locus-tag class description V428_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix V428_RS00005 PF11638 DnaA N-terminal domain V428_RS00005 PF00308 Bacterial dnaA protein V428_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain V428_RS00010 PF02767 DNA polymerase III beta subunit, central domain V428_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain V428_RS00015 PF02463 RecF/RecN/SMC N terminal domain V428_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus V428_RS00020 PF01751 Toprim domain V428_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS00020 PF18053 DNA gyrase B subunit insert domain V428_RS00020 PF00204 DNA gyrase B V428_RS00030 PF08279 HTH domain V428_RS00030 PF13280 WYL domain V428_RS00035 PF00011 Hsp20/alpha crystallin family V428_RS00040 PF00011 Hsp20/alpha crystallin family V428_RS00045 PF00155 Aminotransferase class I and II V428_RS00060 PF07690 Major Facilitator Superfamily V428_RS00065 PF00072 Response regulator receiver domain V428_RS00065 PF00486 Transcriptional regulatory protein, C terminal V428_RS00070 PF13492 GAF domain V428_RS00070 PF02702 Osmosensitive K+ channel His kinase sensor domain V428_RS00070 PF00512 His Kinase A (phospho-acceptor) domain V428_RS00070 PF13493 Domain of unknown function (DUF4118) V428_RS00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS00075 PF02669 K+-transporting ATPase, c chain V428_RS00085 PF03814 Potassium-transporting ATPase A subunit V428_RS00090 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS00090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_RS00095 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS00095 PF00512 His Kinase A (phospho-acceptor) domain V428_RS00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS00100 PF00873 AcrB/AcrD/AcrF family V428_RS00105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS00110 PF00440 Bacterial regulatory proteins, tetR family V428_RS00140 PF00224 Pyruvate kinase, barrel domain V428_RS00140 PF02887 Pyruvate kinase, alpha/beta domain V428_RS00145 PF07690 Major Facilitator Superfamily V428_RS00155 PF00672 HAMP domain V428_RS00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS00155 PF00512 His Kinase A (phospho-acceptor) domain V428_RS00160 PF02954 Bacterial regulatory protein, Fis family V428_RS00160 PF00072 Response regulator receiver domain V428_RS00160 PF14532 Sigma-54 interaction domain V428_RS00175 PF12146 Serine aminopeptidase, S33 V428_RS00180 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS00185 PF00588 SpoU rRNA Methylase family V428_RS00185 PF12105 SpoU, rRNA methylase, C-terminal V428_RS00190 PF13291 ACT domain V428_RS00190 PF02824 TGS domain V428_RS00190 PF04607 Region found in RelA / SpoT proteins V428_RS00195 PF01192 RNA polymerase Rpb6 V428_RS00200 PF00625 Guanylate kinase V428_RS00205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_RS00220 PF00892 EamA-like transporter family V428_RS00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS00235 PF03466 LysR substrate binding domain V428_RS00240 PF00579 tRNA synthetases class I (W and Y) V428_RS00245 PF00582 Universal stress protein family V428_RS00250 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V428_RS00250 PF07055 Enoyl reductase FAD binding domain V428_RS00250 PF12241 Trans-2-enoyl-CoA reductase catalytic region V428_RS00255 PF00990 Diguanylate cyclase, GGDEF domain V428_RS00260 PF00210 Ferritin-like domain V428_RS00270 PF08722 TnsA endonuclease N terminal V428_RS00270 PF08721 TnsA endonuclease C terminal V428_RS00285 PF13401 AAA domain V428_RS00285 PF11426 Tn7 transposition regulator TnsC V428_RS00290 PF13657 HipA N-terminal domain V428_RS00290 PF07804 HipA-like C-terminal domain V428_RS00295 PF12008 Type I restriction and modification enzyme - subunit R C terminal V428_RS00295 PF18766 SWI2/SNF2 ATPase V428_RS00295 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) V428_RS00305 PF00270 DEAD/DEAH box helicase V428_RS00305 PF13749 Putative ATP-dependent DNA helicase recG C-terminal V428_RS00305 PF17191 RecG wedge domain V428_RS00320 PF02384 N-6 DNA Methylase V428_RS00320 PF12161 HsdM N-terminal domain V428_RS00330 PF07690 Major Facilitator Superfamily V428_RS00335 PF01810 LysE type translocator V428_RS00350 PF15976 CS1-pili formation C-terminal V428_RS00350 PF16967 E-set like domain V428_RS00355 PF18649 EcpB C-terminal domain V428_RS00360 PF16449 Fimbrillin MatB V428_RS00365 PF00196 Bacterial regulatory proteins, luxR family V428_RS00365 PF00072 Response regulator receiver domain V428_RS00370 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS00370 PF00989 PAS fold V428_RS00370 PF01627 Hpt domain V428_RS00370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS00370 PF00072 Response regulator receiver domain V428_RS00370 PF00512 His Kinase A (phospho-acceptor) domain V428_RS00380 PF06580 Histidine kinase V428_RS00380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS00380 PF07694 5TMR of 5TMR-LYT V428_RS00385 PF00072 Response regulator receiver domain V428_RS00385 PF04397 LytTr DNA-binding domain V428_RS00390 PF07690 Major Facilitator Superfamily V428_RS00395 PF02222 ATP-grasp domain V428_RS00395 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain V428_RS00400 PF00731 AIR carboxylase V428_RS00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS00415 PF03466 LysR substrate binding domain V428_RS00420 PF07715 TonB-dependent Receptor Plug Domain V428_RS00420 PF00593 TonB dependent receptor V428_RS00425 PF01177 Asp/Glu/Hydantoin racemase V428_RS00465 PF07969 Amidohydrolase family V428_RS00470 PF02537 CrcB-like protein, Camphor Resistance (CrcB) V428_RS00475 PF01209 ubiE/COQ5 methyltransferase family V428_RS00480 PF02036 SCP-2 sterol transfer family V428_RS00485 PF03109 ABC1 family V428_RS00490 PF02416 mttA/Hcf106 family V428_RS00495 PF02416 mttA/Hcf106 family V428_RS00500 PF00902 Sec-independent protein translocase protein (TatC) V428_RS00505 PF01026 TatD related DNase V428_RS00510 PF00490 Delta-aminolevulinic acid dehydratase V428_RS00515 PF01432 Peptidase family M3 V428_RS00520 PF00563 EAL domain V428_RS00520 PF00990 Diguanylate cyclase, GGDEF domain V428_RS00520 PF03707 Bacterial signalling protein N terminal repeat V428_RS00525 PF04445 Putative SAM-dependent methyltransferase V428_RS00540 PF02541 Ppx/GppA phosphatase family V428_RS00545 PF00270 DEAD/DEAH box helicase V428_RS00545 PF00271 Helicase conserved C-terminal domain V428_RS00550 PF00085 Thioredoxin V428_RS00555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_RS00555 PF07498 Rho termination factor, N-terminal domain V428_RS00555 PF07497 Rho termination factor, RNA-binding domain V428_RS00565 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase V428_RS00570 PF00175 Oxidoreductase NAD-binding domain V428_RS00575 PF04380 Membrane fusogenic activity V428_RS00580 PF12262 Bacterial virulence factor lipase N-terminal V428_RS00585 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease V428_RS00585 PF01694 Rhomboid family V428_RS00590 PF00581 Rhodanese-like domain V428_RS00605 PF00005 ABC transporter V428_RS00610 PF12399 Branched-chain amino acid ATP-binding cassette transporter V428_RS00610 PF00005 ABC transporter V428_RS00615 PF11862 Domain of unknown function (DUF3382) V428_RS00615 PF02653 Branched-chain amino acid transport system / permease component V428_RS00620 PF02653 Branched-chain amino acid transport system / permease component V428_RS00625 PF13458 Periplasmic binding protein V428_RS00630 PF00356 Bacterial regulatory proteins, lacI family V428_RS00635 PF11975 Family 4 glycosyl hydrolase C-terminal domain V428_RS00635 PF02056 Family 4 glycosyl hydrolase V428_RS00640 PF02378 Phosphotransferase system, EIIC V428_RS00640 PF00367 phosphotransferase system, EIIB V428_RS00645 PF00392 Bacterial regulatory proteins, gntR family V428_RS00645 PF07702 UTRA domain V428_RS00650 PF01590 GAF domain V428_RS00650 PF00158 Sigma-54 interaction domain V428_RS00655 PF00301 Rubredoxin V428_RS00655 PF00753 Metallo-beta-lactamase superfamily V428_RS00655 PF00258 Flavodoxin V428_RS00660 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS00660 PF18113 Rubredoxin binding C-terminal domain V428_RS00670 PF12801 4Fe-4S binding domain V428_RS00675 PF03222 Tryptophan/tyrosine permease family V428_RS00695 PF01747 ATP-sulfurylase V428_RS00695 PF14306 PUA-like domain V428_RS00710 PF02092 Glycyl-tRNA synthetase beta subunit V428_RS00710 PF05746 DALR anticodon binding domain V428_RS00715 PF02091 Glycyl-tRNA synthetase alpha subunit V428_RS00720 PF03352 Methyladenine glycosylase V428_RS00725 PF00857 Isochorismatase family V428_RS00730 PF00691 OmpA family V428_RS00730 PF13488 Glycine zipper V428_RS00735 PF01042 Endoribonuclease L-PSP V428_RS00740 PF01206 Sulfurtransferase TusA V428_RS00750 PF01547 Bacterial extracellular solute-binding protein V428_RS00755 PF00672 HAMP domain V428_RS00755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS00755 PF00512 His Kinase A (phospho-acceptor) domain V428_RS00760 PF00486 Transcriptional regulatory protein, C terminal V428_RS00760 PF00072 Response regulator receiver domain V428_RS00765 PF02803 Thiolase, C-terminal domain V428_RS00765 PF00108 Thiolase, N-terminal domain V428_RS00770 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V428_RS00770 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V428_RS00770 PF00378 Enoyl-CoA hydratase/isomerase V428_RS00775 PF00501 AMP-binding enzyme V428_RS00775 PF13193 AMP-binding enzyme C-terminal domain V428_RS00780 PF00557 Metallopeptidase family M24 V428_RS00785 PF01205 Uncharacterized protein family UPF0029 V428_RS00785 PF09186 Domain of unknown function (DUF1949) V428_RS00790 PF02386 Cation transport protein V428_RS00795 PF12724 Flavodoxin domain V428_RS00820 PF13380 CoA binding domain V428_RS00820 PF13607 Succinyl-CoA ligase like flavodoxin domain V428_RS00820 PF00583 Acetyltransferase (GNAT) family V428_RS00835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS00835 PF03466 LysR substrate binding domain V428_RS00840 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain V428_RS00840 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain V428_RS00845 PF00342 Phosphoglucose isomerase V428_RS00860 PF05552 Conserved TM helix V428_RS00860 PF00924 Mechanosensitive ion channel V428_RS00865 PF00440 Bacterial regulatory proteins, tetR family V428_RS00870 PF00692 dUTPase V428_RS00875 PF04127 DNA / pantothenate metabolism flavoprotein V428_RS00875 PF02441 Flavoprotein V428_RS00880 PF04002 RadC-like JAB domain V428_RS00885 PF00471 Ribosomal protein L33 V428_RS00895 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain V428_RS00895 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain V428_RS00895 PF06827 Zinc finger found in FPG and IleRS V428_RS00900 PF04393 Protein of unknown function (DUF535) V428_RS00905 PF01467 Cytidylyltransferase-like V428_RS00910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_RS00915 PF00535 Glycosyl transferase family 2 V428_RS00920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V428_RS00925 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) V428_RS00930 PF03611 PTS system sugar-specific permease component V428_RS00940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_RS00945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_RS00945 PF00356 Bacterial regulatory proteins, lacI family V428_RS00950 PF08240 Alcohol dehydrogenase GroES-like domain V428_RS00950 PF00107 Zinc-binding dehydrogenase V428_RS00960 PF03748 Flagellar basal body-associated protein FliL V428_RS00965 PF04345 Chorismate lyase V428_RS00970 PF01040 UbiA prenyltransferase family V428_RS00975 PF01553 Acyltransferase V428_RS00980 PF00717 Peptidase S24-like V428_RS00980 PF01726 LexA DNA binding domain V428_RS00990 PF02630 SCO1/SenC V428_RS00995 PF01554 MatE V428_RS01000 PF00588 SpoU rRNA Methylase family V428_RS01005 PF16527 Two-component sensor protein CpxA, periplasmic domain V428_RS01005 PF00672 HAMP domain V428_RS01005 PF00512 His Kinase A (phospho-acceptor) domain V428_RS01005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS01010 PF00072 Response regulator receiver domain V428_RS01010 PF00486 Transcriptional regulatory protein, C terminal V428_RS01015 PF01545 Cation efflux family V428_RS01015 PF16916 Dimerisation domain of Zinc Transporter V428_RS01020 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS01020 PF06426 Serine acetyltransferase, N-terminal V428_RS01030 PF06005 Cell division protein ZapB V428_RS01040 PF01367 5'-3' exonuclease, C-terminal SAM fold V428_RS01040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V428_RS01040 PF00476 DNA polymerase family A V428_RS01040 PF01612 3'-5' exonuclease V428_RS01045 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS01085 PF00356 Bacterial regulatory proteins, lacI family V428_RS01090 PF02929 Beta galactosidase small chain V428_RS01090 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V428_RS01090 PF00703 Glycosyl hydrolases family 2 V428_RS01090 PF02837 Glycosyl hydrolases family 2, sugar binding domain V428_RS01090 PF16353 Domain of unknown function(DUF4981) V428_RS01095 PF04074 YhcH/YjgK/YiaL V428_RS01100 PF13520 Amino acid permease V428_RS01105 PF01588 Putative tRNA binding domain V428_RS01110 PF13520 Amino acid permease V428_RS01115 PF13593 SBF-like CPA transporter family (DUF4137) V428_RS01120 PF03781 Sulfatase-modifying factor enzyme 1 V428_RS01120 PF12867 DinB superfamily V428_RS01130 PF00756 Putative esterase V428_RS01135 PF00107 Zinc-binding dehydrogenase V428_RS01135 PF08240 Alcohol dehydrogenase GroES-like domain V428_RS01140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS01140 PF03466 LysR substrate binding domain V428_RS01145 PF02653 Branched-chain amino acid transport system / permease component V428_RS01150 PF02653 Branched-chain amino acid transport system / permease component V428_RS01155 PF00005 ABC transporter V428_RS01160 PF02608 ABC transporter substrate-binding protein PnrA-like V428_RS01165 PF13361 UvrD-like helicase C-terminal domain V428_RS01165 PF00580 UvrD/REP helicase N-terminal domain V428_RS01175 PF03466 LysR substrate binding domain V428_RS01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS01185 PF14001 YdfZ protein V428_RS01210 PF06206 CpeT/CpcT family (DUF1001) V428_RS01220 PF01810 LysE type translocator V428_RS01225 PF04143 Sulphur transport V428_RS01230 PF00690 Cation transporter/ATPase, N-terminus V428_RS01230 PF00689 Cation transporting ATPase, C-terminus V428_RS01235 PF01810 LysE type translocator V428_RS01240 PF12833 Helix-turn-helix domain V428_RS01245 PF00892 EamA-like transporter family V428_RS01250 PF00171 Aldehyde dehydrogenase family V428_RS01255 PF07883 Cupin domain V428_RS01255 PF01381 Helix-turn-helix V428_RS01260 PF00202 Aminotransferase class-III V428_RS01270 PF02540 NAD synthase V428_RS01270 PF00958 GMP synthase C terminal domain V428_RS01270 PF00117 Glutamine amidotransferase class-I V428_RS01275 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V428_RS01275 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V428_RS01280 PF00294 pfkB family carbohydrate kinase V428_RS01285 PF02082 Transcriptional regulator V428_RS01300 PF02646 RmuC family V428_RS01305 PF02386 Cation transport protein V428_RS01310 PF02080 TrkA-C domain V428_RS01310 PF02254 TrkA-N domain V428_RS01315 PF01189 16S rRNA methyltransferase RsmB/F V428_RS01315 PF01029 NusB family V428_RS01320 PF02911 Formyl transferase, C-terminal domain V428_RS01320 PF00551 Formyl transferase V428_RS01325 PF01327 Polypeptide deformylase V428_RS01335 PF02481 DNA recombination-mediator protein A V428_RS01335 PF17782 DprA winged helix domain V428_RS01340 PF04361 Protein of unknown function (DUF494) V428_RS01345 PF01396 Topoisomerase DNA binding C4 zinc finger V428_RS01350 PF00731 AIR carboxylase V428_RS01355 PF01300 Telomere recombination V428_RS01360 PF01218 Coproporphyrinogen III oxidase V428_RS01365 PF08501 Shikimate dehydrogenase substrate binding domain V428_RS01365 PF18317 Shikimate 5'-dehydrogenase C-terminal domain V428_RS01365 PF01488 Shikimate / quinate 5-dehydrogenase V428_RS01370 PF07369 Protein of unknown function (DUF1488) V428_RS01375 PF01926 50S ribosome-binding GTPase V428_RS01380 PF00034 Cytochrome c V428_RS01390 PF04220 Der GTPase activator (YihI) V428_RS01395 PF10675 Protein of unknown function (DUF2489) V428_RS01400 PF04055 Radical SAM superfamily V428_RS01400 PF06969 HemN C-terminal domain V428_RS01405 PF00962 Adenosine/AMP deaminase V428_RS01410 PF02954 Bacterial regulatory protein, Fis family V428_RS01410 PF00158 Sigma-54 interaction domain V428_RS01410 PF00072 Response regulator receiver domain V428_RS01415 PF00512 His Kinase A (phospho-acceptor) domain V428_RS01415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS01415 PF00989 PAS fold V428_RS01425 PF03951 Glutamine synthetase, beta-Grasp domain V428_RS01425 PF00120 Glutamine synthetase, catalytic domain V428_RS01430 PF00009 Elongation factor Tu GTP binding domain V428_RS01430 PF00679 Elongation factor G C-terminus V428_RS01430 PF03144 Elongation factor Tu domain 2 V428_RS01435 PF03631 Virulence factor BrkB V428_RS01440 PF02580 D-Tyr-tRNA(Tyr) deacylase V428_RS01450 PF00583 Acetyltransferase (GNAT) family V428_RS01450 PF09500 Putative thioesterase (yiiD_Cterm) V428_RS01460 PF00270 DEAD/DEAH box helicase V428_RS01460 PF00271 Helicase conserved C-terminal domain V428_RS01460 PF17191 RecG wedge domain V428_RS01465 PF13091 PLD-like domain V428_RS01470 PF02447 GntP family permease V428_RS01475 PF01202 Shikimate kinase V428_RS01480 PF00920 Dehydratase family V428_RS01485 PF01081 KDPG and KHG aldolase V428_RS01490 PF00356 Bacterial regulatory proteins, lacI family V428_RS01490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_RS01500 PF01551 Peptidase family M23 V428_RS01505 PF01676 Metalloenzyme superfamily V428_RS01505 PF06415 BPG-independent PGAM N-terminus (iPGM_N) V428_RS01510 PF00581 Rhodanese-like domain V428_RS01515 PF02556 Preprotein translocase subunit SecB V428_RS01520 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V428_RS01520 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus V428_RS01525 PF01521 Iron-sulphur cluster biosynthesis V428_RS01525 PF01106 NifU-like domain V428_RS01530 PF00156 Phosphoribosyl transferase domain V428_RS01535 PF00561 alpha/beta hydrolase fold V428_RS01555 PF00575 S1 RNA binding domain V428_RS01555 PF17674 HHH domain V428_RS01555 PF09371 Tex-like protein N-terminal domain V428_RS01555 PF16921 Tex protein YqgF-like domain V428_RS01560 PF03449 Transcription elongation factor, N-terminal V428_RS01560 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_RS01565 PF00486 Transcriptional regulatory protein, C terminal V428_RS01565 PF00072 Response regulator receiver domain V428_RS01570 PF00512 His Kinase A (phospho-acceptor) domain V428_RS01570 PF00672 HAMP domain V428_RS01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS01580 PF00338 Ribosomal protein S10p/S20e V428_RS01585 PF00297 Ribosomal protein L3 V428_RS01590 PF00573 Ribosomal protein L4/L1 family V428_RS01595 PF00276 Ribosomal protein L23 V428_RS01600 PF00181 Ribosomal Proteins L2, RNA binding domain V428_RS01600 PF03947 Ribosomal Proteins L2, C-terminal domain V428_RS01605 PF00203 Ribosomal protein S19 V428_RS01610 PF00237 Ribosomal protein L22p/L17e V428_RS01615 PF07650 KH domain V428_RS01615 PF00189 Ribosomal protein S3, C-terminal domain V428_RS01620 PF00252 Ribosomal protein L16p/L10e V428_RS01625 PF00831 Ribosomal L29 protein V428_RS01630 PF00366 Ribosomal protein S17 V428_RS01635 PF00238 Ribosomal protein L14p/L23e V428_RS01640 PF00467 KOW motif V428_RS01640 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 V428_RS01645 PF00673 ribosomal L5P family C-terminus V428_RS01645 PF00281 Ribosomal protein L5 V428_RS01650 PF00253 Ribosomal protein S14p/S29e V428_RS01655 PF00410 Ribosomal protein S8 V428_RS01660 PF00347 Ribosomal protein L6 V428_RS01665 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast V428_RS01670 PF03719 Ribosomal protein S5, C-terminal domain V428_RS01670 PF00333 Ribosomal protein S5, N-terminal domain V428_RS01675 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A V428_RS01680 PF00344 SecY translocase V428_RS01685 PF00416 Ribosomal protein S13/S18 V428_RS01690 PF00411 Ribosomal protein S11 V428_RS01695 PF01479 S4 domain V428_RS01695 PF00163 Ribosomal protein S4/S9 N-terminal domain V428_RS01700 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain V428_RS01700 PF01000 RNA polymerase Rpb3/RpoA insert domain V428_RS01700 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain V428_RS01745 PF02254 TrkA-N domain V428_RS01745 PF00999 Sodium/hydrogen exchanger family V428_RS01750 PF02525 Flavodoxin-like fold V428_RS01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS01755 PF03466 LysR substrate binding domain V428_RS01760 PF00106 short chain dehydrogenase V428_RS01775 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_RS01775 PF00326 Prolyl oligopeptidase family V428_RS01790 PF07947 YhhN family V428_RS01795 PF07690 Major Facilitator Superfamily V428_RS01800 PF13533 Biotin-lipoyl like V428_RS01805 PF03466 LysR substrate binding domain V428_RS01805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS01815 PF00375 Sodium:dicarboxylate symporter family V428_RS01820 PF10678 Protein of unknown function (DUF2492) V428_RS01825 PF01914 MarC family integral membrane protein V428_RS01830 PF03466 LysR substrate binding domain V428_RS01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS01835 PF02416 mttA/Hcf106 family V428_RS01845 PF01464 Transglycosylase SLT domain V428_RS01850 PF13091 PLD-like domain V428_RS01860 PF00440 Bacterial regulatory proteins, tetR family V428_RS01880 PF00448 SRP54-type protein, GTPase domain V428_RS01880 PF02881 SRP54-type protein, helical bundle domain V428_RS01885 PF00005 ABC transporter V428_RS01890 PF18075 FtsX extracellular domain V428_RS01895 PF00140 Sigma-70 factor, region 1.2 V428_RS01895 PF04542 Sigma-70 region 2 V428_RS01895 PF04545 Sigma-70, region 4 V428_RS01900 PF00484 Carbonic anhydrase V428_RS01905 PF00392 Bacterial regulatory proteins, gntR family V428_RS01905 PF07702 UTRA domain V428_RS01910 PF01979 Amidohydrolase family V428_RS01915 PF00491 Arginase family V428_RS01920 PF17392 Urocanase C-terminal domain V428_RS01920 PF01175 Urocanase Rossmann-like domain V428_RS01920 PF17391 Urocanase N-terminal domain V428_RS01925 PF00221 Aromatic amino acid lyase V428_RS01930 PF01699 Sodium/calcium exchanger protein V428_RS01935 PF00563 EAL domain V428_RS01935 PF12792 CSS motif domain associated with EAL V428_RS01940 PF17157 Gammaproteobacterial periplasmic sensor domain V428_RS01940 PF00990 Diguanylate cyclase, GGDEF domain V428_RS01940 PF00563 EAL domain V428_RS01970 PF03958 Bacterial type II/III secretion system short domain V428_RS01970 PF00263 Bacterial type II and III secretion system protein V428_RS01975 PF09077 Mu B transposition protein, C terminal V428_RS01975 PF13401 AAA domain V428_RS01985 PF00437 Type II/IV secretion system protein V428_RS01985 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V428_RS01990 PF00482 Type II secretion system (T2SS), protein F V428_RS02000 PF07963 Prokaryotic N-terminal methylation motif V428_RS02005 PF00114 Pilin (bacterial filament) V428_RS02005 PF07963 Prokaryotic N-terminal methylation motif V428_RS02010 PF07963 Prokaryotic N-terminal methylation motif V428_RS02010 PF14245 Type IV pilin PilA V428_RS02040 PF04085 rod shape-determining protein MreC V428_RS02045 PF04093 rod shape-determining protein MreD V428_RS02050 PF02545 Maf-like protein V428_RS02055 PF10150 Ribonuclease E/G family V428_RS02055 PF00575 S1 RNA binding domain V428_RS02060 PF13502 AsmA-like C-terminal region V428_RS02060 PF13116 Protein of unknown function V428_RS02070 PF00795 Carbon-nitrogen hydrolase V428_RS02075 PF01523 Putative modulator of DNA gyrase V428_RS02080 PF01418 Helix-turn-helix domain, rpiR family V428_RS02080 PF01380 SIS domain V428_RS02095 PF00367 phosphotransferase system, EIIB V428_RS02095 PF02378 Phosphotransferase system, EIIC V428_RS02100 PF13580 SIS domain V428_RS02110 PF01914 MarC family integral membrane protein V428_RS02115 PF07690 Major Facilitator Superfamily V428_RS02125 PF00072 Response regulator receiver domain V428_RS02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS02130 PF00072 Response regulator receiver domain V428_RS02130 PF00672 HAMP domain V428_RS02130 PF01627 Hpt domain V428_RS02130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_RS02130 PF00512 His Kinase A (phospho-acceptor) domain V428_RS02135 PF13581 Histidine kinase-like ATPase domain V428_RS02140 PF08678 Rsbr N terminal V428_RS02140 PF01740 STAS domain V428_RS02145 PF13426 PAS domain V428_RS02145 PF08447 PAS fold V428_RS02145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS02160 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) V428_RS02165 PF04228 Putative neutral zinc metallopeptidase V428_RS02175 PF08668 HDOD domain V428_RS02200 PF00419 Fimbrial protein V428_RS02220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V428_RS02220 PF02753 Pili assembly chaperone PapD, C-terminal domain V428_RS02225 PF00577 Outer membrane usher protein V428_RS02225 PF13954 PapC N-terminal domain V428_RS02225 PF13953 PapC C-terminal domain V428_RS02230 PF00691 OmpA family V428_RS02230 PF01389 OmpA-like transmembrane domain V428_RS02235 PF00419 Fimbrial protein V428_RS02240 PF04320 Protein with unknown function (DUF469) V428_RS02270 PF00999 Sodium/hydrogen exchanger family V428_RS02275 PF02607 B12 binding domain V428_RS02275 PF02574 Homocysteine S-methyltransferase V428_RS02275 PF00809 Pterin binding enzyme V428_RS02275 PF02310 B12 binding domain V428_RS02275 PF02965 Vitamin B12 dependent methionine synthase, activation domain V428_RS02280 PF18030 RimK PreATP-grasp domain V428_RS02280 PF08443 RimK-like ATP-grasp domain V428_RS02285 PF05525 Branched-chain amino acid transport protein V428_RS02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS02295 PF00486 Transcriptional regulatory protein, C terminal V428_RS02295 PF00072 Response regulator receiver domain V428_RS02310 PF03440 Aerolysin/Pertussis toxin (APT) domain V428_RS02310 PF01117 Aerolysin toxin V428_RS02315 PF01964 Radical SAM ThiC family V428_RS02315 PF13667 ThiC-associated domain V428_RS02320 PF02581 Thiamine monophosphate synthase V428_RS02325 PF00899 ThiF family V428_RS02335 PF05690 Thiazole biosynthesis protein ThiG V428_RS02340 PF04055 Radical SAM superfamily V428_RS02340 PF06968 Biotin and Thiamin Synthesis associated domain V428_RS02350 PF13036 Peptidoglycan-synthase activator LpoB V428_RS02365 PF17151 Periplasmic sensor domain V428_RS02365 PF00990 Diguanylate cyclase, GGDEF domain V428_RS02375 PF06055 Exopolysaccharide synthesis, ExoD V428_RS02390 PF08803 Putative mono-oxygenase ydhR V428_RS02395 PF01638 HxlR-like helix-turn-helix V428_RS02420 PF00593 TonB dependent receptor V428_RS02420 PF07715 TonB-dependent Receptor Plug Domain V428_RS02435 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded V428_RS02440 PF03692 Putative zinc- or iron-chelating domain V428_RS02450 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase V428_RS02455 PF02602 Uroporphyrinogen-III synthase HemD V428_RS02460 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain V428_RS02460 PF03900 Porphobilinogen deaminase, C-terminal domain V428_RS02465 PF01295 Adenylate cyclase, class-I V428_RS02465 PF12633 Adenylate cyclase NT domain V428_RS02470 PF02230 Phospholipase/Carboxylesterase V428_RS02475 PF01491 Frataxin-like domain V428_RS02480 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V428_RS02480 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_RS02485 PF01678 Diaminopimelate epimerase V428_RS02495 PF02899 Phage integrase, N-terminal SAM-like domain V428_RS02495 PF00589 Phage integrase family V428_RS02500 PF13419 Haloacid dehalogenase-like hydrolase V428_RS02510 PF13545 Crp-like helix-turn-helix domain V428_RS02510 PF00027 Cyclic nucleotide-binding domain V428_RS02520 PF07722 Peptidase C26 V428_RS02540 PF00005 ABC transporter V428_RS02555 PF02464 Competence-damaged protein V428_RS02555 PF00994 Probable molybdopterin binding domain V428_RS02560 PF01966 HD domain V428_RS02560 PF00013 KH domain V428_RS02560 PF12072 Domain of unknown function (DUF3552) V428_RS02565 PF04204 Homoserine O-succinyltransferase V428_RS02575 PF01037 Lrp/AsnC ligand binding domain V428_RS02580 PF00884 Sulfatase V428_RS02595 PF02903 Alpha amylase, N-terminal ig-like domain V428_RS02595 PF00128 Alpha amylase, catalytic domain V428_RS02595 PF16657 Maltogenic Amylase, C-terminal domain V428_RS02600 PF02308 MgtC family V428_RS02620 PF00106 short chain dehydrogenase V428_RS02625 PF03577 Peptidase family C69 V428_RS02640 PF00465 Iron-containing alcohol dehydrogenase V428_RS02650 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_RS02655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS02655 PF12793 Sugar transport-related sRNA regulator N-term V428_RS02670 PF03280 Proteobacterial lipase chaperone protein V428_RS02675 PF00561 alpha/beta hydrolase fold V428_RS02685 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V428_RS02685 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V428_RS02690 PF02698 DUF218 domain V428_RS02695 PF08453 Peptidase family M9 N-terminal V428_RS02695 PF01752 Collagenase V428_RS02705 PF00419 Fimbrial protein V428_RS02715 PF13953 PapC C-terminal domain V428_RS02715 PF00577 Outer membrane usher protein V428_RS02715 PF13954 PapC N-terminal domain V428_RS02720 PF02753 Pili assembly chaperone PapD, C-terminal domain V428_RS02720 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V428_RS02725 PF00419 Fimbrial protein V428_RS02730 PF00419 Fimbrial protein V428_RS02740 PF00501 AMP-binding enzyme V428_RS02745 PF13378 Enolase C-terminal domain-like V428_RS02750 PF00378 Enoyl-CoA hydratase/isomerase V428_RS02755 PF12697 Alpha/beta hydrolase family V428_RS02760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_RS02760 PF16582 Middle domain of thiamine pyrophosphate V428_RS02760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_RS02765 PF00425 chorismate binding enzyme V428_RS02770 PF01040 UbiA prenyltransferase family V428_RS02795 PF00271 Helicase conserved C-terminal domain V428_RS02795 PF00270 DEAD/DEAH box helicase V428_RS02795 PF03880 DbpA RNA binding domain V428_RS02800 PF07670 Nucleoside recognition V428_RS02800 PF01773 Na+ dependent nucleoside transporter N-terminus V428_RS02800 PF07662 Na+ dependent nucleoside transporter C-terminus V428_RS02805 PF04307 LexA-binding, inner membrane-associated putative hydrolase V428_RS02820 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 V428_RS02825 PF01544 CorA-like Mg2+ transporter protein V428_RS02845 PF03471 Transporter associated domain V428_RS02845 PF00999 Sodium/hydrogen exchanger