAA) hydrolase family RY45_RS13810 PF04209 homogentisate 1,2-dioxygenase RY45_RS13815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS13815 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal RY45_RS13820 PF12710 haloacid dehalogenase-like hydrolase RY45_RS13825 PF00849 RNA pseudouridylate synthase RY45_RS13830 PF00990 GGDEF domain RY45_RS13830 PF09084 NMT1/THI5 like RY45_RS13835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS13835 PF08447 PAS fold RY45_RS13840 PF06057 Bacterial virulence protein (VirJ) RY45_RS13845 PF03706 RY45_RS13845 RY45_RS13845 PF09924 Uncharacterized conserved protein (DUF2156) RY45_RS13850 PF00884 Sulfatase RY45_RS13850 PF08019 RY45_RS13850 RY45_RS13855 PF03988 RY45_RS13855 RY45_RS13860 PF07690 Major Facilitator Superfamily RY45_RS13865 PF02108 RY45_RS13865 RY45_RS13875 PF01514 Secretory protein of YscJ/FliF family RY45_RS13880 PF17001 RY45_RS13880 RY45_RS13885 PF09025 YopR Core RY45_RS13890 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) RY45_RS13895 PF09392 Type III secretion needle MxiH like RY45_RS13900 PF08988 Protein of unknown function (DUF1895) RY45_RS13905 PF16693 RY45_RS13905 RY45_RS13905 PF16697 RY45_RS13905 RY45_RS13910 PF00263 RY45_RS13910 RY45_RS13910 PF03958 Bacterial type II/III secretion system short domain RY45_RS13915 PF05932 Tir chaperone protein (CesT) family RY45_RS13920 PF16806 RY45_RS13920 RY45_RS13925 PF12833 Helix-turn-helix domain RY45_RS13930 PF09619 Type III secretion system lipoprotein chaperone (YscW) RY45_RS13940 PF05932 Tir chaperone protein (CesT) family RY45_RS13945 PF05844 YopD protein RY45_RS13950 PF04888 RY45_RS13950 RY45_RS13960 PF04792 V antigen (LcrV) protein RY45_RS13965 PF07216 RY45_RS13965 RY45_RS13975 PF00771 FHIPEP family RY45_RS13980 PF14559 Tetratricopeptide repeat RY45_RS13985 PF09474 RY45_RS13985 RY45_RS13995 PF09059 TyeA RY45_RS14000 PF07201 HrpJ-like domain RY45_RS14005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_RS14005 PF02874 ATP synthase alpha/beta family, beta-barrel domain RY45_RS14010 PF07321 Type III secretion protein YscO RY45_RS14020 PF01052 Surface presentation of antigens (SPOA) RY45_RS14025 PF00813 RY45_RS14025 RY45_RS14030 PF01313 RY45_RS14030 RY45_RS14035 PF01311 RY45_RS14035 RY45_RS14040 PF01312 FlhB HrpN YscU SpaS Family RY45_RS14055 PF01027 Inhibitor of apoptosis-promoting Bax1 RY45_RS14060 PF12805 RY45_RS14060 RY45_RS14060 PF13515 RY45_RS14060 RY45_RS14065 PF04358 DsrC like protein RY45_RS14070 PF05036 Sporulation related domain RY45_RS14075 PF02875 Mur ligase family, glutamate ligase domain RY45_RS14075 PF08245 Mur ligase middle domain RY45_RS14080 PF01039 Carboxyl transferase domain RY45_RS14085 PF01416 tRNA pseudouridine synthase RY45_RS14095 PF01118 Semialdehyde dehydrogenase, NAD binding domain RY45_RS14095 PF02774 Semialdehyde dehydrogenase, dimerisation domain RY45_RS14100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_RS14100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_RS14100 PF11890 Domain of unknown function (DUF3410) RY45_RS14105 PF01569 PAP2 superfamily RY45_RS14110 PF03180 NLPA lipoprotein RY45_RS14115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS14130 PF00857 Isochorismatase family RY45_RS14135 PF00082 Subtilase family RY45_RS14135 PF01483 Proprotein convertase P-domain RY45_RS14145 PF00933 Glycosyl hydrolase family 3 N terminal domain RY45_RS14145 PF01915 Glycosyl hydrolase family 3 C-terminal domain RY45_RS14145 PF14310 Fibronectin type III-like domain RY45_RS14150 PF12625 RY45_RS14150 RY45_RS14150 PF12833 Helix-turn-helix domain RY45_RS14155 PF00391 PEP-utilising enzyme, mobile domain RY45_RS14155 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RY45_RS14155 PF02896 PEP-utilising enzyme, TIM barrel domain RY45_RS14160 PF03618 RY45_RS14160 RY45_RS14170 PF00324 Amino acid permease RY45_RS14175 PF04402 Protein of unknown function (DUF541) RY45_RS14195 PF00563 EAL domain RY45_RS14195 PF00990 GGDEF domain RY45_RS14195 PF16448 RY45_RS14195 RY45_RS14200 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP RY45_RS14205 PF02321 Outer membrane efflux protein RY45_RS14210 PF13437 HlyD family secretion protein RY45_RS14210 PF13533 Biotin-lipoyl like RY45_RS14215 PF00005 ABC transporter RY45_RS14215 PF00664 ABC transporter transmembrane region RY45_RS14220 PF04055 Radical SAM superfamily RY45_RS14220 PF16199 RY45_RS14220 RY45_RS14230 PF00310 Glutamine amidotransferases class-II RY45_RS14230 PF01493 GXGXG motif RY45_RS14230 PF01645 Conserved region in glutamate synthase RY45_RS14230 PF04898 Glutamate synthase central domain RY45_RS14235 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS14235 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RY45_RS14240 PF00005 ABC transporter RY45_RS14245 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS14250 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS14255 PF12680 SnoaL-like domain RY45_RS14260 PF01596 O-methyltransferase RY45_RS14265 PF00376 MerR family regulatory protein RY45_RS14265 PF09278 MerR, DNA binding RY45_RS14270 PF14027 RY45_RS14270 RY45_RS14280 PF14521 Lysine-specific metallo-endopeptidase RY45_RS14285 PF11140 RY45_RS14285 RY45_RS14290 PF00270 DEAD/DEAH box helicase RY45_RS14290 PF00271 Helicase conserved C-terminal domain RY45_RS14295 PF13302 Acetyltransferase (GNAT) domain RY45_RS14300 PF09335 RY45_RS14300 RY45_RS14305 PF05228 RY45_RS14305 RY45_RS14310 PF03797 Autotransporter beta-domain RY45_RS14315 PF01396 RY45_RS14315 RY45_RS14315 PF08378 RY45_RS14315 RY45_RS14325 PF07759 RY45_RS14325 RY45_RS14330 PF00682 HMGL-like RY45_RS14330 PF08502 LeuA allosteric (dimerisation) domain RY45_RS14335 PF02142 MGS-like domain RY45_RS14335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RY45_RS14335 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RY45_RS14340 PF00117 Glutamine amidotransferase class-I RY45_RS14340 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RY45_RS14345 PF01113 Dihydrodipicolinate reductase, N-terminus RY45_RS14345 PF05173 Dihydrodipicolinate reductase, C-terminus RY45_RS14350 PF03553 RY45_RS14350 RY45_RS14355 PF01812 5-formyltetrahydrofolate cyclo-ligase family RY45_RS14360 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RY45_RS14370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_RS14370 PF01842 ACT domain RY45_RS14370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_RS14375 PF01219 Prokaryotic diacylglycerol kinase RY45_RS14380 PF00793 DAHP synthetase I family RY45_RS14385 PF00583 Acetyltransferase (GNAT) family RY45_RS14390 PF00005 ABC transporter RY45_RS14395 PF01032 FecCD transport family RY45_RS14400 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS14405 PF04342 RY45_RS14405 RY45_RS14410 PF00437 Type II/IV secretion system protein RY45_RS14415 PF00483 Nucleotidyl transferase RY45_RS14425 PF09012 FeoC like transcriptional regulator RY45_RS14430 PF02421 Ferrous iron transport protein B RY45_RS14430 PF07664 RY45_RS14430 RY45_RS14430 PF07670 Nucleoside recognition RY45_RS14435 PF04023 FeoA domain RY45_RS14440 PF01253 Translation initiation factor SUI1 RY45_RS14445 PF01169 RY45_RS14445 RY45_RS14450 PF09925 RY45_RS14450 RY45_RS14455 PF14351 RY45_RS14455 RY45_RS14460 PF14345 RY45_RS14460 RY45_RS14465 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS14470 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS14475 PF00990 GGDEF domain RY45_RS14475 PF13492 GAF domain RY45_RS14485 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) RY45_RS14495 PF01406 tRNA synthetases class I (C) catalytic domain RY45_RS14495 PF09190 DALR domain RY45_RS14500 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RY45_RS14505 PF14091 RY45_RS14505 RY45_RS14510 PF00149 Calcineurin-like phosphoesterase RY45_RS14515 PF03916 RY45_RS14515 RY45_RS14520 PF13247 4Fe-4S dicluster domain RY45_RS14525 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RY45_RS14525 PF13435 Cytochrome c554 and c-prime RY45_RS14530 PF00034 Cytochrome c RY45_RS14530 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RY45_RS14540 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RY45_RS14545 PF11854 RY45_RS14545 RY45_RS14550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS14550 PF07238 PilZ domain RY45_RS14555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS14555 PF08447 PAS fold RY45_RS14575 PF01066 CDP-alcohol phosphatidyltransferase RY45_RS14580 PF01541 GIY-YIG catalytic domain RY45_RS14580 PF02151 UvrB/uvrC motif RY45_RS14580 PF08459 UvrC Helix-hairpin-helix N-terminal RY45_RS14580 PF14520 Helix-hairpin-helix domain RY45_RS14585 PF00072 Response regulator receiver domain RY45_RS14585 PF00196 Bacterial regulatory proteins, luxR family RY45_RS14590 PF02348 Cytidylyltransferase RY45_RS14595 PF03966 Trm112p-like protein RY45_RS14600 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RY45_RS14605 PF00005 ABC transporter RY45_RS14605 PF00664 ABC transporter transmembrane region RY45_RS14610 PF00753 Metallo-beta-lactamase superfamily RY45_RS14610 PF03772 RY45_RS14610 RY45_RS14610 PF13567 RY45_RS14610 RY45_RS14615 PF09835 RY45_RS14615 RY45_RS14620 PF09835 RY45_RS14620 RY45_RS14625 PF05872 RY45_RS14625 RY45_RS14630 PF06291 RY45_RS14630 RY45_RS14635 PF06291 RY45_RS14635 RY45_RS14645 PF06406 StbA protein RY45_RS14650 PF12697 Alpha/beta hydrolase family RY45_RS14655 PF00005 ABC transporter RY45_RS14655 PF03459 TOBE domain RY45_RS14660 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS14665 PF13531 Bacterial extracellular solute-binding protein RY45_RS14670 PF02391 MoaE protein RY45_RS14675 PF02597 ThiS family RY45_RS14680 PF01967 MoaC family RY45_RS14685 PF00994 Probable molybdopterin binding domain RY45_RS14690 PF03264 NapC/NirT cytochrome c family, N-terminal region RY45_RS14695 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RY45_RS14700 PF12801 RY45_RS14700 RY45_RS14705 PF12800 4Fe-4S binding domain RY45_RS14705 PF12838 4Fe-4S dicluster domain RY45_RS14710 PF00384 Molybdopterin oxidoreductase RY45_RS14710 PF01568 Molydopterin dinucleotide binding domain RY45_RS14710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS14710 PF10518 TAT (twin-arginine translocation) pathway signal sequence RY45_RS14715 PF03927 NapD protein RY45_RS14720 PF12838 4Fe-4S dicluster domain RY45_RS14720 PF13237 4Fe-4S dicluster domain RY45_RS14725 PF04055 Radical SAM superfamily RY45_RS14725 PF06463 Molybdenum Cofactor Synthesis C RY45_RS14725 PF13353 4Fe-4S single cluster domain RY45_RS14730 PF00672 HAMP domain RY45_RS14730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS14730 PF07730 Histidine kinase RY45_RS14730 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RY45_RS14735 PF00072 Response regulator receiver domain RY45_RS14735 PF00196 Bacterial regulatory proteins, luxR family RY45_RS14740 PF02190 ATP-dependent protease La (LON) domain RY45_RS14745 PF00072 Response regulator receiver domain RY45_RS14745 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS14750 PF08495 RY45_RS14750 RY45_RS14750 PF10442 RY45_RS14750 RY45_RS14755 PF01933 Uncharacterised protein family UPF0052 RY45_RS14760 PF01627 Hpt domain RY45_RS14765 PF13230 Glutamine amidotransferases class-II RY45_RS14770 PF13580 SIS domain RY45_RS14775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RY45_RS14775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RY45_RS14775 PF09317 RY45_RS14775 RY45_RS14780 PF01966 HD domain RY45_RS14780 PF11849 RY45_RS14780 RY45_RS14785 PF00571 CBS domain RY45_RS14785 PF01769 Divalent cation transporter RY45_RS14785 PF03448 MgtE intracellular N domain RY45_RS14790 PF00669 Bacterial flagellin N-terminal helical region RY45_RS14795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS14800 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RY45_RS14800 PF10135 RY45_RS14800 RY45_RS14805 PF02119 RY45_RS14805 RY45_RS14810 PF02107 RY45_RS14810 RY45_RS14815 PF00460 Flagella basal body rod protein RY45_RS14815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS14820 PF00460 Flagella basal body rod protein RY45_RS14820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS14825 PF00460 Flagella basal body rod protein RY45_RS14825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS14825 PF07559 Flagellar basal body protein FlaE RY45_RS14830 PF03963 RY45_RS14830 RY45_RS14830 PF13860 FlgD Ig-like domain RY45_RS14830 PF13861 FlgD Tudor-like domain RY45_RS14835 PF00460 Flagella basal body rod protein RY45_RS14835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS14840 PF00460 Flagella basal body rod protein RY45_RS14845 PF01739 CheR methyltransferase, SAM binding domain RY45_RS14845 PF03705 CheR methyltransferase, all-alpha domain RY45_RS14850 PF00072 Response regulator receiver domain RY45_RS14850 PF01584 CheW-like domain RY45_RS14855 