RY45_RS00005 SM00382 ATPases associated with a variety of cellular activities RY45_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RY45_RS00010 SM00480 DNA polymerase III beta subunit RY45_RS00020 SM00387 Histidine kinase-like ATPases RY45_RS00020 SM00433 TopoisomeraseII RY45_RS00055 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS00065 SM00448 cheY-homologous receiver domain RY45_RS00065 SM00862 Transcriptional regulatory protein, C terminal RY45_RS00070 SM00387 Histidine kinase-like ATPases RY45_RS00070 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS00095 SM00091 PAS domain RY45_RS00095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS00095 SM00387 Histidine kinase-like ATPases RY45_RS00135 SM00458 Ricin-type beta-trefoil RY45_RS00155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS00155 SM00387 Histidine kinase-like ATPases RY45_RS00155 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS00160 SM00448 cheY-homologous receiver domain RY45_RS00190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS00190 SM00954 Region found in RelA / SpoT proteins RY45_RS00195 SM01409 RY45_RS00195 RY45_RS00200 SM00072 Guanylate kinase homologues. RY45_RS00215 SM00267 diguanylate cyclase RY45_RS00255 SM00267 diguanylate cyclase RY45_RS00305 SM00421 helix_turn_helix, Lux Regulon RY45_RS00305 SM00448 cheY-homologous receiver domain RY45_RS00310 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS00310 SM00387 Histidine kinase-like ATPases RY45_RS00310 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS00310 SM00448 cheY-homologous receiver domain RY45_RS00320 SM00387 Histidine kinase-like ATPases RY45_RS00325 SM00448 cheY-homologous receiver domain RY45_RS00325 SM00850 LytTr DNA-binding domain RY45_RS00340 SM01001 AIR carboxylase RY45_RS00500 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS00645 SM00360 RNA recognition motif RY45_RS00725 SM01004 Delta-aminolevulinic acid dehydratase RY45_RS00735 SM00052 Putative diguanylate phosphodiesterase RY45_RS00735 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS00735 SM00091 PAS domain RY45_RS00735 SM00267 diguanylate cyclase RY45_RS00760 SM00487 DEAD-like helicases superfamily RY45_RS00760 SM00490 helicase superfamily c-terminal domain RY45_RS00770 SM00357 Cold shock protein domain RY45_RS00770 SM00382 ATPases associated with a variety of cellular activities RY45_RS00770 SM00959 Rho termination factor, N-terminal domain RY45_RS00805 SM00450 Rhodanese Homology Domain RY45_RS00815 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS00820 SM00382 ATPases associated with a variety of cellular activities RY45_RS00825 SM00382 ATPases associated with a variety of cellular activities RY45_RS00845 SM00354 helix_turn _helix lactose operon repressor RY45_RS00860 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS00860 SM00866 RY45_RS00860 RY45_RS00865 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS00865 SM00382 ATPases associated with a variety of cellular activities RY45_RS00870 SM00849 Metallo-beta-lactamase superfamily RY45_RS00925 SM00836 DALR anticodon binding domain RY45_RS00975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS00975 SM00387 Histidine kinase-like ATPases RY45_RS00975 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS00980 SM00448 cheY-homologous receiver domain RY45_RS00980 SM00862 Transcriptional regulatory protein, C terminal RY45_RS01040 SM00881 CoA binding domain RY45_RS01115 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RY45_RS01115 SM01232 RY45_RS01115 RY45_RS01165 SM00354 helix_turn _helix lactose operon repressor RY45_RS01170 SM00829 Enoylreductase RY45_RS01195 SM00563 Phosphate acyltransferases RY45_RS01225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS01225 SM00387 Histidine kinase-like ATPases RY45_RS01225 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS01230 SM00448 cheY-homologous receiver domain RY45_RS01230 SM00862 Transcriptional regulatory protein, C terminal RY45_RS01240 SM00971 Serine acetyltransferase, N-terminal RY45_RS01260 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RY45_RS01260 SM00474 3'-5' exonuclease RY45_RS01260 SM00475 5'-3' exonuclease RY45_RS01260 SM00482 DNA polymerase A domain RY45_RS01305 SM00354 helix_turn _helix lactose operon repressor RY45_RS01310 SM01038 Beta galactosidase small chain RY45_RS01355 SM00829 Enoylreductase RY45_RS01375 SM00382 ATPases associated with a variety of cellular activities RY45_RS01415 SM00326 Src homology 3 domains RY45_RS01475 SM00831 Cation transporter/ATPase, N-terminus RY45_RS01485 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS01505 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS01525 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RY45_RS01525 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RY45_RS01580 SM00257 Lysin motif RY45_RS01600 SM01001 AIR carboxylase RY45_RS01650 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS01660 SM00382 ATPases associated with a variety of cellular activities RY45_RS01660 SM00448 cheY-homologous receiver domain RY45_RS01665 SM00091 PAS domain RY45_RS01665 SM00387 Histidine kinase-like ATPases RY45_RS01665 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS01675 SM01230 RY45_RS01675 RY45_RS01720 SM00487 DEAD-like helicases superfamily RY45_RS01720 SM00490 helicase superfamily c-terminal domain RY45_RS01725 SM00155 Phospholipase D. Active site motifs. RY45_RS01750 SM00354 helix_turn _helix lactose operon repressor RY45_RS01770 SM00450 Rhodanese Homology Domain RY45_RS01815 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS01815 SM00732 Likely ribonuclease with RNase H fold. RY45_RS01825 SM00448 cheY-homologous receiver domain RY45_RS01825 SM00862 Transcriptional regulatory protein, C terminal RY45_RS01830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS01830 SM00387 Histidine kinase-like ATPases RY45_RS01830 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS01840 SM01403 RY45_RS01840 RY45_RS01860 SM01382 RY45_RS01860 RY45_RS01860 SM01383 RY45_RS01860 RY45_RS01875 SM00322 K homology RNA-binding domain RY45_RS01895 SM01374 RY45_RS01895 RY45_RS01955 SM00363 S4 RNA-binding domain RY45_RS01955 SM01390 RY45_RS01955 RY45_RS01960 SM00662 RNA polymerases D RY45_RS02025 SM00822 RY45_RS02025 RY45_RS02110 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS02115 SM00155 Phospholipase D. Active site motifs. RY45_RS02145 SM00382 ATPases associated with a variety of cellular activities RY45_RS02145 SM00962 SRP54-type protein, GTPase domain RY45_RS02145 SM00963 SRP54-type protein, helical bundle domain RY45_RS02150 SM00382 ATPases associated with a variety of cellular activities RY45_RS02165 SM00947 Carbonic anhydrase RY45_RS02170 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS02170 SM00866 RY45_RS02170 RY45_RS02200 SM00052 Putative diguanylate phosphodiesterase RY45_RS02205 SM00052 Putative diguanylate phosphodiesterase RY45_RS02205 SM00267 diguanylate cyclase RY45_RS02235 SM00965 Secretin and TonB N terminus short domain RY45_RS02250 SM00382 ATPases associated with a variety of cellular activities RY45_RS02320 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS02330 SM00886 Stress responsive A/B Barrel Domain RY45_RS02370 SM01126 RY45_RS02370 RY45_RS02395 SM00448 cheY-homologous receiver domain RY45_RS02395 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS02400 SM00387 Histidine kinase-like ATPases RY45_RS02400 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS02400 SM00448 cheY-homologous receiver domain RY45_RS02405 SM00331 Sigma factor PP2C-like phosphatases RY45_RS02405 SM00387 Histidine kinase-like ATPases RY45_RS02415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS02415 SM00091 PAS domain RY45_RS02420 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS02460 SM01018 B12 binding domain RY45_RS02480 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS02485 SM00448 cheY-homologous receiver domain RY45_RS02485 SM00862 Transcriptional regulatory protein, C terminal RY45_RS02500 SM00999 Aerolysin toxin RY45_RS02540 SM00876 Biotin and Thiamin Synthesis associated domain RY45_RS02575 SM00267 diguanylate cyclase RY45_RS02685 SM01219 RY45_RS02685 RY45_RS02720 