locus-tag class description AHA_0001 PF00308 Bacterial dnaA protein AHA_0001 PF08299 Bacterial dnaA protein helix-turn-helix AHA_0001 PF11638 DnaA N-terminal domain AHA_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain AHA_0002 PF02767 DNA polymerase III beta subunit, central domain AHA_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain AHA_0003 PF02463 RecF/RecN/SMC N terminal domain AHA_0004 PF00986 DNA gyrase B subunit, carboxyl terminus AHA_0004 PF18053 DNA gyrase B subunit insert domain AHA_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0004 PF01751 Toprim domain AHA_0004 PF00204 DNA gyrase B AHA_0006 PF08279 HTH domain AHA_0006 PF13280 WYL domain AHA_0007 PF00011 Hsp20/alpha crystallin family AHA_0008 PF00011 Hsp20/alpha crystallin family AHA_0009 PF00155 Aminotransferase class I and II AHA_0012 PF07690 Major Facilitator Superfamily AHA_0013 PF00072 Response regulator receiver domain AHA_0013 PF00486 Transcriptional regulatory protein, C terminal AHA_0014 PF13492 GAF domain AHA_0014 PF02702 Osmosensitive K+ channel His kinase sensor domain AHA_0014 PF13493 Domain of unknown function (DUF4118) AHA_0014 PF00512 His Kinase A (phospho-acceptor) domain AHA_0014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0015 PF02669 K+-transporting ATPase, c chain AHA_0017 PF03814 Potassium-transporting ATPase A subunit AHA_0019 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHA_0019 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_0020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0020 PF00512 His Kinase A (phospho-acceptor) domain AHA_0020 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_0021 PF00873 AcrB/AcrD/AcrF family AHA_0022 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_0023 PF00440 Bacterial regulatory proteins, tetR family AHA_0029 PF02887 Pyruvate kinase, alpha/beta domain AHA_0029 PF00224 Pyruvate kinase, barrel domain AHA_0030 PF07690 Major Facilitator Superfamily AHA_0032 PF00512 His Kinase A (phospho-acceptor) domain AHA_0032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0032 PF00672 HAMP domain AHA_0033 PF14532 Sigma-54 interaction domain AHA_0033 PF00072 Response regulator receiver domain AHA_0033 PF02954 Bacterial regulatory protein, Fis family AHA_0036 PF12146 Serine aminopeptidase, S33 AHA_0037 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_0038 PF12105 SpoU, rRNA methylase, C-terminal AHA_0038 PF00588 SpoU rRNA Methylase family AHA_0039 PF02824 TGS domain AHA_0039 PF13291 ACT domain AHA_0039 PF04607 Region found in RelA / SpoT proteins AHA_0040 PF01192 RNA polymerase Rpb6 AHA_0041 PF00625 Guanylate kinase AHA_0042 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AHA_0045 PF00892 EamA-like transporter family AHA_0049 PF00579 tRNA synthetases class I (W and Y) AHA_0050 PF03466 LysR substrate binding domain AHA_0050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0051 PF00582 Universal stress protein family AHA_0052 PF12241 Trans-2-enoyl-CoA reductase catalytic region AHA_0052 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AHA_0052 PF07055 Enoyl reductase FAD binding domain AHA_0053 PF00990 Diguanylate cyclase, GGDEF domain AHA_0054 PF00210 Ferritin-like domain AHA_0056 PF07690 Major Facilitator Superfamily AHA_0057 PF01810 LysE type translocator AHA_0060 PF15976 CS1-pili formation C-terminal AHA_0060 PF16967 E-set like domain AHA_0061 PF18649 EcpB C-terminal domain AHA_0062 PF16449 Fimbrillin MatB AHA_0063 PF00072 Response regulator receiver domain AHA_0063 PF00196 Bacterial regulatory proteins, luxR family AHA_0064 PF01627 Hpt domain AHA_0064 PF00989 PAS fold AHA_0064 PF00512 His Kinase A (phospho-acceptor) domain AHA_0064 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_0064 PF00072 Response regulator receiver domain AHA_0064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0066 PF07694 5TMR of 5TMR-LYT AHA_0066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0066 PF06580 Histidine kinase AHA_0067 PF00072 Response regulator receiver domain AHA_0067 PF04397 LytTr DNA-binding domain AHA_0068 PF07690 Major Facilitator Superfamily AHA_0069 PF02222 ATP-grasp domain AHA_0069 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AHA_0070 PF00731 AIR carboxylase AHA_0073 PF03466 LysR substrate binding domain AHA_0073 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0074 PF07715 TonB-dependent Receptor Plug Domain AHA_0074 PF00593 TonB dependent receptor AHA_0075 PF01177 Asp/Glu/Hydantoin racemase AHA_0082 PF07969 Amidohydrolase family AHA_0083 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AHA_0084 PF01209 ubiE/COQ5 methyltransferase family AHA_0085 PF02036 SCP-2 sterol transfer family AHA_0086 PF03109 ABC1 family AHA_0087 PF02416 mttA/Hcf106 family AHA_0088 PF02416 mttA/Hcf106 family AHA_0089 PF00902 Sec-independent protein translocase protein (TatC) AHA_0090 PF01026 TatD related DNase AHA_0091 PF00490 Delta-aminolevulinic acid dehydratase AHA_0092 PF01432 Peptidase family M3 AHA_0093 PF03707 Bacterial signalling protein N terminal repeat AHA_0093 PF00990 Diguanylate cyclase, GGDEF domain AHA_0093 PF00563 EAL domain AHA_0094 PF04445 Putative SAM-dependent methyltransferase AHA_0096 PF02541 Ppx/GppA phosphatase family AHA_0097 PF00271 Helicase conserved C-terminal domain AHA_0097 PF00270 DEAD/DEAH box helicase AHA_0098 PF00085 Thioredoxin AHA_0099 PF07497 Rho termination factor, RNA-binding domain AHA_0099 PF07498 Rho termination factor, N-terminal domain AHA_0099 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHA_0101 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AHA_0102 PF00175 Oxidoreductase NAD-binding domain AHA_0103 PF04380 Membrane fusogenic activity AHA_0104 PF12262 Bacterial virulence factor lipase N-terminal AHA_0105 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AHA_0105 PF01694 Rhomboid family AHA_0106 PF00581 Rhodanese-like domain AHA_0109 PF00005 ABC transporter AHA_0110 PF00005 ABC transporter AHA_0110 PF12399 Branched-chain amino acid ATP-binding cassette transporter AHA_0111 PF11862 Domain of unknown function (DUF3382) AHA_0111 PF02653 Branched-chain amino acid transport system / permease component AHA_0112 PF02653 Branched-chain amino acid transport system / permease component AHA_0113 PF13458 Periplasmic binding protein AHA_0114 PF00356 Bacterial regulatory proteins, lacI family AHA_0115 PF11975 Family 4 glycosyl hydrolase C-terminal domain AHA_0115 PF02056 Family 4 glycosyl hydrolase AHA_0116 PF02378 Phosphotransferase system, EIIC AHA_0116 PF00367 phosphotransferase system, EIIB AHA_0117 PF00392 Bacterial regulatory proteins, gntR family AHA_0117 PF07702 UTRA domain AHA_0118 PF01590 GAF domain AHA_0118 PF00158 Sigma-54 interaction domain AHA_0119 PF00753 Metallo-beta-lactamase superfamily AHA_0119 PF00301 Rubredoxin AHA_0119 PF00258 Flavodoxin AHA_0120 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_0120 PF18113 Rubredoxin binding C-terminal domain AHA_0122 PF12801 4Fe-4S binding domain AHA_0123 PF03222 Tryptophan/tyrosine permease family AHA_0127 PF05746 DALR anticodon binding domain AHA_0127 PF02092 Glycyl-tRNA synthetase beta subunit AHA_0128 PF02091 Glycyl-tRNA synthetase alpha subunit AHA_0129 PF03352 Methyladenine glycosylase AHA_0130 PF02743 Cache domain AHA_0130 PF00672 HAMP domain AHA_0130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_0131 PF00691 OmpA family AHA_0131 PF13488 Glycine zipper AHA_0132 PF01042 Endoribonuclease L-PSP AHA_0133 PF01206 Sulfurtransferase TusA AHA_0135 PF01547 Bacterial extracellular solute-binding protein AHA_0136 PF00512 His Kinase A (phospho-acceptor) domain AHA_0136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0136 PF00672 HAMP domain AHA_0137 PF00072 Response regulator receiver domain AHA_0137 PF00486 Transcriptional regulatory protein, C terminal AHA_0138 PF02803 Thiolase, C-terminal domain AHA_0138 PF00108 Thiolase, N-terminal domain AHA_0139 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AHA_0139 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AHA_0139 PF00378 Enoyl-CoA hydratase/isomerase AHA_0140 PF13193 AMP-binding enzyme C-terminal domain AHA_0140 PF00501 AMP-binding enzyme AHA_0141 PF00557 Metallopeptidase family M24 AHA_0142 PF01205 Uncharacterized protein family UPF0029 AHA_0142 PF09186 Domain of unknown function (DUF1949) AHA_0143 PF02386 Cation transport protein AHA_0144 PF12724 Flavodoxin domain AHA_0149 PF00583 Acetyltransferase (GNAT) family AHA_0149 PF13380 CoA binding domain AHA_0149 PF13607 Succinyl-CoA ligase like flavodoxin domain AHA_0151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0151 PF03466 LysR substrate binding domain AHA_0153 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AHA_0153 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AHA_0154 PF00342 Phosphoglucose isomerase AHA_0156 PF05552 Conserved TM helix AHA_0156 PF00924 Mechanosensitive ion channel AHA_0157 PF00440 Bacterial regulatory proteins, tetR family AHA_0158 PF00692 dUTPase AHA_0159 PF04127 DNA / pantothenate metabolism flavoprotein AHA_0159 PF02441 Flavoprotein AHA_0160 PF04002 RadC-like JAB domain AHA_0161 PF00830 Ribosomal L28 family AHA_0162 PF00471 Ribosomal protein L33 AHA_0164 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AHA_0164 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AHA_0164 PF06827 Zinc finger found in FPG and IleRS AHA_0165 PF04393 Protein of unknown function (DUF535) AHA_0166 PF01467 Cytidylyltransferase-like AHA_0167 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AHA_0168 PF00535 Glycosyl transferase family 2 AHA_0169 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AHA_0170 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AHA_0171 PF03611 PTS system sugar-specific permease component AHA_0173 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHA_0174 PF00356 Bacterial regulatory proteins, lacI family AHA_0174 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHA_0175 PF00107 Zinc-binding dehydrogenase AHA_0175 PF08240 Alcohol dehydrogenase GroES-like domain AHA_0179 PF03748 Flagellar basal body-associated protein FliL AHA_0180 PF04345 Chorismate lyase AHA_0181 PF01040 UbiA prenyltransferase family AHA_0182 PF01553 Acyltransferase AHA_0183 PF01726 LexA DNA binding domain AHA_0183 PF00717 Peptidase S24-like AHA_0186 PF02630 SCO1/SenC AHA_0187 PF01554 MatE AHA_0188 PF00588 SpoU rRNA Methylase family AHA_0189 PF00672 HAMP domain AHA_0189 PF00512 His Kinase A (phospho-acceptor) domain AHA_0189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0189 PF16527 Two-component sensor protein CpxA, periplasmic domain AHA_0190 PF00486 Transcriptional regulatory protein, C terminal AHA_0190 PF00072 Response regulator receiver domain AHA_0191 PF01545 Cation efflux family AHA_0191 PF16916 Dimerisation domain of Zinc Transporter AHA_0192 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_0192 PF06426 Serine acetyltransferase, N-terminal AHA_0194 PF06005 Cell division protein ZapB AHA_0196 PF01612 3'-5' exonuclease AHA_0196 PF01367 5'-3' exonuclease, C-terminal SAM fold AHA_0196 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AHA_0196 PF00476 DNA polymerase family A AHA_0197 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_0204 PF00356 Bacterial regulatory proteins, lacI family AHA_0205 PF02837 Glycosyl hydrolases family 2, sugar binding domain AHA_0205 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AHA_0205 PF02929 Beta galactosidase small chain AHA_0205 PF16353 Domain of unknown function(DUF4981) AHA_0205 PF00703 Glycosyl hydrolases family 2 AHA_0206 PF04074 YhcH/YjgK/YiaL AHA_0207 PF13520 Amino acid permease AHA_0208 PF01588 Putative tRNA binding domain AHA_0209 PF13520 Amino acid permease AHA_0210 PF13593 SBF-like CPA transporter family (DUF4137) AHA_0211 PF03781 Sulfatase-modifying factor enzyme 1 AHA_0211 PF12867 DinB superfamily AHA_0213 PF00756 Putative esterase AHA_0214 PF00107 Zinc-binding dehydrogenase AHA_0214 PF08240 Alcohol dehydrogenase GroES-like domain AHA_0215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0215 PF03466 LysR substrate binding domain AHA_0216 PF02653 Branched-chain amino acid transport system / permease component AHA_0217 PF02653 Branched-chain amino acid transport system / permease component AHA_0218 PF00005 ABC transporter AHA_0219 PF02608 ABC transporter substrate-binding protein PnrA-like AHA_0220 PF13361 UvrD-like helicase C-terminal domain AHA_0220 PF00580 UvrD/REP helicase N-terminal domain AHA_0226 PF14001 YdfZ protein AHA_0231 PF06206 CpeT/CpcT family (DUF1001) AHA_0234 PF01810 LysE type translocator AHA_0236 PF04143 Sulphur transport AHA_0237 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_0237 PF12729 Four helix bundle sensory module for signal transduction AHA_0237 PF00672 HAMP domain AHA_0238 PF00689 Cation transporting ATPase, C-terminus AHA_0238 PF00690 Cation transporter/ATPase, N-terminus AHA_0239 PF01810 LysE type translocator AHA_0240 PF12833 Helix-turn-helix domain AHA_0241 PF00892 EamA-like transporter family AHA_0243 PF00171 Aldehyde dehydrogenase family AHA_0244 PF07883 Cupin domain AHA_0244 PF01381 Helix-turn-helix AHA_0245 PF00202 Aminotransferase class-III AHA_0246 PF00171 Aldehyde dehydrogenase family AHA_0247 PF00958 GMP synthase C terminal domain AHA_0247 PF00117 Glutamine amidotransferase class-I AHA_0247 PF02540 NAD synthase AHA_0248 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AHA_0248 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AHA_0249 PF00294 pfkB family carbohydrate kinase AHA_0250 PF02082 Transcriptional regulator AHA_0253 PF02646 RmuC family AHA_0254 PF02386 Cation transport protein AHA_0255 PF02254 TrkA-N domain AHA_0255 PF02080 TrkA-C domain AHA_0256 PF01189 16S rRNA methyltransferase RsmB/F AHA_0256 PF01029 NusB family AHA_0257 PF00551 Formyl transferase AHA_0257 PF02911 Formyl transferase, C-terminal domain AHA_0258 PF01327 Polypeptide deformylase AHA_0260 PF02481 DNA recombination-mediator protein A AHA_0260 PF17782 DprA winged helix domain AHA_0261 PF04361 Protein of unknown function (DUF494) AHA_0262 PF01396 Topoisomerase DNA binding C4 zinc finger AHA_0263 PF00731 AIR carboxylase AHA_0264 PF01300 Telomere recombination AHA_0265 PF01218 Coproporphyrinogen III oxidase AHA_0266 PF01488 Shikimate / quinate 5-dehydrogenase AHA_0266 PF08501 Shikimate dehydrogenase substrate binding domain AHA_0266 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AHA_0267 PF07369 Protein of unknown function (DUF1488) AHA_0268 PF01926 50S ribosome-binding GTPase AHA_0269 PF00034 Cytochrome c AHA_0270 PF04220 Der GTPase activator (YihI) AHA_0271 PF10675 Protein of unknown function (DUF2489) AHA_0272 PF04055 Radical SAM superfamily AHA_0272 PF06969 HemN C-terminal domain AHA_0273 PF00962 Adenosine/AMP deaminase AHA_0274 PF00072 Response regulator receiver domain AHA_0274 PF00158 Sigma-54 interaction domain AHA_0274 PF02954 Bacterial regulatory protein, Fis family AHA_0275 PF00989 PAS fold AHA_0275 PF00512 His Kinase A (phospho-acceptor) domain AHA_0275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0277 PF00120 Glutamine synthetase, catalytic domain AHA_0277 PF03951 Glutamine synthetase, beta-Grasp domain AHA_0278 PF00679 Elongation factor G C-terminus AHA_0278 PF00009 Elongation factor Tu GTP binding domain AHA_0278 PF03144 Elongation factor Tu domain 2 AHA_0279 PF03631 Virulence factor BrkB AHA_0281 PF02580 D-Tyr-tRNA(Tyr) deacylase AHA_0282 PF09500 Putative thioesterase (yiiD_Cterm) AHA_0282 PF00583 Acetyltransferase (GNAT) family AHA_0284 PF00270 DEAD/DEAH box helicase AHA_0284 PF17191 RecG wedge domain AHA_0284 PF00271 Helicase conserved C-terminal domain AHA_0285 PF13091 PLD-like domain AHA_0286 PF02447 GntP family permease AHA_0287 PF01202 Shikimate kinase AHA_0288 PF00920 Dehydratase family AHA_0289 PF01081 KDPG and KHG aldolase AHA_0290 PF00356 Bacterial regulatory proteins, lacI family AHA_0290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHA_0292 PF01551 Peptidase family M23 AHA_0293 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AHA_0293 PF01676 Metalloenzyme superfamily AHA_0294 PF00581 Rhodanese-like domain AHA_0295 PF02556 Preprotein translocase subunit SecB AHA_0296 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AHA_0296 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AHA_0297 PF01106 NifU-like domain AHA_0297 PF01521 Iron-sulphur cluster biosynthesis AHA_0298 PF00156 Phosphoribosyl transferase domain AHA_0299 PF00561 alpha/beta hydrolase fold AHA_0303 PF16921 Tex protein YqgF-like domain AHA_0303 PF09371 Tex-like protein N-terminal domain AHA_0303 PF17674 HHH domain AHA_0303 PF00575 S1 RNA binding domain AHA_0304 PF01272 Transcription elongation factor, GreA/GreB, C-term AHA_0304 PF03449 Transcription elongation factor, N-terminal AHA_0305 PF00072 Response regulator receiver domain AHA_0305 PF00486 Transcriptional regulatory protein, C terminal AHA_0306 PF00672 HAMP domain AHA_0306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0306 PF00512 His Kinase A (phospho-acceptor) domain AHA_0308 PF00338 Ribosomal protein S10p/S20e AHA_0309 PF00297 Ribosomal protein L3 AHA_0310 PF00573 Ribosomal protein L4/L1 family AHA_0311 PF00276 Ribosomal protein L23 AHA_0312 PF00181 Ribosomal Proteins L2, RNA binding domain AHA_0312 PF03947 Ribosomal Proteins L2, C-terminal domain AHA_0313 PF00203 Ribosomal protein S19 AHA_0314 PF00237 Ribosomal protein L22p/L17e AHA_0315 PF00189 Ribosomal protein S3, C-terminal domain AHA_0315 PF07650 KH domain AHA_0316 PF00252 Ribosomal protein L16p/L10e AHA_0317 PF00831 Ribosomal L29 protein AHA_0318 PF00366 Ribosomal protein S17 AHA_0319 PF00238 Ribosomal protein L14p/L23e AHA_0320 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AHA_0320 PF00467 KOW motif AHA_0321 PF00281 Ribosomal protein L5 AHA_0321 PF00673 ribosomal L5P family C-terminus AHA_0322 PF00253 Ribosomal protein S14p/S29e AHA_0323 PF00410 Ribosomal protein S8 AHA_0324 PF00347 Ribosomal protein L6 AHA_0325 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AHA_0326 PF00333 Ribosomal protein S5, N-terminal domain AHA_0326 PF03719 Ribosomal protein S5, C-terminal domain AHA_0327 PF00327 Ribosomal protein L30p/L7e AHA_0328 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AHA_0329 PF00344 SecY translocase AHA_0330 PF00416 Ribosomal protein S13/S18 AHA_0331 PF00411 Ribosomal protein S11 AHA_0332 PF01479 S4 domain AHA_0332 PF00163 Ribosomal protein S4/S9 N-terminal domain AHA_0333 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AHA_0333 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AHA_0333 PF01000 RNA polymerase Rpb3/RpoA insert domain AHA_0334 PF01196 Ribosomal protein L17 AHA_0342 PF02254 TrkA-N domain AHA_0342 PF00999 Sodium/hydrogen exchanger family AHA_0343 PF02525 Flavodoxin-like fold AHA_0344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0344 PF03466 LysR substrate binding domain AHA_0345 PF00106 short chain dehydrogenase AHA_0348 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AHA_0348 PF00326 Prolyl oligopeptidase family AHA_0353 PF07947 YhhN family AHA_0354 PF07690 Major Facilitator Superfamily AHA_0355 PF13533 Biotin-lipoyl like AHA_0356 PF03466 LysR substrate binding domain AHA_0356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0358 PF00375 Sodium:dicarboxylate symporter family AHA_0359 PF10678 Protein of unknown function (DUF2492) AHA_0360 PF01914 MarC family integral membrane protein AHA_0361 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0361 PF03466 LysR substrate binding domain AHA_0362 PF02416 mttA/Hcf106 family AHA_0364 PF01464 Transglycosylase SLT domain AHA_0365 PF13091 PLD-like domain AHA_0367 PF00440 Bacterial regulatory proteins, tetR family AHA_0368 PF07226 Protein of unknown function (DUF1422) AHA_0371 PF00448 SRP54-type protein, GTPase domain AHA_0371 PF02881 SRP54-type protein, helical bundle domain AHA_0372 PF00005 ABC transporter AHA_0373 PF18075 FtsX extracellular domain AHA_0374 PF00140 Sigma-70 factor, region 1.2 AHA_0374 PF04545 Sigma-70, region 4 AHA_0374 PF04542 Sigma-70 region 2 AHA_0375 PF00484 Carbonic anhydrase AHA_0376 PF00392 Bacterial regulatory proteins, gntR family AHA_0376 PF07702 UTRA domain AHA_0377 PF01979 Amidohydrolase family AHA_0378 PF00491 Arginase family AHA_0379 PF01175 Urocanase Rossmann-like domain AHA_0379 PF17391 Urocanase N-terminal domain AHA_0379 PF17392 Urocanase C-terminal domain AHA_0380 PF00221 Aromatic amino acid lyase AHA_0381 PF01699 Sodium/calcium exchanger protein AHA_0382 PF00563 EAL domain AHA_0382 PF12792 CSS motif domain associated with EAL AHA_0383 PF00563 EAL domain AHA_0383 PF17157 Gammaproteobacterial periplasmic sensor domain AHA_0383 PF00990 Diguanylate cyclase, GGDEF domain AHA_0389 PF00263 Bacterial type II and III secretion system protein AHA_0389 PF03958 Bacterial type II/III secretion system short domain AHA_0392 PF00437 Type II/IV secretion system protein AHA_0392 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AHA_0393 PF00482 Type II secretion system (T2SS), protein F AHA_0395 PF07963 Prokaryotic N-terminal methylation motif AHA_0396 PF07963 Prokaryotic N-terminal methylation motif AHA_0396 PF14245 Type IV pilin PilA AHA_0401 PF04085 rod shape-determining protein MreC AHA_0402 PF04093 rod shape-determining protein MreD AHA_0403 PF02545 Maf-like protein AHA_0404 PF00575 S1 RNA binding domain AHA_0404 PF10150 Ribonuclease E/G family AHA_0405 PF13502 AsmA-like C-terminal region AHA_0405 PF13116 Protein of unknown function AHA_0407 PF00795 Carbon-nitrogen hydrolase AHA_0408 PF01523 Putative modulator of DNA gyrase AHA_0409 PF01418 Helix-turn-helix domain, rpiR family AHA_0409 PF01380 SIS domain AHA_0412 PF02378 Phosphotransferase system, EIIC AHA_0412 PF00367 phosphotransferase system, EIIB AHA_0413 PF13580 SIS domain AHA_0415 PF01914 MarC family integral membrane protein AHA_0416 PF07690 Major Facilitator Superfamily AHA_0417 PF00072 Response regulator receiver domain AHA_0419 PF00072 Response regulator receiver domain AHA_0419 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHA_0419 PF00672 HAMP domain AHA_0419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0419 PF00512 His Kinase A (phospho-acceptor) domain AHA_0419 PF01627 Hpt domain AHA_0420 PF13581 Histidine kinase-like ATPase domain AHA_0421 PF08678 Rsbr N terminal AHA_0421 PF01740 STAS domain AHA_0422 PF13426 PAS domain AHA_0422 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_0422 PF08447 PAS fold AHA_0425 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AHA_0426 PF04228 Putative neutral zinc metallopeptidase AHA_0428 PF08668 HDOD domain AHA_0431 PF00999 Sodium/hydrogen exchanger family AHA_0432 PF02310 B12 binding domain AHA_0432 PF02607 B12 binding domain AHA_0432 PF02965 Vitamin B12 dependent methionine synthase, activation domain AHA_0432 PF00809 Pterin binding enzyme AHA_0432 PF02574 Homocysteine S-methyltransferase AHA_0433 PF18030 RimK PreATP-grasp domain AHA_0433 PF08443 RimK-like ATP-grasp domain AHA_0434 PF05525 Branched-chain amino acid transport protein AHA_0435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0436 PF00486 Transcriptional regulatory protein, C terminal AHA_0436 PF00072 Response regulator receiver domain AHA_0438 PF01117 Aerolysin toxin AHA_0438 PF03440 Aerolysin/Pertussis toxin (APT) domain AHA_0439 PF01964 Radical SAM ThiC family AHA_0439 PF13667 ThiC-associated domain AHA_0440 PF02581 Thiamine monophosphate synthase AHA_0441 PF00899 ThiF family AHA_0443 PF05690 Thiazole biosynthesis protein ThiG AHA_0444 PF06968 Biotin and Thiamin Synthesis associated domain AHA_0444 PF04055 Radical SAM superfamily AHA_0447 PF13036 Peptidoglycan-synthase activator LpoB AHA_0450 PF17151 Periplasmic sensor domain AHA_0450 PF00990 Diguanylate cyclase, GGDEF domain AHA_0452 PF06055 Exopolysaccharide synthesis, ExoD AHA_0454 PF08803 Putative mono-oxygenase ydhR AHA_0457 PF01638 HxlR-like helix-turn-helix AHA_0461 PF07715 TonB-dependent Receptor Plug Domain AHA_0461 PF00593 TonB dependent receptor AHA_0464 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AHA_0465 PF03692 Putative zinc- or iron-chelating domain AHA_0467 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AHA_0468 PF02602 Uroporphyrinogen-III synthase HemD AHA_0469 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AHA_0469 PF03900 Porphobilinogen deaminase, C-terminal domain AHA_0470 PF12633 Adenylate cyclase NT domain AHA_0470 PF01295 Adenylate cyclase, class-I AHA_0471 PF02230 Phospholipase/Carboxylesterase AHA_0472 PF01491 Frataxin-like domain AHA_0473 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AHA_0473 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AHA_0474 PF01678 Diaminopimelate epimerase AHA_0476 PF00589 Phage integrase family AHA_0476 PF02899 Phage integrase, N-terminal SAM-like domain AHA_0477 PF13419 Haloacid dehalogenase-like hydrolase AHA_0479 PF13545 Crp-like helix-turn-helix domain AHA_0479 PF00027 Cyclic nucleotide-binding domain AHA_0481 PF07722 Peptidase C26 AHA_0485 PF00005 ABC transporter AHA_0487 PF00994 Probable molybdopterin binding domain AHA_0487 PF02464 Competence-damaged protein AHA_0488 PF12072 Domain of unknown function (DUF3552) AHA_0488 PF00013 KH domain AHA_0488 PF01966 HD domain AHA_0489 PF04204 Homoserine O-succinyltransferase AHA_0491 PF01037 Lrp/AsnC ligand binding domain AHA_0492 PF00884 Sulfatase AHA_0495 PF02903 Alpha amylase, N-terminal ig-like domain AHA_0495 PF00128 Alpha amylase, catalytic domain AHA_0495 PF16657 Maltogenic Amylase, C-terminal domain AHA_0496 PF02308 MgtC family AHA_0500 PF00106 short chain dehydrogenase AHA_0501 PF03577 Peptidase family C69 AHA_0504 PF00465 Iron-containing alcohol dehydrogenase AHA_0506 PF01053 Cys/Met metabolism PLP-dependent enzyme AHA_0508 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_0508 PF12793 Sugar transport-related sRNA regulator N-term AHA_0511 PF03280 Proteobacterial lipase chaperone protein AHA_0512 PF00561 alpha/beta hydrolase fold AHA_0515 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AHA_0515 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AHA_0516 PF02698 DUF218 domain AHA_0517 PF01752 Collagenase AHA_0517 PF08453 Peptidase family M9 N-terminal AHA_0519 PF00419 Fimbrial protein AHA_0521 PF00577 Outer membrane usher protein AHA_0521 PF13953 PapC C-terminal domain AHA_0521 PF13954 PapC N-terminal domain AHA_0522 PF02753 Pili assembly chaperone PapD, C-terminal domain AHA_0522 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AHA_0523 PF00419 Fimbrial protein AHA_0524 PF00419 Fimbrial protein AHA_0527 PF00501 AMP-binding enzyme AHA_0528 PF13378 Enolase C-terminal domain-like AHA_0529 PF00378 Enoyl-CoA hydratase/isomerase AHA_0530 PF12697 Alpha/beta hydrolase family AHA_0531 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHA_0531 PF16582 Middle domain of thiamine pyrophosphate AHA_0531 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHA_0532 PF00425 chorismate binding enzyme AHA_0533 PF01040 UbiA prenyltransferase family AHA_0538 PF00271 Helicase conserved C-terminal domain AHA_0538 PF03880 DbpA RNA binding domain AHA_0538 PF00270 DEAD/DEAH box helicase AHA_0539 PF07670 Nucleoside recognition AHA_0539 PF07662 Na+ dependent nucleoside transporter C-terminus AHA_0539 PF01773 Na+ dependent nucleoside transporter N-terminus AHA_0540 PF04307 LexA-binding, inner membrane-associated putative hydrolase AHA_0543 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AHA_0544 PF01544 CorA-like Mg2+ transporter protein AHA_0548 PF03471 Transporter associated domain AHA_0548 PF00999 Sodium/hydrogen exchanger family AHA_0548 PF02080 TrkA-C domain AHA_0549 PF05068 Mannitol repressor AHA_0550 PF08125 Mannitol dehydrogenase C-terminal domain AHA_0550 PF01232 Mannitol dehydrogenase Rossmann domain AHA_0551 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHA_0551 PF02378 Phosphotransferase system, EIIC AHA_0551 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHA_0553 PF00440 Bacterial regulatory proteins, tetR family AHA_0554 PF00773 RNB domain AHA_0554 PF08206 Ribonuclease B OB domain AHA_0554 PF17876 Cold shock domain AHA_0555 PF03466 LysR substrate binding domain AHA_0555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0556 PF00765 Autoinducer synthase AHA_0557 PF00196 Bacterial regulatory proteins, luxR family AHA_0557 PF03472 Autoinducer binding domain AHA_0558 PF01810 LysE type translocator AHA_0559 PF02872 5'-nucleotidase, C-terminal domain AHA_0559 PF00149 Calcineurin-like phosphoesterase AHA_0560 PF05433 Glycine zipper 2TM domain AHA_0561 PF00583 Acetyltransferase (GNAT) family AHA_0562 PF11756 Nitrous oxide-stimulated promoter AHA_0563 