PF13144 SAF-like RY45_RS14860 PF04316 Anti-sigma-28 factor, FlgM RY45_RS14865 PF05130 FlgN protein RY45_RS14870 PF12850 Calcineurin-like phosphoesterase superfamily domain RY45_RS14875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS14880 PF00892 EamA-like transporter family RY45_RS14885 PF00849 RNA pseudouridylate synthase RY45_RS14885 PF01479 S4 domain RY45_RS14890 PF11871 RY45_RS14890 RY45_RS14890 PF13487 HD domain RY45_RS14900 PF00923 Transaldolase RY45_RS14905 PF04055 Radical SAM superfamily RY45_RS14905 PF13353 4Fe-4S single cluster domain RY45_RS14910 PF01228 Glycine radical RY45_RS14910 PF02901 Pyruvate formate lyase RY45_RS14915 PF00455 RY45_RS14915 RY45_RS14915 PF08220 DeoR-like helix-turn-helix domain RY45_RS14920 PF00892 EamA-like transporter family RY45_RS14925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS14930 PF11042 RY45_RS14930 RY45_RS14950 PF00313 'Cold-shock' DNA-binding domain RY45_RS14955 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RY45_RS14955 PF00364 Biotin-requiring enzyme RY45_RS14955 PF02817 e3 binding domain RY45_RS14960 PF02779 Transketolase, pyrimidine binding domain RY45_RS14960 PF02780 Transketolase, C-terminal domain RY45_RS14965 PF00676 Dehydrogenase E1 component RY45_RS14970 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RY45_RS14975 PF06568 RY45_RS14975 RY45_RS14980 PF05472 DNA replication terminus site-binding protein (Ter protein) RY45_RS14985 PF00176 SNF2 family N-terminal domain RY45_RS14985 PF00271 Helicase conserved C-terminal domain RY45_RS14990 PF04337 Protein of unknown function, DUF480 RY45_RS14995 PF04932 RY45_RS14995 RY45_RS14995 PF11846 RY45_RS14995 RY45_RS14995 PF15864 RY45_RS14995 RY45_RS15000 PF02706 Chain length determinant protein RY45_RS15000 PF13807 RY45_RS15000 RY45_RS15010 PF00483 Nucleotidyl transferase RY45_RS15015 PF04321 RmlD substrate binding domain RY45_RS15020 PF16363 RY45_RS15020 RY45_RS15025 PF02719 Polysaccharide biosynthesis protein RY45_RS15025 PF13727 CoA-binding domain RY45_RS15030 PF02397 RY45_RS15030 RY45_RS15035 PF01370 NAD dependent epimerase/dehydratase family RY45_RS15040 PF00534 Glycosyl transferases group 1 RY45_RS15040 PF13477 Glycosyl transferase 4-like RY45_RS15045 PF00733 Asparagine synthase RY45_RS15045 PF13537 Glutamine amidotransferase domain RY45_RS15050 PF01370 NAD dependent epimerase/dehydratase family RY45_RS15055 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RY45_RS15055 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RY45_RS15055 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RY45_RS15065 PF02321 Outer membrane efflux protein RY45_RS15070 PF00873 AcrB/AcrD/AcrF family RY45_RS15075 PF00529 HlyD family secretion protein RY45_RS15075 PF16576 RY45_RS15075 RY45_RS15080 PF00440 Bacterial regulatory proteins, tetR family RY45_RS15080 PF08361 MAATS-type transcriptional repressor, C-terminal region RY45_RS15085 PF08241 Methyltransferase domain RY45_RS15090 PF00375 Sodium:dicarboxylate symporter family RY45_RS15100 PF13622 Thioesterase-like superfamily RY45_RS15105 PF00849 RNA pseudouridylate synthase RY45_RS15105 PF01479 S4 domain RY45_RS15110 PF04079 Putative transcriptional regulators (Ypuh-like) RY45_RS15115 PF02616 ScpA/B protein RY45_RS15120 PF01300 Telomere recombination RY45_RS15125 PF02811 PHP domain RY45_RS15130 PF00425 chorismate binding enzyme RY45_RS15130 PF04715 Anthranilate synthase component I, N terminal region RY45_RS15135 PF00117 Glutamine amidotransferase class-I RY45_RS15140 PF00591 Glycosyl transferase family, a/b domain RY45_RS15140 PF02885 Glycosyl transferase family, helical bundle domain RY45_RS15145 PF00218 Indole-3-glycerol phosphate synthase RY45_RS15145 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RY45_RS15150 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS15155 PF00290 Tryptophan synthase alpha chain RY45_RS15165 PF04307 RY45_RS15165 RY45_RS15170 PF11730 RY45_RS15170 RY45_RS15175 PF00030 Beta/Gamma crystallin RY45_RS15180 PF08816 Inhibitor of vertebrate lysozyme (Ivy) RY45_RS15185 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_RS15185 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_RS15185 PF07670 Nucleoside recognition RY45_RS15190 PF13519 von Willebrand factor type A domain RY45_RS15195 PF02698 DUF218 domain RY45_RS15200 PF05656 RY45_RS15200 RY45_RS15205 PF00561 alpha/beta hydrolase fold RY45_RS15210 PF07690 Major Facilitator Superfamily RY45_RS15215 PF01040 UbiA prenyltransferase family RY45_RS15220 PF03626 RY45_RS15220 RY45_RS15225 PF00510 Cytochrome c oxidase subunit III RY45_RS15230 PF00115 Cytochrome C and Quinol oxidase polypeptide I RY45_RS15235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RY45_RS15235 PF06481 COX Aromatic Rich Motif RY45_RS15240 PF13450 NAD(P)-binding Rossmann-like domain RY45_RS15245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RY45_RS15250 PF12321 RY45_RS15250 RY45_RS15255 PF01156 Inosine-uridine preferring nucleoside hydrolase RY45_RS15260 PF05962 HutD RY45_RS15270 PF00127 Copper binding proteins, plastocyanin/azurin family RY45_RS15275 PF02424 ApbE family RY45_RS15280 PF07690 Major Facilitator Superfamily RY45_RS15285 PF00072 Response regulator receiver domain RY45_RS15285 PF13432 Tetratricopeptide repeat RY45_RS15285 PF14559 Tetratricopeptide repeat RY45_RS15290 PF00805 Pentapeptide repeats (8 copies) RY45_RS15290 PF07885 Ion channel RY45_RS15295 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_RS15300 PF16576 RY45_RS15300 RY45_RS15305 PF00873 AcrB/AcrD/AcrF family RY45_RS15315 PF11604 Copper binding periplasmic protein CusF RY45_RS15315 PF16576 RY45_RS15315 RY45_RS15320 PF00873 AcrB/AcrD/AcrF family RY45_RS15325 PF11604 Copper binding periplasmic protein CusF RY45_RS15335 PF00282 Pyridoxal-dependent decarboxylase conserved domain RY45_RS15340 PF03099 Biotin/lipoate A/B protein ligase family RY45_RS15340 PF10437 Bacterial lipoate protein ligase C-terminus RY45_RS15345 PF00990 GGDEF domain RY45_RS15345 PF01814 Hemerythrin HHE cation binding domain RY45_RS15345 PF08448 PAS fold RY45_RS15345 PF09084 NMT1/THI5 like RY45_RS15350 PF00873 AcrB/AcrD/AcrF family RY45_RS15355 PF16576 RY45_RS15355 RY45_RS15365 PF04143 RY45_RS15365 RY45_RS15370 PF01022 Bacterial regulatory protein, arsR family RY45_RS15375 PF11127 Protein of unknown function (DUF2892) RY45_RS15385 PF02308 RY45_RS15385 RY45_RS15390 PF00226 DnaJ domain RY45_RS15390 PF00684 DnaJ central domain RY45_RS15390 PF01556 DnaJ C terminal domain RY45_RS15395 PF00012 Hsp70 protein RY45_RS15400 PF01025 GrpE RY45_RS15405 PF01513 ATP-NAD kinase RY45_RS15410 PF02463 RecF/RecN/SMC N terminal domain RY45_RS15415 PF01368 DHH family RY45_RS15415 PF02833 DHHA2 domain RY45_RS15420 PF00582 Universal stress protein family RY45_RS15425 PF16576 RY45_RS15425 RY45_RS15430 PF00005 ABC transporter RY45_RS15430 PF02687 RY45_RS15430 RY45_RS15430 PF12704 MacB-like periplasmic core domain RY45_RS15435 PF02321 Outer membrane efflux protein RY45_RS15440 PF04954 Siderophore-interacting protein RY45_RS15440 PF08021 Siderophore-interacting FAD-binding domain RY45_RS15450 PF00793 DAHP synthetase I family RY45_RS15455 PF00816 H-NS histone family RY45_RS15460 PF13673 Acetyltransferase (GNAT) domain RY45_RS15465 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RY45_RS15470 PF05656 RY45_RS15470 RY45_RS15485 PF01266 FAD dependent oxidoreductase RY45_RS15490 PF07883 Cupin domain RY45_RS15490 PF13560 Helix-turn-helix domain RY45_RS15495 PF00171 Aldehyde dehydrogenase family RY45_RS15500 PF00202 Aminotransferase class-III RY45_RS15505 PF13520 Amino acid permease RY45_RS15515 PF13520 Amino acid permease RY45_RS15525 PF02690 RY45_RS15525 RY45_RS15530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RY45_RS15530 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RY45_RS15535 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RY45_RS15540 PF00072 Response regulator receiver domain RY45_RS15540 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS15540 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS15540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS15540 PF08448 PAS fold RY45_RS15545 PF00027 Cyclic nucleotide-binding domain RY45_RS15550 PF07690 Major Facilitator Superfamily RY45_RS15555 PF01048 Phosphorylase superfamily RY45_RS15570 PF11008 RY45_RS15570 RY45_RS15580 PF00005 ABC transporter RY45_RS15585 PF13644 RY45_RS15585 RY45_RS15590 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS15590 PF14821 Threonine synthase N terminus RY45_RS15595 PF00288 GHMP kinases N terminal domain RY45_RS15595 PF08544 GHMP kinases C terminal RY45_RS15600 PF00696 Amino acid kinase family RY45_RS15600 PF00742 Homoserine dehydrogenase RY45_RS15600 PF01842 ACT domain RY45_RS15600 PF03447 Homoserine dehydrogenase, NAD binding domain RY45_RS15600 PF13840 ACT domain RY45_RS15605 PF00588 SpoU rRNA Methylase family RY45_RS15610 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RY45_RS15615 PF03724 META domain RY45_RS15625 PF03737 Demethylmenaquinone methyltransferase RY45_RS15630 PF11697 RY45_RS15630 RY45_RS15635 PF00072 Response regulator receiver domain RY45_RS15635 PF00486 Transcriptional regulatory protein, C terminal RY45_RS15650 PF00005 ABC transporter RY45_RS15650 PF00664 ABC transporter transmembrane region RY45_RS15655 PF00005 ABC transporter RY45_RS15655 PF00664 ABC transporter transmembrane region RY45_RS15660 PF16358 RY45_RS15660 RY45_RS15665 PF04343 RY45_RS15665 RY45_RS15670 PF01370 NAD dependent epimerase/dehydratase family RY45_RS15675 PF01980 Uncharacterised protein family UPF0066 RY45_RS15680 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RY45_RS15680 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RY45_RS15685 PF05762 VWA domain containing CoxE-like protein RY45_RS15690 PF00004 ATPase family associated with various cellular activities (AAA) RY45_RS15695 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS15700 PF00381 PTS HPr component phosphorylation site RY45_RS15705 PF00391 PEP-utilising enzyme, mobile domain RY45_RS15705 PF02896 PEP-utilising enzyme, TIM barrel domain RY45_RS15705 PF05524 PEP-utilising enzyme, N-terminal RY45_RS15710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RY45_RS15715 PF00990 GGDEF domain RY45_RS15725 PF01292 Prokaryotic cytochrome b561 RY45_RS15730 PF04519 RY45_RS15730 RY45_RS15735 PF13476 AAA domain RY45_RS15735 PF13558 Putative exonuclease SbcCD, C subunit RY45_RS15745 PF00149 Calcineurin-like phosphoesterase RY45_RS15745 PF12320 Type 5 capsule protein repressor C-terminal domain RY45_RS15750 PF13508 Acetyltransferase (GNAT) domain RY45_RS15755 PF04381 Putative exonuclease, RdgC RY45_RS15760 PF01019 Gamma-glutamyltranspeptidase RY45_RS15765 PF00999 Sodium/hydrogen exchanger family RY45_RS15765 PF02254 TrkA-N domain RY45_RS15770 PF04389 Peptidase family M28 RY45_RS15780 PF00224 Pyruvate kinase, barrel domain RY45_RS15780 PF02887 Pyruvate kinase, alpha/beta domain RY45_RS15785 PF00924 Mechanosensitive ion channel RY45_RS15785 PF12794 RY45_RS15785 RY45_RS15785 PF12795 RY45_RS15785 RY45_RS15795 PF10282 Lactonase, 7-bladed beta-propeller RY45_RS15800 PF00860 Permease family RY45_RS15810 PF16998 RY45_RS15810 RY45_RS15815 PF00390 Malic enzyme, N-terminal domain RY45_RS15815 PF03949 Malic enzyme, NAD binding domain RY45_RS15820 PF00072 Response regulator receiver domain RY45_RS15820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS15825 PF01292 Prokaryotic cytochrome b561 RY45_RS15830 PF13247 4Fe-4S dicluster domain RY45_RS15835 PF00384 Molybdopterin oxidoreductase RY45_RS15835 PF01568 Molydopterin dinucleotide binding domain RY45_RS15835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS15845 PF02613 Nitrate reductase delta subunit RY45_RS15850 PF00037 4Fe-4S binding domain RY45_RS15850 PF12838 4Fe-4S dicluster domain RY45_RS15855 PF11748 RY45_RS15855 RY45_RS15860 PF11749 RY45_RS15860 RY45_RS15865 PF02634 FdhD/NarQ family RY45_RS15870 PF12727 PBP superfamily domain RY45_RS15870 PF12728 Helix-turn-helix domain RY45_RS15875 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS15875 PF00672 HAMP domain RY45_RS15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS15875 PF17202 RY45_RS15875 RY45_RS15880 PF00072 Response regulator receiver domain RY45_RS15880 PF00158 Sigma-54 interaction domain RY45_RS15880 PF02954 Bacterial regulatory protein, Fis family RY45_RS15885 PF12849 PBP superfamily domain RY45_RS15890 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS15895 PF00005 ABC transporter RY45_RS15900 PF12804 MobA-like NTP transferase domain RY45_RS15905 PF00994 Probable molybdopterin binding domain RY45_RS15905 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RY45_RS15905 PF03453 MoeA N-terminal region (domain I and II) RY45_RS15905 PF03454 