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_RS02750 SM00382 ATPases associated with a variety of cellular activities RY45_RS02765 SM00852 Probable molybdopterin binding domain RY45_RS02785 SM00344 helix_turn_helix ASNC type RY45_RS02805 SM00642 Alpha-amylase domain RY45_RS02970 SM00849 Metallo-beta-lactamase superfamily RY45_RS03075 SM00862 Transcriptional regulatory protein, C terminal RY45_RS03085 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RY45_RS03135 SM00487 DEAD-like helicases superfamily RY45_RS03135 SM00490 helicase superfamily c-terminal domain RY45_RS03180 SM00271 DnaJ molecular chaperone homology domain RY45_RS03215 SM00357 Cold shock protein domain RY45_RS03215 SM00955 RY45_RS03215 RY45_RS03230 SM00421 helix_turn_helix, Lux Regulon RY45_RS03265 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS03265 SM00895 RY45_RS03265 RY45_RS03280 SM00363 S4 RNA-binding domain RY45_RS03295 SM00382 ATPases associated with a variety of cellular activities RY45_RS03345 SM00421 helix_turn_helix, Lux Regulon RY45_RS03380 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS03410 SM00859 Semialdehyde dehydrogenase, NAD binding domain RY45_RS03455 SM01266 RY45_RS03455 RY45_RS03485 SM00382 ATPases associated with a variety of cellular activities RY45_RS03500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS03500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS03500 SM01049 RY45_RS03500 RY45_RS03530 SM00245 tail specific protease RY45_RS03610 SM00487 DEAD-like helicases superfamily RY45_RS03610 SM00490 helicase superfamily c-terminal domain RY45_RS03630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS03695 SM00938 Nitrogen regulatory protein P-II RY45_RS03710 SM00382 ATPases associated with a variety of cellular activities RY45_RS03725 SM00382 ATPases associated with a variety of cellular activities RY45_RS03730 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS03730 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RY45_RS03755 SM00671 Sel1-like repeats. RY45_RS03770 SM01091 Transporter associated domain RY45_RS03780 SM00382 ATPases associated with a variety of cellular activities RY45_RS03780 SM00962 SRP54-type protein, GTPase domain RY45_RS03780 SM00963 SRP54-type protein, helical bundle domain RY45_RS03810 SM00927 DNA mismatch repair enzyme MutH RY45_RS03825 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS03855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_RS03870 SM00904 Riboflavin kinase RY45_RS03955 SM00938 Nitrogen regulatory protein P-II RY45_RS03970 SM00267 diguanylate cyclase RY45_RS03975 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS03975 SM00357 Cold shock protein domain RY45_RS03975 SM00955 RY45_RS03975 RY45_RS03985 SM00967 RNA 2'-O ribose methyltransferase substrate binding RY45_RS04050 SM00829 Enoylreductase RY45_RS04095 SM00382 ATPases associated with a variety of cellular activities RY45_RS04100 SM00327 von Willebrand factor (vWF) type A domain RY45_RS04105 SM00028 Tetratricopeptide repeats RY45_RS04105 SM00267 diguanylate cyclase RY45_RS04120 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_RS04175 SM00849 Metallo-beta-lactamase superfamily RY45_RS04190 SM00487 DEAD-like helicases superfamily RY45_RS04190 SM00490 helicase superfamily c-terminal domain RY45_RS04295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS04295 SM00387 Histidine kinase-like ATPases RY45_RS04295 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS04300 SM00448 cheY-homologous receiver domain RY45_RS04300 SM00862 Transcriptional regulatory protein, C terminal RY45_RS04310 SM00382 ATPases associated with a variety of cellular activities RY45_RS04315 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS04320 SM00382 ATPases associated with a variety of cellular activities RY45_RS04360 SM00822 RY45_RS04360 RY45_RS04375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS04375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS04385 SM00287 Bacterial SH3 domain homologues RY45_RS04410 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_RS04510 SM00358 Double-stranded RNA binding motif RY45_RS04510 SM00535 Ribonuclease III family RY45_RS04575 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_RS04575 SM01134 RY45_RS04575 RY45_RS04580 SM00644 RY45_RS04580 RY45_RS04590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS04590 SM00387 Histidine kinase-like ATPases RY45_RS04590 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS04590 SM00448 cheY-homologous receiver domain RY45_RS04600 SM00954 Region found in RelA / SpoT proteins RY45_RS04615 SM01192 RY45_RS04615 RY45_RS04615 SM01193 RY45_RS04615 RY45_RS04655 SM00257 Lysin motif RY45_RS04675 SM00400 zinc finger RY45_RS04675 SM00493 RY45_RS04675 RY45_RS04675 SM00766 DNA primase DnaG DnaB-binding RY45_RS04695 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RY45_RS04695 SM00632 RY45_RS04695 RY45_RS04695 SM00642 Alpha-amylase domain RY45_RS04710 SM01209 RY45_RS04710 RY45_RS04710 SM01210 RY45_RS04710 RY45_RS04715 SM00798 AICARFT/IMPCHase bienzyme RY45_RS04715 SM00851 MGS-like domain RY45_RS04720 SM00422 helix_turn_helix, mercury resistance RY45_RS04735 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS04810 SM00883 Chaperonin 10 Kd subunit RY45_RS04825 SM00052 Putative diguanylate phosphodiesterase RY45_RS04825 SM00267 diguanylate cyclase RY45_RS04835 SM00487 DEAD-like helicases superfamily RY45_RS04835 SM00490 helicase superfamily c-terminal domain RY45_RS04880 SM00670 Large family of predicted nucleotide-binding domains RY45_RS04885 SM00382 ATPases associated with a variety of cellular activities RY45_RS04920 SM01329 RY45_RS04920 RY45_RS04925 SM00917 LeuA allosteric (dimerisation) domain RY45_RS04935 SM00014 Acid phosphatase homologues RY45_RS04985 SM01130 RY45_RS04985 RY45_RS05030 SM00073 Histidine Phosphotransfer domain RY45_RS05030 SM00091 PAS domain RY45_RS05030 SM00387 Histidine kinase-like ATPases RY45_RS05030 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS05030 SM00448 cheY-homologous receiver domain RY45_RS05035 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS05045 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS05045 SM00073 Histidine Phosphotransfer domain RY45_RS05045 SM00091 PAS domain RY45_RS05045 SM00387 Histidine kinase-like ATPases RY45_RS05045 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS05045 SM00448 cheY-homologous receiver domain RY45_RS05050 SM00052 Putative diguanylate phosphodiesterase RY45_RS05050 SM00448 cheY-homologous receiver domain RY45_RS05055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS05055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS05060 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RY45_RS05075 SM00382 ATPases associated with a variety of cellular activities RY45_RS05075 SM00930 RY45_RS05075 RY45_RS05110 SM00257 Lysin motif RY45_RS05110 SM00646 RY45_RS05110 RY45_RS05115 SM00853 MutL C terminal dimerisation domain RY45_RS05115 SM01340 RY45_RS05115 RY45_RS05135 SM00244 prohibitin homologues RY45_RS05140 SM00244 prohibitin homologues RY45_RS05190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS05200 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS05220 SM00650 Ribosomal RNA adenine dimethylases RY45_RS05250 SM00271 DnaJ molecular chaperone homology domain RY45_RS05265 SM00382 ATPases associated with a variety of cellular activities RY45_RS05315 SM01133 RY45_RS05315 RY45_RS05335 SM00382 ATPases associated with a variety of cellular activities RY45_RS05385 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS05395 SM00387 Histidine kinase-like ATPases RY45_RS05395 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS05395 SM00448 cheY-homologous receiver domain RY45_RS05400 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RY45_RS05400 SM00495 Chitin-binding domain type 3 RY45_RS05400 SM00636 RY45_RS05400 RY45_RS05410 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RY45_RS05410 SM00495 Chitin-binding domain type 3 RY45_RS05420 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_RS05420 SM00419 helix_turn_helix, cAMP Regulatory protein RY45_RS05480 SM00984 UDP binding domain RY45_RS05490 SM00267 diguanylate cyclase RY45_RS05500 