PF01321 Creatinase/Prolidase N-terminal domain AHA_0563 PF00557 Metallopeptidase family M24 AHA_0564 PF00392 Bacterial regulatory proteins, gntR family AHA_0565 PF01293 Phosphoenolpyruvate carboxykinase AHA_0566 PF01430 Hsp33 protein AHA_0567 PF01479 S4 domain AHA_0568 PF11356 Type II secretion system protein C AHA_0569 PF00263 Bacterial type II and III secretion system protein AHA_0569 PF03958 Bacterial type II/III secretion system short domain AHA_0570 PF00437 Type II/IV secretion system protein AHA_0571 PF00482 Type II secretion system (T2SS), protein F AHA_0572 PF08334 Type II secretion system (T2SS), protein G AHA_0572 PF07963 Prokaryotic N-terminal methylation motif AHA_0573 PF12019 Type II transport protein GspH AHA_0573 PF07963 Prokaryotic N-terminal methylation motif AHA_0574 PF02501 Type II secretion system (T2SS), protein I AHA_0574 PF07963 Prokaryotic N-terminal methylation motif AHA_0575 PF07963 Prokaryotic N-terminal methylation motif AHA_0575 PF11612 Type II secretion system (T2SS), protein J AHA_0576 PF03934 Type II secretion system (T2SS), protein K AHA_0577 PF12693 GspL periplasmic domain AHA_0577 PF05134 Type II secretion system (T2SS), protein L AHA_0578 PF04612 Type II secretion system (T2SS), protein M AHA_0579 PF01203 Type II secretion system (T2SS), protein N AHA_0580 PF00196 Bacterial regulatory proteins, luxR family AHA_0581 PF01479 S4 domain AHA_0581 PF00579 tRNA synthetases class I (W and Y) AHA_0582 PF13419 Haloacid dehalogenase-like hydrolase AHA_0583 PF00293 NUDIX domain AHA_0584 PF00459 Inositol monophosphatase family AHA_0585 PF03222 Tryptophan/tyrosine permease family AHA_0586 PF01588 Putative tRNA binding domain AHA_0587 PF06445 GyrI-like small molecule binding domain AHA_0587 PF12833 Helix-turn-helix domain AHA_0588 PF01340 Met Apo-repressor, MetJ AHA_0589 PF01053 Cys/Met metabolism PLP-dependent enzyme AHA_0590 PF00742 Homoserine dehydrogenase AHA_0590 PF03447 Homoserine dehydrogenase, NAD binding domain AHA_0590 PF00696 Amino acid kinase family AHA_0591 PF00311 Phosphoenolpyruvate carboxylase AHA_0592 PF07687 Peptidase dimerisation domain AHA_0592 PF01546 Peptidase family M20/M25/M40 AHA_0593 PF02774 Semialdehyde dehydrogenase, dimerisation domain AHA_0593 PF01118 Semialdehyde dehydrogenase, NAD binding domain AHA_0594 PF00696 Amino acid kinase family AHA_0595 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHA_0595 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHA_0596 PF00764 Arginosuccinate synthase AHA_0597 PF00206 Lyase AHA_0597 PF14698 Argininosuccinate lyase C-terminal AHA_0598 PF06114 IrrE N-terminal-like domain AHA_0602 PF12464 Maltose acetyltransferase AHA_0602 PF14602 Hexapeptide repeat of succinyl-transferase AHA_0603 PF13194 Domain of unknown function (DUF4010) AHA_0606 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0607 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0608 PF12857 TOBE-like domain AHA_0608 PF00005 ABC transporter AHA_0609 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0609 PF03466 LysR substrate binding domain AHA_0610 PF18416 N-acetylglucosamine binding protein domain 2 AHA_0610 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AHA_0611 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_0611 PF08269 Cache domain AHA_0617 PF07676 WD40-like Beta Propeller Repeat AHA_0617 PF14685 Tricorn protease PDZ domain AHA_0617 PF03572 Peptidase family S41 AHA_0617 PF14684 Tricorn protease C1 domain AHA_0620 PF11230 Protein of unknown function (DUF3029) AHA_0621 PF04055 Radical SAM superfamily AHA_0623 PF03466 LysR substrate binding domain AHA_0623 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0624 PF00155 Aminotransferase class I and II AHA_0625 PF02583 Metal-sensitive transcriptional repressor AHA_0628 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHA_0628 PF18494 Pullulanase Ins domain AHA_0628 PF03714 Bacterial pullanase-associated domain AHA_0628 PF11852 Domain of unknown function (DUF3372) AHA_0628 PF17967 Pullulanase N2 domain AHA_0629 PF00403 Heavy-metal-associated domain AHA_0630 PF08534 Redoxin AHA_0632 PF00270 DEAD/DEAH box helicase AHA_0632 PF00271 Helicase conserved C-terminal domain AHA_0635 PF03372 Endonuclease/Exonuclease/phosphatase family AHA_0636 PF08447 PAS fold AHA_0636 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_0639 PF06062 Uncharacterised protein family (UPF0231) AHA_0640 PF17853 GGDEF-like domain AHA_0640 PF05651 Putative sugar diacid recognition AHA_0640 PF13556 PucR C-terminal helix-turn-helix domain AHA_0641 PF02447 GntP family permease AHA_0642 PF02595 Glycerate kinase family AHA_0644 PF00255 Glutathione peroxidase AHA_0645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0645 PF03466 LysR substrate binding domain AHA_0646 PF07670 Nucleoside recognition AHA_0646 PF01773 Na+ dependent nucleoside transporter N-terminus AHA_0646 PF07662 Na+ dependent nucleoside transporter C-terminus AHA_0647 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AHA_0647 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AHA_0648 PF00472 RF-1 domain AHA_0649 PF00543 Nitrogen regulatory protein P-II AHA_0650 PF13416 Bacterial extracellular solute-binding protein AHA_0652 PF08402 TOBE domain AHA_0652 PF00005 ABC transporter AHA_0653 PF04261 Dyp-type peroxidase family AHA_0654 PF02863 Arginine repressor, C-terminal domain AHA_0654 PF01316 Arginine repressor, DNA binding domain AHA_0655 PF00005 ABC transporter AHA_0656 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_0657 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0658 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0659 PF00056 lactate/malate dehydrogenase, NAD binding domain AHA_0659 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AHA_0660 PF08238 Sel1 repeat AHA_0661 PF00175 Oxidoreductase NAD-binding domain AHA_0661 PF00970 Oxidoreductase FAD-binding domain AHA_0661 PF00042 Globin AHA_0662 PF02082 Transcriptional regulator AHA_0663 PF00571 CBS domain AHA_0663 PF01595 Cyclin M transmembrane N-terminal domain AHA_0663 PF03471 Transporter associated domain AHA_0664 PF01578 Cytochrome C assembly protein AHA_0665 PF02881 SRP54-type protein, helical bundle domain AHA_0665 PF02978 Signal peptide binding domain AHA_0665 PF00448 SRP54-type protein, GTPase domain AHA_0666 PF00886 Ribosomal protein S16 AHA_0667 PF01782 RimM N-terminal domain AHA_0667 PF05239 PRC-barrel domain AHA_0668 PF01746 tRNA (Guanine-1)-methyltransferase AHA_0669 PF01245 Ribosomal protein L19 AHA_0671 PF02976 DNA mismatch repair enzyme MutH AHA_0672 PF00293 NUDIX domain AHA_0673 PF01590 GAF domain AHA_0673 PF05524 PEP-utilising enzyme, N-terminal AHA_0673 PF00391 PEP-utilising enzyme, mobile domain AHA_0673 PF02896 PEP-utilising enzyme, TIM barrel domain AHA_0674 PF01790 Prolipoprotein diacylglyceryl transferase AHA_0675 PF00303 Thymidylate synthase AHA_0676 PF06965 Na+/H+ antiporter 1 AHA_0677 PF03466 LysR substrate binding domain AHA_0677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0678 PF01022 Bacterial regulatory protein, arsR family AHA_0679 PF01649 Ribosomal protein S20 AHA_0680 PF03023 Lipid II flippase MurJ AHA_0681 PF01687 Riboflavin kinase AHA_0681 PF06574 FAD synthetase AHA_0682 PF06827 Zinc finger found in FPG and IleRS AHA_0682 PF00133 tRNA synthetases class I (I, L, M and V) AHA_0682 PF08264 Anticodon-binding domain of tRNA AHA_0683 PF01252 Signal peptidase (SPase) II AHA_0684 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHA_0685 PF02401 LytB protein AHA_0686 PF12019 Type II transport protein GspH AHA_0686 PF07963 Prokaryotic N-terminal methylation motif AHA_0690 PF05567 Neisseria PilC beta-propeller domain AHA_0691 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AHA_0691 PF07963 Prokaryotic N-terminal methylation motif AHA_0697 PF02540 NAD synthase AHA_0697 PF00795 Carbon-nitrogen hydrolase AHA_0698 PF00543 Nitrogen regulatory protein P-II AHA_0700 PF02664 S-Ribosylhomocysteinase (LuxS) AHA_0701 PF00990 Diguanylate cyclase, GGDEF domain AHA_0702 PF00773 RNB domain AHA_0702 PF00575 S1 RNA binding domain AHA_0702 PF17876 Cold shock domain AHA_0702 PF08461 Ribonuclease R winged-helix domain AHA_0702 PF08206 Ribonuclease B OB domain AHA_0703 PF00588 SpoU rRNA Methylase family AHA_0703 PF08032 RNA 2'-O ribose methyltransferase substrate binding AHA_0705 PF13673 Acetyltransferase (GNAT) domain AHA_0709 PF01566 Natural resistance-associated macrophage protein AHA_0710 PF01250 Ribosomal protein S6 AHA_0711 PF01084 Ribosomal protein S18 AHA_0712 PF01281 Ribosomal protein L9, N-terminal domain AHA_0712 PF03948 Ribosomal protein L9, C-terminal domain AHA_0713 PF00175 Oxidoreductase NAD-binding domain AHA_0713 PF00970 Oxidoreductase FAD-binding domain AHA_0717 PF02801 Beta-ketoacyl synthase, C-terminal domain AHA_0717 PF08659 KR domain AHA_0717 PF00550 Phosphopantetheine attachment site AHA_0717 PF14765 Polyketide synthase dehydratase AHA_0717 PF00109 Beta-ketoacyl synthase, N-terminal domain AHA_0717 PF16197 Ketoacyl-synthetase C-terminal extension AHA_0717 PF08990 Erythronolide synthase docking AHA_0717 PF08240 Alcohol dehydrogenase GroES-like domain AHA_0717 PF00698 Acyl transferase domain AHA_0718 PF09335 SNARE associated Golgi protein AHA_0719 PF00675 Insulinase (Peptidase family M16) AHA_0719 PF05193 Peptidase M16 inactive domain AHA_0720 PF04262 Glutamate-cysteine ligase AHA_0722 PF00501 AMP-binding enzyme AHA_0724 PF00583 Acetyltransferase (GNAT) family AHA_0725 PF17868 AAA lid domain AHA_0725 PF12592 Protein of unknown function (DUF3763) AHA_0725 PF07728 AAA domain (dynein-related subfamily) AHA_0726 PF05762 VWA domain containing CoxE-like protein AHA_0727 PF00990 Diguanylate cyclase, GGDEF domain AHA_0729 PF00072 Response regulator receiver domain AHA_0729 PF00990 Diguanylate cyclase, GGDEF domain AHA_0730 PF00009 Elongation factor Tu GTP binding domain AHA_0730 PF16658 Class II release factor RF3, C-terminal domain AHA_0730 PF03144 Elongation factor Tu domain 2 AHA_0734 PF00583 Acetyltransferase (GNAT) family AHA_0735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AHA_0737 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0737 PF03466 LysR substrate binding domain AHA_0738 PF04371 Porphyromonas-type peptidyl-arginine deiminase AHA_0739 PF01425 Amidase AHA_0740 PF00753 Metallo-beta-lactamase superfamily AHA_0742 PF00271 Helicase conserved C-terminal domain AHA_0742 PF00270 DEAD/DEAH box helicase AHA_0743 PF03466 LysR substrate binding domain AHA_0743 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0746 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AHA_0749 PF00445 Ribonuclease T2 family AHA_0751 PF03060 Nitronate monooxygenase AHA_0757 PF00293 NUDIX domain AHA_0757 PF09297 NADH pyrophosphatase zinc ribbon domain AHA_0757 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AHA_0758 PF00672 HAMP domain AHA_0758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0758 PF00512 His Kinase A (phospho-acceptor) domain AHA_0758 PF16527 Two-component sensor protein CpxA, periplasmic domain AHA_0759 PF00072 Response regulator receiver domain AHA_0759 PF00486 Transcriptional regulatory protein, C terminal AHA_0760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_0761 PF02687 FtsX-like permease family AHA_0761 PF00005 ABC transporter AHA_0761 PF12704 MacB-like periplasmic core domain AHA_0762 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_0763 PF00005 ABC transporter AHA_0764 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0765 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0766 PF00291 Pyridoxal-phosphate dependent enzyme AHA_0767 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AHA_0767 PF00326 Prolyl oligopeptidase family AHA_0771 PF08335 GlnD PII-uridylyltransferase AHA_0771 PF03710 Glutamate-ammonia ligase adenylyltransferase AHA_0773 PF00672 HAMP domain AHA_0773 PF02743 Cache domain AHA_0773 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_0774 PF00520 Ion transport protein AHA_0774 PF00027 Cyclic nucleotide-binding domain AHA_0775 PF08239 Bacterial SH3 domain AHA_0776 PF01619 Proline dehydrogenase AHA_0776 PF00171 Aldehyde dehydrogenase family AHA_0776 PF14850 DNA-binding domain of Proline dehydrogenase AHA_0776 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AHA_0777 PF00293 NUDIX domain AHA_0777 PF09297 NADH pyrophosphatase zinc ribbon domain AHA_0778 PF01208 Uroporphyrinogen decarboxylase (URO-D) AHA_0779 PF00480 ROK family AHA_0780 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHA_0780 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AHA_0781 PF00162 Phosphoglycerate kinase AHA_0782 PF01116 Fructose-bisphosphate aldolase class-II AHA_0783 PF01266 FAD dependent oxidoreductase AHA_0785 PF02683 Cytochrome C biogenesis protein transmembrane region AHA_0785 PF11412 Disulphide bond corrector protein DsbC AHA_0786 PF03091 CutA1 divalent ion tolerance protein AHA_0789 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0789 PF03466 LysR substrate binding domain AHA_0790 PF01571 Aminomethyltransferase folate-binding domain AHA_0791 PF03937 Flavinator of succinate dehydrogenase AHA_0793 PF02910 Fumarate reductase flavoprotein C-term AHA_0793 PF00890 FAD binding domain AHA_0794 PF04542 Sigma-70 region 2 AHA_0794 PF08281 Sigma-70, region 4 AHA_0795 PF03872 Anti sigma-E protein RseA, N-terminal domain AHA_0795 PF03873 Anti sigma-E protein RseA, C-terminal domain AHA_0796 PF03888 MucB/RseB N-terminal domain AHA_0796 PF17188 MucB/RseB C-terminal domain AHA_0798 PF00679 Elongation factor G C-terminus AHA_0798 PF00009 Elongation factor Tu GTP binding domain AHA_0798 PF03144 Elongation factor Tu domain 2 AHA_0798 PF06421 GTP-binding protein LepA C-terminus AHA_0799 PF10502 Signal peptidase, peptidase S26 AHA_0800 PF14622 Ribonuclease-III-like AHA_0800 PF00035 Double-stranded RNA binding motif AHA_0801 PF07650 KH domain AHA_0801 PF01926 50S ribosome-binding GTPase AHA_0802 PF11967 Recombination protein O N terminal AHA_0802 PF02565 Recombination protein O C terminal AHA_0803 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AHA_0805 PF01116 Fructose-bisphosphate aldolase class-II AHA_0806 PF01979 Amidohydrolase family AHA_0807 PF03610 PTS system fructose IIA component AHA_0808 PF03613 PTS system mannose/fructose/sorbose family IID component AHA_0809 PF03609 PTS system sorbose-specific iic component AHA_0810 PF03830 PTS system sorbose subfamily IIB component AHA_0811 PF01380 SIS domain AHA_0812 PF08013 Tagatose 6 phosphate kinase AHA_0813 PF08220 DeoR-like helix-turn-helix domain AHA_0813 PF00455 DeoR C terminal sensor domain AHA_0814 PF01510 N-acetylmuramoyl-L-alanine amidase AHA_0815 PF07308 Protein of unknown function (DUF1456) AHA_0816 PF00672 HAMP domain AHA_0816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0816 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHA_0816 PF00512 His Kinase A (phospho-acceptor) domain AHA_0816 PF00072 Response regulator receiver domain AHA_0816 PF01627 Hpt domain AHA_0817 PF05958 tRNA (Uracil-5-)-methyltransferase AHA_0817 PF01938 TRAM domain AHA_0818 PF02824 TGS domain AHA_0818 PF04607 Region found in RelA / SpoT proteins AHA_0818 PF13291 ACT domain AHA_0819 PF03819 MazG nucleotide pyrophosphohydrolase domain AHA_0820 PF00117 Glutamine amidotransferase class-I AHA_0820 PF06418 CTP synthase N-terminus AHA_0821 PF03952 Enolase, N-terminal domain AHA_0821 PF00113 Enolase, C-terminal TIM barrel domain AHA_0822 PF04977 Septum formation initiator AHA_0823 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AHA_0824 PF02542 YgbB family AHA_0825 PF01142 tRNA pseudouridine synthase D (TruD) AHA_0826 PF01975 Survival protein SurE AHA_0828 PF09335 SNARE associated Golgi protein AHA_0829 PF01551 Peptidase family M23 AHA_0829 PF01476 LysM domain AHA_0830 PF04545 Sigma-70, region 4 AHA_0830 PF04542 Sigma-70 region 2 AHA_0830 PF00140 Sigma-70 factor, region 1.2 AHA_0830 PF04539 Sigma-70 region 3 AHA_0831 PF00814 Glycoprotease family AHA_0832 PF01165 Ribosomal protein S21 AHA_0833 PF09424 Yqey-like protein AHA_0834 PF01807 CHC2 zinc finger AHA_0834 PF08275 DNA primase catalytic core, N-terminal domain AHA_0834 PF08278 DNA primase DnaG DnaB-binding AHA_0834 PF10410 DnaB-helicase binding domain of primase AHA_0835 PF04542 Sigma-70 region 2 AHA_0835 PF04546 Sigma-70, non-essential region AHA_0835 PF03979 Sigma-70 factor, region 1.1 AHA_0835 PF04539 Sigma-70 region 3 AHA_0835 PF04545 Sigma-70, region 4 AHA_0835 PF00140 Sigma-70 factor, region 1.2 AHA_0837 PF00128 Alpha amylase, catalytic domain AHA_0840 PF02843 Phosphoribosylglycinamide synthetase, C domain AHA_0840 PF02844 Phosphoribosylglycinamide synthetase, N domain AHA_0840 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AHA_0841 PF01808 AICARFT/IMPCHase bienzyme AHA_0841 PF02142 MGS-like domain AHA_0842 PF13411 MerR HTH family regulatory protein AHA_0843 PF01872 RibD C-terminal domain AHA_0844 PF03889 Alternative ribosome-rescue factor A AHA_0845 PF06969 HemN C-terminal domain AHA_0845 PF04055 Radical SAM superfamily AHA_0846 PF01725 Ham1 family AHA_0847 PF07690 Major Facilitator Superfamily AHA_0848 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AHA_0848 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHA_0849 PF13302 Acetyltransferase (GNAT) domain AHA_0851 PF07504 Fungalysin/Thermolysin Propeptide Motif AHA_0851 PF03413 Peptidase propeptide and YPEB domain AHA_0851 PF01447 Thermolysin metallopeptidase, catalytic domain AHA_0851 PF02868 Thermolysin metallopeptidase, alpha-helical domain AHA_0851 PF04151 Bacterial pre-peptidase C-terminal domain AHA_0852 PF03466 LysR substrate binding domain AHA_0852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0853 PF07690 Major Facilitator Superfamily AHA_0854 PF00267 Gram-negative porin AHA_0855 PF03605 Anaerobic c4-dicarboxylate membrane transporter AHA_0856 PF10415 Fumarase C C-terminus AHA_0856 PF00206 Lyase AHA_0857 PF04186 FxsA cytoplasmic membrane protein AHA_0858 PF01554 MatE AHA_0859 PF00166 Chaperonin 10 Kd subunit AHA_0860 PF00118 TCP-1/cpn60 chaperonin family AHA_0862 PF03707 Bacterial signalling protein N terminal repeat AHA_0862 PF13188 PAS domain AHA_0862 PF00563 EAL domain AHA_0862 PF00990 Diguanylate cyclase, GGDEF domain AHA_0863 PF00849 RNA pseudouridylate synthase AHA_0864 PF18337 RapA N-terminal Tudor like domain AHA_0864 PF18339 RapA N-terminal Tudor like domain 1 AHA_0864 PF12137 RNA polymerase recycling family C-terminal AHA_0864 PF00271 Helicase conserved C-terminal domain AHA_0864 PF00176 SNF2 family N-terminal domain AHA_0870 PF02867 Ribonucleotide reductase, barrel domain AHA_0870 PF08343 Ribonucleotide reductase N-terminal AHA_0870 PF00317 Ribonucleotide reductase, all-alpha domain AHA_0872 PF13638 PIN domain AHA_0872 PF02562 PhoH-like protein AHA_0874 PF00005 ABC transporter AHA_0875 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0879 PF00694 Aconitase C-terminal domain AHA_0880 PF00330 Aconitase family (aconitate hydratase) AHA_0881 PF00180 Isocitrate/isopropylmalate dehydrogenase AHA_0882 PF00682 HMGL-like AHA_0882 PF08502 LeuA allosteric (dimerisation) domain AHA_0884 PF01569 PAP2 superfamily AHA_0885 PF04101 Glycosyltransferase family 28 C-terminal domain AHA_0885 PF03033 Glycosyltransferase family 28 N-terminal domain AHA_0887 PF00205 Thiamine pyrophosphate enzyme, central domain AHA_0887 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHA_0887 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHA_0889 PF10369 Small subunit of acetolactate synthase AHA_0890 PF01515 Phosphate acetyl/butaryl transferase AHA_0890 PF07085 DRTGG domain AHA_0891 PF00871 Acetokinase family AHA_0892 PF04217 Protein of unknown function, DUF412 AHA_0893 PF03887 YfbU domain AHA_0894 PF00578 AhpC/TSA family AHA_0895 PF01842 ACT domain AHA_0896 PF00701 Dihydrodipicolinate synthetase family AHA_0897 PF06804 NlpB/DapX lipoprotein AHA_0898 PF01259 SAICAR synthetase AHA_0900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0900 PF03466 LysR substrate binding domain AHA_0901 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AHA_0905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0905 PF00072 Response regulator receiver domain AHA_0905 PF18415 Histidine kinase receptor ArcB trans-membrane domain AHA_0905 PF01627 Hpt domain AHA_0905 PF00989 PAS fold AHA_0905 PF00512 His Kinase A (phospho-acceptor) domain AHA_0906 PF13286 Phosphohydrolase-associated domain AHA_0906 PF01966 HD domain AHA_0908 PF00512 His Kinase A (phospho-acceptor) domain AHA_0908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0908 PF00072 Response regulator receiver domain AHA_0908 PF09456 RcsC Alpha-Beta-Loop (ABL) AHA_0909 PF00990 Diguanylate cyclase, GGDEF domain AHA_0909 PF00563 EAL domain AHA_0909 PF03707 Bacterial signalling protein N terminal repeat AHA_0910 PF12729 Four helix bundle sensory module for signal transduction AHA_0910 PF00672 HAMP domain AHA_0910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_0912 PF02357 Transcription termination factor nusG AHA_0913 PF03180 NLPA lipoprotein AHA_0914 PF00528 Binding-protein-dependent transport system inner membrane component AHA_0915 PF00005 ABC transporter AHA_0915 PF09383 NIL domain AHA_0917 PF00480 ROK family AHA_0918 PF08331 Domain of unknown function (DUF1730) AHA_0919 PF01256 Carbohydrate kinase AHA_0919 PF03853 YjeF-related protein N-terminus AHA_0920 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AHA_0921 PF01520 N-acetylmuramoyl-L-alanine amidase AHA_0922 PF01119 DNA mismatch repair protein, C-terminal domain AHA_0922 PF08676 MutL C terminal dimerisation domain AHA_0924 PF17209 Hfq protein AHA_0925 PF13167 GTP-binding GTPase N-terminal AHA_0925 PF01926 50S ribosome-binding GTPase AHA_0925 PF16360 GTP-binding GTPase Middle Region AHA_0926 PF12221 Bacterial membrane protein N terminal AHA_0926 PF01145 SPFH domain / Band 7 family AHA_0927 PF01145 SPFH domain / Band 7 family AHA_0928 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AHA_0929 PF00348 Polyprenyl synthetase AHA_0930 PF00829 Ribosomal prokaryotic L21 protein AHA_0931 PF01016 Ribosomal L27 protein AHA_0932 PF01926 50S ribosome-binding GTPase AHA_0932 PF01018 GTP1/OBG AHA_0933 PF07670 Nucleoside recognition AHA_0938 PF00296 Luciferase-like monooxygenase AHA_0940 PF00149 Calcineurin-like phosphoesterase AHA_0941 PF04379 ApaG domain AHA_0942 PF00398 Ribosomal RNA adenine dimethylase AHA_0943 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AHA_0944 PF00639 PPIC-type PPIASE domain AHA_0944 PF09312 SurA N-terminal domain AHA_0945 PF04453 LPS transport system D AHA_0945 PF03968 OstA-like protein AHA_0946 PF01636 Phosphotransferase enzyme family AHA_0947 PF00483 Nucleotidyl transferase AHA_0948 PF05099 Tellurite resistance protein TerB AHA_0948 PF00226 DnaJ domain AHA_0949 PF00860 Permease family AHA_0950 PF12848 ABC transporter AHA_0950 PF00005 ABC transporter AHA_0953 PF01048 Phosphorylase superfamily AHA_0954 PF01464 Transglycosylase SLT domain AHA_0957 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_0957 PF03466 LysR substrate binding domain AHA_0958 PF01048 Phosphorylase superfamily AHA_0959 PF01773 Na+ dependent nucleoside transporter N-terminus AHA_0959 PF07662 Na+ dependent nucleoside transporter C-terminus AHA_0959 PF07670 Nucleoside recognition AHA_0960 PF01791 DeoC/LacD family aldolase AHA_0962 PF01370 NAD dependent epimerase/dehydratase family AHA_0964 PF00005 ABC transporter AHA_0965 PF01032 FecCD transport family AHA_0967 PF06228 Haem utilisation ChuX/HutX AHA_0968 PF01243 Pyridoxamine 5'-phosphate oxidase AHA_0972 PF07715 TonB-dependent Receptor Plug Domain AHA_0972 PF00593 TonB dependent receptor AHA_0973 PF12832 MFS_1 like family AHA_0974 PF13443 Cro/C1-type HTH DNA-binding domain AHA_0976 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_0976 PF00989 PAS fold AHA_0976 PF00512 His Kinase A (phospho-acceptor) domain AHA_0977 PF08329 Chitinase A, N-terminal domain AHA_0977 PF00704 Glycosyl hydrolases family 18 AHA_0978 PF12561 ToxR activated gene A lipoprotein domain AHA_0978 PF17945 Beta/Gamma crystallin AHA_0979 PF18416 N-acetylglucosamine binding protein domain 2 AHA_0979 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AHA_0980 PF13847 Methyltransferase domain AHA_0981 PF13545 Crp-like helix-turn-helix domain AHA_0981 PF00027 Cyclic nucleotide-binding domain AHA_0982 PF02566 OsmC-like protein AHA_0985 PF00485 Phosphoribulokinase / Uridine kinase family AHA_0986 PF00893 Small Multidrug Resistance protein AHA_0987 PF00892 EamA-like transporter family AHA_0988 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AHA_0989 PF01522 Polysaccharide deacetylase AHA_0990 PF00551 Formyl transferase AHA_0990 PF02911 Formyl transferase, C-terminal domain AHA_0990 PF01370 NAD dependent epimerase/dehydratase family AHA_0991 PF00535 Glycosyl transferase family 2 AHA_0992 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AHA_0993 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AHA_0993 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AHA_0993 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AHA_0994 PF06794 Uncharacterised protein family (UPF0270) AHA_0995 PF00561 alpha/beta hydrolase fold AHA_0996 PF00563 EAL domain AHA_0996 PF01590 GAF domain AHA_0996 PF00990 Diguanylate cyclase, GGDEF domain AHA_0996 PF00360 Phytochrome region AHA_0997 PF00072 Response regulator receiver domain AHA_0997 PF01584 CheW-like domain AHA_0999 PF09526 Probable metal-binding protein (DUF2387) AHA_1000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHA_1001 PF04102 SlyX AHA_1003 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHA_1003 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AHA_1004 PF00072 Response regulator receiver domain AHA_1004 PF00158 Sigma-54 interaction domain AHA_1004 PF02954 Bacterial regulatory protein, Fis family AHA_1008 PF02872 5'-nucleotidase, C-terminal domain AHA_1008 PF00149 Calcineurin-like phosphoesterase AHA_1009 PF12792 CSS motif domain associated with EAL AHA_1009 PF00563 EAL domain AHA_1012 PF03796 DnaB-like helicase C terminal domain AHA_1012 PF00772 DnaB-like helicase N terminal domain AHA_1013 PF00772 DnaB-like helicase N terminal domain AHA_1013 PF03796 DnaB-like helicase C terminal domain AHA_1014 PF00772 DnaB-like helicase N terminal domain AHA_1014 PF03796 DnaB-like helicase C terminal domain AHA_1015 PF00842 Alanine racemase, C-terminal domain AHA_1015 PF01168 Alanine racemase, N-terminal domain AHA_1016 PF12838 4Fe-4S dicluster domain AHA_1017 PF16325 Peptidase family U32 C-terminal domain AHA_1017 PF01136 Peptidase family U32 AHA_1018 PF00989 PAS fold AHA_1018 PF00990 Diguanylate cyclase, GGDEF domain AHA_1018 PF00563 EAL domain AHA_1018 PF01590 GAF domain AHA_1021 PF16967 E-set like domain AHA_1021 PF15976 CS1-pili formation C-terminal AHA_1023 PF00072 Response regulator receiver domain AHA_1023 PF00196 Bacterial regulatory proteins, luxR family AHA_1025 PF00512 His Kinase A (phospho-acceptor) domain AHA_1025 PF01627 Hpt domain AHA_1025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHA_1025 PF00072 Response regulator receiver domain AHA_1025 PF00672 HAMP domain AHA_1029 PF00266 Aminotransferase class-V AHA_1030 PF01339 CheB methylesterase AHA_1030 PF00072 Response regulator receiver domain AHA_1031 PF03975 CheD chemotactic sensory transduction AHA_1032 PF03705 CheR methyltransferase, all-alpha domain AHA_1032 PF01739 CheR methyltransferase, SAM binding domain AHA_1033 PF02203 Tar ligand binding domain homologue AHA_1033 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1033 PF00672 HAMP domain AHA_1034 PF01584 CheW-like domain AHA_1035 PF00672 HAMP domain AHA_1035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1035 PF12729 Four helix bundle sensory module for signal transduction AHA_1036 PF02895 Signal transducing histidine kinase, homodimeric domain AHA_1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1036 PF07194 P2 response regulator binding domain AHA_1036 PF01627 Hpt domain AHA_1036 PF01584 CheW-like domain AHA_1038 PF00072 Response regulator receiver domain AHA_1039 PF02743 Cache domain AHA_1039 PF00672 HAMP domain AHA_1039 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AHA_1040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AHA_1041 PF03466 LysR substrate binding domain AHA_1041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1042 PF01810 LysE type translocator AHA_1043 PF01136 Peptidase family U32 AHA_1043 PF12392 Collagenase AHA_1045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AHA_1045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AHA_1046 PF12833 Helix-turn-helix domain AHA_1046 PF00730 HhH-GPD superfamily base excision