family V428_RS02845 PF02080 TrkA-C domain V428_RS02850 PF05068 Mannitol repressor V428_RS02855 PF08125 Mannitol dehydrogenase C-terminal domain V428_RS02855 PF01232 Mannitol dehydrogenase Rossmann domain V428_RS02860 PF02378 Phosphotransferase system, EIIC V428_RS02860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_RS02860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_RS02870 PF00440 Bacterial regulatory proteins, tetR family V428_RS02875 PF17876 Cold shock domain V428_RS02875 PF00773 RNB domain V428_RS02875 PF08206 Ribonuclease B OB domain V428_RS02880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS02880 PF03466 LysR substrate binding domain V428_RS02885 PF00765 Autoinducer synthase V428_RS02890 PF00196 Bacterial regulatory proteins, luxR family V428_RS02890 PF03472 Autoinducer binding domain V428_RS02895 PF01810 LysE type translocator V428_RS02900 PF00149 Calcineurin-like phosphoesterase V428_RS02900 PF02872 5'-nucleotidase, C-terminal domain V428_RS02905 PF05433 Glycine zipper 2TM domain V428_RS02910 PF00583 Acetyltransferase (GNAT) family V428_RS02915 PF11756 Nitrous oxide-stimulated promoter V428_RS02920 PF01321 Creatinase/Prolidase N-terminal domain V428_RS02920 PF00557 Metallopeptidase family M24 V428_RS02925 PF00392 Bacterial regulatory proteins, gntR family V428_RS02930 PF01293 Phosphoenolpyruvate carboxykinase V428_RS02935 PF01430 Hsp33 protein V428_RS02940 PF01479 S4 domain V428_RS02945 PF11356 Type II secretion system protein C V428_RS02950 PF03958 Bacterial type II/III secretion system short domain V428_RS02950 PF00263 Bacterial type II and III secretion system protein V428_RS02955 PF00437 Type II/IV secretion system protein V428_RS02960 PF00482 Type II secretion system (T2SS), protein F V428_RS02965 PF08334 Type II secretion system (T2SS), protein G V428_RS02965 PF07963 Prokaryotic N-terminal methylation motif V428_RS02970 PF12019 Type II transport protein GspH V428_RS02970 PF07963 Prokaryotic N-terminal methylation motif V428_RS02975 PF07963 Prokaryotic N-terminal methylation motif V428_RS02975 PF02501 Type II secretion system (T2SS), protein I V428_RS02980 PF07963 Prokaryotic N-terminal methylation motif V428_RS02980 PF11612 Type II secretion system (T2SS), protein J V428_RS02985 PF03934 Type II secretion system (T2SS), protein K V428_RS02990 PF05134 Type II secretion system (T2SS), protein L V428_RS02990 PF12693 GspL periplasmic domain V428_RS02995 PF04612 Type II secretion system (T2SS), protein M V428_RS03000 PF01203 Type II secretion system (T2SS), protein N V428_RS03005 PF00196 Bacterial regulatory proteins, luxR family V428_RS03010 PF01479 S4 domain V428_RS03010 PF00579 tRNA synthetases class I (W and Y) V428_RS03015 PF13419 Haloacid dehalogenase-like hydrolase V428_RS03020 PF00293 NUDIX domain V428_RS03025 PF00459 Inositol monophosphatase family V428_RS03030 PF03222 Tryptophan/tyrosine permease family V428_RS03035 PF01588 Putative tRNA binding domain V428_RS03040 PF06445 GyrI-like small molecule binding domain V428_RS03040 PF12833 Helix-turn-helix domain V428_RS03045 PF01340 Met Apo-repressor, MetJ V428_RS03050 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_RS03055 PF03447 Homoserine dehydrogenase, NAD binding domain V428_RS03055 PF00696 Amino acid kinase family V428_RS03055 PF00742 Homoserine dehydrogenase V428_RS03065 PF00311 Phosphoenolpyruvate carboxylase V428_RS03070 PF07687 Peptidase dimerisation domain V428_RS03070 PF01546 Peptidase family M20/M25/M40 V428_RS03075 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_RS03075 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_RS03080 PF00696 Amino acid kinase family V428_RS03085 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_RS03085 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_RS03090 PF00764 Arginosuccinate synthase V428_RS03095 PF00206 Lyase V428_RS03095 PF14698 Argininosuccinate lyase C-terminal V428_RS03120 PF12464 Maltose acetyltransferase V428_RS03120 PF14602 Hexapeptide repeat of succinyl-transferase V428_RS03125 PF13194 Domain of unknown function (DUF4010) V428_RS03140 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS03145 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS03150 PF00005 ABC transporter V428_RS03150 PF12857 TOBE-like domain V428_RS03155 PF03466 LysR substrate binding domain V428_RS03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS03160 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V428_RS03160 PF18416 N-acetylglucosamine binding protein domain 2 V428_RS03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS03165 PF12729 Four helix bundle sensory module for signal transduction V428_RS03165 PF00672 HAMP domain V428_RS03195 PF07676 WD40-like Beta Propeller Repeat V428_RS03195 PF14684 Tricorn protease C1 domain V428_RS03195 PF03572 Peptidase family S41 V428_RS03195 PF14685 Tricorn protease PDZ domain V428_RS03215 PF11230 Protein of unknown function (DUF3029) V428_RS03220 PF04055 Radical SAM superfamily V428_RS03230 PF03466 LysR substrate binding domain V428_RS03230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS03235 PF00155 Aminotransferase class I and II V428_RS03240 PF02583 Metal-sensitive transcriptional repressor V428_RS03255 PF18494 Pullulanase Ins domain V428_RS03255 PF11852 Domain of unknown function (DUF3372) V428_RS03255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_RS03255 PF17967 Pullulanase N2 domain V428_RS03255 PF03714 Bacterial pullanase-associated domain V428_RS03260 PF00403 Heavy-metal-associated domain V428_RS03265 PF08534 Redoxin V428_RS03275 PF00270 DEAD/DEAH box helicase V428_RS03275 PF00271 Helicase conserved C-terminal domain V428_RS03290 PF03372 Endonuclease/Exonuclease/phosphatase family V428_RS03295 PF08447 PAS fold V428_RS03295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS03310 PF06062 Uncharacterised protein family (UPF0231) V428_RS03315 PF13556 PucR C-terminal helix-turn-helix domain V428_RS03315 PF17853 GGDEF-like domain V428_RS03315 PF05651 Putative sugar diacid recognition V428_RS03320 PF02447 GntP family permease V428_RS03325 PF02595 Glycerate kinase family V428_RS03335 PF00255 Glutathione peroxidase V428_RS03340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS03340 PF03466 LysR substrate binding domain V428_RS03345 PF01773 Na+ dependent nucleoside transporter N-terminus V428_RS03345 PF07662 Na+ dependent nucleoside transporter C-terminus V428_RS03345 PF07670 Nucleoside recognition V428_RS03350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_RS03350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_RS03355 PF00472 RF-1 domain V428_RS03360 PF00543 Nitrogen regulatory protein P-II V428_RS03365 PF13416 Bacterial extracellular solute-binding protein V428_RS03375 PF00005 ABC transporter V428_RS03375 PF08402 TOBE domain V428_RS03380 PF04261 Dyp-type peroxidase family V428_RS03385 PF01316 Arginine repressor, DNA binding domain V428_RS03385 PF02863 Arginine repressor, C-terminal domain V428_RS03390 PF00005 ABC transporter V428_RS03395 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS03400 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS03405 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS03410 PF00056 lactate/malate dehydrogenase, NAD binding domain V428_RS03410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain V428_RS03415 PF08238 Sel1 repeat V428_RS03420 PF00042 Globin V428_RS03420 PF00970 Oxidoreductase FAD-binding domain V428_RS03420 PF00175 Oxidoreductase NAD-binding domain V428_RS03425 PF02082 Transcriptional regulator V428_RS03430 PF00571 CBS domain V428_RS03430 PF03471 Transporter associated domain V428_RS03430 PF01595 Cyclin M transmembrane N-terminal domain V428_RS03435 PF01578 Cytochrome C assembly protein V428_RS03440 PF00448 SRP54-type protein, GTPase domain V428_RS03440 PF02978 Signal peptide binding domain V428_RS03440 PF02881 SRP54-type protein, helical bundle domain V428_RS03445 PF00886 Ribosomal protein S16 V428_RS03450 PF01782 RimM N-terminal domain V428_RS03450 PF05239 PRC-barrel domain V428_RS03455 PF01746 tRNA (Guanine-1)-methyltransferase V428_RS03460 PF01245 Ribosomal protein L19 V428_RS03470 PF02976 DNA mismatch repair enzyme MutH V428_RS03475 PF00293 NUDIX domain V428_RS03480 PF05524 PEP-utilising enzyme, N-terminal V428_RS03480 PF00391 PEP-utilising enzyme, mobile domain V428_RS03480 PF02896 PEP-utilising enzyme, TIM barrel domain V428_RS03480 PF01590 GAF domain V428_RS03485 PF01790 Prolipoprotein diacylglyceryl transferase V428_RS03490 PF00303 Thymidylate synthase V428_RS03495 PF06965 Na+/H+ antiporter 1 V428_RS03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS03505 PF03466 LysR substrate binding domain V428_RS03510 PF01022 Bacterial regulatory protein, arsR family V428_RS03515 PF01649 Ribosomal protein S20 V428_RS03520 PF03023 Lipid II flippase MurJ V428_RS03525 PF01687 Riboflavin kinase V428_RS03525 PF06574 FAD synthetase V428_RS03530 PF00133 tRNA synthetases class I (I, L, M and V) V428_RS03530 PF08264 Anticodon-binding domain of tRNA V428_RS03530 PF06827 Zinc finger found in FPG and IleRS V428_RS03535 PF01252 Signal peptidase (SPase) II V428_RS03540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_RS03545 PF02401 LytB protein V428_RS03570 PF05567 Neisseria PilC beta-propeller domain V428_RS03605 PF00795 Carbon-nitrogen hydrolase V428_RS03605 PF02540 NAD synthase V428_RS03610 PF00543 Nitrogen regulatory protein P-II V428_RS03620 PF02664 S-Ribosylhomocysteinase (LuxS) V428_RS03625 PF00990 Diguanylate cyclase, GGDEF domain V428_RS03630 PF08206 Ribonuclease B OB domain V428_RS03630 PF08461 Ribonuclease R winged-helix domain V428_RS03630 PF17876 Cold shock domain V428_RS03630 PF00575 S1 RNA binding domain V428_RS03630 PF00773 RNB domain V428_RS03635 PF08032 RNA 2'-O ribose methyltransferase substrate binding V428_RS03635 PF00588 SpoU rRNA Methylase family V428_RS03645 PF13673 Acetyltransferase (GNAT) domain V428_RS03665 PF01566 Natural resistance-associated macrophage protein V428_RS03670 PF01250 Ribosomal protein S6 V428_RS03675 PF01084 Ribosomal protein S18 V428_RS03680 PF03948 Ribosomal protein L9, C-terminal domain V428_RS03680 PF01281 Ribosomal protein L9, N-terminal domain V428_RS03685 PF00970 Oxidoreductase FAD-binding domain V428_RS03685 PF00175 Oxidoreductase NAD-binding domain V428_RS03700 PF14765 Polyketide synthase dehydratase V428_RS03700 PF00550 Phosphopantetheine attachment site V428_RS03700 PF08659 KR domain V428_RS03700 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_RS03700 PF08240 Alcohol dehydrogenase GroES-like domain V428_RS03700 PF00698 Acyl transferase domain V428_RS03700 PF16197 Ketoacyl-synthetase C-terminal extension V428_RS03700 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_RS03700 PF08990 Erythronolide synthase docking V428_RS03705 PF09335 SNARE associated Golgi protein V428_RS03710 PF05193 Peptidase M16 inactive domain V428_RS03710 PF00675 Insulinase (Peptidase family M16) V428_RS03715 PF04262 Glutamate-cysteine ligase V428_RS03725 PF00501 AMP-binding enzyme V428_RS03735 PF00583 Acetyltransferase (GNAT) family V428_RS03745 PF12592 Protein of unknown function (DUF3763) V428_RS03745 PF17868 AAA lid domain V428_RS03745 PF07728 AAA domain (dynein-related subfamily) V428_RS03750 PF05762 VWA domain containing CoxE-like protein V428_RS03755 PF00990 Diguanylate cyclase, GGDEF domain V428_RS03760 PF00072 Response regulator receiver domain V428_RS03760 PF00990 Diguanylate cyclase, GGDEF domain V428_RS03765 PF03144 Elongation factor Tu domain 2 V428_RS03765 PF16658 Class II release factor RF3, C-terminal domain V428_RS03765 PF00009 Elongation factor Tu GTP binding domain V428_RS03790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_RS03800 PF03466 LysR substrate binding domain V428_RS03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS03805 PF04371 Porphyromonas-type peptidyl-arginine deiminase V428_RS03810 PF01425 Amidase V428_RS03815 PF00753 Metallo-beta-lactamase superfamily V428_RS03825 PF00271 Helicase conserved C-terminal domain V428_RS03825 PF00270 DEAD/DEAH box helicase V428_RS03830 PF03466 LysR substrate binding domain V428_RS03830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS03845 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase V428_RS03850 PF00034 Cytochrome c V428_RS03850 PF03150 Di-haem cytochrome c peroxidase V428_RS03865 PF00445 Ribonuclease T2 family V428_RS03875 PF03060 Nitronate monooxygenase V428_RS03905 PF00293 NUDIX domain V428_RS03905 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain V428_RS03905 PF09297 NADH pyrophosphatase zinc ribbon domain V428_RS03910 PF16527 Two-component sensor protein CpxA, periplasmic domain V428_RS03910 PF00672 HAMP domain V428_RS03910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS03910 PF00512 His Kinase A (phospho-acceptor) domain V428_RS03915 PF00072 Response regulator receiver domain V428_RS03915 PF00486 Transcriptional regulatory protein, C terminal V428_RS03920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS03925 PF02687 FtsX-like permease family V428_RS03925 PF12704 MacB-like periplasmic core domain V428_RS03925 PF00005 ABC transporter V428_RS03930 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS03935 PF00005 ABC transporter V428_RS03940 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS03945 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS03950 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS03955 PF00326 Prolyl oligopeptidase family V428_RS03955 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_RS03975 PF03710 Glutamate-ammonia ligase adenylyltransferase V428_RS03975 PF08335 GlnD PII-uridylyltransferase V428_RS03985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS03985 PF02743 Cache domain V428_RS03985 PF00672 HAMP domain V428_RS03990 PF00027 Cyclic nucleotide-binding domain V428_RS03990 PF00520 Ion transport protein V428_RS03995 PF08239 Bacterial SH3 domain V428_RS04000 PF00171 Aldehyde dehydrogenase family V428_RS04000 PF01619 Proline dehydrogenase V428_RS04000 PF14850 DNA-binding domain of Proline dehydrogenase V428_RS04000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain V428_RS04005 PF00293 NUDIX domain V428_RS04005 PF09297 NADH pyrophosphatase zinc ribbon domain V428_RS04010 PF01208 Uroporphyrinogen decarboxylase (URO-D) V428_RS04015 PF00480 ROK family V428_RS04020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_RS04020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_RS04025 PF00162 Phosphoglycerate kinase V428_RS04030 PF01116 Fructose-bisphosphate aldolase class-II V428_RS04035 PF01266 FAD dependent oxidoreductase V428_RS04045 PF11412 Disulphide bond corrector protein DsbC V428_RS04045 PF02683 Cytochrome C biogenesis protein transmembrane region V428_RS04050 PF03091 CutA1 divalent ion tolerance protein V428_RS04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS04065 PF03466 LysR substrate binding domain V428_RS04070 PF01571 Aminomethyltransferase folate-binding domain V428_RS04075 PF03937 Flavinator of succinate dehydrogenase V428_RS04085 PF02910 Fumarate reductase flavoprotein C-term V428_RS04085 PF00890 FAD binding domain V428_RS04090 PF08281 Sigma-70, region 4 V428_RS04090 PF04542 Sigma-70 region 2 V428_RS04095 PF03873 Anti sigma-E protein RseA, C-terminal domain V428_RS04095 PF03872 Anti sigma-E protein RseA, N-terminal domain V428_RS04100 PF03888 MucB/RseB N-terminal domain V428_RS04100 PF17188 MucB/RseB C-terminal domain V428_RS04110 PF03144 Elongation factor Tu domain 2 V428_RS04110 PF06421 GTP-binding protein LepA C-terminus V428_RS04110 PF00009 Elongation factor Tu GTP binding domain V428_RS04110 PF00679 Elongation factor G C-terminus V428_RS04115 PF10502 Signal peptidase, peptidase S26 V428_RS04120 PF00035 Double-stranded RNA binding motif V428_RS04120 PF14622 Ribonuclease-III-like V428_RS04125 PF01926 50S ribosome-binding GTPase V428_RS04125 PF07650 KH domain V428_RS04130 PF11967 Recombination protein O N terminal V428_RS04130 PF02565 Recombination protein O C terminal V428_RS04135 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ V428_RS04145 PF01116 Fructose-bisphosphate aldolase class-II V428_RS04150 PF01979 Amidohydrolase family V428_RS04155 PF03610 PTS system fructose IIA component V428_RS04160 PF03613 PTS system mannose/fructose/sorbose family IID component V428_RS04165 PF03609 PTS system sorbose-specific iic component V428_RS04170 PF03830 PTS system sorbose subfamily IIB component V428_RS04175 PF01380 SIS domain V428_RS04180 PF08013 Tagatose 6 phosphate kinase V428_RS04185 PF00455 DeoR C terminal sensor domain V428_RS04185 PF08220 DeoR-like helix-turn-helix domain V428_RS04190 PF01510 N-acetylmuramoyl-L-alanine amidase V428_RS04195 PF07308 Protein of unknown function (DUF1456) V428_RS04200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS04200 PF00512 His Kinase A (phospho-acceptor) domain V428_RS04200 PF01627 Hpt domain V428_RS04200 PF00072 Response regulator receiver domain V428_RS04200 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_RS04200 PF00672 HAMP domain V428_RS04205 PF01938 TRAM domain V428_RS04205 PF05958 tRNA (Uracil-5-)-methyltransferase V428_RS04210 PF04607 Region found in RelA / SpoT proteins V428_RS04210 PF13291 ACT domain V428_RS04210 PF02824 TGS domain V428_RS04215 PF03819 MazG nucleotide pyrophosphohydrolase domain V428_RS04220 PF00117 Glutamine amidotransferase class-I V428_RS04220 PF06418 CTP synthase N-terminus V428_RS04225 PF00113 Enolase, C-terminal TIM barrel domain V428_RS04225 PF03952 Enolase, N-terminal domain V428_RS04230 PF04977 Septum formation initiator V428_RS04235 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase V428_RS04240 PF02542 YgbB family V428_RS04245 PF01142 tRNA pseudouridine synthase D (TruD) V428_RS04250 PF01975 Survival protein SurE V428_RS04260 PF09335 SNARE associated Golgi protein V428_RS04265 PF01476 LysM domain V428_RS04265 PF01551 Peptidase family M23 V428_RS04270 PF04539 Sigma-70 region 3 V428_RS04270 PF04545 Sigma-70, region 4 V428_RS04270 PF00140 Sigma-70 factor, region 1.2 V428_RS04270 PF04542 Sigma-70 region 2 V428_RS04275 PF00814 Glycoprotease family V428_RS04280 PF09424 Yqey-like protein V428_RS04285 PF01807 CHC2 zinc finger V428_RS04285 PF10410 DnaB-helicase binding domain of primase V428_RS04285 PF08278 DNA primase DnaG DnaB-binding V428_RS04285 PF08275 DNA primase catalytic core, N-terminal domain V428_RS04290 PF04539 Sigma-70 region 3 V428_RS04290 PF04545 Sigma-70, region 4 V428_RS04290 PF03979 Sigma-70 factor, region 1.1 V428_RS04290 PF04546 Sigma-70, non-essential region V428_RS04290 PF04542 Sigma-70 region 2 V428_RS04290 PF00140 Sigma-70 factor, region 1.2 V428_RS04305 PF00128 Alpha amylase, catalytic domain V428_RS04320 PF02844 Phosphoribosylglycinamide synthetase, N domain V428_RS04320 PF02843 Phosphoribosylglycinamide synthetase, C domain V428_RS04320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain V428_RS04325 PF02142 MGS-like domain V428_RS04325 PF01808 AICARFT/IMPCHase bienzyme V428_RS04330 PF13411 MerR HTH family regulatory protein V428_RS04335 PF01872 RibD C-terminal domain V428_RS04340 PF03889 Alternative ribosome-rescue factor A V428_RS04345 PF06969 HemN C-terminal domain V428_RS04345 PF04055 Radical SAM superfamily V428_RS04350 PF01725 Ham1 family V428_RS04355 PF07690 Major Facilitator Superfamily V428_RS04360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_RS04360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_RS04370 PF13302 Acetyltransferase (GNAT) domain V428_RS04380 PF07504 Fungalysin/Thermolysin Propeptide Motif V428_RS04380 PF04151 Bacterial pre-peptidase C-terminal domain V428_RS04380 PF01447 Thermolysin metallopeptidase, catalytic domain V428_RS04380 PF02868 Thermolysin metallopeptidase, alpha-helical domain V428_RS04380 PF03413 Peptidase propeptide and YPEB domain V428_RS04385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS04385 PF03466 LysR substrate binding domain V428_RS04390 PF07690 Major Facilitator Superfamily V428_RS04395 PF00267 Gram-negative porin V428_RS04400 PF03605 Anaerobic c4-dicarboxylate membrane transporter V428_RS04405 PF10415 Fumarase C C-terminus V428_RS04405 PF00206 Lyase V428_RS04410 PF04186 FxsA cytoplasmic membrane protein V428_RS04415 PF01554 MatE V428_RS04420 PF00166 Chaperonin 10 Kd subunit V428_RS04425 PF00118 TCP-1/cpn60 chaperonin family V428_RS04435 PF13188 PAS domain V428_RS04435 PF00990 Diguanylate cyclase, GGDEF domain V428_RS04435 PF00563 EAL domain V428_RS04435 PF03707 Bacterial signalling protein N terminal repeat V428_RS04445 PF00849 RNA pseudouridylate synthase V428_RS04450 PF12137 RNA polymerase recycling family C-terminal V428_RS04450 PF18339 RapA N-terminal Tudor like domain 1 V428_RS04450 PF00176 SNF2 family N-terminal domain V428_RS04450 PF18337 RapA N-terminal Tudor like domain V428_RS04450 PF00271 Helicase conserved C-terminal domain V428_RS04480 PF02867 Ribonucleotide reductase, barrel domain V428_RS04480 PF00317 Ribonucleotide reductase, all-alpha domain V428_RS04480 PF08343 Ribonucleotide reductase N-terminal V428_RS04490 PF02562 PhoH-like protein V428_RS04490 PF13638 PIN domain V428_RS04495 PF00005 ABC transporter V428_RS04500 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS04520 PF00694 Aconitase C-terminal domain V428_RS04525 PF00330 Aconitase family (aconitate hydratase) V428_RS04530 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_RS04535 PF08502 LeuA allosteric (dimerisation) domain V428_RS04535 PF00682 HMGL-like V428_RS04545 PF01569 PAP2 superfamily V428_RS04555 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_RS04555 PF00205 Thiamine pyrophosphate enzyme, central domain V428_RS04555 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_RS04560 PF10369 Small subunit of acetolactate synthase V428_RS04565 PF07085 DRTGG domain V428_RS04565 PF01515 Phosphate acetyl/butaryl transferase V428_RS04570 PF00871 Acetokinase family V428_RS04575 PF04217 Protein of unknown function, DUF412 V428_RS04580 PF03887 YfbU domain V428_RS04585 PF00578 AhpC/TSA family V428_RS04590 PF01842 ACT domain V428_RS04595 PF00701 Dihydrodipicolinate synthetase family V428_RS04600 PF06804 NlpB/DapX lipoprotein V428_RS04605 PF01259 SAICAR synthetase V428_RS04615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS04615 PF03466 LysR substrate binding domain V428_RS04620 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V428_RS04640 PF00072 Response regulator receiver domain V428_RS04640 PF00989 PAS fold V428_RS04640 PF01627 Hpt domain V428_RS04640 PF18415 Histidine kinase receptor ArcB trans-membrane domain V428_RS04640 PF00512 His Kinase A (phospho-acceptor) domain V428_RS04640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS04645 PF01966 HD domain V428_RS04645 PF13286 Phosphohydrolase-associated domain V428_RS04655 PF00072 Response regulator receiver domain V428_RS04655 PF00512 His Kinase A (phospho-acceptor) domain V428_RS04655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS04655 PF09456 RcsC Alpha-Beta-Loop (ABL) V428_RS04660 PF00990 Diguanylate cyclase, GGDEF domain V428_RS04660 PF00563 EAL domain V428_RS04660 PF03707 Bacterial signalling protein N terminal repeat V428_RS04665 PF00672 HAMP domain V428_RS04665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS04665 PF12729 Four helix bundle sensory module for signal transduction V428_RS04670 PF02357 Transcription termination factor nusG V428_RS04675 PF03180 NLPA lipoprotein V428_RS04680 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS04685 PF09383 NIL domain V428_RS04685 PF00005 ABC transporter V428_RS04700 PF00480 ROK family V428_RS04705 PF08331 Domain of unknown function (DUF1730) V428_RS04710 PF01256 Carbohydrate kinase V428_RS04710 PF03853 YjeF-related protein N-terminus V428_RS04715 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE V428_RS04720 PF01520 N-acetylmuramoyl-L-alanine amidase V428_RS04725 PF08676 MutL C terminal dimerisation domain V428_RS04725 PF01119 DNA mismatch repair protein, C-terminal domain V428_RS04735 PF17209 Hfq protein V428_RS04740 PF01926 50S ribosome-binding GTPase V428_RS04740 PF13167 GTP-binding GTPase N-terminal V428_RS04740 PF16360 GTP-binding GTPase Middle Region V428_RS04745 PF12221 Bacterial membrane protein N terminal V428_RS04745 PF01145 SPFH domain / Band 7 family V428_RS04750 PF01145 SPFH domain / Band 7 family V428_RS04755 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) V428_RS04760 PF00348 Polyprenyl synthetase V428_RS04770 PF01016 Ribosomal L27 protein V428_RS04775 PF01018 GTP1/OBG V428_RS04775 PF01926 50S ribosome-binding GTPase V428_RS04780 PF07670 Nucleoside recognition V428_RS04785 PF00501 AMP-binding enzyme V428_RS04785 PF13193 AMP-binding enzyme C-terminal domain V428_RS04805 PF00296 Luciferase-like monooxygenase V428_RS04815 PF00149 Calcineurin-like phosphoesterase V428_RS04820 PF04379 ApaG domain V428_RS04825 PF00398 Ribosomal RNA adenine dimethylase V428_RS04830 PF04166 Pyridoxal phosphate biosynthetic protein PdxA V428_RS04835 PF09312 SurA N-terminal domain V428_RS04835 PF00639 PPIC-type PPIASE domain V428_RS04840 PF03968 OstA-like protein V428_RS04840 PF04453 LPS transport system D V428_RS04845 PF01636 Phosphotransferase enzyme family V428_RS04850 PF00483 Nucleotidyl transferase V428_RS04855 PF05099 Tellurite resistance protein TerB V428_RS04855 PF00226 DnaJ domain V428_RS04860 PF00860 Permease family V428_RS04870 PF12848 ABC transporter V428_RS04870 PF00005 ABC transporter V428_RS04875 PF12167 Arm DNA-binding domain V428_RS04875 PF00589 Phage integrase family V428_RS05000 PF01555 DNA methylase V428_RS05005 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS05045 PF03354 Phage Terminase V428_RS05060 PF01343 Peptidase family S49 V428_RS05155 PF01048 Phosphorylase superfamily V428_RS05160 PF01464 Transglycosylase SLT domain V428_RS05175 PF03466 LysR substrate binding domain V428_RS05175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS05180 PF01048 Phosphorylase superfamily V428_RS05185 PF07662 Na+ dependent nucleoside transporter C-terminus V428_RS05185 PF01773 Na+ dependent nucleoside transporter N-terminus V428_RS05185 PF07670 Nucleoside recognition V428_RS05190 PF01791 DeoC/LacD family aldolase V428_RS05200 PF01370 NAD dependent epimerase/dehydratase family V428_RS05210 PF00005 ABC transporter V428_RS05215 PF01032 FecCD transport family V428_RS05225 PF06228 Haem utilisation ChuX/HutX V428_RS05230 PF01243 Pyridoxamine 5'-phosphate oxidase V428_RS05250 PF07715 TonB-dependent Receptor Plug Domain V428_RS05250 PF00593 TonB dependent receptor V428_RS05255 PF12832 MFS_1 like family V428_RS05260 PF13443 Cro/C1-type HTH DNA-binding domain V428_RS05270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS05270 PF00512 His Kinase A (phospho-acceptor) domain V428_RS05270 PF00989 PAS fold V428_RS05275 PF08329 Chitinase A, N-terminal domain V428_RS05275 PF00704 Glycosyl hydrolases family 18 V428_RS05280 PF17945 Beta/Gamma crystallin V428_RS05280 PF12561 ToxR activated gene A lipoprotein domain V428_RS05285 PF18416 N-acetylglucosamine binding protein domain 2 V428_RS05285 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V428_RS05290 PF13847 Methyltransferase domain V428_RS05295 PF00027 Cyclic nucleotide-binding domain V428_RS05295 PF13545 Crp-like helix-turn-helix domain V428_RS05300 PF02566 OsmC-like protein V428_RS05315 PF00485 Phosphoribulokinase / Uridine kinase family V428_RS05320 PF00893 Small Multidrug Resistance protein V428_RS05325 PF00892 EamA-like transporter family V428_RS05330 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase V428_RS05335 PF01522 Polysaccharide deacetylase V428_RS05340 PF01370 NAD dependent epimerase/dehydratase family V428_RS05340 PF02911 Formyl transferase, C-terminal domain V428_RS05340 PF00551 Formyl transferase V428_RS05345 PF00535 Glycosyl transferase family 2 V428_RS05350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_RS05355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V428_RS05355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V428_RS05355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V428_RS05360 PF06794 Uncharacterised protein family (UPF0270) V428_RS05365 PF00990 Diguanylate cyclase, GGDEF domain V428_RS05365 PF00563 EAL domain V428_RS05365 PF01590 GAF domain V428_RS05365 PF00360 Phytochrome region V428_RS05375 PF00072 Response regulator receiver domain V428_RS05375 PF01584 CheW-like domain V428_RS05385 PF09526 Probable metal-binding protein (DUF2387) V428_RS05390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_RS05395 PF04102 SlyX V428_RS05405 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_RS05405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_RS05410 PF02954 Bacterial regulatory protein, Fis family V428_RS05410 PF00072 Response regulator receiver domain V428_RS05410 PF00158 Sigma-54 interaction domain V428_RS05430 PF02872 5'-nucleotidase, C-terminal domain V428_RS05430 PF00149 Calcineurin-like phosphoesterase V428_RS05435 PF12792 CSS motif domain associated with EAL V428_RS05435 PF00563 EAL domain V428_RS05445 PF00772 DnaB-like helicase N terminal domain V428_RS05445 PF03796 DnaB-like helicase C terminal domain V428_RS05450 PF00842 Alanine racemase, C-terminal domain V428_RS05450 PF01168 Alanine racemase, N-terminal domain V428_RS05455 PF12838 4Fe-4S dicluster domain V428_RS05460 PF01136 Peptidase family U32 V428_RS05460 PF16325 Peptidase family U32 C-terminal domain V428_RS05465 PF00563 EAL domain V428_RS05465 PF01590 GAF domain V428_RS05465 PF00990 Diguanylate cyclase, GGDEF domain V428_RS05465 PF00989 PAS fold V428_RS05490 PF00266 Aminotransferase class-V V428_RS05495 PF00072 Response regulator receiver domain V428_RS05495 PF01339 CheB methylesterase V428_RS05500 PF03975 CheD chemotactic sensory transduction V428_RS05505 PF01739 CheR methyltransferase, SAM binding domain V428_RS05505 PF03705 CheR methyltransferase, all-alpha domain V428_RS05510 PF00672 HAMP domain V428_RS05510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS05510 PF02203 Tar ligand binding domain homologue V428_RS05515 PF01584 CheW-like domain V428_RS05520 PF12729 Four helix bundle sensory module for signal transduction V428_RS05520 PF00672 HAMP domain V428_RS05520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS05525 PF01584 CheW-like domain V428_RS05525 PF02895 Signal transducing histidine kinase, homodimeric domain V428_RS05525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS05525 PF01627 Hpt domain V428_RS05525 PF07194 P2 response regulator binding domain V428_RS05535 PF00072 Response regulator receiver domain V428_RS05540 PF02743 Cache domain V428_RS05540 PF00672 HAMP domain V428_RS05540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS05545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_RS05545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_RS05550 PF03466 LysR substrate binding domain