AHA_0001 SM00382 ATPases associated with a variety of cellular activities AHA_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain AHA_0002 SM00480 DNA polymerase III beta subunit AHA_0004 SM00387 Histidine kinase-like ATPases AHA_0004 SM00433 TopoisomeraseII AHA_0010 SM00342 helix_turn_helix, arabinose operon control protein AHA_0013 SM00448 cheY-homologous receiver domain AHA_0013 SM00862 Transcriptional regulatory protein, C terminal AHA_0014 SM00387 Histidine kinase-like ATPases AHA_0014 SM00388 His Kinase A (phosphoacceptor) domain AHA_0020 SM00091 PAS domain AHA_0020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0020 SM00387 Histidine kinase-like ATPases AHA_0028 SM00458 Ricin-type beta-trefoil AHA_0032 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0032 SM00387 Histidine kinase-like ATPases AHA_0032 SM00388 His Kinase A (phosphoacceptor) domain AHA_0033 SM00448 cheY-homologous receiver domain AHA_0039 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_0039 SM00954 Region found in RelA / SpoT proteins AHA_0040 SM01409 AHA_0040 AHA_0041 SM00072 Guanylate kinase homologues. AHA_0044 SM00267 diguanylate cyclase AHA_0053 SM00267 diguanylate cyclase AHA_0063 SM00421 helix_turn_helix, Lux Regulon AHA_0063 SM00448 cheY-homologous receiver domain AHA_0064 SM00062 Bacterial periplasmic substrate-binding proteins AHA_0064 SM00387 Histidine kinase-like ATPases AHA_0064 SM00388 His Kinase A (phosphoacceptor) domain AHA_0064 SM00448 cheY-homologous receiver domain AHA_0066 SM00387 Histidine kinase-like ATPases AHA_0067 SM00448 cheY-homologous receiver domain AHA_0067 SM00850 LytTr DNA-binding domain AHA_0070 SM01001 AIR carboxylase AHA_0076 SM00360 RNA recognition motif AHA_0091 SM01004 Delta-aminolevulinic acid dehydratase AHA_0093 SM00052 Putative diguanylate phosphodiesterase AHA_0093 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_0093 SM00091 PAS domain AHA_0093 SM00267 diguanylate cyclase AHA_0097 SM00487 DEAD-like helicases superfamily AHA_0097 SM00490 helicase superfamily c-terminal domain AHA_0099 SM00357 Cold shock protein domain AHA_0099 SM00382 ATPases associated with a variety of cellular activities AHA_0099 SM00959 Rho termination factor, N-terminal domain AHA_0106 SM00450 Rhodanese Homology Domain AHA_0107 SM00342 helix_turn_helix, arabinose operon control protein AHA_0109 SM00382 ATPases associated with a variety of cellular activities AHA_0110 SM00382 ATPases associated with a variety of cellular activities AHA_0114 SM00354 helix_turn _helix lactose operon repressor AHA_0117 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_0117 SM00866 AHA_0117 AHA_0118 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_0118 SM00382 ATPases associated with a variety of cellular activities AHA_0119 SM00849 Metallo-beta-lactamase superfamily AHA_0127 SM00836 DALR anticodon binding domain AHA_0130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_0130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0136 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0136 SM00387 Histidine kinase-like ATPases AHA_0136 SM00388 His Kinase A (phosphoacceptor) domain AHA_0137 SM00448 cheY-homologous receiver domain AHA_0137 SM00862 Transcriptional regulatory protein, C terminal AHA_0149 SM00881 CoA binding domain AHA_0164 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AHA_0164 SM01232 AHA_0164 AHA_0174 SM00354 helix_turn _helix lactose operon repressor AHA_0175 SM00829 Enoylreductase AHA_0182 SM00563 Phosphate acyltransferases AHA_0189 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0189 SM00387 Histidine kinase-like ATPases AHA_0189 SM00388 His Kinase A (phosphoacceptor) domain AHA_0190 SM00448 cheY-homologous receiver domain AHA_0190 SM00862 Transcriptional regulatory protein, C terminal AHA_0192 SM00971 Serine acetyltransferase, N-terminal AHA_0196 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AHA_0196 SM00474 3'-5' exonuclease AHA_0196 SM00475 5'-3' exonuclease AHA_0196 SM00482 DNA polymerase A domain