MoeA C-terminal region (domain IV) RY45_RS15910 PF04632 RY45_RS15910 RY45_RS15915 PF13487 HD domain RY45_RS15920 PF11810 RY45_RS15920 RY45_RS15925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS15925 PF08447 PAS fold RY45_RS15925 PF13426 PAS domain RY45_RS15930 PF00583 Acetyltransferase (GNAT) family RY45_RS15935 PF07681 RY45_RS15935 RY45_RS15940 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) RY45_RS15945 PF05114 Protein of unknown function (DUF692) RY45_RS15950 PF10048 RY45_RS15950 RY45_RS15955 PF10725 RY45_RS15955 RY45_RS15975 PF00072 Response regulator receiver domain RY45_RS15975 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS15975 PF00672 HAMP domain RY45_RS15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS15980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS15985 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS15990 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS15990 PF12911 RY45_RS15990 RY45_RS15995 PF00005 ABC transporter RY45_RS15995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS16000 PF00005 ABC transporter RY45_RS16000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS16005 PF00759 Glycosyl hydrolase family 9 RY45_RS16005 PF02927 N-terminal ig-like domain of cellulase RY45_RS16010 PF01869 BadF/BadG/BcrA/BcrD ATPase family RY45_RS16015 PF00728 Glycosyl hydrolase family 20, catalytic domain RY45_RS16015 PF02838 Glycosyl hydrolase family 20, domain 2 RY45_RS16020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS16020 PF08447 PAS fold RY45_RS16025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RY45_RS16030 PF01131 DNA topoisomerase RY45_RS16030 PF01396 RY45_RS16030 RY45_RS16030 PF01751 Toprim domain RY45_RS16030 PF08272 Topoisomerase I zinc-ribbon-like RY45_RS16035 PF04996 Succinylarginine dihydrolase RY45_RS16040 PF01343 Peptidase family S49 RY45_RS16040 PF08496 RY45_RS16040 RY45_RS16045 PF00106 short chain dehydrogenase RY45_RS16050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS16050 PF03466 LysR substrate binding domain RY45_RS16055 PF07690 Major Facilitator Superfamily RY45_RS16060 PF00155 Aminotransferase class I and II RY45_RS16065 PF16868 RY45_RS16065 RY45_RS16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS16070 PF03466 LysR substrate binding domain RY45_RS16075 PF00709 Adenylosuccinate synthetase RY45_RS16080 PF01161 Phosphatidylethanolamine-binding protein RY45_RS16085 PF12833 Helix-turn-helix domain RY45_RS16090 PF01204 Trehalase RY45_RS16095 PF00579 tRNA synthetases class I (W and Y) RY45_RS16095 PF01479 S4 domain RY45_RS16100 PF01551 Peptidase family M23 RY45_RS16100 PF04225 Opacity-associated protein A LysM-like domain RY45_RS16100 PF08525 RY45_RS16100 RY45_RS16105 PF03702 Uncharacterised protein family (UPF0075) RY45_RS16110 PF01965 DJ-1/PfpI family RY45_RS16115 PF01042 Endoribonuclease L-PSP RY45_RS16125 PF00456 Transketolase, thiamine diphosphate binding domain RY45_RS16125 PF02779 Transketolase, pyrimidine binding domain RY45_RS16125 PF02780 Transketolase, C-terminal domain RY45_RS16130 PF00438 S-adenosylmethionine synthetase, N-terminal domain RY45_RS16130 PF02772 S-adenosylmethionine synthetase, central domain RY45_RS16130 PF02773 S-adenosylmethionine synthetase, C-terminal domain RY45_RS16135 PF10263 RY45_RS16135 RY45_RS16140 PF04231 Endonuclease I RY45_RS16145 PF04452 RNA methyltransferase RY45_RS16150 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RY45_RS16150 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RY45_RS16155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS16155 PF12729 RY45_RS16155 RY45_RS16160 PF02622 Uncharacterized ACR, COG1678 RY45_RS16165 PF03652 Uncharacterised protein family (UPF0081) RY45_RS16170 PF00854 POT family RY45_RS16175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS16175 PF03466 LysR substrate binding domain RY45_RS16185 PF06291 RY45_RS16185 RY45_RS16190 PF00144 Beta-lactamase RY45_RS16195 PF07726 ATPase family associated with various cellular activities (AAA) RY45_RS16200 PF01882 RY45_RS16200 RY45_RS16205 PF01841 Transglutaminase-like superfamily RY45_RS16205 PF11992 RY45_RS16205 RY45_RS16210 PF01235 RY45_RS16210 RY45_RS16215 PF00923 Transaldolase RY45_RS16220 PF12065 RY45_RS16220 RY45_RS16225 PF01814 Hemerythrin HHE cation binding domain RY45_RS16230 PF03167 Uracil DNA glycosylase superfamily RY45_RS16235 PF01228 Glycine radical RY45_RS16240 PF00375 Sodium:dicarboxylate symporter family RY45_RS16245 PF00793 DAHP synthetase I family RY45_RS16250 PF13369 RY45_RS16250 RY45_RS16250 PF13371 Tetratricopeptide repeat RY45_RS16255 PF04247 RY45_RS16255 RY45_RS16260 PF05175 Methyltransferase small domain RY45_RS16265 PF00472 RF-1 domain RY45_RS16265 PF03462 PCRF domain RY45_RS16270 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RY45_RS16270 PF01488 Shikimate / quinate 5-dehydrogenase RY45_RS16270 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RY45_RS16275 PF03550 Outer membrane lipoprotein LolB RY45_RS16290 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RY45_RS16290 PF14572 Phosphoribosyl synthetase-associated domain RY45_RS16295 PF00149 Calcineurin-like phosphoesterase RY45_RS16295 PF02872 5'-nucleotidase, C-terminal domain RY45_RS16300 PF01195 Peptidyl-tRNA hydrolase RY45_RS16305 PF01926 50S ribosome-binding GTPase RY45_RS16305 PF06071 Protein of unknown function (DUF933) RY45_RS16350 PF02080 TrkA-C domain RY45_RS16350 PF03600 Citrate transporter RY45_RS16355 PF04973 RY45_RS16355 RY45_RS16360 PF01048 Phosphorylase superfamily RY45_RS16365 PF00027 Cyclic nucleotide-binding domain RY45_RS16370 PF04266 ASCH domain RY45_RS16375 PF07784 RY45_RS16375 RY45_RS16380 PF00128 Alpha amylase, catalytic domain RY45_RS16380 PF11941 Domain of unknown function (DUF3459) RY45_RS16390 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RY45_RS16390 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RY45_RS16390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_RS16390 PF10371 Domain of unknown function RY45_RS16390 PF12838 4Fe-4S dicluster domain RY45_RS16390 PF17147 RY45_RS16390 RY45_RS16395 PF07690 Major Facilitator Superfamily RY45_RS16400 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS16405 PF12762 RY45_RS16405 RY45_RS16410 PF07063 Domain of unknown function (DUF1338) RY45_RS16415 PF00171 Aldehyde dehydrogenase family RY45_RS16420 PF04958 Arginine N-succinyltransferase beta subunit RY45_RS16425 PF00202 Aminotransferase class-III RY45_RS16430 PF00117 Glutamine amidotransferase class-I RY45_RS16440 PF00579 tRNA synthetases class I (W and Y) RY45_RS16445 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS16450 PF00834 Ribulose-phosphate 3 epimerase family RY45_RS16455 PF02086 D12 class N6 adenine-specific DNA methyltransferase RY45_RS16460 PF05036 Sporulation related domain RY45_RS16465 PF01761 3-dehydroquinate synthase RY45_RS16470 PF01202 Shikimate kinase RY45_RS16475 PF00263 RY45_RS16475 RY45_RS16475 PF03958 Bacterial type II/III secretion system short domain RY45_RS16480 PF04351 Pilus assembly protein, PilP RY45_RS16485 PF04350 Pilus assembly protein, PilO RY45_RS16490 PF05137 RY45_RS16490 RY45_RS16495 PF11104 Type IV pilus assembly protein PilM; RY45_RS16500 PF00905 Penicillin binding protein transpeptidase domain RY45_RS16500 PF00912 Transglycosylase RY45_RS16500 PF17092 RY45_RS16500 RY45_RS16505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS16505 PF03466 LysR substrate binding domain RY45_RS16510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS16510 PF00672 HAMP domain RY45_RS16510 PF12729 RY45_RS16510 RY45_RS16525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS16525 PF03466 LysR substrate binding domain RY45_RS16540 PF01551 Peptidase family M23 RY45_RS16545 PF01554 MatE RY45_RS16550 PF00924 Mechanosensitive ion channel RY45_RS16550 PF12794 RY45_RS16550 RY45_RS16550 PF12795 RY45_RS16550 RY45_RS16555 PF03009 Glycerophosphoryl diester phosphodiesterase family RY45_RS16560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS16560 PF00672 HAMP domain RY45_RS16560 PF02743 Cache domain RY45_RS16565 PF00890 FAD binding domain RY45_RS16565 PF02910 Fumarate reductase flavoprotein C-term RY45_RS16570 PF13085 2Fe-2S iron-sulfur cluster binding domain RY45_RS16570 PF13183 4Fe-4S dicluster domain RY45_RS16575 PF02300 Fumarate reductase subunit C RY45_RS16580 PF02313 Fumarate reductase subunit D RY45_RS16590 PF00440 Bacterial regulatory proteins, tetR family RY45_RS16600 PF06224 RY45_RS16600 RY45_RS16605 PF13489 Methyltransferase domain RY45_RS16610 PF12261 RY45_RS16610 RY45_RS16615 PF00501 AMP-binding enzyme RY45_RS16620 PF14518 Iron-containing redox enzyme RY45_RS16625 PF00106 short chain dehydrogenase RY45_RS16630 PF13181 Tetratricopeptide repeat RY45_RS16635 PF00072 Response regulator receiver domain RY45_RS16635 PF00486 Transcriptional regulatory protein, C terminal RY45_RS16640 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS16640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS16640 PF08521 RY45_RS16640 RY45_RS16645 PF05618 Putative ATP-dependant zinc protease RY45_RS16650 PF00478 IMP dehydrogenase / GMP reductase domain RY45_RS16655 PF10093 RY45_RS16655 RY45_RS16660 PF01132 Elongation factor P (EF-P) OB domain RY45_RS16660 PF08207 Elongation factor P (EF-P) KOW-like domain RY45_RS16660 PF09285 Elongation factor P, C-terminal RY45_RS16665 PF09997 RY45_RS16665 RY45_RS16670 PF12048 RY45_RS16670 RY45_RS16675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_RS16675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_RS16680 PF13488 RY45_RS16680 RY45_RS16685 PF00990 GGDEF domain RY45_RS16690 PF00881 Nitroreductase family RY45_RS16695 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS16705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS16705 PF03466 LysR substrate binding domain RY45_RS16710 PF00990 GGDEF domain RY45_RS16710 PF08448 PAS fold RY45_RS16715 PF00313 'Cold-shock' DNA-binding domain RY45_RS16715 PF05901 RY45_RS16715 RY45_RS16720 PF00857 Isochorismatase family RY45_RS16725 PF01494 FAD binding domain RY45_RS16730 PF00919 Uncharacterized protein family UPF0004 RY45_RS16730 PF01938 TRAM domain RY45_RS16730 PF04055 Radical SAM superfamily RY45_RS16735 PF02562 PhoH-like protein RY45_RS16740 PF02130 Uncharacterized protein family UPF0054 RY45_RS16745 PF00571 CBS domain RY45_RS16745 PF03471 Transporter associated domain RY45_RS16750 PF00795 Carbon-nitrogen hydrolase RY45_RS16755 PF07295 RY45_RS16755 RY45_RS16760 PF00133 tRNA synthetases class I (I, L, M and V) RY45_RS16760 PF08264 Anticodon-binding domain of tRNA RY45_RS16760 PF13603 Leucyl-tRNA synthetase, Domain 2 RY45_RS16765 PF04390 Lipopolysaccharide-assembly RY45_RS16775 PF06144 DNA polymerase III, delta subunit RY45_RS16775 PF14840 Processivity clamp loader gamma complex DNA pol III C-term RY45_RS16780 PF01467 Cytidylyltransferase RY45_RS16785 PF02410 Oligomerisation domain RY45_RS16790 PF02590 Predicted SPOUT methyltransferase RY45_RS16795 PF00905 Penicillin binding protein transpeptidase domain RY45_RS16795 PF03717 Penicillin-binding Protein dimerisation domain RY45_RS16800 PF01098 RY45_RS16800 RY45_RS16805 PF13406 Transglycosylase SLT domain RY45_RS16810 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel RY45_RS16810 PF05036 Sporulation related domain RY45_RS16815 PF00768 D-alanyl-D-alanine carboxypeptidase RY45_RS16815 PF07943 Penicillin-binding protein 5, C-terminal domain RY45_RS16820 PF04359 Protein of unknown function (DUF493) RY45_RS16825 PF03099 Biotin/lipoate A/B protein ligase family RY45_RS16830 PF04055 Radical SAM superfamily RY45_RS16830 PF16881 RY45_RS16830 RY45_RS16845 PF05621 RY45_RS16845 RY45_RS16850 PF00665 Integrase core domain RY45_RS16850 PF09299 Mu transposase, C-terminal RY45_RS16855 PF08721 TnsA endonuclease C terminal RY45_RS16855 PF08722 TnsA endonuclease N terminal RY45_RS16860 PF00583 Acetyltransferase (GNAT) family RY45_RS16865 PF06821 Serine hydrolase RY45_RS16870 PF02508 RY45_RS16870 RY45_RS16880 PF13508 Acetyltransferase (GNAT) domain RY45_RS16885 PF13411 MerR HTH family regulatory protein RY45_RS16885 PF13649 Methyltransferase domain RY45_RS16890 PF01368 DHH family RY45_RS16890 PF02272 DHHA1 domain RY45_RS16895 PF10411 Disulfide bond isomerase protein N-terminus RY45_RS16895 PF13098 Thioredoxin-like domain RY45_RS16900 PF01741 Large-conductance mechanosensitive channel, MscL RY45_RS16905 PF00589 Phage integrase family RY45_RS16905 PF02899 Phage integrase, N-terminal SAM-like domain RY45_RS16910 PF00258 Flavodoxin RY45_RS16915 PF01523 Putative modulator of DNA gyrase RY45_RS16920 PF01523 Putative modulator of DNA gyrase RY45_RS16930 PF01476 LysM domain RY45_RS16930 PF03734 L,D-transpeptidase catalytic domain RY45_RS16935 