V428_RS05550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS05555 PF01810 LysE type translocator V428_RS05560 PF01136 Peptidase family U32 V428_RS05560 PF12392 Collagenase V428_RS05565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_RS05565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_RS05580 PF02074 Carboxypeptidase Taq (M32) metallopeptidase V428_RS05600 PF00106 short chain dehydrogenase V428_RS05605 PF03573 outer membrane porin, OprD family V428_RS05610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS05610 PF02743 Cache domain V428_RS05610 PF00672 HAMP domain V428_RS05620 PF07995 Glucose / Sorbosone dehydrogenase V428_RS05625 PF00916 Sulfate permease family V428_RS05625 PF01740 STAS domain V428_RS05630 PF03976 Polyphosphate kinase 2 (PPK2) V428_RS05645 PF00872 Transposase, Mutator family V428_RS05650 PF13649 Methyltransferase domain V428_RS05660 PF00005 ABC transporter V428_RS05665 PF01032 FecCD transport family V428_RS05685 PF01590 GAF domain V428_RS05685 PF00158 Sigma-54 interaction domain V428_RS05710 PF00593 TonB dependent receptor V428_RS05710 PF07715 TonB-dependent Receptor Plug Domain V428_RS05730 PF00717 Peptidase S24-like V428_RS05735 PF00176 SNF2 family N-terminal domain V428_RS05735 PF12137 RNA polymerase recycling family C-terminal V428_RS05735 PF00271 Helicase conserved C-terminal domain V428_RS05735 PF18339 RapA N-terminal Tudor like domain 1 V428_RS05735 PF18337 RapA N-terminal Tudor like domain V428_RS05740 PF09382 RQC domain V428_RS05740 PF00270 DEAD/DEAH box helicase V428_RS05740 PF00271 Helicase conserved C-terminal domain V428_RS05740 PF00570 HRDC domain V428_RS05740 PF16124 RecQ zinc-binding V428_RS05760 PF00271 Helicase conserved C-terminal domain V428_RS05760 PF00570 HRDC domain V428_RS05760 PF16124 RecQ zinc-binding V428_RS05760 PF09382 RQC domain V428_RS05760 PF00270 DEAD/DEAH box helicase V428_RS05785 PF06508 Queuosine biosynthesis protein QueC V428_RS05790 PF04055 Radical SAM superfamily V428_RS05800 PF04002 RadC-like JAB domain V428_RS05840 PF09588 YqaJ-like viral recombinase domain V428_RS05870 PF00800 Prephenate dehydratase V428_RS05870 PF01817 Chorismate mutase type II V428_RS05900 PF08349 Protein of unknown function (DUF1722) V428_RS05905 PF13411 MerR HTH family regulatory protein V428_RS05910 PF00875 DNA photolyase V428_RS05910 PF03441 FAD binding domain of DNA photolyase V428_RS05920 PF00106 short chain dehydrogenase V428_RS05960 PF00210 Ferritin-like domain V428_RS05965 PF03063 Prismane/CO dehydrogenase family V428_RS05970 PF00042 Globin V428_RS05970 PF00970 Oxidoreductase FAD-binding domain V428_RS05970 PF00175 Oxidoreductase NAD-binding domain V428_RS05975 PF16363 GDP-mannose 4,6 dehydratase V428_RS05980 PF06965 Na+/H+ antiporter 1 V428_RS05980 PF13462 Thioredoxin V428_RS05990 PF03472 Autoinducer binding domain V428_RS05990 PF00196 Bacterial regulatory proteins, luxR family V428_RS06000 PF04717 Type VI secretion system, phage-baseplate injector V428_RS06020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS06020 PF03466 LysR substrate binding domain V428_RS06025 PF03306 Alpha-acetolactate decarboxylase V428_RS06030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_RS06030 PF00205 Thiamine pyrophosphate enzyme, central domain V428_RS06030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_RS06035 PF01965 DJ-1/PfpI family V428_RS06040 PF02558 Ketopantoate reductase PanE/ApbA V428_RS06040 PF08546 Ketopantoate reductase PanE/ApbA C terminal V428_RS06045 PF04461 Protein of unknown function (DUF520) V428_RS06050 PF03502 Nucleoside-specific channel-forming protein, Tsx V428_RS06055 PF07690 Major Facilitator Superfamily V428_RS06065 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V428_RS06075 PF05175 Methyltransferase small domain V428_RS06080 PF01722 BolA-like protein V428_RS06085 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) V428_RS06085 PF11973 NQRA C-terminal domain V428_RS06090 PF03116 NQR2, RnfD, RnfE family V428_RS06095 PF04205 FMN-binding domain V428_RS06100 PF02508 Rnf-Nqr subunit, membrane protein V428_RS06105 PF02508 Rnf-Nqr subunit, membrane protein V428_RS06110 PF00970 Oxidoreductase FAD-binding domain V428_RS06110 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_RS06110 PF00175 Oxidoreductase NAD-binding domain V428_RS06115 PF02424 ApbE family V428_RS06130 PF11798 IMS family HHH motif V428_RS06130 PF11799 impB/mucB/samB family C-terminal domain V428_RS06130 PF00817 impB/mucB/samB family V428_RS06135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS06135 PF00672 HAMP domain V428_RS06140 PF03466 LysR substrate binding domain V428_RS06140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS06150 PF04241 Protein of unknown function (DUF423) V428_RS06155 PF18125 RlmM ferredoxin-like domain V428_RS06155 PF01728 FtsJ-like methyltransferase V428_RS06165 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_RS06165 PF18324 Hypothetical protein TT1725 V428_RS06170 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V428_RS06170 PF01367 5'-3' exonuclease, C-terminal SAM fold V428_RS06175 PF11892 Domain of unknown function (DUF3412) V428_RS06175 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases V428_RS06175 PF03641 Possible lysine decarboxylase V428_RS06180 PF00990 Diguanylate cyclase, GGDEF domain V428_RS06190 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term V428_RS06190 PF14489 QueF-like protein V428_RS06195 PF07348 Syd protein (SUKH-2) V428_RS06200 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) V428_RS06225 PF04287 tRNA pseudouridine synthase C V428_RS06230 PF00849 RNA pseudouridylate synthase V428_RS06235 PF00258 Flavodoxin V428_RS06240 PF02264 LamB porin V428_RS06245 PF07148 Maltose operon periplasmic protein precursor (MalM) V428_RS06250 PF02378 Phosphotransferase system, EIIC V428_RS06250 PF00367 phosphotransferase system, EIIB V428_RS06255 PF11944 Protein of unknown function (DUF3461) V428_RS06260 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS06260 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal V428_RS06260 PF14602 Hexapeptide repeat of succinyl-transferase V428_RS06265 PF01966 HD domain V428_RS06265 PF01909 Nucleotidyltransferase domain V428_RS06265 PF08335 GlnD PII-uridylyltransferase V428_RS06265 PF01842 ACT domain V428_RS06270 PF00557 Metallopeptidase family M24 V428_RS06275 PF00318 Ribosomal protein S2 V428_RS06280 PF00889 Elongation factor TS V428_RS06285 PF00696 Amino acid kinase family V428_RS06290 PF01765 Ribosome recycling factor V428_RS06295 PF01255 Putative undecaprenyl diphosphate synthase V428_RS06305 PF13288 DXP reductoisomerase C-terminal domain V428_RS06305 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase V428_RS06305 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain V428_RS06310 PF17820 PDZ domain V428_RS06310 PF02163 Peptidase family M50 V428_RS06315 PF07244 Surface antigen variable number repeat V428_RS06315 PF01103 Surface antigen V428_RS06320 PF03938 Outer membrane protein (OmpH-like) V428_RS06325 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V428_RS06325 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS06330 PF07977 FabA-like domain V428_RS06335 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V428_RS06335 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS06340 PF02684 Lipid-A-disaccharide synthetase V428_RS06345 PF01351 Ribonuclease HII V428_RS06350 PF07733 Bacterial DNA polymerase III alpha NTPase domain V428_RS06350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain V428_RS06350 PF01336 OB-fold nucleic acid binding domain V428_RS06350 PF14579 Helix-hairpin-helix motif V428_RS06350 PF02811 PHP domain V428_RS06355 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit V428_RS06360 PF00486 Transcriptional regulatory protein, C terminal V428_RS06360 PF18500 CadC C-terminal domain 1 V428_RS06365 PF13520 Amino acid permease V428_RS06370 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V428_RS06370 PF01276 Orn/Lys/Arg decarboxylase, major domain V428_RS06370 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V428_RS06375 PF08543 Phosphomethylpyrimidine kinase V428_RS06385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS06385 PF03466 LysR substrate binding domain V428_RS06395 PF12706 Beta-lactamase superfamily domain V428_RS06400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS06400 PF03466 LysR substrate binding domain V428_RS06405 PF13520 Amino acid permease V428_RS06410 PF13302 Acetyltransferase (GNAT) domain V428_RS06415 PF16326 ABC transporter C-terminal domain V428_RS06415 PF12848 ABC transporter V428_RS06415 PF00005 ABC transporter V428_RS06425 PF01431 Peptidase family M13 V428_RS06425 PF05649 Peptidase family M13 V428_RS06430 PF01171 PP-loop family V428_RS06430 PF09179 TilS substrate binding domain V428_RS06430 PF11734 TilS substrate C-terminal domain V428_RS06435 PF00990 Diguanylate cyclase, GGDEF domain V428_RS06440 PF02254 TrkA-N domain V428_RS06440 PF00999 Sodium/hydrogen exchanger family V428_RS06440 PF02080 TrkA-C domain V428_RS06460 PF00072 Response regulator receiver domain V428_RS06460 PF00196 Bacterial regulatory proteins, luxR family V428_RS06470 PF00128 Alpha amylase, catalytic domain V428_RS06485 PF00535 Glycosyl transferase family 2 V428_RS06500 PF03734 L,D-transpeptidase catalytic domain V428_RS06500 PF01471 Putative peptidoglycan binding domain V428_RS06505 PF05951 Bacterial protein of unknown function (DUF882) V428_RS06515 PF03458 UPF0126 domain V428_RS06525 PF06470 SMC proteins Flexible Hinge Domain V428_RS06525 PF02463 RecF/RecN/SMC N terminal domain V428_RS06530 PF04354 ZipA, C-terminal FtsZ-binding domain V428_RS06535 PF00533 BRCA1 C Terminus (BRCT) domain V428_RS06535 PF01653 NAD-dependent DNA ligase adenylation domain V428_RS06535 PF03120 NAD-dependent DNA ligase OB-fold domain V428_RS06535 PF03119 NAD-dependent DNA ligase C4 zinc finger domain V428_RS06535 PF12826 Helix-hairpin-helix motif V428_RS06545 PF03477 ATP cone domain V428_RS06545 PF13597 Anaerobic ribonucleoside-triphosphate reductase V428_RS06580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS06580 PF00529 HlyD membrane-fusion protein of T1SS V428_RS06585 PF01047 MarR family V428_RS06590 PF03390 2-hydroxycarboxylate transporter family V428_RS06595 PF00390 Malic enzyme, N-terminal domain V428_RS06595 PF03949 Malic enzyme, NAD binding domain V428_RS06600 PF17203 Single cache domain 3 V428_RS06600 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V428_RS06600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS06600 PF00989 PAS fold V428_RS06605 PF00072 Response regulator receiver domain V428_RS06605 PF12431 Transcriptional regulator V428_RS06610 PF00892 EamA-like transporter family V428_RS06620 PF00171 Aldehyde dehydrogenase family V428_RS06625 PF01590 GAF domain V428_RS06625 PF02954 Bacterial regulatory protein, Fis family V428_RS06625 PF00158 Sigma-54 interaction domain V428_RS06630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_RS06630 PF02770 Acyl-CoA dehydrogenase, middle domain V428_RS06630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_RS06635 PF02515 CoA-transferase family III V428_RS06640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_RS06645 PF00486 Transcriptional regulatory protein, C terminal V428_RS06645 PF00072 Response regulator receiver domain V428_RS06650 PF00512 His Kinase A (phospho-acceptor) domain V428_RS06650 PF00989 PAS fold V428_RS06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS06650 PF11808 Phosphate regulon sensor protein PhoR V428_RS06655 PF12849 PBP superfamily domain V428_RS06660 PF01435 Peptidase family M48 V428_RS06670 PF00480 ROK family V428_RS06675 PF03932 CutC family V428_RS06680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_RS06680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_RS06685 PF00005 ABC transporter V428_RS06705 PF00293 NUDIX domain V428_RS06715 PF08534 Redoxin V428_RS06720 PF01699 Sodium/calcium exchanger protein V428_RS06725 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V428_RS06725 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_RS06730 PF01235 Sodium:alanine symporter family V428_RS06740 PF00860 Permease family V428_RS06745 PF00990 Diguanylate cyclase, GGDEF domain V428_RS06745 PF00072 Response regulator receiver domain V428_RS06750 PF10692 Protein of unknown function (DUF2498) V428_RS06755 PF01554 MatE V428_RS06760 PF12833 Helix-turn-helix domain V428_RS06765 PF03949 Malic enzyme, NAD binding domain V428_RS06765 PF00390 Malic enzyme, N-terminal domain V428_RS06770 PF00691 OmpA family V428_RS06770 PF01389 OmpA-like transmembrane domain V428_RS06775 PF00691 OmpA family V428_RS06775 PF01389 OmpA-like transmembrane domain V428_RS06780 PF01389 OmpA-like transmembrane domain V428_RS06780 PF00691 OmpA family V428_RS06795 PF00209 Sodium:neurotransmitter symporter family V428_RS06800 PF01734 Patatin-like phospholipase V428_RS06805 PF00990 Diguanylate cyclase, GGDEF domain V428_RS06810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS06810 PF00529 HlyD membrane-fusion protein of T1SS V428_RS06815 PF00873 AcrB/AcrD/AcrF family V428_RS06825 PF04055 Radical SAM superfamily V428_RS06825 PF08497 Radical SAM N-terminal V428_RS06825 PF11842 Domain of unknown function (DUF3362) V428_RS06845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_RS06850 PF02075 Crossover junction endodeoxyribonuclease RuvC V428_RS06855 PF00230 Major intrinsic protein V428_RS06860 PF10145 Phage-related minor tail protein V428_RS06860 PF01551 Peptidase family M23 V428_RS06860 PF01464 Transglycosylase SLT domain V428_RS06865 PF00128 Alpha amylase, catalytic domain V428_RS06870 PF01551 Peptidase family M23 V428_RS06885 PF13396 Phospholipase_D-nuclease N-terminal V428_RS06885 PF13091 PLD-like domain V428_RS06895 PF00551 Formyl transferase V428_RS06895 PF01842 ACT domain V428_RS06900 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V428_RS06910 PF00085 Thioredoxin V428_RS06915 PF01648 4'-phosphopantetheinyl transferase superfamily V428_RS06920 PF00877 NlpC/P60 family V428_RS06925 PF05971 RNA methyltransferase V428_RS06930 PF01575 MaoC like domain V428_RS06940 PF01476 LysM domain V428_RS06940 PF17969 L,D-transpeptidase C-terminal domain V428_RS06940 PF03734 L,D-transpeptidase catalytic domain V428_RS06950 PF00271 Helicase conserved C-terminal domain V428_RS06950 PF00176 SNF2 family N-terminal domain V428_RS07010 PF04002 RadC-like JAB domain V428_RS07080 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_RS07090 PF13356 Arm DNA-binding domain V428_RS07090 PF00589 Phage integrase family V428_RS07095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS07100 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS07105 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS07105 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_RS07110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS07110 PF00005 ABC transporter V428_RS07115 PF00465 Iron-containing alcohol dehydrogenase V428_RS07120 PF05025 RbsD / FucU transport protein family V428_RS07130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V428_RS07130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_RS07135 PF07882 L-fucose isomerase, second N-terminal domain V428_RS07135 PF07881 L-fucose isomerase, first N-terminal domain V428_RS07135 PF02952 L-fucose isomerase, C-terminal domain V428_RS07140 PF07690 Major Facilitator Superfamily V428_RS07145 PF08220 DeoR-like helix-turn-helix domain V428_RS07145 PF00455 DeoR C terminal sensor domain V428_RS07150 PF00141 Peroxidase V428_RS07155 PF00701 Dihydrodipicolinate synthetase family V428_RS07160 PF01418 Helix-turn-helix domain, rpiR family V428_RS07160 PF01380 SIS domain V428_RS07165 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase V428_RS07170 PF00480 ROK family V428_RS07175 PF00474 Sodium:solute symporter family V428_RS07180 PF04074 YhcH/YjgK/YiaL V428_RS07210 PF00893 Small Multidrug Resistance protein V428_RS07215 PF00893 Small Multidrug Resistance protein V428_RS07225 PF06130 Phosphate propanoyltransferase V428_RS07230 PF00936 BMC domain V428_RS07235 PF04055 Radical SAM superfamily V428_RS07235 PF13187 4Fe-4S dicluster domain V428_RS07240 PF01228 Glycine radical V428_RS07240 PF02901 Pyruvate formate lyase-like V428_RS07245 PF00171 Aldehyde dehydrogenase family V428_RS07245 PF00465 Iron-containing alcohol dehydrogenase V428_RS07255 PF00465 Iron-containing alcohol dehydrogenase V428_RS07255 PF00171 Aldehyde dehydrogenase family V428_RS07260 PF00936 BMC domain V428_RS07265 PF00936 BMC domain V428_RS07270 PF00936 BMC domain V428_RS07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS07290 PF03466 LysR substrate binding domain V428_RS07295 PF02634 FdhD/NarQ family V428_RS07300 PF00384 Molybdopterin oxidoreductase V428_RS07315 PF00440 Bacterial regulatory proteins, tetR family V428_RS07320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_RS07320 PF02770 Acyl-CoA dehydrogenase, middle domain V428_RS07320 PF09317 Domain of unknown function (DUF1974) V428_RS07320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_RS07325 PF00873 AcrB/AcrD/AcrF family V428_RS07335 PF02887 Pyruvate kinase, alpha/beta domain V428_RS07335 PF00224 Pyruvate kinase, barrel domain V428_RS07340 PF01418 Helix-turn-helix domain, rpiR family V428_RS07340 PF01380 SIS domain V428_RS07345 PF02685 Glucokinase V428_RS07350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS07355 PF00072 Response regulator receiver domain V428_RS07355 PF00486 Transcriptional regulatory protein, C terminal V428_RS07360 PF03412 Peptidase C39 family V428_RS07360 PF00664 ABC transporter transmembrane region V428_RS07360 PF00005 ABC transporter V428_RS07370 PF00664 ABC transporter transmembrane region V428_RS07370 PF03412 Peptidase C39 family V428_RS07370 PF00005 ABC transporter V428_RS07385 PF16671 Actin cross-linking domain V428_RS07385 PF11713 Peptidase C80 family V428_RS07385 PF11647 Membrane Localization Domain V428_RS07385 PF12146 Serine aminopeptidase, S33 V428_RS07385 PF07634 RtxA repeat V428_RS07395 PF18693 TRAM domain V428_RS07395 PF00919 Uncharacterized protein family UPF0004 V428_RS07395 PF04055 Radical SAM superfamily V428_RS07400 PF00072 Response regulator receiver domain V428_RS07410 PF02049 Flagellar hook-basal body complex protein FliE V428_RS07415 PF01514 Secretory protein of YscJ/FliF family V428_RS07415 PF08345 Flagellar M-ring protein C-terminal V428_RS07420 PF14842 FliG N-terminal domain V428_RS07420 PF14841 FliG middle domain V428_RS07420 PF01706 FliG C-terminal domain V428_RS07430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_RS07430 PF18269 T3SS EscN ATPase C-terminal domain V428_RS07450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V428_RS07450 PF02154 Flagellar motor switch protein FliM V428_RS07455 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V428_RS07460 PF04347 Flagellar biosynthesis protein, FliO V428_RS07465 PF00813 FliP family V428_RS07470 PF01313 Bacterial export proteins, family 3 V428_RS07475 PF01311 Bacterial export proteins, family 1 V428_RS07480 PF01312 FlhB HrpN YscU SpaS Family V428_RS07485 PF00771 FHIPEP family V428_RS07490 PF00448 SRP54-type protein, GTPase domain V428_RS07495 PF10609 NUBPL iron-transfer P-loop NTPase V428_RS07500 PF04542 Sigma-70 region 2 V428_RS07500 PF04545 Sigma-70, region 4 V428_RS07500 PF04539 Sigma-70 region 3 V428_RS07505 PF00072 Response regulator receiver domain V428_RS07510 PF04344 Chemotaxis phosphatase, CheZ V428_RS07515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS07515 PF00072 Response regulator receiver domain V428_RS07515 PF02895 Signal transducing histidine kinase, homodimeric domain V428_RS07515 PF01627 Hpt domain V428_RS07515 PF01584 CheW-like domain V428_RS07520 PF01339 CheB methylesterase V428_RS07520 PF00072 Response regulator receiver domain V428_RS07525 PF01618 MotA/TolQ/ExbB proton channel family V428_RS07530 PF00691 OmpA family V428_RS07530 PF13677 Membrane MotB of proton-channel complex MotA/MotB V428_RS07535 PF13614 AAA domain V428_RS07545 PF01584 CheW-like domain V428_RS07555 PF00005 ABC transporter V428_RS07560 PF03379 CcmB protein V428_RS07565 PF01578 Cytochrome C assembly protein V428_RS07570 PF04995 Heme exporter protein D (CcmD) V428_RS07575 PF03100 CcmE V428_RS07580 PF01578 Cytochrome C assembly protein V428_RS07580 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V428_RS07585 PF08534 Redoxin V428_RS07590 PF03918 Cytochrome C biogenesis protein V428_RS07595 PF03918 Cytochrome C biogenesis protein V428_RS07600 PF04333 MlaA lipoprotein V428_RS07605 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V428_RS07605 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V428_RS07610 PF00462 Glutaredoxin V428_RS07615 PF01189 16S rRNA methyltransferase RsmB/F V428_RS07615 PF01029 NusB family V428_RS07630 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region V428_RS07630 PF01243 Pyridoxamine 5'-phosphate oxidase V428_RS07635 PF02798 Glutathione S-transferase, N-terminal domain V428_RS07645 PF13508 Acetyltransferase (GNAT) domain V428_RS07655 PF08007 Cupin superfamily protein V428_RS07660 PF00206 Lyase V428_RS07660 PF08328 Adenylosuccinate lyase C-terminal V428_RS07665 PF04356 Protein of unknown function (DUF489) V428_RS07675 PF00293 NUDIX domain V428_RS07680 PF00849 RNA pseudouridylate synthase V428_RS07690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_RS07695 PF07690 Major Facilitator Superfamily V428_RS07700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_RS07700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_RS07700 PF02378 Phosphotransferase system, EIIC V428_RS07720 PF00583 Acetyltransferase (GNAT) family V428_RS07735 PF00356 Bacterial regulatory proteins, lacI family V428_RS07735 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_RS07740 PF00367 phosphotransferase system, EIIB V428_RS07740 PF02378 Phosphotransferase system, EIIC V428_RS07745 PF00155 Aminotransferase class I and II V428_RS07765 PF01238 Phosphomannose isomerase type I V428_RS07770 PF12833 Helix-turn-helix domain V428_RS07775 PF00180 Isocitrate/isopropylmalate dehydrogenase V428_RS07780 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS07785 PF02447 GntP family permease V428_RS07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS07790 PF03466 LysR substrate binding domain V428_RS07820 PF01420 Type I restriction modification DNA specificity domain V428_RS07825 PF02384 N-6 DNA Methylase V428_RS07825 PF12161 HsdM N-terminal domain V428_RS07830 PF04851 Type III restriction enzyme, res subunit V428_RS07830 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) V428_RS07830 PF00271 Helicase conserved C-terminal domain V428_RS07830 PF08463 EcoEI R protein C-terminal V428_RS07895 PF08765 Mor transcription activator family V428_RS07935 PF08461 Ribonuclease R winged-helix domain V428_RS07940 PF11985 Protein of unknown function (DUF3486) V428_RS07945 PF03237 Terminase-like family V428_RS07950 PF06074 Protein of unknown function (DUF935) V428_RS07970 PF10123 Mu-like prophage I protein V428_RS07975 PF10124 Mu-like prophage major head subunit gpT V428_RS08050 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) V428_RS08050 PF04851 Type III restriction enzyme, res subunit V428_RS08050 PF08463 EcoEI R protein C-terminal V428_RS08050 PF00271 Helicase conserved C-terminal domain V428_RS08055 PF01668 SmpB protein V428_RS08060 PF03364 Polyketide cyclase / dehydrase and lipid transport V428_RS08065 PF03658 RnfH family Ubiquitin V428_RS08070 PF13460 NAD(P)H-binding V428_RS08075 PF04355 SmpA / OmlA family V428_RS08105 PF04972 BON domain V428_RS08105 PF13629 Pilus formation protein N terminal region V428_RS08105 PF00263 Bacterial type II and III secretion system protein V428_RS08120 PF00437 Type II/IV secretion system protein V428_RS08155 PF00465 Iron-containing alcohol dehydrogenase V428_RS08160 PF01048 Phosphorylase superfamily V428_RS08165 PF00849 RNA pseudouridylate synthase V428_RS08170 PF01156 Inosine-uridine preferring nucleoside hydrolase V428_RS08185 PF07509 Protein of unknown function (DUF1523) V428_RS08190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS08190 PF00672 HAMP domain V428_RS08195 PF01810 LysE type translocator V428_RS08205 PF02080 TrkA-C domain V428_RS08205 PF00999 Sodium/hydrogen exchanger family V428_RS08205 PF03471 Transporter associated domain V428_RS08215 PF00999 Sodium/hydrogen exchanger family V428_RS08215 PF03471 Transporter associated domain V428_RS08215 PF02080 TrkA-C domain V428_RS08220 PF02557 D-alanyl-D-alanine carboxypeptidase V428_RS08225 PF07687 Peptidase dimerisation domain V428_RS08225 PF01546 Peptidase family M20/M25/M40 V428_RS08230 PF03960 ArsC family V428_RS08235 PF03466 LysR substrate binding domain V428_RS08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS08245 PF03606 C4-dicarboxylate anaerobic carrier V428_RS08250 PF01546 Peptidase family M20/M25/M40 V428_RS08250 PF07687 Peptidase dimerisation domain V428_RS08260 PF03605 Anaerobic c4-dicarboxylate membrane transporter V428_RS08265 PF01336 OB-fold nucleic acid binding domain V428_RS08265 PF00152 tRNA synthetases class II (D, K and N) V428_RS08280 PF00202 Aminotransferase class-III V428_RS08285 PF06968 Biotin and Thiamin Synthesis associated domain V428_RS08285 PF04055 Radical SAM superfamily V428_RS08290 PF00155 Aminotransferase class I and II V428_RS08295 PF12697 Alpha/beta hydrolase family V428_RS08295 PF08241 Methyltransferase domain V428_RS08305 PF01435 Peptidase family M48 V428_RS08310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS08310 PF08447 PAS fold V428_RS08310 PF13426 PAS domain V428_RS08315 PF03476 MOSC N-terminal beta barrel domain V428_RS08315 PF03473 MOSC domain V428_RS08315 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_RS08315 PF03476 MOSC N-terminal beta barrel domain V428_RS08315 PF03473 MOSC domain V428_RS08315 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_RS08320 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region V428_RS08320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_RS08320 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS08325 PF10371 Domain of unknown function V428_RS08325 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V428_RS08325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_RS08325 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V428_RS08325 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V428_RS08330 PF01804 Penicillin amidase V428_RS08350 PF01554 MatE V428_RS08370 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS08380 PF00465 Iron-containing alcohol dehydrogenase V428_RS08390 PF08359 YsiA-like protein, C-terminal region V428_RS08390 PF00440 Bacterial regulatory proteins, tetR family V428_RS08395 PF00171 Aldehyde dehydrogenase family V428_RS08405 PF00877 NlpC/P60 family V428_RS08410 PF07968 Leukocidin/Hemolysin toxin family V428_RS08410 PF12563 Hemolytic toxin N terminal V428_RS08415 PF03466 LysR substrate binding domain V428_RS08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS08420 PF10417 C-terminal domain of 1-Cys peroxiredoxin V428_RS08420 PF00578 AhpC/TSA family V428_RS08440 PF08003 Protein of unknown function (DUF1698) V428_RS08445 PF13649 Methyltransferase domain V428_RS08450 PF01904 Protein of unknown function DUF72 V428_RS08455 PF00152 tRNA synthetases class II (D, K and N) V428_RS08455 PF02938 GAD domain V428_RS08455 PF01336 OB-fold nucleic acid binding domain V428_RS08460 PF01709 Transcriptional regulator V428_RS08465 PF00884 Sulfatase V428_RS08465 PF08019 Phosphoethanolamine transferase EptA/EptB V428_RS08470 PF01047 MarR family V428_RS08470 PF00480 ROK family V428_RS08475 PF01979 Amidohydrolase family V428_RS08480 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V428_RS08485 PF00367 phosphotransferase system, EIIB V428_RS08485 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V428_RS08485 PF02378 Phosphotransferase system, EIIC V428_RS08490 PF02838 Glycosyl hydrolase family 20, domain 2 V428_RS08490 PF03173 Putative carbohydrate binding domain V428_RS08490 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain V428_RS08490 PF00728 Glycosyl hydrolase family 20, catalytic domain V428_RS08495 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain V428_RS08495 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_RS08500 PF01475 Ferric uptake regulator family V428_RS08510 PF00258 Flavodoxin V428_RS08515 PF01402 Ribbon-helix-helix protein, copG family V428_RS08525 PF12697 Alpha/beta hydrolase family V428_RS08530 PF03925 SeqA protein C-terminal domain V428_RS08530 PF17206 SeqA protein N-terminal domain V428_RS08535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V428_RS08535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V428_RS08535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V428_RS08535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V428_RS08545 PF01047 MarR family V428_RS08550 PF13406 Transglycosylase SLT domain V428_RS08555 PF01066 CDP-alcohol phosphatidyltransferase V428_RS08560 PF00005 ABC transporter V428_RS08570 PF13416 Bacterial extracellular solute-binding protein V428_RS08575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_RS08575 PF00403 Heavy-metal-associated domain V428_RS08575 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS08580 PF02627 Carboxymuconolactone decarboxylase family V428_RS08590 PF01625 Peptide methionine sulfoxide reductase V428_RS08605 PF17243 POTRA domain TamA domain 1 V428_RS08605 PF07244 Surface antigen variable number repeat V428_RS08605 PF01103 Surface antigen V428_RS08610 PF04357 TamB, inner membrane protein subunit of TAM complex V428_RS08630 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V428_RS08635 PF00990 Diguanylate cyclase, GGDEF domain V428_RS08635 PF00563 EAL domain V428_RS08635 PF03707 Bacterial signalling protein N terminal repeat V428_RS08640 PF01464 Transglycosylase SLT domain V428_RS08640 PF14718 Soluble lytic murein transglycosylase L domain V428_RS08645 PF00356 Bacterial regulatory proteins, lacI family V428_RS08655 PF03061 Thioesterase superfamily V428_RS08665 PF03372 Endonuclease/Exonuclease/phosphatase family V428_RS08670 PF01464 Transglycosylase SLT domain V428_RS08670 PF01476 LysM domain V428_RS08675 PF16123 Hydroxyacylglutathione hydrolase C-terminus V428_RS08675 PF00753 Metallo-beta-lactamase superfamily V428_RS08680 PF08241 Methyltransferase domain V428_RS08685 PF00075 RNase H V428_RS08690 PF00929 Exonuclease V428_RS08700 PF11849 Domain of unknown function (DUF3369) V428_RS08705 PF09317 Domain of unknown function (DUF1974) V428_RS08705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_RS08705 PF02770 Acyl-CoA dehydrogenase, middle domain V428_RS08705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_RS08710 PF13580 SIS domain V428_RS08715 PF13230 Glutamine amidotransferases class-II V428_RS08725 PF01933 Uncharacterised protein family UPF0052 