AHA_0204 SM00354 helix_turn _helix lactose operon repressor AHA_0205 SM01038 Beta galactosidase small chain AHA_0214 SM00829 Enoylreductase AHA_0218 SM00382 ATPases associated with a variety of cellular activities AHA_0237 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_0237 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0238 SM00831 Cation transporter/ATPase, N-terminus AHA_0240 SM00342 helix_turn_helix, arabinose operon control protein AHA_0244 SM00530 Helix-turn-helix XRE-family like proteins AHA_0248 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AHA_0248 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AHA_0259 SM00257 Lysin motif AHA_0263 SM01001 AIR carboxylase AHA_0272 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_0274 SM00382 ATPases associated with a variety of cellular activities AHA_0274 SM00448 cheY-homologous receiver domain AHA_0275 SM00091 PAS domain AHA_0275 SM00387 Histidine kinase-like ATPases AHA_0275 SM00388 His Kinase A (phosphoacceptor) domain AHA_0277 SM01230 AHA_0277 AHA_0284 SM00487 DEAD-like helicases superfamily AHA_0284 SM00490 helicase superfamily c-terminal domain AHA_0285 SM00155 Phospholipase D. Active site motifs. AHA_0290 SM00354 helix_turn _helix lactose operon repressor AHA_0294 SM00450 Rhodanese Homology Domain AHA_0303 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_0303 SM00732 Likely ribonuclease with RNase H fold. AHA_0305 SM00448 cheY-homologous receiver domain AHA_0305 SM00862 Transcriptional regulatory protein, C terminal AHA_0306 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0306 SM00387 Histidine kinase-like ATPases AHA_0306 SM00388 His Kinase A (phosphoacceptor) domain AHA_0308 SM01403 AHA_0308 AHA_0312 SM01382 AHA_0312 AHA_0312 SM01383 AHA_0312 AHA_0315 SM00322 K homology RNA-binding domain AHA_0319 SM01374 AHA_0319 AHA_0332 SM00363 S4 RNA-binding domain AHA_0332 SM01390 AHA_0332 AHA_0333 SM00662 RNA polymerases D AHA_0345 SM00822 AHA_0345 AHA_0364 SM00062 Bacterial periplasmic substrate-binding proteins AHA_0365 SM00155 Phospholipase D. Active site motifs. AHA_0371 SM00382 ATPases associated with a variety of cellular activities AHA_0371 SM00962 SRP54-type protein, GTPase domain AHA_0371 SM00963 SRP54-type protein, helical bundle domain AHA_0372 SM00382 ATPases associated with a variety of cellular activities AHA_0375 SM00947 Carbonic anhydrase AHA_0376 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_0376 SM00866 AHA_0376 AHA_0382 SM00052 Putative diguanylate phosphodiesterase AHA_0383 SM00052 Putative diguanylate phosphodiesterase AHA_0383 SM00267 diguanylate cyclase AHA_0389 SM00965 Secretin and TonB N terminus short domain AHA_0392 SM00382 ATPases associated with a variety of cellular activities AHA_0404 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_0406 SM00886 Stress responsive A/B Barrel Domain AHA_0417 SM00448 cheY-homologous receiver domain AHA_0417 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_0419 SM00387 Histidine kinase-like ATPases AHA_0419 SM00388 His Kinase A (phosphoacceptor) domain AHA_0419 SM00448 cheY-homologous receiver domain AHA_0420 SM00331 Sigma factor PP2C-like phosphatases AHA_0420 SM00387 Histidine kinase-like ATPases AHA_0422 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_0422 SM00091 PAS domain AHA_0424 SM00342 helix_turn_helix, arabinose operon control protein AHA_0432 SM01018 B12 binding domain AHA_0435 SM00388 His Kinase A (phosphoacceptor) domain AHA_0436 SM00448 cheY-homologous receiver domain AHA_0436 SM00862 Transcriptional regulatory protein, C terminal AHA_0438 SM00999 Aerolysin toxin AHA_0444 SM00876 Biotin and Thiamin Synthesis associated domain AHA_0450 SM00267 diguanylate cyclase AHA_0472 SM01219 AHA_0472 AHA_0479 SM00100 Cyclic nucleotide-monophosphate binding domain AHA_0485 SM00382 ATPases associated with a variety of cellular activities AHA_0487 SM00852 Probable molybdopterin binding domain AHA_0491 SM00344 helix_turn_helix ASNC type AHA_0495 SM00642 Alpha-amylase domain