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RY45_RS16940 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RY45_RS16945 PF05141 Pyoverdine/dityrosine biosynthesis protein RY45_RS16950 PF01734 Patatin-like phospholipase RY45_RS16955 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_RS16960 PF00384 Molybdopterin oxidoreductase RY45_RS16960 PF01568 Molydopterin dinucleotide binding domain RY45_RS16965 PF03916 RY45_RS16965 RY45_RS16970 PF13247 4Fe-4S dicluster domain RY45_RS16975 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS16975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS16975 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein RY45_RS16980 PF00072 Response regulator receiver domain RY45_RS16980 PF00196 Bacterial regulatory proteins, luxR family RY45_RS16985 PF06580 RY45_RS16985 RY45_RS16985 PF07694 5TMR of 5TMR-LYT RY45_RS16990 PF00072 Response regulator receiver domain RY45_RS16990 PF04397 LytTr DNA-binding domain RY45_RS16995 PF02554 RY45_RS16995 RY45_RS16995 PF13722 RY45_RS16995 RY45_RS17000 PF03575 Peptidase family S51 RY45_RS17005 PF00206 Lyase RY45_RS17005 PF10415 Fumarase C C-terminus RY45_RS17010 PF06476 RY45_RS17010 RY45_RS17015 PF02635 DsrE/DsrF-like family RY45_RS17020 PF00990 GGDEF domain RY45_RS17020 PF11563 Protoglobin RY45_RS17025 PF07690 Major Facilitator Superfamily RY45_RS17030 PF00013 KH domain RY45_RS17030 PF00575 S1 RNA binding domain RY45_RS17030 PF01138 3' exoribonuclease family, domain 1 RY45_RS17030 PF03725 3' exoribonuclease family, domain 2 RY45_RS17030 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RY45_RS17035 PF00312 Ribosomal protein S15 RY45_RS17040 PF01509 TruB family pseudouridylate synthase (N terminal domain) RY45_RS17040 PF09157 Pseudouridine synthase II TruB, C-terminal RY45_RS17040 PF16198 RY45_RS17040 RY45_RS17045 PF02033 Ribosome-binding factor A RY45_RS17050 PF00009 Elongation factor Tu GTP binding domain RY45_RS17050 PF04760 Translation initiation factor IF-2, N-terminal region RY45_RS17050 PF08364 RY45_RS17050 RY45_RS17050 PF11987 Translation-initiation factor 2 RY45_RS17055 PF08529 NusA N-terminal domain RY45_RS17055 PF13184 NusA-like KH domain RY45_RS17055 PF14520 Helix-hairpin-helix domain RY45_RS17060 PF02576 Uncharacterised BCR, YhbC family COG0779 RY45_RS17075 PF03840 Preprotein translocase SecG subunit RY45_RS17080 PF00121 Triosephosphate isomerase RY45_RS17085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RY45_RS17085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RY45_RS17085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RY45_RS17085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RY45_RS17090 PF00809 Pterin binding enzyme RY45_RS17095 PF00004 ATPase family associated with various cellular activities (AAA) RY45_RS17095 PF01434 Peptidase family M41 RY45_RS17095 PF06480 FtsH Extracellular RY45_RS17100 PF01728 FtsJ-like methyltransferase RY45_RS17105 PF01985 CRS1 / YhbY (CRM) domain RY45_RS17115 PF01272 Transcription elongation factor, GreA/GreB, C-term RY45_RS17115 PF03449 Transcription elongation factor, N-terminal RY45_RS17120 PF00691 OmpA family RY45_RS17120 PF13677 RY45_RS17120 RY45_RS17125 PF01618 RY45_RS17125 RY45_RS17130 PF02609 Exonuclease VII small subunit RY45_RS17135 PF00348 Polyprenyl synthetase RY45_RS17140 PF02779 Transketolase, pyrimidine binding domain RY45_RS17140 PF02780 Transketolase, C-terminal domain RY45_RS17140 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RY45_RS17145 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS17145 PF12911 RY45_RS17145 RY45_RS17150 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS17155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS17160 PF00005 ABC transporter RY45_RS17160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS17165 PF04608 Phosphatidylglycerophosphatase A RY45_RS17170 PF00586 AIR synthase related protein, N-terminal domain RY45_RS17170 PF02769 AIR synthase related protein, C-terminal domain RY45_RS17175 PF01029 NusB family RY45_RS17180 PF00885 6,7-dimethyl-8-ribityllumazine synthase RY45_RS17185 PF00089 Trypsin RY45_RS17190 PF00925 GTP cyclohydrolase II RY45_RS17190 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RY45_RS17195 PF00677 Lumazine binding domain RY45_RS17200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RY45_RS17200 PF01872 RibD C-terminal domain RY45_RS17205 PF03477 ATP cone domain RY45_RS17215 PF00464 Serine hydroxymethyltransferase RY45_RS17225 PF04828 Glutathione-dependent formaldehyde-activating enzyme RY45_RS17230 PF02613 Nitrate reductase delta subunit RY45_RS17250 PF00563 EAL domain RY45_RS17250 PF00990 GGDEF domain RY45_RS17250 PF08448 PAS fold RY45_RS17250 PF13426 PAS domain RY45_RS17260 PF00501 AMP-binding enzyme RY45_RS17260 PF13193 AMP-binding enzyme C-terminal domain RY45_RS17260 PF16177 RY45_RS17260 RY45_RS17265 PF01220 Dehydroquinase class II RY45_RS17270 PF00364 Biotin-requiring enzyme RY45_RS17275 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RY45_RS17275 PF02785 Biotin carboxylase C-terminal domain RY45_RS17275 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RY45_RS17280 PF06196 RY45_RS17280 RY45_RS17285 PF00474 Sodium:solute symporter family RY45_RS17290 PF00367 phosphotransferase system, EIIB RY45_RS17290 PF02378 Phosphotransferase system, EIIC RY45_RS17295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS17295 PF03466 LysR substrate binding domain RY45_RS17300 PF08240 Alcohol dehydrogenase GroES-like domain RY45_RS17300 PF13602 Zinc-binding dehydrogenase RY45_RS17305 PF06325 Ribosomal protein L11 methyltransferase (PrmA) RY45_RS17310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_RS17310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_RS17315 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS17315 PF12464 Maltose acetyltransferase RY45_RS17320 PF00881 Nitroreductase family RY45_RS17325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RY45_RS17325 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS17330 PF01343 Peptidase family S49 RY45_RS17335 PF00293 NUDIX domain RY45_RS17340 PF11207 RY45_RS17340 RY45_RS17345 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_RS17345 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RY45_RS17350 PF07023 RY45_RS17350 RY45_RS17355 PF00710 Asparaginase RY45_RS17360 PF03616 RY45_RS17360 RY45_RS17365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS17365 PF00672 HAMP domain RY45_RS17365 PF02743 Cache domain RY45_RS17370 PF00472 RF-1 domain RY45_RS17370 PF03462 PCRF domain RY45_RS17375 PF00152 tRNA synthetases class II (D, K and N) RY45_RS17375 PF01336 OB-fold nucleic acid binding domain RY45_RS17380 PF02567 Phenazine biosynthesis-like protein RY45_RS17385 PF00175 Oxidoreductase NAD-binding domain RY45_RS17385 PF00258 Flavodoxin RY45_RS17385 PF00667 FAD binding domain RY45_RS17390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_RS17390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_RS17395 PF01507 Phosphoadenosine phosphosulfate reductase family RY45_RS17400 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RY45_RS17405 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS17410 PF00005 ABC transporter RY45_RS17410 PF00571 CBS domain RY45_RS17415 PF00186 Dihydrofolate reductase RY45_RS17420 PF12821 RY45_RS17420 RY45_RS17425 PF06738 RY45_RS17425 RY45_RS17430 PF11333 RY45_RS17430 RY45_RS17435 PF00994 Probable molybdopterin binding domain RY45_RS17440 PF10807 RY45_RS17440 RY45_RS17445 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_RS17445 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_RS17450 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS17460 PF00109 Beta-ketoacyl synthase, N-terminal domain RY45_RS17460 PF02801 Beta-ketoacyl synthase, C-terminal domain RY45_RS17465 PF11659 RY45_RS17465 RY45_RS17475 PF03548 Outer membrane lipoprotein carrier protein LolA RY45_RS17480 PF03061 Thioesterase superfamily RY45_RS17485 PF00221 Aromatic amino acid lyase RY45_RS17490 PF00535 Glycosyl transferase family 2 RY45_RS17490 PF03279 RY45_RS17490 RY45_RS17495 PF07977 FabA-like domain RY45_RS17500 PF00501 AMP-binding enzyme RY45_RS17510 PF00550 Phosphopantetheine attachment site RY45_RS17515 PF00550 Phosphopantetheine attachment site RY45_RS17520 PF01553 Acyltransferase RY45_RS17525 PF13723 RY45_RS17525 RY45_RS17535 PF00891 O-methyltransferase RY45_RS17545 PF01223 DNA/RNA non-specific endonuclease RY45_RS17550 PF00034 Cytochrome c RY45_RS17550 PF03150 Di-haem cytochrome c peroxidase RY45_RS17555 PF00194 Eukaryotic-type carbonic anhydrase RY45_RS17560 PF04227 Indigoidine synthase A like protein RY45_RS17565 PF00294 pfkB family carbohydrate kinase RY45_RS17565 PF13412 Winged helix-turn-helix DNA-binding RY45_RS17570 PF13806 Rieske-like [2Fe-2S] domain RY45_RS17575 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_RS17575 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_RS17575 PF04324 BFD-like [2Fe-2S] binding domain RY45_RS17575 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS17580 PF00005 ABC transporter RY45_RS17585 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS17590 PF13379 NMT1-like family RY45_RS17595 PF03861 ANTAR domain RY45_RS17600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_RS17605 PF00384 Molybdopterin oxidoreductase RY45_RS17605 PF01568 Molydopterin dinucleotide binding domain RY45_RS17605 PF04324 BFD-like [2Fe-2S] binding domain RY45_RS17605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS17610 PF00588 SpoU rRNA Methylase family RY45_RS17620 PF00582 Universal stress protein family RY45_RS17625 PF13645 RY45_RS17625 RY45_RS17630 PF00171 Aldehyde dehydrogenase family RY45_RS17635 PF00696 Amino acid kinase family RY45_RS17635 PF01472 PUA domain RY45_RS17640 PF07417 Transcriptional regulator Crl RY45_RS17645 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) RY45_RS17650 PF00156 Phosphoribosyl transferase domain RY45_RS17655 PF01546 Peptidase family M20/M25/M40 RY45_RS17655 PF07687 Peptidase dimerisation domain RY45_RS17660 PF00005 ABC transporter RY45_RS17660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS17665 PF00005 ABC transporter RY45_RS17665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RY45_RS17670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS17675 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS17680 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS17685 PF00593 TonB dependent receptor RY45_RS17685 PF07715 TonB-dependent Receptor Plug Domain RY45_RS17690 PF11932 RY45_RS17690 RY45_RS17695 PF01618 RY45_RS17695 RY45_RS17700 PF01618 RY45_RS17700 RY45_RS17705 PF02472 Biopolymer transport protein ExbD/TolR RY45_RS17710 PF03544 Gram-negative bacterial TonB protein C-terminal RY45_RS17715 PF13181 Tetratricopeptide repeat RY45_RS17715 PF13432 Tetratricopeptide repeat RY45_RS17720 PF00704 Glycosyl hydrolases family 18 RY45_RS17720 PF02839 Carbohydrate binding domain RY45_RS17720 PF06483 RY45_RS17720 RY45_RS17725 PF03372 Endonuclease/Exonuclease/phosphatase family RY45_RS17730 PF12762 RY45_RS17730 RY45_RS17765 PF00749 tRNA synthetases class I (E and Q), catalytic domain RY45_RS17770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS17770 PF00672 HAMP domain RY45_RS17775 PF04225 Opacity-associated protein A LysM-like domain RY45_RS17780 PF00313 'Cold-shock' DNA-binding domain RY45_RS17810 PF00929 Exonuclease RY45_RS17815 PF03193 Protein of unknown function, DUF258 RY45_RS17820 PF02666 RY45_RS17820 RY45_RS17825 PF09905 Uncharacterized conserved protein (DUF2132) RY45_RS17830 PF11173 RY45_RS17830 RY45_RS17840 PF04224 RY45_RS17840 RY45_RS17845 PF02627 Carboxymuconolactone decarboxylase family RY45_RS17850 PF12833 Helix-turn-helix domain RY45_RS17850 PF12852 Cupin RY45_RS17860 PF00563 EAL domain RY45_RS17860 PF00990 GGDEF domain RY45_RS17860 PF08448 PAS fold RY45_RS17860 PF13188 PAS domain RY45_RS17865 PF06877 Regulator of ribonuclease activity B RY45_RS17870 PF05547 RY45_RS17870 RY45_RS17885 PF00561 alpha/beta hydrolase fold RY45_RS17890 PF00005 ABC transporter RY45_RS17890 PF00664 ABC transporter transmembrane region RY45_RS17895 PF06004 Bacterial protein of unknown function (DUF903) RY45_RS17900 PF00082 Subtilase family RY45_RS17905 PF00581 Rhodanese-like domain RY45_RS17910 PF04960 Glutaminase RY45_RS17915 PF04320 RY45_RS17915 RY45_RS17920 PF02390 Putative methyltransferase RY45_RS17925 PF04389 Peptidase family M28 RY45_RS17930 PF00155 Aminotransferase class I and II RY45_RS17935 PF00563 EAL domain RY45_RS17935 PF12792 RY45_RS17935 RY45_RS17940 PF01370 NAD dependent epimerase/dehydratase family RY45_RS17940 PF08338 Domain of unknown function (DUF1731) RY45_RS17945 PF02687 RY45_RS17945 RY45_RS17950 PF00005 ABC transporter RY45_RS17955 PF13472 GDSL-like Lipase/Acylhydrolase