SM00260 Two component signalling adaptor domain RY45_RS05500 SM00448 cheY-homologous receiver domain RY45_RS05525 SM00320 WD40 repeats RY45_RS05535 SM00382 ATPases associated with a variety of cellular activities RY45_RS05535 SM00448 cheY-homologous receiver domain RY45_RS05560 SM00052 Putative diguanylate phosphodiesterase RY45_RS05565 SM00978 RY45_RS05565 RY45_RS05570 SM00382 ATPases associated with a variety of cellular activities RY45_RS05575 SM01005 Alanine racemase, C-terminal domain RY45_RS05590 SM00052 Putative diguanylate phosphodiesterase RY45_RS05610 SM00421 helix_turn_helix, Lux Regulon RY45_RS05610 SM00448 cheY-homologous receiver domain RY45_RS05615 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS05615 SM00387 Histidine kinase-like ATPases RY45_RS05615 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS05615 SM00448 cheY-homologous receiver domain RY45_RS05645 SM00448 cheY-homologous receiver domain RY45_RS05655 SM00138 Methyltransferase, chemotaxis proteins RY45_RS05660 SM00091 PAS domain RY45_RS05660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS05660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS05665 SM00260 Two component signalling adaptor domain RY45_RS05670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS05670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS05675 SM00073 Histidine Phosphotransfer domain RY45_RS05675 SM00260 Two component signalling adaptor domain RY45_RS05675 SM00387 Histidine kinase-like ATPases RY45_RS05675 SM01231 RY45_RS05675 RY45_RS05685 SM00448 cheY-homologous receiver domain RY45_RS05690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS05735 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS05735 SM00478 endonuclease III RY45_RS05735 SM01009 AlkA N-terminal domain RY45_RS05750 SM00463 Small MutS-related domain RY45_RS05775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS05775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS05785 SM01007 Class II Aldolase and Adducin N-terminal domain RY45_RS05845 SM00830 Chorismate mutase type II RY45_RS05880 SM00422 helix_turn_helix, mercury resistance RY45_RS05970 SM00912 haemagglutination activity domain RY45_RS06015 SM00421 helix_turn_helix, Lux Regulon RY45_RS06125 SM00900 RY45_RS06125 RY45_RS06165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS06165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS06195 SM01329 RY45_RS06195 RY45_RS06200 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RY45_RS06200 SM00475 5'-3' exonuclease RY45_RS06210 SM00267 diguanylate cyclase RY45_RS06215 SM00028 Tetratricopeptide repeats RY45_RS06295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS06340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_RS06350 SM00935 Outer membrane protein (OmpH-like) RY45_RS06380 SM00481 DNA polymerase alpha chain like domain RY45_RS06390 SM00862 Transcriptional regulatory protein, C terminal RY45_RS06425 SM00849 Metallo-beta-lactamase superfamily RY45_RS06460 SM00382 ATPases associated with a variety of cellular activities RY45_RS06475 SM00977 TilS substrate C-terminal domain RY45_RS06480 SM00267 diguanylate cyclase RY45_RS06505 SM00421 helix_turn_helix, Lux Regulon RY45_RS06505 SM00448 cheY-homologous receiver domain RY45_RS06515 SM00642 Alpha-amylase domain RY45_RS06540 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS06575 SM00771 ZipA, C-terminal domain (FtsZ-binding) RY45_RS06580 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_RS06580 SM00292 breast cancer carboxy-terminal domain RY45_RS06580 SM00532 Ligase N family RY45_RS06615 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS06630 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_RS06640 SM00919 Malic enzyme, NAD binding domain RY45_RS06640 SM01274 RY45_RS06640 RY45_RS06645 SM00387 Histidine kinase-like ATPases RY45_RS06650 SM00448 cheY-homologous receiver domain RY45_RS06660 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS06670 SM00382 ATPases associated with a variety of cellular activities RY45_RS06690 SM00448 cheY-homologous receiver domain RY45_RS06690 SM00862 Transcriptional regulatory protein, C terminal RY45_RS06695 SM00387 Histidine kinase-like ATPases RY45_RS06695 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS06735 SM00382 ATPases associated with a variety of cellular activities RY45_RS06750 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS06765 SM00382 ATPases associated with a variety of cellular activities RY45_RS06810 SM00912 haemagglutination activity domain RY45_RS06835 SM00267 diguanylate cyclase RY45_RS06850 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS06855 SM00919 Malic enzyme, NAD binding domain RY45_RS06855 SM01274 RY45_RS06855 RY45_RS06880 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS06895 SM00267 diguanylate cyclase RY45_RS06915 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS06960 SM00642 Alpha-amylase domain RY45_RS06980 SM00155 Phospholipase D. Active site motifs. RY45_RS07100 SM00327 von Willebrand factor (vWF) type A domain RY45_RS07105 SM00382 ATPases associated with a variety of cellular activities RY45_RS07135 SM00481 DNA polymerase alpha chain like domain RY45_RS07175 SM00387 Histidine kinase-like ATPases RY45_RS07180 SM00448 cheY-homologous receiver domain RY45_RS07180 SM00862 Transcriptional regulatory protein, C terminal RY45_RS07185 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS07190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS07220 SM00382 ATPases associated with a variety of cellular activities RY45_RS07280 SM00382 ATPases associated with a variety of cellular activities RY45_RS07280 SM00962 SRP54-type protein, GTPase domain RY45_RS07295 SM00448 cheY-homologous receiver domain RY45_RS07305 SM00073 Histidine Phosphotransfer domain RY45_RS07305 SM00260 Two component signalling adaptor domain RY45_RS07305 SM00387 Histidine kinase-like ATPases RY45_RS07305 SM01231 RY45_RS07305 RY45_RS07310 SM00448 cheY-homologous receiver domain RY45_RS07330 SM00260 Two component signalling adaptor domain RY45_RS07335 SM00260 Two component signalling adaptor domain RY45_RS07345 SM00382 ATPases associated with a variety of cellular activities RY45_RS07450 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. RY45_RS07530 SM00422 helix_turn_helix, mercury resistance RY45_RS07540 SM00354 helix_turn _helix lactose operon repressor RY45_RS07580 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS07585 SM01329 RY45_RS07585 RY45_RS07625 SM00487 DEAD-like helicases superfamily RY45_RS07625 SM00490 helicase superfamily c-terminal domain RY45_RS08030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS08030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS08055 SM01091 Transporter associated domain RY45_RS08115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS08125 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS08125 SM00876 Biotin and Thiamin Synthesis associated domain RY45_RS08150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS08165 SM00890 Domain of unknown function RY45_RS08240 SM00458 Ricin-type beta-trefoil RY45_RS08320 SM01081 Putative carbohydrate binding domain RY45_RS08375 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_RS08400 SM00382 ATPases associated with a variety of cellular activities RY45_RS08475 SM00052 Putative diguanylate phosphodiesterase RY45_RS08475 SM00267 diguanylate cyclase RY45_RS08485 SM00354 helix_turn _helix lactose operon repressor RY45_RS08510 SM00257 Lysin motif RY45_RS08515 SM00849 Metallo-beta-lactamase superfamily RY45_RS08530 SM00479 RY45_RS08530 RY45_RS08560 SM00382 ATPases associated with a variety of cellular activities RY45_RS08565 SM00091 PAS domain RY45_RS08565 SM00387 Histidine kinase-like ATPases RY45_RS08565 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS08570 SM00382 ATPases associated with a variety of cellular activities RY45_RS08570 SM00448 cheY-homologous receiver domain RY45_RS08635 SM00382 ATPases associated with a variety of cellular activities RY45_RS08660 SM01091 Transporter associated domain RY45_RS08690 SM00382 ATPases associated with a variety of cellular activities RY45_RS08700 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS08700 