AHA_0526 SM00862 Transcriptional regulatory protein, C terminal AHA_0528 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AHA_0538 SM00487 DEAD-like helicases superfamily AHA_0538 SM00490 helicase superfamily c-terminal domain AHA_0547 SM00271 DnaJ molecular chaperone homology domain AHA_0554 SM00357 Cold shock protein domain AHA_0554 SM00955 AHA_0554 AHA_0557 SM00421 helix_turn_helix, Lux Regulon AHA_0564 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_0564 SM00895 AHA_0564 AHA_0567 SM00363 S4 RNA-binding domain AHA_0570 SM00382 ATPases associated with a variety of cellular activities AHA_0580 SM00421 helix_turn_helix, Lux Regulon AHA_0587 SM00342 helix_turn_helix, arabinose operon control protein AHA_0593 SM00859 Semialdehyde dehydrogenase, NAD binding domain AHA_0602 SM01266 AHA_0602 AHA_0608 SM00382 ATPases associated with a variety of cellular activities AHA_0611 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_0611 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0611 SM01049 AHA_0611 AHA_0617 SM00245 tail specific protease AHA_0632 SM00487 DEAD-like helicases superfamily AHA_0632 SM00490 helicase superfamily c-terminal domain AHA_0636 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_0649 SM00938 Nitrogen regulatory protein P-II AHA_0652 SM00382 ATPases associated with a variety of cellular activities AHA_0655 SM00382 ATPases associated with a variety of cellular activities AHA_0656 SM00062 Bacterial periplasmic substrate-binding proteins AHA_0656 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AHA_0660 SM00671 Sel1-like repeats. AHA_0663 SM01091 Transporter associated domain AHA_0665 SM00382 ATPases associated with a variety of cellular activities AHA_0665 SM00962 SRP54-type protein, GTPase domain AHA_0665 SM00963 SRP54-type protein, helical bundle domain AHA_0671 SM00927 DNA mismatch repair enzyme MutH AHA_0673 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_0678 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AHA_0681 SM00904 Riboflavin kinase AHA_0698 SM00938 Nitrogen regulatory protein P-II AHA_0701 SM00267 diguanylate cyclase AHA_0702 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_0702 SM00357 Cold shock protein domain AHA_0702 SM00955 AHA_0702 AHA_0703 SM00967 RNA 2'-O ribose methyltransferase substrate binding AHA_0717 SM00829 Enoylreductase AHA_0725 SM00382 ATPases associated with a variety of cellular activities AHA_0726 SM00327 von Willebrand factor (vWF) type A domain AHA_0727 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_0727 SM00091 PAS domain AHA_0727 SM00267 diguanylate cyclase AHA_0728 SM00028 Tetratricopeptide repeats AHA_0729 SM00267 diguanylate cyclase AHA_0732 SM00347 helix_turn_helix multiple antibiotic resistance protein AHA_0734 SM00347 helix_turn_helix multiple antibiotic resistance protein AHA_0740 SM00849 Metallo-beta-lactamase superfamily AHA_0742 SM00487 DEAD-like helicases superfamily AHA_0742 SM00490 helicase superfamily c-terminal domain AHA_0758 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0758 SM00387 Histidine kinase-like ATPases AHA_0758 SM00388 His Kinase A (phosphoacceptor) domain AHA_0759 SM00448 cheY-homologous receiver domain AHA_0759 SM00862 Transcriptional regulatory protein, C terminal AHA_0761 SM00382 ATPases associated with a variety of cellular activities AHA_0762 SM00062 Bacterial periplasmic substrate-binding proteins AHA_0763 SM00382 ATPases associated with a variety of cellular activities AHA_0770 SM00822 AHA_0770 AHA_0773 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_0773 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0775 SM00287 Bacterial SH3 domain homologues AHA_0780 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHA_0800 SM00358 Double-stranded RNA binding motif AHA_0800 SM00535 Ribonuclease III family AHA_0813 SM00420 helix_turn_helix, Deoxyribose operon repressor AHA_0813 SM01134 AHA_0813 AHA_0814 SM00644 AHA_0814 AHA_0816 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0816 SM00387 Histidine