family RY45_RS17960 PF00072 Response regulator receiver domain RY45_RS17960 PF01584 CheW-like domain RY45_RS17970 PF02080 TrkA-C domain RY45_RS17970 PF06826 RY45_RS17970 RY45_RS17975 PF03006 RY45_RS17975 RY45_RS17980 PF00282 Pyridoxal-dependent decarboxylase conserved domain RY45_RS17985 PF04279 RY45_RS17985 RY45_RS17990 PF03795 YCII-related domain RY45_RS17995 PF00459 Inositol monophosphatase family RY45_RS18000 PF12836 Helix-hairpin-helix motif RY45_RS18005 PF00483 Nucleotidyl transferase RY45_RS18010 PF00854 POT family RY45_RS18015 PF00072 Response regulator receiver domain RY45_RS18025 PF01695 IstB-like ATP binding protein RY45_RS18030 PF13460 NADH(P)-binding RY45_RS18035 PF12698 ABC-2 family transporter protein RY45_RS18040 PF12698 ABC-2 family transporter protein RY45_RS18045 PF16576 RY45_RS18045 RY45_RS18050 PF02321 Outer membrane efflux protein RY45_RS18055 PF01207 Dihydrouridine synthase (Dus) RY45_RS18060 PF02954 Bacterial regulatory protein, Fis family RY45_RS18065 PF01810 RY45_RS18065 RY45_RS18090 PF01521 Iron-sulphur cluster biosynthesis RY45_RS18100 PF00654 Voltage gated chloride channel RY45_RS18105 PF00202 Aminotransferase class-III RY45_RS18115 PF01925 RY45_RS18115 RY45_RS18120 PF01569 PAP2 superfamily RY45_RS18125 PF11157 RY45_RS18125 RY45_RS18130 PF00072 Response regulator receiver domain RY45_RS18130 PF01966 HD domain RY45_RS18130 PF11849 RY45_RS18130 RY45_RS18135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS18135 PF03466 LysR substrate binding domain RY45_RS18140 PF00893 Small Multidrug Resistance protein RY45_RS18145 PF00893 Small Multidrug Resistance protein RY45_RS18150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS18155 PF00905 Penicillin binding protein transpeptidase domain RY45_RS18155 PF00912 Transglycosylase RY45_RS18155 PF14814 Bifunctional transglycosylase second domain RY45_RS18160 PF00270 DEAD/DEAH box helicase RY45_RS18160 PF00271 Helicase conserved C-terminal domain RY45_RS18160 PF04408 Helicase associated domain (HA2) RY45_RS18160 PF08482 RY45_RS18160 RY45_RS18165 PF13563 2'-5' RNA ligase superfamily RY45_RS18170 PF03749 Sugar fermentation stimulation protein RY45_RS18175 PF01258 Prokaryotic dksA/traR C4-type zinc finger RY45_RS18180 PF00749 tRNA synthetases class I (E and Q), catalytic domain RY45_RS18185 PF01743 Poly A polymerase head domain RY45_RS18185 PF12626 Polymerase A arginine-rich C-terminus RY45_RS18185 PF12627 Probable RNA and SrmB- binding site of polymerase A RY45_RS18190 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RY45_RS18195 PF02548 Ketopantoate hydroxymethyltransferase RY45_RS18200 PF02569 Pantoate-beta-alanine ligase RY45_RS18205 PF00581 Rhodanese-like domain RY45_RS18215 PF05932 Tir chaperone protein (CesT) family RY45_RS18225 PF11823 RY45_RS18225 RY45_RS18230 PF01869 BadF/BadG/BcrA/BcrD ATPase family RY45_RS18235 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RY45_RS18240 PF01061 RY45_RS18240 RY45_RS18245 PF00005 ABC transporter RY45_RS18250 PF00156 Phosphoribosyl transferase domain RY45_RS18255 PF00440 Bacterial regulatory proteins, tetR family RY45_RS18260 PF02441 Flavoprotein RY45_RS18265 PF01225 Mur ligase family, catalytic domain RY45_RS18265 PF02875 Mur ligase family, glutamate ligase domain RY45_RS18265 PF08245 Mur ligase middle domain RY45_RS18270 PF00719 Inorganic pyrophosphatase RY45_RS18285 PF09695 RY45_RS18285 RY45_RS18295 PF10986 RY45_RS18295 RY45_RS18300 PF00005 ABC transporter RY45_RS18305 PF02687 RY45_RS18305 RY45_RS18305 PF12704 MacB-like periplasmic core domain RY45_RS18310 PF11736 Protein of unknown function (DUF3299) RY45_RS18315 PF10987 RY45_RS18315 RY45_RS18320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS18320 PF08447 PAS fold RY45_RS18330 PF01583 Adenylylsulphate kinase RY45_RS18335 PF02080 TrkA-C domain RY45_RS18335 PF03600 Citrate transporter RY45_RS18340 PF00009 Elongation factor Tu GTP binding domain RY45_RS18345 PF01507 Phosphoadenosine phosphosulfate reductase family RY45_RS18350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_RS18350 PF10414 Sirohaem synthase dimerisation region RY45_RS18350 PF13241 Putative NAD(P)-binding RY45_RS18350 PF14824 Sirohaem biosynthesis protein central RY45_RS18355 PF01145 SPFH domain / Band 7 family RY45_RS18360 PF01957 NfeD-like C-terminal, partner-binding RY45_RS18365 PF00571 CBS domain RY45_RS18370 PF00005 ABC transporter RY45_RS18370 PF12848 ABC transporter RY45_RS18370 PF16326 RY45_RS18370 RY45_RS18375 PF09523 RY45_RS18375 RY45_RS18380 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ RY45_RS18390 PF14082 RY45_RS18390 RY45_RS18395 PF09834 RY45_RS18395 RY45_RS18400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS18405 PF13411 MerR HTH family regulatory protein RY45_RS18410 PF02525 Flavodoxin-like fold RY45_RS18415 PF00474 Sodium:solute symporter family RY45_RS18420 PF03734 L,D-transpeptidase catalytic domain RY45_RS18425 PF00924 Mechanosensitive ion channel RY45_RS18430 PF00871 Acetokinase family RY45_RS18435 PF04074 Domain of unknown function (DUF386) RY45_RS18440 PF01553 Acyltransferase RY45_RS18445 PF07731 Multicopper oxidase RY45_RS18445 PF07732 Multicopper oxidase RY45_RS18450 PF01177 Asp/Glu/Hydantoin racemase RY45_RS18455 PF01810 RY45_RS18455 RY45_RS18460 PF01810 RY45_RS18460 RY45_RS18465 PF00155 Aminotransferase class I and II RY45_RS18465 PF00392 Bacterial regulatory proteins, gntR family RY45_RS18480 PF11340 RY45_RS18480 RY45_RS18490 PF00209 Sodium:neurotransmitter symporter family RY45_RS18495 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS18500 PF00209 Sodium:neurotransmitter symporter family RY45_RS18505 PF03171 2OG-Fe(II) oxygenase superfamily RY45_RS18505 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RY45_RS18510 PF10973 RY45_RS18510 RY45_RS18515 PF08282 haloacid dehalogenase-like hydrolase RY45_RS18520 PF07690 Major Facilitator Superfamily RY45_RS18525 PF08279 HTH domain RY45_RS18530 PF01037 AsnC family RY45_RS18530 PF13412 Winged helix-turn-helix DNA-binding RY45_RS18545 PF01047 MarR family RY45_RS18550 PF02566 OsmC-like protein RY45_RS18555 PF00107 Zinc-binding dehydrogenase RY45_RS18555 PF16884 RY45_RS18555 RY45_RS18560 PF00293 NUDIX domain RY45_RS18565 PF02417 RY45_RS18565 RY45_RS18570 PF01641 SelR domain RY45_RS18575 PF00128 Alpha amylase, catalytic domain RY45_RS18575 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_RS18580 PF00128 Alpha amylase, catalytic domain RY45_RS18580 PF02806 Alpha amylase, C-terminal all-beta domain RY45_RS18580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RY45_RS18585 PF02446 4-alpha-glucanotransferase RY45_RS18590 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_RS18590 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RY45_RS18595 PF01263 Aldose 1-epimerase RY45_RS18600 PF02445 Quinolinate synthetase A protein RY45_RS18605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS18605 PF00672 HAMP domain RY45_RS18605 PF02743 Cache domain RY45_RS18640 PF13174 Tetratricopeptide repeat RY45_RS18640 PF13432 Tetratricopeptide repeat RY45_RS18640 PF16331 RY45_RS18640 RY45_RS18645 PF00691 OmpA family RY45_RS18650 PF04052 TolB amino-terminal domain RY45_RS18650 PF07676 WD40-like Beta Propeller Repeat RY45_RS18655 PF06519 TolA C-terminal RY45_RS18660 PF02472 Biopolymer transport protein ExbD/TolR RY45_RS18665 PF01618 RY45_RS18665 RY45_RS18670 PF03061 Thioesterase superfamily RY45_RS18675 PF09600 RY45_RS18675 RY45_RS18685 PF02322 RY45_RS18685 RY45_RS18690 PF01654 RY45_RS18690 RY45_RS18695 PF05491 Holliday junction DNA helicase ruvB C-terminus RY45_RS18695 PF05496 Holliday junction DNA helicase ruvB N-terminus RY45_RS18700 PF01330 RuvA N terminal domain RY45_RS18700 PF07499 RuvA, C-terminal domain RY45_RS18700 PF14520 Helix-hairpin-helix domain RY45_RS18705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS18705 PF00672 HAMP domain RY45_RS18710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RY45_RS18710 PF03129 Anticodon binding domain RY45_RS18710 PF04073 Aminoacyl-tRNA editing domain RY45_RS18715 PF00106 short chain dehydrogenase RY45_RS18725 PF04314 Protein of unknown function (DUF461) RY45_RS18730 PF00378 Enoyl-CoA hydratase/isomerase family RY45_RS18735 PF10952 RY45_RS18735 RY45_RS18740 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS18745 PF08857 Putative ParB-like nuclease RY45_RS18750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RY45_RS18760 PF14467 Domain of unknown function (DUF4426) RY45_RS18765 PF02594 Uncharacterised ACR, YggU family COG1872 RY45_RS18770 PF02325 RY45_RS18770 RY45_RS18775 PF03807 NADP oxidoreductase coenzyme F420-dependent RY45_RS18775 PF14748 Pyrroline-5-carboxylate reductase dimerisation RY45_RS18780 PF01168 Alanine racemase, N-terminal domain RY45_RS18785 PF00437 Type II/IV secretion system protein RY45_RS18790 PF00437 Type II/IV secretion system protein RY45_RS18795 PF03883 RY45_RS18795 RY45_RS18800 PF00270 DEAD/DEAH box helicase RY45_RS18800 PF00271 Helicase conserved C-terminal domain RY45_RS18805 PF05175 Methyltransferase small domain RY45_RS18810 PF05525 RY45_RS18810 RY45_RS18815 PF05525 RY45_RS18815 RY45_RS18825 PF13690 Chemotaxis phosphatase CheX RY45_RS18835 PF01207 Dihydrouridine synthase (Dus) RY45_RS18845 PF00216 Bacterial DNA-binding protein RY45_RS18850 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ RY45_RS18855 PF07238 PilZ domain RY45_RS18860 PF13481 AAA domain RY45_RS18860 PF13541 Subunit ChlI of Mg-chelatase RY45_RS18865 PF07238 PilZ domain RY45_RS18870 PF00561 alpha/beta hydrolase fold RY45_RS18875 PF12710 haloacid dehalogenase-like hydrolase RY45_RS18880 PF10144 RY45_RS18880 RY45_RS18885 PF00989 PAS fold RY45_RS18885 PF00990 GGDEF domain RY45_RS18885 PF01590 GAF domain RY45_RS18885 PF08447 PAS fold RY45_RS18885 PF08448 PAS fold RY45_RS18890 PF01048 Phosphorylase superfamily RY45_RS18895 PF01676 Metalloenzyme superfamily RY45_RS18900 PF00591 Glycosyl transferase family, a/b domain RY45_RS18900 PF02885 Glycosyl transferase family, helical bundle domain RY45_RS18900 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RY45_RS18905 PF01791 DeoC/LacD family aldolase RY45_RS18910 PF07235 RY45_RS18910 RY45_RS18915 PF01773 Na+ dependent nucleoside transporter N-terminus RY45_RS18915 PF07662 Na+ dependent nucleoside transporter C-terminus RY45_RS18915 PF07670 Nucleoside recognition RY45_RS18920 PF01026 TatD related DNase RY45_RS18925 PF07963 Prokaryotic N-terminal methylation motif RY45_RS18930 PF01938 TRAM domain RY45_RS18930 PF05958 tRNA (Uracil-5-)-methyltransferase RY45_RS18935 PF00909 Ammonium Transporter Family RY45_RS18940 PF00589 Phage integrase family RY45_RS18955 PF00717 Peptidase S24-like RY45_RS18955 PF01381 Helix-turn-helix RY45_RS18970 PF06892 RY45_RS18970 RY45_RS18985 PF01381 Helix-turn-helix RY45_RS19005 PF05840 RY45_RS19005 RY45_RS19020 PF04860 Phage portal protein RY45_RS19025 PF03237 Terminase-like family RY45_RS19025 PF06056 Putative ATPase subunit of terminase (gpP-like) RY45_RS19030 PF05929 RY45_RS19030 RY45_RS19035 PF05125 RY45_RS19035 RY45_RS19040 PF05944 RY45_RS19040 RY45_RS19045 PF05926 RY45_RS19045 RY45_RS19050 PF06891 RY45_RS19050 RY45_RS19055 PF10758 RY45_RS19055 RY45_RS19060 PF10772 RY45_RS19060 RY45_RS19065 PF01258 Prokaryotic dksA/traR C4-type zinc finger RY45_RS19070 PF05106 RY45_RS19070 RY45_RS19075 PF05257 CHAP domain RY45_RS19090 PF10963 RY45_RS19090 RY45_RS19095 PF10145 RY45_RS19095 RY45_RS19100 PF10761 RY45_RS19100 RY45_RS19105 PF04865 RY45_RS19105 RY45_RS19110 PF09684 RY45_RS19110 RY45_RS19115 PF12571 RY45_RS19115 RY45_RS19120 PF02413 RY45_RS19120 RY45_RS19145 PF02661 Fic/DOC family RY45_RS19155 PF06271 RY45_RS19155 RY45_RS19160 PF03739 RY45_RS19160 RY45_RS19165 PF03739 RY45_RS19165 RY45_RS19170 PF00883 Cytosol aminopeptidase family, catalytic domain RY45_RS19170 PF02789 Cytosol aminopeptidase family, N-terminal domain RY45_RS19175 PF04364 DNA polymerase III chi subunit, HolC RY45_RS19180 PF00133 tRNA synthetases class I (I, L, M and V) RY45_RS19180 PF08264 Anticodon-binding domain of tRNA RY45_RS19180 PF10458 Valyl tRNA synthetase tRNA binding arm RY45_RS19185 PF00571 CBS domain RY45_RS19185 PF01595 RY45_RS19185 RY45_RS19185 PF03471 Transporter associated domain RY45_RS19190 PF09335 RY45_RS19190 RY45_RS19195 PF00768 D-alanyl-D-alanine carboxypeptidase RY45_RS19230 PF02599 Global regulator protein family RY45_RS19235 PF00696 Amino acid kinase family RY45_RS19235 PF01842 ACT domain RY45_RS19235 PF13840 ACT domain RY45_RS19240 PF01411 tRNA synthetases class II (A) RY45_RS19240 PF02272 DHHA1 domain RY45_RS19240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RY45_RS19245 PF02631 RecX family RY45_RS19250 PF00154 recA bacterial DNA recombination protein RY45_RS19255 PF02464 Competence-damaged protein RY45_RS19260 