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RY45_RS08705 SM00267 diguanylate cyclase RY45_RS08715 SM00387 Histidine kinase-like ATPases RY45_RS08720 SM00421 helix_turn_helix, Lux Regulon RY45_RS08720 SM00448 cheY-homologous receiver domain RY45_RS08745 SM00098 Alkaline phosphatase homologues RY45_RS08750 SM00098 Alkaline phosphatase homologues RY45_RS08775 SM00491 RY45_RS08775 RY45_RS08800 SM00852 Probable molybdopterin binding domain RY45_RS08810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS08810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS08830 SM00867 YceI-like domain RY45_RS08840 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RY45_RS08850 SM00563 Phosphate acyltransferases RY45_RS08880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS08880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS08905 SM00855 Phosphoglycerate mutase family RY45_RS08910 SM00507 HNH nucleases RY45_RS08930 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RY45_RS08935 SM00363 S4 RNA-binding domain RY45_RS08960 SM00871 Bacterial transcription activator, effector binding domain RY45_RS08985 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS09050 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_RS09050 SM01134 RY45_RS09050 RY45_RS09065 SM01126 RY45_RS09065 RY45_RS09075 SM00830 Chorismate mutase type II RY45_RS09150 SM00382 ATPases associated with a variety of cellular activities RY45_RS09220 SM00382 ATPases associated with a variety of cellular activities RY45_RS09225 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS09225 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RY45_RS09250 SM00052 Putative diguanylate phosphodiesterase RY45_RS09250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS09250 SM00091 PAS domain RY45_RS09250 SM00267 diguanylate cyclase RY45_RS09255 SM00450 Rhodanese Homology Domain RY45_RS09260 SM01359 RY45_RS09260 RY45_RS09260 SM01360 RY45_RS09260 RY45_RS09275 SM00981 RY45_RS09275 RY45_RS09350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS09350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS09415 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_RS09420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_RS09430 SM00382 ATPases associated with a variety of cellular activities RY45_RS09470 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS09485 SM01323 RY45_RS09485 RY45_RS09500 SM00450 Rhodanese Homology Domain RY45_RS09505 SM00028 Tetratricopeptide repeats RY45_RS09555 SM00271 DnaJ molecular chaperone homology domain RY45_RS09580 SM00562 RY45_RS09580 RY45_RS09590 SM00028 Tetratricopeptide repeats RY45_RS09595 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS09615 SM00564 beta-propeller repeat RY45_RS09630 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS09635 SM01211 RY45_RS09635 RY45_RS09640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS09645 SM00091 PAS domain RY45_RS09645 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS09650 SM00897 FIST N domain RY45_RS09650 SM01204 RY45_RS09650 RY45_RS09690 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS09690 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RY45_RS09695 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RY45_RS09760 SM00360 RNA recognition motif RY45_RS09785 SM00091 PAS domain RY45_RS09790 SM00448 cheY-homologous receiver domain RY45_RS09805 SM00052 Putative diguanylate phosphodiesterase RY45_RS09805 SM00267 diguanylate cyclase RY45_RS09850 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS09855 SM00411 bacterial (prokaryotic) histone like domain RY45_RS09865 SM00028 Tetratricopeptide repeats RY45_RS09870 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RY45_RS09880 SM01144 RY45_RS09880 RY45_RS09905 SM00528 Domain in histone-like proteins of HNS family RY45_RS09920 SM01154 RY45_RS09920 RY45_RS09950 SM01126 RY45_RS09950 RY45_RS09985 SM00357 Cold shock protein domain RY45_RS09995 SM00382 ATPases associated with a variety of cellular activities RY45_RS09995 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_RS10000 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS10020 SM00267 diguanylate cyclase RY45_RS10020 SM00448 cheY-homologous receiver domain RY45_RS10030 SM00344 helix_turn_helix ASNC type RY45_RS10035 SM00843 RY45_RS10035 RY45_RS10045 SM00382 ATPases associated with a variety of cellular activities RY45_RS10075 SM00382 ATPases associated with a variety of cellular activities RY45_RS10080 SM00382 ATPases associated with a variety of cellular activities RY45_RS10100 SM00382 ATPases associated with a variety of cellular activities RY45_RS10140 SM00091 PAS domain RY45_RS10140 SM00382 ATPases associated with a variety of cellular activities RY45_RS10150 SM00267 diguanylate cyclase RY45_RS10150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS10215 SM01007 Class II Aldolase and Adducin N-terminal domain RY45_RS10230 SM00382 ATPases associated with a variety of cellular activities RY45_RS10240 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS10305 SM00825 Beta-ketoacyl synthase RY45_RS10345 SM00861 Transketolase, pyrimidine binding domain RY45_RS10360 SM00881 CoA binding domain RY45_RS10385 SM00382 ATPases associated with a variety of cellular activities RY45_RS10395 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS10395 SM00866 RY45_RS10395 RY45_RS10435 SM00859 Semialdehyde dehydrogenase, NAD binding domain RY45_RS10465 SM00822 RY45_RS10465 RY45_RS10470 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS10470 SM00871 Bacterial transcription activator, effector binding domain RY45_RS10500 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS10600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS10600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS10600 SM01049 RY45_RS10600 RY45_RS10610 SM00387 Histidine kinase-like ATPases RY45_RS10615 SM00448 cheY-homologous receiver domain RY45_RS10635 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS10650 SM00487 DEAD-like helicases superfamily RY45_RS10650 SM00490 helicase superfamily c-terminal domain RY45_RS10675 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS10690 SM00763 PrkA AAA domain RY45_RS10695 SM00487 DEAD-like helicases superfamily RY45_RS10695 SM00490 helicase superfamily c-terminal domain RY45_RS10755 SM00387 Histidine kinase-like ATPases RY45_RS10755 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS10755 SM00448 cheY-homologous receiver domain RY45_RS10760 SM00382 ATPases associated with a variety of cellular activities RY45_RS10765 SM00382 ATPases associated with a variety of cellular activities RY45_RS10830 SM01118 RY45_RS10830 RY45_RS10855 SM00487 DEAD-like helicases superfamily RY45_RS10855 SM00490 helicase superfamily c-terminal domain RY45_RS10865 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. RY45_RS10880 SM01144 RY45_RS10880 RY45_RS10900 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS10915 SM00642 Alpha-amylase domain RY45_RS11050 SM00782 PhnA Zinc-Ribbon RY45_RS11060 SM00495 Chitin-binding domain type 3 RY45_RS11075 SM00855 Phosphoglycerate mutase family RY45_RS11080 SM00091 PAS domain RY45_RS11080 SM00267 diguanylate cyclase RY45_RS11090 SM00463 Small MutS-related domain RY45_RS11105 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS11110 SM00487 DEAD-like helicases superfamily RY45_RS11110 SM00490 helicase superfamily c-terminal domain RY45_RS11115 SM00953 RY45_RS11115 RY45_RS11130 SM00354 helix_turn _helix lactose operon repressor RY45_RS11155 SM00354 helix_turn _helix lactose operon repressor RY45_RS11195 SM00925 MltA specific insert domain RY45_RS11225 SM00434 DNA Topoisomerase IV RY45_RS11235 SM00671 Sel1-like repeats. RY45_RS11240 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RY45_RS11265 SM00873 B3/4 domain RY45_RS11265 SM00874 tRNA synthetase B5 domain RY45_RS11265 SM00896 Ferredoxin-fold anticodon binding domain RY45_RS11270 SM00411 bacterial (prokaryotic) histone like domain RY45_RS11300 SM00267 diguanylate cyclase RY45_RS11305 SM00354 helix_turn _helix lactose operon repressor RY45_RS11325 SM00382 ATPases associated with a variety of cellular activities RY45_RS11360 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_RS11360 