DNA repair protein AHA_1046 PF06029 AlkA N-terminal domain AHA_1046 PF02805 Metal binding domain of Ada AHA_1048 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AHA_1052 PF00106 short chain dehydrogenase AHA_1053 PF03573 outer membrane porin, OprD family AHA_1054 PF02743 Cache domain AHA_1054 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1054 PF00672 HAMP domain AHA_1056 PF02447 GntP family permease AHA_1057 PF01370 NAD dependent epimerase/dehydratase family AHA_1058 PF01261 Xylose isomerase-like TIM barrel AHA_1059 PF00596 Class II Aldolase and Adducin N-terminal domain AHA_1060 PF17042 Nucleotide-binding C-terminal domain AHA_1060 PF07005 Sugar-binding N-terminal domain AHA_1061 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AHA_1061 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AHA_1062 PF08220 DeoR-like helix-turn-helix domain AHA_1062 PF00455 DeoR C terminal sensor domain AHA_1063 PF13086 AAA domain AHA_1063 PF13087 AAA domain AHA_1063 PF13195 Protein of unknown function (DUF4011) AHA_1064 PF11924 Inverse autotransporter, beta-domain AHA_1064 PF02369 Bacterial Ig-like domain (group 1) AHA_1064 PF09134 Invasin, domain 3 AHA_1068 PF08448 PAS fold AHA_1068 PF08447 PAS fold AHA_1068 PF00563 EAL domain AHA_1068 PF00990 Diguanylate cyclase, GGDEF domain AHA_1070 PF00486 Transcriptional regulatory protein, C terminal AHA_1070 PF18500 CadC C-terminal domain 1 AHA_1072 PF11798 IMS family HHH motif AHA_1072 PF11799 impB/mucB/samB family C-terminal domain AHA_1072 PF00817 impB/mucB/samB family AHA_1072 PF13438 Domain of unknown function (DUF4113) AHA_1073 PF00717 Peptidase S24-like AHA_1077 PF00145 C-5 cytosine-specific DNA methylase AHA_1079 PF04002 RadC-like JAB domain AHA_1086 PF09588 YqaJ-like viral recombinase domain AHA_1092 PF01817 Chorismate mutase type II AHA_1092 PF00800 Prephenate dehydratase AHA_1099 PF08349 Protein of unknown function (DUF1722) AHA_1100 PF13411 MerR HTH family regulatory protein AHA_1101 PF00875 DNA photolyase AHA_1101 PF03441 FAD binding domain of DNA photolyase AHA_1103 PF00106 short chain dehydrogenase AHA_1110 PF00210 Ferritin-like domain AHA_1111 PF03063 Prismane/CO dehydrogenase family AHA_1112 PF00175 Oxidoreductase NAD-binding domain AHA_1112 PF00970 Oxidoreductase FAD-binding domain AHA_1112 PF00042 Globin AHA_1113 PF16363 GDP-mannose 4,6 dehydratase AHA_1114 PF13462 Thioredoxin AHA_1114 PF06965 Na+/H+ antiporter 1 AHA_1117 PF00196 Bacterial regulatory proteins, luxR family AHA_1117 PF03472 Autoinducer binding domain AHA_1118 PF05638 Type VI secretion system effector, Hcp AHA_1119 PF04717 Type VI secretion system, phage-baseplate injector AHA_1124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1124 PF03466 LysR substrate binding domain AHA_1125 PF03306 Alpha-acetolactate decarboxylase AHA_1126 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHA_1126 PF00205 Thiamine pyrophosphate enzyme, central domain AHA_1126 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHA_1127 PF01965 DJ-1/PfpI family AHA_1128 PF02558 Ketopantoate reductase PanE/ApbA AHA_1128 PF08546 Ketopantoate reductase PanE/ApbA C terminal AHA_1129 PF04461 Protein of unknown function (DUF520) AHA_1130 PF03502 Nucleoside-specific channel-forming protein, Tsx AHA_1131 PF07690 Major Facilitator Superfamily AHA_1132 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AHA_1134 PF05175 Methyltransferase small domain AHA_1135 PF01722 BolA-like protein AHA_1136 PF11973 NQRA C-terminal domain AHA_1136 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AHA_1137 PF03116 NQR2, RnfD, RnfE family AHA_1138 PF04205 FMN-binding domain AHA_1139 PF02508 Rnf-Nqr subunit, membrane protein AHA_1140 PF02508 Rnf-Nqr subunit, membrane protein AHA_1141 PF00970 Oxidoreductase FAD-binding domain AHA_1141 PF00111 2Fe-2S iron-sulfur cluster binding domain AHA_1141 PF00175 Oxidoreductase NAD-binding domain AHA_1142 PF02424 ApbE family AHA_1145 PF00817 impB/mucB/samB family AHA_1145 PF11798 IMS family HHH motif AHA_1145 PF11799 impB/mucB/samB family C-terminal domain AHA_1146 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1146 PF00672 HAMP domain AHA_1147 PF03466 LysR substrate binding domain AHA_1147 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1149 PF04241 Protein of unknown function (DUF423) AHA_1150 PF18125 RlmM ferredoxin-like domain AHA_1150 PF01728 FtsJ-like methyltransferase AHA_1152 PF18324 Hypothetical protein TT1725 AHA_1152 PF00180 Isocitrate/isopropylmalate dehydrogenase AHA_1153 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AHA_1153 PF01367 5'-3' exonuclease, C-terminal SAM fold AHA_1154 PF11892 Domain of unknown function (DUF3412) AHA_1154 PF03641 Possible lysine decarboxylase AHA_1154 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AHA_1155 PF00990 Diguanylate cyclase, GGDEF domain AHA_1157 PF14489 QueF-like protein AHA_1157 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AHA_1158 PF07348 Syd protein (SUKH-2) AHA_1159 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AHA_1163 PF04287 tRNA pseudouridine synthase C AHA_1164 PF00849 RNA pseudouridylate synthase AHA_1165 PF00258 Flavodoxin AHA_1166 PF02264 LamB porin AHA_1167 PF07148 Maltose operon periplasmic protein precursor (MalM) AHA_1168 PF02378 Phosphotransferase system, EIIC AHA_1168 PF00367 phosphotransferase system, EIIB AHA_1169 PF11944 Protein of unknown function (DUF3461) AHA_1170 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_1170 PF14602 Hexapeptide repeat of succinyl-transferase AHA_1170 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AHA_1171 PF01842 ACT domain AHA_1171 PF01966 HD domain AHA_1171 PF01909 Nucleotidyltransferase domain AHA_1171 PF08335 GlnD PII-uridylyltransferase AHA_1172 PF00557 Metallopeptidase family M24 AHA_1173 PF00318 Ribosomal protein S2 AHA_1174 PF00889 Elongation factor TS AHA_1175 PF00696 Amino acid kinase family AHA_1176 PF01765 Ribosome recycling factor AHA_1177 PF01255 Putative undecaprenyl diphosphate synthase AHA_1179 PF13288 DXP reductoisomerase C-terminal domain AHA_1179 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AHA_1179 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AHA_1180 PF02163 Peptidase family M50 AHA_1180 PF17820 PDZ domain AHA_1181 PF01103 Surface antigen AHA_1181 PF07244 Surface antigen variable number repeat AHA_1182 PF03938 Outer membrane protein (OmpH-like) AHA_1183 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_1183 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AHA_1184 PF07977 FabA-like domain AHA_1185 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_1185 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AHA_1186 PF02684 Lipid-A-disaccharide synthetase AHA_1187 PF01351 Ribonuclease HII AHA_1188 PF07733 Bacterial DNA polymerase III alpha NTPase domain AHA_1188 PF14579 Helix-hairpin-helix motif AHA_1188 PF02811 PHP domain AHA_1188 PF01336 OB-fold nucleic acid binding domain AHA_1188 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AHA_1189 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AHA_1190 PF18500 CadC C-terminal domain 1 AHA_1190 PF00486 Transcriptional regulatory protein, C terminal AHA_1191 PF13520 Amino acid permease AHA_1192 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AHA_1192 PF01276 Orn/Lys/Arg decarboxylase, major domain AHA_1192 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AHA_1193 PF08543 Phosphomethylpyrimidine kinase AHA_1195 PF03466 LysR substrate binding domain AHA_1195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1197 PF12706 Beta-lactamase superfamily domain AHA_1198 PF03466 LysR substrate binding domain AHA_1198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1199 PF12146 Serine aminopeptidase, S33 AHA_1200 PF12146 Serine aminopeptidase, S33 AHA_1201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1201 PF03466 LysR substrate binding domain AHA_1202 PF13520 Amino acid permease AHA_1203 PF13302 Acetyltransferase (GNAT) domain AHA_1204 PF00005 ABC transporter AHA_1204 PF16326 ABC transporter C-terminal domain AHA_1204 PF12848 ABC transporter AHA_1206 PF05649 Peptidase family M13 AHA_1206 PF01431 Peptidase family M13 AHA_1207 PF01171 PP-loop family AHA_1207 PF11734 TilS substrate C-terminal domain AHA_1207 PF09179 TilS substrate binding domain AHA_1208 PF00990 Diguanylate cyclase, GGDEF domain AHA_1209 PF00999 Sodium/hydrogen exchanger family AHA_1209 PF02080 TrkA-C domain AHA_1209 PF02254 TrkA-N domain AHA_1213 PF00196 Bacterial regulatory proteins, luxR family AHA_1213 PF00072 Response regulator receiver domain AHA_1215 PF00128 Alpha amylase, catalytic domain AHA_1218 PF00535 Glycosyl transferase family 2 AHA_1222 PF01471 Putative peptidoglycan binding domain AHA_1222 PF03734 L,D-transpeptidase catalytic domain AHA_1223 PF05951 Bacterial protein of unknown function (DUF882) AHA_1225 PF03458 UPF0126 domain AHA_1227 PF06470 SMC proteins Flexible Hinge Domain AHA_1227 PF02463 RecF/RecN/SMC N terminal domain AHA_1228 PF04354 ZipA, C-terminal FtsZ-binding domain AHA_1229 PF12826 Helix-hairpin-helix motif AHA_1229 PF01653 NAD-dependent DNA ligase adenylation domain AHA_1229 PF03120 NAD-dependent DNA ligase OB-fold domain AHA_1229 PF00533 BRCA1 C Terminus (BRCT) domain AHA_1229 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AHA_1231 PF03477 ATP cone domain AHA_1231 PF13597 Anaerobic ribonucleoside-triphosphate reductase AHA_1233 PF01679 Proteolipid membrane potential modulator AHA_1239 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_1239 PF00529 HlyD membrane-fusion protein of T1SS AHA_1240 PF01047 MarR family AHA_1242 PF03390 2-hydroxycarboxylate transporter family AHA_1243 PF03949 Malic enzyme, NAD binding domain AHA_1243 PF00390 Malic enzyme, N-terminal domain AHA_1244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1244 PF17203 Single cache domain 3 AHA_1244 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AHA_1244 PF00989 PAS fold AHA_1245 PF00072 Response regulator receiver domain AHA_1245 PF12431 Transcriptional regulator AHA_1246 PF00892 EamA-like transporter family AHA_1248 PF00171 Aldehyde dehydrogenase family AHA_1249 PF02954 Bacterial regulatory protein, Fis family AHA_1249 PF00158 Sigma-54 interaction domain AHA_1249 PF01590 GAF domain AHA_1250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHA_1250 PF02770 Acyl-CoA dehydrogenase, middle domain AHA_1250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHA_1251 PF02515 CoA-transferase family III AHA_1252 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_1253 PF00486 Transcriptional regulatory protein, C terminal AHA_1253 PF00072 Response regulator receiver domain AHA_1254 PF11808 Phosphate regulon sensor protein PhoR AHA_1254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1254 PF00989 PAS fold AHA_1254 PF00512 His Kinase A (phospho-acceptor) domain AHA_1255 PF12849 PBP superfamily domain AHA_1256 PF01435 Peptidase family M48 AHA_1258 PF00480 ROK family AHA_1259 PF03932 CutC family AHA_1261 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AHA_1261 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHA_1262 PF00005 ABC transporter AHA_1266 PF00293 NUDIX domain AHA_1268 PF08534 Redoxin AHA_1269 PF01699 Sodium/calcium exchanger protein AHA_1270 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AHA_1270 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AHA_1271 PF01235 Sodium:alanine symporter family AHA_1273 PF00860 Permease family AHA_1274 PF00990 Diguanylate cyclase, GGDEF domain AHA_1274 PF00072 Response regulator receiver domain AHA_1275 PF10692 Protein of unknown function (DUF2498) AHA_1276 PF01554 MatE AHA_1277 PF12833 Helix-turn-helix domain AHA_1278 PF00390 Malic enzyme, N-terminal domain AHA_1278 PF03949 Malic enzyme, NAD binding domain AHA_1279 PF01389 OmpA-like transmembrane domain AHA_1279 PF00691 OmpA family AHA_1280 PF00691 OmpA family AHA_1280 PF01389 OmpA-like transmembrane domain AHA_1281 PF01389 OmpA-like transmembrane domain AHA_1281 PF00691 OmpA family AHA_1284 PF00209 Sodium:neurotransmitter symporter family AHA_1285 PF01734 Patatin-like phospholipase AHA_1286 PF00990 Diguanylate cyclase, GGDEF domain AHA_1287 PF00529 HlyD membrane-fusion protein of T1SS AHA_1287 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_1288 PF00873 AcrB/AcrD/AcrF family AHA_1290 PF11842 Domain of unknown function (DUF3362) AHA_1290 PF04055 Radical SAM superfamily AHA_1290 PF08497 Radical SAM N-terminal AHA_1294 PF12833 Helix-turn-helix domain AHA_1295 PF05656 Protein of unknown function (DUF805) AHA_1300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHA_1301 PF02075 Crossover junction endodeoxyribonuclease RuvC AHA_1302 PF00230 Major intrinsic protein AHA_1303 PF01464 Transglycosylase SLT domain AHA_1303 PF10145 Phage-related minor tail protein AHA_1303 PF01551 Peptidase family M23 AHA_1304 PF00128 Alpha amylase, catalytic domain AHA_1305 PF01551 Peptidase family M23 AHA_1308 PF13091 PLD-like domain AHA_1308 PF13396 Phospholipase_D-nuclease N-terminal AHA_1310 PF00551 Formyl transferase AHA_1310 PF01842 ACT domain AHA_1311 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AHA_1312 PF00085 Thioredoxin AHA_1313 PF01648 4'-phosphopantetheinyl transferase superfamily AHA_1314 PF00877 NlpC/P60 family AHA_1315 PF05971 RNA methyltransferase AHA_1316 PF01575 MaoC like domain AHA_1318 PF17969 L,D-transpeptidase C-terminal domain AHA_1318 PF01476 LysM domain AHA_1318 PF03734 L,D-transpeptidase catalytic domain AHA_1320 PF00873 AcrB/AcrD/AcrF family AHA_1321 PF00529 HlyD membrane-fusion protein of T1SS AHA_1321 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_1322 PF00486 Transcriptional regulatory protein, C terminal AHA_1322 PF00072 Response regulator receiver domain AHA_1323 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1323 PF00512 His Kinase A (phospho-acceptor) domain AHA_1323 PF00672 HAMP domain AHA_1323 PF13426 PAS domain AHA_1324 PF00893 Small Multidrug Resistance protein AHA_1325 PF00893 Small Multidrug Resistance protein AHA_1327 PF06130 Phosphate propanoyltransferase AHA_1328 PF00936 BMC domain AHA_1329 PF13187 4Fe-4S dicluster domain AHA_1329 PF04055 Radical SAM superfamily AHA_1330 PF01228 Glycine radical AHA_1330 PF02901 Pyruvate formate lyase-like AHA_1331 PF00171 Aldehyde dehydrogenase family AHA_1331 PF00465 Iron-containing alcohol dehydrogenase AHA_1333 PF00465 Iron-containing alcohol dehydrogenase AHA_1333 PF00171 Aldehyde dehydrogenase family AHA_1334 PF00936 BMC domain AHA_1335 PF00936 BMC domain AHA_1336 PF00936 BMC domain AHA_1340 PF03466 LysR substrate binding domain AHA_1340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1341 PF02634 FdhD/NarQ family AHA_1342 PF00384 Molybdopterin oxidoreductase AHA_1345 PF00440 Bacterial regulatory proteins, tetR family AHA_1346 PF09317 Domain of unknown function (DUF1974) AHA_1346 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHA_1346 PF02770 Acyl-CoA dehydrogenase, middle domain AHA_1346 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHA_1347 PF00873 AcrB/AcrD/AcrF family AHA_1349 PF02887 Pyruvate kinase, alpha/beta domain AHA_1349 PF00224 Pyruvate kinase, barrel domain AHA_1350 PF01380 SIS domain AHA_1350 PF01418 Helix-turn-helix domain, rpiR family AHA_1351 PF02685 Glucokinase AHA_1352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1353 PF00072 Response regulator receiver domain AHA_1353 PF00486 Transcriptional regulatory protein, C terminal AHA_1354 PF03412 Peptidase C39 family AHA_1354 PF00005 ABC transporter AHA_1354 PF00664 ABC transporter transmembrane region AHA_1356 PF00005 ABC transporter AHA_1356 PF03412 Peptidase C39 family AHA_1356 PF00664 ABC transporter transmembrane region AHA_1358 PF02794 RTX toxin acyltransferase family AHA_1359 PF16671 Actin cross-linking domain AHA_1359 PF12146 Serine aminopeptidase, S33 AHA_1359 PF11647 Membrane Localization Domain AHA_1359 PF11713 Peptidase C80 family AHA_1359 PF07634 RtxA repeat AHA_1361 PF04055 Radical SAM superfamily AHA_1361 PF00919 Uncharacterized protein family UPF0004 AHA_1361 PF18693 TRAM domain AHA_1362 PF00072 Response regulator receiver domain AHA_1364 PF02049 Flagellar hook-basal body complex protein FliE AHA_1365 PF01514 Secretory protein of YscJ/FliF family AHA_1365 PF08345 Flagellar M-ring protein C-terminal AHA_1366 PF01706 FliG C-terminal domain AHA_1366 PF14841 FliG middle domain AHA_1366 PF14842 FliG N-terminal domain AHA_1368 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHA_1368 PF18269 T3SS EscN ATPase C-terminal domain AHA_1372 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AHA_1372 PF02154 Flagellar motor switch protein FliM AHA_1373 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AHA_1374 PF04347 Flagellar biosynthesis protein, FliO AHA_1375 PF00813 FliP family AHA_1376 PF01313 Bacterial export proteins, family 3 AHA_1377 PF01311 Bacterial export proteins, family 1 AHA_1378 PF01312 FlhB HrpN YscU SpaS Family AHA_1379 PF00771 FHIPEP family AHA_1380 PF00448 SRP54-type protein, GTPase domain AHA_1381 PF10609 NUBPL iron-transfer P-loop NTPase AHA_1382 PF04545 Sigma-70, region 4 AHA_1382 PF04539 Sigma-70 region 3 AHA_1382 PF04542 Sigma-70 region 2 AHA_1383 PF00072 Response regulator receiver domain AHA_1384 PF04344 Chemotaxis phosphatase, CheZ AHA_1385 PF02895 Signal transducing histidine kinase, homodimeric domain AHA_1385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1385 PF00072 Response regulator receiver domain AHA_1385 PF01627 Hpt domain AHA_1385 PF01584 CheW-like domain AHA_1386 PF00072 Response regulator receiver domain AHA_1386 PF01339 CheB methylesterase AHA_1387 PF01618 MotA/TolQ/ExbB proton channel family AHA_1388 PF00691 OmpA family AHA_1388 PF13677 Membrane MotB of proton-channel complex MotA/MotB AHA_1389 PF13614 AAA domain AHA_1391 PF01584 CheW-like domain AHA_1393 PF00005 ABC transporter AHA_1394 PF03379 CcmB protein AHA_1395 PF01578 Cytochrome C assembly protein AHA_1396 PF04995 Heme exporter protein D (CcmD) AHA_1397 PF03100 CcmE AHA_1398 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AHA_1398 PF01578 Cytochrome C assembly protein AHA_1399 PF08534 Redoxin AHA_1400 PF03918 Cytochrome C biogenesis protein AHA_1401 PF03918 Cytochrome C biogenesis protein AHA_1402 PF04333 MlaA lipoprotein AHA_1403 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AHA_1403 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AHA_1404 PF00462 Glutaredoxin AHA_1405 PF01029 NusB family AHA_1405 PF01189 16S rRNA methyltransferase RsmB/F AHA_1408 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AHA_1408 PF01243 Pyridoxamine 5'-phosphate oxidase AHA_1409 PF02798 Glutathione S-transferase, N-terminal domain AHA_1411 PF13508 Acetyltransferase (GNAT) domain AHA_1412 PF08007 Cupin superfamily protein AHA_1413 PF00206 Lyase AHA_1413 PF08328 Adenylosuccinate lyase C-terminal AHA_1414 PF04356 Protein of unknown function (DUF489) AHA_1416 PF00293 NUDIX domain AHA_1417 PF00849 RNA pseudouridylate synthase AHA_1419 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHA_1420 PF07690 Major Facilitator Superfamily AHA_1421 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHA_1421 PF02378 Phosphotransferase system, EIIC AHA_1421 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHA_1422 PF00583 Acetyltransferase (GNAT) family AHA_1424 PF13411 MerR HTH family regulatory protein AHA_1425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AHA_1425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_1426 PF00356 Bacterial regulatory proteins, lacI family AHA_1426 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHA_1427 PF00367 phosphotransferase system, EIIB AHA_1427 PF02378 Phosphotransferase system, EIIC AHA_1428 PF00155 Aminotransferase class I and II AHA_1434 PF01238 Phosphomannose isomerase type I AHA_1435 PF12833 Helix-turn-helix domain AHA_1436 PF00180 Isocitrate/isopropylmalate dehydrogenase AHA_1438 PF00291 Pyridoxal-phosphate dependent enzyme AHA_1439 PF03466 LysR substrate binding domain AHA_1439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1443 PF01668 SmpB protein AHA_1444 PF03364 Polyketide cyclase / dehydrase and lipid transport AHA_1445 PF03658 RnfH family Ubiquitin AHA_1446 PF13460 NAD(P)H-binding AHA_1447 PF04355 SmpA / OmlA family AHA_1453 PF00263 Bacterial type II and III secretion system protein AHA_1453 PF13629 Pilus formation protein N terminal region AHA_1453 PF04972 BON domain AHA_1456 PF00437 Type II/IV secretion system protein AHA_1463 PF00465 Iron-containing alcohol dehydrogenase AHA_1464 PF01048 Phosphorylase superfamily AHA_1465 PF00849 RNA pseudouridylate synthase AHA_1466 PF01156 Inosine-uridine preferring nucleoside hydrolase AHA_1469 PF07509 Protein of unknown function (DUF1523) AHA_1470 PF00672 HAMP domain AHA_1470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1471 PF01810 LysE type translocator AHA_1473 PF03471 Transporter associated domain AHA_1473 PF00999 Sodium/hydrogen exchanger family AHA_1473 PF02080 TrkA-C domain AHA_1475 PF03471 Transporter associated domain AHA_1475 PF00999 Sodium/hydrogen exchanger family AHA_1475 PF02080 TrkA-C domain AHA_1477 PF02557 D-alanyl-D-alanine carboxypeptidase AHA_1478 PF01546 Peptidase family M20/M25/M40 AHA_1478 PF07687 Peptidase dimerisation domain AHA_1479 PF03960 ArsC family AHA_1480 PF03466 LysR substrate binding domain AHA_1480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1482 PF03606 C4-dicarboxylate anaerobic carrier AHA_1483 PF07687 Peptidase dimerisation domain AHA_1483 PF01546 Peptidase family M20/M25/M40 AHA_1485 PF03605 Anaerobic c4-dicarboxylate membrane transporter AHA_1486 PF00152 tRNA synthetases class II (D, K and N) AHA_1486 PF01336 OB-fold nucleic acid binding domain AHA_1488 PF00202 Aminotransferase class-III AHA_1489 PF04055 Radical SAM superfamily AHA_1489 PF06968 Biotin and Thiamin Synthesis associated domain AHA_1490 PF00155 Aminotransferase class I and II AHA_1491 PF08241 Methyltransferase domain AHA_1491 PF12697 Alpha/beta hydrolase family AHA_1493 PF01435 Peptidase family M48 AHA_1494 PF13426 PAS domain AHA_1494 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1494 PF08447 PAS fold AHA_1495 PF00111 2Fe-2S iron-sulfur cluster binding domain AHA_1495 PF03476 MOSC N-terminal beta barrel domain AHA_1495 PF00111 2Fe-2S iron-sulfur cluster binding domain AHA_1495 PF03473 MOSC domain AHA_1495 PF03476 MOSC N-terminal beta barrel domain AHA_1495 PF03473 MOSC domain AHA_1496 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AHA_1496 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_1496 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AHA_1497 PF10371 Domain of unknown function AHA_1497 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AHA_1497 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AHA_1497 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHA_1497 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AHA_1500 PF01554 MatE AHA_1504 PF00291 Pyridoxal-phosphate dependent enzyme AHA_1506 PF00465 Iron-containing alcohol dehydrogenase AHA_1508 PF00440 Bacterial regulatory proteins, tetR family AHA_1508 PF08359 YsiA-like protein, C-terminal region AHA_1509 PF00171 Aldehyde dehydrogenase family AHA_1511 PF00877 NlpC/P60 family AHA_1512 PF12563 Hemolytic toxin N terminal AHA_1512 PF07968 Leukocidin/Hemolysin toxin family AHA_1513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1513 PF03466 LysR substrate binding domain AHA_1514 PF10417 C-terminal domain of 1-Cys peroxiredoxin AHA_1514 PF00578 AhpC/TSA family AHA_1518 PF08003 Protein of unknown function (DUF1698) AHA_1519 PF13649 Methyltransferase domain AHA_1520 PF01904 Protein of unknown function DUF72 AHA_1521 PF01336 OB-fold nucleic acid binding domain AHA_1521 PF02938 GAD domain AHA_1521 PF00152 tRNA synthetases class II (D, K and N) AHA_1522 PF01709 Transcriptional regulator AHA_1523 PF00884 Sulfatase AHA_1523 PF08019 Phosphoethanolamine transferase EptA/EptB AHA_1524 PF00480 ROK family AHA_1524 PF01047 MarR family AHA_1525 PF01979 Amidohydrolase family AHA_1526 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AHA_1527 PF02378 Phosphotransferase system, EIIC AHA_1527 PF00367 phosphotransferase system, EIIB AHA_1527 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AHA_1528 PF03173 Putative carbohydrate binding domain AHA_1528 PF00728 Glycosyl hydrolase family 20, catalytic domain AHA_1528 PF02838 Glycosyl hydrolase family 20, domain 2 AHA_1528 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AHA_1529 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AHA_1529 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHA_1530 PF01475 Ferric uptake regulator family AHA_1532 PF00258 Flavodoxin AHA_1533 PF01402 Ribbon-helix-helix protein, copG family AHA_1535 PF12697 Alpha/beta hydrolase family AHA_1536 PF17206 SeqA protein N-terminal domain AHA_1536 PF03925 SeqA protein C-terminal domain AHA_1537 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AHA_1537 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AHA_1537 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AHA_1537 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AHA_1539 PF01047 MarR family AHA_1542 PF13406 Transglycosylase SLT domain AHA_1543 PF01066 CDP-alcohol phosphatidyltransferase AHA_1544 PF00005 ABC transporter AHA_1546 PF13416 Bacterial extracellular solute-binding protein AHA_1547 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_1547 PF00403 Heavy-metal-associated domain AHA_1547 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHA_1548 PF02627 Carboxymuconolactone decarboxylase family AHA_1550 PF01625 Peptide methionine sulfoxide reductase AHA_1553 PF17243 POTRA domain TamA domain 1 AHA_1553 PF07244 Surface antigen variable number repeat AHA_1553 PF01103 Surface antigen AHA_1554 PF04357 TamB, inner membrane protein subunit of TAM complex AHA_1558 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AHA_1559 PF03707 Bacterial signalling protein N terminal repeat AHA_1559 PF00990 Diguanylate cyclase, GGDEF domain AHA_1559 PF00563 EAL domain AHA_1560 PF01464 Transglycosylase SLT domain AHA_1560 PF14718 Soluble lytic murein transglycosylase L domain AHA_1561 PF00356 Bacterial regulatory proteins, lacI family AHA_1563 PF03061 Thioesterase superfamily AHA_1565 PF03372 Endonuclease/Exonuclease/phosphatase family AHA_1566 PF01464 Transglycosylase SLT domain AHA_1566 PF01476 LysM domain AHA_1567 PF16123 Hydroxyacylglutathione hydrolase C-terminus AHA_1567 PF00753 Metallo-beta-lactamase superfamily AHA_1568 PF00075 RNase H AHA_1569 PF08241 Methyltransferase domain AHA_1570 PF00929 Exonuclease AHA_1572 PF11849 Domain of unknown function (DUF3369) AHA_1573 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHA_1573 PF02770 Acyl-CoA dehydrogenase, middle domain AHA_1573 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHA_1573 PF09317 Domain of unknown function (DUF1974) AHA_1574 PF13580 SIS domain AHA_1575 PF13230 Glutamine amidotransferases class-II AHA_1577 PF01933 Uncharacterised protein family UPF0052 AHA_1579 PF00512 His Kinase A (phospho-acceptor) domain AHA_1579 PF09456 RcsC Alpha-Beta-Loop (ABL) AHA_1579 PF00072 Response regulator receiver domain AHA_1579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1581 PF00072 Response regulator receiver domain AHA_1581 PF00196 Bacterial regulatory proteins, luxR family AHA_1582 PF07730 Histidine kinase AHA_1582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_1582 PF00672 HAMP domain AHA_1582 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AHA_1583 PF06463 Molybdenum Cofactor Synthesis C AHA_1583 PF04055 Radical SAM superfamily AHA_1584 PF00037 4Fe-4S binding domain AHA_1584 PF13187 4Fe-4S dicluster domain AHA_1584 PF12800 4Fe-4S binding domain AHA_1586 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHA_1586 PF00384 Molybdopterin oxidoreductase AHA_1586 PF01568 Molydopterin dinucleotide binding domain AHA_1586 PF10518 TAT (twin-arginine translocation) pathway signal sequence AHA_1587 PF12800 4Fe-4S binding domain AHA_1587 PF12838 4Fe-4S dicluster domain AHA_1588 PF13237 4Fe-4S dicluster domain AHA_1588 PF12801 4Fe-4S binding domain AHA_1589 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AHA_1590 PF03264 NapC/NirT cytochrome c family, N-terminal region AHA_1591 PF00994 Probable molybdopterin binding domain AHA_1592 PF01967 MoaC family AHA_1593 PF02597 ThiS family AHA_1594 PF02391 MoaE protein AHA_1596 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1597 PF03459 TOBE domain AHA_1597 PF00005 ABC transporter AHA_1598 PF00561 alpha/beta hydrolase fold AHA_1599 PF00899 ThiF family AHA_1600 PF00994 Probable molybdopterin binding domain