V428_RS08735 PF01627 Hpt domain V428_RS08735 PF00672 HAMP domain V428_RS08735 PF17149 Periplasmic sensor domain found in signal transduction proteins V428_RS08735 PF00072 Response regulator receiver domain V428_RS08735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS08735 PF00512 His Kinase A (phospho-acceptor) domain V428_RS08745 PF00196 Bacterial regulatory proteins, luxR family V428_RS08745 PF00072 Response regulator receiver domain V428_RS08750 PF00672 HAMP domain V428_RS08750 PF07730 Histidine kinase V428_RS08750 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term V428_RS08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS08755 PF06463 Molybdenum Cofactor Synthesis C V428_RS08755 PF04055 Radical SAM superfamily V428_RS08760 PF00037 4Fe-4S binding domain V428_RS08760 PF13187 4Fe-4S dicluster domain V428_RS08760 PF12800 4Fe-4S binding domain V428_RS08770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS08770 PF01568 Molydopterin dinucleotide binding domain V428_RS08770 PF10518 TAT (twin-arginine translocation) pathway signal sequence V428_RS08770 PF00384 Molybdopterin oxidoreductase V428_RS08775 PF12800 4Fe-4S binding domain V428_RS08775 PF12838 4Fe-4S dicluster domain V428_RS08780 PF13237 4Fe-4S dicluster domain V428_RS08780 PF12801 4Fe-4S binding domain V428_RS08785 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) V428_RS08790 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_RS08795 PF00994 Probable molybdopterin binding domain V428_RS08800 PF01967 MoaC family V428_RS08805 PF02597 ThiS family V428_RS08810 PF02391 MoaE protein V428_RS08820 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS08825 PF00005 ABC transporter V428_RS08825 PF03459 TOBE domain V428_RS08830 PF00561 alpha/beta hydrolase fold V428_RS08835 PF00899 ThiF family V428_RS08840 PF03453 MoeA N-terminal region (domain I and II) V428_RS08840 PF00994 Probable molybdopterin binding domain V428_RS08840 PF03454 MoeA C-terminal region (domain IV) V428_RS08845 PF01227 GTP cyclohydrolase I V428_RS08850 PF17200 Single Cache domain 2 V428_RS08850 PF00672 HAMP domain V428_RS08850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS08855 PF01268 Formate--tetrahydrofolate ligase V428_RS08865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS08865 PF03466 LysR substrate binding domain V428_RS08870 PF04264 YceI-like domain V428_RS08895 PF07687 Peptidase dimerisation domain V428_RS08895 PF01546 Peptidase family M20/M25/M40 V428_RS08900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V428_RS08900 PF17810 Arginine decarboxylase helical bundle domain V428_RS08900 PF17944 Arginine decarboxylase C-terminal helical extension V428_RS08915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS08915 PF00672 HAMP domain V428_RS08925 PF01042 Endoribonuclease L-PSP V428_RS08930 PF03313 Serine dehydratase alpha chain V428_RS08935 PF13309 HTH domain V428_RS08935 PF08348 YheO-like PAS domain V428_RS08940 PF00300 Histidine phosphatase superfamily (branch 1) V428_RS08945 PF00271 Helicase conserved C-terminal domain V428_RS08945 PF04851 Type III restriction enzyme, res subunit V428_RS08965 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain V428_RS08965 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase V428_RS08970 PF01479 S4 domain V428_RS08970 PF00849 RNA pseudouridylate synthase V428_RS08975 PF07690 Major Facilitator Superfamily V428_RS08985 PF03466 LysR substrate binding domain V428_RS08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS08990 PF07690 Major Facilitator Superfamily V428_RS09010 PF04391 Protein of unknown function (DUF533) V428_RS09020 PF00392 Bacterial regulatory proteins, gntR family V428_RS09020 PF00155 Aminotransferase class I and II V428_RS09025 PF01654 Cytochrome bd terminal oxidase subunit I V428_RS09030 PF02322 Cytochrome bd terminal oxidase subunit II V428_RS09040 PF07690 Major Facilitator Superfamily V428_RS09045 PF00248 Aldo/keto reductase family V428_RS09065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS09065 PF03466 LysR substrate binding domain V428_RS09070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V428_RS09070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_RS09075 PF00230 Major intrinsic protein V428_RS09080 PF07690 Major Facilitator Superfamily V428_RS09085 PF08220 DeoR-like helix-turn-helix domain V428_RS09085 PF00455 DeoR C terminal sensor domain V428_RS09090 PF01266 FAD dependent oxidoreductase V428_RS09090 PF16901 C-terminal domain of alpha-glycerophosphate oxidase V428_RS09095 PF03009 Glycerophosphoryl diester phosphodiesterase family V428_RS09100 PF00793 DAHP synthetase I family V428_RS09105 PF02153 Prephenate dehydrogenase V428_RS09105 PF01817 Chorismate mutase type II V428_RS09110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS09110 PF03466 LysR substrate binding domain V428_RS09115 PF04219 Protein of unknown function, DUF V428_RS09120 PF03974 Ecotin V428_RS09140 PF00326 Prolyl oligopeptidase family V428_RS09140 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V428_RS09145 PF00593 TonB dependent receptor V428_RS09145 PF07715 TonB-dependent Receptor Plug Domain V428_RS09150 PF11893 Domain of unknown function (DUF3413) V428_RS09150 PF00884 Sulfatase V428_RS09155 PF07208 Protein of unknown function (DUF1414) V428_RS09160 PF04245 37-kD nucleoid-associated bacterial protein V428_RS09165 PF01547 Bacterial extracellular solute-binding protein V428_RS09170 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS09170 PF14785 Maltose transport system permease protein MalF P2 domain V428_RS09175 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS09180 PF00005 ABC transporter V428_RS09180 PF08402 TOBE domain V428_RS09185 PF03976 Polyphosphate kinase 2 (PPK2) V428_RS09190 PF00561 alpha/beta hydrolase fold V428_RS09200 PF01594 AI-2E family transporter V428_RS09205 PF01206 Sulfurtransferase TusA V428_RS09210 PF13181 Tetratricopeptide repeat V428_RS09210 PF01435 Peptidase family M48 V428_RS09215 PF00578 AhpC/TSA family V428_RS09220 PF03960 ArsC family V428_RS09235 PF04336 Acyl carrier protein phosphodiesterase V428_RS09240 PF01979 Amidohydrolase family V428_RS09245 PF03956 Lysine exporter LysO V428_RS09250 PF00005 ABC transporter V428_RS09255 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS09260 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS09265 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS09275 PF04055 Radical SAM superfamily V428_RS09280 PF03707 Bacterial signalling protein N terminal repeat V428_RS09280 PF00990 Diguanylate cyclase, GGDEF domain V428_RS09280 PF00563 EAL domain V428_RS09285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_RS09285 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS09300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS09300 PF00529 HlyD membrane-fusion protein of T1SS V428_RS09305 PF02321 Outer membrane efflux protein V428_RS09310 PF01594 AI-2E family transporter V428_RS09315 PF07687 Peptidase dimerisation domain V428_RS09315 PF01546 Peptidase family M20/M25/M40 V428_RS09320 PF01835 MG2 domain V428_RS09320 PF00207 Alpha-2-macroglobulin family V428_RS09320 PF07703 Alpha-2-macroglobulin bait region domain V428_RS09320 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain V428_RS09320 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain V428_RS09320 PF11974 Bacterial alpha-2-macroglobulin MG3 domain V428_RS09320 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain V428_RS09320 PF17962 Bacterial macroglobulin domain 6 V428_RS09320 PF07678 A-macroglobulin TED domain V428_RS09325 PF06832 Penicillin-Binding Protein C-terminus Family V428_RS09325 PF00912 Transglycosylase V428_RS09325 PF00905 Penicillin binding protein transpeptidase domain V428_RS09335 PF02568 Thiamine biosynthesis protein (ThiI) V428_RS09335 PF02926 THUMP domain V428_RS09345 PF03458 UPF0126 domain V428_RS09350 PF07196 Flagellin hook IN motif V428_RS09350 PF00669 Bacterial flagellin N-terminal helical region V428_RS09350 PF00700 Bacterial flagellin C-terminal helical region V428_RS09355 PF07196 Flagellin hook IN motif V428_RS09355 PF00700 Bacterial flagellin C-terminal helical region V428_RS09355 PF00669 Bacterial flagellin N-terminal helical region V428_RS09360 PF00665 Integrase core domain V428_RS09365 PF01527 Transposase V428_RS09370 PF00700 Bacterial flagellin C-terminal helical region V428_RS09370 PF00669 Bacterial flagellin N-terminal helical region V428_RS09380 PF07195 Flagellar hook-associated protein 2 C-terminus V428_RS09380 PF07196 Flagellin hook IN motif V428_RS09380 PF02465 Flagellar hook-associated protein 2 N-terminus V428_RS09385 PF02561 Flagellar protein FliS V428_RS09405 PF03102 NeuB family V428_RS09405 PF08666 SAF domain V428_RS09415 PF00202 Aminotransferase class-III V428_RS09430 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_RS09435 PF02719 Polysaccharide biosynthesis protein V428_RS09440 PF01497 Periplasmic binding protein V428_RS09450 PF01048 Phosphorylase superfamily V428_RS09460 PF02535 ZIP Zinc transporter V428_RS09465 PF00672 HAMP domain V428_RS09465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS09470 PF00459 Inositol monophosphatase family V428_RS09480 PF00043 Glutathione S-transferase, C-terminal domain V428_RS09480 PF02798 Glutathione S-transferase, N-terminal domain V428_RS09485 PF07690 Major Facilitator Superfamily V428_RS09490 PF05164 Cell division protein ZapA V428_RS09495 PF03695 Uncharacterised protein family (UPF0149) V428_RS09500 PF01494 FAD binding domain V428_RS09505 PF01494 FAD binding domain V428_RS09510 PF01571 Aminomethyltransferase folate-binding domain V428_RS09510 PF08669 Glycine cleavage T-protein C-terminal barrel domain V428_RS09515 PF01597 Glycine cleavage H-protein V428_RS09520 PF02347 Glycine cleavage system P-protein V428_RS09525 PF01022 Bacterial regulatory protein, arsR family V428_RS09530 PF01758 Sodium Bile acid symporter family V428_RS09535 PF03960 ArsC family V428_RS09540 PF08241 Methyltransferase domain V428_RS09550 PF07690 Major Facilitator Superfamily V428_RS09555 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS09555 PF13192 Thioredoxin domain V428_RS09560 PF00578 AhpC/TSA family V428_RS09560 PF10417 C-terminal domain of 1-Cys peroxiredoxin V428_RS09565 PF00571 CBS domain V428_RS09570 PF02547 Queuosine biosynthesis protein V428_RS09575 PF01702 Queuine tRNA-ribosyltransferase V428_RS09580 PF02699 Preprotein translocase subunit V428_RS09585 PF02355 Protein export membrane protein V428_RS09585 PF07549 SecD/SecF GG Motif V428_RS09585 PF13721 SecD export protein N-terminal TM region V428_RS09590 PF02355 Protein export membrane protein V428_RS09590 PF07549 SecD/SecF GG Motif V428_RS09600 PF07719 Tetratricopeptide repeat V428_RS09600 PF13181 Tetratricopeptide repeat V428_RS09605 PF01136 Peptidase family U32 V428_RS09610 PF01136 Peptidase family U32 V428_RS09615 PF02036 SCP-2 sterol transfer family V428_RS09625 PF00588 SpoU rRNA Methylase family V428_RS09630 PF02082 Transcriptional regulator V428_RS09635 PF00266 Aminotransferase class-V V428_RS09640 PF01592 NifU-like N terminal domain V428_RS09645 PF01521 Iron-sulphur cluster biosynthesis V428_RS09650 PF07743 HSCB C-terminal oligomerisation domain V428_RS09655 PF00012 Hsp70 protein V428_RS09660 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_RS09665 PF00883 Cytosol aminopeptidase family, catalytic domain V428_RS09665 PF12404 Peptidase V428_RS09670 PF12404 Peptidase V428_RS09670 PF00883 Cytosol aminopeptidase family, catalytic domain V428_RS09675 PF00334 Nucleoside diphosphate kinase V428_RS09680 PF04055 Radical SAM superfamily V428_RS09690 PF13464 Domain of unknown function (DUF4115) V428_RS09695 PF04551 GcpE protein V428_RS09700 PF13393 Histidyl-tRNA synthetase V428_RS09700 PF03129 Anticodon binding domain V428_RS09705 PF09976 Tetratricopeptide repeat-like domain V428_RS09710 PF13360 PQQ-like domain V428_RS09715 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal V428_RS09715 PF01926 50S ribosome-binding GTPase V428_RS09720 PF07191 zinc-ribbons V428_RS09725 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS09725 PF01464 Transglycosylase SLT domain V428_RS09730 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal V428_RS09730 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain V428_RS09730 PF02769 AIR synthase related protein, C-terminal domain V428_RS09740 PF00361 Proton-conducting membrane transporter V428_RS09745 PF00361 Proton-conducting membrane transporter V428_RS09750 PF00361 Proton-conducting membrane transporter V428_RS09750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V428_RS09755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L V428_RS09760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 V428_RS09765 PF12838 4Fe-4S dicluster domain V428_RS09770 PF00146 NADH dehydrogenase V428_RS09775 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V428_RS09775 PF00384 Molybdopterin oxidoreductase V428_RS09775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS09780 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V428_RS09780 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region V428_RS09790 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V428_RS09790 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V428_RS09795 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_RS09800 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 V428_RS09805 PF00691 OmpA family V428_RS09805 PF13677 Membrane MotB of proton-channel complex MotA/MotB V428_RS09810 PF01618 MotA/TolQ/ExbB proton channel family V428_RS09825 PF04536 TPM domain V428_RS09835 PF03411 Penicillin-insensitive murein endopeptidase V428_RS09845 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) V428_RS09850 PF00248 Aldo/keto reductase family V428_RS09865 PF01212 Beta-eliminating lyase V428_RS09875 PF00072 Response regulator receiver domain V428_RS09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS09880 PF03466 LysR substrate binding domain V428_RS09890 PF00563 EAL domain V428_RS09890 PF00990 Diguanylate cyclase, GGDEF domain V428_RS09890 PF03707 Bacterial signalling protein N terminal repeat V428_RS09890 PF13188 PAS domain V428_RS09895 PF00881 Nitroreductase family V428_RS09910 PF07690 Major Facilitator Superfamily V428_RS09915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS09915 PF03466 LysR substrate binding domain V428_RS09920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS09920 PF03466 LysR substrate binding domain V428_RS09925 PF00925 GTP cyclohydrolase II V428_RS09930 PF02224 Cytidylate kinase V428_RS09935 PF00575 S1 RNA binding domain V428_RS09940 PF00216 Bacterial DNA-binding protein V428_RS09950 PF18073 Rubredoxin metal binding domain V428_RS09955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V428_RS09970 PF06508 Queuosine biosynthesis protein QueC V428_RS09975 PF04055 Radical SAM superfamily V428_RS09980 PF12843 Putative quorum-sensing-regulated virulence factor V428_RS09985 PF01923 Cobalamin adenosyltransferase V428_RS09990 PF00816 H-NS histone family V428_RS09995 PF03553 Na+/H+ antiporter family V428_RS10000 PF00265 Thymidine kinase V428_RS10010 PF10722 Putative bacterial sensory transduction regulator V428_RS10025 PF04717 Type VI secretion system, phage-baseplate injector V428_RS10055 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain V428_RS10055 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain V428_RS10060 PF00313 'Cold-shock' DNA-binding domain V428_RS10065 PF02617 ATP-dependent Clp protease adaptor protein ClpS V428_RS10070 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS10070 PF07724 AAA domain (Cdc48 subfamily) V428_RS10070 PF02861 Clp amino terminal domain, pathogenicity island component V428_RS10070 PF17871 AAA lid domain V428_RS10070 PF10431 C-terminal, D2-small domain, of ClpB protein V428_RS10075 PF01176 Translation initiation factor 1A / IF-1 V428_RS10080 PF04377 Arginine-tRNA-protein transferase, C terminus V428_RS10080 PF04376 Arginine-tRNA-protein transferase, N terminus V428_RS10085 PF03588 Leucyl/phenylalanyl-tRNA protein transferase V428_RS10090 PF05433 Glycine zipper 2TM domain V428_RS10095 PF00990 Diguanylate cyclase, GGDEF domain V428_RS10095 PF17158 Membrane-associated sensor, integral membrane domain V428_RS10100 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS10105 PF01037 Lrp/AsnC ligand binding domain V428_RS10110 PF01580 FtsK/SpoIIIE family V428_RS10110 PF09397 Ftsk gamma domain V428_RS10110 PF13491 4TM region of DNA translocase FtsK/SpoIIIE V428_RS10110 PF17854 FtsK alpha domain V428_RS10115 PF03548 Outer membrane lipoprotein carrier protein LolA V428_RS10120 PF12002 MgsA AAA+ ATPase C terminal V428_RS10120 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS10120 PF16193 AAA C-terminal domain V428_RS10130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_RS10130 PF02403 Seryl-tRNA synthetase N-terminal domain V428_RS10135 PF02674 Colicin V production protein V428_RS10140 PF00156 Phosphoribosyl transferase domain V428_RS10145 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) V428_RS10150 PF00005 ABC transporter V428_RS10155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS10155 PF00005 ABC transporter V428_RS10160 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_RS10160 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS10165 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS10170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS10175 PF02954 Bacterial regulatory protein, Fis family V428_RS10175 PF00158 Sigma-54 interaction domain V428_RS10180 PF04012 PspA/IM30 family V428_RS10185 PF06667 Phage shock protein B V428_RS10195 PF04317 YcjX-like family, DUF463 V428_RS10200 PF05128 Domain of unknown function (DUF697) V428_RS10205 PF00351 Biopterin-dependent aromatic amino acid hydroxylase V428_RS10210 PF01329 Pterin 4 alpha carbinolamine dehydratase V428_RS10215 PF01329 Pterin 4 alpha carbinolamine dehydratase V428_RS10220 PF18024 Helix-turn-helix domain V428_RS10220 PF00158 Sigma-54 interaction domain V428_RS10225 PF13689 YfiR/HmsC-like V428_RS10230 PF00990 Diguanylate cyclase, GGDEF domain V428_RS10230 PF17152 Periplasmic sensor domain V428_RS10235 PF00691 OmpA family V428_RS10240 PF03741 Integral membrane protein TerC family V428_RS10250 PF08891 YfcL protein V428_RS10255 PF00501 AMP-binding enzyme V428_RS10260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V428_RS10260 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region V428_RS10265 PF04172 LrgB-like family V428_RS10270 PF03788 LrgA family V428_RS10285 PF08411 Exonuclease C-terminal V428_RS10285 PF00929 Exonuclease V428_RS10290 PF11762 L-arabinose isomerase C-terminal domain V428_RS10290 PF02610 L-arabinose isomerase V428_RS10295 PF00596 Class II Aldolase and Adducin N-terminal domain V428_RS10300 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V428_RS10305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_RS10310 PF00005 ABC transporter V428_RS10315 PF02653 Branched-chain amino acid transport system / permease component V428_RS10320 PF12833 Helix-turn-helix domain V428_RS10320 PF02311 AraC-like ligand binding domain V428_RS10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS10325 PF03466 LysR substrate binding domain V428_RS10330 PF02678 Pirin V428_RS10330 PF05726 Pirin C-terminal cupin domain V428_RS10335 PF00444 Ribosomal protein L36 V428_RS10340 PF01197 Ribosomal protein L31 V428_RS10355 PF01863 Protein of unknown function DUF45 V428_RS10370 PF03606 C4-dicarboxylate anaerobic carrier V428_RS10380 PF05430 S-adenosyl-L-methionine-dependent methyltransferase V428_RS10380 PF01266 FAD dependent oxidoreductase V428_RS10385 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_RS10385 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_RS10400 PF00285 Citrate synthase, C-terminal domain V428_RS10410 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V428_RS10415 PF00890 FAD binding domain V428_RS10415 PF02910 Fumarate reductase flavoprotein C-term V428_RS10420 PF13085 2Fe-2S iron-sulfur cluster binding domain V428_RS10425 PF16078 2-oxoglutarate dehydrogenase N-terminus V428_RS10425 PF00676 Dehydrogenase E1 component V428_RS10425 PF16870 2-oxoglutarate dehydrogenase C-terminal V428_RS10425 PF02779 Transketolase, pyrimidine binding domain V428_RS10430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_RS10430 PF00364 Biotin-requiring enzyme V428_RS10430 PF02817 e3 binding domain V428_RS10435 PF08442 ATP-grasp domain V428_RS10435 PF00549 CoA-ligase V428_RS10440 PF00549 CoA-ligase V428_RS10440 PF02629 CoA binding domain V428_RS10450 PF03692 Putative zinc- or iron-chelating domain V428_RS10455 PF01266 FAD dependent oxidoreductase V428_RS10460 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS10465 PF00005 ABC transporter V428_RS10475 PF07702 UTRA domain V428_RS10475 PF00392 Bacterial regulatory proteins, gntR family V428_RS10480 PF00266 Aminotransferase class-V V428_RS10485 PF00202 Aminotransferase class-III V428_RS10495 PF02901 Pyruvate formate lyase-like V428_RS10495 PF01228 Glycine radical V428_RS10500 PF01226 Formate/nitrite transporter V428_RS10505 PF18381 YcaO cyclodehydratase C-terminal domain V428_RS10505 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding V428_RS10510 PF00893 Small Multidrug Resistance protein V428_RS10515 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_RS10515 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_RS10520 PF05193 Peptidase M16 inactive domain V428_RS10520 PF00675 Insulinase (Peptidase family M16) V428_RS10525 PF01053 Cys/Met metabolism PLP-dependent enzyme V428_RS10535 PF13460 NAD(P)H-binding V428_RS10540 PF03466 LysR substrate binding domain V428_RS10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS10545 PF00106 short chain dehydrogenase V428_RS10550 PF12833 Helix-turn-helix domain V428_RS10555 PF07715 TonB-dependent Receptor Plug Domain V428_RS10555 PF00593 TonB dependent receptor V428_RS10565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS10565 PF03466 LysR substrate binding domain V428_RS10570 PF01717 Cobalamin-independent synthase, Catalytic domain V428_RS10570 PF08267 Cobalamin-independent synthase, N-terminal domain V428_RS10580 PF00478 IMP dehydrogenase / GMP reductase domain V428_RS10580 PF00571 CBS domain V428_RS10585 PF07969 Amidohydrolase family V428_RS10595 PF01266 FAD dependent oxidoreductase V428_RS10600 PF04244 Deoxyribodipyrimidine photo-lyase-related protein V428_RS10605 PF01212 Beta-eliminating lyase V428_RS10610 PF00768 D-alanyl-D-alanine carboxypeptidase V428_RS10615 PF00293 NUDIX domain V428_RS10620 PF03918 Cytochrome C biogenesis protein V428_RS10625 PF08534 Redoxin V428_RS10630 PF01578 Cytochrome C assembly protein V428_RS10630 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V428_RS10635 PF03916 Polysulphide reductase, NrfD V428_RS10640 PF00037 4Fe-4S binding domain V428_RS10640 PF13247 4Fe-4S dicluster domain V428_RS10645 PF13435 Cytochrome c554 and c-prime V428_RS10645 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V428_RS10650 PF02335 Cytochrome c552 V428_RS10665 PF13183 4Fe-4S dicluster domain V428_RS10665 PF02754 Cysteine-rich domain V428_RS10670 PF00890 FAD binding domain V428_RS10675 PF01266 FAD dependent oxidoreductase V428_RS10675 PF04324 BFD-like [2Fe-2S] binding domain V428_RS10680 PF02810 SEC-C motif V428_RS10685 PF17200 Single Cache domain 2 V428_RS10685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS10685 PF00672 HAMP domain V428_RS10690 PF01047 MarR family V428_RS10690 PF00480 ROK family V428_RS10695 PF17203 Single cache domain 3 V428_RS10695 PF00989 PAS fold V428_RS10695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS10695 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V428_RS10700 PF00072 Response regulator receiver domain V428_RS10700 PF08279 HTH domain V428_RS10700 PF12431 Transcriptional regulator V428_RS10705 PF01970 Tripartite tricarboxylate transporter TctA family V428_RS10720 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS10720 PF01464 Transglycosylase SLT domain V428_RS10725 PF06826 Predicted Permease Membrane Region V428_RS10725 PF02080 TrkA-C domain V428_RS10735 PF12344 Ultra-violet resistance protein B V428_RS10735 PF17757 UvrB interaction domain V428_RS10735 PF02151 UvrB/uvrC motif V428_RS10735 PF00271 Helicase conserved C-terminal domain V428_RS10735 PF04851 Type III restriction enzyme, res subunit V428_RS10745 PF09335 SNARE associated Golgi protein V428_RS10750 PF02600 Disulfide bond formation protein DsbB V428_RS10755 PF06450 Bacterial Na+/H+ antiporter B (NhaB) V428_RS10760 PF07840 FadR C-terminal domain V428_RS10760 PF00392 Bacterial regulatory proteins, gntR family V428_RS10765 PF04293 SpoVR like protein V428_RS10770 PF04285 Protein of unknown function (DUF444) V428_RS10775 PF08298 PrkA AAA domain V428_RS10775 PF06798 PrkA serine protein kinase C-terminal domain V428_RS10780 PF00271 Helicase conserved C-terminal domain V428_RS10780 PF16124 RecQ zinc-binding V428_RS10780 PF00570 HRDC domain V428_RS10780 PF00270 DEAD/DEAH box helicase V428_RS10780 PF09382 RQC domain V428_RS10785 PF00375 Sodium:dicarboxylate symporter family V428_RS10790 PF03222 Tryptophan/tyrosine permease family V428_RS10795 PF00293 NUDIX domain V428_RS10800 PF04715 Anthranilate synthase component I, N terminal region V428_RS10800 PF00425 chorismate binding enzyme V428_RS10825 PF00343 Carbohydrate phosphorylase V428_RS10830 PF00939 Sodium:sulfate symporter transmembrane region V428_RS10835 PF00085 Thioredoxin V428_RS10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS10840 PF00512 His Kinase A (phospho-acceptor) domain V428_RS10840 PF01627 Hpt domain V428_RS10840 PF00072 Response regulator receiver domain V428_RS10840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_RS10840 PF00672 HAMP domain V428_RS10845 PF00005 ABC transporter V428_RS10845 PF00664 ABC transporter transmembrane region V428_RS10850 PF00664 ABC transporter transmembrane region V428_RS10850 PF00005 ABC transporter V428_RS10865 PF01575 MaoC like domain V428_RS10870 PF00561 alpha/beta hydrolase fold V428_RS10870 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus V428_RS10890 PF08543 Phosphomethylpyrimidine kinase V428_RS10895 PF03992 Antibiotic biosynthesis monooxygenase V428_RS10900 PF00465 Iron-containing alcohol dehydrogenase V428_RS10905 PF00583 Acetyltransferase (GNAT) family V428_RS10915 PF01928 CYTH domain V428_RS10925 PF02694 Uncharacterised BCR, YnfA/UPF0060 family V428_RS10935 PF13673 Acetyltransferase (GNAT) domain V428_RS10940 PF00271 Helicase conserved C-terminal domain V428_RS10940 PF00270 DEAD/DEAH box helicase V428_RS10945 PF00255 Glutathione peroxidase V428_RS10955 PF07478 D-ala D-ala ligase C-terminus V428_RS10955 PF01820 D-ala D-ala ligase N-terminus V428_RS10960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_RS10960 PF18029 Glyoxalase-like domain V428_RS10965 PF03942 DTW domain V428_RS10970 PF01925 Sulfite exporter TauE/SafE V428_RS10975 PF03466 LysR substrate binding domain V428_RS10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS10985 PF14525 AraC-binding-like domain V428_RS10985 PF12833 Helix-turn-helix domain V428_RS10990 PF11398 Protein of unknown function (DUF2813) V428_RS11000 PF00128 Alpha amylase, catalytic domain V428_RS11000 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_RS11035 PF00883 Cytosol aminopeptidase family, catalytic domain V428_RS11035 PF02789 Cytosol aminopeptidase family, N-terminal domain V428_RS11040 PF13419 Haloacid dehalogenase-like hydrolase V428_RS11045 PF07687 Peptidase dimerisation domain V428_RS11045 PF01546 Peptidase family M20/M25/M40 V428_RS11050 PF00365 Phosphofructokinase V428_RS11055 PF00121 Triosephosphate isomerase V428_RS11060 PF02698 DUF218 domain V428_RS11065 PF13847 Methyltransferase domain V428_RS11070 PF17192 MukF middle domain V428_RS11070 PF17193 MukF C-terminal domain V428_RS11070 PF03882 MukF winged-helix domain V428_RS11075 PF04288 MukE-like family V428_RS11080 PF16330 MukB hinge domain V428_RS11080 PF04310 MukB N-terminal V428_RS11085 PF05036 Sporulation related domain V428_RS11085 PF03330 Lytic transglycolase V428_RS11100 PF01327 Polypeptide deformylase V428_RS11115 PF02567 Phenazine biosynthesis-like protein V428_RS11130 PF03831 PhnA domain V428_RS11130 PF08274 PhnA Zinc-Ribbon V428_RS11140 PF08329 Chitinase A, N-terminal domain V428_RS11140 PF00704 Glycosyl hydrolases family 18 V428_RS11155 PF00300 Histidine phosphatase superfamily (branch 1) V428_RS11160 PF08448 PAS fold V428_RS11160 PF00990 Diguanylate cyclase, GGDEF domain V428_RS11170 PF01713 Smr domain V428_RS11175 PF05175 Methyltransferase small domain V428_RS11180 PF01264 Chorismate synthase V428_RS11190 PF00270 DEAD/DEAH box helicase V428_RS11190 PF00271 Helicase conserved C-terminal domain V428_RS11205 PF03222 Tryptophan/tyrosine permease family V428_RS11210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_RS11210 PF00356 Bacterial regulatory proteins, lacI family V428_RS11215 PF00381 PTS HPr component phosphorylation site V428_RS11215 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_RS11220 PF00294 pfkB family carbohydrate kinase V428_RS11225 PF02378 Phosphotransferase system, EIIC V428_RS11225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V428_RS11230 PF06560 Glucose-6-phosphate isomerase (GPI) V428_RS11235 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_RS11235 PF00356 Bacterial regulatory proteins, lacI family V428_RS11250 PF03610 PTS system fructose IIA component V428_RS11250 PF03830 PTS system sorbose subfamily IIB component V428_RS11255 PF03609 PTS system sorbose-specific iic component V428_RS11260 PF03613 PTS system mannose/fructose/sorbose family IID component V428_RS11270 PF06945 Protein of unknown function (DUF1289) V428_RS11275 PF03562 MltA specific insert domain V428_RS11275 PF06725 3D domain V428_RS11280 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_RS11285 PF00268 Ribonucleotide reductase, small chain V428_RS11290 PF00317 Ribonucleotide reductase, all-alpha domain V428_RS11290 PF03477 ATP cone domain V428_RS11290 PF02867 Ribonucleotide reductase, barrel domain V428_RS11295 PF13419 Haloacid dehalogenase-like hydrolase V428_RS11305 PF00521 DNA gyrase/topoisomerase IV, subunit A V428_RS11305 PF03989 DNA gyrase C-terminal domain, beta-propeller V428_RS11310 PF04055 Radical SAM superfamily V428_RS11320 PF02824 TGS domain V428_RS11320 PF03129 Anticodon binding domain V428_RS11320 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_RS11320 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V428_RS11325 PF00707 Translation initiation factor IF-3, C-terminal domain V428_RS11325 PF05198 Translation initiation factor IF-3, N-terminal domain V428_RS11330 PF01632 Ribosomal protein L35 V428_RS11335 PF00453 Ribosomal protein L20 V428_RS11340 PF01409 tRNA synthetases class II core domain (F) V428_RS11340 