PF00488 MutS domain V RY45_RS19260 PF01624 MutS domain I RY45_RS19260 PF05188 MutS domain II RY45_RS19260 PF05190 MutS family domain IV RY45_RS19260 PF05192 MutS domain III RY45_RS19265 PF02028 BCCT family transporter RY45_RS19275 PF01047 MarR family RY45_RS19280 PF12762 RY45_RS19280 RY45_RS19285 PF04222 Protein of unknown function (DUF416) RY45_RS19290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_RS19295 PF01551 Peptidase family M23 RY45_RS19295 PF04225 Opacity-associated protein A LysM-like domain RY45_RS19300 PF16448 RY45_RS19300 RY45_RS19305 PF16868 RY45_RS19305 RY45_RS19310 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP RY45_RS19315 PF01297 Periplasmic solute binding protein family RY45_RS19320 PF00005 ABC transporter RY45_RS19325 PF00950 RY45_RS19325 RY45_RS19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS19330 PF03466 LysR substrate binding domain RY45_RS19335 PF00892 EamA-like transporter family RY45_RS19340 PF03167 Uracil DNA glycosylase superfamily RY45_RS19345 PF00892 EamA-like transporter family RY45_RS19355 PF01541 GIY-YIG catalytic domain RY45_RS19360 PF09583 RY45_RS19360 RY45_RS19365 PF04024 RY45_RS19365 RY45_RS19370 PF04012 RY45_RS19370 RY45_RS19375 PF01553 Acyltransferase RY45_RS19385 PF02683 RY45_RS19385 RY45_RS19385 PF11412 Disulphide bond corrector protein DsbC RY45_RS19385 PF13899 Thioredoxin-like RY45_RS19390 PF13462 Thioredoxin RY45_RS19395 PF08534 Redoxin RY45_RS19400 PF00226 DnaJ domain RY45_RS19430 PF07690 Major Facilitator Superfamily RY45_RS19435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS19435 PF03466 LysR substrate binding domain RY45_RS19440 PF00521 DNA gyrase/topoisomerase IV, subunit A RY45_RS19440 PF03989 DNA gyrase C-terminal domain, beta-propeller RY45_RS19445 PF00204 DNA gyrase B RY45_RS19445 PF00986 DNA gyrase B subunit, carboxyl terminus RY45_RS19445 PF01751 Toprim domain RY45_RS19445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS19450 PF04632 RY45_RS19450 RY45_RS19455 PF13437 HlyD family secretion protein RY45_RS19455 PF13533 Biotin-lipoyl like RY45_RS19460 PF07869 RY45_RS19460 RY45_RS19465 PF04828 Glutathione-dependent formaldehyde-activating enzyme RY45_RS19470 PF00293 NUDIX domain RY45_RS19470 PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal RY45_RS19475 PF05728 Uncharacterised protein family (UPF0227) RY45_RS19480 PF00149 Calcineurin-like phosphoesterase RY45_RS19485 PF06853 RY45_RS19485 RY45_RS19490 PF00293 NUDIX domain RY45_RS19495 PF02321 Outer membrane efflux protein RY45_RS19500 PF00294 pfkB family carbohydrate kinase RY45_RS19500 PF01467 Cytidylyltransferase RY45_RS19505 PF03279 RY45_RS19505 RY45_RS19510 PF03544 Gram-negative bacterial TonB protein C-terminal RY45_RS19515 PF01928 CYTH domain RY45_RS19520 PF01865 Protein of unknown function DUF47 RY45_RS19525 PF01384 RY45_RS19525 RY45_RS19530 PF04073 Aminoacyl-tRNA editing domain RY45_RS19535 PF07350 Protein of unknown function (DUF1479) RY45_RS19540 PF13302 Acetyltransferase (GNAT) domain RY45_RS19545 PF00581 Rhodanese-like domain RY45_RS19550 PF02566 OsmC-like protein RY45_RS19555 PF00155 Aminotransferase class I and II RY45_RS19555 PF00392 Bacterial regulatory proteins, gntR family RY45_RS19560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS19560 PF03466 LysR substrate binding domain RY45_RS19565 PF03788 RY45_RS19565 RY45_RS19570 PF04172 RY45_RS19570 RY45_RS19585 PF01743 Poly A polymerase head domain RY45_RS19585 PF01966 HD domain RY45_RS19585 PF12627 Probable RNA and SrmB- binding site of polymerase A RY45_RS19590 PF01471 Putative peptidoglycan binding domain RY45_RS19590 PF13401 AAA domain RY45_RS19595 PF16537 RY45_RS19595 RY45_RS19600 PF00633 Helix-hairpin-helix motif RY45_RS19600 PF00730 HhH-GPD superfamily base excision DNA repair protein RY45_RS19600 PF10576 Iron-sulfur binding domain of endonuclease III RY45_RS19600 PF14815 NUDIX domain RY45_RS19605 PF04362 Bacterial Fe(2+) trafficking RY45_RS19610 PF01464 Transglycosylase SLT domain RY45_RS19610 PF11873 Domain of unknown function (DUF3393) RY45_RS19615 PF04076 Bacterial OB fold (BOF) protein RY45_RS19620 PF00657 GDSL-like Lipase/Acylhydrolase RY45_RS19625 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS19630 PF00691 OmpA family RY45_RS19630 PF01389 OmpA-like transmembrane domain RY45_RS19635 PF03886 Protein of unknown function (DUF330) RY45_RS19640 PF02470 RY45_RS19640 RY45_RS19645 PF04403 RY45_RS19645 RY45_RS19655 PF13419 Haloacid dehalogenase-like hydrolase RY45_RS19660 PF08668 HDOD domain RY45_RS19665 PF00990 GGDEF domain RY45_RS19670 PF00701 Dihydrodipicolinate synthetase family RY45_RS19675 PF05175 Methyltransferase small domain RY45_RS19675 PF08468 Methyltransferase small domain N-terminal RY45_RS19680 PF00483 Nucleotidyl transferase RY45_RS19685 PF00534 Glycosyl transferases group 1 RY45_RS19685 PF08323 Starch synthase catalytic domain RY45_RS19715 PF10719 RY45_RS19715 RY45_RS19725 PF03553 RY45_RS19725 RY45_RS19730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS19730 PF03466 LysR substrate binding domain RY45_RS19735 PF13416 Bacterial extracellular solute-binding protein RY45_RS19740 PF00005 ABC transporter RY45_RS19740 PF08402 TOBE domain RY45_RS19745 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS19750 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS19755 PF00171 Aldehyde dehydrogenase family RY45_RS19765 PF00892 EamA-like transporter family RY45_RS19770 PF01037 AsnC family RY45_RS19770 PF13404 AsnC-type helix-turn-helix domain RY45_RS19775 PF12464 Maltose acetyltransferase RY45_RS19775 PF14602 Hexapeptide repeat of succinyl-transferase RY45_RS19780 PF00128 Alpha amylase, catalytic domain RY45_RS19780 PF16657 RY45_RS19780 RY45_RS19785 PF00367 phosphotransferase system, EIIB RY45_RS19785 PF02378 Phosphotransferase system, EIIC RY45_RS19790 PF00356 Bacterial regulatory proteins, lacI family RY45_RS19790 PF13377 Periplasmic binding protein-like domain RY45_RS19795 PF03547 RY45_RS19795 RY45_RS19800 PF00403 Heavy-metal-associated domain RY45_RS19805 PF00710 Asparaginase RY45_RS19810 PF01699 Sodium/calcium exchanger protein RY45_RS19815 PF14163 RY45_RS19815 RY45_RS19820 PF02142 MGS-like domain RY45_RS19825 PF05960 Bacterial protein of unknown function (DUF885) RY45_RS19830 PF00210 Ferritin-like domain RY45_RS19835 PF04324 BFD-like [2Fe-2S] binding domain RY45_RS19840 PF10115 RY45_RS19840 RY45_RS19845 PF05127 Helicase RY45_RS19845 PF08351 Domain of unknown function (DUF1726) RY45_RS19845 PF13718 GNAT acetyltransferase 2 RY45_RS19845 PF17176 RY45_RS19845 RY45_RS19850 PF00106 short chain dehydrogenase RY45_RS19855 PF00072 Response regulator receiver domain RY45_RS19855 PF01584 CheW-like domain RY45_RS19865 PF08020 Protein of unknown function (DUF1706) RY45_RS19875 PF07885 Ion channel RY45_RS19905 PF05954 Phage late control gene D protein (GPD) RY45_RS19910 PF05638 Protein of unknown function (DUF796) RY45_RS19935 PF02660 RY45_RS19935 RY45_RS19940 PF02152 Dihydroneopterin aldolase RY45_RS19945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RY45_RS19950 PF04073 Aminoacyl-tRNA editing domain RY45_RS19955 PF07690 Major Facilitator Superfamily RY45_RS19960 PF02492 CobW/HypB/UreG, nucleotide-binding domain RY45_RS19960 PF07683 Cobalamin synthesis protein cobW C-terminal domain RY45_RS19965 PF01565 FAD binding domain RY45_RS19965 PF04030 D-arabinono-1,4-lactone oxidase RY45_RS19970 PF01810 RY45_RS19970 RY45_RS19975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS19975 PF03466 LysR substrate binding domain RY45_RS19980 PF00563 EAL domain RY45_RS19980 PF12792 RY45_RS19980 RY45_RS19985 PF00330 Aconitase family (aconitate hydratase) RY45_RS19985 PF06434 Aconitate hydratase 2 N-terminus RY45_RS19985 PF11791 Aconitate B N-terminal domain RY45_RS19990 PF01734 Patatin-like phospholipase RY45_RS20010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_RS20010 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS20015 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RY45_RS20015 PF00364 Biotin-requiring enzyme RY45_RS20015 PF02817 e3 binding domain RY45_RS20020 PF00456 Transketolase, thiamine diphosphate binding domain RY45_RS20025 PF00392 Bacterial regulatory proteins, gntR family RY45_RS20025 PF07729 FCD domain RY45_RS20035 PF13975 RY45_RS20035 RY45_RS20040 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RY45_RS20040 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RY45_RS20050 PF00437 Type II/IV secretion system protein RY45_RS20050 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RY45_RS20055 PF00482 Type II secretion system (T2SS), protein F RY45_RS20060 PF01478 Type IV leader peptidase family RY45_RS20060 PF06750 RY45_RS20060 RY45_RS20065 PF01121 Dephospho-CoA kinase RY45_RS20070 PF07072 Protein of unknown function (DUF1342) RY45_RS20075 PF03884 Domain of unknown function (DUF329) RY45_RS20080 PF00293 NUDIX domain RY45_RS20085 PF14559 Tetratricopeptide repeat RY45_RS20090 PF01043 SecA preprotein cross-linking domain RY45_RS20090 PF02810 SEC-C motif RY45_RS20090 PF07516 SecA Wing and Scaffold domain RY45_RS20090 PF07517 SecA DEAD-like domain RY45_RS20095 PF01551 Peptidase family M23 RY45_RS20100 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RY45_RS20105 PF00091 Tubulin/FtsZ family, GTPase domain RY45_RS20105 PF12327 FtsZ family, C-terminal domain RY45_RS20110 PF02491 SHS2 domain inserted in FTSA RY45_RS20110 PF14450 Cell division protein FtsA RY45_RS20115 PF03799 Cell division protein FtsQ RY45_RS20115 PF08478 POTRA domain, FtsQ-type RY45_RS20120 PF01225 Mur ligase family, catalytic domain RY45_RS20120 PF02875 Mur ligase family, glutamate ligase domain RY45_RS20120 PF08245 Mur ligase middle domain RY45_RS20125 PF03033 Glycosyltransferase family 28 N-terminal domain RY45_RS20125 PF04101 Glycosyltransferase family 28 C-terminal domain RY45_RS20130 PF01098 RY45_RS20130 RY45_RS20135 PF02875 Mur ligase family, glutamate ligase domain RY45_RS20135 PF08245 Mur ligase middle domain RY45_RS20140 PF00953 Glycosyl transferase family 4 RY45_RS20140 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RY45_RS20145 PF01225 Mur ligase family, catalytic domain RY45_RS20145 PF02875 Mur ligase family, glutamate ligase domain RY45_RS20145 PF08245 Mur ligase middle domain RY45_RS20150 PF01225 Mur ligase family, catalytic domain RY45_RS20150 PF02875 Mur ligase family, glutamate ligase domain RY45_RS20150 PF08245 Mur ligase middle domain RY45_RS20155 PF00905 Penicillin binding protein transpeptidase domain RY45_RS20155 PF03717 Penicillin-binding Protein dimerisation domain RY45_RS20160 PF04999 RY45_RS20160 RY45_RS20165 PF01795 MraW methylase family RY45_RS20170 PF02381 MraZ protein RY45_RS20180 PF01464 Transglycosylase SLT domain RY45_RS20185 PF00691 OmpA family RY45_RS20185 PF13677 RY45_RS20185 RY45_RS20190 PF01618 RY45_RS20190 RY45_RS20195 PF04539 Sigma-70 region 3 RY45_RS20195 PF04542 Sigma-70 region 2 RY45_RS20195 PF04545 Sigma-70, region 4 RY45_RS20200 PF03748 RY45_RS20200 RY45_RS20205 PF02120 Flagellar hook-length control protein FliK RY45_RS20215 PF02561 Flagellar protein FliS RY45_RS20220 PF02465 RY45_RS20220 RY45_RS20220 PF07195 RY45_RS20220 RY45_RS20220 PF07196 Flagellin hook IN motif RY45_RS20225 PF00669 Bacterial flagellin N-terminal helical region RY45_RS20225 PF00700 Bacterial flagellin C-terminal helical region RY45_RS20235 PF01973 RY45_RS20235 RY45_RS20245 PF00669 Bacterial flagellin N-terminal helical region RY45_RS20250 PF00460 Flagella basal body rod protein RY45_RS20250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS20255 PF10135 RY45_RS20255 RY45_RS20260 PF02119 RY45_RS20260 RY45_RS20265 PF02107 RY45_RS20265 RY45_RS20270 PF00460 Flagella basal body rod protein RY45_RS20270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS20275 PF00460 Flagella basal body rod protein RY45_RS20275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS20280 PF00460 Flagella basal body rod protein RY45_RS20280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS20280 PF07559 Flagellar basal body protein FlaE RY45_RS20285 PF03963 RY45_RS20285 RY45_RS20285 PF13860 FlgD Ig-like domain RY45_RS20285 PF13861 FlgD Tudor-like domain RY45_RS20290 PF00460 Flagella basal body rod protein RY45_RS20290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RY45_RS20300 PF13144 SAF-like RY45_RS20305 PF04316 Anti-sigma-28 factor, FlgM RY45_RS20310 PF05130 FlgN protein RY45_RS20315 PF02050 Flagellar FliJ protein RY45_RS20320 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_RS20325 PF02108 RY45_RS20325 RY45_RS20330 PF01706 FliG C-terminal domain RY45_RS20330 PF14841 FliG middle domain RY45_RS20330 PF14842 FliG N-terminal domain RY45_RS20335 PF01514 Secretory protein of YscJ/FliF family RY45_RS20335 PF08345 RY45_RS20335 