AHA_1600 PF03453 MoeA N-terminal region (domain I and II) AHA_1600 PF03454 MoeA C-terminal region (domain IV) AHA_1601 PF01227 GTP cyclohydrolase I AHA_1602 PF00672 HAMP domain AHA_1602 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1602 PF17200 Single Cache domain 2 AHA_1603 PF01268 Formate--tetrahydrofolate ligase AHA_1604 PF01268 Formate--tetrahydrofolate ligase AHA_1606 PF03466 LysR substrate binding domain AHA_1606 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1607 PF04264 YceI-like domain AHA_1612 PF07687 Peptidase dimerisation domain AHA_1612 PF01546 Peptidase family M20/M25/M40 AHA_1613 PF17944 Arginine decarboxylase C-terminal helical extension AHA_1613 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AHA_1613 PF17810 Arginine decarboxylase helical bundle domain AHA_1616 PF00672 HAMP domain AHA_1616 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1618 PF01042 Endoribonuclease L-PSP AHA_1619 PF03313 Serine dehydratase alpha chain AHA_1620 PF08348 YheO-like PAS domain AHA_1620 PF13309 HTH domain AHA_1621 PF00300 Histidine phosphatase superfamily (branch 1) AHA_1622 PF01844 HNH endonuclease AHA_1624 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_1626 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AHA_1626 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AHA_1628 PF00849 RNA pseudouridylate synthase AHA_1628 PF01479 S4 domain AHA_1629 PF07690 Major Facilitator Superfamily AHA_1631 PF03466 LysR substrate binding domain AHA_1631 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1632 PF07690 Major Facilitator Superfamily AHA_1634 PF10689 Protein of unknown function (DUF2496) AHA_1637 PF04391 Protein of unknown function (DUF533) AHA_1639 PF00155 Aminotransferase class I and II AHA_1639 PF00392 Bacterial regulatory proteins, gntR family AHA_1640 PF01654 Cytochrome bd terminal oxidase subunit I AHA_1641 PF02322 Cytochrome bd terminal oxidase subunit II AHA_1643 PF07690 Major Facilitator Superfamily AHA_1644 PF00248 Aldo/keto reductase family AHA_1647 PF03466 LysR substrate binding domain AHA_1647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1648 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AHA_1648 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AHA_1649 PF00230 Major intrinsic protein AHA_1650 PF07690 Major Facilitator Superfamily AHA_1651 PF00455 DeoR C terminal sensor domain AHA_1651 PF08220 DeoR-like helix-turn-helix domain AHA_1652 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AHA_1652 PF01266 FAD dependent oxidoreductase AHA_1653 PF03009 Glycerophosphoryl diester phosphodiesterase family AHA_1654 PF00793 DAHP synthetase I family AHA_1655 PF01817 Chorismate mutase type II AHA_1655 PF02153 Prephenate dehydrogenase AHA_1656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1656 PF03466 LysR substrate binding domain AHA_1657 PF04219 Protein of unknown function, DUF AHA_1658 PF03974 Ecotin AHA_1662 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AHA_1662 PF00326 Prolyl oligopeptidase family AHA_1663 PF07715 TonB-dependent Receptor Plug Domain AHA_1663 PF00593 TonB dependent receptor AHA_1664 PF11893 Domain of unknown function (DUF3413) AHA_1664 PF00884 Sulfatase AHA_1665 PF07208 Protein of unknown function (DUF1414) AHA_1666 PF04245 37-kD nucleoid-associated bacterial protein AHA_1667 PF01547 Bacterial extracellular solute-binding protein AHA_1668 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1668 PF14785 Maltose transport system permease protein MalF P2 domain AHA_1669 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1670 PF00005 ABC transporter AHA_1670 PF08402 TOBE domain AHA_1671 PF03976 Polyphosphate kinase 2 (PPK2) AHA_1672 PF00561 alpha/beta hydrolase fold AHA_1674 PF01594 AI-2E family transporter AHA_1675 PF01206 Sulfurtransferase TusA AHA_1676 PF13181 Tetratricopeptide repeat AHA_1676 PF01435 Peptidase family M48 AHA_1677 PF00578 AhpC/TSA family AHA_1678 PF03960 ArsC family AHA_1681 PF04336 Acyl carrier protein phosphodiesterase AHA_1682 PF01979 Amidohydrolase family AHA_1683 PF03956 Lysine exporter LysO AHA_1684 PF00005 ABC transporter AHA_1685 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_1686 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1687 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1689 PF04055 Radical SAM superfamily AHA_1690 PF00563 EAL domain AHA_1690 PF03707 Bacterial signalling protein N terminal repeat AHA_1690 PF00990 Diguanylate cyclase, GGDEF domain AHA_1691 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_1691 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHA_1692 PF07703 Alpha-2-macroglobulin bait region domain AHA_1692 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AHA_1692 PF00207 Alpha-2-macroglobulin family AHA_1692 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AHA_1692 PF01835 MG2 domain AHA_1692 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AHA_1692 PF07678 A-macroglobulin TED domain AHA_1692 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AHA_1692 PF17962 Bacterial macroglobulin domain 6 AHA_1693 PF00912 Transglycosylase AHA_1693 PF06832 Penicillin-Binding Protein C-terminus Family AHA_1693 PF00905 Penicillin binding protein transpeptidase domain AHA_1695 PF02568 Thiamine biosynthesis protein (ThiI) AHA_1695 PF02926 THUMP domain AHA_1697 PF03458 UPF0126 domain AHA_1698 PF00700 Bacterial flagellin C-terminal helical region AHA_1698 PF00669 Bacterial flagellin N-terminal helical region AHA_1698 PF07196 Flagellin hook IN motif AHA_1699 PF07196 Flagellin hook IN motif AHA_1699 PF00700 Bacterial flagellin C-terminal helical region AHA_1699 PF00669 Bacterial flagellin N-terminal helical region AHA_1701 PF07196 Flagellin hook IN motif AHA_1701 PF07195 Flagellar hook-associated protein 2 C-terminus AHA_1701 PF02465 Flagellar hook-associated protein 2 N-terminus AHA_1702 PF02561 Flagellar protein FliS AHA_1704 PF01497 Periplasmic binding protein AHA_1706 PF01048 Phosphorylase superfamily AHA_1708 PF02535 ZIP Zinc transporter AHA_1709 PF12729 Four helix bundle sensory module for signal transduction AHA_1709 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1709 PF00672 HAMP domain AHA_1710 PF00459 Inositol monophosphatase family AHA_1712 PF02798 Glutathione S-transferase, N-terminal domain AHA_1712 PF00043 Glutathione S-transferase, C-terminal domain AHA_1713 PF07690 Major Facilitator Superfamily AHA_1714 PF05164 Cell division protein ZapA AHA_1715 PF03695 Uncharacterised protein family (UPF0149) AHA_1716 PF01494 FAD binding domain AHA_1717 PF01494 FAD binding domain AHA_1718 PF08669 Glycine cleavage T-protein C-terminal barrel domain AHA_1718 PF01571 Aminomethyltransferase folate-binding domain AHA_1719 PF01597 Glycine cleavage H-protein AHA_1720 PF02347 Glycine cleavage system P-protein AHA_1724 PF06953 Arsenical resistance operon trans-acting repressor ArsD AHA_1725 PF02374 Anion-transporting ATPase AHA_1726 PF01758 Sodium Bile acid symporter family AHA_1727 PF03960 ArsC family AHA_1728 PF08241 Methyltransferase domain AHA_1730 PF07690 Major Facilitator Superfamily AHA_1731 PF13192 Thioredoxin domain AHA_1731 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_1732 PF00578 AhpC/TSA family AHA_1732 PF10417 C-terminal domain of 1-Cys peroxiredoxin AHA_1733 PF00571 CBS domain AHA_1734 PF02547 Queuosine biosynthesis protein AHA_1735 PF01702 Queuine tRNA-ribosyltransferase AHA_1736 PF02699 Preprotein translocase subunit AHA_1737 PF02355 Protein export membrane protein AHA_1737 PF07549 SecD/SecF GG Motif AHA_1737 PF13721 SecD export protein N-terminal TM region AHA_1738 PF07549 SecD/SecF GG Motif AHA_1738 PF02355 Protein export membrane protein AHA_1740 PF13181 Tetratricopeptide repeat AHA_1740 PF07719 Tetratricopeptide repeat AHA_1741 PF01136 Peptidase family U32 AHA_1742 PF01136 Peptidase family U32 AHA_1744 PF02036 SCP-2 sterol transfer family AHA_1745 PF00588 SpoU rRNA Methylase family AHA_1746 PF02082 Transcriptional regulator AHA_1747 PF00266 Aminotransferase class-V AHA_1748 PF01592 NifU-like N terminal domain AHA_1749 PF01521 Iron-sulphur cluster biosynthesis AHA_1750 PF07743 HSCB C-terminal oligomerisation domain AHA_1751 PF00012 Hsp70 protein AHA_1752 PF00111 2Fe-2S iron-sulfur cluster binding domain AHA_1753 PF00883 Cytosol aminopeptidase family, catalytic domain AHA_1753 PF12404 Peptidase AHA_1754 PF12404 Peptidase AHA_1754 PF00883 Cytosol aminopeptidase family, catalytic domain AHA_1755 PF00334 Nucleoside diphosphate kinase AHA_1756 PF04055 Radical SAM superfamily AHA_1758 PF13464 Domain of unknown function (DUF4115) AHA_1759 PF04551 GcpE protein AHA_1760 PF13393 Histidyl-tRNA synthetase AHA_1760 PF03129 Anticodon binding domain AHA_1761 PF09976 Tetratricopeptide repeat-like domain AHA_1762 PF13360 PQQ-like domain AHA_1763 PF01926 50S ribosome-binding GTPase AHA_1763 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AHA_1764 PF07191 zinc-ribbons AHA_1765 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_1765 PF01464 Transglycosylase SLT domain AHA_1766 PF02769 AIR synthase related protein, C-terminal domain AHA_1766 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AHA_1766 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AHA_1767 PF01966 HD domain AHA_1768 PF00072 Response regulator receiver domain AHA_1770 PF00361 Proton-conducting membrane transporter AHA_1771 PF00361 Proton-conducting membrane transporter AHA_1772 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AHA_1772 PF00361 Proton-conducting membrane transporter AHA_1773 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AHA_1774 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AHA_1775 PF12838 4Fe-4S dicluster domain AHA_1776 PF00146 NADH dehydrogenase AHA_1777 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AHA_1777 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHA_1777 PF00384 Molybdopterin oxidoreductase AHA_1778 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AHA_1778 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AHA_1780 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AHA_1780 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AHA_1781 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AHA_1782 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AHA_1783 PF00691 OmpA family AHA_1783 PF13677 Membrane MotB of proton-channel complex MotA/MotB AHA_1784 PF01618 MotA/TolQ/ExbB proton channel family AHA_1787 PF04536 TPM domain AHA_1789 PF03411 Penicillin-insensitive murein endopeptidase AHA_1791 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AHA_1792 PF00248 Aldo/keto reductase family AHA_1795 PF01212 Beta-eliminating lyase AHA_1797 PF00072 Response regulator receiver domain AHA_1798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1798 PF03466 LysR substrate binding domain AHA_1800 PF00563 EAL domain AHA_1800 PF00990 Diguanylate cyclase, GGDEF domain AHA_1800 PF03707 Bacterial signalling protein N terminal repeat AHA_1800 PF13188 PAS domain AHA_1801 PF00881 Nitroreductase family AHA_1804 PF07690 Major Facilitator Superfamily AHA_1805 PF03466 LysR substrate binding domain AHA_1805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1806 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1806 PF03466 LysR substrate binding domain AHA_1807 PF00925 GTP cyclohydrolase II AHA_1808 PF02224 Cytidylate kinase AHA_1809 PF00575 S1 RNA binding domain AHA_1810 PF00216 Bacterial DNA-binding protein AHA_1812 PF18073 Rubredoxin metal binding domain AHA_1813 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AHA_1816 PF06508 Queuosine biosynthesis protein QueC AHA_1817 PF04055 Radical SAM superfamily AHA_1818 PF12843 Putative quorum-sensing-regulated virulence factor AHA_1819 PF01923 Cobalamin adenosyltransferase AHA_1820 PF00816 H-NS histone family AHA_1821 PF03553 Na+/H+ antiporter family AHA_1822 PF00265 Thymidine kinase AHA_1824 PF10722 Putative bacterial sensory transduction regulator AHA_1826 PF05638 Type VI secretion system effector, Hcp AHA_1827 PF04717 Type VI secretion system, phage-baseplate injector AHA_1833 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AHA_1835 PF05947 Type VI secretion system, TssF AHA_1839 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AHA_1841 PF17871 AAA lid domain AHA_1841 PF07724 AAA domain (Cdc48 subfamily) AHA_1841 PF00004 ATPase family associated with various cellular activities (AAA) AHA_1841 PF10431 C-terminal, D2-small domain, of ClpB protein AHA_1842 PF02954 Bacterial regulatory protein, Fis family AHA_1842 PF00158 Sigma-54 interaction domain AHA_1845 PF06744 Type VI secretion protein IcmF C-terminal AHA_1845 PF06761 Intracellular multiplication and human macrophage-killing AHA_1845 PF14331 ImcF-related N-terminal domain AHA_1848 PF04717 Type VI secretion system, phage-baseplate injector AHA_1854 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AHA_1854 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AHA_1855 PF00313 'Cold-shock' DNA-binding domain AHA_1856 PF02617 ATP-dependent Clp protease adaptor protein ClpS AHA_1857 PF00004 ATPase family associated with various cellular activities (AAA) AHA_1857 PF10431 C-terminal, D2-small domain, of ClpB protein AHA_1857 PF02861 Clp amino terminal domain, pathogenicity island component AHA_1857 PF17871 AAA lid domain AHA_1857 PF07724 AAA domain (Cdc48 subfamily) AHA_1858 PF01176 Translation initiation factor 1A / IF-1 AHA_1859 PF04377 Arginine-tRNA-protein transferase, C terminus AHA_1859 PF04376 Arginine-tRNA-protein transferase, N terminus AHA_1860 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AHA_1861 PF05433 Glycine zipper 2TM domain AHA_1862 PF17158 Membrane-associated sensor, integral membrane domain AHA_1862 PF00990 Diguanylate cyclase, GGDEF domain AHA_1863 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_1864 PF01037 Lrp/AsnC ligand binding domain AHA_1865 PF01580 FtsK/SpoIIIE family AHA_1865 PF09397 Ftsk gamma domain AHA_1865 PF17854 FtsK alpha domain AHA_1865 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AHA_1866 PF03548 Outer membrane lipoprotein carrier protein LolA AHA_1867 PF12002 MgsA AAA+ ATPase C terminal AHA_1867 PF16193 AAA C-terminal domain AHA_1867 PF00004 ATPase family associated with various cellular activities (AAA) AHA_1868 PF02403 Seryl-tRNA synthetase N-terminal domain AHA_1868 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AHA_1869 PF02674 Colicin V production protein AHA_1870 PF00156 Phosphoribosyl transferase domain AHA_1871 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AHA_1872 PF00005 ABC transporter AHA_1873 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_1873 PF00005 ABC transporter AHA_1874 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1874 PF12911 N-terminal TM domain of oligopeptide transport permease C AHA_1875 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1876 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_1877 PF02954 Bacterial regulatory protein, Fis family AHA_1877 PF00158 Sigma-54 interaction domain AHA_1878 PF04012 PspA/IM30 family AHA_1879 PF06667 Phage shock protein B AHA_1881 PF04317 YcjX-like family, DUF463 AHA_1882 PF05128 Domain of unknown function (DUF697) AHA_1883 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AHA_1884 PF01329 Pterin 4 alpha carbinolamine dehydratase AHA_1885 PF01329 Pterin 4 alpha carbinolamine dehydratase AHA_1886 PF00158 Sigma-54 interaction domain AHA_1886 PF18024 Helix-turn-helix domain AHA_1887 PF13689 YfiR/HmsC-like AHA_1888 PF17152 Periplasmic sensor domain AHA_1888 PF00990 Diguanylate cyclase, GGDEF domain AHA_1889 PF00691 OmpA family AHA_1890 PF03741 Integral membrane protein TerC family AHA_1892 PF08891 YfcL protein AHA_1893 PF00501 AMP-binding enzyme AHA_1894 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AHA_1894 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AHA_1895 PF04172 LrgB-like family AHA_1896 PF03788 LrgA family AHA_1899 PF08411 Exonuclease C-terminal AHA_1899 PF00929 Exonuclease AHA_1900 PF11762 L-arabinose isomerase C-terminal domain AHA_1900 PF02610 L-arabinose isomerase AHA_1901 PF00596 Class II Aldolase and Adducin N-terminal domain AHA_1902 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AHA_1903 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHA_1904 PF00005 ABC transporter AHA_1905 PF02653 Branched-chain amino acid transport system / permease component AHA_1906 PF02311 AraC-like ligand binding domain AHA_1906 PF12833 Helix-turn-helix domain AHA_1908 PF03466 LysR substrate binding domain AHA_1908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1909 PF02678 Pirin AHA_1909 PF05726 Pirin C-terminal cupin domain AHA_1910 PF00444 Ribosomal protein L36 AHA_1911 PF01197 Ribosomal protein L31 AHA_1914 PF01863 Protein of unknown function DUF45 AHA_1917 PF03606 C4-dicarboxylate anaerobic carrier AHA_1919 PF01266 FAD dependent oxidoreductase AHA_1919 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AHA_1920 PF02801 Beta-ketoacyl synthase, C-terminal domain AHA_1920 PF00109 Beta-ketoacyl synthase, N-terminal domain AHA_1922 PF00285 Citrate synthase, C-terminal domain AHA_1923 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AHA_1924 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AHA_1925 PF00890 FAD binding domain AHA_1925 PF02910 Fumarate reductase flavoprotein C-term AHA_1926 PF13085 2Fe-2S iron-sulfur cluster binding domain AHA_1927 PF16870 2-oxoglutarate dehydrogenase C-terminal AHA_1927 PF00676 Dehydrogenase E1 component AHA_1927 PF02779 Transketolase, pyrimidine binding domain AHA_1927 PF16078 2-oxoglutarate dehydrogenase N-terminus AHA_1928 PF00364 Biotin-requiring enzyme AHA_1928 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AHA_1928 PF02817 e3 binding domain AHA_1929 PF08442 ATP-grasp domain AHA_1929 PF00549 CoA-ligase AHA_1930 PF02629 CoA binding domain AHA_1930 PF00549 CoA-ligase AHA_1932 PF03692 Putative zinc- or iron-chelating domain AHA_1933 PF01266 FAD dependent oxidoreductase AHA_1934 PF00528 Binding-protein-dependent transport system inner membrane component AHA_1935 PF00005 ABC transporter AHA_1937 PF07702 UTRA domain AHA_1937 PF00392 Bacterial regulatory proteins, gntR family AHA_1938 PF00266 Aminotransferase class-V AHA_1939 PF00202 Aminotransferase class-III AHA_1941 PF01228 Glycine radical AHA_1941 PF02901 Pyruvate formate lyase-like AHA_1942 PF01226 Formate/nitrite transporter AHA_1943 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AHA_1943 PF18381 YcaO cyclodehydratase C-terminal domain AHA_1944 PF00893 Small Multidrug Resistance protein AHA_1945 PF02774 Semialdehyde dehydrogenase, dimerisation domain AHA_1945 PF01118 Semialdehyde dehydrogenase, NAD binding domain AHA_1946 PF00675 Insulinase (Peptidase family M16) AHA_1946 PF05193 Peptidase M16 inactive domain AHA_1947 PF01053 Cys/Met metabolism PLP-dependent enzyme AHA_1949 PF13460 NAD(P)H-binding AHA_1950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1950 PF03466 LysR substrate binding domain AHA_1951 PF00106 short chain dehydrogenase AHA_1952 PF12833 Helix-turn-helix domain AHA_1953 PF07715 TonB-dependent Receptor Plug Domain AHA_1953 PF00593 TonB dependent receptor AHA_1955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_1955 PF03466 LysR substrate binding domain AHA_1956 PF08267 Cobalamin-independent synthase, N-terminal domain AHA_1956 PF01717 Cobalamin-independent synthase, Catalytic domain AHA_1958 PF00571 CBS domain AHA_1958 PF00478 IMP dehydrogenase / GMP reductase domain AHA_1959 PF07969 Amidohydrolase family AHA_1961 PF01266 FAD dependent oxidoreductase AHA_1962 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AHA_1963 PF01212 Beta-eliminating lyase AHA_1964 PF01497 Periplasmic binding protein AHA_1965 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AHA_1965 PF01648 4'-phosphopantetheinyl transferase superfamily AHA_1966 PF00005 ABC transporter AHA_1967 PF01032 FecCD transport family AHA_1968 PF01032 FecCD transport family AHA_1969 PF00593 TonB dependent receptor AHA_1969 PF07715 TonB-dependent Receptor Plug Domain AHA_1972 PF11143 Protein of unknown function (DUF2919) AHA_1973 PF01544 CorA-like Mg2+ transporter protein AHA_1976 PF01012 Electron transfer flavoprotein domain AHA_1977 PF01012 Electron transfer flavoprotein domain AHA_1977 PF00766 Electron transfer flavoprotein FAD-binding domain AHA_1978 PF00266 Aminotransferase class-V AHA_1979 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AHA_1980 PF00793 DAHP synthetase I family AHA_1981 PF00672 HAMP domain AHA_1981 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_1982 PF04055 Radical SAM superfamily AHA_1983 PF13742 OB-fold nucleic acid binding domain AHA_1983 PF02601 Exonuclease VII, large subunit AHA_1984 PF00892 EamA-like transporter family AHA_1985 PF02472 Biopolymer transport protein ExbD/TolR AHA_1986 PF01618 MotA/TolQ/ExbB proton channel family AHA_1988 PF02705 K+ potassium transporter AHA_1989 PF00571 CBS domain AHA_1989 PF00478 IMP dehydrogenase / GMP reductase domain AHA_1990 PF00117 Glutamine amidotransferase class-I AHA_1990 PF00958 GMP synthase C terminal domain AHA_1990 PF02540 NAD synthase AHA_1993 PF12833 Helix-turn-helix domain AHA_1993 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AHA_1993 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AHA_1993 PF02805 Metal binding domain of Ada AHA_1996 PF05724 Thiopurine S-methyltransferase (TPMT) AHA_1997 PF00675 Insulinase (Peptidase family M16) AHA_1997 PF05193 Peptidase M16 inactive domain AHA_1998 PF00300 Histidine phosphatase superfamily (branch 1) AHA_2000 PF00892 EamA-like transporter family AHA_2001 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_2002 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AHA_2003 PF02559 CarD-like/TRCF domain AHA_2003 PF00270 DEAD/DEAH box helicase AHA_2003 PF00271 Helicase conserved C-terminal domain AHA_2003 PF17757 UvrB interaction domain AHA_2003 PF03461 TRCF domain AHA_2005 PF02687 FtsX-like permease family AHA_2005 PF12704 MacB-like periplasmic core domain AHA_2006 PF00005 ABC transporter AHA_2007 PF02687 FtsX-like permease family AHA_2007 PF12704 MacB-like periplasmic core domain AHA_2010 PF05698 Bacterial trigger factor protein (TF) C-terminus AHA_2010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHA_2010 PF05697 Bacterial trigger factor protein (TF) AHA_2011 PF00574 Clp protease AHA_2012 PF07724 AAA domain (Cdc48 subfamily) AHA_2012 PF10431 C-terminal, D2-small domain, of ClpB protein AHA_2012 PF06689 ClpX C4-type zinc finger AHA_2013 PF05362 Lon protease (S16) C-terminal proteolytic domain AHA_2013 PF02190 ATP-dependent protease La (LON) substrate-binding domain AHA_2013 PF00004 ATPase family associated with various cellular activities (AAA) AHA_2014 PF00216 Bacterial DNA-binding protein AHA_2015 PF13145 PPIC-type PPIASE domain AHA_2016 PF00005 ABC transporter AHA_2016 PF12848 ABC transporter AHA_2017 PF00589 Phage integrase family AHA_2017 PF12167 Arm DNA-binding domain AHA_2035 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AHA_2036 PF02463 RecF/RecN/SMC N terminal domain AHA_2039 PF05772 NinB protein AHA_2044 PF00817 impB/mucB/samB family AHA_2044 PF11799 impB/mucB/samB family C-terminal domain AHA_2044 PF13438 Domain of unknown function (DUF4113) AHA_2044 PF11798 IMS family HHH motif AHA_2045 PF00717 Peptidase S24-like AHA_2047 PF00816 H-NS histone family AHA_2056 PF00474 Sodium:solute symporter family AHA_2057 PF04341 Protein of unknown function, DUF485 AHA_2060 PF00378 Enoyl-CoA hydratase/isomerase AHA_2067 PF01235 Sodium:alanine symporter family AHA_2069 PF06167 Glucose-regulated metallo-peptidase M90 AHA_2070 PF01184 GPR1/FUN34/yaaH family AHA_2073 PF00376 MerR family regulatory protein AHA_2073 PF09278 MerR, DNA binding AHA_2074 PF00682 HMGL-like AHA_2075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AHA_2075 PF00289 Biotin carboxylase, N-terminal domain AHA_2075 PF02785 Biotin carboxylase C-terminal domain AHA_2075 PF00364 Biotin-requiring enzyme AHA_2076 PF00378 Enoyl-CoA hydratase/isomerase AHA_2077 PF01039 Carboxyl transferase domain AHA_2078 PF02770 Acyl-CoA dehydrogenase, middle domain AHA_2078 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHA_2078 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHA_2079 PF00171 Aldehyde dehydrogenase family AHA_2080 PF02770 Acyl-CoA dehydrogenase, middle domain AHA_2080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AHA_2080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AHA_2081 PF00378 Enoyl-CoA hydratase/isomerase AHA_2082 PF00378 Enoyl-CoA hydratase/isomerase AHA_2083 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AHA_2083 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AHA_2085 PF13520 Amino acid permease AHA_2086 PF01925 Sulfite exporter TauE/SafE AHA_2089 PF13188 PAS domain AHA_2089 PF00990 Diguanylate cyclase, GGDEF domain AHA_2089 PF00563 EAL domain AHA_2089 PF03707 Bacterial signalling protein N terminal repeat AHA_2090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_2090 PF03466 LysR substrate binding domain AHA_2091 PF00232 Glycosyl hydrolase family 1 AHA_2092 PF00563 EAL domain AHA_2092 PF13188 PAS domain AHA_2092 PF00990 Diguanylate cyclase, GGDEF domain AHA_2092 PF03707 Bacterial signalling protein N terminal repeat AHA_2094 PF01966 HD domain AHA_2096 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_2096 PF03466 LysR substrate binding domain AHA_2097 PF01261 Xylose isomerase-like TIM barrel AHA_2098 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AHA_2098 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AHA_2099 PF03466 LysR substrate binding domain AHA_2099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_2101 PF03279 Bacterial lipid A biosynthesis acyltransferase AHA_2102 PF03279 Bacterial lipid A biosynthesis acyltransferase AHA_2105 PF00990 Diguanylate cyclase, GGDEF domain AHA_2105 PF17151 Periplasmic sensor domain AHA_2107 PF00136 DNA polymerase family B AHA_2107 PF03104 DNA polymerase family B, exonuclease domain AHA_2114 PF01554 MatE AHA_2115 PF06786 Uncharacterised protein family (UPF0253) AHA_2116 PF00677 Lumazine binding domain AHA_2118 PF13419 Haloacid dehalogenase-like hydrolase AHA_2119 PF01370 NAD dependent epimerase/dehydratase family AHA_2119 PF02222 ATP-grasp domain AHA_2120 PF00892 EamA-like transporter family AHA_2121 PF02525 Flavodoxin-like fold AHA_2127 PF17783 CvfB-like winged helix domain AHA_2127 PF13509 S1 domain AHA_2129 PF04269 Protein of unknown function, DUF440 AHA_2130 PF00912 Transglycosylase AHA_2131 PF04269 Protein of unknown function, DUF440 AHA_2132 PF03776 Septum formation topological specificity factor MinE AHA_2133 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AHA_2134 PF05209 Septum formation inhibitor MinC, N-terminal domain AHA_2134 PF03775 Septum formation inhibitor MinC, C-terminal domain AHA_2135 PF05166 YcgL domain AHA_2136 PF13406 Transglycosylase SLT domain AHA_2137 PF03313 Serine dehydratase alpha chain AHA_2137 PF03315 Serine dehydratase beta chain AHA_2138 PF03313 Serine dehydratase alpha chain AHA_2138 PF03315 Serine dehydratase beta chain AHA_2139 PF06865 Pyrimidine/purine nucleoside phosphorylase AHA_2140 PF00375 Sodium:dicarboxylate symporter family AHA_2141 PF00376 MerR family regulatory protein AHA_2141 PF09278 MerR, DNA binding AHA_2142 PF08668 HDOD domain AHA_2142 PF00563 EAL domain AHA_2143 PF02803 Thiolase, C-terminal domain AHA_2143 PF00108 Thiolase, N-terminal domain AHA_2144 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AHA_2145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AHA_2147 PF04542 Sigma-70 region 2 AHA_2147 PF08281 Sigma-70, region 4 AHA_2151 PF01882 Protein of unknown function DUF58 AHA_2152 PF17863 AAA lid domain AHA_2152 PF07726 ATPase family associated with various cellular activities (AAA) AHA_2153 PF00108 Thiolase, N-terminal domain AHA_2153 PF02803 Thiolase, C-terminal domain AHA_2154 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AHA_2154 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AHA_2154 PF00378 Enoyl-CoA hydratase/isomerase AHA_2156 PF07152 YaeQ protein AHA_2160 PF00158 Sigma-54 interaction domain AHA_2160 PF13188 PAS domain AHA_2160 PF02954 Bacterial regulatory protein, Fis family AHA_2161 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHA_2161 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHA_2162 PF00291 Pyridoxal-phosphate dependent enzyme AHA_2163 PF07687 Peptidase dimerisation domain AHA_2163 PF01546 Peptidase family M20/M25/M40 AHA_2164 PF01979 Amidohydrolase family AHA_2165 PF00696 Amino acid kinase family AHA_2166 PF00892 EamA-like transporter family AHA_2167 PF02625 XdhC and