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain V428_RS11345 PF03147 Ferredoxin-fold anticodon binding domain V428_RS11345 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain V428_RS11345 PF01588 Putative tRNA binding domain V428_RS11345 PF03483 B3/4 domain V428_RS11345 PF03484 tRNA synthetase B5 domain V428_RS11350 PF00216 Bacterial DNA-binding protein V428_RS11355 PF00072 Response regulator receiver domain V428_RS11355 PF00512 His Kinase A (phospho-acceptor) domain V428_RS11355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS11355 PF09456 RcsC Alpha-Beta-Loop (ABL) V428_RS11370 PF02146 Sir2 family V428_RS11380 PF00990 Diguanylate cyclase, GGDEF domain V428_RS11380 PF17152 Periplasmic sensor domain V428_RS11385 PF00356 Bacterial regulatory proteins, lacI family V428_RS11390 PF00294 pfkB family carbohydrate kinase V428_RS11395 PF13407 Periplasmic binding protein domain V428_RS11400 PF02653 Branched-chain amino acid transport system / permease component V428_RS11405 PF00005 ABC transporter V428_RS11410 PF05025 RbsD / FucU transport protein family V428_RS11415 PF14497 Glutathione S-transferase, C-terminal domain V428_RS11415 PF02798 Glutathione S-transferase, N-terminal domain V428_RS11430 PF01171 PP-loop family V428_RS11435 PF00582 Universal stress protein family V428_RS11440 PF00027 Cyclic nucleotide-binding domain V428_RS11440 PF13545 Crp-like helix-turn-helix domain V428_RS11455 PF00403 Heavy-metal-associated domain V428_RS11465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_RS11465 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP V428_RS11480 PF00115 Cytochrome C and Quinol oxidase polypeptide I V428_RS11490 PF13185 GAF domain V428_RS11495 PF04352 ProQ/FINO family V428_RS11495 PF17516 ProQ C-terminal domain V428_RS11500 PF11818 C-terminal domain of tail specific protease (DUF3340) V428_RS11500 PF17804 Tail specific protease N-terminal domain V428_RS11500 PF03572 Peptidase family S41 V428_RS11500 PF00595 PDZ domain V428_RS11505 PF17432 Domain of unknown function (DUF3458_C) ARM repeats V428_RS11505 PF11940 Domain of unknown function (DUF3458) Ig-like fold V428_RS11505 PF01433 Peptidase family M1 domain V428_RS11515 PF05088 Bacterial NAD-glutamate dehydrogenase V428_RS11520 PF01180 Dihydroorotate dehydrogenase V428_RS11525 PF07126 Cell-division protein ZapC V428_RS11530 PF01170 Putative RNA methylase family UPF0020 V428_RS11530 PF02926 THUMP domain V428_RS11530 PF10672 S-adenosylmethionine-dependent methyltransferase V428_RS11540 PF00005 ABC transporter V428_RS11540 PF16326 ABC transporter C-terminal domain V428_RS11540 PF12848 ABC transporter V428_RS11550 PF07977 FabA-like domain V428_RS11555 PF05362 Lon protease (S16) C-terminal proteolytic domain V428_RS11555 PF13654 AAA domain V428_RS11565 PF07130 YebG protein V428_RS11575 PF00106 short chain dehydrogenase V428_RS11600 PF06974 Protein of unknown function (DUF1298) V428_RS11600 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain V428_RS11615 PF03972 MmgE/PrpD family V428_RS11620 PF00285 Citrate synthase, C-terminal domain V428_RS11635 PF04403 Paraquat-inducible protein A V428_RS11640 PF02470 MlaD protein V428_RS11645 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF V428_RS11645 PF01189 16S rRNA methyltransferase RsmB/F V428_RS11645 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF V428_RS11655 PF00589 Phage integrase family V428_RS11660 PF01026 TatD related DNase V428_RS11665 PF09115 DNA polymerase III, delta subunit, C terminal V428_RS11670 PF02223 Thymidylate kinase V428_RS11675 PF02618 YceG-like family V428_RS11680 PF01063 Amino-transferase class IV V428_RS11685 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_RS11685 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_RS11690 PF00550 Phosphopantetheine attachment site V428_RS11700 PF00698 Acyl transferase domain V428_RS11705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_RS11705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_RS11710 PF02504 Fatty acid synthesis protein V428_RS11715 PF01783 Ribosomal L32p protein family V428_RS11720 PF02620 Large ribosomal RNA subunit accumulation protein YceD V428_RS11730 PF03466 LysR substrate binding domain V428_RS11730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS11735 PF07690 Major Facilitator Superfamily V428_RS11740 PF02545 Maf-like protein V428_RS11750 PF00849 RNA pseudouridylate synthase V428_RS11750 PF01479 S4 domain V428_RS11755 PF12111 Polyribonucleotide phosphorylase C terminal V428_RS11755 PF10150 Ribonuclease E/G family V428_RS11755 PF00575 S1 RNA binding domain V428_RS11760 PF01384 Phosphate transporter family V428_RS11765 PF00692 dUTPase V428_RS11770 PF00485 Phosphoribulokinase / Uridine kinase family V428_RS11775 PF10609 NUBPL iron-transfer P-loop NTPase V428_RS11780 PF01588 Putative tRNA binding domain V428_RS11780 PF09334 tRNA synthetases class I (M) V428_RS11780 PF08264 Anticodon-binding domain of tRNA V428_RS11785 PF02798 Glutathione S-transferase, N-terminal domain V428_RS11785 PF00043 Glutathione S-transferase, C-terminal domain V428_RS11790 PF00708 Acylphosphatase V428_RS11795 PF00672 HAMP domain V428_RS11795 PF12729 Four helix bundle sensory module for signal transduction V428_RS11795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS11800 PF17785 PUA-like domain V428_RS11800 PF10672 S-adenosylmethionine-dependent methyltransferase V428_RS11820 PF02769 AIR synthase related protein, C-terminal domain V428_RS11820 PF00586 AIR synthase related protein, N-terminal domain V428_RS11830 PF00753 Metallo-beta-lactamase superfamily V428_RS11835 PF00072 Response regulator receiver domain V428_RS11840 PF00512 His Kinase A (phospho-acceptor) domain V428_RS11840 PF00072 Response regulator receiver domain V428_RS11840 PF01627 Hpt domain V428_RS11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS11840 PF00672 HAMP domain V428_RS11840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V428_RS11855 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold V428_RS11855 PF00271 Helicase conserved C-terminal domain V428_RS11855 PF11898 Domain of unknown function (DUF3418) V428_RS11855 PF04408 Helicase associated domain (HA2) V428_RS11855 PF00270 DEAD/DEAH box helicase V428_RS11860 PF01368 DHH family V428_RS11860 PF02272 DHHA1 domain V428_RS11860 PF01743 Poly A polymerase head domain V428_RS11860 PF00571 CBS domain V428_RS11865 PF00072 Response regulator receiver domain V428_RS11865 PF00196 Bacterial regulatory proteins, luxR family V428_RS11875 PF02575 YbaB/EbfC DNA-binding family V428_RS11880 PF12169 DNA polymerase III subunits gamma and tau domain III V428_RS11880 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding V428_RS11880 PF12170 DNA polymerase III tau subunit V interacting with alpha V428_RS11885 PF00156 Phosphoribosyl transferase domain V428_RS11890 PF04304 Protein of unknown function (DUF454) V428_RS11895 PF01207 Dihydrouridine synthase (Dus) V428_RS11905 PF13408 Recombinase zinc beta ribbon domain V428_RS11905 PF00239 Resolvase, N terminal domain V428_RS11905 PF07508 Recombinase V428_RS11915 PF02796 Helix-turn-helix domain of resolvase V428_RS11915 PF00239 Resolvase, N terminal domain V428_RS12010 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS12015 PF01612 3'-5' exonuclease V428_RS12015 PF00570 HRDC domain V428_RS12020 PF00501 AMP-binding enzyme V428_RS12020 PF13193 AMP-binding enzyme C-terminal domain V428_RS12025 PF08241 Methyltransferase domain V428_RS12025 PF12697 Alpha/beta hydrolase family V428_RS12035 PF00814 Glycoprotease family V428_RS12040 PF04851 Type III restriction enzyme, res subunit V428_RS12040 PF13307 Helicase C-terminal domain V428_RS12050 PF08029 HisG, C-terminal domain V428_RS12050 PF01634 ATP phosphoribosyltransferase V428_RS12055 PF00815 Histidinol dehydrogenase V428_RS12060 PF00155 Aminotransferase class I and II V428_RS12065 PF08645 Polynucleotide kinase 3 phosphatase V428_RS12065 PF00475 Imidazoleglycerol-phosphate dehydratase V428_RS12070 PF00117 Glutamine amidotransferase class-I V428_RS12075 PF00977 Histidine biosynthesis protein V428_RS12080 PF00072 Response regulator receiver domain V428_RS12085 PF08448 PAS fold V428_RS12085 PF00990 Diguanylate cyclase, GGDEF domain V428_RS12090 PF00072 Response regulator receiver domain V428_RS12090 PF01627 Hpt domain V428_RS12090 PF00512 His Kinase A (phospho-acceptor) domain V428_RS12090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS12095 PF00977 Histidine biosynthesis protein V428_RS12100 PF01502 Phosphoribosyl-AMP cyclohydrolase V428_RS12100 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V428_RS12105 PF00501 AMP-binding enzyme V428_RS12105 PF13193 AMP-binding enzyme C-terminal domain V428_RS12110 PF03606 C4-dicarboxylate anaerobic carrier V428_RS12120 PF05433 Glycine zipper 2TM domain V428_RS12130 PF01799 [2Fe-2S] binding domain V428_RS12130 PF00111 2Fe-2S iron-sulfur cluster binding domain V428_RS12135 PF03450 CO dehydrogenase flavoprotein C-terminal domain V428_RS12135 PF00941 FAD binding domain in molybdopterin dehydrogenase V428_RS12140 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V428_RS12140 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V428_RS12145 PF00860 Permease family V428_RS12150 PF01979 Amidohydrolase family V428_RS12155 PF00860 Permease family V428_RS12160 PF01799 [2Fe-2S] binding domain V428_RS12160 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V428_RS12160 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V428_RS12165 PF00941 FAD binding domain in molybdopterin dehydrogenase V428_RS12170 PF01979 Amidohydrolase family V428_RS12175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_RS12175 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS12180 PF12804 MobA-like NTP transferase domain V428_RS12190 PF13478 XdhC Rossmann domain V428_RS12190 PF02625 XdhC and CoxI family V428_RS12195 PF00892 EamA-like transporter family V428_RS12200 PF00696 Amino acid kinase family V428_RS12205 PF01979 Amidohydrolase family V428_RS12210 PF01546 Peptidase family M20/M25/M40 V428_RS12210 PF07687 Peptidase dimerisation domain V428_RS12215 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS12220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_RS12220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_RS12225 PF13188 PAS domain V428_RS12225 PF02954 Bacterial regulatory protein, Fis family V428_RS12225 PF00158 Sigma-54 interaction domain V428_RS12230 PF10123 Mu-like prophage I protein V428_RS12255 PF07152 YaeQ protein V428_RS12260 PF00378 Enoyl-CoA hydratase/isomerase V428_RS12260 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V428_RS12260 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V428_RS12265 PF02803 Thiolase, C-terminal domain V428_RS12265 PF00108 Thiolase, N-terminal domain V428_RS12270 PF17863 AAA lid domain V428_RS12270 PF07726 ATPase family associated with various cellular activities (AAA) V428_RS12275 PF01882 Protein of unknown function DUF58 V428_RS12300 PF04542 Sigma-70 region 2 V428_RS12300 PF08281 Sigma-70, region 4 V428_RS12310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V428_RS12320 PF00563 EAL domain V428_RS12320 PF08668 HDOD domain V428_RS12325 PF00108 Thiolase, N-terminal domain V428_RS12325 PF02803 Thiolase, C-terminal domain V428_RS12330 PF00376 MerR family regulatory protein V428_RS12330 PF09278 MerR, DNA binding V428_RS12335 PF00375 Sodium:dicarboxylate symporter family V428_RS12340 PF06865 Pyrimidine/purine nucleoside phosphorylase V428_RS12345 PF03313 Serine dehydratase alpha chain V428_RS12345 PF03315 Serine dehydratase beta chain V428_RS12350 PF03313 Serine dehydratase alpha chain V428_RS12350 PF03315 Serine dehydratase beta chain V428_RS12355 PF13406 Transglycosylase SLT domain V428_RS12360 PF05166 YcgL domain V428_RS12365 PF03775 Septum formation inhibitor MinC, C-terminal domain V428_RS12365 PF05209 Septum formation inhibitor MinC, N-terminal domain V428_RS12370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V428_RS12375 PF03776 Septum formation topological specificity factor MinE V428_RS12380 PF04269 Protein of unknown function, DUF440 V428_RS12385 PF00912 Transglycosylase V428_RS12390 PF04269 Protein of unknown function, DUF440 V428_RS12400 PF13509 S1 domain V428_RS12400 PF17783 CvfB-like winged helix domain V428_RS12425 PF02525 Flavodoxin-like fold V428_RS12430 PF00892 EamA-like transporter family V428_RS12435 PF01370 NAD dependent epimerase/dehydratase family V428_RS12435 PF02222 ATP-grasp domain V428_RS12440 PF13419 Haloacid dehalogenase-like hydrolase V428_RS12450 PF00677 Lumazine binding domain V428_RS12455 PF06786 Uncharacterised protein family (UPF0253) V428_RS12460 PF01554 MatE V428_RS12480 PF03104 DNA polymerase family B, exonuclease domain V428_RS12480 PF00136 DNA polymerase family B V428_RS12490 PF00990 Diguanylate cyclase, GGDEF domain V428_RS12490 PF17151 Periplasmic sensor domain V428_RS12505 PF03279 Bacterial lipid A biosynthesis acyltransferase V428_RS12510 PF03279 Bacterial lipid A biosynthesis acyltransferase V428_RS12520 PF03466 LysR substrate binding domain V428_RS12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS12525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_RS12525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_RS12530 PF01261 Xylose isomerase-like TIM barrel V428_RS12535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS12535 PF03466 LysR substrate binding domain V428_RS12545 PF01966 HD domain V428_RS12555 PF00563 EAL domain V428_RS12555 PF13188 PAS domain V428_RS12555 PF00990 Diguanylate cyclase, GGDEF domain V428_RS12555 PF03707 Bacterial signalling protein N terminal repeat V428_RS12560 PF00232 Glycosyl hydrolase family 1 V428_RS12565 PF03466 LysR substrate binding domain V428_RS12565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS12570 PF00990 Diguanylate cyclase, GGDEF domain V428_RS12570 PF07694 5TMR of 5TMR-LYT V428_RS12575 PF00248 Aldo/keto reductase family V428_RS12585 PF00248 Aldo/keto reductase family V428_RS12590 PF03466 LysR substrate binding domain V428_RS12590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS12600 PF00326 Prolyl oligopeptidase family V428_RS12600 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region V428_RS12600 PF07676 WD40-like Beta Propeller Repeat V428_RS12605 PF12146 Serine aminopeptidase, S33 V428_RS12610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS12610 PF03466 LysR substrate binding domain V428_RS12620 PF00239 Resolvase, N terminal domain V428_RS12620 PF02796 Helix-turn-helix domain of resolvase V428_RS12630 PF04002 RadC-like JAB domain V428_RS12640 PF08448 PAS fold V428_RS12640 PF00990 Diguanylate cyclase, GGDEF domain V428_RS12640 PF00563 EAL domain V428_RS12660 PF01925 Sulfite exporter TauE/SafE V428_RS12665 PF13520 Amino acid permease V428_RS12675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase V428_RS12675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V428_RS12680 PF00378 Enoyl-CoA hydratase/isomerase V428_RS12685 PF00378 Enoyl-CoA hydratase/isomerase V428_RS12690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_RS12690 PF02770 Acyl-CoA dehydrogenase, middle domain V428_RS12690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_RS12695 PF00171 Aldehyde dehydrogenase family V428_RS12700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V428_RS12700 PF02770 Acyl-CoA dehydrogenase, middle domain V428_RS12700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V428_RS12705 PF01039 Carboxyl transferase domain V428_RS12710 PF00378 Enoyl-CoA hydratase/isomerase V428_RS12715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_RS12715 PF02785 Biotin carboxylase C-terminal domain V428_RS12715 PF00289 Biotin carboxylase, N-terminal domain V428_RS12715 PF00364 Biotin-requiring enzyme V428_RS12720 PF00682 HMGL-like V428_RS12725 PF09278 MerR, DNA binding V428_RS12725 PF00376 MerR family regulatory protein V428_RS12740 PF01184 GPR1/FUN34/yaaH family V428_RS12745 PF06167 Glucose-regulated metallo-peptidase M90 V428_RS12755 PF01235 Sodium:alanine symporter family V428_RS12790 PF00378 Enoyl-CoA hydratase/isomerase V428_RS12805 PF04341 Protein of unknown function, DUF485 V428_RS12810 PF00474 Sodium:solute symporter family V428_RS12815 PF12848 ABC transporter V428_RS12815 PF00005 ABC transporter V428_RS12820 PF13145 PPIC-type PPIASE domain V428_RS12830 PF02190 ATP-dependent protease La (LON) substrate-binding domain V428_RS12830 PF05362 Lon protease (S16) C-terminal proteolytic domain V428_RS12830 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS12835 PF10431 C-terminal, D2-small domain, of ClpB protein V428_RS12835 PF06689 ClpX C4-type zinc finger V428_RS12835 PF07724 AAA domain (Cdc48 subfamily) V428_RS12840 PF00574 Clp protease V428_RS12845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_RS12845 PF05698 Bacterial trigger factor protein (TF) C-terminus V428_RS12845 PF05697 Bacterial trigger factor protein (TF) V428_RS12860 PF02687 FtsX-like permease family V428_RS12860 PF12704 MacB-like periplasmic core domain V428_RS12865 PF00005 ABC transporter V428_RS12870 PF02687 FtsX-like permease family V428_RS12870 PF12704 MacB-like periplasmic core domain V428_RS12880 PF00270 DEAD/DEAH box helicase V428_RS12880 PF00271 Helicase conserved C-terminal domain V428_RS12880 PF03461 TRCF domain V428_RS12880 PF17757 UvrB interaction domain V428_RS12880 PF02559 CarD-like/TRCF domain V428_RS12885 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain V428_RS12890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS12895 PF00892 EamA-like transporter family V428_RS12905 PF00300 Histidine phosphatase superfamily (branch 1) V428_RS12910 PF00675 Insulinase (Peptidase family M16) V428_RS12910 PF05193 Peptidase M16 inactive domain V428_RS12915 PF05724 Thiopurine S-methyltransferase (TPMT) V428_RS12930 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V428_RS12930 PF02805 Metal binding domain of Ada V428_RS12930 PF12833 Helix-turn-helix domain V428_RS12930 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V428_RS12990 PF13356 Arm DNA-binding domain V428_RS12990 PF00589 Phage integrase family V428_RS12995 PF00117 Glutamine amidotransferase class-I V428_RS12995 PF00958 GMP synthase C terminal domain V428_RS12995 PF02540 NAD synthase V428_RS13000 PF00571 CBS domain V428_RS13000 PF00478 IMP dehydrogenase / GMP reductase domain V428_RS13005 PF02705 K+ potassium transporter V428_RS13015 PF01618 MotA/TolQ/ExbB proton channel family V428_RS13020 PF02472 Biopolymer transport protein ExbD/TolR V428_RS13025 PF00892 EamA-like transporter family V428_RS13030 PF02601 Exonuclease VII, large subunit V428_RS13030 PF13742 OB-fold nucleic acid binding domain V428_RS13035 PF04055 Radical SAM superfamily V428_RS13040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS13040 PF00672 HAMP domain V428_RS13045 PF00793 DAHP synthetase I family V428_RS13050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V428_RS13055 PF00266 Aminotransferase class-V V428_RS13060 PF00766 Electron transfer flavoprotein FAD-binding domain V428_RS13060 PF01012 Electron transfer flavoprotein domain V428_RS13065 PF01012 Electron transfer flavoprotein domain V428_RS13075 PF01544 CorA-like Mg2+ transporter protein V428_RS13080 PF11143 Protein of unknown function (DUF2919) V428_RS13095 PF00593 TonB dependent receptor V428_RS13095 PF07715 TonB-dependent Receptor Plug Domain V428_RS13100 PF01032 FecCD transport family V428_RS13105 PF01032 FecCD transport family V428_RS13110 PF00005 ABC transporter V428_RS13115 PF17837 4'-phosphopantetheinyl transferase N-terminal domain V428_RS13115 PF01648 4'-phosphopantetheinyl transferase superfamily V428_RS13120 PF01497 Periplasmic binding protein V428_RS13125 PF00501 AMP-binding enzyme V428_RS13125 PF13193 AMP-binding enzyme C-terminal domain V428_RS13125 PF00668 Condensation domain V428_RS13125 PF00550 Phosphopantetheine attachment site V428_RS13125 PF00975 Thioesterase domain V428_RS13130 PF00501 AMP-binding enzyme V428_RS13130 PF13193 AMP-binding enzyme C-terminal domain V428_RS13130 PF00668 Condensation domain V428_RS13130 PF07993 Male sterility protein V428_RS13130 PF00550 Phosphopantetheine attachment site V428_RS13140 PF00668 Condensation domain V428_RS13140 PF00550 Phosphopantetheine attachment site V428_RS13140 PF00975 Thioesterase domain V428_RS13140 PF00501 AMP-binding enzyme V428_RS13140 PF13193 AMP-binding enzyme C-terminal domain V428_RS13145 PF00857 Isochorismatase family V428_RS13145 PF00550 Phosphopantetheine attachment site V428_RS13150 PF00501 AMP-binding enzyme V428_RS13150 PF13193 AMP-binding enzyme C-terminal domain V428_RS13155 PF00425 chorismate binding enzyme V428_RS13160 PF07273 Protein of unknown function (DUF1439) V428_RS13170 PF00483 Nucleotidyl transferase V428_RS13190 PF00294 pfkB family carbohydrate kinase V428_RS13200 PF00762 Ferrochelatase V428_RS13205 PF05191 Adenylate kinase, active site lid V428_RS13210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS13210 PF00183 Hsp90 protein V428_RS13215 PF13662 Toprim domain V428_RS13215 PF02132 RecR protein V428_RS13220 PF02634 FdhD/NarQ family V428_RS13225 PF00158 Sigma-54 interaction domain V428_RS13225 PF02954 Bacterial regulatory protein, Fis family V428_RS13225 PF01590 GAF domain V428_RS13235 PF00384 Molybdopterin oxidoreductase V428_RS13235 PF01568 Molydopterin dinucleotide binding domain V428_RS13235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS13240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS13240 PF01568 Molydopterin dinucleotide binding domain V428_RS13240 PF00384 Molybdopterin oxidoreductase V428_RS13245 PF12800 4Fe-4S binding domain V428_RS13245 PF13247 4Fe-4S dicluster domain V428_RS13250 PF02705 K+ potassium transporter V428_RS13255 PF00037 4Fe-4S binding domain V428_RS13255 PF12798 4Fe-4S binding domain V428_RS13260 PF00361 Proton-conducting membrane transporter V428_RS13265 PF00146 NADH dehydrogenase V428_RS13270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V428_RS13270 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V428_RS13270 PF00374 Nickel-dependent hydrogenase V428_RS13275 PF12838 4Fe-4S dicluster domain V428_RS13280 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_RS13285 PF07450 Formate hydrogenlyase maturation protein HycH V428_RS13290 PF01750 Hydrogenase maturation protease V428_RS13295 PF03841 L-seryl-tRNA selenium transferase V428_RS13295 PF12390 Selenocysteine synthase N terminal V428_RS13300 PF00009 Elongation factor Tu GTP binding domain V428_RS13300 PF09107 Elongation factor SelB, winged helix V428_RS13300 PF09106 Elongation factor SelB, winged helix V428_RS13300 PF09105 Elongation factor SelB, winged helix V428_RS13300 PF03144 Elongation factor Tu domain 2 V428_RS13305 PF01300 Telomere recombination V428_RS13305 PF07503 HypF finger V428_RS13305 PF17788 HypF Kae1-like domain V428_RS13305 PF00708 Acylphosphatase V428_RS13310 PF01455 HupF/HypC family V428_RS13315 PF01924 Hydrogenase formation hypA family V428_RS13320 PF00586 AIR synthase related protein, N-terminal domain V428_RS13320 PF02769 AIR synthase related protein, C-terminal domain V428_RS13325 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA V428_RS13330 PF02492 CobW/HypB/UreG, nucleotide-binding domain V428_RS13335 PF08402 TOBE domain V428_RS13335 PF00005 ABC transporter V428_RS13340 PF00005 ABC transporter V428_RS13340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS13345 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS13345 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_RS13350 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS13355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS13360 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE V428_RS13365 PF01750 Hydrogenase maturation protease V428_RS13370 PF00374 Nickel-dependent hydrogenase V428_RS13375 PF03916 Polysulphide reductase, NrfD V428_RS13380 PF13247 4Fe-4S dicluster domain V428_RS13385 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal V428_RS13385 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V428_RS13390 PF00072 Response regulator receiver domain V428_RS13400 PF02895 Signal transducing histidine kinase, homodimeric domain V428_RS13400 PF09078 CheY binding V428_RS13400 PF01584 CheW-like domain V428_RS13400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS13400 PF01627 Hpt domain V428_RS13405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS13405 PF00672 HAMP domain V428_RS13405 PF17202 Single cache domain 3 V428_RS13410 PF01584 CheW-like domain V428_RS13415 PF03705 CheR methyltransferase, all-alpha domain V428_RS13415 PF01739 CheR methyltransferase, SAM binding domain V428_RS13420 PF01339 CheB methylesterase V428_RS13420 PF00072 Response regulator receiver domain V428_RS13425 PF00563 EAL domain V428_RS13425 PF00990 Diguanylate cyclase, GGDEF domain V428_RS13425 PF03707 Bacterial signalling protein N terminal repeat V428_RS13430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS13430 PF12729 Four helix bundle sensory module for signal transduction V428_RS13430 PF00672 HAMP domain V428_RS13435 PF01168 Alanine racemase, N-terminal domain V428_RS13435 PF00842 Alanine racemase, C-terminal domain V428_RS13450 PF13276 HTH-like domain V428_RS13450 PF00665 Integrase core domain V428_RS13450 PF13333 Integrase core domain V428_RS13460 PF01527 Transposase V428_RS13470 PF01527 Transposase V428_RS13510 PF01740 STAS domain V428_RS13510 PF00916 Sulfate permease family V428_RS13525 PF03350 Uncharacterized protein family, UPF0114 V428_RS13540 PF03239 Iron permease FTR1 family V428_RS13545 PF01593 Flavin containing amine oxidoreductase V428_RS13560 PF07690 Major Facilitator Superfamily V428_RS13570 PF00005 ABC transporter V428_RS13575 PF12704 MacB-like periplasmic core domain V428_RS13575 PF02687 FtsX-like permease family V428_RS13585 PF01565 FAD binding domain V428_RS13585 PF02913 FAD linked oxidases, C-terminal domain V428_RS13590 PF02589 LUD domain V428_RS13595 PF11870 Domain of unknown function (DUF3390) V428_RS13595 PF02589 LUD domain V428_RS13595 PF13183 4Fe-4S dicluster domain V428_RS13600 PF02754 Cysteine-rich domain V428_RS13605 PF02652 L-lactate permease V428_RS13610 PF03466 LysR substrate binding domain V428_RS13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS13620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_RS13625 PF00561 alpha/beta hydrolase fold V428_RS13650 PF01625 Peptide methionine sulfoxide reductase V428_RS13655 PF00696 Amino acid kinase family V428_RS13655 PF00583 Acetyltransferase (GNAT) family V428_RS13660 PF01842 ACT domain V428_RS13660 PF00696 Amino acid kinase family V428_RS13670 PF00884 Sulfatase V428_RS13675 PF02016 LD-carboxypeptidase N-terminal domain V428_RS13675 PF17676 LD-carboxypeptidase C-terminal domain V428_RS13680 PF01734 Patatin-like phospholipase V428_RS13685 PF17179 4Fe-4S dicluster domain V428_RS13690 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B V428_RS13690 PF00175 Oxidoreductase NAD-binding domain V428_RS13695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_RS13695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_RS13695 PF13187 4Fe-4S dicluster domain V428_RS13700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_RS13700 PF14824 Sirohaem biosynthesis protein central V428_RS13700 PF10414 Sirohaem synthase dimerisation region V428_RS13710 PF01906 Putative heavy-metal-binding V428_RS13730 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS13735 PF05728 Uncharacterised protein family (UPF0227) V428_RS13740 PF00860 Permease family V428_RS13745 PF08439 Oligopeptidase F V428_RS13745 PF01432 Peptidase family M3 V428_RS13750 PF08439 Oligopeptidase F V428_RS13750 PF01432 Peptidase family M3 V428_RS13755 PF05661 Protein of unknown function (DUF808) V428_RS13765 PF02355 Protein export membrane protein V428_RS13765 PF07549 SecD/SecF GG Motif V428_RS13770 PF13721 SecD export protein N-terminal TM region V428_RS13770 PF07549 SecD/SecF GG Motif V428_RS13770 PF02355 Protein export membrane protein V428_RS13805 PF01230 HIT domain V428_RS13810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS13810 PF00672 HAMP domain V428_RS13820 PF01979 Amidohydrolase family V428_RS13835 PF00375 Sodium:dicarboxylate symporter family V428_RS13845 PF00842 Alanine racemase, C-terminal domain V428_RS13845 PF01168 Alanine racemase, N-terminal domain V428_RS13850 PF03741 Integral membrane protein TerC family V428_RS13855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS13855 PF00005 ABC transporter V428_RS13865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS13865 PF00005 ABC transporter V428_RS13870 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_RS13870 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS13875 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS13880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS13885 PF01914 MarC family integral membrane protein V428_RS13895 PF00465 Iron-containing alcohol dehydrogenase V428_RS13895 PF00171 Aldehyde dehydrogenase family V428_RS13900 PF01966 HD domain V428_RS13905 PF07694 5TMR of 5TMR-LYT V428_RS13905 PF06580 Histidine kinase V428_RS13910 PF04397 LytTr DNA-binding domain V428_RS13910 PF00072 Response regulator receiver domain V428_RS13915 PF02554 Carbon starvation protein CstA V428_RS13920 PF11742 Protein of unknown function (DUF3302) V428_RS13925 PF00529 HlyD membrane-fusion protein of T1SS V428_RS13925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS13930 PF04851 Type III restriction enzyme, res subunit V428_RS13930 PF00271 Helicase conserved C-terminal domain V428_RS13935 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family V428_RS13940 PF00462 Glutaredoxin V428_RS13950 PF00155 Aminotransferase class I and II V428_RS13955 PF03606 C4-dicarboxylate anaerobic carrier V428_RS13960 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V428_RS13960 PF07055 Enoyl reductase FAD binding domain V428_RS13960 PF12241 Trans-2-enoyl-CoA reductase catalytic region V428_RS13965 PF08447 PAS fold V428_RS13965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS13965 PF13426 PAS domain V428_RS13975 PF00892 EamA-like transporter family V428_RS13980 PF02508 Rnf-Nqr subunit, membrane protein V428_RS13985 PF04060 Putative Fe-S cluster V428_RS13990 PF10531 SLBB domain V428_RS13990 PF13375 RnfC Barrel sandwich hybrid domain V428_RS13990 PF12838 4Fe-4S dicluster domain V428_RS13990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V428_RS13995 PF03116 NQR2, RnfD, RnfE family V428_RS14000 PF04205 FMN-binding domain V428_RS14005 PF02508 Rnf-Nqr subunit, membrane protein V428_RS14010 PF00633 Helix-hairpin-helix motif V428_RS14010 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_RS14010 PF10576 Iron-sulfur binding domain of endonuclease III V428_RS14015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_RS14020 PF18393 MotY N-terminal domain V428_RS14020 