kinase-like ATPases AHA_0816 SM00388 His Kinase A (phosphoacceptor) domain AHA_0816 SM00448 cheY-homologous receiver domain AHA_0818 SM00954 Region found in RelA / SpoT proteins AHA_0821 SM01192 AHA_0821 AHA_0821 SM01193 AHA_0821 AHA_0829 SM00257 Lysin motif AHA_0834 SM00400 zinc finger AHA_0834 SM00493 AHA_0834 AHA_0834 SM00766 DNA primase DnaG DnaB-binding AHA_0837 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AHA_0837 SM00632 AHA_0837 AHA_0837 SM00642 Alpha-amylase domain AHA_0840 SM01209 AHA_0840 AHA_0840 SM01210 AHA_0840 AHA_0841 SM00798 AICARFT/IMPCHase bienzyme AHA_0841 SM00851 MGS-like domain AHA_0842 SM00422 helix_turn_helix, mercury resistance AHA_0845 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_0859 SM00883 Chaperonin 10 Kd subunit AHA_0862 SM00052 Putative diguanylate phosphodiesterase AHA_0862 SM00267 diguanylate cyclase AHA_0864 SM00487 DEAD-like helicases superfamily AHA_0864 SM00490 helicase superfamily c-terminal domain AHA_0872 SM00670 Large family of predicted nucleotide-binding domains AHA_0874 SM00382 ATPases associated with a variety of cellular activities AHA_0881 SM01329 AHA_0881 AHA_0882 SM00917 LeuA allosteric (dimerisation) domain AHA_0884 SM00014 Acid phosphatase homologues AHA_0896 SM01130 AHA_0896 AHA_0905 SM00073 Histidine Phosphotransfer domain AHA_0905 SM00091 PAS domain AHA_0905 SM00387 Histidine kinase-like ATPases AHA_0905 SM00388 His Kinase A (phosphoacceptor) domain AHA_0905 SM00448 cheY-homologous receiver domain AHA_0906 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_0908 SM00062 Bacterial periplasmic substrate-binding proteins AHA_0908 SM00073 Histidine Phosphotransfer domain AHA_0908 SM00091 PAS domain AHA_0908 SM00387 Histidine kinase-like ATPases AHA_0908 SM00388 His Kinase A (phosphoacceptor) domain AHA_0908 SM00448 cheY-homologous receiver domain AHA_0909 SM00052 Putative diguanylate phosphodiesterase AHA_0909 SM00448 cheY-homologous receiver domain AHA_0910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_0910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_0912 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AHA_0915 SM00382 ATPases associated with a variety of cellular activities AHA_0915 SM00930 AHA_0915 AHA_0921 SM00257 Lysin motif AHA_0921 SM00646 AHA_0921 AHA_0922 SM00853 MutL C terminal dimerisation domain AHA_0922 SM01340 AHA_0922 AHA_0926 SM00244 prohibitin homologues AHA_0927 SM00244 prohibitin homologues AHA_0937 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_0939 SM00530 Helix-turn-helix XRE-family like proteins AHA_0942 SM00650 Ribosomal RNA adenine dimethylases AHA_0948 SM00271 DnaJ molecular chaperone homology domain AHA_0950 SM00382 ATPases associated with a variety of cellular activities AHA_0960 SM01133 AHA_0960 AHA_0964 SM00382 ATPases associated with a variety of cellular activities AHA_0974 SM00530 Helix-turn-helix XRE-family like proteins AHA_0976 SM00387 Histidine kinase-like ATPases AHA_0976 SM00388 His Kinase A (phosphoacceptor) domain AHA_0976 SM00448 cheY-homologous receiver domain AHA_0977 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AHA_0977 SM00495 Chitin-binding domain type 3 AHA_0977 SM00636 AHA_0977 AHA_0979 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AHA_0979 SM00495 Chitin-binding domain type 3 AHA_0981 SM00100 Cyclic nucleotide-monophosphate binding domain AHA_0981 SM00419 helix_turn_helix, cAMP Regulatory protein AHA_0993 SM00984 UDP binding domain AHA_0996 SM00267 diguanylate cyclase AHA_0997 SM00260 Two component signalling adaptor domain AHA_0997 SM00448 cheY-homologous receiver domain AHA_1002 SM00320 WD40 repeats AHA_1004 SM00382 ATPases associated with a variety of cellular activities AHA_1004 SM00448 cheY-homologous receiver domain AHA_1009 SM00052 Putative diguanylate phosphodiesterase AHA_1010 SM00978 AHA_1010 AHA_1012 SM00382 ATPases associated with a variety of cellular activities AHA_1015 SM01005 Alanine racemase, C-terminal domain AHA_1018 SM00052 Putative diguanylate