SM00419 helix_turn_helix, cAMP Regulatory protein RY45_RS11415 SM00945 ProQ/FINO family RY45_RS11420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_RS11420 SM00245 tail specific protease RY45_RS11450 SM00981 RY45_RS11450 RY45_RS11460 SM00382 ATPases associated with a variety of cellular activities RY45_RS11495 SM00822 RY45_RS11495 RY45_RS11585 SM00382 ATPases associated with a variety of cellular activities RY45_RS11605 SM00825 Beta-ketoacyl synthase RY45_RS11615 SM00822 RY45_RS11615 RY45_RS11620 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RY45_RS11670 SM00363 S4 RNA-binding domain RY45_RS11675 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS11715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS11720 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RY45_RS11745 SM00450 Rhodanese Homology Domain RY45_RS11750 SM00849 Metallo-beta-lactamase superfamily RY45_RS11755 SM00448 cheY-homologous receiver domain RY45_RS11755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS11760 SM00387 Histidine kinase-like ATPases RY45_RS11760 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS11760 SM00448 cheY-homologous receiver domain RY45_RS11775 SM00382 ATPases associated with a variety of cellular activities RY45_RS11775 SM00487 DEAD-like helicases superfamily RY45_RS11775 SM00490 helicase superfamily c-terminal domain RY45_RS11775 SM00847 Helicase associated domain (HA2) Add an annotation RY45_RS11780 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS11785 SM00421 helix_turn_helix, Lux Regulon RY45_RS11800 SM00382 ATPases associated with a variety of cellular activities RY45_RS11825 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS11830 SM00341 Helicase and RNase D C-terminal RY45_RS11830 SM00474 3'-5' exonuclease RY45_RS11855 SM00491 RY45_RS11855 RY45_RS11895 SM00448 cheY-homologous receiver domain RY45_RS11895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS11900 SM00091 PAS domain RY45_RS11905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS11905 SM00091 PAS domain RY45_RS11905 SM00387 Histidine kinase-like ATPases RY45_RS11905 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS11905 SM00448 cheY-homologous receiver domain RY45_RS11950 SM00237 Domains in Na-Ca exchangers and integrin-beta4 RY45_RS11960 SM01092 CO dehydrogenase flavoprotein C-terminal domain RY45_RS11965 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_RS11985 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RY45_RS11990 SM01092 CO dehydrogenase flavoprotein C-terminal domain RY45_RS12050 SM00382 ATPases associated with a variety of cellular activities RY45_RS12065 SM01322 RY45_RS12065 RY45_RS12095 SM00327 von Willebrand factor (vWF) type A domain RY45_RS12100 SM00028 Tetratricopeptide repeats RY45_RS12130 SM00052 Putative diguanylate phosphodiesterase RY45_RS12140 SM00422 helix_turn_helix, mercury resistance RY45_RS12220 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_RS12300 SM00486 DNA polymerase type-B family RY45_RS12310 SM00267 diguanylate cyclase RY45_RS12320 SM00090 RIO-like kinase RY45_RS12350 SM00518 AP endonuclease family 2 RY45_RS12360 SM00822 RY45_RS12360 RY45_RS12365 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS12375 SM00052 Putative diguanylate phosphodiesterase RY45_RS12375 SM00267 diguanylate cyclase RY45_RS12395 SM00857 Resolvase, N terminal domain RY45_RS12410 SM00487 DEAD-like helicases superfamily RY45_RS12430 SM00885 D5 N terminal like RY45_RS12465 SM00822 RY45_RS12465 RY45_RS12510 SM00878 Biotin carboxylase C-terminal domain RY45_RS12520 SM00422 helix_turn_helix, mercury resistance RY45_RS12580 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_RS12580 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS12585 SM00479 RY45_RS12585 RY45_RS12600 SM00382 ATPases associated with a variety of cellular activities RY45_RS12615 SM00382 ATPases associated with a variety of cellular activities RY45_RS12615 SM00464 Found in ATP-dependent protease La (LON) RY45_RS12620 SM00382 ATPases associated with a variety of cellular activities RY45_RS12620 SM00994 ClpX C4-type zinc finger RY45_RS12620 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_RS12640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS12650 SM00382 ATPases associated with a variety of cellular activities RY45_RS12665 SM00487 DEAD-like helicases superfamily RY45_RS12665 SM00490 helicase superfamily c-terminal domain RY45_RS12665 SM00982 RY45_RS12665 RY45_RS12665 SM01058 CarD-like/TRCF domain RY45_RS12690 SM00855 Phosphoglycerate mutase family RY45_RS12705 SM00364 Leucine-rich repeats, bacterial type RY45_RS12705 SM00369 Leucine-rich repeats, typical (most populated) subfamily RY45_RS12715 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS12735 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS12735 SM01240 RY45_RS12735 RY45_RS12770 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS12775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS12775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS12795 SM00893 Electron transfer flavoprotein domain RY45_RS12800 SM00893 Electron transfer flavoprotein domain RY45_RS12845 SM00382 ATPases associated with a variety of cellular activities RY45_RS12865 SM00823 Phosphopantetheine attachment site RY45_RS12870 SM00822 RY45_RS12870 RY45_RS12875 SM00823 Phosphopantetheine attachment site RY45_RS12910 SM00052 Putative diguanylate phosphodiesterase RY45_RS12910 SM00267 diguanylate cyclase RY45_RS12945 SM00387 Histidine kinase-like ATPases RY45_RS12950 SM00493 RY45_RS12950 RY45_RS12960 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS12960 SM00382 ATPases associated with a variety of cellular activities RY45_RS12975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS13070 SM00382 ATPases associated with a variety of cellular activities RY45_RS13075 SM00382 ATPases associated with a variety of cellular activities RY45_RS13125 SM00448 cheY-homologous receiver domain RY45_RS13135 SM00073 Histidine Phosphotransfer domain RY45_RS13135 SM00260 Two component signalling adaptor domain RY45_RS13135 SM00387 Histidine kinase-like ATPases RY45_RS13135 SM01231 RY45_RS13135 RY45_RS13140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS13145 SM00260 Two component signalling adaptor domain RY45_RS13150 SM00138 Methyltransferase, chemotaxis proteins RY45_RS13155 SM00448 cheY-homologous receiver domain RY45_RS13160 SM00052 Putative diguanylate phosphodiesterase RY45_RS13160 SM00448 cheY-homologous receiver domain RY45_RS13165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS13165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS13170 SM01005 Alanine racemase, C-terminal domain RY45_RS13175 SM00873 B3/4 domain RY45_RS13180 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS13250 SM00382 ATPases associated with a variety of cellular activities RY45_RS13505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS13505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS13540 SM01005 Alanine racemase, C-terminal domain RY45_RS13550 SM00382 ATPases associated with a variety of cellular activities RY45_RS13555 SM00382 ATPases associated with a variety of cellular activities RY45_RS13590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS13595 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS13600 SM00448 cheY-homologous receiver domain RY45_RS13600 SM00850 LytTr DNA-binding domain RY45_RS13620 SM00487 DEAD-like helicases superfamily RY45_RS13620 SM00490 helicase superfamily c-terminal domain RY45_RS13655 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS13655 SM00091 PAS domain RY45_RS13655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS13690 SM00900 RY45_RS13690 RY45_RS13700 SM00478 endonuclease III RY45_RS13700 SM00525 RY45_RS13700 RY45_RS13715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS13720 SM00479 RY45_RS13720 RY45_RS13730 SM00487 DEAD-like helicases superfamily RY45_RS13730 SM00490 helicase superfamily c-terminal domain RY45_RS13755 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS13755 SM01091 Transporter associated domain RY45_RS13830 SM00267 diguanylate cyclase RY45_RS13835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS13925 