PF00691 OmpA family V428_RS14025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS14025 PF00672 HAMP domain V428_RS14025 PF12729 Four helix bundle sensory module for signal transduction V428_RS14030 PF00929 Exonuclease V428_RS14035 PF03553 Na+/H+ antiporter family V428_RS14035 PF13726 Na+-H+ antiporter family V428_RS14040 PF03880 DbpA RNA binding domain V428_RS14040 PF00271 Helicase conserved C-terminal domain V428_RS14040 PF00270 DEAD/DEAH box helicase V428_RS14045 PF03061 Thioesterase superfamily V428_RS14055 PF02913 FAD linked oxidases, C-terminal domain V428_RS14055 PF01565 FAD binding domain V428_RS14055 PF13183 4Fe-4S dicluster domain V428_RS14065 PF03741 Integral membrane protein TerC family V428_RS14065 PF03471 Transporter associated domain V428_RS14070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_RS14075 PF00962 Adenosine/AMP deaminase V428_RS14080 PF13344 Haloacid dehalogenase-like hydrolase V428_RS14085 PF02254 TrkA-N domain V428_RS14085 PF00999 Sodium/hydrogen exchanger family V428_RS14095 PF00733 Asparagine synthase V428_RS14095 PF13537 Glutamine amidotransferase domain V428_RS14105 PF00043 Glutathione S-transferase, C-terminal domain V428_RS14105 PF13417 Glutathione S-transferase, N-terminal domain V428_RS14110 PF14497 Glutathione S-transferase, C-terminal domain V428_RS14110 PF02798 Glutathione S-transferase, N-terminal domain V428_RS14120 PF04209 homogentisate 1,2-dioxygenase V428_RS14125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_RS14135 PF00849 RNA pseudouridylate synthase V428_RS14140 PF13426 PAS domain V428_RS14140 PF00563 EAL domain V428_RS14140 PF00990 Diguanylate cyclase, GGDEF domain V428_RS14145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS14145 PF08447 PAS fold V428_RS14155 PF03706 Lysylphosphatidylglycerol synthase TM region V428_RS14155 PF09924 Uncharacterised conserved protein (DUF2156) V428_RS14165 PF08019 Phosphoethanolamine transferase EptA/EptB V428_RS14165 PF00884 Sulfatase V428_RS14185 PF01027 Inhibitor of apoptosis-promoting Bax1 V428_RS14190 PF12805 FUSC-like inner membrane protein yccS V428_RS14195 PF04358 DsrC like protein V428_RS14200 PF05036 Sporulation related domain V428_RS14205 PF08245 Mur ligase middle domain V428_RS14205 PF02875 Mur ligase family, glutamate ligase domain V428_RS14210 PF01039 Carboxyl transferase domain V428_RS14210 PF17848 Acetyl-coA carboxylase zinc finger domain V428_RS14215 PF01416 tRNA pseudouridine synthase V428_RS14225 PF01118 Semialdehyde dehydrogenase, NAD binding domain V428_RS14225 PF02774 Semialdehyde dehydrogenase, dimerisation domain V428_RS14230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_RS14230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_RS14230 PF11890 Domain of unknown function (DUF3410) V428_RS14235 PF01569 PAP2 superfamily V428_RS14240 PF03180 NLPA lipoprotein V428_RS14245 PF07969 Amidohydrolase family V428_RS14265 PF01483 Proprotein convertase P-domain V428_RS14265 PF00082 Subtilase family V428_RS14275 PF00933 Glycosyl hydrolase family 3 N terminal domain V428_RS14275 PF01915 Glycosyl hydrolase family 3 C-terminal domain V428_RS14275 PF14310 Fibronectin type III-like domain V428_RS14285 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain V428_RS14285 PF02896 PEP-utilising enzyme, TIM barrel domain V428_RS14285 PF00391 PEP-utilising enzyme, mobile domain V428_RS14290 PF03618 Kinase/pyrophosphorylase V428_RS14300 PF00324 Amino acid permease V428_RS14360 PF00664 ABC transporter transmembrane region V428_RS14360 PF00005 ABC transporter V428_RS14360 PF03412 Peptidase C39 family V428_RS14365 PF16199 Radical_SAM C-terminal domain V428_RS14365 PF04055 Radical SAM superfamily V428_RS14370 PF01493 GXGXG motif V428_RS14370 PF01645 Conserved region in glutamate synthase V428_RS14370 PF04898 Glutamate synthase central domain V428_RS14370 PF00310 Glutamine amidotransferases class-II V428_RS14375 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS14375 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V428_RS14380 PF00005 ABC transporter V428_RS14385 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS14390 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS14405 PF00376 MerR family regulatory protein V428_RS14405 PF09278 MerR, DNA binding V428_RS14420 PF14521 Lysine-specific metallo-endopeptidase V428_RS14430 PF00271 Helicase conserved C-terminal domain V428_RS14430 PF00270 DEAD/DEAH box helicase V428_RS14435 PF13302 Acetyltransferase (GNAT) domain V428_RS14460 PF07759 Protein of unknown function (DUF1615) V428_RS14465 PF00682 HMGL-like V428_RS14465 PF08502 LeuA allosteric (dimerisation) domain V428_RS14470 PF02142 MGS-like domain V428_RS14470 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V428_RS14470 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_RS14475 PF00117 Glutamine amidotransferase class-I V428_RS14475 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain V428_RS14480 PF01113 Dihydrodipicolinate reductase, N-terminus V428_RS14480 PF05173 Dihydrodipicolinate reductase, C-terminus V428_RS14490 PF01812 5-formyltetrahydrofolate cyclo-ligase family V428_RS14495 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V428_RS14500 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V428_RS14505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_RS14505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_RS14505 PF01842 ACT domain V428_RS14510 PF01219 Prokaryotic diacylglycerol kinase V428_RS14515 PF00793 DAHP synthetase I family V428_RS14520 PF00583 Acetyltransferase (GNAT) family V428_RS14525 PF00005 ABC transporter V428_RS14530 PF01032 FecCD transport family V428_RS14535 PF00512 His Kinase A (phospho-acceptor) domain V428_RS14535 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS14535 PF00072 Response regulator receiver domain V428_RS14535 PF00989 PAS fold V428_RS14535 PF01627 Hpt domain V428_RS14535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS14545 PF00437 Type II/IV secretion system protein V428_RS14550 PF00483 Nucleotidyl transferase V428_RS14565 PF07670 Nucleoside recognition V428_RS14565 PF07664 Ferrous iron transport protein B C terminus V428_RS14565 PF02421 Ferrous iron transport protein B V428_RS14575 PF01253 Translation initiation factor SUI1 V428_RS14580 PF01169 Uncharacterized protein family UPF0016 V428_RS14610 PF13185 GAF domain V428_RS14610 PF00990 Diguanylate cyclase, GGDEF domain V428_RS14625 PF01406 tRNA synthetases class I (C) catalytic domain V428_RS14625 PF09190 DALR domain V428_RS14630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V428_RS14640 PF00149 Calcineurin-like phosphoesterase V428_RS14645 PF03916 Polysulphide reductase, NrfD V428_RS14650 PF00037 4Fe-4S binding domain V428_RS14650 PF13247 4Fe-4S dicluster domain V428_RS14670 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V428_RS14675 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB V428_RS14685 PF01757 Acyltransferase family V428_RS14720 PF00665 Integrase core domain V428_RS14720 PF13276 HTH-like domain V428_RS14725 PF01527 Transposase V428_RS14730 PF05598 Transposase domain (DUF772) V428_RS14730 PF01609 Transposase DDE domain V428_RS14735 PF04962 KduI/IolB family V428_RS14740 PF01261 Xylose isomerase-like TIM barrel V428_RS14745 PF00294 pfkB family carbohydrate kinase V428_RS14750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_RS14750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_RS14755 PF02653 Branched-chain amino acid transport system / permease component V428_RS14760 PF00005 ABC transporter V428_RS14765 PF13407 Periplasmic binding protein domain V428_RS14770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V428_RS14770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V428_RS14780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_RS14780 PF00205 Thiamine pyrophosphate enzyme, central domain V428_RS14780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_RS14790 PF00171 Aldehyde dehydrogenase family V428_RS14800 PF03050 Transposase IS66 family V428_RS14800 PF13005 zinc-finger binding domain of transposase IS66 V428_RS14800 PF13817 IS66 C-terminal element V428_RS14800 PF13007 Transposase C of IS166 homeodomain V428_RS14820 PF13356 Arm DNA-binding domain V428_RS14820 PF00589 Phage integrase family V428_RS14840 PF01066 CDP-alcohol phosphatidyltransferase V428_RS14845 PF01541 GIY-YIG catalytic domain V428_RS14845 PF02151 UvrB/uvrC motif V428_RS14845 PF08459 UvrC Helix-hairpin-helix N-terminal V428_RS14850 PF00196 Bacterial regulatory proteins, luxR family V428_RS14850 PF00072 Response regulator receiver domain V428_RS14855 PF02348 Cytidylyltransferase V428_RS14860 PF03966 Trm112p-like protein V428_RS14865 PF02606 Tetraacyldisaccharide-1-P 4'-kinase V428_RS14870 PF00664 ABC transporter transmembrane region V428_RS14870 PF00005 ABC transporter V428_RS14875 PF03772 Competence protein V428_RS14875 PF00753 Metallo-beta-lactamase superfamily V428_RS14905 PF00816 H-NS histone family V428_RS14910 PF09722 Protein of unknown function (DUF2384) V428_RS14935 PF00392 Bacterial regulatory proteins, gntR family V428_RS14935 PF00155 Aminotransferase class I and II V428_RS14995 PF05872 Bacterial protein of unknown function (DUF853) V428_RS15000 PF00155 Aminotransferase class I and II V428_RS15010 PF13609 Gram-negative porin V428_RS15015 PF06733 DEAD_2 V428_RS15015 PF13307 Helicase C-terminal domain V428_RS15025 PF00850 Histone deacetylase domain V428_RS15030 PF07690 Major Facilitator Superfamily V428_RS15035 PF01926 50S ribosome-binding GTPase V428_RS15040 PF00245 Alkaline phosphatase V428_RS15045 PF00245 Alkaline phosphatase V428_RS15065 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_RS15065 PF14760 Rnk N-terminus V428_RS15070 PF00196 Bacterial regulatory proteins, luxR family V428_RS15070 PF00072 Response regulator receiver domain V428_RS15075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS15075 PF07730 Histidine kinase V428_RS15075 PF05231 MASE1 V428_RS15080 PF07690 Major Facilitator Superfamily V428_RS15085 PF00990 Diguanylate cyclase, GGDEF domain V428_RS15090 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS15095 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS15100 PF00005 ABC transporter V428_RS15110 PF04116 Fatty acid hydroxylase superfamily V428_RS15115 PF13520 Amino acid permease V428_RS15120 PF02310 B12 binding domain V428_RS15120 PF02607 B12 binding domain V428_RS15120 PF00809 Pterin binding enzyme V428_RS15120 PF02574 Homocysteine S-methyltransferase V428_RS15120 PF02965 Vitamin B12 dependent methionine synthase, activation domain V428_RS15130 PF03471 Transporter associated domain V428_RS15130 PF00571 CBS domain V428_RS15130 PF01595 Cyclin M transmembrane N-terminal domain V428_RS15135 PF01895 PhoU domain V428_RS15140 PF00005 ABC transporter V428_RS15145 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS15150 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS15155 PF14437 MafB19-like deaminase V428_RS15165 PF01274 Malate synthase V428_RS15170 PF00463 Isocitrate lyase family V428_RS15175 PF00308 Bacterial dnaA protein V428_RS15190 PF00586 AIR synthase related protein, N-terminal domain V428_RS15190 PF02769 AIR synthase related protein, C-terminal domain V428_RS15195 PF00551 Formyl transferase V428_RS15200 PF01784 NIF3 (NGG1p interacting factor 3) V428_RS15205 PF00158 Sigma-54 interaction domain V428_RS15205 PF00072 Response regulator receiver domain V428_RS15205 PF02954 Bacterial regulatory protein, Fis family V428_RS15210 PF00512 His Kinase A (phospho-acceptor) domain V428_RS15210 PF13188 PAS domain V428_RS15210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS15215 PF06490 Flagellar regulatory protein FleQ V428_RS15215 PF02954 Bacterial regulatory protein, Fis family V428_RS15215 PF00158 Sigma-54 interaction domain V428_RS15225 PF01842 ACT domain V428_RS15230 PF02503 Polyphosphate kinase middle domain V428_RS15230 PF13090 Polyphosphate kinase C-terminal domain 2 V428_RS15230 PF17941 Polyphosphate kinase C-terminal domain 1 V428_RS15230 PF13089 Polyphosphate kinase N-terminal domain V428_RS15235 PF02541 Ppx/GppA phosphatase family V428_RS15240 PF03448 MgtE intracellular N domain V428_RS15240 PF01769 Divalent cation transporter V428_RS15240 PF00571 CBS domain V428_RS15245 PF00669 Bacterial flagellin N-terminal helical region V428_RS15250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_RS15250 PF00460 Flagella basal body rod protein V428_RS15255 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V428_RS15255 PF10135 Rod binding protein V428_RS15260 PF02119 Flagellar P-ring protein V428_RS15265 PF02107 Flagellar L-ring protein V428_RS15270 PF00460 Flagella basal body rod protein V428_RS15270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_RS15275 PF00460 Flagella basal body rod protein V428_RS15275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_RS15280 PF00460 Flagella basal body rod protein V428_RS15280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_RS15280 PF07559 Flagellar basal body protein FlaE V428_RS15290 PF00460 Flagella basal body rod protein V428_RS15290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V428_RS15295 PF00460 Flagella basal body rod protein V428_RS15300 PF01739 CheR methyltransferase, SAM binding domain V428_RS15300 PF03705 CheR methyltransferase, all-alpha domain V428_RS15305 PF01584 CheW-like domain V428_RS15305 PF00072 Response regulator receiver domain V428_RS15310 PF13144 Chaperone for flagella basal body P-ring formation V428_RS15325 PF12850 Calcineurin-like phosphoesterase superfamily domain V428_RS15330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS15340 PF00849 RNA pseudouridylate synthase V428_RS15340 PF01479 S4 domain V428_RS15345 PF01966 HD domain V428_RS15345 PF11871 Domain of unknown function (DUF3391) V428_RS15355 PF00923 Transaldolase/Fructose-6-phosphate aldolase V428_RS15360 PF04055 Radical SAM superfamily V428_RS15365 PF02901 Pyruvate formate lyase-like V428_RS15365 PF01228 Glycine radical V428_RS15370 PF00455 DeoR C terminal sensor domain V428_RS15370 PF08220 DeoR-like helix-turn-helix domain V428_RS15375 PF00892 EamA-like transporter family V428_RS15380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS15405 PF00313 'Cold-shock' DNA-binding domain V428_RS15410 PF02817 e3 binding domain V428_RS15410 PF00364 Biotin-requiring enzyme V428_RS15410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_RS15415 PF02779 Transketolase, pyrimidine binding domain V428_RS15415 PF02780 Transketolase, C-terminal domain V428_RS15420 PF00676 Dehydrogenase E1 component V428_RS15425 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V428_RS15435 PF05472 DNA replication terminus site-binding protein (Ter protein) V428_RS15440 PF04434 SWIM zinc finger V428_RS15440 PF00176 SNF2 family N-terminal domain V428_RS15440 PF00271 Helicase conserved C-terminal domain V428_RS15445 PF04337 Protein of unknown function, DUF480 V428_RS15455 PF06082 Exopolysaccharide biosynthesis protein YbjH V428_RS15475 PF02706 Chain length determinant protein V428_RS15485 PF00483 Nucleotidyl transferase V428_RS15490 PF04321 RmlD substrate binding domain V428_RS15495 PF00953 Glycosyl transferase family 4 V428_RS15505 PF00483 Nucleotidyl transferase V428_RS15505 PF01050 Mannose-6-phosphate isomerase V428_RS15510 PF01370 NAD dependent epimerase/dehydratase family V428_RS15515 PF16363 GDP-mannose 4,6 dehydratase V428_RS15525 PF01943 Polysaccharide biosynthesis protein V428_RS15530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V428_RS15540 PF16363 GDP-mannose 4,6 dehydratase V428_RS15545 PF00873 AcrB/AcrD/AcrF family V428_RS15550 PF00529 HlyD membrane-fusion protein of T1SS V428_RS15550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS15555 PF08361 MAATS-type transcriptional repressor, C-terminal region V428_RS15555 PF00440 Bacterial regulatory proteins, tetR family V428_RS15575 PF01479 S4 domain V428_RS15575 PF00849 RNA pseudouridylate synthase V428_RS15580 PF04079 Segregation and condensation complex subunit ScpB V428_RS15585 PF02616 Segregation and condensation protein ScpA V428_RS15590 PF01300 Telomere recombination V428_RS15595 PF02811 PHP domain V428_RS15600 PF00425 chorismate binding enzyme V428_RS15600 PF04715 Anthranilate synthase component I, N terminal region V428_RS15605 PF02885 Glycosyl transferase family, helical bundle domain V428_RS15605 PF00117 Glutamine amidotransferase class-I V428_RS15605 PF00591 Glycosyl transferase family, a/b domain V428_RS15610 PF02885 Glycosyl transferase family, helical bundle domain V428_RS15610 PF00591 Glycosyl transferase family, a/b domain V428_RS15615 PF00218 Indole-3-glycerol phosphate synthase V428_RS15615 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase V428_RS15620 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS15625 PF00290 Tryptophan synthase alpha chain V428_RS15655 PF07662 Na+ dependent nucleoside transporter C-terminus V428_RS15655 PF07670 Nucleoside recognition V428_RS15655 PF01773 Na+ dependent nucleoside transporter N-terminus V428_RS15675 PF05930 Prophage CP4-57 regulatory protein (AlpA) V428_RS15690 PF00857 Isochorismatase family V428_RS15695 PF00549 CoA-ligase V428_RS15695 PF02629 CoA binding domain V428_RS15700 PF06545 Protein of unknown function (DUF1116) V428_RS15705 PF00696 Amino acid kinase family V428_RS15720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS15720 PF03466 LysR substrate binding domain V428_RS15760 PF04002 RadC-like JAB domain V428_RS15800 PF02613 Nitrate reductase delta subunit V428_RS15805 PF00384 Molybdopterin oxidoreductase V428_RS15805 PF18364 Molybdopterin oxidoreductase N-terminal domain V428_RS15805 PF01568 Molydopterin dinucleotide binding domain V428_RS15810 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_RS15815 PF00072 Response regulator receiver domain V428_RS15815 PF00486 Transcriptional regulatory protein, C terminal V428_RS15825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V428_RS15830 PF01627 Hpt domain V428_RS15830 PF00672 HAMP domain V428_RS15830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS15830 PF00512 His Kinase A (phospho-acceptor) domain V428_RS15830 PF00072 Response regulator receiver domain V428_RS15835 PF07690 Major Facilitator Superfamily V428_RS15840 PF01040 UbiA prenyltransferase family V428_RS15845 PF03626 Prokaryotic Cytochrome C oxidase subunit IV V428_RS15850 PF00510 Cytochrome c oxidase subunit III V428_RS15855 PF00115 Cytochrome C and Quinol oxidase polypeptide I V428_RS15860 PF06481 COX Aromatic Rich Motif V428_RS15860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain V428_RS15870 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_RS15870 PF00034 Cytochrome c V428_RS15880 PF01156 Inosine-uridine preferring nucleoside hydrolase V428_RS15895 PF00127 Copper binding proteins, plastocyanin/azurin family V428_RS15900 PF02424 ApbE family V428_RS15905 PF07690 Major Facilitator Superfamily V428_RS15920 PF03372 Endonuclease/Exonuclease/phosphatase family V428_RS15925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS15930 PF00873 AcrB/AcrD/AcrF family V428_RS15940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS15940 PF00529 HlyD membrane-fusion protein of T1SS V428_RS15945 PF00873 AcrB/AcrD/AcrF family V428_RS15965 PF03099 Biotin/lipoate A/B protein ligase family V428_RS15965 PF10437 Bacterial lipoate protein ligase C-terminus V428_RS15970 PF00990 Diguanylate cyclase, GGDEF domain V428_RS15970 PF03707 Bacterial signalling protein N terminal repeat V428_RS15970 PF00563 EAL domain V428_RS15975 PF00873 AcrB/AcrD/AcrF family V428_RS15990 PF04143 Sulphur transport V428_RS15995 PF01022 Bacterial regulatory protein, arsR family V428_RS16010 PF02308 MgtC family V428_RS16015 PF13407 Periplasmic binding protein domain V428_RS16015 PF00356 Bacterial regulatory proteins, lacI family V428_RS16020 PF00251 Glycosyl hydrolases family 32 N-terminal domain V428_RS16020 PF08244 Glycosyl hydrolases family 32 C terminal V428_RS16025 PF00367 phosphotransferase system, EIIB V428_RS16025 PF02378 Phosphotransferase system, EIIC V428_RS16030 PF00294 pfkB family carbohydrate kinase V428_RS16035 PF02264 LamB porin V428_RS16035 PF11471 Maltoporin periplasmic N-terminal extension V428_RS16040 PF00226 DnaJ domain V428_RS16040 PF01556 DnaJ C terminal domain V428_RS16040 PF00684 DnaJ central domain V428_RS16045 PF00012 Hsp70 protein V428_RS16050 PF01025 GrpE V428_RS16055 PF01513 ATP-NAD kinase V428_RS16060 PF02463 RecF/RecN/SMC N terminal domain V428_RS16070 PF02833 DHHA2 domain V428_RS16070 PF01368 DHH family V428_RS16080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS16085 PF00005 ABC transporter V428_RS16085 PF02687 FtsX-like permease family V428_RS16085 PF12704 MacB-like periplasmic core domain V428_RS16090 PF02321 Outer membrane efflux protein V428_RS16095 PF04954 Siderophore-interacting protein V428_RS16095 PF08021 Siderophore-interacting FAD-binding domain V428_RS16105 PF00793 DAHP synthetase I family V428_RS16110 PF00816 H-NS histone family V428_RS16125 PF01266 FAD dependent oxidoreductase V428_RS16130 PF01381 Helix-turn-helix V428_RS16130 PF07883 Cupin domain V428_RS16135 PF00171 Aldehyde dehydrogenase family V428_RS16140 PF00202 Aminotransferase class-III V428_RS16145 PF00324 Amino acid permease V428_RS16155 PF13520 Amino acid permease V428_RS16165 PF02690 Na+/Pi-cotransporter V428_RS16170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V428_RS16170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V428_RS16175 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase V428_RS16180 PF00072 Response regulator receiver domain V428_RS16180 PF00989 PAS fold V428_RS16180 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS16180 PF00512 His Kinase A (phospho-acceptor) domain V428_RS16180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS16180 PF01627 Hpt domain V428_RS16195 PF01048 Phosphorylase superfamily V428_RS16205 PF00005 ABC transporter V428_RS16205 PF12848 ABC transporter V428_RS16220 PF13474 SnoaL-like domain V428_RS16225 PF14821 Threonine synthase N terminus V428_RS16225 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS16230 PF00288 GHMP kinases N terminal domain V428_RS16230 PF08544 GHMP kinases C terminal V428_RS16235 PF03447 Homoserine dehydrogenase, NAD binding domain V428_RS16235 PF00742 Homoserine dehydrogenase V428_RS16235 PF13840 ACT domain V428_RS16235 PF00696 Amino acid kinase family V428_RS16235 PF01842 ACT domain V428_RS16240 PF00588 SpoU rRNA Methylase family V428_RS16245 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) V428_RS16260 PF03737 Aldolase/RraA V428_RS16270 PF00486 Transcriptional regulatory protein, C terminal V428_RS16270 PF00072 Response regulator receiver domain V428_RS16285 PF00664 ABC transporter transmembrane region V428_RS16285 PF00005 ABC transporter V428_RS16290 PF00664 ABC transporter transmembrane region V428_RS16290 PF00005 ABC transporter V428_RS16310 PF18389 TrmO C-terminal domain V428_RS16310 PF01980 tRNA-methyltransferase O V428_RS16315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V428_RS16315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V428_RS16325 PF07724 AAA domain (Cdc48 subfamily) V428_RS16325 PF17871 AAA lid domain V428_RS16325 PF02861 Clp amino terminal domain, pathogenicity island component V428_RS16325 PF10431 C-terminal, D2-small domain, of ClpB protein V428_RS16325 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS16330 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS16335 PF00381 PTS HPr component phosphorylation site V428_RS16340 PF05524 PEP-utilising enzyme, N-terminal V428_RS16340 PF00391 PEP-utilising enzyme, mobile domain V428_RS16340 PF02896 PEP-utilising enzyme, TIM barrel domain V428_RS16345 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V428_RS16350 PF00990 Diguanylate cyclase, GGDEF domain V428_RS16360 PF01292 Prokaryotic cytochrome b561 V428_RS16375 PF13476 AAA domain V428_RS16380 PF00149 Calcineurin-like phosphoesterase V428_RS16380 PF12320 Type 5 capsule protein repressor C-terminal domain V428_RS16390 PF04381 Putative exonuclease, RdgC V428_RS16400 PF02254 TrkA-N domain V428_RS16400 PF00999 Sodium/hydrogen exchanger family V428_RS16405 PF04151 Bacterial pre-peptidase C-terminal domain V428_RS16405 PF04389 Peptidase family M28 V428_RS16415 PF00224 Pyruvate kinase, barrel domain V428_RS16415 PF02887 Pyruvate kinase, alpha/beta domain V428_RS16420 PF12795 Mechanosensitive ion channel porin domain V428_RS16420 PF12794 Mechanosensitive ion channel inner membrane domain 1 V428_RS16420 PF00924 Mechanosensitive ion channel V428_RS16430 PF10282 Lactonase, 7-bladed beta-propeller V428_RS16435 PF00860 Permease family V428_RS16445 PF16998 17 kDa outer membrane surface antigen V428_RS16445 PF05433 Glycine zipper 2TM domain V428_RS16450 PF03949 Malic enzyme, NAD binding domain V428_RS16450 PF00390 Malic enzyme, N-terminal domain V428_RS16455 PF00072 Response regulator receiver domain V428_RS16465 PF13247 4Fe-4S dicluster domain V428_RS16470 PF01568 Molydopterin dinucleotide binding domain V428_RS16470 PF00384 Molybdopterin oxidoreductase V428_RS16470 PF00384 Molybdopterin oxidoreductase V428_RS16470 PF01568 Molydopterin dinucleotide binding domain V428_RS16470 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V428_RS16470 PF12838 4Fe-4S dicluster domain V428_RS16470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS16470 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V428_RS16470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS16470 PF12838 4Fe-4S dicluster domain V428_RS16505 PF02634 FdhD/NarQ family V428_RS16510 PF12728 Helix-turn-helix domain V428_RS16510 PF12727 PBP superfamily domain V428_RS16515 PF00989 PAS fold V428_RS16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS16515 PF00512 His Kinase A (phospho-acceptor) domain V428_RS16520 PF02954 Bacterial regulatory protein, Fis family V428_RS16520 PF00158 Sigma-54 interaction domain V428_RS16520 PF00072 Response regulator receiver domain V428_RS16525 PF12849 PBP superfamily domain V428_RS16530 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS16535 PF00005 ABC transporter V428_RS16540 PF12804 MobA-like NTP transferase domain V428_RS16545 PF00994 Probable molybdopterin binding domain V428_RS16545 PF03454 MoeA C-terminal region (domain IV) V428_RS16545 PF03453 MoeA N-terminal region (domain I and II) V428_RS16550 PF04632 Fusaric acid resistance protein family V428_RS16565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS16565 PF13426 PAS domain V428_RS16565 PF08447 PAS fold V428_RS16585 PF05114 Protein of unknown function (DUF692) V428_RS16595 PF10725 Protein of unknown function (DUF2517) V428_RS16615 PF00072 Response regulator receiver domain V428_RS16615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS16615 PF00512 His Kinase A (phospho-acceptor) domain V428_RS16615 PF09308 LuxQ, periplasmic V428_RS16620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS16625 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS16630 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_RS16630 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS16635 PF00005 ABC transporter V428_RS16635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS16640 PF00005 ABC transporter V428_RS16640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS16650 PF01869 BadF/BadG/BcrA/BcrD ATPase family V428_RS16655 PF02838 Glycosyl hydrolase family 20, domain 2 V428_RS16655 PF00728 Glycosyl hydrolase family 20, catalytic domain V428_RS16660 PF08447 PAS fold V428_RS16660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS16675 PF01396 Topoisomerase DNA binding C4 zinc finger V428_RS16675 PF01751 Toprim domain V428_RS16675 PF01131 DNA topoisomerase V428_RS16675 PF08272 Topoisomerase I zinc-ribbon-like V428_RS16680 PF04996 Succinylarginine dihydrolase V428_RS16685 PF08496 Peptidase family S49 N-terminal V428_RS16685 PF01343 Peptidase family S49 V428_RS16690 PF00106 short chain dehydrogenase V428_RS16695 PF03466 LysR substrate binding domain V428_RS16695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS16700 PF07690 Major Facilitator Superfamily V428_RS16705 PF00155 Aminotransferase class I and II V428_RS16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS16715 PF03466 LysR substrate binding domain V428_RS16720 PF00709 Adenylosuccinate synthetase V428_RS16725 PF01161 Phosphatidylethanolamine-binding protein V428_RS16735 PF01204 Trehalase V428_RS16740 PF00579 tRNA synthetases class I (W and Y) V428_RS16745 PF01476 LysM domain V428_RS16745 PF08525 Opacity-associated protein A N-terminal motif V428_RS16745 PF01551 Peptidase family M23 V428_RS16750 PF03702 Anhydro-N-acetylmuramic acid kinase V428_RS16760 PF01965 DJ-1/PfpI family V428_RS16765 PF01042 Endoribonuclease L-PSP V428_RS16775 PF00563 EAL domain V428_RS16775 PF12792 CSS motif domain associated with EAL V428_RS16785 PF00456 Transketolase, thiamine diphosphate binding domain V428_RS16785 PF02780 Transketolase, C-terminal domain V428_RS16785 PF02779 Transketolase, pyrimidine binding domain V428_RS16790 PF02772 S-adenosylmethionine synthetase, central domain V428_RS16790 PF00438 S-adenosylmethionine synthetase, N-terminal domain V428_RS16790 PF02773 S-adenosylmethionine synthetase, C-terminal domain V428_RS16795 PF17283 SprT-like zinc ribbon domain V428_RS16795 PF10263 SprT-like family V428_RS16800 PF04231 Endonuclease I V428_RS16805 PF04452 RNA methyltransferase V428_RS16810 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain V428_RS16810 PF02951 Prokaryotic glutathione synthetase, N-terminal domain V428_RS16815 PF00672 HAMP domain V428_RS16815 PF12729 Four helix bundle sensory module for signal transduction V428_RS16815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS16820 PF02622 Uncharacterized ACR, COG1678 V428_RS16825 PF03652 Holliday junction resolvase V428_RS16830 PF00854 POT family V428_RS16835 PF00144 Beta-lactamase V428_RS16840 PF07726 ATPase family associated with various cellular activities (AAA) V428_RS16840 PF17863 AAA lid domain V428_RS16850 PF11992 Domain of unknown function (DUF3488) V428_RS16850 PF13559 Domain of unknown function (DUF4129) V428_RS16850 PF01841 Transglutaminase-like superfamily V428_RS16855 PF01235 Sodium:alanine symporter family V428_RS16860 PF00923 Transaldolase/Fructose-6-phosphate aldolase V428_RS16875 PF03167 Uracil DNA glycosylase superfamily V428_RS16880 PF01228 Glycine radical V428_RS16885 PF00375 Sodium:dicarboxylate symporter family V428_RS16890 PF00793 DAHP synthetase I family V428_RS16895 PF13369 Transglutaminase-like superfamily V428_RS16905 PF13847 Methyltransferase domain V428_RS16905 PF17827 PrmC N-terminal domain V428_RS16910 PF00472 RF-1 domain V428_RS16910 PF03462 PCRF domain V428_RS16915 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain V428_RS16915 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain V428_RS16915 PF01488 Shikimate / quinate 5-dehydrogenase V428_RS16920 PF03550 Outer membrane lipoprotein LolB V428_RS16935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase V428_RS16935 PF14572 Phosphoribosyl synthetase-associated domain V428_RS16940 PF00149 Calcineurin-like phosphoesterase V428_RS16940 PF02872 5'-nucleotidase, C-terminal domain V428_RS16945 PF01195 Peptidyl-tRNA hydrolase V428_RS16950 PF06071 Protein of unknown function (DUF933) V428_RS16950 PF01926 50S ribosome-binding GTPase V428_RS16995 PF02080 TrkA-C domain V428_RS16995 PF03600 Citrate transporter V428_RS17000 PF04973 Nicotinamide mononucleotide transporter V428_RS17005 PF01048 Phosphorylase superfamily V428_RS17015 PF04266 ASCH domain V428_RS17025 PF16657 Maltogenic Amylase, C-terminal domain V428_RS17025 PF00128 Alpha amylase, catalytic domain V428_RS17035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_RS17035 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V428_RS17035 PF10371 Domain of unknown function V428_RS17035 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V428_RS17035 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V428_RS17040 PF07690 Major Facilitator Superfamily V428_RS17045 PF13419 Haloacid dehalogenase-like hydrolase V428_RS17055 PF00171 Aldehyde dehydrogenase family V428_RS17060 PF04958 Arginine N-succinyltransferase beta subunit V428_RS17065 PF00202 Aminotransferase class-III V428_RS17070 PF00117 Glutamine amidotransferase class-I V428_RS17080 PF00579 tRNA synthetases class I (W and Y) V428_RS17085 PF13419 Haloacid dehalogenase-like hydrolase V428_RS17090 PF00834 Ribulose-phosphate 3 epimerase family V428_RS17095 PF02086 D12 class N6 adenine-specific DNA methyltransferase V428_RS17105 PF01761 3-dehydroquinate synthase V428_RS17110 PF01202 Shikimate kinase V428_RS17115 PF07660 Secretin and TonB N terminus short domain V428_RS17115 PF03958 Bacterial type II/III secretion system short domain V428_RS17115 PF00263 Bacterial type II and III secretion system protein V428_RS17115 PF11741 AMIN domain V428_RS17125 PF04350 Pilus assembly protein, PilO V428_RS17135 PF11104 Type IV pilus assembly protein PilM; V428_RS17140 PF17092 Penicillin-binding protein OB-like domain V428_RS17140 PF00905 Penicillin binding protein transpeptidase domain V428_RS17140 PF00912 Transglycosylase V428_RS17145 PF03466 LysR substrate binding domain V428_RS17145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS17150 PF02743 Cache domain V428_RS17150 PF00672 HAMP domain V428_RS17150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS17165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS17165 PF03466 LysR substrate binding domain V428_RS17180 PF01476 LysM domain V428_RS17180 PF08525 Opacity-associated protein A N-terminal motif V428_RS17180 PF01551 Peptidase family M23 V428_RS17190 PF12794 Mechanosensitive ion channel inner membrane domain 1 V428_RS17190 PF12795 Mechanosensitive ion channel porin domain V428_RS17190 PF00924 Mechanosensitive ion channel V428_RS17195 PF03009 Glycerophosphoryl diester phosphodiesterase family V428_RS17200 PF00672 HAMP domain V428_RS17200 PF02743 Cache domain V428_RS17200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS17205 PF00890 FAD binding domain V428_RS17205 PF02910 Fumarate reductase flavoprotein C-term V428_RS17210 PF13183 4Fe-4S dicluster domain V428_RS17210 PF13085 2Fe-2S iron-sulfur cluster binding domain V428_RS17215 PF02300 Fumarate reductase subunit C V428_RS17220 PF02313 Fumarate reductase subunit D V428_RS17240 PF06224 Winged helix DNA-binding domain V428_RS17255 PF00501 AMP-binding enzyme V428_RS17275 PF00072 Response regulator receiver domain V428_RS17275 PF00486 Transcriptional regulatory protein, C terminal V428_RS17280 PF08521 Two-component sensor kinase N-terminal V428_RS17280 PF00512 His Kinase A (phospho-acceptor) domain V428_RS17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS17290 PF00478 IMP dehydrogenase / GMP reductase domain V428_RS17300 PF09285 Elongation factor P, C-terminal V428_RS17300 PF08207 Elongation factor P (EF-P) KOW-like domain V428_RS17300 PF01132 Elongation factor P (EF-P) OB domain V428_RS17305 PF09997 Predicted membrane protein (DUF2238) V428_RS17315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_RS17315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_RS17325 PF00990 Diguanylate cyclase, GGDEF domain V428_RS17335 PF13419 Haloacid dehalogenase-like hydrolase V428_RS17345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS17345 PF03466 LysR substrate binding domain V428_RS17350 PF05230 MASE2 domain V428_RS17350 PF00990 Diguanylate cyclase, GGDEF domain V428_RS17355 PF00313 'Cold-shock' DNA-binding domain V428_RS17360 PF00857 Isochorismatase family V428_RS17365 PF01494 FAD binding domain V428_RS17370 PF01938 TRAM domain V428_RS17370 PF00919 Uncharacterized protein family UPF0004 V428_RS17370 PF04055 Radical SAM superfamily V428_RS17375 PF02562 PhoH-like protein V428_RS17380 PF02130 Uncharacterized protein family UPF0054 V428_RS17385 PF03471 Transporter associated domain V428_RS17385 PF00571 CBS domain V428_RS17390 PF00795 Carbon-nitrogen hydrolase V428_RS17395 PF07295 Zinc-ribbon containing domain V428_RS17400 PF13603 Leucyl-tRNA synthetase, Domain 2 V428_RS17400 PF08264 Anticodon-binding domain of tRNA V428_RS17400 PF00133 tRNA synthetases class I (I, L, M and V) V428_RS17415 PF01467 Cytidylyltransferase-like V428_RS17425 PF02590 Predicted SPOUT methyltransferase V428_RS17430 PF03717 Penicillin-binding Protein dimerisation domain V428_RS17430 PF00905 Penicillin binding protein transpeptidase domain V428_RS17435 PF01098 Cell cycle protein V428_RS17440 PF13406 Transglycosylase SLT domain V428_RS17445 PF03330 Lytic transglycolase V428_RS17445 PF05036 Sporulation related domain V428_RS17450 PF07943 Penicillin-binding protein 5, C-terminal domain V428_RS17450 PF00768 D-alanyl-D-alanine carboxypeptidase V428_RS17455 PF04359 Protein of unknown function (DUF493) V428_RS17460 PF03099 Biotin/lipoate A/B protein ligase family V428_RS17465 PF04055 Radical SAM superfamily V428_RS17465 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family V428_RS17475 PF06821 Serine hydrolase V428_RS17480 PF02508 Rnf-Nqr subunit, membrane protein V428_RS17495 PF13411 MerR HTH family regulatory protein V428_RS17500 PF02272 DHHA1 domain V428_RS17500 PF01368 DHH family V428_RS17500 PF17768 RecJ OB domain V428_RS17505 PF13098 Thioredoxin-like domain V428_RS17505 PF10411 Disulfide bond isomerase protein N-terminus V428_RS17510 PF01741 Large-conductance mechanosensitive channel, MscL V428_RS17515 PF02899 Phage integrase, N-terminal SAM-like domain V428_RS17515 PF00589 Phage integrase family V428_RS17520 PF00258 Flavodoxin V428_RS17525 PF01523 Putative modulator of DNA gyrase V428_RS17530 PF01523 Putative modulator of DNA gyrase V428_RS17540 PF03734 L,D-transpeptidase catalytic domain V428_RS17540 PF17969 L,D-transpeptidase C-terminal domain V428_RS17545 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase V428_RS17570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS17570 PF00384 Molybdopterin oxidoreductase V428_RS17570 PF01568 Molydopterin dinucleotide binding domain V428_RS17575 PF03916 Polysulphide reductase, NrfD V428_RS17580 PF13247 4Fe-4S dicluster domain V428_RS17585 PF00989 PAS fold V428_RS17585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS17585 PF00512 His Kinase A (phospho-acceptor) domain V428_RS17590 PF00196 Bacterial regulatory proteins, luxR family V428_RS17590 PF00072 Response regulator receiver domain V428_RS17600 PF04397 LytTr DNA-binding domain V428_RS17600 PF00072 Response regulator receiver domain V428_RS17605 PF02554 Carbon starvation protein CstA V428_RS17605 PF13722 5TM C-terminal transporter carbon starvation CstA V428_RS17610 PF03575 Peptidase family S51 V428_RS17615 PF00206 Lyase V428_RS17615 PF10415 Fumarase C C-terminus V428_RS17625 PF02635 DsrE/DsrF-like family V428_RS17630 PF00990 Diguanylate cyclase, GGDEF domain V428_RS17630 PF00563 EAL domain V428_RS17630 PF03707 Bacterial signalling protein N terminal repeat V428_RS17640 PF00575 S1 RNA binding domain V428_RS17640 PF03725 3' exoribonuclease family, domain 2 V428_RS17640 PF01138 3' exoribonuclease family, domain 1 V428_RS17640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain V428_RS17640 PF00013 KH domain V428_RS17645 PF00312 Ribosomal protein S15 V428_RS17650 PF01509 TruB family pseudouridylate synthase (N terminal domain) V428_RS17650 PF09157 Pseudouridine synthase II TruB, C-terminal V428_RS17650 PF16198 tRNA pseudouridylate synthase B C-terminal domain V428_RS17655 PF02033 Ribosome-binding factor A V428_RS17660 PF04760 Translation initiation factor IF-2, N-terminal region V428_RS17660 PF08364 Bacterial translation initiation factor IF-2 associated region V428_RS17660 PF00009 Elongation factor Tu GTP binding domain V428_RS17660 PF11987 Translation-initiation factor 2 V428_RS17665 PF00575 S1 RNA binding domain V428_RS17665 PF13184 NusA-like KH domain V428_RS17665 PF08529 NusA N-terminal domain V428_RS17670 PF17384 RimP C-terminal SH3 domain V428_RS17670 PF02576 RimP N-terminal domain V428_RS17685 PF03840 Preprotein translocase SecG subunit V428_RS17690 PF00121 Triosephosphate isomerase V428_RS17695 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V428_RS17695 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V428_RS17695 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V428_RS17695 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V428_RS17700 PF00809 Pterin binding enzyme V428_RS17705 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS17705 PF17862 AAA+ lid domain V428_RS17705 PF01434 Peptidase family M41 V428_RS17705 PF06480 FtsH Extracellular V428_RS17710 PF01728 FtsJ-like methyltransferase V428_RS17715 PF01985 CRS1 / YhbY (CRM) domain V428_RS17725 PF03449 Transcription elongation factor, N-terminal V428_RS17725 PF01272 Transcription elongation factor, GreA/GreB, C-term V428_RS17730 PF00691 OmpA family V428_RS17730 PF13677 Membrane MotB of proton-channel complex MotA/MotB V428_RS17735 PF01618 MotA/TolQ/ExbB proton channel family V428_RS17740 PF02609 Exonuclease VII small subunit V428_RS17745 PF00348 Polyprenyl synthetase V428_RS17750 PF02780 Transketolase, C-terminal domain V428_RS17750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase V428_RS17750 PF02779 Transketolase, pyrimidine binding domain V428_RS17755 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS17755 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_RS17760 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS17765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS17770 PF00005 ABC transporter V428_RS17770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS17775 PF04608 Phosphatidylglycerophosphatase A V428_RS17780 PF02769 AIR synthase related protein, C-terminal domain V428_RS17780 PF00586 AIR synthase related protein, N-terminal domain V428_RS17785 PF01029 NusB family V428_RS17790 PF00885 6,7-dimethyl-8-ribityllumazine synthase V428_RS17800 PF00925 GTP cyclohydrolase II V428_RS17800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V428_RS17805 PF00677 Lumazine binding domain V428_RS17810 PF01872 RibD C-terminal domain V428_RS17810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V428_RS17815 PF03477 ATP cone domain V428_RS17830 PF00464 Serine hydroxymethyltransferase V428_RS17845 PF02613 Nitrate reductase delta subunit V428_RS17865 PF00563 EAL domain V428_RS17865 PF13188 PAS domain V428_RS17865 PF03707 Bacterial signalling protein N terminal repeat V428_RS17865 PF00990 Diguanylate cyclase, GGDEF domain V428_RS17875 PF16177 Acetyl-coenzyme A synthetase N-terminus V428_RS17875 PF13193 AMP-binding enzyme C-terminal domain V428_RS17875 PF00501 AMP-binding enzyme V428_RS17880 PF01220 Dehydroquinase class II V428_RS17885 PF00364 Biotin-requiring enzyme V428_RS17890 PF02785 Biotin carboxylase C-terminal domain V428_RS17890 PF00289 Biotin carboxylase, N-terminal domain V428_RS17890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V428_RS17900 PF00474 Sodium:solute symporter family V428_RS17905 PF02378 Phosphotransferase system, EIIC V428_RS17905 PF00367 phosphotransferase system, EIIB V428_RS17905 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V428_RS17910 PF03466 LysR substrate binding domain V428_RS17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS17915 PF00107 Zinc-binding dehydrogenase V428_RS17915 PF08240 Alcohol dehydrogenase GroES-like domain V428_RS17925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_RS17925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_RS17925 PF01842 ACT domain V428_RS17930 PF14602 Hexapeptide repeat of succinyl-transferase V428_RS17930 PF12464 Maltose acetyltransferase V428_RS17935 PF00881 Nitroreductase family V428_RS17940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V428_RS17940 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS17945 PF01343 Peptidase family S49 V428_RS17960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_RS17960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_RS17965 PF07023 Protein of unknown function (DUF1315) V428_RS17970 PF00710 Asparaginase, N-terminal V428_RS17970 PF17763 Glutaminase/Asparaginase C-terminal domain V428_RS17975 PF03616 Sodium/glutamate symporter V428_RS17980 PF02743 Cache domain V428_RS17980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS17980 PF00672 HAMP domain V428_RS17985 PF00472 RF-1 domain V428_RS17985 PF03462 PCRF domain V428_RS17990 PF00152 tRNA synthetases class II (D, K and N) V428_RS17990 PF01336 OB-fold nucleic acid binding domain V428_RS17995 PF02567 Phenazine biosynthesis-like protein V428_RS18000 PF00175 Oxidoreductase NAD-binding domain V428_RS18000 PF00667 FAD binding domain V428_RS18000 PF00258 Flavodoxin V428_RS18005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_RS18005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_RS18010 PF01507 Phosphoadenosine phosphosulfate reductase family V428_RS18015 PF04069 Substrate binding domain of ABC-type glycine betaine transport system V428_RS18020 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS18025 PF00571 CBS domain V428_RS18025 PF00005 ABC transporter V428_RS18030 PF00186 Dihydrofolate reductase V428_RS18035 PF12821 Threonine/Serine exporter, ThrE V428_RS18040 PF06738 Putative threonine/serine exporter V428_RS18050 PF00994 Probable molybdopterin binding domain V428_RS18060 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_RS18060 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_RS18075 PF02801 Beta-ketoacyl synthase, C-terminal domain V428_RS18075 PF00109 Beta-ketoacyl synthase, N-terminal domain V428_RS18100 PF00221 Aromatic amino acid lyase V428_RS18110 PF07977 FabA-like domain V428_RS18115 PF00501 AMP-binding enzyme V428_RS18115 PF13193 AMP-binding enzyme C-terminal domain V428_RS18125 PF00550 Phosphopantetheine attachment site V428_RS18130 PF00550 Phosphopantetheine attachment site V428_RS18165 PF03150 Di-haem cytochrome c peroxidase V428_RS18165 PF00034 Cytochrome c V428_RS18170 PF00194 Eukaryotic-type carbonic anhydrase V428_RS18175 PF04227 Indigoidine synthase A like protein V428_RS18180 PF00294 pfkB family carbohydrate kinase V428_RS18185 PF13806 Rieske-like [2Fe-2S] domain V428_RS18185 PF18267 Rubredoxin NAD+ reductase C-terminal domain V428_RS18185 PF04324 BFD-like [2Fe-2S] binding domain V428_RS18185 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS18185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_RS18185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_RS18190 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS18190 PF04324 BFD-like [2Fe-2S] binding domain V428_RS18190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_RS18190 PF13806 Rieske-like [2Fe-2S] domain V428_RS18190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_RS18190 PF18267 Rubredoxin NAD+ reductase C-terminal domain V428_RS18195 PF00005 ABC transporter V428_RS18200 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS18205 PF00005 ABC transporter V428_RS18215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_RS18215 PF14824 Sirohaem biosynthesis protein central V428_RS18215 PF10414 Sirohaem synthase dimerisation region V428_RS18220 PF00384 Molybdopterin oxidoreductase V428_RS18220 PF01568 Molydopterin dinucleotide binding domain V428_RS18220 PF04324 BFD-like [2Fe-2S] binding domain V428_RS18220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V428_RS18235 PF00582 Universal stress protein family V428_RS18245 PF00171 Aldehyde dehydrogenase family V428_RS18250 PF01472 PUA domain V428_RS18250 PF00696 Amino acid kinase family V428_RS18255 PF07417 Sigma factor-binding transcriptional regulator Crl V428_RS18260 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) V428_RS18265 PF00156 Phosphoribosyl transferase domain V428_RS18270 PF01546 Peptidase family M20/M25/M40 V428_RS18270 PF07687 Peptidase dimerisation domain V428_RS18275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS18275 PF00005 ABC transporter V428_RS18280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V428_RS18280 PF00005 ABC transporter V428_RS18290 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS18290 PF12911 N-terminal TM domain of oligopeptide transport permease C V428_RS18295 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS18300 PF00593 TonB dependent receptor V428_RS18300 PF07715 TonB-dependent Receptor Plug Domain V428_RS18310 PF01618 MotA/TolQ/ExbB proton channel family V428_RS18315 PF01618 MotA/TolQ/ExbB proton channel family V428_RS18320 PF02472 Biopolymer transport protein ExbD/TolR V428_RS18335 PF06483 Chitinase C V428_RS18335 PF00704 Glycosyl hydrolases family 18 V428_RS18365 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_RS18370 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_RS18375 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_RS18380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS18380 PF00672 HAMP domain V428_RS18390 PF00313 'Cold-shock' DNA-binding domain V428_RS18425 PF00929 Exonuclease V428_RS18430 PF03193 RsgA GTPase V428_RS18435 PF02666 Phosphatidylserine decarboxylase V428_RS18440 PF09905 DNA-binding protein VF530 V428_RS18460 PF00563 EAL domain V428_RS18460 PF00990 Diguanylate cyclase, GGDEF domain V428_RS18460 PF03707 Bacterial signalling protein N terminal repeat V428_RS18465 PF06877 Regulator of ribonuclease activity B V428_RS18470 PF00801 PKD domain V428_RS18470 PF05547 Immune inhibitor A peptidase M6 V428_RS18485 PF00561 alpha/beta hydrolase fold V428_RS18490 PF00005 ABC transporter V428_RS18490 PF00664 ABC transporter transmembrane region V428_RS18495 PF06004 Bacterial protein of unknown function (DUF903) V428_RS18500 PF05922 Peptidase inhibitor I9 V428_RS18500 PF00082 Subtilase family V428_RS18505 PF00581 Rhodanese-like domain V428_RS18510 PF04960 Glutaminase V428_RS18515 PF04320 Protein with unknown function (DUF469) V428_RS18520 PF02390 Putative methyltransferase V428_RS18525 PF01483 Proprotein convertase P-domain V428_RS18525 PF04389 Peptidase family M28 V428_RS18530 PF00155 Aminotransferase class I and II V428_RS18535 PF12792 CSS motif domain associated with EAL V428_RS18535 PF00563 EAL domain V428_RS18540 PF01370 NAD dependent epimerase/dehydratase family V428_RS18540 PF08338 Domain of unknown function (DUF1731) V428_RS18550 PF00005 ABC transporter V428_RS18555 PF13472 GDSL-like Lipase/Acylhydrolase family V428_RS18560 PF01584 CheW-like domain V428_RS18560 PF00072 Response regulator receiver domain V428_RS18570 PF02080 TrkA-C domain V428_RS18570 PF06826 Predicted Permease Membrane Region V428_RS18575 PF03006 Haemolysin-III related V428_RS18580 PF00282 Pyridoxal-dependent decarboxylase conserved domain V428_RS18585 PF04279 Intracellular septation protein A V428_RS18590 PF03795 YCII-related domain V428_RS18595 PF00459 Inositol monophosphatase family V428_RS18605 PF00483 Nucleotidyl transferase V428_RS18610 PF00854 POT family V428_RS18615 PF00072 Response regulator receiver domain V428_RS18645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS18650 PF02321 Outer membrane efflux protein V428_RS18655 PF01207 Dihydrouridine synthase (Dus) V428_RS18660 PF02954 Bacterial regulatory protein, Fis family V428_RS18665 PF01810 LysE type translocator V428_RS18690 PF01521 Iron-sulphur cluster biosynthesis V428_RS18700 PF00654 Voltage gated chloride channel V428_RS18705 PF00202 Aminotransferase class-III V428_RS18720 PF01569 PAP2 superfamily V428_RS18730 PF11849 Domain of unknown function (DUF3369) V428_RS18740 PF00893 Small Multidrug Resistance protein V428_RS18745 PF00893 Small Multidrug Resistance protein V428_RS18750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_RS18755 PF14814 Bifunctional transglycosylase second domain V428_RS18755 PF00905 Penicillin binding protein transpeptidase domain V428_RS18755 PF00912 Transglycosylase V428_RS18760 PF08482 ATP-dependent helicase C-terminal V428_RS18760 PF00270 DEAD/DEAH box helicase V428_RS18760 PF04408 Helicase associated domain (HA2) V428_RS18760 PF00271 Helicase conserved C-terminal domain V428_RS18770 PF17746 SfsA N-terminal OB domain V428_RS18770 PF03749 Sugar fermentation stimulation protein RE domain V428_RS18775 PF01258 Prokaryotic dksA/traR C4-type zinc finger V428_RS18780 PF00749 tRNA synthetases class I (E and Q), catalytic domain V428_RS18785 PF12626 Polymerase A arginine-rich C-terminus V428_RS18785 PF01743 Poly A polymerase head domain V428_RS18785 PF12627 Probable RNA and SrmB- binding site of polymerase A V428_RS18790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V428_RS18795 PF02548 Ketopantoate hydroxymethyltransferase V428_RS18800 PF02569 Pantoate-beta-alanine ligase V428_RS18820 PF01869 BadF/BadG/BcrA/BcrD ATPase family V428_RS18825 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component V428_RS18830 PF01061 ABC-2 type transporter V428_RS18835 PF00005 ABC transporter V428_RS18840 PF00156 Phosphoribosyl transferase domain V428_RS18845 PF00440 Bacterial regulatory proteins, tetR family V428_RS18850 PF02441 Flavoprotein V428_RS18855 PF02875 Mur ligase family, glutamate ligase domain V428_RS18855 PF08245 Mur ligase middle domain V428_RS18855 PF01225 Mur ligase family, catalytic domain V428_RS18860 PF00719 Inorganic pyrophosphatase V428_RS18875 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) V428_RS18890 PF00005 ABC transporter V428_RS18910 PF08447 PAS fold V428_RS18910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS18935 PF02080 TrkA-C domain V428_RS18935 PF03600 Citrate transporter V428_RS18940 PF00009 Elongation factor Tu GTP binding domain V428_RS18945 PF01507 Phosphoadenosine phosphosulfate reductase family V428_RS18950 PF10414 Sirohaem synthase dimerisation region V428_RS18950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_RS18950 PF14824 Sirohaem biosynthesis protein central V428_RS18955 PF01145 SPFH domain / Band 7 family V428_RS18955 PF16200 C-terminal region of band_7 V428_RS18960 PF01957 NfeD-like C-terminal, partner-binding V428_RS18965 PF01380 SIS domain V428_RS18965 PF00571 CBS domain V428_RS18970 PF12848 ABC transporter V428_RS18970 PF00005 ABC transporter V428_RS18980 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ V428_RS18985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS18985 PF03466 LysR substrate binding domain V428_RS18990 PF02525 Flavodoxin-like fold V428_RS19015 PF00561 alpha/beta hydrolase fold V428_RS19020 PF00474 Sodium:solute symporter family V428_RS19025 PF03734 L,D-transpeptidase catalytic domain V428_RS19025 PF17969 L,D-transpeptidase C-terminal domain V428_RS19030 PF00924 Mechanosensitive ion channel V428_RS19035 PF00871 Acetokinase family V428_RS19040 PF04074 YhcH/YjgK/YiaL V428_RS19050 PF07732 Multicopper oxidase V428_RS19050 PF00394 Multicopper oxidase V428_RS19050 PF07731 Multicopper oxidase V428_RS19055 PF01177 Asp/Glu/Hydantoin racemase V428_RS19060 PF01810 LysE type translocator V428_RS19070 PF00392 Bacterial regulatory proteins, gntR family V428_RS19070 PF00155 Aminotransferase class I and II V428_RS19095 PF00209 Sodium:neurotransmitter symporter family V428_RS19105 PF00209 Sodium:neurotransmitter symporter family V428_RS19125 PF07690 Major Facilitator Superfamily V428_RS19135 PF01037 Lrp/AsnC ligand binding domain V428_RS19150 PF01047 MarR family V428_RS19155 PF02566 OsmC-like protein V428_RS19160 PF00107 Zinc-binding dehydrogenase V428_RS19160 PF16884 N-terminal domain of oxidoreductase V428_RS19165 PF00293 NUDIX domain V428_RS19175 PF01641 SelR domain V428_RS19180 PF00128 Alpha amylase, catalytic domain V428_RS19180 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_RS19185 PF00128 Alpha amylase, catalytic domain V428_RS19185 PF02806 Alpha amylase, C-terminal all-beta domain V428_RS19185 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V428_RS19190 PF02446 4-alpha-glucanotransferase V428_RS19195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V428_RS19195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V428_RS19200 PF01263 Aldose 1-epimerase V428_RS19205 PF02445 Quinolinate synthetase A protein V428_RS19210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS19210 PF00672 HAMP domain V428_RS19255 PF16331 TolA binding protein trimerisation V428_RS19255 PF13174 Tetratricopeptide repeat V428_RS19260 PF00691 OmpA family V428_RS19265 PF04052 TolB amino-terminal domain V428_RS19265 PF07676 WD40-like Beta Propeller Repeat V428_RS19275 PF02472 Biopolymer transport protein ExbD/TolR V428_RS19280 PF01618 MotA/TolQ/ExbB proton channel family V428_RS19285 PF03061 Thioesterase superfamily V428_RS19290 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) V428_RS19300 PF02322 Cytochrome bd terminal oxidase subunit II V428_RS19305 PF01654 Cytochrome bd terminal oxidase subunit I V428_RS19310 PF17864 RuvB AAA lid domain V428_RS19310 PF05491 RuvB C-terminal winged helix domain V428_RS19310 PF05496 Holliday junction DNA helicase RuvB P-loop domain V428_RS19315 PF01330 RuvA N terminal domain V428_RS19315 PF07499 RuvA, C-terminal domain V428_RS19320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS19320 PF00672 HAMP domain V428_RS19325 PF04073 Aminoacyl-tRNA editing domain V428_RS19325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V428_RS19325 PF03129 Anticodon binding domain V428_RS19330 PF00106 short chain dehydrogenase V428_RS19345 PF00378 Enoyl-CoA hydratase/isomerase V428_RS19350 PF10952 Protein of unknown function (DUF2753) V428_RS19355 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS19365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V428_RS19380 PF02594 Uncharacterised ACR, YggU family COG1872 V428_RS19385 PF02325 YGGT family V428_RS19390 PF03807 NADP oxidoreductase coenzyme F420-dependent V428_RS19390 PF14748 Pyrroline-5-carboxylate reductase dimerisation V428_RS19395 PF01168 Alanine racemase, N-terminal domain V428_RS19400 PF00437 Type II/IV secretion system protein V428_RS19405 PF00437 Type II/IV secretion system protein V428_RS19410 PF03883 Peroxide stress protein YaaA V428_RS19415 PF00270 DEAD/DEAH box helicase V428_RS19415 PF00271 Helicase conserved C-terminal domain V428_RS19420 PF05175 Methyltransferase small domain V428_RS19425 PF05525 Branched-chain amino acid transport protein V428_RS19430 PF05525 Branched-chain amino acid transport protein V428_RS19450 PF01207 Dihydrouridine synthase (Dus) V428_RS19460 PF00216 Bacterial DNA-binding protein V428_RS19465 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ V428_RS19470 PF07238 PilZ domain V428_RS19475 PF18073 Rubredoxin metal binding domain V428_RS19490 PF18429 Domain of unknown function (DUF5609) V428_RS19500 PF13426 PAS domain V428_RS19500 PF00563 EAL domain V428_RS19500 PF08447 PAS fold V428_RS19500 PF05231 MASE1 V428_RS19500 PF00990 Diguanylate cyclase, GGDEF domain V428_RS19500 PF08448 PAS fold V428_RS19505 PF01048 Phosphorylase superfamily V428_RS19510 PF01676 Metalloenzyme superfamily V428_RS19515 PF00591 Glycosyl transferase family, a/b domain V428_RS19515 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain V428_RS19515 PF02885 Glycosyl transferase family, helical bundle domain V428_RS19520 PF01791 DeoC/LacD family aldolase V428_RS19530 PF07670 Nucleoside recognition V428_RS19530 PF07662 Na+ dependent nucleoside transporter C-terminus V428_RS19530 PF01773 Na+ dependent nucleoside transporter N-terminus V428_RS19535 PF01026 TatD related DNase V428_RS19540 PF07963 Prokaryotic N-terminal methylation motif V428_RS19545 PF01938 TRAM domain V428_RS19545 PF05958 tRNA (Uracil-5-)-methyltransferase V428_RS19550 PF00909 Ammonium Transporter Family V428_RS19555 PF02899 Phage integrase, N-terminal SAM-like domain V428_RS19555 PF00589 Phage integrase family V428_RS19565 PF00717 Peptidase S24-like V428_RS19565 PF01381 Helix-turn-helix V428_RS19575 PF06892 Phage regulatory protein CII (CP76) V428_RS19780 PF03739 Lipopolysaccharide export system permease LptF/LptG V428_RS19785 PF03739 Lipopolysaccharide export system permease LptF/LptG V428_RS19790 PF02789 Cytosol aminopeptidase family, N-terminal domain V428_RS19790 PF00883 Cytosol aminopeptidase family, catalytic domain V428_RS19795 PF04364 DNA polymerase III chi subunit, HolC V428_RS19800 PF10458 Valyl tRNA synthetase tRNA binding arm V428_RS19800 PF00133 tRNA synthetases class I (I, L, M and V) V428_RS19800 PF08264 Anticodon-binding domain of tRNA V428_RS19805 PF03471 Transporter associated domain V428_RS19805 PF01595 Cyclin M transmembrane N-terminal domain V428_RS19805 PF00571 CBS domain V428_RS19810 PF09335 SNARE associated Golgi protein V428_RS19815 PF00768 D-alanyl-D-alanine carboxypeptidase V428_RS19850 PF02599 Global regulator protein family V428_RS19855 PF00696 Amino acid kinase family V428_RS19855 PF01842 ACT domain V428_RS19855 PF13840 ACT domain V428_RS19860 PF02272 DHHA1 domain V428_RS19860 PF01411 tRNA synthetases class II (A) V428_RS19860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V428_RS19865 PF02631 RecX family V428_RS19870 PF00154 recA bacterial DNA recombination protein V428_RS19875 PF02464 Competence-damaged protein V428_RS19890 PF13356 Arm DNA-binding domain V428_RS19890 PF00589 Phage integrase family V428_RS19895 PF01624 MutS domain I V428_RS19895 PF05192 MutS domain III V428_RS19895 PF00488 MutS domain V V428_RS19895 PF05190 MutS family domain IV V428_RS19895 PF05188 MutS domain II V428_RS19900 PF02028 BCCT, betaine/carnitine/choline family transporter V428_RS19915 PF04222 Protein of unknown function (DUF416) V428_RS19920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_RS19925 PF01551 Peptidase family M23 V428_RS19925 PF08525 Opacity-associated protein A N-terminal motif V428_RS19925 PF01476 LysM domain V428_RS19945 PF01297 Zinc-uptake complex component A periplasmic V428_RS19950 PF00005 ABC transporter V428_RS19955 PF00950 ABC 3 transport family V428_RS19965 