phosphodiesterase AHA_1023 SM00421 helix_turn_helix, Lux Regulon AHA_1023 SM00448 cheY-homologous receiver domain AHA_1025 SM00062 Bacterial periplasmic substrate-binding proteins AHA_1025 SM00387 Histidine kinase-like ATPases AHA_1025 SM00388 His Kinase A (phosphoacceptor) domain AHA_1025 SM00448 cheY-homologous receiver domain AHA_1030 SM00448 cheY-homologous receiver domain AHA_1032 SM00138 Methyltransferase, chemotaxis proteins AHA_1033 SM00091 PAS domain AHA_1033 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1034 SM00260 Two component signalling adaptor domain AHA_1035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1036 SM00073 Histidine Phosphotransfer domain AHA_1036 SM00260 Two component signalling adaptor domain AHA_1036 SM00387 Histidine kinase-like ATPases AHA_1036 SM01231 AHA_1036 AHA_1038 SM00448 cheY-homologous receiver domain AHA_1039 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1046 SM00342 helix_turn_helix, arabinose operon control protein AHA_1046 SM00478 endonuclease III AHA_1046 SM01009 AlkA N-terminal domain AHA_1049 SM00463 Small MutS-related domain AHA_1054 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1059 SM01007 Class II Aldolase and Adducin N-terminal domain AHA_1062 SM00420 helix_turn_helix, Deoxyribose operon repressor AHA_1062 SM01134 AHA_1062 AHA_1064 SM00257 Lysin motif AHA_1066 SM00634 Bacterial Ig-like domain (group 1) AHA_1068 SM00052 Putative diguanylate phosphodiesterase AHA_1068 SM00267 diguanylate cyclase AHA_1069 SM00862 Transcriptional regulatory protein, C terminal AHA_1070 SM00862 Transcriptional regulatory protein, C terminal AHA_1084 SM00530 Helix-turn-helix XRE-family like proteins AHA_1092 SM00830 Chorismate mutase type II AHA_1100 SM00422 helix_turn_helix, mercury resistance AHA_1117 SM00421 helix_turn_helix, Lux Regulon AHA_1138 SM00900 AHA_1138 AHA_1146 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1146 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1152 SM01329 AHA_1152 AHA_1153 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AHA_1153 SM00475 5'-3' exonuclease AHA_1155 SM00267 diguanylate cyclase AHA_1156 SM00028 Tetratricopeptide repeats AHA_1171 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_1180 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AHA_1182 SM00935 Outer membrane protein (OmpH-like) AHA_1188 SM00481 DNA polymerase alpha chain like domain AHA_1190 SM00862 Transcriptional regulatory protein, C terminal AHA_1197 SM00849 Metallo-beta-lactamase superfamily AHA_1204 SM00382 ATPases associated with a variety of cellular activities AHA_1207 SM00977 TilS substrate C-terminal domain AHA_1208 SM00267 diguanylate cyclase AHA_1213 SM00421 helix_turn_helix, Lux Regulon AHA_1213 SM00448 cheY-homologous receiver domain AHA_1215 SM00642 Alpha-amylase domain AHA_1221 SM00062 Bacterial periplasmic substrate-binding proteins AHA_1228 SM00771 ZipA, C-terminal domain (FtsZ-binding) AHA_1229 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AHA_1229 SM00292 breast cancer carboxy-terminal domain AHA_1229 SM00532 Ligase N family AHA_1236 SM00062 Bacterial periplasmic substrate-binding proteins AHA_1240 SM00347 helix_turn_helix multiple antibiotic resistance protein AHA_1243 SM00919 Malic enzyme, NAD binding domain AHA_1243 SM01274 AHA_1243 AHA_1244 SM00387 Histidine kinase-like ATPases AHA_1245 SM00448 cheY-homologous receiver domain AHA_1247 SM00342 helix_turn_helix, arabinose operon control protein AHA_1249 SM00382 ATPases associated with a variety of cellular activities AHA_1253 SM00448 cheY-homologous receiver domain AHA_1253 SM00862 Transcriptional regulatory protein, C terminal AHA_1254 SM00387 Histidine kinase-like ATPases AHA_1254 SM00388 His Kinase A (phosphoacceptor) domain AHA_1262 SM00382 ATPases associated with a variety of cellular activities AHA_1274 SM00267 diguanylate cyclase AHA_1277 SM00342 helix_turn_helix, arabinose operon control protein AHA_1278 SM00919 Malic enzyme, NAD binding domain AHA_1278 SM01274 AHA_1278 AHA_1283 SM00530 