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS14005 SM00382 ATPases associated with a variety of cellular activities RY45_RS14095 SM00859 Semialdehyde dehydrogenase, NAD binding domain RY45_RS14105 SM00014 Acid phosphatase homologues RY45_RS14145 SM01217 RY45_RS14145 RY45_RS14150 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS14195 SM00052 Putative diguanylate phosphodiesterase RY45_RS14195 SM00267 diguanylate cyclase RY45_RS14215 SM00382 ATPases associated with a variety of cellular activities RY45_RS14220 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS14240 SM00382 ATPases associated with a variety of cellular activities RY45_RS14250 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS14265 SM00422 helix_turn_helix, mercury resistance RY45_RS14280 SM01351 RY45_RS14280 RY45_RS14290 SM00487 DEAD-like helicases superfamily RY45_RS14290 SM00490 helicase superfamily c-terminal domain RY45_RS14305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS14330 SM00917 LeuA allosteric (dimerisation) domain RY45_RS14335 SM00851 MGS-like domain RY45_RS14335 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RY45_RS14340 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RY45_RS14390 SM00382 ATPases associated with a variety of cellular activities RY45_RS14400 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS14410 SM00382 ATPases associated with a variety of cellular activities RY45_RS14435 SM00899 RY45_RS14435 RY45_RS14465 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS14470 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS14475 SM00267 diguanylate cyclase RY45_RS14495 SM00840 RY45_RS14495 RY45_RS14550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS14555 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS14555 SM00091 PAS domain RY45_RS14555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS14580 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_RS14580 SM00465 GIY-YIG type nucleases (URI domain) RY45_RS14585 SM00421 helix_turn_helix, Lux Regulon RY45_RS14585 SM00448 cheY-homologous receiver domain RY45_RS14605 SM00382 ATPases associated with a variety of cellular activities RY45_RS14610 SM00849 Metallo-beta-lactamase superfamily RY45_RS14655 SM00382 ATPases associated with a variety of cellular activities RY45_RS14685 SM00852 Probable molybdopterin binding domain RY45_RS14710 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS14725 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS14730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS14730 SM00387 Histidine kinase-like ATPases RY45_RS14735 SM00421 helix_turn_helix, Lux Regulon RY45_RS14735 SM00448 cheY-homologous receiver domain RY45_RS14740 SM00464 Found in ATP-dependent protease La (LON) RY45_RS14745 SM00387 Histidine kinase-like ATPases RY45_RS14745 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS14745 SM00448 cheY-homologous receiver domain RY45_RS14750 SM00897 FIST N domain RY45_RS14750 SM01204 RY45_RS14750 RY45_RS14760 SM00073 Histidine Phosphotransfer domain RY45_RS14780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS14785 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS14785 SM00924 MgtE intracellular N domain RY45_RS14800 SM00047 Lysozyme subfamily 2 RY45_RS14845 SM00138 Methyltransferase, chemotaxis proteins RY45_RS14850 SM00260 Two component signalling adaptor domain RY45_RS14850 SM00448 cheY-homologous receiver domain RY45_RS14855 SM00858 RY45_RS14855 RY45_RS14885 SM00363 S4 RNA-binding domain RY45_RS14890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS14915 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_RS14915 SM01134 RY45_RS14915 RY45_RS14950 SM00357 Cold shock protein domain RY45_RS14960 SM00861 Transketolase, pyrimidine binding domain RY45_RS14985 SM00487 DEAD-like helicases superfamily RY45_RS14985 SM00490 helicase superfamily c-terminal domain RY45_RS15055 SM00984 UDP binding domain RY45_RS15105 SM00363 S4 RNA-binding domain RY45_RS15125 SM00481 DNA polymerase alpha chain like domain RY45_RS15175 SM00247 Beta/gamma crystallins RY45_RS15285 SM00028 Tetratricopeptide repeats RY45_RS15285 SM00448 cheY-homologous receiver domain RY45_RS15345 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS15345 SM00091 PAS domain RY45_RS15345 SM00267 diguanylate cyclase RY45_RS15370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RY45_RS15390 SM00271 DnaJ molecular chaperone homology domain RY45_RS15415 SM01131 RY45_RS15415 RY45_RS15430 SM00382 ATPases associated with a variety of cellular activities RY45_RS15455 SM00528 Domain in histone-like proteins of HNS family RY45_RS15490 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS15540 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS15540 SM00387 Histidine kinase-like ATPases RY45_RS15540 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS15540 SM00448 cheY-homologous receiver domain RY45_RS15540 SM00918 Ligated ion channel L-glutamate- and glycine-binding site RY45_RS15580 SM00382 ATPases associated with a variety of cellular activities RY45_RS15635 SM00448 cheY-homologous receiver domain RY45_RS15635 SM00862 Transcriptional regulatory protein, C terminal RY45_RS15650 SM00382 ATPases associated with a variety of cellular activities RY45_RS15655 SM00382 ATPases associated with a variety of cellular activities RY45_RS15690 SM00382 ATPases associated with a variety of cellular activities RY45_RS15715 SM00267 diguanylate cyclase RY45_RS15815 SM00919 Malic enzyme, NAD binding domain RY45_RS15815 SM01274 RY45_RS15815 RY45_RS15820 SM00387 Histidine kinase-like ATPases RY45_RS15820 SM00448 cheY-homologous receiver domain RY45_RS15835 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS15875 SM00387 Histidine kinase-like ATPases RY45_RS15875 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS15880 SM00382 ATPases associated with a variety of cellular activities RY45_RS15880 SM00448 cheY-homologous receiver domain RY45_RS15895 SM00382 ATPases associated with a variety of cellular activities RY45_RS15905 SM00852 Probable molybdopterin binding domain RY45_RS15915 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS15925 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS15925 SM00091 PAS domain RY45_RS15925 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS15975 SM00091 PAS domain RY45_RS15975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS15975 SM00387 Histidine kinase-like ATPases RY45_RS15975 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS15975 SM00448 cheY-homologous receiver domain RY45_RS15995 SM00382 ATPases associated with a variety of cellular activities RY45_RS16000 SM00382 ATPases associated with a variety of cellular activities RY45_RS16020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS16030 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RY45_RS16030 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RY45_RS16030 SM00493 RY45_RS16030 RY45_RS16075 SM00788 Adenylosuccinate synthetase RY45_RS16085 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS16095 SM00363 S4 RNA-binding domain RY45_RS16125 SM00861 Transketolase, pyrimidine binding domain RY45_RS16135 SM00731 SprT homologues. RY45_RS16155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS16165 SM00732 Likely ribonuclease with RNase H fold. RY45_RS16205 SM00460 Transglutaminase/protease-like homologues RY45_RS16230 SM00986 Uracil DNA glycosylase superfamily RY45_RS16230 SM00987 UreE urease accessory protein, C-terminal domain RY45_RS16265 SM00937 RY45_RS16265 RY45_RS16290 SM01400 RY45_RS16290 RY45_RS16365 SM00100 Cyclic nucleotide-monophosphate binding domain RY45_RS16370 SM01022 RY45_RS16370 RY45_RS16380 SM00642 Alpha-amylase domain RY45_RS16390 SM00890 Domain of unknown function RY45_RS16405 SM01126 RY45_RS16405 RY45_RS16410 SM01150 RY45_RS16410 RY45_RS16475 SM00965 Secretin and TonB N terminus short domain RY45_RS16495 SM00842 Cell division protein FtsA RY45_RS16510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS16510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS16520 SM00849 Metallo-beta-lactamase superfamily RY45_RS16560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS16560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS16620 