PF00892 EamA-like transporter family V428_RS19970 PF03167 Uracil DNA glycosylase superfamily V428_RS19975 PF00892 EamA-like transporter family V428_RS19985 PF01541 GIY-YIG catalytic domain V428_RS20000 PF04012 PspA/IM30 family V428_RS20005 PF01553 Acyltransferase V428_RS20030 PF00578 AhpC/TSA family V428_RS20035 PF00684 DnaJ central domain V428_RS20035 PF00226 DnaJ domain V428_RS20035 PF01556 DnaJ C terminal domain V428_RS20070 PF00521 DNA gyrase/topoisomerase IV, subunit A V428_RS20070 PF03989 DNA gyrase C-terminal domain, beta-propeller V428_RS20075 PF01751 Toprim domain V428_RS20075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS20075 PF00204 DNA gyrase B V428_RS20075 PF00986 DNA gyrase B subunit, carboxyl terminus V428_RS20080 PF04632 Fusaric acid resistance protein family V428_RS20085 PF00529 HlyD membrane-fusion protein of T1SS V428_RS20085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V428_RS20090 PF07869 Protein of unknown function (DUF1656) V428_RS20100 PF00293 NUDIX domain V428_RS20105 PF05728 Uncharacterised protein family (UPF0227) V428_RS20110 PF00149 Calcineurin-like phosphoesterase V428_RS20115 PF06853 Protein of unknown function (DUF1249) V428_RS20120 PF00293 NUDIX domain V428_RS20125 PF02321 Outer membrane efflux protein V428_RS20130 PF01467 Cytidylyltransferase-like V428_RS20130 PF00294 pfkB family carbohydrate kinase V428_RS20135 PF03279 Bacterial lipid A biosynthesis acyltransferase V428_RS20150 PF01865 Protein of unknown function DUF47 V428_RS20155 PF01384 Phosphate transporter family V428_RS20160 PF04073 Aminoacyl-tRNA editing domain V428_RS20180 PF00155 Aminotransferase class I and II V428_RS20180 PF00392 Bacterial regulatory proteins, gntR family V428_RS20185 PF03466 LysR substrate binding domain V428_RS20185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS20190 PF03788 LrgA family V428_RS20195 PF04172 LrgB-like family V428_RS20210 PF12627 Probable RNA and SrmB- binding site of polymerase A V428_RS20210 PF01743 Poly A polymerase head domain V428_RS20210 PF01966 HD domain V428_RS20220 PF13401 AAA domain V428_RS20220 PF01471 Putative peptidoglycan binding domain V428_RS20225 PF16537 Type II secretion system protein B V428_RS20230 PF14815 NUDIX domain V428_RS20230 PF10576 Iron-sulfur binding domain of endonuclease III V428_RS20230 PF00730 HhH-GPD superfamily base excision DNA repair protein V428_RS20230 PF00633 Helix-hairpin-helix motif V428_RS20235 PF04362 Bacterial Fe(2+) trafficking V428_RS20240 PF01464 Transglycosylase SLT domain V428_RS20240 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain V428_RS20245 PF04076 Bacterial OB fold (BOF) protein V428_RS20250 PF00657 GDSL-like Lipase/Acylhydrolase V428_RS20260 PF00691 OmpA family V428_RS20260 PF01389 OmpA-like transmembrane domain V428_RS20265 PF03886 ABC-type transport auxiliary lipoprotein component V428_RS20270 PF02470 MlaD protein V428_RS20275 PF04403 Paraquat-inducible protein A V428_RS20280 PF17209 Hfq protein V428_RS20285 PF13419 Haloacid dehalogenase-like hydrolase V428_RS20295 PF00360 Phytochrome region V428_RS20295 PF00990 Diguanylate cyclase, GGDEF domain V428_RS20295 PF00563 EAL domain V428_RS20295 PF01590 GAF domain V428_RS20300 PF00701 Dihydrodipicolinate synthetase family V428_RS20305 PF05175 Methyltransferase small domain V428_RS20305 PF08468 Methyltransferase small domain N-terminal V428_RS20310 PF00483 Nucleotidyl transferase V428_RS20315 PF08323 Starch synthase catalytic domain V428_RS20315 PF00534 Glycosyl transferases group 1 V428_RS20355 PF03553 Na+/H+ antiporter family V428_RS20360 PF03466 LysR substrate binding domain V428_RS20360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS20365 PF13416 Bacterial extracellular solute-binding protein V428_RS20370 PF00005 ABC transporter V428_RS20370 PF08402 TOBE domain V428_RS20375 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS20380 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS20385 PF00171 Aldehyde dehydrogenase family V428_RS20395 PF00892 EamA-like transporter family V428_RS20400 PF01037 Lrp/AsnC ligand binding domain V428_RS20405 PF12464 Maltose acetyltransferase V428_RS20405 PF14602 Hexapeptide repeat of succinyl-transferase V428_RS20410 PF11941 Domain of unknown function (DUF3459) V428_RS20410 PF00128 Alpha amylase, catalytic domain V428_RS20415 PF00367 phosphotransferase system, EIIB V428_RS20415 PF02378 Phosphotransferase system, EIIC V428_RS20420 PF00356 Bacterial regulatory proteins, lacI family V428_RS20435 PF17763 Glutaminase/Asparaginase C-terminal domain V428_RS20435 PF00710 Asparaginase, N-terminal V428_RS20450 PF02142 MGS-like domain V428_RS20460 PF00210 Ferritin-like domain V428_RS20475 PF08351 Domain of unknown function (DUF1726) V428_RS20475 PF13718 GNAT acetyltransferase 2 V428_RS20475 PF05127 Helicase V428_RS20475 PF17176 tRNA-binding domain V428_RS20480 PF00106 short chain dehydrogenase V428_RS20485 PF01584 CheW-like domain V428_RS20485 PF00072 Response regulator receiver domain V428_RS20490 PF07670 Nucleoside recognition V428_RS20530 PF02660 Glycerol-3-phosphate acyltransferase V428_RS20535 PF02152 Dihydroneopterin aldolase V428_RS20540 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V428_RS20550 PF07690 Major Facilitator Superfamily V428_RS20555 PF02492 CobW/HypB/UreG, nucleotide-binding domain V428_RS20555 PF07683 Cobalamin synthesis protein cobW C-terminal domain V428_RS20565 PF01810 LysE type translocator V428_RS20570 PF03466 LysR substrate binding domain V428_RS20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS20580 PF11791 Aconitate B N-terminal domain V428_RS20580 PF06434 Aconitate hydratase 2 N-terminus V428_RS20580 PF00330 Aconitase family (aconitate hydratase) V428_RS20585 PF01734 Patatin-like phospholipase V428_RS20590 PF12729 Four helix bundle sensory module for signal transduction V428_RS20590 PF00672 HAMP domain V428_RS20590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS20595 PF00672 HAMP domain V428_RS20595 PF12729 Four helix bundle sensory module for signal transduction V428_RS20595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS20605 PF05231 MASE1 V428_RS20605 PF08448 PAS fold V428_RS20605 PF00990 Diguanylate cyclase, GGDEF domain V428_RS20605 PF00563 EAL domain V428_RS20605 PF08447 PAS fold V428_RS20605 PF13426 PAS domain V428_RS20610 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS20610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_RS20615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V428_RS20615 PF02817 e3 binding domain V428_RS20615 PF00364 Biotin-requiring enzyme V428_RS20620 PF00456 Transketolase, thiamine diphosphate binding domain V428_RS20620 PF17831 Pyruvate dehydrogenase E1 component middle domain V428_RS20625 PF07729 FCD domain V428_RS20625 PF00392 Bacterial regulatory proteins, gntR family V428_RS20640 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain V428_RS20640 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain V428_RS20650 PF00437 Type II/IV secretion system protein V428_RS20650 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V428_RS20655 PF00482 Type II secretion system (T2SS), protein F V428_RS20660 PF01478 Type IV leader peptidase family V428_RS20660 PF06750 Bacterial Peptidase A24 N-terminal domain V428_RS20665 PF01121 Dephospho-CoA kinase V428_RS20670 PF07072 Cell division protein V428_RS20675 PF03884 DNA gyrase inhibitor YacG V428_RS20680 PF00293 NUDIX domain V428_RS20690 PF02810 SEC-C motif V428_RS20690 PF07517 SecA DEAD-like domain V428_RS20690 PF07516 SecA Wing and Scaffold domain V428_RS20690 PF01043 SecA preprotein cross-linking domain V428_RS20700 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase V428_RS20705 PF12327 FtsZ family, C-terminal domain V428_RS20705 PF00091 Tubulin/FtsZ family, GTPase domain V428_RS20710 PF02491 SHS2 domain inserted in FTSA V428_RS20715 PF03799 Cell division protein FtsQ V428_RS20715 PF08478 POTRA domain, FtsQ-type V428_RS20720 PF08245 Mur ligase middle domain V428_RS20720 PF02875 Mur ligase family, glutamate ligase domain V428_RS20720 PF01225 Mur ligase family, catalytic domain V428_RS20725 PF04101 Glycosyltransferase family 28 C-terminal domain V428_RS20725 PF03033 Glycosyltransferase family 28 N-terminal domain V428_RS20730 PF01098 Cell cycle protein V428_RS20735 PF08245 Mur ligase middle domain V428_RS20735 PF02875 Mur ligase family, glutamate ligase domain V428_RS20740 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 V428_RS20740 PF00953 Glycosyl transferase family 4 V428_RS20745 PF02875 Mur ligase family, glutamate ligase domain V428_RS20745 PF08245 Mur ligase middle domain V428_RS20745 PF01225 Mur ligase family, catalytic domain V428_RS20750 PF08245 Mur ligase middle domain V428_RS20750 PF02875 Mur ligase family, glutamate ligase domain V428_RS20750 PF01225 Mur ligase family, catalytic domain V428_RS20755 PF03717 Penicillin-binding Protein dimerisation domain V428_RS20755 PF00905 Penicillin binding protein transpeptidase domain V428_RS20760 PF04999 Cell division protein FtsL V428_RS20765 PF01795 MraW methylase family V428_RS20770 PF02381 MraZ protein, putative antitoxin-like V428_RS20775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_RS20780 PF04348 LppC putative lipoprotein V428_RS20785 PF02021 Uncharacterised protein family UPF0102 V428_RS20790 PF13580 SIS domain V428_RS20795 PF04972 BON domain V428_RS20800 PF04386 Stringent starvation protein B V428_RS20805 PF00043 Glutathione S-transferase, C-terminal domain V428_RS20805 PF02798 Glutathione S-transferase, N-terminal domain V428_RS20810 PF02167 Cytochrome C1 family V428_RS20815 PF00032 Cytochrome b(C-terminal)/b6/petD V428_RS20815 PF00033 Cytochrome b/b6/petB V428_RS20820 PF00355 Rieske [2Fe-2S] domain V428_RS20820 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal V428_RS20825 PF00380 Ribosomal protein S9/S16 V428_RS20830 PF00572 Ribosomal protein L13 V428_RS20835 PF03969 AFG1-like ATPase V428_RS20845 PF00595 PDZ domain V428_RS20845 PF13180 PDZ domain V428_RS20850 PF13180 PDZ domain V428_RS20880 PF01979 Amidohydrolase family V428_RS20885 PF03841 L-seryl-tRNA selenium transferase V428_RS20890 PF07071 KDGP aldolase V428_RS20895 PF08279 HTH domain V428_RS20895 PF05043 Mga helix-turn-helix domain V428_RS20895 PF00874 PRD domain V428_RS20895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_RS20900 PF00381 PTS HPr component phosphorylation site V428_RS20905 PF03668 P-loop ATPase protein family V428_RS20910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V428_RS20915 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V428_RS20920 PF00309 Sigma-54 factor, Activator interacting domain (AID) V428_RS20920 PF04963 Sigma-54 factor, core binding domain V428_RS20920 PF04552 Sigma-54, DNA binding domain V428_RS20925 PF12399 Branched-chain amino acid ATP-binding cassette transporter V428_RS20925 PF00005 ABC transporter V428_RS20930 PF03968 OstA-like protein V428_RS20935 PF06835 Lipopolysaccharide-assembly, LptC-related V428_RS20945 PF01380 SIS domain V428_RS20945 PF00571 CBS domain V428_RS20950 PF00005 ABC transporter V428_RS20955 PF02405 Permease MlaE V428_RS20960 PF02470 MlaD protein V428_RS20965 PF05494 MlaC protein V428_RS20975 PF01722 BolA-like protein V428_RS20980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V428_RS20985 PF01523 Putative modulator of DNA gyrase V428_RS20990 PF04751 Protein of unknown function (DUF615) V428_RS21000 PF04363 Protein of unknown function (DUF496) V428_RS21035 PF01381 Helix-turn-helix V428_RS21035 PF07883 Cupin domain V428_RS21040 PF03594 Benzoate membrane transport protein V428_RS21050 PF02219 Methylenetetrahydrofolate reductase V428_RS21065 PF00672 HAMP domain V428_RS21065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS21070 PF03922 OmpW family V428_RS21080 PF00005 ABC transporter V428_RS21080 PF17755 UvrA DNA-binding domain V428_RS21080 PF17760 UvrA interaction domain V428_RS21085 PF00196 Bacterial regulatory proteins, luxR family V428_RS21090 PF00436 Single-strand binding protein family V428_RS21100 PF01545 Cation efflux family V428_RS21100 PF16916 Dimerisation domain of Zinc Transporter V428_RS21110 PF00313 'Cold-shock' DNA-binding domain V428_RS21115 PF07715 TonB-dependent Receptor Plug Domain V428_RS21115 PF00593 TonB dependent receptor V428_RS21120 PF00563 EAL domain V428_RS21120 PF00360 Phytochrome region V428_RS21120 PF01590 GAF domain V428_RS21120 PF00990 Diguanylate cyclase, GGDEF domain V428_RS21125 PF00672 HAMP domain V428_RS21125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS21125 PF00512 His Kinase A (phospho-acceptor) domain V428_RS21130 PF00486 Transcriptional regulatory protein, C terminal V428_RS21130 PF00072 Response regulator receiver domain V428_RS21155 PF00990 Diguanylate cyclase, GGDEF domain V428_RS21165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V428_RS21175 PF13538 UvrD-like helicase C-terminal domain V428_RS21180 PF12705 PD-(D/E)XK nuclease superfamily V428_RS21180 PF00580 UvrD/REP helicase N-terminal domain V428_RS21180 PF13361 UvrD-like helicase C-terminal domain V428_RS21185 PF17946 RecC C-terminal domain V428_RS21190 PF07681 DoxX V428_RS21195 PF02678 Pirin V428_RS21195 PF17954 Quercetinase C-terminal cupin domain V428_RS21205 PF03466 LysR substrate binding domain V428_RS21205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS21215 PF00392 Bacterial regulatory proteins, gntR family V428_RS21215 PF07702 UTRA domain V428_RS21230 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS21240 PF00005 ABC transporter V428_RS21240 PF08402 TOBE domain V428_RS21250 PF00990 Diguanylate cyclase, GGDEF domain V428_RS21270 PF00583 Acetyltransferase (GNAT) family V428_RS21275 PF06628 Catalase-related immune-responsive V428_RS21275 PF00199 Catalase V428_RS21300 PF00293 NUDIX domain V428_RS21305 PF01594 AI-2E family transporter V428_RS21310 PF00106 short chain dehydrogenase V428_RS21315 PF04371 Porphyromonas-type peptidyl-arginine deiminase V428_RS21320 PF03466 LysR substrate binding domain V428_RS21320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS21325 PF00158 Sigma-54 interaction domain V428_RS21325 PF00989 PAS fold V428_RS21325 PF02954 Bacterial regulatory protein, Fis family V428_RS21330 PF00465 Iron-containing alcohol dehydrogenase V428_RS21335 PF03610 PTS system fructose IIA component V428_RS21335 PF05524 PEP-utilising enzyme, N-terminal V428_RS21335 PF00381 PTS HPr component phosphorylation site V428_RS21335 PF00391 PEP-utilising enzyme, mobile domain V428_RS21340 PF02734 DAK2 domain V428_RS21345 PF02733 Dak1 domain V428_RS21350 PF00860 Permease family V428_RS21400 PF00009 Elongation factor Tu GTP binding domain V428_RS21400 PF14492 Elongation Factor G, domain II V428_RS21400 PF00679 Elongation factor G C-terminus V428_RS21400 PF03144 Elongation factor Tu domain 2 V428_RS21400 PF03764 Elongation factor G, domain IV V428_RS21405 PF00177 Ribosomal protein S7p/S5e V428_RS21415 PF04077 DsrH like protein V428_RS21420 PF02635 DsrE/DsrF-like family V428_RS21425 PF02635 DsrE/DsrF-like family V428_RS21430 PF01042 Endoribonuclease L-PSP V428_RS21435 PF08348 YheO-like PAS domain V428_RS21435 PF13309 HTH domain V428_RS21445 PF04997 RNA polymerase Rpb1, domain 1 V428_RS21445 PF00623 RNA polymerase Rpb1, domain 2 V428_RS21445 PF04983 RNA polymerase Rpb1, domain 3 V428_RS21445 PF04998 RNA polymerase Rpb1, domain 5 V428_RS21445 PF05000 RNA polymerase Rpb1, domain 4 V428_RS21450 PF00562 RNA polymerase Rpb2, domain 6 V428_RS21450 PF10385 RNA polymerase beta subunit external 1 domain V428_RS21450 PF04565 RNA polymerase Rpb2, domain 3 V428_RS21450 PF04561 RNA polymerase Rpb2, domain 2 V428_RS21450 PF04560 RNA polymerase Rpb2, domain 7 V428_RS21450 PF04563 RNA polymerase beta subunit V428_RS21455 PF16320 Ribosomal protein L7/L12 dimerisation domain V428_RS21455 PF00542 Ribosomal protein L7/L12 C-terminal domain V428_RS21460 PF00466 Ribosomal protein L10 V428_RS21465 PF00687 Ribosomal protein L1p/L10e family V428_RS21470 PF03946 Ribosomal protein L11, N-terminal domain V428_RS21470 PF00298 Ribosomal protein L11, RNA binding domain V428_RS21475 PF00467 KOW motif V428_RS21475 PF02357 Transcription termination factor nusG V428_RS21480 PF00584 SecE/Sec61-gamma subunits of protein translocation complex V428_RS21505 PF00485 Phosphoribulokinase / Uridine kinase family V428_RS21510 PF03099 Biotin/lipoate A/B protein ligase family V428_RS21510 PF02237 Biotin protein ligase C terminal domain V428_RS21510 PF08279 HTH domain V428_RS21515 PF01565 FAD binding domain V428_RS21515 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain V428_RS21520 PF02080 TrkA-C domain V428_RS21520 PF02254 TrkA-N domain V428_RS21525 PF02386 Cation transport protein V428_RS21530 PF12852 Cupin V428_RS21530 PF12833 Helix-turn-helix domain V428_RS21545 PF01131 DNA topoisomerase V428_RS21545 PF01751 Toprim domain V428_RS21550 PF03264 NapC/NirT cytochrome c family, N-terminal region V428_RS21555 PF18364 Molybdopterin oxidoreductase N-terminal domain V428_RS21555 PF00384 Molybdopterin oxidoreductase V428_RS21555 PF01568 Molydopterin dinucleotide binding domain V428_RS21565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS21570 PF00486 Transcriptional regulatory protein, C terminal V428_RS21570 PF00072 Response regulator receiver domain V428_RS21585 PF01794 Ferric reductase like transmembrane component V428_RS21590 PF00174 Oxidoreductase molybdopterin binding domain V428_RS21595 PF06496 Protein of unknown function (DUF1097) V428_RS21600 PF00072 Response regulator receiver domain V428_RS21600 PF00158 Sigma-54 interaction domain V428_RS21610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS21610 PF00512 His Kinase A (phospho-acceptor) domain V428_RS21625 PF00571 CBS domain V428_RS21625 PF00478 IMP dehydrogenase / GMP reductase domain V428_RS21630 PF10063 Uncharacterized integral membrane protein (DUF2301) V428_RS21640 PF01037 Lrp/AsnC ligand binding domain V428_RS21645 PF03590 Aspartate-ammonia ligase V428_RS21655 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS21655 PF10431 C-terminal, D2-small domain, of ClpB protein V428_RS21655 PF02861 Clp amino terminal domain, pathogenicity island component V428_RS21655 PF07724 AAA domain (Cdc48 subfamily) V428_RS21655 PF17871 AAA lid domain V428_RS21660 PF02578 Multi-copper polyphenol oxidoreductase laccase V428_RS21665 PF00849 RNA pseudouridylate synthase V428_RS21665 PF01479 S4 domain V428_RS21670 PF13525 Outer membrane lipoprotein V428_RS21675 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS21675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V428_RS21680 PF00375 Sodium:dicarboxylate symporter family V428_RS21685 PF03313 Serine dehydratase alpha chain V428_RS21690 PF08348 YheO-like PAS domain V428_RS21690 PF13309 HTH domain V428_RS21700 PF02233 NAD(P) transhydrogenase beta subunit V428_RS21705 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch V428_RS21705 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V428_RS21705 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V428_RS21710 PF00465 Iron-containing alcohol dehydrogenase V428_RS21715 PF12833 Helix-turn-helix domain V428_RS21715 PF06719 AraC-type transcriptional regulator N-terminus V428_RS21720 PF08212 Lipocalin-like domain V428_RS21725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS21725 PF02743 Cache domain V428_RS21725 PF00672 HAMP domain V428_RS21730 PF02666 Phosphatidylserine decarboxylase V428_RS21745 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_RS21745 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_RS21750 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain V428_RS21750 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain V428_RS21755 PF02863 Arginine repressor, C-terminal domain V428_RS21755 PF01316 Arginine repressor, DNA binding domain V428_RS21760 PF03606 C4-dicarboxylate anaerobic carrier V428_RS21765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V428_RS21765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V428_RS21770 PF00696 Amino acid kinase family V428_RS21790 PF02743 Cache domain V428_RS21790 PF00672 HAMP domain V428_RS21790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS21795 PF02653 Branched-chain amino acid transport system / permease component V428_RS21800 PF00005 ABC transporter V428_RS21805 PF13407 Periplasmic binding protein domain V428_RS21810 PF02837 Glycosyl hydrolases family 2, sugar binding domain V428_RS21810 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V428_RS21810 PF00703 Glycosyl hydrolases family 2 V428_RS21810 PF02929 Beta galactosidase small chain V428_RS21810 PF16353 Domain of unknown function(DUF4981) V428_RS21815 PF00356 Bacterial regulatory proteins, lacI family V428_RS21820 PF16363 GDP-mannose 4,6 dehydratase V428_RS21825 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain V428_RS21825 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain V428_RS21830 PF10509 Galactokinase galactose-binding signature V428_RS21830 PF08544 GHMP kinases C terminal V428_RS21830 PF00288 GHMP kinases N terminal domain V428_RS21835 PF01263 Aldose 1-epimerase V428_RS21840 PF00248 Aldo/keto reductase family V428_RS21845 PF02673 Bacitracin resistance protein BacA V428_RS21850 PF12973 ChrR Cupin-like domain V428_RS21855 PF04542 Sigma-70 region 2 V428_RS21855 PF04545 Sigma-70, region 4 V428_RS21865 PF03485 Arginyl tRNA synthetase N terminal domain V428_RS21865 PF05746 DALR anticodon binding domain V428_RS21865 PF00750 tRNA synthetases class I (R) V428_RS21875 PF00227 Proteasome subunit V428_RS21880 PF10431 C-terminal, D2-small domain, of ClpB protein V428_RS21880 PF07724 AAA domain (Cdc48 subfamily) V428_RS21880 PF00004 ATPase family associated with various cellular activities (AAA) V428_RS21885 PF07690 Major Facilitator Superfamily V428_RS21890 PF03466 LysR substrate binding domain V428_RS21890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V428_RS21895 PF18267 Rubredoxin NAD+ reductase C-terminal domain V428_RS21895 PF07992 Pyridine nucleotide-disulphide oxidoreductase V428_RS21895 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V428_RS21895 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V428_RS21895 PF04324 BFD-like [2Fe-2S] binding domain V428_RS21900 PF13806 Rieske-like [2Fe-2S] domain V428_RS21905 PF01226 Formate/nitrite transporter V428_RS21910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V428_RS21910 PF10414 Sirohaem synthase dimerisation region V428_RS21910 PF14824 Sirohaem biosynthesis protein central V428_RS21915 PF03448 MgtE intracellular N domain V428_RS21915 PF01769 Divalent cation transporter V428_RS21915 PF00571 CBS domain V428_RS21920 PF00672 HAMP domain V428_RS21920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V428_RS21925 PF03737 Aldolase/RraA V428_RS21930 PF02592 Putative vitamin uptake transporter V428_RS21940 PF02696 Uncharacterized ACR, YdiU/UPF0061 family V428_RS21945 PF00034 Cytochrome c V428_RS21950 PF09382 RQC domain V428_RS21950 PF16124 RecQ zinc-binding V428_RS21950 PF00570 HRDC domain V428_RS21950 PF00271 Helicase conserved C-terminal domain V428_RS21950 PF00270 DEAD/DEAH box helicase V428_RS21955 PF03061 Thioesterase superfamily V428_RS21970 PF03473 MOSC domain V428_RS21970 PF03475 3-alpha domain V428_RS21975 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS21980 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS21985 PF00005 ABC transporter V428_RS21985 PF08402 TOBE domain V428_RS21990 PF13416 Bacterial extracellular solute-binding protein V428_RS21995 PF13416 Bacterial extracellular solute-binding protein V428_RS22000 PF00202 Aminotransferase class-III V428_RS22005 PF00120 Glutamine synthetase, catalytic domain V428_RS22010 PF01258 Prokaryotic dksA/traR C4-type zinc finger V428_RS22025 PF05981 CreA protein V428_RS22030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V428_RS22030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V428_RS22035 PF00012 Hsp70 protein V428_RS22050 PF00128 Alpha amylase, catalytic domain V428_RS22050 PF02903 Alpha amylase, N-terminal ig-like domain V428_RS22065 PF05958 tRNA (Uracil-5-)-methyltransferase V428_RS22070 PF00072 Response regulator receiver domain V428_RS22070 PF00486 Transcriptional regulatory protein, C terminal V428_RS22075 PF00512 His Kinase A (phospho-acceptor) domain V428_RS22075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS22075 PF00672 HAMP domain V428_RS22085 PF03949 Malic enzyme, NAD binding domain V428_RS22085 PF00390 Malic enzyme, N-terminal domain V428_RS22090 PF13460 NAD(P)H-binding V428_RS22090 PF11066 Protein of unknown function (DUF2867) V428_RS22095 PF01197 Ribosomal protein L31 V428_RS22100 PF00271 Helicase conserved C-terminal domain V428_RS22100 PF00270 DEAD/DEAH box helicase V428_RS22100 PF18074 Primosomal protein N C-terminal domain V428_RS22100 PF17764 3′ DNA-binding domain (3′BD) V428_RS22100 PF18319 PriA DNA helicase Cys-rich region (CRR) domain V428_RS22110 PF00691 OmpA family V428_RS22110 PF01389 OmpA-like transmembrane domain V428_RS22115 PF00585 C-terminal regulatory domain of Threonine dehydratase V428_RS22115 PF00291 Pyridoxal-phosphate dependent enzyme V428_RS22120 PF00920 Dehydratase family V428_RS22125 PF01063 Amino-transferase class IV V428_RS22135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V428_RS22135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V428_RS22135 PF00205 Thiamine pyrophosphate enzyme, central domain V428_RS22140 PF13335 Magnesium chelatase, subunit ChlI C-terminal V428_RS22140 PF01078 Magnesium chelatase, subunit ChlI V428_RS22145 PF01553 Acyltransferase V428_RS22150 PF01553 Acyltransferase V428_RS22155 PF04463 Protein of unknown function (DUF523) V428_RS22165 PF00857 Isochorismatase family V428_RS22170 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain V428_RS22170 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family V428_RS22180 PF00005 ABC transporter V428_RS22185 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS22190 PF01323 DSBA-like thioredoxin domain V428_RS22195 PF01636 Phosphotransferase enzyme family V428_RS22200 PF13746 4Fe-4S dicluster domain V428_RS22200 PF12801 4Fe-4S binding domain V428_RS22200 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase V428_RS22205 PF06288 Protein of unknown function (DUF1040) V428_RS22210 PF01590 GAF domain V428_RS22210 PF00990 Diguanylate cyclase, GGDEF domain V428_RS22210 PF00563 EAL domain V428_RS22210 PF00360 Phytochrome region V428_RS22215 PF09278 MerR, DNA binding V428_RS22215 PF00376 MerR family regulatory protein V428_RS22220 PF00403 Heavy-metal-associated domain V428_RS22225 PF00156 Phosphoribosyl transferase domain V428_RS22230 PF03725 3' exoribonuclease family, domain 2 V428_RS22230 PF01138 3' exoribonuclease family, domain 1 V428_RS22235 PF03755 YicC-like family, N-terminal region V428_RS22235 PF08340 Domain of unknown function (DUF1732) V428_RS22255 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) V428_RS22270 PF01370 NAD dependent epimerase/dehydratase family V428_RS22275 PF08360 QacR-like protein, C-terminal region V428_RS22275 PF00440 Bacterial regulatory proteins, tetR family V428_RS22280 PF00155 Aminotransferase class I and II V428_RS22285 PF00107 Zinc-binding dehydrogenase V428_RS22285 PF08240 Alcohol dehydrogenase GroES-like domain V428_RS22290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V428_RS22295 PF00990 Diguanylate cyclase, GGDEF domain V428_RS22295 PF03707 Bacterial signalling protein N terminal repeat V428_RS22295 PF00563 EAL domain V428_RS22300 PF13361 UvrD-like helicase C-terminal domain V428_RS22300 PF00580 UvrD/REP helicase N-terminal domain V428_RS22305 PF00266 Aminotransferase class-V V428_RS22310 PF02657 Fe-S metabolism associated domain V428_RS22315 PF00899 ThiF family V428_RS22350 PF03544 Gram-negative bacterial TonB protein C-terminal V428_RS22355 PF02472 Biopolymer transport protein ExbD/TolR V428_RS22360 PF01618 MotA/TolQ/ExbB proton channel family V428_RS22365 PF01618 MotA/TolQ/ExbB proton channel family V428_RS22375 PF03472 Autoinducer binding domain V428_RS22375 PF00196 Bacterial regulatory proteins, luxR family V428_RS22380 PF01380 SIS domain V428_RS22385 PF08220 DeoR-like helix-turn-helix domain V428_RS22385 PF00455 DeoR C terminal sensor domain V428_RS22390 PF00486 Transcriptional regulatory protein, C terminal V428_RS22390 PF00072 Response regulator receiver domain V428_RS22395 PF00672 HAMP domain V428_RS22395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V428_RS22395 PF00512 His Kinase A (phospho-acceptor) domain V428_RS22400 PF00905 Penicillin binding protein transpeptidase domain V428_RS22405 PF06123 Inner membrane protein CreD V428_RS22410 PF12804 MobA-like NTP transferase domain V428_RS22410 PF14602 Hexapeptide repeat of succinyl-transferase V428_RS22410 PF00132 Bacterial transferase hexapeptide (six repeats) V428_RS22415 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain V428_RS22415 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain V428_RS22420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_RS22420 PF02874 ATP synthase alpha/beta family, beta-barrel domain V428_RS22425 PF00231 ATP synthase V428_RS22430 PF02874 ATP synthase alpha/beta family, beta-barrel domain V428_RS22430 PF00306 ATP synthase alpha/beta chain, C terminal domain V428_RS22430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V428_RS22435 PF00213 ATP synthase delta (OSCP) subunit V428_RS22440 PF00430 ATP synthase B/B' CF(0) V428_RS22445 PF00137 ATP synthase subunit C V428_RS22450 PF00119 ATP synthase A chain V428_RS22460 PF02195 ParB-like nuclease domain V428_RS22460 PF17762 HTH domain found in ParB protein V428_RS22465 PF13614 AAA domain V428_RS22470 PF02527 rRNA small subunit methyltransferase G V428_RS22475 PF01134 Glucose inhibited division protein A V428_RS22475 PF13932 GidA associated domain V428_RS22480 PF00258 Flavodoxin V428_RS22485 PF07715 TonB-dependent Receptor Plug Domain V428_RS22485 PF00593 TonB dependent receptor V428_RS22490 PF00005 ABC transporter V428_RS22495 PF00005 ABC transporter V428_RS22505 PF01032 FecCD transport family V428_RS22510 PF10396 GTP-binding protein TrmE N-terminus V428_RS22510 PF01926 50S ribosome-binding GTPase V428_RS22510 PF12631 MnmE helical domain V428_RS22515 PF02096 60Kd inner membrane protein V428_RS22515 PF14849 YidC periplasmic domain V428_RS22520 PF00825 Ribonuclease P V428_RS22525 PF00005 ABC transporter V428_RS22530 PF00528 Binding-protein-dependent transport system inner membrane component V428_RS22535 PF00497 Bacterial extracellular solute-binding proteins, family 3 V428_RS22565 PF00583 Acetyltransferase (GNAT) family V428_RS22575 PF01381 Helix-turn-helix V428_RS22575 PF00717 Peptidase S24-like V428_RS22580 PF00005 ABC transporter V428_RS22585 PF01242 6-pyruvoyl tetrahydropterin synthase V428_RS22620 PF01037 Lrp/AsnC ligand binding domain V428_RS22625 PF00701 Dihydrodipicolinate synthetase family