CoxI family AHA_2167 PF13478 XdhC Rossmann domain AHA_2169 PF12804 MobA-like NTP transferase domain AHA_2170 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_2170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AHA_2171 PF01979 Amidohydrolase family AHA_2172 PF00941 FAD binding domain in molybdopterin dehydrogenase AHA_2173 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AHA_2173 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AHA_2173 PF01799 [2Fe-2S] binding domain AHA_2174 PF00860 Permease family AHA_2175 PF01979 Amidohydrolase family AHA_2176 PF00860 Permease family AHA_2177 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AHA_2177 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AHA_2178 PF00941 FAD binding domain in molybdopterin dehydrogenase AHA_2178 PF03450 CO dehydrogenase flavoprotein C-terminal domain AHA_2179 PF01799 [2Fe-2S] binding domain AHA_2179 PF00111 2Fe-2S iron-sulfur cluster binding domain AHA_2181 PF05433 Glycine zipper 2TM domain AHA_2183 PF03606 C4-dicarboxylate anaerobic carrier AHA_2184 PF00501 AMP-binding enzyme AHA_2184 PF13193 AMP-binding enzyme C-terminal domain AHA_2186 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AHA_2186 PF01502 Phosphoribosyl-AMP cyclohydrolase AHA_2187 PF00977 Histidine biosynthesis protein AHA_2188 PF01627 Hpt domain AHA_2188 PF00512 His Kinase A (phospho-acceptor) domain AHA_2188 PF00072 Response regulator receiver domain AHA_2188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2189 PF00990 Diguanylate cyclase, GGDEF domain AHA_2189 PF08448 PAS fold AHA_2190 PF00072 Response regulator receiver domain AHA_2191 PF00977 Histidine biosynthesis protein AHA_2192 PF00117 Glutamine amidotransferase class-I AHA_2193 PF00475 Imidazoleglycerol-phosphate dehydratase AHA_2193 PF08645 Polynucleotide kinase 3 phosphatase AHA_2194 PF00155 Aminotransferase class I and II AHA_2195 PF00815 Histidinol dehydrogenase AHA_2196 PF08029 HisG, C-terminal domain AHA_2196 PF01634 ATP phosphoribosyltransferase AHA_2199 PF04851 Type III restriction enzyme, res subunit AHA_2199 PF13307 Helicase C-terminal domain AHA_2201 PF00814 Glycoprotease family AHA_2203 PF08241 Methyltransferase domain AHA_2203 PF12697 Alpha/beta hydrolase family AHA_2204 PF13193 AMP-binding enzyme C-terminal domain AHA_2204 PF00501 AMP-binding enzyme AHA_2205 PF01612 3'-5' exonuclease AHA_2205 PF00570 HRDC domain AHA_2206 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_2208 PF01207 Dihydrouridine synthase (Dus) AHA_2209 PF04304 Protein of unknown function (DUF454) AHA_2210 PF00156 Phosphoribosyl transferase domain AHA_2211 PF12169 DNA polymerase III subunits gamma and tau domain III AHA_2211 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AHA_2211 PF12170 DNA polymerase III tau subunit V interacting with alpha AHA_2212 PF02575 YbaB/EbfC DNA-binding family AHA_2215 PF00196 Bacterial regulatory proteins, luxR family AHA_2215 PF00072 Response regulator receiver domain AHA_2216 PF00571 CBS domain AHA_2216 PF01368 DHH family AHA_2216 PF02272 DHHA1 domain AHA_2216 PF01743 Poly A polymerase head domain AHA_2217 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AHA_2217 PF00270 DEAD/DEAH box helicase AHA_2217 PF04408 Helicase associated domain (HA2) AHA_2217 PF00271 Helicase conserved C-terminal domain AHA_2217 PF11898 Domain of unknown function (DUF3418) AHA_2219 PF01386 Ribosomal L25p family AHA_2220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2220 PF00512 His Kinase A (phospho-acceptor) domain AHA_2220 PF00672 HAMP domain AHA_2220 PF00072 Response regulator receiver domain AHA_2220 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHA_2220 PF01627 Hpt domain AHA_2221 PF00753 Metallo-beta-lactamase superfamily AHA_2222 PF00072 Response regulator receiver domain AHA_2224 PF02769 AIR synthase related protein, C-terminal domain AHA_2224 PF00586 AIR synthase related protein, N-terminal domain AHA_2227 PF17785 PUA-like domain AHA_2227 PF10672 S-adenosylmethionine-dependent methyltransferase AHA_2228 PF00669 Bacterial flagellin N-terminal helical region AHA_2228 PF07196 Flagellin hook IN motif AHA_2228 PF00700 Bacterial flagellin C-terminal helical region AHA_2229 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2229 PF00672 HAMP domain AHA_2230 PF00708 Acylphosphatase AHA_2231 PF02798 Glutathione S-transferase, N-terminal domain AHA_2231 PF00043 Glutathione S-transferase, C-terminal domain AHA_2233 PF01588 Putative tRNA binding domain AHA_2233 PF09334 tRNA synthetases class I (M) AHA_2233 PF08264 Anticodon-binding domain of tRNA AHA_2234 PF10609 NUBPL iron-transfer P-loop NTPase AHA_2235 PF00485 Phosphoribulokinase / Uridine kinase family AHA_2236 PF00692 dUTPase AHA_2238 PF01384 Phosphate transporter family AHA_2239 PF12111 Polyribonucleotide phosphorylase C terminal AHA_2239 PF10150 Ribonuclease E/G family AHA_2239 PF00575 S1 RNA binding domain AHA_2240 PF00849 RNA pseudouridylate synthase AHA_2240 PF01479 S4 domain AHA_2241 PF13419 Haloacid dehalogenase-like hydrolase AHA_2242 PF02545 Maf-like protein AHA_2243 PF07690 Major Facilitator Superfamily AHA_2244 PF03466 LysR substrate binding domain AHA_2244 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_2246 PF02620 Large ribosomal RNA subunit accumulation protein YceD AHA_2247 PF01783 Ribosomal L32p protein family AHA_2248 PF02504 Fatty acid synthesis protein AHA_2249 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AHA_2249 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AHA_2250 PF00698 Acyl transferase domain AHA_2252 PF00550 Phosphopantetheine attachment site AHA_2253 PF02801 Beta-ketoacyl synthase, C-terminal domain AHA_2253 PF00109 Beta-ketoacyl synthase, N-terminal domain AHA_2254 PF01063 Amino-transferase class IV AHA_2255 PF02618 YceG-like family AHA_2256 PF02223 Thymidylate kinase AHA_2257 PF09115 DNA polymerase III, delta subunit, C terminal AHA_2258 PF01026 TatD related DNase AHA_2259 PF00589 Phage integrase family AHA_2262 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AHA_2262 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AHA_2262 PF01189 16S rRNA methyltransferase RsmB/F AHA_2263 PF02470 MlaD protein AHA_2266 PF00285 Citrate synthase, C-terminal domain AHA_2267 PF03972 MmgE/PrpD family AHA_2270 PF06974 Protein of unknown function (DUF1298) AHA_2270 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AHA_2275 PF00106 short chain dehydrogenase AHA_2277 PF07130 YebG protein AHA_2279 PF05362 Lon protease (S16) C-terminal proteolytic domain AHA_2279 PF13654 AAA domain AHA_2280 PF07977 FabA-like domain AHA_2281 PF04957 Ribosome modulation factor AHA_2283 PF16326 ABC transporter C-terminal domain AHA_2283 PF00005 ABC transporter AHA_2283 PF12848 ABC transporter AHA_2285 PF01170 Putative RNA methylase family UPF0020 AHA_2285 PF10672 S-adenosylmethionine-dependent methyltransferase AHA_2285 PF02926 THUMP domain AHA_2286 PF07126 Cell-division protein ZapC AHA_2287 PF01180 Dihydroorotate dehydrogenase AHA_2288 PF05088 Bacterial NAD-glutamate dehydrogenase AHA_2290 PF11940 Domain of unknown function (DUF3458) Ig-like fold AHA_2290 PF01433 Peptidase family M1 domain AHA_2290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AHA_2291 PF03572 Peptidase family S41 AHA_2291 PF00595 PDZ domain AHA_2291 PF11818 C-terminal domain of tail specific protease (DUF3340) AHA_2291 PF17804 Tail specific protease N-terminal domain AHA_2292 PF17516 ProQ C-terminal domain AHA_2292 PF04352 ProQ/FINO family AHA_2293 PF13185 GAF domain AHA_2295 PF00115 Cytochrome C and Quinol oxidase polypeptide I AHA_2298 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AHA_2298 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AHA_2300 PF00403 Heavy-metal-associated domain AHA_2303 PF13545 Crp-like helix-turn-helix domain AHA_2303 PF00027 Cyclic nucleotide-binding domain AHA_2304 PF00582 Universal stress protein family AHA_2305 PF01171 PP-loop family AHA_2308 PF13417 Glutathione S-transferase, N-terminal domain AHA_2309 PF05025 RbsD / FucU transport protein family AHA_2310 PF00005 ABC transporter AHA_2311 PF02653 Branched-chain amino acid transport system / permease component AHA_2312 PF13407 Periplasmic binding protein domain AHA_2313 PF00294 pfkB family carbohydrate kinase AHA_2314 PF00356 Bacterial regulatory proteins, lacI family AHA_2315 PF00563 EAL domain AHA_2315 PF00990 Diguanylate cyclase, GGDEF domain AHA_2315 PF03707 Bacterial signalling protein N terminal repeat AHA_2317 PF02146 Sir2 family AHA_2320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2320 PF00512 His Kinase A (phospho-acceptor) domain AHA_2320 PF09456 RcsC Alpha-Beta-Loop (ABL) AHA_2320 PF00072 Response regulator receiver domain AHA_2321 PF00216 Bacterial DNA-binding protein AHA_2322 PF03483 B3/4 domain AHA_2322 PF03484 tRNA synthetase B5 domain AHA_2322 PF03147 Ferredoxin-fold anticodon binding domain AHA_2322 PF01588 Putative tRNA binding domain AHA_2322 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AHA_2323 PF01409 tRNA synthetases class II core domain (F) AHA_2323 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AHA_2324 PF00453 Ribosomal protein L20 AHA_2325 PF01632 Ribosomal protein L35 AHA_2326 PF05198 Translation initiation factor IF-3, N-terminal domain AHA_2326 PF00707 Translation initiation factor IF-3, C-terminal domain AHA_2327 PF03129 Anticodon binding domain AHA_2327 PF02824 TGS domain AHA_2327 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AHA_2327 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AHA_2329 PF04055 Radical SAM superfamily AHA_2330 PF03989 DNA gyrase C-terminal domain, beta-propeller AHA_2330 PF00521 DNA gyrase/topoisomerase IV, subunit A AHA_2332 PF13419 Haloacid dehalogenase-like hydrolase AHA_2333 PF02867 Ribonucleotide reductase, barrel domain AHA_2333 PF03477 ATP cone domain AHA_2333 PF00317 Ribonucleotide reductase, all-alpha domain AHA_2334 PF00268 Ribonucleotide reductase, small chain AHA_2335 PF00111 2Fe-2S iron-sulfur cluster binding domain AHA_2336 PF06725 3D domain AHA_2336 PF03562 MltA specific insert domain AHA_2337 PF06945 Protein of unknown function (DUF1289) AHA_2339 PF03613 PTS system mannose/fructose/sorbose family IID component AHA_2340 PF03609 PTS system sorbose-specific iic component AHA_2341 PF03830 PTS system sorbose subfamily IIB component AHA_2341 PF03610 PTS system fructose IIA component AHA_2344 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHA_2344 PF00356 Bacterial regulatory proteins, lacI family AHA_2345 PF06560 Glucose-6-phosphate isomerase (GPI) AHA_2346 PF02378 Phosphotransferase system, EIIC AHA_2346 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AHA_2347 PF00294 pfkB family carbohydrate kinase AHA_2348 PF00381 PTS HPr component phosphorylation site AHA_2348 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHA_2349 PF00356 Bacterial regulatory proteins, lacI family AHA_2349 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AHA_2350 PF03222 Tryptophan/tyrosine permease family AHA_2353 PF00271 Helicase conserved C-terminal domain AHA_2353 PF00270 DEAD/DEAH box helicase AHA_2355 PF01264 Chorismate synthase AHA_2356 PF05175 Methyltransferase small domain AHA_2357 PF01713 Smr domain AHA_2359 PF00990 Diguanylate cyclase, GGDEF domain AHA_2359 PF08448 PAS fold AHA_2360 PF00300 Histidine phosphatase superfamily (branch 1) AHA_2363 PF00704 Glycosyl hydrolases family 18 AHA_2363 PF08329 Chitinase A, N-terminal domain AHA_2365 PF03831 PhnA domain AHA_2365 PF08274 PhnA Zinc-Ribbon AHA_2368 PF02567 Phenazine biosynthesis-like protein AHA_2373 PF01327 Polypeptide deformylase AHA_2376 PF05036 Sporulation related domain AHA_2376 PF03330 Lytic transglycolase AHA_2377 PF16330 MukB hinge domain AHA_2377 PF04310 MukB N-terminal AHA_2378 PF04288 MukE-like family AHA_2379 PF17192 MukF middle domain AHA_2379 PF17193 MukF C-terminal domain AHA_2379 PF03882 MukF winged-helix domain AHA_2380 PF13847 Methyltransferase domain AHA_2381 PF02698 DUF218 domain AHA_2382 PF00121 Triosephosphate isomerase AHA_2383 PF00365 Phosphofructokinase AHA_2384 PF07687 Peptidase dimerisation domain AHA_2384 PF01546 Peptidase family M20/M25/M40 AHA_2385 PF13419 Haloacid dehalogenase-like hydrolase AHA_2386 PF00883 Cytosol aminopeptidase family, catalytic domain AHA_2386 PF02789 Cytosol aminopeptidase family, N-terminal domain AHA_2395 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHA_2395 PF00128 Alpha amylase, catalytic domain AHA_2397 PF11398 Protein of unknown function (DUF2813) AHA_2398 PF14525 AraC-binding-like domain AHA_2398 PF12833 Helix-turn-helix domain AHA_2400 PF03466 LysR substrate binding domain AHA_2400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_2401 PF01925 Sulfite exporter TauE/SafE AHA_2402 PF03942 DTW domain AHA_2403 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_2403 PF18029 Glyoxalase-like domain AHA_2404 PF07478 D-ala D-ala ligase C-terminus AHA_2404 PF01820 D-ala D-ala ligase N-terminus AHA_2406 PF00255 Glutathione peroxidase AHA_2407 PF00271 Helicase conserved C-terminal domain AHA_2407 PF00270 DEAD/DEAH box helicase AHA_2408 PF13673 Acetyltransferase (GNAT) domain AHA_2410 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AHA_2412 PF01928 CYTH domain AHA_2414 PF00583 Acetyltransferase (GNAT) family AHA_2415 PF00465 Iron-containing alcohol dehydrogenase AHA_2416 PF03992 Antibiotic biosynthesis monooxygenase AHA_2417 PF08543 Phosphomethylpyrimidine kinase AHA_2421 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AHA_2421 PF00561 alpha/beta hydrolase fold AHA_2422 PF01575 MaoC like domain AHA_2425 PF00005 ABC transporter AHA_2425 PF00664 ABC transporter transmembrane region AHA_2427 PF00664 ABC transporter transmembrane region AHA_2427 PF00005 ABC transporter AHA_2428 PF01627 Hpt domain AHA_2428 PF00672 HAMP domain AHA_2428 PF00512 His Kinase A (phospho-acceptor) domain AHA_2428 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AHA_2428 PF00072 Response regulator receiver domain AHA_2428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2429 PF00085 Thioredoxin AHA_2430 PF00939 Sodium:sulfate symporter transmembrane region AHA_2431 PF00343 Carbohydrate phosphorylase AHA_2435 PF04715 Anthranilate synthase component I, N terminal region AHA_2435 PF00425 chorismate binding enzyme AHA_2436 PF00293 NUDIX domain AHA_2437 PF03222 Tryptophan/tyrosine permease family AHA_2438 PF00375 Sodium:dicarboxylate symporter family AHA_2439 PF16124 RecQ zinc-binding AHA_2439 PF09382 RQC domain AHA_2439 PF00270 DEAD/DEAH box helicase AHA_2439 PF00570 HRDC domain AHA_2439 PF00271 Helicase conserved C-terminal domain AHA_2440 PF06798 PrkA serine protein kinase C-terminal domain AHA_2440 PF08298 PrkA AAA domain AHA_2441 PF04285 Protein of unknown function (DUF444) AHA_2442 PF04293 SpoVR like protein AHA_2443 PF07840 FadR C-terminal domain AHA_2443 PF00392 Bacterial regulatory proteins, gntR family AHA_2444 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AHA_2445 PF02600 Disulfide bond formation protein DsbB AHA_2446 PF09335 SNARE associated Golgi protein AHA_2448 PF02151 UvrB/uvrC motif AHA_2448 PF17757 UvrB interaction domain AHA_2448 PF12344 Ultra-violet resistance protein B AHA_2448 PF04851 Type III restriction enzyme, res subunit AHA_2448 PF00271 Helicase conserved C-terminal domain AHA_2450 PF06826 Predicted Permease Membrane Region AHA_2450 PF02080 TrkA-C domain AHA_2451 PF01464 Transglycosylase SLT domain AHA_2451 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_2454 PF01970 Tripartite tricarboxylate transporter TctA family AHA_2455 PF00072 Response regulator receiver domain AHA_2455 PF08279 HTH domain AHA_2455 PF12431 Transcriptional regulator AHA_2456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2456 PF00989 PAS fold AHA_2456 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AHA_2456 PF17203 Single cache domain 3 AHA_2457 PF01047 MarR family AHA_2457 PF00480 ROK family AHA_2458 PF00672 HAMP domain AHA_2458 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2458 PF17200 Single Cache domain 2 AHA_2459 PF02810 SEC-C motif AHA_2460 PF01266 FAD dependent oxidoreductase AHA_2460 PF04324 BFD-like [2Fe-2S] binding domain AHA_2461 PF00890 FAD binding domain AHA_2462 PF02754 Cysteine-rich domain AHA_2462 PF13183 4Fe-4S dicluster domain AHA_2464 PF02335 Cytochrome c552 AHA_2465 PF13435 Cytochrome c554 and c-prime AHA_2465 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AHA_2466 PF13247 4Fe-4S dicluster domain AHA_2466 PF00037 4Fe-4S binding domain AHA_2467 PF03916 Polysulphide reductase, NrfD AHA_2468 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AHA_2468 PF01578 Cytochrome C assembly protein AHA_2469 PF08534 Redoxin AHA_2470 PF03918 Cytochrome C biogenesis protein AHA_2471 PF00293 NUDIX domain AHA_2472 PF00768 D-alanyl-D-alanine carboxypeptidase AHA_2473 PF00668 Condensation domain AHA_2473 PF13193 AMP-binding enzyme C-terminal domain AHA_2473 PF00975 Thioesterase domain AHA_2473 PF00550 Phosphopantetheine attachment site AHA_2473 PF00501 AMP-binding enzyme AHA_2474 PF00501 AMP-binding enzyme AHA_2474 PF00668 Condensation domain AHA_2474 PF13193 AMP-binding enzyme C-terminal domain AHA_2474 PF07993 Male sterility protein AHA_2474 PF00550 Phosphopantetheine attachment site AHA_2476 PF00550 Phosphopantetheine attachment site AHA_2476 PF00975 Thioesterase domain AHA_2476 PF13193 AMP-binding enzyme C-terminal domain AHA_2476 PF00501 AMP-binding enzyme AHA_2476 PF00668 Condensation domain AHA_2477 PF00857 Isochorismatase family AHA_2477 PF00550 Phosphopantetheine attachment site AHA_2478 PF13193 AMP-binding enzyme C-terminal domain AHA_2478 PF00501 AMP-binding enzyme AHA_2479 PF00425 chorismate binding enzyme AHA_2480 PF07273 Protein of unknown function (DUF1439) AHA_2482 PF00483 Nucleotidyl transferase AHA_2484 PF03707 Bacterial signalling protein N terminal repeat AHA_2484 PF00990 Diguanylate cyclase, GGDEF domain AHA_2484 PF00563 EAL domain AHA_2486 PF00294 pfkB family carbohydrate kinase AHA_2488 PF00762 Ferrochelatase AHA_2489 PF05191 Adenylate kinase, active site lid AHA_2490 PF00183 Hsp90 protein AHA_2490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2491 PF02132 RecR protein AHA_2491 PF13662 Toprim domain AHA_2492 PF02634 FdhD/NarQ family AHA_2493 PF01590 GAF domain AHA_2493 PF02954 Bacterial regulatory protein, Fis family AHA_2493 PF00158 Sigma-54 interaction domain AHA_2496 PF12800 4Fe-4S binding domain AHA_2496 PF13247 4Fe-4S dicluster domain AHA_2498 PF02705 K+ potassium transporter AHA_2499 PF00037 4Fe-4S binding domain AHA_2499 PF12798 4Fe-4S binding domain AHA_2500 PF00361 Proton-conducting membrane transporter AHA_2501 PF00146 NADH dehydrogenase AHA_2502 PF00374 Nickel-dependent hydrogenase AHA_2502 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AHA_2502 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AHA_2503 PF12838 4Fe-4S dicluster domain AHA_2504 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AHA_2505 PF07450 Formate hydrogenlyase maturation protein HycH AHA_2506 PF01750 Hydrogenase maturation protease AHA_2508 PF03841 L-seryl-tRNA selenium transferase AHA_2508 PF12390 Selenocysteine synthase N terminal AHA_2509 PF09106 Elongation factor SelB, winged helix AHA_2509 PF00009 Elongation factor Tu GTP binding domain AHA_2509 PF09107 Elongation factor SelB, winged helix AHA_2509 PF09105 Elongation factor SelB, winged helix AHA_2509 PF03144 Elongation factor Tu domain 2 AHA_2510 PF07503 HypF finger AHA_2510 PF01300 Telomere recombination AHA_2510 PF17788 HypF Kae1-like domain AHA_2510 PF00708 Acylphosphatase AHA_2511 PF01455 HupF/HypC family AHA_2512 PF01924 Hydrogenase formation hypA family AHA_2513 PF00586 AIR synthase related protein, N-terminal domain AHA_2513 PF02769 AIR synthase related protein, C-terminal domain AHA_2514 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AHA_2515 PF02492 CobW/HypB/UreG, nucleotide-binding domain AHA_2516 PF00005 ABC transporter AHA_2516 PF08402 TOBE domain AHA_2517 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_2517 PF00005 ABC transporter AHA_2518 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2518 PF12911 N-terminal TM domain of oligopeptide transport permease C AHA_2519 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_2521 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE AHA_2522 PF01750 Hydrogenase maturation protease AHA_2523 PF00374 Nickel-dependent hydrogenase AHA_2524 PF03916 Polysulphide reductase, NrfD AHA_2525 PF13247 4Fe-4S dicluster domain AHA_2526 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AHA_2526 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AHA_2527 PF00072 Response regulator receiver domain AHA_2529 PF01627 Hpt domain AHA_2529 PF02895 Signal transducing histidine kinase, homodimeric domain AHA_2529 PF01584 CheW-like domain AHA_2529 PF09078 CheY binding AHA_2529 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2530 PF17202 Single cache domain 3 AHA_2530 PF00672 HAMP domain AHA_2530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2531 PF01584 CheW-like domain AHA_2532 PF01739 CheR methyltransferase, SAM binding domain AHA_2532 PF03705 CheR methyltransferase, all-alpha domain AHA_2533 PF00072 Response regulator receiver domain AHA_2533 PF01339 CheB methylesterase AHA_2534 PF00563 EAL domain AHA_2534 PF03707 Bacterial signalling protein N terminal repeat AHA_2534 PF00990 Diguanylate cyclase, GGDEF domain AHA_2535 PF12729 Four helix bundle sensory module for signal transduction AHA_2535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2535 PF00672 HAMP domain AHA_2536 PF00842 Alanine racemase, C-terminal domain AHA_2536 PF01168 Alanine racemase, N-terminal domain AHA_2540 PF00916 Sulfate permease family AHA_2540 PF01740 STAS domain AHA_2543 PF03350 Uncharacterized protein family, UPF0114 AHA_2546 PF03239 Iron permease FTR1 family AHA_2547 PF01593 Flavin containing amine oxidoreductase AHA_2550 PF07690 Major Facilitator Superfamily AHA_2552 PF00005 ABC transporter AHA_2553 PF02687 FtsX-like permease family AHA_2553 PF12704 MacB-like periplasmic core domain AHA_2556 PF02913 FAD linked oxidases, C-terminal domain AHA_2556 PF01565 FAD binding domain AHA_2557 PF02589 LUD domain AHA_2558 PF13183 4Fe-4S dicluster domain AHA_2558 PF11870 Domain of unknown function (DUF3390) AHA_2558 PF02589 LUD domain AHA_2559 PF02754 Cysteine-rich domain AHA_2560 PF02652 L-lactate permease AHA_2561 PF03466 LysR substrate binding domain AHA_2561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_2563 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_2564 PF00561 alpha/beta hydrolase fold AHA_2568 PF01625 Peptide methionine sulfoxide reductase AHA_2569 PF00583 Acetyltransferase (GNAT) family AHA_2569 PF00696 Amino acid kinase family AHA_2570 PF01842 ACT domain AHA_2570 PF00696 Amino acid kinase family AHA_2572 PF00884 Sulfatase AHA_2573 PF02016 LD-carboxypeptidase N-terminal domain AHA_2573 PF17676 LD-carboxypeptidase C-terminal domain AHA_2574 PF01734 Patatin-like phospholipase AHA_2575 PF17179 4Fe-4S dicluster domain AHA_2576 PF00175 Oxidoreductase NAD-binding domain AHA_2576 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AHA_2577 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHA_2577 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHA_2577 PF13187 4Fe-4S dicluster domain AHA_2578 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHA_2578 PF14824 Sirohaem biosynthesis protein central AHA_2578 PF10414 Sirohaem synthase dimerisation region AHA_2580 PF01906 Putative heavy-metal-binding AHA_2584 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_2585 PF05728 Uncharacterised protein family (UPF0227) AHA_2586 PF00860 Permease family AHA_2587 PF01432 Peptidase family M3 AHA_2587 PF08439 Oligopeptidase F AHA_2588 PF01432 Peptidase family M3 AHA_2588 PF08439 Oligopeptidase F AHA_2589 PF05661 Protein of unknown function (DUF808) AHA_2591 PF07549 SecD/SecF GG Motif AHA_2591 PF02355 Protein export membrane protein AHA_2592 PF07549 SecD/SecF GG Motif AHA_2592 PF13721 SecD export protein N-terminal TM region AHA_2592 PF02355 Protein export membrane protein AHA_2599 PF01230 HIT domain AHA_2600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2600 PF00672 HAMP domain AHA_2602 PF01979 Amidohydrolase family AHA_2605 PF00375 Sodium:dicarboxylate symporter family AHA_2607 PF00842 Alanine racemase, C-terminal domain AHA_2607 PF01168 Alanine racemase, N-terminal domain AHA_2608 PF03741 Integral membrane protein TerC family AHA_2609 PF00005 ABC transporter AHA_2609 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_2610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_2610 PF00005 ABC transporter AHA_2611 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2611 PF12911 N-terminal TM domain of oligopeptide transport permease C AHA_2612 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2613 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_2614 PF01914 MarC family integral membrane protein AHA_2616 PF00465 Iron-containing alcohol dehydrogenase AHA_2616 PF00171 Aldehyde dehydrogenase family AHA_2617 PF01966 HD domain AHA_2618 PF07694 5TMR of 5TMR-LYT AHA_2618 PF06580 Histidine kinase AHA_2619 PF00072 Response regulator receiver domain AHA_2619 PF04397 LytTr DNA-binding domain AHA_2620 PF02554 Carbon starvation protein CstA AHA_2621 PF11742 Protein of unknown function (DUF3302) AHA_2622 PF00529 HlyD membrane-fusion protein of T1SS AHA_2622 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_2623 PF00271 Helicase conserved C-terminal domain AHA_2623 PF04851 Type III restriction enzyme, res subunit AHA_2624 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AHA_2625 PF00462 Glutaredoxin AHA_2627 PF00155 Aminotransferase class I and II AHA_2628 PF03606 C4-dicarboxylate anaerobic carrier AHA_2629 PF07055 Enoyl reductase FAD binding domain AHA_2629 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AHA_2629 PF12241 Trans-2-enoyl-CoA reductase catalytic region AHA_2630 PF08447 PAS fold AHA_2630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2630 PF13426 PAS domain AHA_2633 PF00892 EamA-like transporter family AHA_2634 PF02508 Rnf-Nqr subunit, membrane protein AHA_2635 PF04060 Putative Fe-S cluster AHA_2636 PF10531 SLBB domain AHA_2636 PF13375 RnfC Barrel sandwich hybrid domain AHA_2636 PF12838 4Fe-4S dicluster domain AHA_2636 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AHA_2637 PF03116 NQR2, RnfD, RnfE family AHA_2638 PF04205 FMN-binding domain AHA_2639 PF02508 Rnf-Nqr subunit, membrane protein AHA_2640 PF00730 HhH-GPD superfamily base excision DNA repair protein AHA_2640 PF10576 Iron-sulfur binding domain of endonuclease III AHA_2640 PF00633 Helix-hairpin-helix motif AHA_2641 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_2642 PF18393 MotY N-terminal domain AHA_2642 PF00691 OmpA family AHA_2643 PF12729 Four helix bundle sensory module for signal transduction AHA_2643 PF00672 HAMP domain AHA_2643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2644 PF00929 Exonuclease AHA_2645 PF13726 Na+-H+ antiporter family AHA_2645 PF03553 Na+/H+ antiporter family AHA_2646 PF03880 DbpA RNA binding domain AHA_2646 PF00270 DEAD/DEAH box helicase AHA_2646 PF00271 Helicase conserved C-terminal domain AHA_2647 PF03061 Thioesterase superfamily AHA_2649 PF13183 4Fe-4S dicluster domain AHA_2649 PF01565 FAD binding domain AHA_2649 PF02913 FAD linked oxidases, C-terminal domain AHA_2651 PF03471 Transporter associated domain AHA_2651 PF03741 Integral membrane protein TerC family AHA_2652 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AHA_2653 PF00962 Adenosine/AMP deaminase AHA_2654 PF13344 Haloacid dehalogenase-like hydrolase AHA_2655 PF00999 Sodium/hydrogen exchanger family AHA_2655 PF02254 TrkA-N domain AHA_2657 PF00733 Asparagine synthase AHA_2657 PF13537 Glutamine amidotransferase domain AHA_2659 PF00043 Glutathione S-transferase, C-terminal domain AHA_2659 PF13417 Glutathione S-transferase, N-terminal domain AHA_2660 PF02798 Glutathione S-transferase, N-terminal domain AHA_2660 PF14497 Glutathione S-transferase, C-terminal domain AHA_2662 PF04209 homogentisate 1,2-dioxygenase AHA_2663 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_2665 PF00849 RNA pseudouridylate synthase AHA_2666 PF00990 Diguanylate cyclase, GGDEF domain AHA_2666 PF13426 PAS domain AHA_2666 PF00563 EAL domain AHA_2667 PF08447 PAS fold AHA_2667 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2669 PF03706 Lysylphosphatidylglycerol synthase TM region AHA_2669 PF09924 Uncharacterised conserved protein (DUF2156) AHA_2670 PF08019 Phosphoethanolamine transferase EptA/EptB AHA_2670 PF00884 Sulfatase AHA_2674 PF01027 Inhibitor