RY45_RS20340 PF02049 RY45_RS20340 RY45_RS20345 PF00072 Response regulator receiver domain RY45_RS20345 PF00158 Sigma-54 interaction domain RY45_RS20345 PF02954 Bacterial regulatory protein, Fis family RY45_RS20350 PF00771 FHIPEP family RY45_RS20355 PF01312 FlhB HrpN YscU SpaS Family RY45_RS20360 PF01311 RY45_RS20360 RY45_RS20365 PF01313 RY45_RS20365 RY45_RS20370 PF00813 RY45_RS20370 RY45_RS20375 PF01052 Surface presentation of antigens (SPOA) RY45_RS20380 PF01052 Surface presentation of antigens (SPOA) RY45_RS20385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_RS20390 PF04348 LppC putative lipoprotein RY45_RS20395 PF02021 Uncharacterised protein family UPF0102 RY45_RS20400 PF13580 SIS domain RY45_RS20405 PF04972 BON domain RY45_RS20410 PF04386 Stringent starvation protein B RY45_RS20415 PF00043 Glutathione S-transferase, C-terminal domain RY45_RS20415 PF13417 Glutathione S-transferase, N-terminal domain RY45_RS20420 PF02167 Cytochrome C1 family RY45_RS20425 PF00032 Cytochrome b(C-terminal)/b6/petD RY45_RS20425 PF00033 Cytochrome b(N-terminal)/b6/petB RY45_RS20430 PF00355 Rieske [2Fe-2S] domain RY45_RS20430 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RY45_RS20435 PF00380 Ribosomal protein S9/S16 RY45_RS20440 PF00572 Ribosomal protein L13 RY45_RS20445 PF03969 AFG1-like ATPase RY45_RS20450 PF06295 RY45_RS20450 RY45_RS20455 PF00595 PDZ domain (Also known as DHR or GLGF) RY45_RS20455 PF13180 PDZ domain RY45_RS20455 PF13365 Trypsin-like peptidase domain RY45_RS20460 PF13180 PDZ domain RY45_RS20460 PF13365 Trypsin-like peptidase domain RY45_RS20470 PF14272 RY45_RS20470 RY45_RS20475 PF14189 RY45_RS20475 RY45_RS20480 PF14188 RY45_RS20480 RY45_RS20485 PF14187 RY45_RS20485 RY45_RS20490 PF01979 Amidohydrolase family RY45_RS20495 PF03841 L-seryl-tRNA selenium transferase RY45_RS20500 PF07071 Protein of unknown function (DUF1341) RY45_RS20505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS20505 PF00874 PRD domain RY45_RS20505 PF05043 Mga helix-turn-helix domain RY45_RS20505 PF08279 HTH domain RY45_RS20510 PF00381 PTS HPr component phosphorylation site RY45_RS20515 PF03668 RY45_RS20515 RY45_RS20520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RY45_RS20525 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RY45_RS20530 PF00309 RY45_RS20530 RY45_RS20530 PF04552 Sigma-54, DNA binding domain RY45_RS20530 PF04963 Sigma-54 factor, core binding domain RY45_RS20535 PF00005 ABC transporter RY45_RS20535 PF12399 Branched-chain amino acid ATP-binding cassette transporter RY45_RS20540 PF03968 OstA-like protein RY45_RS20545 PF06835 Lipopolysaccharide-assembly, LptC-related RY45_RS20550 PF08282 haloacid dehalogenase-like hydrolase RY45_RS20555 PF00571 CBS domain RY45_RS20555 PF01380 SIS domain RY45_RS20560 PF00005 ABC transporter RY45_RS20565 PF02405 RY45_RS20565 RY45_RS20570 PF02470 RY45_RS20570 RY45_RS20575 PF05494 Toluene tolerance, Ttg2 RY45_RS20580 PF13466 STAS domain RY45_RS20585 PF01722 BolA-like protein RY45_RS20590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RY45_RS20595 PF01523 Putative modulator of DNA gyrase RY45_RS20600 PF04751 Protein of unknown function (DUF615) RY45_RS20605 PF00912 Transglycosylase RY45_RS20610 PF04363 RY45_RS20610 RY45_RS20635 PF05940 RY45_RS20635 RY45_RS20640 PF01381 Helix-turn-helix RY45_RS20640 PF07883 Cupin domain RY45_RS20645 PF03594 RY45_RS20645 RY45_RS20650 PF11301 RY45_RS20650 RY45_RS20655 PF02219 Methylenetetrahydrofolate reductase RY45_RS20660 PF13673 Acetyltransferase (GNAT) domain RY45_RS20665 PF01547 Bacterial extracellular solute-binding protein RY45_RS20670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS20670 PF00672 HAMP domain RY45_RS20670 PF12729 RY45_RS20670 RY45_RS20675 PF03922 OmpW family RY45_RS20680 PF00990 GGDEF domain RY45_RS20680 PF05228 RY45_RS20680 RY45_RS20685 PF00005 ABC transporter RY45_RS20690 PF00196 Bacterial regulatory proteins, luxR family RY45_RS20695 PF00436 Single-strand binding protein family RY45_RS20700 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS20705 PF01545 Cation efflux family RY45_RS20705 PF16916 RY45_RS20705 RY45_RS20710 PF11656 RY45_RS20710 RY45_RS20715 PF00313 'Cold-shock' DNA-binding domain RY45_RS20725 PF00593 TonB dependent receptor RY45_RS20725 PF07715 TonB-dependent Receptor Plug Domain RY45_RS20730 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS20730 PF00990 GGDEF domain RY45_RS20735 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS20735 PF00672 HAMP domain RY45_RS20735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS20740 PF00072 Response regulator receiver domain RY45_RS20740 PF00486 Transcriptional regulatory protein, C terminal RY45_RS20765 PF00990 GGDEF domain RY45_RS20765 PF08447 PAS fold RY45_RS20770 PF02311 AraC-like ligand binding domain RY45_RS20770 PF12833 Helix-turn-helix domain RY45_RS20775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS20785 PF13538 UvrD-like helicase C-terminal domain RY45_RS20785 PF13604 AAA domain RY45_RS20790 PF00580 UvrD/REP helicase N-terminal domain RY45_RS20790 PF12705 PD-(D/E)XK nuclease superfamily RY45_RS20790 PF13361 UvrD-like helicase C-terminal domain RY45_RS20795 PF04257 Exodeoxyribonuclease V, gamma subunit RY45_RS20800 PF07681 RY45_RS20800 RY45_RS20805 PF02678 Pirin RY45_RS20815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS20815 PF03466 LysR substrate binding domain RY45_RS20820 PF13443 Cro/C1-type HTH DNA-binding domain RY45_RS20825 PF00392 Bacterial regulatory proteins, gntR family RY45_RS20825 PF07702 UTRA domain RY45_RS20830 PF13343 Bacterial extracellular solute-binding protein RY45_RS20835 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase RY45_RS20840 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS20845 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS20850 PF00005 ABC transporter RY45_RS20850 PF08402 TOBE domain RY45_RS20855 PF12710 haloacid dehalogenase-like hydrolase RY45_RS20860 PF00990 GGDEF domain RY45_RS20860 PF02743 Cache domain RY45_RS20865 PF09980 RY45_RS20865 RY45_RS20870 PF00892 EamA-like transporter family RY45_RS20875 PF06445 GyrI-like small molecule binding domain RY45_RS20875 PF12833 Helix-turn-helix domain RY45_RS20880 PF00583 Acetyltransferase (GNAT) family RY45_RS20885 PF00199 Catalase RY45_RS20885 PF06628 Catalase-related immune-responsive RY45_RS20890 PF07383 RY45_RS20890 RY45_RS20900 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS20910 PF00293 NUDIX domain RY45_RS20910 PF01569 PAP2 superfamily RY45_RS20915 PF01594 RY45_RS20915 RY45_RS20930 PF04371 Porphyromonas-type peptidyl-arginine deiminase RY45_RS20935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS20935 PF03466 LysR substrate binding domain RY45_RS20940 PF00158 Sigma-54 interaction domain RY45_RS20940 PF00989 PAS fold RY45_RS20940 PF02954 Bacterial regulatory protein, Fis family RY45_RS20945 PF00465 Iron-containing alcohol dehydrogenase RY45_RS20950 PF00381 PTS HPr component phosphorylation site RY45_RS20950 PF03610 PTS system fructose IIA component RY45_RS20955 PF02734 DAK2 domain RY45_RS20960 PF02733 Dak1 domain RY45_RS20965 PF12762 RY45_RS20965 RY45_RS20970 PF00860 Permease family RY45_RS20975 PF07883 Cupin domain RY45_RS21005 PF13242 HAD-hyrolase-like RY45_RS21010 PF00009 Elongation factor Tu GTP binding domain RY45_RS21010 PF03143 Elongation factor Tu C-terminal domain RY45_RS21010 PF03144 Elongation factor Tu domain 2 RY45_RS21015 PF00009 Elongation factor Tu GTP binding domain RY45_RS21015 PF00679 Elongation factor G C-terminus RY45_RS21015 PF03144 Elongation factor Tu domain 2 RY45_RS21015 PF03764 Elongation factor G, domain IV RY45_RS21015 PF14492 Elongation Factor G, domain II RY45_RS21020 PF00177 Ribosomal protein S7p/S5e RY45_RS21030 PF04077 DsrH like protein RY45_RS21035 PF02635 DsrE/DsrF-like family RY45_RS21040 PF02635 DsrE/DsrF-like family RY45_RS21045 PF01042 Endoribonuclease L-PSP RY45_RS21050 PF08348 RY45_RS21050 RY45_RS21050 PF13309 RY45_RS21050 RY45_RS21055 PF00623 RNA polymerase Rpb1, domain 2 RY45_RS21055 PF04983 RNA polymerase Rpb1, domain 3 RY45_RS21055 PF04997 RNA polymerase Rpb1, domain 1 RY45_RS21055 PF04998 RNA polymerase Rpb1, domain 5 RY45_RS21055 PF05000 RNA polymerase Rpb1, domain 4 RY45_RS21060 PF00562 RNA polymerase Rpb2, domain 6 RY45_RS21060 PF04560 RNA polymerase Rpb2, domain 7 RY45_RS21060 PF04561 RNA polymerase Rpb2, domain 2 RY45_RS21060 PF04563 RNA polymerase beta subunit RY45_RS21060 PF04565 RNA polymerase Rpb2, domain 3 RY45_RS21060 PF10385 RNA polymerase beta subunit external 1 domain RY45_RS21065 PF00542 Ribosomal protein L7/L12 C-terminal domain RY45_RS21065 PF16320 RY45_RS21065 RY45_RS21070 PF00466 Ribosomal protein L10 RY45_RS21075 PF00687 Ribosomal protein L1p/L10e family RY45_RS21080 PF00298 Ribosomal protein L11, RNA binding domain RY45_RS21080 PF03946 Ribosomal protein L11, N-terminal domain RY45_RS21085 PF00467 KOW motif RY45_RS21085 PF02357 Transcription termination factor nusG RY45_RS21090 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RY45_RS21100 PF00009 Elongation factor Tu GTP binding domain RY45_RS21100 PF03143 Elongation factor Tu C-terminal domain RY45_RS21100 PF03144 Elongation factor Tu domain 2 RY45_RS21115 PF00485 Phosphoribulokinase / Uridine kinase family RY45_RS21120 PF02237 Biotin protein ligase C terminal domain RY45_RS21120 PF03099 Biotin/lipoate A/B protein ligase family RY45_RS21120 PF08279 HTH domain RY45_RS21125 PF01565 FAD binding domain RY45_RS21125 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RY45_RS21130 PF02254 TrkA-N domain RY45_RS21135 PF02386 Cation transport protein RY45_RS21140 PF01131 DNA topoisomerase RY45_RS21140 PF01751 Toprim domain RY45_RS21145 PF03264 NapC/NirT cytochrome c family, N-terminal region RY45_RS21150 PF00384 Molybdopterin oxidoreductase RY45_RS21150 PF01568 Molydopterin dinucleotide binding domain RY45_RS21150 PF10518 TAT (twin-arginine translocation) pathway signal sequence RY45_RS21160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS21165 PF00072 Response regulator receiver domain RY45_RS21165 PF00486 Transcriptional regulatory protein, C terminal RY45_RS21175 PF13670 RY45_RS21175 RY45_RS21180 PF01794 RY45_RS21180 RY45_RS21185 PF00174 Oxidoreductase molybdopterin binding domain RY45_RS21190 PF06496 RY45_RS21190 RY45_RS21195 PF00072 Response regulator receiver domain RY45_RS21195 PF00158 Sigma-54 interaction domain RY45_RS21205 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS21205 PF00672 HAMP domain RY45_RS21205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS21210 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RY45_RS21215 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS21220 PF00571 CBS domain RY45_RS21225 PF10063 RY45_RS21225 RY45_RS21230 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS21235 PF01037 AsnC family RY45_RS21235 PF13412 Winged helix-turn-helix DNA-binding RY45_RS21240 PF03590 Aspartate-ammonia ligase RY45_RS21245 PF00753 Metallo-beta-lactamase superfamily RY45_RS21250 PF00004 ATPase family associated with various cellular activities (AAA) RY45_RS21250 PF02861 Clp amino terminal domain RY45_RS21250 PF07724 AAA domain (Cdc48 subfamily) RY45_RS21250 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_RS21255 PF02578 Multi-copper polyphenol oxidoreductase laccase RY45_RS21260 PF00849 RNA pseudouridylate synthase RY45_RS21260 PF01479 S4 domain RY45_RS21265 PF13525 Outer membrane lipoprotein RY45_RS21270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RY45_RS21270 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS21275 PF00375 Sodium:dicarboxylate symporter family RY45_RS21280 PF03313 RY45_RS21280 RY45_RS21285 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS21290 PF02233 NAD(P) transhydrogenase beta subunit RY45_RS21295 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RY45_RS21295 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RY45_RS21295 PF12769 Domain of unknown function (DUF3814) RY45_RS21300 PF00465 Iron-containing alcohol dehydrogenase RY45_RS21305 PF06719 RY45_RS21305 RY45_RS21305 PF12833 Helix-turn-helix domain RY45_RS21310 PF08212 Lipocalin-like domain RY45_RS21315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS21315 PF00672 HAMP domain RY45_RS21315 PF02743 Cache domain RY45_RS21320 PF02666 RY45_RS21320 RY45_RS21320 PF12588 RY45_RS21320 RY45_RS21335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_RS21335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_RS21340 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain RY45_RS21340 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain RY45_RS21345 PF01316 Arginine repressor, DNA binding domain RY45_RS21345 PF02863 Arginine repressor, C-terminal domain RY45_RS21350 PF03606 RY45_RS21350 