SM01236 RY45_RS16620 RY45_RS16625 SM00822 RY45_RS16625 RY45_RS16635 SM00448 cheY-homologous receiver domain RY45_RS16635 SM00862 Transcriptional regulatory protein, C terminal RY45_RS16640 SM00387 Histidine kinase-like ATPases RY45_RS16640 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS16650 SM01240 RY45_RS16650 RY45_RS16660 SM00841 Elongation factor P, C-terminal RY45_RS16660 SM01185 RY45_RS16660 RY45_RS16685 SM00267 diguanylate cyclase RY45_RS16710 SM00267 diguanylate cyclase RY45_RS16715 SM00357 Cold shock protein domain RY45_RS16730 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS16745 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS16745 SM01091 Transporter associated domain RY45_RS16815 SM00936 Penicillin-binding protein 5, C-terminal domain RY45_RS16830 SM00729 Elongator protein 3, MiaB family, Radical SAM RY45_RS16845 SM00382 ATPases associated with a variety of cellular activities RY45_RS16885 SM00422 helix_turn_helix, mercury resistance RY45_RS16960 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS16975 SM00387 Histidine kinase-like ATPases RY45_RS16975 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS16980 SM00421 helix_turn_helix, Lux Regulon RY45_RS16980 SM00448 cheY-homologous receiver domain RY45_RS16985 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS16990 SM00448 cheY-homologous receiver domain RY45_RS16990 SM00850 LytTr DNA-binding domain RY45_RS17020 SM00267 diguanylate cyclase RY45_RS17030 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS17030 SM00322 K homology RNA-binding domain RY45_RS17035 SM01387 RY45_RS17035 RY45_RS17055 SM00316 Ribosomal protein S1-like RNA-binding domain RY45_RS17095 SM00382 ATPases associated with a variety of cellular activities RY45_RS17105 SM01103 RY45_RS17105 RY45_RS17140 SM00861 Transketolase, pyrimidine binding domain RY45_RS17160 SM00382 ATPases associated with a variety of cellular activities RY45_RS17185 SM00020 Trypsin-like serine protease RY45_RS17250 SM00052 Putative diguanylate phosphodiesterase RY45_RS17250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS17250 SM00091 PAS domain RY45_RS17250 SM00267 diguanylate cyclase RY45_RS17275 SM00878 Biotin carboxylase C-terminal domain RY45_RS17300 SM00829 Enoylreductase RY45_RS17315 SM01266 RY45_RS17315 RY45_RS17345 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_RS17355 SM00870 RY45_RS17355 RY45_RS17365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS17365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS17370 SM00937 RY45_RS17370 RY45_RS17410 SM00382 ATPases associated with a variety of cellular activities RY45_RS17435 SM00852 Probable molybdopterin binding domain RY45_RS17445 SM00825 Beta-ketoacyl synthase RY45_RS17450 SM00822 RY45_RS17450 RY45_RS17460 SM00825 Beta-ketoacyl synthase RY45_RS17520 SM00563 Phosphate acyltransferases RY45_RS17545 SM00477 DNA/RNA non-specific endonuclease RY45_RS17545 SM00892 DNA/RNA non-specific endonuclease RY45_RS17555 SM01057 Eukaryotic-type carbonic anhydrase RY45_RS17580 SM00382 ATPases associated with a variety of cellular activities RY45_RS17595 SM01012 RY45_RS17595 RY45_RS17605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RY45_RS17635 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RY45_RS17660 SM00382 ATPases associated with a variety of cellular activities RY45_RS17665 SM00382 ATPases associated with a variety of cellular activities RY45_RS17715 SM00028 Tetratricopeptide repeats RY45_RS17720 SM00495 Chitin-binding domain type 3 RY45_RS17720 SM00636 RY45_RS17720 RY45_RS17730 SM01126 RY45_RS17730 RY45_RS17770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS17770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS17780 SM00357 Cold shock protein domain RY45_RS17810 SM00479 RY45_RS17810 RY45_RS17850 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS17860 SM00052 Putative diguanylate phosphodiesterase RY45_RS17860 SM00091 PAS domain RY45_RS17860 SM00267 diguanylate cyclase RY45_RS17890 SM00382 ATPases associated with a variety of cellular activities RY45_RS17905 SM00450 Rhodanese Homology Domain RY45_RS17935 SM00052 Putative diguanylate phosphodiesterase RY45_RS17950 SM00382 ATPases associated with a variety of cellular activities RY45_RS17960 SM00260 Two component signalling adaptor domain RY45_RS17960 SM00448 cheY-homologous receiver domain RY45_RS18000 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_RS18015 SM00448 cheY-homologous receiver domain RY45_RS18025 SM00382 ATPases associated with a variety of cellular activities RY45_RS18120 SM00014 Acid phosphatase homologues RY45_RS18130 SM00448 cheY-homologous receiver domain RY45_RS18130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS18160 SM00487 DEAD-like helicases superfamily RY45_RS18160 SM00490 helicase superfamily c-terminal domain RY45_RS18160 SM00847 Helicase associated domain (HA2) Add an annotation RY45_RS18205 SM00450 Rhodanese Homology Domain RY45_RS18245 SM00382 ATPases associated with a variety of cellular activities RY45_RS18300 SM00382 ATPases associated with a variety of cellular activities RY45_RS18320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS18355 SM00244 prohibitin homologues RY45_RS18365 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS18370 SM00382 ATPases associated with a variety of cellular activities RY45_RS18405 SM00422 helix_turn_helix, mercury resistance RY45_RS18465 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS18530 SM00344 helix_turn_helix ASNC type RY45_RS18545 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_RS18555 SM00829 Enoylreductase RY45_RS18575 SM00642 Alpha-amylase domain RY45_RS18580 SM00642 Alpha-amylase domain RY45_RS18590 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RY45_RS18605 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS18605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS18695 SM00382 ATPases associated with a variety of cellular activities RY45_RS18700 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RY45_RS18705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS18705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS18765 SM01152 RY45_RS18765 RY45_RS18785 SM00382 ATPases associated with a variety of cellular activities RY45_RS18800 SM00487 DEAD-like helicases superfamily RY45_RS18800 SM00490 helicase superfamily c-terminal domain RY45_RS18845 SM00411 bacterial (prokaryotic) histone like domain RY45_RS18860 SM00382 ATPases associated with a variety of cellular activities RY45_RS18885 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS18885 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RY45_RS18885 SM00091 PAS domain RY45_RS18885 SM00267 diguanylate cyclase RY45_RS18900 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RY45_RS18905 SM01133 RY45_RS18905 RY45_RS18955 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS18985 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS19185 SM01091 Transporter associated domain RY45_RS19240 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RY45_RS19250 SM00382 ATPases associated with a variety of cellular activities RY45_RS19260 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RY45_RS19260 SM00534 ATPase domain of DNA mismatch repair MUTS family RY45_RS19275 SM00347 helix_turn_helix multiple antibiotic resistance protein RY45_RS19280 SM01126 RY45_RS19280 RY45_RS19320 SM00382 ATPases associated with a variety of cellular activities RY45_RS19340 SM00986 Uracil DNA glycosylase superfamily RY45_RS19340 SM00987 UreE urease accessory protein, C-terminal domain RY45_RS19375 SM00563 Phosphate acyltransferases RY45_RS19400 SM00271 DnaJ molecular chaperone homology domain RY45_RS19440 SM00434 DNA Topoisomerase IV RY45_RS19445 SM00387 Histidine kinase-like ATPases RY45_RS19445 SM00433 TopoisomeraseII RY45_RS19515 SM01118 RY45_RS19515 RY45_RS19545 SM00450 Rhodanese Homology Domain RY45_RS19555 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS19585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RY45_RS19590 SM00382 ATPases associated with a variety of cellular activities RY45_RS19600 SM00478 endonuclease III RY45_RS19600 SM00525 RY45_RS19600 RY45_RS19625 