of apoptosis-promoting Bax1 AHA_2675 PF12805 FUSC-like inner membrane protein yccS AHA_2676 PF04358 DsrC like protein AHA_2677 PF05036 Sporulation related domain AHA_2678 PF02875 Mur ligase family, glutamate ligase domain AHA_2678 PF08245 Mur ligase middle domain AHA_2679 PF17848 Acetyl-coA carboxylase zinc finger domain AHA_2679 PF01039 Carboxyl transferase domain AHA_2680 PF01416 tRNA pseudouridine synthase AHA_2682 PF02774 Semialdehyde dehydrogenase, dimerisation domain AHA_2682 PF01118 Semialdehyde dehydrogenase, NAD binding domain AHA_2683 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHA_2683 PF11890 Domain of unknown function (DUF3410) AHA_2683 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHA_2684 PF01569 PAP2 superfamily AHA_2685 PF03180 NLPA lipoprotein AHA_2687 PF00082 Subtilase family AHA_2687 PF01483 Proprotein convertase P-domain AHA_2689 PF14310 Fibronectin type III-like domain AHA_2689 PF01915 Glycosyl hydrolase family 3 C-terminal domain AHA_2689 PF00933 Glycosyl hydrolase family 3 N terminal domain AHA_2691 PF02896 PEP-utilising enzyme, TIM barrel domain AHA_2691 PF00391 PEP-utilising enzyme, mobile domain AHA_2691 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AHA_2692 PF03618 Kinase/pyrophosphorylase AHA_2694 PF00324 Amino acid permease AHA_2701 PF03412 Peptidase C39 family AHA_2701 PF00664 ABC transporter transmembrane region AHA_2701 PF00005 ABC transporter AHA_2702 PF16199 Radical_SAM C-terminal domain AHA_2702 PF04055 Radical SAM superfamily AHA_2703 PF00310 Glutamine amidotransferases class-II AHA_2703 PF04898 Glutamate synthase central domain AHA_2703 PF01493 GXGXG motif AHA_2703 PF01645 Conserved region in glutamate synthase AHA_2704 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_2704 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AHA_2705 PF00005 ABC transporter AHA_2706 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2707 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_2710 PF00376 MerR family regulatory protein AHA_2710 PF09278 MerR, DNA binding AHA_2713 PF14521 Lysine-specific metallo-endopeptidase AHA_2715 PF00271 Helicase conserved C-terminal domain AHA_2715 PF00270 DEAD/DEAH box helicase AHA_2716 PF13302 Acetyltransferase (GNAT) domain AHA_2720 PF08378 Nuclease-related domain AHA_2721 PF07759 Protein of unknown function (DUF1615) AHA_2722 PF08502 LeuA allosteric (dimerisation) domain AHA_2722 PF00682 HMGL-like AHA_2723 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AHA_2723 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AHA_2723 PF02142 MGS-like domain AHA_2724 PF00117 Glutamine amidotransferase class-I AHA_2724 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AHA_2725 PF05173 Dihydrodipicolinate reductase, C-terminus AHA_2725 PF01113 Dihydrodipicolinate reductase, N-terminus AHA_2727 PF01812 5-formyltetrahydrofolate cyclo-ligase family AHA_2728 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AHA_2729 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AHA_2730 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AHA_2731 PF01842 ACT domain AHA_2731 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHA_2731 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHA_2732 PF01219 Prokaryotic diacylglycerol kinase AHA_2733 PF00793 DAHP synthetase I family AHA_2734 PF00583 Acetyltransferase (GNAT) family AHA_2735 PF00005 ABC transporter AHA_2736 PF01032 FecCD transport family AHA_2737 PF00072 Response regulator receiver domain AHA_2737 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2737 PF01627 Hpt domain AHA_2737 PF00989 PAS fold AHA_2737 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_2737 PF00512 His Kinase A (phospho-acceptor) domain AHA_2739 PF00437 Type II/IV secretion system protein AHA_2740 PF00483 Nucleotidyl transferase AHA_2743 PF02421 Ferrous iron transport protein B AHA_2743 PF07664 Ferrous iron transport protein B C terminus AHA_2743 PF07670 Nucleoside recognition AHA_2745 PF01253 Translation initiation factor SUI1 AHA_2746 PF01169 Uncharacterized protein family UPF0016 AHA_2752 PF13185 GAF domain AHA_2752 PF00990 Diguanylate cyclase, GGDEF domain AHA_2754 PF01966 HD domain AHA_2755 PF01406 tRNA synthetases class I (C) catalytic domain AHA_2755 PF09190 DALR domain AHA_2756 PF09190 DALR domain AHA_2756 PF01406 tRNA synthetases class I (C) catalytic domain AHA_2757 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AHA_2759 PF00149 Calcineurin-like phosphoesterase AHA_2760 PF03916 Polysulphide reductase, NrfD AHA_2761 PF13247 4Fe-4S dicluster domain AHA_2761 PF00037 4Fe-4S binding domain AHA_2765 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AHA_2766 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB AHA_2767 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2767 PF00672 HAMP domain AHA_2768 PF08447 PAS fold AHA_2768 PF13426 PAS domain AHA_2768 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_2772 PF01066 CDP-alcohol phosphatidyltransferase AHA_2773 PF02151 UvrB/uvrC motif AHA_2773 PF08459 UvrC Helix-hairpin-helix N-terminal AHA_2773 PF01541 GIY-YIG catalytic domain AHA_2774 PF00196 Bacterial regulatory proteins, luxR family AHA_2774 PF00072 Response regulator receiver domain AHA_2775 PF02348 Cytidylyltransferase AHA_2776 PF03966 Trm112p-like protein AHA_2777 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AHA_2778 PF00005 ABC transporter AHA_2778 PF00664 ABC transporter transmembrane region AHA_2779 PF03772 Competence protein AHA_2779 PF00753 Metallo-beta-lactamase superfamily AHA_2782 PF05872 Bacterial protein of unknown function (DUF853) AHA_2783 PF00155 Aminotransferase class I and II AHA_2785 PF13609 Gram-negative porin AHA_2786 PF13307 Helicase C-terminal domain AHA_2786 PF06733 DEAD_2 AHA_2788 PF00850 Histone deacetylase domain AHA_2789 PF07690 Major Facilitator Superfamily AHA_2790 PF01926 50S ribosome-binding GTPase AHA_2791 PF00245 Alkaline phosphatase AHA_2792 PF00245 Alkaline phosphatase AHA_2795 PF14760 Rnk N-terminus AHA_2795 PF01272 Transcription elongation factor, GreA/GreB, C-term AHA_2796 PF00072 Response regulator receiver domain AHA_2796 PF00196 Bacterial regulatory proteins, luxR family AHA_2797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2797 PF07730 Histidine kinase AHA_2797 PF05231 MASE1 AHA_2798 PF07690 Major Facilitator Superfamily AHA_2799 PF00990 Diguanylate cyclase, GGDEF domain AHA_2799 PF08448 PAS fold AHA_2800 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_2801 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2802 PF00005 ABC transporter AHA_2805 PF04116 Fatty acid hydroxylase superfamily AHA_2806 PF13520 Amino acid permease AHA_2807 PF02607 B12 binding domain AHA_2807 PF02574 Homocysteine S-methyltransferase AHA_2807 PF00809 Pterin binding enzyme AHA_2807 PF02965 Vitamin B12 dependent methionine synthase, activation domain AHA_2807 PF02310 B12 binding domain AHA_2809 PF03471 Transporter associated domain AHA_2809 PF01595 Cyclin M transmembrane N-terminal domain AHA_2809 PF00571 CBS domain AHA_2810 PF01895 PhoU domain AHA_2811 PF00005 ABC transporter AHA_2812 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2813 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2814 PF14437 MafB19-like deaminase AHA_2816 PF01274 Malate synthase AHA_2817 PF00463 Isocitrate lyase family AHA_2818 PF00308 Bacterial dnaA protein AHA_2821 PF00586 AIR synthase related protein, N-terminal domain AHA_2821 PF02769 AIR synthase related protein, C-terminal domain AHA_2822 PF00551 Formyl transferase AHA_2823 PF01784 NIF3 (NGG1p interacting factor 3) AHA_2824 PF00158 Sigma-54 interaction domain AHA_2824 PF00072 Response regulator receiver domain AHA_2824 PF02954 Bacterial regulatory protein, Fis family AHA_2825 PF13188 PAS domain AHA_2825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_2825 PF00512 His Kinase A (phospho-acceptor) domain AHA_2826 PF02954 Bacterial regulatory protein, Fis family AHA_2826 PF06490 Flagellar regulatory protein FleQ AHA_2826 PF00158 Sigma-54 interaction domain AHA_2828 PF01842 ACT domain AHA_2829 PF02503 Polyphosphate kinase middle domain AHA_2829 PF13090 Polyphosphate kinase C-terminal domain 2 AHA_2829 PF17941 Polyphosphate kinase C-terminal domain 1 AHA_2829 PF13089 Polyphosphate kinase N-terminal domain AHA_2830 PF02541 Ppx/GppA phosphatase family AHA_2831 PF03448 MgtE intracellular N domain AHA_2831 PF01769 Divalent cation transporter AHA_2831 PF00571 CBS domain AHA_2832 PF00669 Bacterial flagellin N-terminal helical region AHA_2833 PF00460 Flagella basal body rod protein AHA_2833 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHA_2834 PF10135 Rod binding protein AHA_2834 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AHA_2835 PF02119 Flagellar P-ring protein AHA_2836 PF02107 Flagellar L-ring protein AHA_2837 PF00460 Flagella basal body rod protein AHA_2837 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHA_2838 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHA_2838 PF00460 Flagella basal body rod protein AHA_2839 PF07559 Flagellar basal body protein FlaE AHA_2839 PF00460 Flagella basal body rod protein AHA_2839 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHA_2841 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AHA_2841 PF00460 Flagella basal body rod protein AHA_2842 PF00460 Flagella basal body rod protein AHA_2843 PF01739 CheR methyltransferase, SAM binding domain AHA_2843 PF03705 CheR methyltransferase, all-alpha domain AHA_2844 PF00072 Response regulator receiver domain AHA_2844 PF01584 CheW-like domain AHA_2845 PF13144 Chaperone for flagella basal body P-ring formation AHA_2848 PF12850 Calcineurin-like phosphoesterase superfamily domain AHA_2849 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_2851 PF01479 S4 domain AHA_2851 PF00849 RNA pseudouridylate synthase AHA_2853 PF01966 HD domain AHA_2853 PF11871 Domain of unknown function (DUF3391) AHA_2854 PF00923 Transaldolase/Fructose-6-phosphate aldolase AHA_2855 PF04055 Radical SAM superfamily AHA_2856 PF01228 Glycine radical AHA_2856 PF02901 Pyruvate formate lyase-like AHA_2857 PF00455 DeoR C terminal sensor domain AHA_2857 PF08220 DeoR-like helix-turn-helix domain AHA_2858 PF00892 EamA-like transporter family AHA_2859 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_2864 PF00313 'Cold-shock' DNA-binding domain AHA_2865 PF02817 e3 binding domain AHA_2865 PF00364 Biotin-requiring enzyme AHA_2865 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AHA_2866 PF02779 Transketolase, pyrimidine binding domain AHA_2866 PF02780 Transketolase, C-terminal domain AHA_2867 PF00676 Dehydrogenase E1 component AHA_2868 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AHA_2870 PF05472 DNA replication terminus site-binding protein (Ter protein) AHA_2871 PF00176 SNF2 family N-terminal domain AHA_2871 PF00271 Helicase conserved C-terminal domain AHA_2871 PF04434 SWIM zinc finger AHA_2872 PF04337 Protein of unknown function, DUF480 AHA_2874 PF06082 Exopolysaccharide biosynthesis protein YbjH AHA_2875 PF06251 Capsule biosynthesis GfcC AHA_2876 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AHA_2877 PF13614 AAA domain AHA_2877 PF13807 G-rich domain on putative tyrosine kinase AHA_2877 PF02706 Chain length determinant protein AHA_2878 PF01451 Low molecular weight phosphotyrosine protein phosphatase AHA_2879 PF10531 SLBB domain AHA_2879 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AHA_2879 PF02563 Polysaccharide biosynthesis/export protein AHA_2880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AHA_2880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AHA_2880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AHA_2881 PF01370 NAD dependent epimerase/dehydratase family AHA_2883 PF00535 Glycosyl transferase family 2 AHA_2885 PF00534 Glycosyl transferases group 1 AHA_2885 PF13439 Glycosyltransferase Family 4 AHA_2889 PF00953 Glycosyl transferase family 4 AHA_2891 PF02719 Polysaccharide biosynthesis protein AHA_2892 PF00953 Glycosyl transferase family 4 AHA_2893 PF01370 NAD dependent epimerase/dehydratase family AHA_2895 PF00293 NUDIX domain AHA_2899 PF00005 ABC transporter AHA_2900 PF01061 ABC-2 type transporter AHA_2901 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AHA_2902 PF16363 GDP-mannose 4,6 dehydratase AHA_2903 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AHA_2903 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AHA_2903 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AHA_2903 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AHA_2904 PF00483 Nucleotidyl transferase AHA_2904 PF01050 Mannose-6-phosphate isomerase AHA_2905 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AHA_2906 PF00483 Nucleotidyl transferase AHA_2907 PF04321 RmlD substrate binding domain AHA_2908 PF16363 GDP-mannose 4,6 dehydratase AHA_2909 PF02321 Outer membrane efflux protein AHA_2910 PF00873 AcrB/AcrD/AcrF family AHA_2911 PF00529 HlyD membrane-fusion protein of T1SS AHA_2911 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_2912 PF08361 MAATS-type transcriptional repressor, C-terminal region AHA_2912 PF00440 Bacterial regulatory proteins, tetR family AHA_2917 PF01479 S4 domain AHA_2917 PF00849 RNA pseudouridylate synthase AHA_2918 PF04079 Segregation and condensation complex subunit ScpB AHA_2919 PF02616 Segregation and condensation protein ScpA AHA_2920 PF01300 Telomere recombination AHA_2921 PF02811 PHP domain AHA_2923 PF00425 chorismate binding enzyme AHA_2923 PF04715 Anthranilate synthase component I, N terminal region AHA_2924 PF00117 Glutamine amidotransferase class-I AHA_2924 PF02885 Glycosyl transferase family, helical bundle domain AHA_2924 PF00591 Glycosyl transferase family, a/b domain AHA_2925 PF02885 Glycosyl transferase family, helical bundle domain AHA_2925 PF00591 Glycosyl transferase family, a/b domain AHA_2926 PF00218 Indole-3-glycerol phosphate synthase AHA_2926 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AHA_2927 PF00291 Pyridoxal-phosphate dependent enzyme AHA_2928 PF00290 Tryptophan synthase alpha chain AHA_2929 PF01734 Patatin-like phospholipase AHA_2930 PF04307 LexA-binding, inner membrane-associated putative hydrolase AHA_2934 PF07662 Na+ dependent nucleoside transporter C-terminus AHA_2934 PF01773 Na+ dependent nucleoside transporter N-terminus AHA_2934 PF07670 Nucleoside recognition AHA_2936 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AHA_2937 PF00005 ABC transporter AHA_2938 PF00528 Binding-protein-dependent transport system inner membrane component AHA_2939 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AHA_2941 PF07690 Major Facilitator Superfamily AHA_2942 PF01040 UbiA prenyltransferase family AHA_2943 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AHA_2944 PF00510 Cytochrome c oxidase subunit III AHA_2945 PF00115 Cytochrome C and Quinol oxidase polypeptide I AHA_2946 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AHA_2946 PF06481 COX Aromatic Rich Motif AHA_2948 PF00034 Cytochrome c AHA_2948 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AHA_2950 PF01156 Inosine-uridine preferring nucleoside hydrolase AHA_2953 PF00127 Copper binding proteins, plastocyanin/azurin family AHA_2954 PF02424 ApbE family AHA_2955 PF07690 Major Facilitator Superfamily AHA_2958 PF03372 Endonuclease/Exonuclease/phosphatase family AHA_2959 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_2960 PF00873 AcrB/AcrD/AcrF family AHA_2962 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_2962 PF00529 HlyD membrane-fusion protein of T1SS AHA_2963 PF00873 AcrB/AcrD/AcrF family AHA_2967 PF10437 Bacterial lipoate protein ligase C-terminus AHA_2967 PF03099 Biotin/lipoate A/B protein ligase family AHA_2968 PF03707 Bacterial signalling protein N terminal repeat AHA_2968 PF00990 Diguanylate cyclase, GGDEF domain AHA_2968 PF00563 EAL domain AHA_2969 PF00873 AcrB/AcrD/AcrF family AHA_2972 PF04143 Sulphur transport AHA_2973 PF01022 Bacterial regulatory protein, arsR family AHA_2976 PF02308 MgtC family AHA_2977 PF00356 Bacterial regulatory proteins, lacI family AHA_2977 PF13407 Periplasmic binding protein domain AHA_2978 PF00251 Glycosyl hydrolases family 32 N-terminal domain AHA_2978 PF08244 Glycosyl hydrolases family 32 C terminal AHA_2979 PF02378 Phosphotransferase system, EIIC AHA_2979 PF00367 phosphotransferase system, EIIB AHA_2980 PF00294 pfkB family carbohydrate kinase AHA_2981 PF02264 LamB porin AHA_2981 PF11471 Maltoporin periplasmic N-terminal extension AHA_2982 PF00226 DnaJ domain AHA_2982 PF01556 DnaJ C terminal domain AHA_2982 PF00684 DnaJ central domain AHA_2983 PF00012 Hsp70 protein AHA_2984 PF01025 GrpE AHA_2985 PF01513 ATP-NAD kinase AHA_2986 PF02463 RecF/RecN/SMC N terminal domain AHA_2987 PF02833 DHHA2 domain AHA_2987 PF01368 DHH family AHA_2989 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_2990 PF00005 ABC transporter AHA_2990 PF02687 FtsX-like permease family AHA_2990 PF12704 MacB-like periplasmic core domain AHA_2991 PF02321 Outer membrane efflux protein AHA_2992 PF08021 Siderophore-interacting FAD-binding domain AHA_2992 PF04954 Siderophore-interacting protein AHA_2993 PF00793 DAHP synthetase I family AHA_2994 PF00816 H-NS histone family AHA_2997 PF05656 Protein of unknown function (DUF805) AHA_2999 PF01266 FAD dependent oxidoreductase AHA_3000 PF01381 Helix-turn-helix AHA_3000 PF07883 Cupin domain AHA_3001 PF00171 Aldehyde dehydrogenase family AHA_3002 PF00202 Aminotransferase class-III AHA_3003 PF00324 Amino acid permease AHA_3004 PF13520 Amino acid permease AHA_3006 PF02690 Na+/Pi-cotransporter AHA_3007 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AHA_3007 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AHA_3008 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AHA_3009 PF00072 Response regulator receiver domain AHA_3009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_3009 PF00512 His Kinase A (phospho-acceptor) domain AHA_3009 PF01627 Hpt domain AHA_3009 PF00989 PAS fold AHA_3009 PF00497 Bacterial extracellular solute-binding proteins, family 3 AHA_3010 PF01048 Phosphorylase superfamily AHA_3013 PF00005 ABC transporter AHA_3013 PF12848 ABC transporter AHA_3015 PF07969 Amidohydrolase family AHA_3016 PF00291 Pyridoxal-phosphate dependent enzyme AHA_3016 PF14821 Threonine synthase N terminus AHA_3017 PF08544 GHMP kinases C terminal AHA_3017 PF00288 GHMP kinases N terminal domain AHA_3018 PF03447 Homoserine dehydrogenase, NAD binding domain AHA_3018 PF13840 ACT domain AHA_3018 PF01842 ACT domain AHA_3018 PF00742 Homoserine dehydrogenase AHA_3018 PF00696 Amino acid kinase family AHA_3020 PF00588 SpoU rRNA Methylase family AHA_3021 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AHA_3024 PF03737 Aldolase/RraA AHA_3026 PF00072 Response regulator receiver domain AHA_3026 PF00486 Transcriptional regulatory protein, C terminal AHA_3029 PF00005 ABC transporter AHA_3029 PF00664 ABC transporter transmembrane region AHA_3030 PF00005 ABC transporter AHA_3030 PF00664 ABC transporter transmembrane region AHA_3034 PF18389 TrmO C-terminal domain AHA_3034 PF01980 tRNA-methyltransferase O AHA_3035 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AHA_3035 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AHA_3037 PF10431 C-terminal, D2-small domain, of ClpB protein AHA_3037 PF17871 AAA lid domain AHA_3037 PF07724 AAA domain (Cdc48 subfamily) AHA_3037 PF02861 Clp amino terminal domain, pathogenicity island component AHA_3037 PF00004 ATPase family associated with various cellular activities (AAA) AHA_3038 PF00291 Pyridoxal-phosphate dependent enzyme AHA_3039 PF00381 PTS HPr component phosphorylation site AHA_3040 PF02896 PEP-utilising enzyme, TIM barrel domain AHA_3040 PF00391 PEP-utilising enzyme, mobile domain AHA_3040 PF05524 PEP-utilising enzyme, N-terminal AHA_3041 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AHA_3042 PF00990 Diguanylate cyclase, GGDEF domain AHA_3044 PF01292 Prokaryotic cytochrome b561 AHA_3046 PF12320 Type 5 capsule protein repressor C-terminal domain AHA_3046 PF00149 Calcineurin-like phosphoesterase AHA_3048 PF04381 Putative exonuclease, RdgC AHA_3050 PF02254 TrkA-N domain AHA_3050 PF00999 Sodium/hydrogen exchanger family AHA_3051 PF04151 Bacterial pre-peptidase C-terminal domain AHA_3051 PF04389 Peptidase family M28 AHA_3052 PF02887 Pyruvate kinase, alpha/beta domain AHA_3052 PF00224 Pyruvate kinase, barrel domain AHA_3053 PF00924 Mechanosensitive ion channel AHA_3053 PF12795 Mechanosensitive ion channel porin domain AHA_3053 PF12794 Mechanosensitive ion channel inner membrane domain 1 AHA_3055 PF10282 Lactonase, 7-bladed beta-propeller AHA_3056 PF00860 Permease family AHA_3059 PF00390 Malic enzyme, N-terminal domain AHA_3059 PF03949 Malic enzyme, NAD binding domain AHA_3060 PF00072 Response regulator receiver domain AHA_3062 PF13247 4Fe-4S dicluster domain AHA_3063 PF12838 4Fe-4S dicluster domain AHA_3063 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AHA_3063 PF00384 Molybdopterin oxidoreductase AHA_3063 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHA_3063 PF01568 Molydopterin dinucleotide binding domain AHA_3063 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AHA_3063 PF12838 4Fe-4S dicluster domain AHA_3063 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHA_3063 PF00384 Molybdopterin oxidoreductase AHA_3063 PF01568 Molydopterin dinucleotide binding domain AHA_3070 PF02634 FdhD/NarQ family AHA_3071 PF12727 PBP superfamily domain AHA_3071 PF12728 Helix-turn-helix domain AHA_3072 PF00989 PAS fold AHA_3072 PF00512 His Kinase A (phospho-acceptor) domain AHA_3072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_3073 PF00158 Sigma-54 interaction domain AHA_3073 PF00072 Response regulator receiver domain AHA_3073 PF02954 Bacterial regulatory protein, Fis family AHA_3074 PF12849 PBP superfamily domain AHA_3075 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3076 PF00005 ABC transporter AHA_3077 PF12804 MobA-like NTP transferase domain AHA_3078 PF00994 Probable molybdopterin binding domain AHA_3078 PF03454 MoeA C-terminal region (domain IV) AHA_3078 PF03453 MoeA N-terminal region (domain I and II) AHA_3079 PF04632 Fusaric acid resistance protein family AHA_3082 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3082 PF13426 PAS domain AHA_3082 PF08447 PAS fold AHA_3086 PF05114 Protein of unknown function (DUF692) AHA_3088 PF10725 Protein of unknown function (DUF2517) AHA_3092 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_3092 PF00512 His Kinase A (phospho-acceptor) domain AHA_3092 PF09308 LuxQ, periplasmic AHA_3092 PF00072 Response regulator receiver domain AHA_3093 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_3094 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3095 PF12911 N-terminal TM domain of oligopeptide transport permease C AHA_3095 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3096 PF00005 ABC transporter AHA_3096 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_3097 PF00005 ABC transporter AHA_3097 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_3099 PF01869 BadF/BadG/BcrA/BcrD ATPase family AHA_3100 PF02838 Glycosyl hydrolase family 20, domain 2 AHA_3100 PF00728 Glycosyl hydrolase family 20, catalytic domain AHA_3101 PF08447 PAS fold AHA_3101 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3104 PF01396 Topoisomerase DNA binding C4 zinc finger AHA_3104 PF01751 Toprim domain AHA_3104 PF01131 DNA topoisomerase AHA_3104 PF08272 Topoisomerase I zinc-ribbon-like AHA_3105 PF04996 Succinylarginine dihydrolase AHA_3106 PF01343 Peptidase family S49 AHA_3106 PF08496 Peptidase family S49 N-terminal AHA_3107 PF00106 short chain dehydrogenase AHA_3108 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3108 PF03466 LysR substrate binding domain AHA_3109 PF07690 Major Facilitator Superfamily AHA_3110 PF00155 Aminotransferase class I and II AHA_3112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3112 PF03466 LysR substrate binding domain AHA_3113 PF00709 Adenylosuccinate synthetase AHA_3114 PF01161 Phosphatidylethanolamine-binding protein AHA_3116 PF01204 Trehalase AHA_3117 PF00579 tRNA synthetases class I (W and Y) AHA_3118 PF01476 LysM domain AHA_3118 PF08525 Opacity-associated protein A N-terminal motif AHA_3118 PF01551 Peptidase family M23 AHA_3119 PF03702 Anhydro-N-acetylmuramic acid kinase AHA_3120 PF01965 DJ-1/PfpI family AHA_3122 PF01042 Endoribonuclease L-PSP AHA_3123 PF02780 Transketolase, C-terminal domain AHA_3123 PF00456 Transketolase, thiamine diphosphate binding domain AHA_3123 PF02779 Transketolase, pyrimidine binding domain AHA_3124 PF02773 S-adenosylmethionine synthetase, C-terminal domain AHA_3124 PF02772 S-adenosylmethionine synthetase, central domain AHA_3124 PF00438 S-adenosylmethionine synthetase, N-terminal domain AHA_3125 PF10263 SprT-like family AHA_3126 PF04231 Endonuclease I AHA_3127 PF04452 RNA methyltransferase AHA_3128 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AHA_3128 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AHA_3129 PF12729 Four helix bundle sensory module for signal transduction AHA_3129 PF00672 HAMP domain AHA_3129 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3130 PF02622 Uncharacterized ACR, COG1678 AHA_3131 PF03652 Holliday junction resolvase AHA_3132 PF00854 POT family AHA_3133 PF03466 LysR substrate binding domain AHA_3133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3135 PF00144 Beta-lactamase AHA_3136 PF17863 AAA lid domain AHA_3136 PF07726 ATPase family associated with various cellular activities (AAA) AHA_3138 PF11992 Domain of unknown function (DUF3488) AHA_3138 PF01841 Transglutaminase-like superfamily AHA_3138 PF13559 Domain of unknown function (DUF4129) AHA_3139 PF01235 Sodium:alanine symporter family AHA_3140 PF00923 Transaldolase/Fructose-6-phosphate aldolase AHA_3142 PF03167 Uracil DNA glycosylase superfamily AHA_3143 PF01228 Glycine radical AHA_3144 PF00375 Sodium:dicarboxylate symporter family AHA_3145 PF00793 DAHP synthetase I family AHA_3146 PF13369 Transglutaminase-like superfamily AHA_3148 PF13847 Methyltransferase domain AHA_3148 PF17827 PrmC N-terminal domain AHA_3149 PF03462 PCRF domain AHA_3149 PF00472 RF-1 domain AHA_3150 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AHA_3150 PF01488 Shikimate / quinate 5-dehydrogenase AHA_3150 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AHA_3151 PF03550 Outer membrane lipoprotein LolB AHA_3152 PF08544 GHMP kinases C terminal AHA_3152 PF00288 GHMP kinases N terminal domain AHA_3154 PF14572 Phosphoribosyl synthetase-associated domain AHA_3154 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AHA_3155 PF00149 Calcineurin-like phosphoesterase AHA_3155 PF02872 5'-nucleotidase, C-terminal domain AHA_3156 PF01195 Peptidyl-tRNA hydrolase AHA_3157 PF01926 50S ribosome-binding GTPase AHA_3157 PF06071 Protein of unknown function (DUF933) AHA_3166 PF02080 TrkA-C domain AHA_3166 PF03600 Citrate transporter AHA_3167 PF04973 Nicotinamide mononucleotide transporter AHA_3168 PF01048 Phosphorylase superfamily AHA_3170 PF04266 ASCH domain AHA_3172 PF16657 Maltogenic Amylase, C-terminal domain AHA_3172 PF00128 Alpha amylase, catalytic domain AHA_3174 PF10371 Domain of unknown function AHA_3174 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AHA_3174 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AHA_3174 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AHA_3174 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHA_3175 PF07690 Major Facilitator Superfamily AHA_3176 PF13419 Haloacid dehalogenase-like hydrolase AHA_3178 PF00171 Aldehyde dehydrogenase family AHA_3179 PF04958 Arginine N-succinyltransferase beta subunit AHA_3180 PF00202 Aminotransferase class-III AHA_3181 PF00117 Glutamine amidotransferase class-I AHA_3183 PF00579 tRNA synthetases class I (W and Y) AHA_3184 PF13419 Haloacid dehalogenase-like hydrolase AHA_3185 PF00834 Ribulose-phosphate 3 epimerase family AHA_3186 PF02086 D12 class N6 adenine-specific DNA methyltransferase AHA_3188 PF01761 3-dehydroquinate synthase AHA_3189 PF01202 Shikimate kinase AHA_3190 PF07660 Secretin and TonB N terminus short domain AHA_3190 PF03958 Bacterial type II/III secretion system short domain AHA_3190 PF00263 Bacterial type II and III secretion system protein AHA_3190 PF11741 AMIN domain AHA_3192 PF04350 Pilus assembly protein, PilO AHA_3194 PF11104 Type IV pilus assembly protein PilM; AHA_3195 PF00912 Transglycosylase AHA_3195 PF17092 Penicillin-binding protein OB-like domain AHA_3195 PF00905 Penicillin binding protein transpeptidase domain AHA_3196 PF03466 LysR substrate binding domain AHA_3196 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3197 