RY45_RS21355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RY45_RS21355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RY45_RS21360 PF00696 Amino acid kinase family RY45_RS21365 PF02274 Amidinotransferase RY45_RS21370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RY45_RS21380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS21380 PF00672 HAMP domain RY45_RS21385 PF02653 RY45_RS21385 RY45_RS21390 PF00005 ABC transporter RY45_RS21395 PF13407 Periplasmic binding protein domain RY45_RS21400 PF00703 Glycosyl hydrolases family 2 RY45_RS21400 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RY45_RS21400 PF02837 Glycosyl hydrolases family 2, sugar binding domain RY45_RS21400 PF02929 Beta galactosidase small chain RY45_RS21400 PF16353 RY45_RS21400 RY45_RS21405 PF00356 Bacterial regulatory proteins, lacI family RY45_RS21405 PF13377 Periplasmic binding protein-like domain RY45_RS21410 PF16363 RY45_RS21410 RY45_RS21415 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RY45_RS21415 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RY45_RS21420 PF00288 GHMP kinases N terminal domain RY45_RS21420 PF08544 GHMP kinases C terminal RY45_RS21420 PF10509 Galactokinase galactose-binding signature RY45_RS21425 PF01263 Aldose 1-epimerase RY45_RS21430 PF00248 Aldo/keto reductase family RY45_RS21435 PF02673 RY45_RS21435 RY45_RS21440 PF12973 ChrR Cupin-like domain RY45_RS21445 PF04542 Sigma-70 region 2 RY45_RS21445 PF04545 Sigma-70, region 4 RY45_RS21450 PF02190 ATP-dependent protease La (LON) domain RY45_RS21455 PF00750 tRNA synthetases class I (R) RY45_RS21455 PF03485 Arginyl tRNA synthetase N terminal domain RY45_RS21455 PF05746 DALR anticodon binding domain RY45_RS21460 PF05036 Sporulation related domain RY45_RS21465 PF00227 Proteasome subunit RY45_RS21470 PF00004 ATPase family associated with various cellular activities (AAA) RY45_RS21470 PF07724 AAA domain (Cdc48 subfamily) RY45_RS21470 PF10431 C-terminal, D2-small domain, of ClpB protein RY45_RS21475 PF07690 Major Facilitator Superfamily RY45_RS21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RY45_RS21480 PF03466 LysR substrate binding domain RY45_RS21485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RY45_RS21485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RY45_RS21485 PF04324 BFD-like [2Fe-2S] binding domain RY45_RS21485 PF07992 Pyridine nucleotide-disulphide oxidoreductase RY45_RS21490 PF13806 Rieske-like [2Fe-2S] domain RY45_RS21495 PF01226 Formate/nitrite transporter RY45_RS21500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RY45_RS21500 PF10414 Sirohaem synthase dimerisation region RY45_RS21500 PF13241 Putative NAD(P)-binding RY45_RS21500 PF14824 Sirohaem biosynthesis protein central RY45_RS21505 PF00571 CBS domain RY45_RS21505 PF01769 Divalent cation transporter RY45_RS21505 PF03448 MgtE intracellular N domain RY45_RS21510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RY45_RS21510 PF00672 HAMP domain RY45_RS21515 PF03737 Demethylmenaquinone methyltransferase RY45_RS21520 PF02592 RY45_RS21520 RY45_RS21525 PF12305 RY45_RS21525 RY45_RS21530 PF02696 RY45_RS21530 RY45_RS21535 PF00034 Cytochrome c RY45_RS21540 PF00270 DEAD/DEAH box helicase RY45_RS21540 PF00271 Helicase conserved C-terminal domain RY45_RS21540 PF00570 HRDC domain RY45_RS21540 PF09382 RQC domain RY45_RS21540 PF16124 RY45_RS21540 RY45_RS21545 PF03061 Thioesterase superfamily RY45_RS21560 PF03473 MOSC domain RY45_RS21560 PF03475 3-alpha domain RY45_RS21565 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS21570 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS21575 PF00005 ABC transporter RY45_RS21575 PF08402 TOBE domain RY45_RS21580 PF13416 Bacterial extracellular solute-binding protein RY45_RS21585 PF13416 Bacterial extracellular solute-binding protein RY45_RS21590 PF00202 Aminotransferase class-III RY45_RS21595 PF00120 Glutamine synthetase, catalytic domain RY45_RS21600 PF01258 Prokaryotic dksA/traR C4-type zinc finger RY45_RS21610 PF06127 RY45_RS21610 RY45_RS21615 PF05981 RY45_RS21615 RY45_RS21620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RY45_RS21620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RY45_RS21625 PF00012 Hsp70 protein RY45_RS21630 PF03724 META domain RY45_RS21635 PF08668 HDOD domain RY45_RS21640 PF00128 Alpha amylase, catalytic domain RY45_RS21640 PF16657 RY45_RS21640 RY45_RS21645 PF02719 Polysaccharide biosynthesis protein RY45_RS21650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RY45_RS21655 PF12804 MobA-like NTP transferase domain RY45_RS21660 PF00117 Glutamine amidotransferase class-I RY45_RS21665 PF00391 PEP-utilising enzyme, mobile domain RY45_RS21665 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RY45_RS21670 PF08241 Methyltransferase domain RY45_RS21685 PF03275 UDP-galactopyranose mutase RY45_RS21685 PF13450 NAD(P)-binding Rossmann-like domain RY45_RS21690 PF00535 Glycosyl transferase family 2 RY45_RS21695 PF05893 Acyl-CoA reductase (LuxC) RY45_RS21700 PF04443 RY45_RS21700 RY45_RS21705 PF00501 AMP-binding enzyme RY45_RS21710 PF13561 Enoyl-(Acyl carrier protein) reductase RY45_RS21720 PF13302 Acetyltransferase (GNAT) domain RY45_RS21725 PF02348 Cytidylyltransferase RY45_RS21730 PF04101 Glycosyltransferase family 28 C-terminal domain RY45_RS21735 PF03102 NeuB family RY45_RS21735 PF08666 SAF domain RY45_RS21740 PF01973 RY45_RS21740 RY45_RS21755 PF09940 Domain of unknown function (DUF2172) RY45_RS21755 PF16221 RY45_RS21755 RY45_RS21755 PF16254 RY45_RS21755 RY45_RS21760 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RY45_RS21765 PF02522 Aminoglycoside 3-N-acetyltransferase RY45_RS21780 PF01923 Cobalamin adenosyltransferase RY45_RS21790 PF05958 tRNA (Uracil-5-)-methyltransferase RY45_RS21795 PF00072 Response regulator receiver domain RY45_RS21795 PF00486 Transcriptional regulatory protein, C terminal RY45_RS21800 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS21800 PF00672 HAMP domain RY45_RS21800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS21810 PF00390 Malic enzyme, N-terminal domain RY45_RS21810 PF03949 Malic enzyme, NAD binding domain RY45_RS21815 PF11066 RY45_RS21815 RY45_RS21815 PF13460 NADH(P)-binding RY45_RS21820 PF01197 Ribosomal protein L31 RY45_RS21825 PF00270 DEAD/DEAH box helicase RY45_RS21825 PF00271 Helicase conserved C-terminal domain RY45_RS21835 PF00440 Bacterial regulatory proteins, tetR family RY45_RS21840 PF04982 RY45_RS21840 RY45_RS21845 PF00691 OmpA family RY45_RS21845 PF01389 OmpA-like transmembrane domain RY45_RS21850 PF00291 Pyridoxal-phosphate dependent enzyme RY45_RS21850 PF00585 C-terminal regulatory domain of Threonine dehydratase RY45_RS21855 PF00920 Dehydratase family RY45_RS21860 PF01063 Aminotransferase class IV RY45_RS21865 PF13710 ACT domain RY45_RS21870 PF00205 Thiamine pyrophosphate enzyme, central domain RY45_RS21870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RY45_RS21870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RY45_RS21875 PF01078 Magnesium chelatase, subunit ChlI RY45_RS21875 PF13335 RY45_RS21875 RY45_RS21875 PF13541 Subunit ChlI of Mg-chelatase RY45_RS21880 PF01553 Acyltransferase RY45_RS21885 PF01553 Acyltransferase RY45_RS21890 PF04463 RY45_RS21890 RY45_RS21900 PF00857 Isochorismatase family RY45_RS21905 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RY45_RS21910 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein RY45_RS21915 PF00005 ABC transporter RY45_RS21920 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS21925 PF01323 DSBA-like thioredoxin domain RY45_RS21930 PF01636 Phosphotransferase enzyme family RY45_RS21935 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RY45_RS21935 PF12801 RY45_RS21935 RY45_RS21935 PF13746 4Fe-4S dicluster domain RY45_RS21940 PF06288 Protein of unknown function (DUF1040) RY45_RS21945 PF00990 GGDEF domain RY45_RS21950 PF00376 MerR family regulatory protein RY45_RS21950 PF09278 MerR, DNA binding RY45_RS21955 PF00122 E1-E2 ATPase RY45_RS21955 PF00403 Heavy-metal-associated domain RY45_RS21955 PF00702 haloacid dehalogenase-like hydrolase RY45_RS21960 PF00156 Phosphoribosyl transferase domain RY45_RS21965 PF01138 3' exoribonuclease family, domain 1 RY45_RS21965 PF03725 3' exoribonuclease family, domain 2 RY45_RS21970 PF03755 RY45_RS21970 RY45_RS21970 PF08340 RY45_RS21970 RY45_RS21975 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_RS21980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RY45_RS21990 PF01755 RY45_RS21990 RY45_RS21995 PF04932 RY45_RS21995 RY45_RS22000 PF01522 Polysaccharide deacetylase RY45_RS22000 PF13439 Glycosyltransferase Family 4 RY45_RS22000 PF13692 Glycosyl transferases group 1 RY45_RS22005 PF01370 NAD dependent epimerase/dehydratase family RY45_RS22010 PF00440 Bacterial regulatory proteins, tetR family RY45_RS22010 PF13972 Bacterial transcriptional repressor RY45_RS22015 PF00155 Aminotransferase class I and II RY45_RS22020 PF00107 Zinc-binding dehydrogenase RY45_RS22020 PF08240 Alcohol dehydrogenase GroES-like domain RY45_RS22025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RY45_RS22030 PF00563 EAL domain RY45_RS22030 PF00990 GGDEF domain RY45_RS22035 PF00580 UvrD/REP helicase N-terminal domain RY45_RS22035 PF13361 UvrD-like helicase C-terminal domain RY45_RS22040 PF00266 Aminotransferase class-V RY45_RS22045 PF02657 Fe-S metabolism associated domain RY45_RS22050 PF00899 ThiF family RY45_RS22090 PF03544 Gram-negative bacterial TonB protein C-terminal RY45_RS22095 PF02472 Biopolymer transport protein ExbD/TolR RY45_RS22100 PF01618 RY45_RS22100 RY45_RS22105 PF01618 RY45_RS22105 RY45_RS22110 PF11932 RY45_RS22110 RY45_RS22115 PF00196 Bacterial regulatory proteins, luxR family RY45_RS22115 PF03472 Autoinducer binding domain RY45_RS22120 PF01380 SIS domain RY45_RS22120 PF13522 Glutamine amidotransferase domain RY45_RS22125 PF00455 RY45_RS22125 RY45_RS22125 PF08220 DeoR-like helix-turn-helix domain RY45_RS22130 PF00072 Response regulator receiver domain RY45_RS22130 PF00486 Transcriptional regulatory protein, C terminal RY45_RS22135 PF00512 His Kinase A (phospho-acceptor) domain RY45_RS22135 PF00672 HAMP domain RY45_RS22135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RY45_RS22140 PF00905 Penicillin binding protein transpeptidase domain RY45_RS22145 PF06123 RY45_RS22145 RY45_RS22150 PF00132 Bacterial transferase hexapeptide (six repeats) RY45_RS22150 PF12804 MobA-like NTP transferase domain RY45_RS22155 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RY45_RS22155 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RY45_RS22160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_RS22160 PF02874 ATP synthase alpha/beta family, beta-barrel domain RY45_RS22165 PF00231 ATP synthase RY45_RS22170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RY45_RS22170 PF00306 ATP synthase alpha/beta chain, C terminal domain RY45_RS22170 PF02874 ATP synthase alpha/beta family, beta-barrel domain RY45_RS22175 PF00213 ATP synthase delta (OSCP) subunit RY45_RS22180 PF00430 ATP synthase B/B' CF(0) RY45_RS22185 PF00137 ATP synthase subunit C RY45_RS22190 PF00119 ATP synthase A chain RY45_RS22195 PF03899 RY45_RS22195 RY45_RS22200 PF02195 ParB-like nuclease domain RY45_RS22205 PF13614 AAA domain RY45_RS22210 PF02527 rRNA small subunit methyltransferase G RY45_RS22215 PF01134 Glucose inhibited division protein A RY45_RS22215 PF13932 GidA associated domain 3 RY45_RS22220 PF00258 Flavodoxin RY45_RS22225 PF00593 TonB dependent receptor RY45_RS22225 PF07715 TonB-dependent Receptor Plug Domain RY45_RS22230 PF00005 ABC transporter RY45_RS22235 PF00005 ABC transporter RY45_RS22240 PF01497 Periplasmic binding protein RY45_RS22245 PF01032 FecCD transport family RY45_RS22250 PF01926 50S ribosome-binding GTPase RY45_RS22250 PF10396 GTP-binding protein TrmE N-terminus RY45_RS22250 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE RY45_RS22255 PF02096 60Kd inner membrane protein RY45_RS22255 PF14849 YidC periplasmic domain RY45_RS22260 PF00825 Ribonuclease P RY45_RS22265 PF00468 Ribosomal protein L34 RY45_RS22270 PF00005 ABC transporter RY45_RS22275 PF00528 Binding-protein-dependent transport system inner membrane component RY45_RS22280 PF00497 Bacterial extracellular solute-binding proteins, family 3 RY45_RS22305 PF00308 Bacterial dnaA protein RY45_RS22350 PF00204 DNA gyrase B RY45_RS22350 PF01751 Toprim domain RY45_RS22355 PF01751 Toprim domain RY45_RS22400 PF00717 Peptidase S24-like RY45_RS22410 PF04862 RY45_RS22410 RY45_RS22415 PF00583 Acetyltransferase (GNAT) family RY45_RS22430 PF04830 RY45_RS22430 RY45_RS22445 PF03837 RY45_RS22445 RY45_RS22450 PF09669 RY45_RS22450 RY45_RS22470 PF00486 Transcriptional regulatory protein, C terminal RY45_RS22475 PF06527 RY45_RS22475 RY45_RS22480 PF05069 RY45_RS22480