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS19665 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RY45_RS19665 SM00267 diguanylate cyclase RY45_RS19670 SM01130 RY45_RS19670 RY45_RS19740 SM00382 ATPases associated with a variety of cellular activities RY45_RS19770 SM00344 helix_turn_helix ASNC type RY45_RS19775 SM01266 RY45_RS19775 RY45_RS19780 SM00642 Alpha-amylase domain RY45_RS19790 SM00354 helix_turn _helix lactose operon repressor RY45_RS19805 SM00870 RY45_RS19805 RY45_RS19820 SM00851 MGS-like domain RY45_RS19855 SM00260 Two component signalling adaptor domain RY45_RS19855 SM00448 cheY-homologous receiver domain RY45_RS19935 SM01207 RY45_RS19935 RY45_RS19940 SM00905 Dihydroneopterin aldolase RY45_RS19960 SM00833 Cobalamin synthesis protein cobW C-terminal domain RY45_RS19980 SM00052 Putative diguanylate phosphodiesterase RY45_RS20025 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS20025 SM00895 RY45_RS20025 RY45_RS20090 SM00957 SecA DEAD-like domain RY45_RS20090 SM00958 SecA preprotein cross-linking domain RY45_RS20105 SM00864 Tubulin/FtsZ family, GTPase domain RY45_RS20105 SM00865 Tubulin/FtsZ family, C-terminal domain RY45_RS20110 SM00842 Cell division protein FtsA RY45_RS20300 SM00858 RY45_RS20300 RY45_RS20345 SM00382 ATPases associated with a variety of cellular activities RY45_RS20345 SM00448 cheY-homologous receiver domain RY45_RS20405 SM00749 bacterial OsmY and nodulation domain RY45_RS20455 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_RS20460 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RY45_RS20535 SM00382 ATPases associated with a variety of cellular activities RY45_RS20555 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS20560 SM00382 ATPases associated with a variety of cellular activities RY45_RS20640 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS20670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS20670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS20680 SM00267 diguanylate cyclase RY45_RS20690 SM00421 helix_turn_helix, Lux Regulon RY45_RS20700 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS20715 SM00357 Cold shock protein domain RY45_RS20730 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS20730 SM00267 diguanylate cyclase RY45_RS20735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS20735 SM00387 Histidine kinase-like ATPases RY45_RS20735 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS20740 SM00448 cheY-homologous receiver domain RY45_RS20740 SM00862 Transcriptional regulatory protein, C terminal RY45_RS20765 SM00091 PAS domain RY45_RS20765 SM00267 diguanylate cyclase RY45_RS20770 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS20820 SM00530 Helix-turn-helix XRE-family like proteins RY45_RS20825 SM00345 helix_turn_helix gluconate operon transcriptional repressor RY45_RS20825 SM00866 RY45_RS20825 RY45_RS20850 SM00382 ATPases associated with a variety of cellular activities RY45_RS20860 SM00267 diguanylate cyclase RY45_RS20875 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS20875 SM00871 Bacterial transcription activator, effector binding domain RY45_RS20885 SM01060 RY45_RS20885 RY45_RS20910 SM00014 Acid phosphatase homologues RY45_RS20940 SM00091 PAS domain RY45_RS20955 SM01120 RY45_RS20955 RY45_RS20965 SM01126 RY45_RS20965 RY45_RS21015 SM00838 Elongation factor G C-terminus RY45_RS21015 SM00889 Elongation factor G, domain IV RY45_RS21055 SM00663 RNA polymerase I subunit A N-terminus RY45_RS21080 SM00649 Ribosomal protein L11/L12 RY45_RS21085 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RY45_RS21085 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RY45_RS21140 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RY45_RS21140 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RY45_RS21140 SM00493 RY45_RS21140 RY45_RS21160 SM00387 Histidine kinase-like ATPases RY45_RS21165 SM00448 cheY-homologous receiver domain RY45_RS21165 SM00862 Transcriptional regulatory protein, C terminal RY45_RS21195 SM00382 ATPases associated with a variety of cellular activities RY45_RS21195 SM00448 cheY-homologous receiver domain RY45_RS21205 SM00387 Histidine kinase-like ATPases RY45_RS21205 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS21220 SM00116 Domain in cystathionine beta-synthase and other proteins. RY45_RS21230 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS21235 SM00344 helix_turn_helix ASNC type RY45_RS21245 SM00849 Metallo-beta-lactamase superfamily RY45_RS21250 SM00382 ATPases associated with a variety of cellular activities RY45_RS21250 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_RS21260 SM00363 S4 RNA-binding domain RY45_RS21295 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RY45_RS21295 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RY45_RS21305 SM00342 helix_turn_helix, arabinose operon control protein RY45_RS21315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS21315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS21380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS21380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS21390 SM00382 ATPases associated with a variety of cellular activities RY45_RS21400 SM01038 Beta galactosidase small chain RY45_RS21405 SM00354 helix_turn _helix lactose operon repressor RY45_RS21450 SM00464 Found in ATP-dependent protease La (LON) RY45_RS21455 SM00836 DALR anticodon binding domain RY45_RS21455 SM01016 Arginyl tRNA synthetase N terminal dom RY45_RS21470 SM00382 ATPases associated with a variety of cellular activities RY45_RS21470 SM01086 C-terminal, D2-small domain, of ClpB protein RY45_RS21505 SM00924 MgtE intracellular N domain RY45_RS21510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). RY45_RS21510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS21510 SM01358 RY45_RS21510 RY45_RS21540 SM00341 Helicase and RNase D C-terminal RY45_RS21540 SM00487 DEAD-like helicases superfamily RY45_RS21540 SM00490 helicase superfamily c-terminal domain RY45_RS21540 SM00956 RY45_RS21540 RY45_RS21575 SM00382 ATPases associated with a variety of cellular activities RY45_RS21595 SM01230 RY45_RS21595 RY45_RS21640 SM00642 Alpha-amylase domain RY45_RS21710 SM00822 RY45_RS21710 RY45_RS21735 SM00858 RY45_RS21735 RY45_RS21795 SM00448 cheY-homologous receiver domain RY45_RS21795 SM00862 Transcriptional regulatory protein, C terminal RY45_RS21800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RY45_RS21800 SM00387 Histidine kinase-like ATPases RY45_RS21800 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS21810 SM00919 Malic enzyme, NAD binding domain RY45_RS21810 SM01274 RY45_RS21810 RY45_RS21825 SM00487 DEAD-like helicases superfamily RY45_RS21825 SM00490 helicase superfamily c-terminal domain RY45_RS21875 SM00382 ATPases associated with a variety of cellular activities RY45_RS21880 SM00563 Phosphate acyltransferases RY45_RS21885 SM00563 Phosphate acyltransferases RY45_RS21910 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS21915 SM00382 ATPases associated with a variety of cellular activities RY45_RS21945 SM00267 diguanylate cyclase RY45_RS21950 SM00422 helix_turn_helix, mercury resistance RY45_RS22020 SM00829 Enoylreductase RY45_RS22030 SM00052 Putative diguanylate phosphodiesterase RY45_RS22030 SM00267 diguanylate cyclase RY45_RS22115 SM00421 helix_turn_helix, Lux Regulon RY45_RS22125 SM00420 helix_turn_helix, Deoxyribose operon repressor RY45_RS22125 SM01134 RY45_RS22125 RY45_RS22130 SM00448 cheY-homologous receiver domain RY45_RS22130 SM00862 Transcriptional regulatory protein, C terminal RY45_RS22135 SM00387 Histidine kinase-like ATPases RY45_RS22135 SM00388 His Kinase A (phosphoacceptor) domain RY45_RS22160 SM00382 ATPases associated with a variety of cellular activities RY45_RS22200 SM00470 ParB-like nuclease domain RY45_RS22215 SM01228 RY45_RS22215 RY45_RS22230 SM00382 ATPases associated with a variety of cellular activities RY45_RS22235 SM00382 ATPases associated with a variety of cellular activities RY45_RS22270 SM00382 ATPases associated with a variety of cellular activities RY45_RS22280 SM00062 Bacterial periplasmic substrate-binding proteins RY45_RS22350 SM00433 TopoisomeraseII RY45_RS22470 SM00862 Transcriptional regulatory protein, C terminal