PF02743 Cache domain AHA_3197 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3197 PF00672 HAMP domain AHA_3200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3200 PF03466 LysR substrate binding domain AHA_3203 PF01551 Peptidase family M23 AHA_3203 PF08525 Opacity-associated protein A N-terminal motif AHA_3203 PF01476 LysM domain AHA_3205 PF12794 Mechanosensitive ion channel inner membrane domain 1 AHA_3205 PF12795 Mechanosensitive ion channel porin domain AHA_3205 PF00924 Mechanosensitive ion channel AHA_3206 PF03009 Glycerophosphoryl diester phosphodiesterase family AHA_3207 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3207 PF02743 Cache domain AHA_3207 PF00672 HAMP domain AHA_3208 PF00890 FAD binding domain AHA_3208 PF02910 Fumarate reductase flavoprotein C-term AHA_3209 PF13183 4Fe-4S dicluster domain AHA_3209 PF13085 2Fe-2S iron-sulfur cluster binding domain AHA_3210 PF02300 Fumarate reductase subunit C AHA_3211 PF02313 Fumarate reductase subunit D AHA_3215 PF06224 Winged helix DNA-binding domain AHA_3218 PF00501 AMP-binding enzyme AHA_3222 PF00072 Response regulator receiver domain AHA_3222 PF00486 Transcriptional regulatory protein, C terminal AHA_3223 PF00512 His Kinase A (phospho-acceptor) domain AHA_3223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_3223 PF08521 Two-component sensor kinase N-terminal AHA_3225 PF00478 IMP dehydrogenase / GMP reductase domain AHA_3227 PF01132 Elongation factor P (EF-P) OB domain AHA_3227 PF09285 Elongation factor P, C-terminal AHA_3227 PF08207 Elongation factor P (EF-P) KOW-like domain AHA_3228 PF09997 Predicted membrane protein (DUF2238) AHA_3230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHA_3230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHA_3232 PF08448 PAS fold AHA_3232 PF00990 Diguanylate cyclase, GGDEF domain AHA_3234 PF13419 Haloacid dehalogenase-like hydrolase AHA_3236 PF03466 LysR substrate binding domain AHA_3236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3237 PF05230 MASE2 domain AHA_3237 PF00990 Diguanylate cyclase, GGDEF domain AHA_3238 PF00313 'Cold-shock' DNA-binding domain AHA_3239 PF00857 Isochorismatase family AHA_3240 PF01494 FAD binding domain AHA_3241 PF04055 Radical SAM superfamily AHA_3241 PF01938 TRAM domain AHA_3241 PF00919 Uncharacterized protein family UPF0004 AHA_3242 PF02562 PhoH-like protein AHA_3243 PF02130 Uncharacterized protein family UPF0054 AHA_3244 PF03471 Transporter associated domain AHA_3244 PF00571 CBS domain AHA_3245 PF00795 Carbon-nitrogen hydrolase AHA_3246 PF07295 Zinc-ribbon containing domain AHA_3247 PF00133 tRNA synthetases class I (I, L, M and V) AHA_3247 PF08264 Anticodon-binding domain of tRNA AHA_3247 PF13603 Leucyl-tRNA synthetase, Domain 2 AHA_3251 PF01467 Cytidylyltransferase-like AHA_3253 PF02590 Predicted SPOUT methyltransferase AHA_3254 PF00905 Penicillin binding protein transpeptidase domain AHA_3254 PF03717 Penicillin-binding Protein dimerisation domain AHA_3255 PF01098 Cell cycle protein AHA_3256 PF01098 Cell cycle protein AHA_3257 PF13406 Transglycosylase SLT domain AHA_3258 PF03330 Lytic transglycolase AHA_3258 PF05036 Sporulation related domain AHA_3259 PF00768 D-alanyl-D-alanine carboxypeptidase AHA_3259 PF07943 Penicillin-binding protein 5, C-terminal domain AHA_3260 PF04359 Protein of unknown function (DUF493) AHA_3261 PF03099 Biotin/lipoate A/B protein ligase family AHA_3263 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AHA_3263 PF04055 Radical SAM superfamily AHA_3265 PF06821 Serine hydrolase AHA_3266 PF02508 Rnf-Nqr subunit, membrane protein AHA_3269 PF13411 MerR HTH family regulatory protein AHA_3270 PF02272 DHHA1 domain AHA_3270 PF17768 RecJ OB domain AHA_3270 PF01368 DHH family AHA_3271 PF13098 Thioredoxin-like domain AHA_3271 PF10411 Disulfide bond isomerase protein N-terminus AHA_3272 PF01741 Large-conductance mechanosensitive channel, MscL AHA_3273 PF00589 Phage integrase family AHA_3273 PF02899 Phage integrase, N-terminal SAM-like domain AHA_3274 PF00990 Diguanylate cyclase, GGDEF domain AHA_3275 PF00258 Flavodoxin AHA_3276 PF01523 Putative modulator of DNA gyrase AHA_3277 PF01523 Putative modulator of DNA gyrase AHA_3279 PF03734 L,D-transpeptidase catalytic domain AHA_3279 PF17969 L,D-transpeptidase C-terminal domain AHA_3280 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AHA_3281 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AHA_3285 PF00384 Molybdopterin oxidoreductase AHA_3285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHA_3285 PF01568 Molydopterin dinucleotide binding domain AHA_3286 PF03916 Polysulphide reductase, NrfD AHA_3287 PF13247 4Fe-4S dicluster domain AHA_3288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_3288 PF00512 His Kinase A (phospho-acceptor) domain AHA_3288 PF00989 PAS fold AHA_3289 PF00196 Bacterial regulatory proteins, luxR family AHA_3289 PF00072 Response regulator receiver domain AHA_3290 PF07694 5TMR of 5TMR-LYT AHA_3290 PF06580 Histidine kinase AHA_3291 PF04397 LytTr DNA-binding domain AHA_3291 PF00072 Response regulator receiver domain AHA_3292 PF13722 5TM C-terminal transporter carbon starvation CstA AHA_3292 PF02554 Carbon starvation protein CstA AHA_3293 PF03575 Peptidase family S51 AHA_3294 PF00206 Lyase AHA_3294 PF10415 Fumarase C C-terminus AHA_3296 PF02635 DsrE/DsrF-like family AHA_3297 PF00563 EAL domain AHA_3297 PF00990 Diguanylate cyclase, GGDEF domain AHA_3297 PF03707 Bacterial signalling protein N terminal repeat AHA_3298 PF07690 Major Facilitator Superfamily AHA_3299 PF03725 3' exoribonuclease family, domain 2 AHA_3299 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AHA_3299 PF01138 3' exoribonuclease family, domain 1 AHA_3299 PF00013 KH domain AHA_3299 PF00575 S1 RNA binding domain AHA_3300 PF00312 Ribosomal protein S15 AHA_3301 PF16198 tRNA pseudouridylate synthase B C-terminal domain AHA_3301 PF01509 TruB family pseudouridylate synthase (N terminal domain) AHA_3301 PF09157 Pseudouridine synthase II TruB, C-terminal AHA_3302 PF02033 Ribosome-binding factor A AHA_3303 PF04760 Translation initiation factor IF-2, N-terminal region AHA_3303 PF08364 Bacterial translation initiation factor IF-2 associated region AHA_3303 PF11987 Translation-initiation factor 2 AHA_3303 PF00009 Elongation factor Tu GTP binding domain AHA_3304 PF13184 NusA-like KH domain AHA_3304 PF00575 S1 RNA binding domain AHA_3304 PF08529 NusA N-terminal domain AHA_3305 PF17384 RimP C-terminal SH3 domain AHA_3305 PF02576 RimP N-terminal domain AHA_3308 PF03840 Preprotein translocase SecG subunit AHA_3309 PF00121 Triosephosphate isomerase AHA_3310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AHA_3310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AHA_3310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AHA_3310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AHA_3311 PF00809 Pterin binding enzyme AHA_3312 PF17862 AAA+ lid domain AHA_3312 PF00004 ATPase family associated with various cellular activities (AAA) AHA_3312 PF06480 FtsH Extracellular AHA_3312 PF01434 Peptidase family M41 AHA_3313 PF01728 FtsJ-like methyltransferase AHA_3314 PF01985 CRS1 / YhbY (CRM) domain AHA_3316 PF01272 Transcription elongation factor, GreA/GreB, C-term AHA_3316 PF03449 Transcription elongation factor, N-terminal AHA_3317 PF00691 OmpA family AHA_3317 PF13677 Membrane MotB of proton-channel complex MotA/MotB AHA_3318 PF01618 MotA/TolQ/ExbB proton channel family AHA_3319 PF02609 Exonuclease VII small subunit AHA_3320 PF00348 Polyprenyl synthetase AHA_3321 PF02779 Transketolase, pyrimidine binding domain AHA_3321 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AHA_3321 PF02780 Transketolase, C-terminal domain AHA_3322 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3322 PF12911 N-terminal TM domain of oligopeptide transport permease C AHA_3323 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3324 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_3325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_3325 PF00005 ABC transporter AHA_3326 PF04608 Phosphatidylglycerophosphatase A AHA_3327 PF02769 AIR synthase related protein, C-terminal domain AHA_3327 PF00586 AIR synthase related protein, N-terminal domain AHA_3328 PF01029 NusB family AHA_3329 PF00885 6,7-dimethyl-8-ribityllumazine synthase AHA_3331 PF00925 GTP cyclohydrolase II AHA_3331 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AHA_3332 PF00677 Lumazine binding domain AHA_3333 PF01872 RibD C-terminal domain AHA_3333 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AHA_3334 PF03477 ATP cone domain AHA_3336 PF00464 Serine hydroxymethyltransferase AHA_3338 PF02613 Nitrate reductase delta subunit AHA_3342 PF00990 Diguanylate cyclase, GGDEF domain AHA_3342 PF00563 EAL domain AHA_3342 PF13188 PAS domain AHA_3342 PF03707 Bacterial signalling protein N terminal repeat AHA_3344 PF00501 AMP-binding enzyme AHA_3344 PF13193 AMP-binding enzyme C-terminal domain AHA_3344 PF16177 Acetyl-coenzyme A synthetase N-terminus AHA_3345 PF01220 Dehydroquinase class II AHA_3346 PF00364 Biotin-requiring enzyme AHA_3347 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AHA_3347 PF02785 Biotin carboxylase C-terminal domain AHA_3347 PF00289 Biotin carboxylase, N-terminal domain AHA_3349 PF00474 Sodium:solute symporter family AHA_3350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AHA_3350 PF00367 phosphotransferase system, EIIB AHA_3350 PF02378 Phosphotransferase system, EIIC AHA_3351 PF03466 LysR substrate binding domain AHA_3351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3352 PF08240 Alcohol dehydrogenase GroES-like domain AHA_3352 PF00107 Zinc-binding dehydrogenase AHA_3354 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHA_3354 PF01842 ACT domain AHA_3354 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHA_3355 PF14602 Hexapeptide repeat of succinyl-transferase AHA_3355 PF12464 Maltose acetyltransferase AHA_3356 PF00881 Nitroreductase family AHA_3357 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AHA_3357 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_3358 PF01343 Peptidase family S49 AHA_3361 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AHA_3361 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHA_3362 PF07023 Protein of unknown function (DUF1315) AHA_3363 PF05762 VWA domain containing CoxE-like protein AHA_3364 PF07728 AAA domain (dynein-related subfamily) AHA_3364 PF12592 Protein of unknown function (DUF3763) AHA_3364 PF17868 AAA lid domain AHA_3365 PF17763 Glutaminase/Asparaginase C-terminal domain AHA_3365 PF00710 Asparaginase, N-terminal AHA_3366 PF03616 Sodium/glutamate symporter AHA_3367 PF02743 Cache domain AHA_3367 PF00672 HAMP domain AHA_3367 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3369 PF00152 tRNA synthetases class II (D, K and N) AHA_3369 PF01336 OB-fold nucleic acid binding domain AHA_3370 PF02567 Phenazine biosynthesis-like protein AHA_3371 PF00258 Flavodoxin AHA_3371 PF00667 FAD binding domain AHA_3371 PF00175 Oxidoreductase NAD-binding domain AHA_3372 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHA_3372 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHA_3373 PF01507 Phosphoadenosine phosphosulfate reductase family AHA_3374 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AHA_3375 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3376 PF00005 ABC transporter AHA_3376 PF00571 CBS domain AHA_3377 PF00186 Dihydrofolate reductase AHA_3378 PF12821 Threonine/Serine exporter, ThrE AHA_3379 PF06738 Putative threonine/serine exporter AHA_3381 PF00994 Probable molybdopterin binding domain AHA_3382 PF02801 Beta-ketoacyl synthase, C-terminal domain AHA_3382 PF00109 Beta-ketoacyl synthase, N-terminal domain AHA_3385 PF02801 Beta-ketoacyl synthase, C-terminal domain AHA_3385 PF00109 Beta-ketoacyl synthase, N-terminal domain AHA_3390 PF00221 Aromatic amino acid lyase AHA_3392 PF07977 FabA-like domain AHA_3393 PF00501 AMP-binding enzyme AHA_3393 PF13193 AMP-binding enzyme C-terminal domain AHA_3395 PF00550 Phosphopantetheine attachment site AHA_3396 PF00550 Phosphopantetheine attachment site AHA_3403 PF00034 Cytochrome c AHA_3403 PF03150 Di-haem cytochrome c peroxidase AHA_3404 PF00194 Eukaryotic-type carbonic anhydrase AHA_3405 PF04227 Indigoidine synthase A like protein AHA_3406 PF00294 pfkB family carbohydrate kinase AHA_3407 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_3407 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHA_3407 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHA_3407 PF04324 BFD-like [2Fe-2S] binding domain AHA_3407 PF18267 Rubredoxin NAD+ reductase C-terminal domain AHA_3407 PF13806 Rieske-like [2Fe-2S] domain AHA_3408 PF18267 Rubredoxin NAD+ reductase C-terminal domain AHA_3408 PF13806 Rieske-like [2Fe-2S] domain AHA_3408 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_3408 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHA_3408 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHA_3408 PF04324 BFD-like [2Fe-2S] binding domain AHA_3409 PF00005 ABC transporter AHA_3410 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3411 PF00005 ABC transporter AHA_3413 PF10414 Sirohaem synthase dimerisation region AHA_3413 PF14824 Sirohaem biosynthesis protein central AHA_3413 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHA_3414 PF00384 Molybdopterin oxidoreductase AHA_3414 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AHA_3414 PF04324 BFD-like [2Fe-2S] binding domain AHA_3414 PF01568 Molydopterin dinucleotide binding domain AHA_3418 PF00582 Universal stress protein family AHA_3420 PF00171 Aldehyde dehydrogenase family AHA_3421 PF01472 PUA domain AHA_3421 PF00696 Amino acid kinase family AHA_3422 PF07417 Sigma factor-binding transcriptional regulator Crl AHA_3423 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AHA_3424 PF00156 Phosphoribosyl transferase domain AHA_3426 PF07687 Peptidase dimerisation domain AHA_3426 PF01546 Peptidase family M20/M25/M40 AHA_3428 PF00005 ABC transporter AHA_3428 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_3429 PF00005 ABC transporter AHA_3429 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AHA_3431 PF12911 N-terminal TM domain of oligopeptide transport permease C AHA_3431 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3432 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3433 PF07715 TonB-dependent Receptor Plug Domain AHA_3433 PF00593 TonB dependent receptor AHA_3435 PF01618 MotA/TolQ/ExbB proton channel family AHA_3436 PF01618 MotA/TolQ/ExbB proton channel family AHA_3437 PF02472 Biopolymer transport protein ExbD/TolR AHA_3440 PF06483 Chitinase C AHA_3440 PF00704 Glycosyl hydrolases family 18 AHA_3447 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHA_3448 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3448 PF00672 HAMP domain AHA_3450 PF00313 'Cold-shock' DNA-binding domain AHA_3459 PF00929 Exonuclease AHA_3460 PF03193 RsgA GTPase AHA_3461 PF02666 Phosphatidylserine decarboxylase AHA_3462 PF09905 DNA-binding protein VF530 AHA_3465 PF04224 Protein of unknown function, DUF417 AHA_3466 PF02627 Carboxymuconolactone decarboxylase family AHA_3467 PF12833 Helix-turn-helix domain AHA_3467 PF12852 Cupin AHA_3469 PF03707 Bacterial signalling protein N terminal repeat AHA_3469 PF00563 EAL domain AHA_3469 PF00990 Diguanylate cyclase, GGDEF domain AHA_3470 PF06877 Regulator of ribonuclease activity B AHA_3471 PF00801 PKD domain AHA_3471 PF05547 Immune inhibitor A peptidase M6 AHA_3475 PF00561 alpha/beta hydrolase fold AHA_3476 PF00664 ABC transporter transmembrane region AHA_3476 PF00005 ABC transporter AHA_3477 PF06004 Bacterial protein of unknown function (DUF903) AHA_3478 PF00082 Subtilase family AHA_3478 PF05922 Peptidase inhibitor I9 AHA_3479 PF00581 Rhodanese-like domain AHA_3480 PF04960 Glutaminase AHA_3481 PF04320 Protein with unknown function (DUF469) AHA_3482 PF02390 Putative methyltransferase AHA_3483 PF04389 Peptidase family M28 AHA_3483 PF01483 Proprotein convertase P-domain AHA_3484 PF00155 Aminotransferase class I and II AHA_3485 PF00563 EAL domain AHA_3485 PF12792 CSS motif domain associated with EAL AHA_3486 PF01370 NAD dependent epimerase/dehydratase family AHA_3486 PF08338 Domain of unknown function (DUF1731) AHA_3488 PF00005 ABC transporter AHA_3489 PF13472 GDSL-like Lipase/Acylhydrolase family AHA_3490 PF01584 CheW-like domain AHA_3490 PF00072 Response regulator receiver domain AHA_3492 PF02080 TrkA-C domain AHA_3492 PF06826 Predicted Permease Membrane Region AHA_3493 PF03006 Haemolysin-III related AHA_3494 PF00282 Pyridoxal-dependent decarboxylase conserved domain AHA_3495 PF04279 Intracellular septation protein A AHA_3496 PF03795 YCII-related domain AHA_3497 PF00459 Inositol monophosphatase family AHA_3499 PF00483 Nucleotidyl transferase AHA_3500 PF00854 POT family AHA_3501 PF00072 Response regulator receiver domain AHA_3508 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_3509 PF02321 Outer membrane efflux protein AHA_3510 PF01207 Dihydrouridine synthase (Dus) AHA_3511 PF02954 Bacterial regulatory protein, Fis family AHA_3512 PF01810 LysE type translocator AHA_3517 PF01521 Iron-sulphur cluster biosynthesis AHA_3519 PF00654 Voltage gated chloride channel AHA_3520 PF00202 Aminotransferase class-III AHA_3523 PF01569 PAP2 superfamily AHA_3525 PF11849 Domain of unknown function (DUF3369) AHA_3527 PF00893 Small Multidrug Resistance protein AHA_3528 PF00893 Small Multidrug Resistance protein AHA_3529 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_3530 PF00912 Transglycosylase AHA_3530 PF00905 Penicillin binding protein transpeptidase domain AHA_3530 PF14814 Bifunctional transglycosylase second domain AHA_3531 PF00271 Helicase conserved C-terminal domain AHA_3531 PF04408 Helicase associated domain (HA2) AHA_3531 PF00270 DEAD/DEAH box helicase AHA_3531 PF08482 ATP-dependent helicase C-terminal AHA_3533 PF17746 SfsA N-terminal OB domain AHA_3533 PF03749 Sugar fermentation stimulation protein RE domain AHA_3534 PF01258 Prokaryotic dksA/traR C4-type zinc finger AHA_3535 PF00749 tRNA synthetases class I (E and Q), catalytic domain AHA_3536 PF12627 Probable RNA and SrmB- binding site of polymerase A AHA_3536 PF01743 Poly A polymerase head domain AHA_3536 PF12626 Polymerase A arginine-rich C-terminus AHA_3537 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AHA_3538 PF02548 Ketopantoate hydroxymethyltransferase AHA_3539 PF02569 Pantoate-beta-alanine ligase AHA_3542 PF01869 BadF/BadG/BcrA/BcrD ATPase family AHA_3543 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component AHA_3544 PF01061 ABC-2 type transporter AHA_3545 PF00005 ABC transporter AHA_3546 PF00156 Phosphoribosyl transferase domain AHA_3547 PF00440 Bacterial regulatory proteins, tetR family AHA_3548 PF02441 Flavoprotein AHA_3549 PF01225 Mur ligase family, catalytic domain AHA_3549 PF02875 Mur ligase family, glutamate ligase domain AHA_3549 PF08245 Mur ligase middle domain AHA_3550 PF00719 Inorganic pyrophosphatase AHA_3554 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AHA_3557 PF00005 ABC transporter AHA_3561 PF08447 PAS fold AHA_3561 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3565 PF02080 TrkA-C domain AHA_3565 PF03600 Citrate transporter AHA_3566 PF00009 Elongation factor Tu GTP binding domain AHA_3567 PF01507 Phosphoadenosine phosphosulfate reductase family AHA_3568 PF10414 Sirohaem synthase dimerisation region AHA_3568 PF14824 Sirohaem biosynthesis protein central AHA_3568 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHA_3569 PF01145 SPFH domain / Band 7 family AHA_3569 PF16200 C-terminal region of band_7 AHA_3570 PF01957 NfeD-like C-terminal, partner-binding AHA_3571 PF01380 SIS domain AHA_3571 PF00571 CBS domain AHA_3572 PF12848 ABC transporter AHA_3572 PF00005 ABC transporter AHA_3574 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AHA_3575 PF03466 LysR substrate binding domain AHA_3575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3576 PF02525 Flavodoxin-like fold AHA_3580 PF17191 RecG wedge domain AHA_3580 PF00270 DEAD/DEAH box helicase AHA_3580 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AHA_3581 PF00561 alpha/beta hydrolase fold AHA_3583 PF00474 Sodium:solute symporter family AHA_3584 PF17969 L,D-transpeptidase C-terminal domain AHA_3584 PF03734 L,D-transpeptidase catalytic domain AHA_3585 PF00924 Mechanosensitive ion channel AHA_3586 PF00871 Acetokinase family AHA_3587 PF04074 YhcH/YjgK/YiaL AHA_3589 PF07731 Multicopper oxidase AHA_3589 PF07732 Multicopper oxidase AHA_3589 PF00394 Multicopper oxidase AHA_3590 PF01177 Asp/Glu/Hydantoin racemase AHA_3591 PF01810 LysE type translocator AHA_3592 PF00392 Bacterial regulatory proteins, gntR family AHA_3592 PF00155 Aminotransferase class I and II AHA_3598 PF00209 Sodium:neurotransmitter symporter family AHA_3600 PF00209 Sodium:neurotransmitter symporter family AHA_3604 PF07690 Major Facilitator Superfamily AHA_3606 PF01037 Lrp/AsnC ligand binding domain AHA_3609 PF01047 MarR family AHA_3610 PF02566 OsmC-like protein AHA_3611 PF16884 N-terminal domain of oxidoreductase AHA_3611 PF00107 Zinc-binding dehydrogenase AHA_3612 PF00293 NUDIX domain AHA_3614 PF01641 SelR domain AHA_3615 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHA_3615 PF00128 Alpha amylase, catalytic domain AHA_3616 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AHA_3616 PF02806 Alpha amylase, C-terminal all-beta domain AHA_3616 PF00128 Alpha amylase, catalytic domain AHA_3617 PF02446 4-alpha-glucanotransferase AHA_3618 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHA_3618 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AHA_3619 PF01263 Aldose 1-epimerase AHA_3620 PF02445 Quinolinate synthetase A protein AHA_3621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3621 PF00672 HAMP domain AHA_3636 PF16331 TolA binding protein trimerisation AHA_3636 PF13174 Tetratricopeptide repeat AHA_3637 PF00691 OmpA family AHA_3638 PF04052 TolB amino-terminal domain AHA_3638 PF07676 WD40-like Beta Propeller Repeat AHA_3640 PF02472 Biopolymer transport protein ExbD/TolR AHA_3641 PF01618 MotA/TolQ/ExbB proton channel family AHA_3642 PF03061 Thioesterase superfamily AHA_3643 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) AHA_3644 PF08173 Membrane bound YbgT-like protein AHA_3645 PF02322 Cytochrome bd terminal oxidase subunit II AHA_3646 PF01654 Cytochrome bd terminal oxidase subunit I AHA_3647 PF05496 Holliday junction DNA helicase RuvB P-loop domain AHA_3647 PF05491 RuvB C-terminal winged helix domain AHA_3647 PF17864 RuvB AAA lid domain AHA_3648 PF07499 RuvA, C-terminal domain AHA_3648 PF01330 RuvA N terminal domain AHA_3649 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3649 PF00672 HAMP domain AHA_3650 PF04073 Aminoacyl-tRNA editing domain AHA_3650 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AHA_3650 PF03129 Anticodon binding domain AHA_3651 PF00106 short chain dehydrogenase AHA_3654 PF00378 Enoyl-CoA hydratase/isomerase AHA_3655 PF10952 Protein of unknown function (DUF2753) AHA_3656 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_3658 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AHA_3661 PF02594 Uncharacterised ACR, YggU family COG1872 AHA_3662 PF02325 YGGT family AHA_3663 PF03807 NADP oxidoreductase coenzyme F420-dependent AHA_3663 PF14748 Pyrroline-5-carboxylate reductase dimerisation AHA_3664 PF01168 Alanine racemase, N-terminal domain AHA_3665 PF00437 Type II/IV secretion system protein AHA_3666 PF00437 Type II/IV secretion system protein AHA_3667 PF03883 Peroxide stress protein YaaA AHA_3668 PF00270 DEAD/DEAH box helicase AHA_3668 PF00271 Helicase conserved C-terminal domain AHA_3669 PF05175 Methyltransferase small domain AHA_3670 PF05525 Branched-chain amino acid transport protein AHA_3671 PF05525 Branched-chain amino acid transport protein AHA_3674 PF01475 Ferric uptake regulator family AHA_3675 PF01207 Dihydrouridine synthase (Dus) AHA_3678 PF00216 Bacterial DNA-binding protein AHA_3679 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AHA_3680 PF07238 PilZ domain AHA_3681 PF18073 Rubredoxin metal binding domain AHA_3685 PF18429 Domain of unknown function (DUF5609) AHA_3686 PF08448 PAS fold AHA_3686 PF08447 PAS fold AHA_3686 PF05231 MASE1 AHA_3686 PF00990 Diguanylate cyclase, GGDEF domain AHA_3686 PF13426 PAS domain AHA_3686 PF00563 EAL domain AHA_3687 PF01048 Phosphorylase superfamily AHA_3688 PF01676 Metalloenzyme superfamily AHA_3689 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AHA_3689 PF00591 Glycosyl transferase family, a/b domain AHA_3689 PF02885 Glycosyl transferase family, helical bundle domain AHA_3690 PF01791 DeoC/LacD family aldolase AHA_3691 PF07662 Na+ dependent nucleoside transporter C-terminus AHA_3691 PF01773 Na+ dependent nucleoside transporter N-terminus AHA_3691 PF07670 Nucleoside recognition AHA_3692 PF01026 TatD related DNase AHA_3693 PF07963 Prokaryotic N-terminal methylation motif AHA_3694 PF05958 tRNA (Uracil-5-)-methyltransferase AHA_3694 PF01938 TRAM domain AHA_3695 PF00909 Ammonium Transporter Family AHA_3698 PF03739 Lipopolysaccharide export system permease LptF/LptG AHA_3699 PF03739 Lipopolysaccharide export system permease LptF/LptG AHA_3700 PF02789 Cytosol aminopeptidase family, N-terminal domain AHA_3700 PF00883 Cytosol aminopeptidase family, catalytic domain AHA_3701 PF04364 DNA polymerase III chi subunit, HolC AHA_3702 PF00133 tRNA synthetases class I (I, L, M and V) AHA_3702 PF10458 Valyl tRNA synthetase tRNA binding arm AHA_3702 PF08264 Anticodon-binding domain of tRNA AHA_3703 PF03471 Transporter associated domain AHA_3703 PF00571 CBS domain AHA_3703 PF01595 Cyclin M transmembrane N-terminal domain AHA_3704 PF09335 SNARE associated Golgi protein AHA_3705 PF00768 D-alanyl-D-alanine carboxypeptidase AHA_3712 PF02599 Global regulator protein family AHA_3713 PF13840 ACT domain AHA_3713 PF00696 Amino acid kinase family AHA_3713 PF01842 ACT domain AHA_3714 PF02272 DHHA1 domain AHA_3714 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AHA_3714 PF01411 tRNA synthetases class II (A) AHA_3715 PF02631 RecX family AHA_3716 PF00154 recA bacterial DNA recombination protein AHA_3717 PF02464 Competence-damaged protein AHA_3718 PF05190 MutS family domain IV AHA_3718 PF05192 MutS domain III AHA_3718 PF05188 MutS domain II AHA_3718 PF01624 MutS domain I AHA_3718 PF00488 MutS domain V AHA_3719 PF02028 BCCT, betaine/carnitine/choline family transporter AHA_3722 PF04222 Protein of unknown function (DUF416) AHA_3723 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHA_3724 PF01476 LysM domain AHA_3724 PF08525 Opacity-associated protein A N-terminal motif AHA_3724 PF01551 Peptidase family M23 AHA_3728 PF01297 Zinc-uptake complex component A periplasmic AHA_3729 PF00005 ABC transporter AHA_3730 PF00950 ABC 3 transport family AHA_3731 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3731 PF03466 LysR substrate binding domain AHA_3732 PF00892 EamA-like transporter family AHA_3733 PF03167 Uracil DNA glycosylase superfamily AHA_3735 PF00892 EamA-like transporter family AHA_3736 PF01541 GIY-YIG catalytic domain AHA_3739 PF04012 PspA/IM30 family AHA_3740 PF01553 Acyltransferase AHA_3745 PF00578 AhpC/TSA family AHA_3746 PF00684 DnaJ central domain AHA_3746 PF00226 DnaJ domain AHA_3746 PF01556 DnaJ C terminal domain AHA_3752 PF07690 Major Facilitator Superfamily AHA_3753 PF03466 LysR substrate binding domain AHA_3753 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3755 PF00521 DNA gyrase/topoisomerase IV, subunit A AHA_3755 PF03989 DNA gyrase C-terminal domain, beta-propeller AHA_3756 PF00204 DNA gyrase B AHA_3756 PF00986 DNA gyrase B subunit, carboxyl terminus AHA_3756 PF01751 Toprim domain AHA_3756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_3757 PF04632 Fusaric acid resistance protein family AHA_3758 PF00529 HlyD membrane-fusion protein of T1SS AHA_3758 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AHA_3759 PF07869 Protein of unknown function (DUF1656) AHA_3761 PF00293 NUDIX domain AHA_3762 PF05728 Uncharacterised protein family (UPF0227) AHA_3763 PF00149 Calcineurin-like phosphoesterase AHA_3764 PF06853 Protein of unknown function (DUF1249) AHA_3765 PF00293 NUDIX domain AHA_3766 PF02321 Outer membrane efflux protein AHA_3767 PF00294 pfkB family carbohydrate kinase AHA_3767 PF01467 Cytidylyltransferase-like AHA_3768 PF03279 Bacterial lipid A biosynthesis acyltransferase AHA_3771 PF01865 Protein of unknown function DUF47 AHA_3772 PF01384 Phosphate transporter family AHA_3773 PF04073 Aminoacyl-tRNA editing domain AHA_3774 PF07350 Protein of unknown function (DUF1479) AHA_3778 PF00392 Bacterial regulatory proteins, gntR family AHA_3778 PF00155 Aminotransferase class I and II AHA_3779 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3779 PF03466 LysR substrate binding domain AHA_3780 PF03788 LrgA family AHA_3781 PF04172 LrgB-like family AHA_3784 PF01966 HD domain AHA_3784 PF01743 Poly A polymerase head domain AHA_3784 PF12627 Probable RNA and SrmB- binding site of polymerase A AHA_3785 PF13401 AAA domain AHA_3785 PF01471 Putative peptidoglycan binding domain AHA_3786 PF16537 Type II secretion system protein B AHA_3787 PF10576 Iron-sulfur binding domain of endonuclease III AHA_3787 PF00730 HhH-GPD superfamily base excision DNA repair protein AHA_3787 PF00633 Helix-hairpin-helix motif AHA_3787 PF14815 NUDIX domain AHA_3788 PF04362 Bacterial Fe(2+) trafficking AHA_3789 PF01464 Transglycosylase SLT domain AHA_3789 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AHA_3790 PF04076 Bacterial OB fold (BOF) protein AHA_3791 PF00657 GDSL-like Lipase/Acylhydrolase AHA_3793 PF00691 OmpA family AHA_3793 PF01389 OmpA-like transmembrane domain AHA_3794 PF03886 ABC-type transport auxiliary lipoprotein component AHA_3795 PF02470 MlaD protein AHA_3796 PF04403 Paraquat-inducible protein A AHA_3797 PF17209 Hfq protein AHA_3798 PF13419 Haloacid dehalogenase-like hydrolase AHA_3800 PF00360 Phytochrome region AHA_3800 PF00563 EAL domain AHA_3800 PF00990 Diguanylate cyclase, GGDEF domain AHA_3800 PF01590 GAF domain AHA_3801 PF00701 Dihydrodipicolinate synthetase family AHA_3802 PF05175 Methyltransferase small domain AHA_3802 PF08468 Methyltransferase small domain N-terminal AHA_3803 PF00483 Nucleotidyl transferase AHA_3804 PF08323 Starch synthase catalytic domain AHA_3804 PF00534 Glycosyl transferases group 1 AHA_3812 PF03553 Na+/H+ antiporter family AHA_3813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3813 PF03466 LysR substrate binding domain AHA_3814 PF13416 Bacterial extracellular solute-binding protein AHA_3815 PF08402 TOBE domain AHA_3815 PF00005 ABC transporter AHA_3816 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3817 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3818 PF00171 Aldehyde dehydrogenase family AHA_3820 PF00892 EamA-like transporter family AHA_3821 PF01037 Lrp/AsnC ligand binding domain AHA_3822 PF14602 Hexapeptide repeat of succinyl-transferase AHA_3822 PF12464 Maltose acetyltransferase AHA_3823 PF00128 Alpha amylase, catalytic domain AHA_3823 PF11941 Domain of unknown function (DUF3459) AHA_3824 PF02378 Phosphotransferase system, EIIC AHA_3824 PF00367 phosphotransferase system, EIIB AHA_3825 PF00356 Bacterial regulatory proteins, lacI family AHA_3828 PF00710 Asparaginase, N-terminal AHA_3828 PF17763 Glutaminase/Asparaginase C-terminal domain AHA_3831 PF02142 MGS-like domain AHA_3833 PF00210 Ferritin-like domain AHA_3837 PF05127 Helicase AHA_3837 PF17176 tRNA-binding domain AHA_3837 PF13718 GNAT acetyltransferase 2 AHA_3837 PF08351 Domain of unknown function (DUF1726) AHA_3838 PF01584 CheW-like domain AHA_3838 PF00072 Response regulator receiver domain AHA_3839 PF07670 Nucleoside recognition AHA_3846 PF02660 Glycerol-3-phosphate acyltransferase AHA_3847 PF02152 Dihydroneopterin aldolase AHA_3848 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AHA_3850 PF07690 Major Facilitator Superfamily AHA_3851 PF02492 CobW/HypB/UreG, nucleotide-binding domain AHA_3851 PF07683 Cobalamin synthesis protein cobW C-terminal domain AHA_3852 PF04030 D-arabinono-1,4-lactone oxidase AHA_3852 PF01565 FAD binding domain AHA_3853 PF01810 LysE type translocator AHA_3854 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3854 PF03466 LysR substrate binding domain AHA_3855 PF00563 EAL domain AHA_3855 PF12792 CSS motif domain associated with EAL AHA_3856 PF11791 Aconitate B N-terminal domain AHA_3856 PF00330 Aconitase family (aconitate hydratase) AHA_3856 PF06434 Aconitate hydratase 2 N-terminus AHA_3857 PF01734 Patatin-like phospholipase AHA_3858 PF12729 Four helix bundle sensory module for signal transduction AHA_3858 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3858 PF00672 HAMP domain AHA_3859 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3859 PF12729 Four helix bundle sensory module for signal transduction AHA_3859 PF00672 HAMP domain AHA_3861 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_3861 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHA_3862 PF02817 e3 binding domain AHA_3862 PF00364 Biotin-requiring enzyme AHA_3862 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AHA_3863 PF00456 Transketolase, thiamine diphosphate binding domain AHA_3863 PF17831 Pyruvate dehydrogenase E1 component middle domain AHA_3864 PF07729 FCD domain AHA_3864 PF00392 Bacterial regulatory proteins, gntR family AHA_3865 PF01510 N-acetylmuramoyl-L-alanine amidase AHA_3867 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AHA_3867 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AHA_3868 PF07963 Prokaryotic N-terminal methylation motif AHA_3869 PF00437 Type II/IV secretion system protein AHA_3869 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AHA_3870 PF00482 Type II secretion system (T2SS), protein F AHA_3871 PF06750 Bacterial Peptidase A24 N-terminal domain AHA_3871 PF01478 Type IV leader peptidase family AHA_3872 PF01121 Dephospho-CoA kinase AHA_3873 PF07072 Cell division protein AHA_3874 PF03884 DNA gyrase inhibitor YacG AHA_3875 PF00293 NUDIX domain AHA_3877 PF02810 SEC-C motif AHA_3877 PF07517 SecA DEAD-like domain AHA_3877 PF01043 SecA preprotein cross-linking domain AHA_3877 PF07516 SecA Wing and Scaffold domain AHA_3879 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AHA_3880 PF00091 Tubulin/FtsZ family, GTPase domain AHA_3880 PF12327 FtsZ family, C-terminal domain AHA_3881 PF02491 SHS2 domain inserted in FTSA AHA_3882 PF08478 POTRA domain, FtsQ-type AHA_3882 PF03799 Cell division protein FtsQ AHA_3883 PF01225 Mur ligase family, catalytic domain AHA_3883 PF08245 Mur ligase middle domain AHA_3883 PF02875 Mur ligase family, glutamate ligase domain AHA_3884 PF03033 Glycosyltransferase family 28 N-terminal domain AHA_3884 PF04101 Glycosyltransferase family 28 C-terminal domain AHA_3885 PF01098 Cell cycle protein AHA_3886 PF08245 Mur ligase middle domain AHA_3886 PF02875 Mur ligase family, glutamate ligase domain AHA_3887 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AHA_3887 PF00953 Glycosyl transferase family 4 AHA_3888 PF08245 Mur ligase middle domain AHA_3888 PF02875 Mur ligase family, glutamate ligase domain AHA_3888 PF01225 Mur ligase family, catalytic domain AHA_3889 PF08245 Mur ligase middle domain AHA_3889 PF01225 Mur ligase family, catalytic domain AHA_3889 PF02875 Mur ligase family, glutamate ligase domain AHA_3890 PF00905 Penicillin binding protein transpeptidase domain AHA_3890 PF03717 Penicillin-binding Protein dimerisation domain AHA_3891 PF04999 Cell division protein FtsL AHA_3892 PF01795 MraW methylase family AHA_3893 PF02381 MraZ protein, putative antitoxin-like AHA_3894 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHA_3895 PF04348 LppC putative lipoprotein AHA_3896 PF02021 Uncharacterised protein family UPF0102 AHA_3897 PF13580 SIS domain AHA_3898 PF04972 BON domain AHA_3899 PF04386 Stringent starvation protein B AHA_3900 PF02798 Glutathione S-transferase, N-terminal domain AHA_3900 PF00043 Glutathione S-transferase, C-terminal domain AHA_3901 PF02167 Cytochrome C1 family AHA_3902 PF00032 Cytochrome b(C-terminal)/b6/petD AHA_3902 PF00033 Cytochrome b/b6/petB AHA_3903 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AHA_3903 PF00355 Rieske [2Fe-2S] domain AHA_3904 PF00380 Ribosomal protein S9/S16 AHA_3905 PF00572 Ribosomal protein L13 AHA_3906 PF03969 AFG1-like ATPase AHA_3908 PF00595 PDZ domain AHA_3908 PF13180 PDZ domain AHA_3909 PF13180 PDZ domain AHA_3915 PF01979 Amidohydrolase family AHA_3916 PF03841 L-seryl-tRNA selenium transferase AHA_3917 PF07071 KDGP aldolase AHA_3918 PF08279 HTH domain AHA_3918 PF05043 Mga helix-turn-helix domain AHA_3918 PF00874 PRD domain AHA_3918 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHA_3919 PF00381 PTS HPr component phosphorylation site AHA_3920 PF03668 P-loop ATPase protein family AHA_3921 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AHA_3922 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AHA_3923 PF00309 Sigma-54 factor, Activator interacting domain (AID) AHA_3923 PF04963 Sigma-54 factor, core binding domain AHA_3923 PF04552 Sigma-54, DNA binding domain AHA_3924 PF12399 Branched-chain amino acid ATP-binding cassette transporter AHA_3924 PF00005 ABC transporter AHA_3925 PF03968 OstA-like protein AHA_3926 PF06835 Lipopolysaccharide-assembly, LptC-related AHA_3928 PF00571 CBS domain AHA_3928 PF01380 SIS domain AHA_3929 PF00005 ABC transporter AHA_3930 PF02405 Permease MlaE AHA_3931 PF02470 MlaD protein AHA_3932 PF05494 MlaC protein AHA_3934 PF01722 BolA-like protein AHA_3935 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AHA_3936 PF01523 Putative modulator of DNA gyrase AHA_3937 PF04751 Protein of unknown function (DUF615) AHA_3939 PF04363 Protein of unknown function (DUF496) AHA_3946 PF07883 Cupin domain AHA_3946 PF01381 Helix-turn-helix AHA_3947 PF03594 Benzoate membrane transport protein AHA_3949 PF02219 Methylenetetrahydrofolate reductase AHA_3952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_3952 PF00672 HAMP domain AHA_3953 PF03922 OmpW family AHA_3954 PF00990 Diguanylate cyclase, GGDEF domain AHA_3955 PF00005 ABC transporter AHA_3955 PF17755 UvrA DNA-binding domain AHA_3955 PF17760 UvrA interaction domain AHA_3956 PF00196 Bacterial regulatory proteins, luxR family AHA_3957 PF00436 Single-strand binding protein family AHA_3960 PF16916 Dimerisation domain of Zinc Transporter AHA_3960 PF01545 Cation efflux family AHA_3962 PF00313 'Cold-shock' DNA-binding domain AHA_3963 PF07715 TonB-dependent Receptor Plug Domain AHA_3963 PF00593 TonB dependent receptor AHA_3964 PF00360 Phytochrome region AHA_3964 PF01590 GAF domain AHA_3964 PF00990 Diguanylate cyclase, GGDEF domain AHA_3964 PF00563 EAL domain AHA_3965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_3965 PF00672 HAMP domain AHA_3965 PF00512 His Kinase A (phospho-acceptor) domain AHA_3966 PF00486 Transcriptional regulatory protein, C terminal AHA_3966 PF00072 Response regulator receiver domain AHA_3970 PF00990 Diguanylate cyclase, GGDEF domain AHA_3972 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AHA_3974 PF13538 UvrD-like helicase C-terminal domain AHA_3975 PF12705 PD-(D/E)XK nuclease superfamily AHA_3975 PF00580 UvrD/REP helicase N-terminal domain AHA_3975 PF13361 UvrD-like helicase C-terminal domain AHA_3976 PF17946 RecC C-terminal domain AHA_3977 PF07681 DoxX AHA_3978 PF17954 Quercetinase C-terminal cupin domain AHA_3978 PF02678 Pirin AHA_3980 PF03466 LysR substrate binding domain AHA_3980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_3982 PF07702 UTRA domain AHA_3982 PF00392 Bacterial regulatory proteins, gntR family AHA_3985 PF00528 Binding-protein-dependent transport system inner membrane component AHA_3987 PF08402 TOBE domain AHA_3987 PF00005 ABC transporter AHA_3989 PF00990 Diguanylate cyclase, GGDEF domain AHA_3993 PF00583 Acetyltransferase (GNAT) family AHA_3994 PF06628 Catalase-related immune-responsive AHA_3994 PF00199 Catalase AHA_3999 PF00293 NUDIX domain AHA_4000 PF01594 AI-2E family transporter AHA_4002 PF04371 Porphyromonas-type peptidyl-arginine deiminase AHA_4003 PF03466 LysR substrate binding domain AHA_4003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_4004 PF00989 PAS fold AHA_4004 PF02954 Bacterial regulatory protein, Fis family AHA_4004 PF00158 Sigma-54 interaction domain AHA_4005 PF00465 Iron-containing alcohol dehydrogenase AHA_4006 PF00381 PTS HPr component phosphorylation site AHA_4006 PF05524 PEP-utilising enzyme, N-terminal AHA_4006 PF00391 PEP-utilising enzyme, mobile domain AHA_4006 PF03610 PTS system fructose IIA component AHA_4007 PF02734 DAK2 domain AHA_4008 PF02733 Dak1 domain AHA_4009 PF00860 Permease family AHA_4018 PF00009 Elongation factor Tu GTP binding domain AHA_4018 PF03143 Elongation factor Tu C-terminal domain AHA_4018 PF03144 Elongation factor Tu domain 2 AHA_4019 PF03764 Elongation factor G, domain IV AHA_4019 PF03144 Elongation factor Tu domain 2 AHA_4019 PF00009 Elongation factor Tu GTP binding domain AHA_4019 PF14492 Elongation Factor G, domain II AHA_4019 PF00679 Elongation factor G C-terminus AHA_4020 PF00177 Ribosomal protein S7p/S5e AHA_4021 PF00164 Ribosomal protein S12/S23 AHA_4022 PF04077 DsrH like protein AHA_4023 PF02635 DsrE/DsrF-like family AHA_4024 PF02635 DsrE/DsrF-like family AHA_4025 PF01042 Endoribonuclease L-PSP AHA_4026 PF13309 HTH domain AHA_4026 PF08348 YheO-like PAS domain AHA_4027 PF04998 RNA polymerase Rpb1, domain 5 AHA_4027 PF05000 RNA polymerase Rpb1, domain 4 AHA_4027 PF04983 RNA polymerase Rpb1, domain 3 AHA_4027 PF00623 RNA polymerase Rpb1, domain 2 AHA_4027 PF04997 RNA polymerase Rpb1, domain 1 AHA_4028 PF10385 RNA polymerase beta subunit external 1 domain AHA_4028 PF00562 RNA polymerase Rpb2, domain 6 AHA_4028 PF04565 RNA polymerase Rpb2, domain 3 AHA_4028 PF04560 RNA polymerase Rpb2, domain 7 AHA_4028 PF04561 RNA polymerase Rpb2, domain 2 AHA_4028 PF04563 RNA polymerase beta subunit AHA_4029 PF16320 Ribosomal protein L7/L12 dimerisation domain AHA_4029 PF00542 Ribosomal protein L7/L12 C-terminal domain AHA_4030 PF00466 Ribosomal protein L10 AHA_4031 PF00687 Ribosomal protein L1p/L10e family AHA_4032 PF00298 Ribosomal protein L11, RNA binding domain AHA_4032 PF03946 Ribosomal protein L11, N-terminal domain AHA_4033 PF02357 Transcription termination factor nusG AHA_4033 PF00467 KOW motif AHA_4034 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AHA_4036 PF03143 Elongation factor Tu C-terminal domain AHA_4036 PF03144 Elongation factor Tu domain 2 AHA_4036 PF00009 Elongation factor Tu GTP binding domain AHA_4039 PF00485 Phosphoribulokinase / Uridine kinase family AHA_4040 PF02237 Biotin protein ligase C terminal domain AHA_4040 PF03099 Biotin/lipoate A/B protein ligase family AHA_4040 PF08279 HTH domain AHA_4041 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AHA_4041 PF01565 FAD binding domain AHA_4042 PF02254 TrkA-N domain AHA_4042 PF02080 TrkA-C domain AHA_4043 PF02386 Cation transport protein AHA_4044 PF12833 Helix-turn-helix domain AHA_4044 PF12852 Cupin AHA_4047 PF01751 Toprim domain AHA_4047 PF01131 DNA topoisomerase AHA_4048 PF03264 NapC/NirT cytochrome c family, N-terminal region AHA_4049 PF01568 Molydopterin dinucleotide binding domain AHA_4049 PF00384 Molybdopterin oxidoreductase AHA_4049 PF18364 Molybdopterin oxidoreductase N-terminal domain AHA_4051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_4052 PF00072 Response regulator receiver domain AHA_4052 PF00486 Transcriptional regulatory protein, C terminal AHA_4055 PF01794 Ferric reductase like transmembrane component AHA_4056 PF00174 Oxidoreductase molybdopterin binding domain AHA_4058 PF06496 Protein of unknown function (DUF1097) AHA_4059 PF00072 Response regulator receiver domain AHA_4059 PF00158 Sigma-54 interaction domain AHA_4061 PF00512 His Kinase A (phospho-acceptor) domain AHA_4061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_4064 PF10063 Uncharacterized integral membrane protein (DUF2301) AHA_4065 PF00478 IMP dehydrogenase / GMP reductase domain AHA_4065 PF00571 CBS domain AHA_4067 PF01037 Lrp/AsnC ligand binding domain AHA_4068 PF03590 Aspartate-ammonia ligase AHA_4071 PF10431 C-terminal, D2-small domain, of ClpB protein AHA_4071 PF17871 AAA lid domain AHA_4071 PF02861 Clp amino terminal domain, pathogenicity island component AHA_4071 PF07724 AAA domain (Cdc48 subfamily) AHA_4071 PF00004 ATPase family associated with various cellular activities (AAA) AHA_4072 PF02578 Multi-copper polyphenol oxidoreductase laccase AHA_4073 PF00849 RNA pseudouridylate synthase AHA_4073 PF01479 S4 domain AHA_4074 PF13525 Outer membrane lipoprotein AHA_4075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AHA_4075 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_4076 PF00375 Sodium:dicarboxylate symporter family AHA_4077 PF03313 Serine dehydratase alpha chain AHA_4079 PF02233 NAD(P) transhydrogenase beta subunit AHA_4080 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AHA_4080 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AHA_4080 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AHA_4081 PF00465 Iron-containing alcohol dehydrogenase AHA_4082 PF06719 AraC-type transcriptional regulator N-terminus AHA_4082 PF12833 Helix-turn-helix domain AHA_4083 PF00672 HAMP domain AHA_4083 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_4083 PF02743 Cache domain AHA_4084 PF02666 Phosphatidylserine decarboxylase AHA_4087 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHA_4087 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHA_4088 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AHA_4088 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AHA_4089 PF02863 Arginine repressor, C-terminal domain AHA_4089 PF01316 Arginine repressor, DNA binding domain AHA_4090 PF03606 C4-dicarboxylate anaerobic carrier AHA_4091 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AHA_4091 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AHA_4092 PF00696 Amino acid kinase family AHA_4097 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_4097 PF00672 HAMP domain AHA_4097 PF02743 Cache domain AHA_4098 PF02653 Branched-chain amino acid transport system / permease component AHA_4099 PF00005 ABC transporter AHA_4100 PF13407 Periplasmic binding protein domain AHA_4101 PF02929 Beta galactosidase small chain AHA_4101 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AHA_4101 PF02837 Glycosyl hydrolases family 2, sugar binding domain AHA_4101 PF00703 Glycosyl hydrolases family 2 AHA_4101 PF16353 Domain of unknown function(DUF4981) AHA_4102 PF00356 Bacterial regulatory proteins, lacI family AHA_4103 PF16363 GDP-mannose 4,6 dehydratase AHA_4104 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AHA_4104 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AHA_4105 PF10509 Galactokinase galactose-binding signature AHA_4105 PF08544 GHMP kinases C terminal AHA_4105 PF00288 GHMP kinases N terminal domain AHA_4106 PF01263 Aldose 1-epimerase AHA_4107 PF00248 Aldo/keto reductase family AHA_4108 PF02673 Bacitracin resistance protein BacA AHA_4109 PF12973 ChrR Cupin-like domain AHA_4110 PF04545 Sigma-70, region 4 AHA_4110 PF04542 Sigma-70 region 2 AHA_4112 PF00750 tRNA synthetases class I (R) AHA_4112 PF03485 Arginyl tRNA synthetase N terminal domain AHA_4112 PF05746 DALR anticodon binding domain AHA_4114 PF00227 Proteasome subunit AHA_4115 PF07724 AAA domain (Cdc48 subfamily) AHA_4115 PF10431 C-terminal, D2-small domain, of ClpB protein AHA_4115 PF00004 ATPase family associated with various cellular activities (AAA) AHA_4116 PF07690 Major Facilitator Superfamily AHA_4117 PF03466 LysR substrate binding domain AHA_4117 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AHA_4118 PF04324 BFD-like [2Fe-2S] binding domain AHA_4118 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AHA_4118 PF07992 Pyridine nucleotide-disulphide oxidoreductase AHA_4118 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AHA_4118 PF18267 Rubredoxin NAD+ reductase C-terminal domain AHA_4119 PF13806 Rieske-like [2Fe-2S] domain AHA_4120 PF01226 Formate/nitrite transporter AHA_4121 PF10414 Sirohaem synthase dimerisation region AHA_4121 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AHA_4121 PF14824 Sirohaem biosynthesis protein central AHA_4122 PF00571 CBS domain AHA_4122 PF01769 Divalent cation transporter AHA_4122 PF03448 MgtE intracellular N domain AHA_4123 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AHA_4123 PF00672 HAMP domain AHA_4124 PF03737 Aldolase/RraA AHA_4125 PF02592 Putative vitamin uptake transporter AHA_4127 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AHA_4128 PF00034 Cytochrome c AHA_4129 PF00271 Helicase conserved C-terminal domain AHA_4129 PF16124 RecQ zinc-binding AHA_4129 PF09382 RQC domain AHA_4129 PF00570 HRDC domain AHA_4129 PF00270 DEAD/DEAH box helicase AHA_4130 PF03061 Thioesterase superfamily AHA_4133 PF03475 3-alpha domain AHA_4133 PF03473 MOSC domain AHA_4134 PF00528 Binding-protein-dependent transport system inner membrane component AHA_4135 PF00528 Binding-protein-dependent transport system inner membrane component AHA_4136 PF08402 TOBE domain AHA_4136 PF00005 ABC transporter AHA_4137 PF13416 Bacterial extracellular solute-binding protein AHA_4138 PF13416 Bacterial extracellular solute-binding protein AHA_4139 PF00202 Aminotransferase class-III AHA_4140 PF00120 Glutamine synthetase, catalytic domain AHA_4141 PF01258 Prokaryotic dksA/traR C4-type zinc finger AHA_4144 PF05981 CreA protein AHA_4145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AHA_4145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AHA_4146 PF00012 Hsp70 protein AHA_4149 PF02903 Alpha amylase, N-terminal ig-like domain AHA_4149 PF00128 Alpha amylase, catalytic domain AHA_4150 PF02719 Polysaccharide biosynthesis protein AHA_4151 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AHA_4152 PF00483 Nucleotidyl transferase AHA_4153 PF07722 Peptidase C26 AHA_4154 PF00391 PEP-utilising enzyme, mobile domain AHA_4154 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AHA_4155 PF02911 Formyl transferase, C-terminal domain AHA_4155 PF00551 Formyl transferase AHA_4160 PF13847 Methyltransferase domain AHA_4161 PF04989 Cephalosporin hydroxylase AHA_4162 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AHA_4163 PF08484 C-methyltransferase C-terminal domain AHA_4163 PF08421 Putative zinc binding domain AHA_4164 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AHA_4165 PF16363 GDP-mannose 4,6 dehydratase AHA_4166 PF00483 Nucleotidyl transferase AHA_4168 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AHA_4168 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AHA_4168 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AHA_4170 PF01501 Glycosyl transferase family 8 AHA_4171 PF00535 Glycosyl transferase family 2 AHA_4174 PF13193 AMP-binding enzyme C-terminal domain AHA_4174 PF00501 AMP-binding enzyme AHA_4178 PF02348 Cytidylyltransferase AHA_4180 PF08666 SAF domain AHA_4180 PF03102 NeuB family AHA_4183 PF16254 Domain of unknown function (DUF4910) AHA_4183 PF09940 Domain of unknown function (DUF2172) AHA_4183 PF16221 winged helix-turn-helix AHA_4191 PF05958 tRNA (Uracil-5-)-methyltransferase AHA_4192 PF00486 Transcriptional regulatory protein, C terminal AHA_4192 PF00072 Response regulator receiver domain AHA_4193 PF00512 His Kinase A (phospho-acceptor) domain AHA_4193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_4193 PF00672 HAMP domain AHA_4195 PF03949 Malic enzyme, NAD binding domain AHA_4195 PF00390 Malic enzyme, N-terminal domain AHA_4196 PF13460 NAD(P)H-binding AHA_4196 PF11066 Protein of unknown function (DUF2867) AHA_4197 PF01197 Ribosomal protein L31 AHA_4198 PF18074 Primosomal protein N C-terminal domain AHA_4198 PF17764 3′ DNA-binding domain (3′BD) AHA_4198 PF00271 Helicase conserved C-terminal domain AHA_4198 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AHA_4198 PF00270 DEAD/DEAH box helicase AHA_4200 PF00691 OmpA family AHA_4200 PF01389 OmpA-like transmembrane domain AHA_4201 PF00291 Pyridoxal-phosphate dependent enzyme AHA_4201 PF00585 C-terminal regulatory domain of Threonine dehydratase AHA_4202 PF00920 Dehydratase family AHA_4203 PF01063 Amino-transferase class IV AHA_4204 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AHA_4204 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AHA_4204 PF00205 Thiamine pyrophosphate enzyme, central domain AHA_4206 PF01078 Magnesium chelatase, subunit ChlI AHA_4206 PF13335 Magnesium chelatase, subunit ChlI C-terminal AHA_4207 PF01553 Acyltransferase AHA_4208 PF04463 Protein of unknown function (DUF523) AHA_4209 PF01553 Acyltransferase AHA_4211 PF00857 Isochorismatase family AHA_4212 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AHA_4212 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AHA_4214 PF00005 ABC transporter AHA_4215 PF00528 Binding-protein-dependent transport system inner membrane component AHA_4216 PF01323 DSBA-like thioredoxin domain AHA_4217 PF01636 Phosphotransferase enzyme family AHA_4218 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AHA_4218 PF12801 4Fe-4S binding domain AHA_4218 PF13746 4Fe-4S dicluster domain AHA_4219 PF06288 Protein of unknown function (DUF1040) AHA_4220 PF01590 GAF domain AHA_4220 PF00990 Diguanylate cyclase, GGDEF domain AHA_4220 PF00360 Phytochrome region AHA_4220 PF00563 EAL domain AHA_4221 PF09278 MerR, DNA binding AHA_4221 PF00376 MerR family regulatory protein AHA_4222 PF00403 Heavy-metal-associated domain AHA_4223 PF00156 Phosphoribosyl transferase domain AHA_4224 PF03725 3' exoribonuclease family, domain 2 AHA_4224 PF01138 3' exoribonuclease family, domain 1 AHA_4225 PF03755 YicC-like family, N-terminal region AHA_4225 PF08340 Domain of unknown function (DUF1732) AHA_4229 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AHA_4232 PF01370 NAD dependent epimerase/dehydratase family AHA_4233 PF08360 QacR-like protein, C-terminal region AHA_4233 PF00440 Bacterial regulatory proteins, tetR family AHA_4234 PF00155 Aminotransferase class I and II AHA_4235 PF00107 Zinc-binding dehydrogenase AHA_4235 PF08240 Alcohol dehydrogenase GroES-like domain AHA_4236 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AHA_4237 PF03707 Bacterial signalling protein N terminal repeat AHA_4237 PF00563 EAL domain AHA_4237 PF00990 Diguanylate cyclase, GGDEF domain AHA_4238 PF00580 UvrD/REP helicase N-terminal domain AHA_4238 PF13361 UvrD-like helicase C-terminal domain AHA_4239 PF00266 Aminotransferase class-V AHA_4240 PF02657 Fe-S metabolism associated domain AHA_4241 PF00899 ThiF family AHA_4248 PF03544 Gram-negative bacterial TonB protein C-terminal AHA_4249 PF02472 Biopolymer transport protein ExbD/TolR AHA_4250 PF01618 MotA/TolQ/ExbB proton channel family AHA_4251 PF01618 MotA/TolQ/ExbB proton channel family AHA_4253 PF03472 Autoinducer binding domain AHA_4253 PF00196 Bacterial regulatory proteins, luxR family AHA_4254 PF01380 SIS domain AHA_4255 PF08220 DeoR-like helix-turn-helix domain AHA_4255 PF00455 DeoR C terminal sensor domain AHA_4256 PF00072 Response regulator receiver domain AHA_4256 PF00486 Transcriptional regulatory protein, C terminal AHA_4257 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AHA_4257 PF00512 His Kinase A (phospho-acceptor) domain AHA_4257 PF00672 HAMP domain AHA_4258 PF00905 Penicillin binding protein transpeptidase domain AHA_4259 PF06123 Inner membrane protein CreD AHA_4260 PF12804 MobA-like NTP transferase domain AHA_4260 PF14602 Hexapeptide repeat of succinyl-transferase AHA_4260 PF00132 Bacterial transferase hexapeptide (six repeats) AHA_4261 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AHA_4261 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AHA_4262 PF02874 ATP synthase alpha/beta family, beta-barrel domain AHA_4262 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHA_4263 PF00231 ATP synthase AHA_4264 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AHA_4264 PF00306 ATP synthase alpha/beta chain, C terminal domain AHA_4264 PF02874 ATP synthase alpha/beta family, beta-barrel domain AHA_4265 PF00213 ATP synthase delta (OSCP) subunit AHA_4266 PF00430 ATP synthase B/B' CF(0) AHA_4267 PF00137 ATP synthase subunit C AHA_4268 PF00119 ATP synthase A chain AHA_4270 PF17762 HTH domain found in ParB protein AHA_4270 PF02195 ParB-like nuclease domain AHA_4271 PF13614 AAA domain AHA_4272 PF02527 rRNA small subunit methyltransferase G AHA_4273 PF01134 Glucose inhibited division protein A AHA_4273 PF13932 GidA associated domain AHA_4274 PF00258 Flavodoxin AHA_4275 PF07715 TonB-dependent Receptor Plug Domain AHA_4275 PF00593 TonB dependent receptor AHA_4276 PF00005 ABC transporter AHA_4277 PF00005 ABC transporter AHA_4279 PF01032 FecCD transport family AHA_4280 PF10396 GTP-binding protein TrmE N-terminus AHA_4280 PF12631 MnmE helical domain AHA_4280 PF01926 50S ribosome-binding GTPase AHA_4281 PF02096 60Kd inner membrane protein AHA_4281 PF14849 YidC periplasmic domain AHA_4282 PF01809 Putative membrane protein insertion efficiency factor AHA_4283 PF00825 Ribonuclease P AHA_4284 PF00468 Ribosomal protein L34 AHA_4285 PF00005 ABC transporter AHA_4286 PF00528 Binding-protein-dependent transport system inner membrane component AHA_4287 PF00497 Bacterial extracellular solute-binding proteins, family 3