Helix-turn-helix XRE-family like proteins AHA_1286 SM00267 diguanylate cyclase AHA_1290 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_1294 SM00342 helix_turn_helix, arabinose operon control protein AHA_1304 SM00642 Alpha-amylase domain AHA_1308 SM00155 Phospholipase D. Active site motifs. AHA_1322 SM00448 cheY-homologous receiver domain AHA_1322 SM00862 Transcriptional regulatory protein, C terminal AHA_1323 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1323 SM00387 Histidine kinase-like ATPases AHA_1323 SM00388 His Kinase A (phosphoacceptor) domain AHA_1328 SM00877 AHA_1328 AHA_1334 SM00877 AHA_1334 AHA_1335 SM00877 AHA_1335 AHA_1336 SM00877 AHA_1336 AHA_1338 SM00862 Transcriptional regulatory protein, C terminal AHA_1344 SM00481 DNA polymerase alpha chain like domain AHA_1352 SM00387 Histidine kinase-like ATPases AHA_1353 SM00448 cheY-homologous receiver domain AHA_1353 SM00862 Transcriptional regulatory protein, C terminal AHA_1354 SM00382 ATPases associated with a variety of cellular activities AHA_1356 SM00382 ATPases associated with a variety of cellular activities AHA_1361 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_1362 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_1368 SM00382 ATPases associated with a variety of cellular activities AHA_1380 SM00382 ATPases associated with a variety of cellular activities AHA_1380 SM00962 SRP54-type protein, GTPase domain AHA_1383 SM00448 cheY-homologous receiver domain AHA_1385 SM00073 Histidine Phosphotransfer domain AHA_1385 SM00260 Two component signalling adaptor domain AHA_1385 SM00387 Histidine kinase-like ATPases AHA_1385 SM01231 AHA_1385 AHA_1386 SM00448 cheY-homologous receiver domain AHA_1390 SM00260 Two component signalling adaptor domain AHA_1391 SM00260 Two component signalling adaptor domain AHA_1393 SM00382 ATPases associated with a variety of cellular activities AHA_1412 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AHA_1424 SM00422 helix_turn_helix, mercury resistance AHA_1426 SM00354 helix_turn _helix lactose operon repressor AHA_1435 SM00342 helix_turn_helix, arabinose operon control protein AHA_1436 SM01329 AHA_1436 AHA_1441 SM00507 HNH nucleases AHA_1446 SM00859 Semialdehyde dehydrogenase, NAD binding domain AHA_1452 SM00858 AHA_1452 AHA_1456 SM00382 ATPases associated with a variety of cellular activities AHA_1470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1475 SM01091 Transporter associated domain AHA_1487 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1489 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_1489 SM00876 Biotin and Thiamin Synthesis associated domain AHA_1494 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1497 SM00890 Domain of unknown function AHA_1512 SM00458 Ricin-type beta-trefoil AHA_1528 SM01081 Putative carbohydrate binding domain AHA_1539 SM00347 helix_turn_helix multiple antibiotic resistance protein AHA_1544 SM00382 ATPases associated with a variety of cellular activities AHA_1559 SM00052 Putative diguanylate phosphodiesterase AHA_1559 SM00267 diguanylate cyclase AHA_1561 SM00354 helix_turn _helix lactose operon repressor AHA_1566 SM00257 Lysin motif AHA_1567 SM00849 Metallo-beta-lactamase superfamily AHA_1570 SM00479 AHA_1570 AHA_1572 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_1576 SM00073 Histidine Phosphotransfer domain AHA_1578 SM00897 FIST N domain AHA_1578 SM01204 AHA_1578 AHA_1579 SM00387 Histidine kinase-like ATPases AHA_1579 SM00388 His Kinase A (phosphoacceptor) domain AHA_1579 SM00448 cheY-homologous receiver domain AHA_1580 SM00464 Found in ATP-dependent protease La (LON) AHA_1581 SM00421 helix_turn_helix, Lux Regulon AHA_1581 SM00448 cheY-homologous receiver domain AHA_1582 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1582 SM00387 Histidine kinase-like ATPases AHA_1583 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_1586 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AHA_1591 SM00852 Probable molybdopterin binding domain AHA_1597 SM00382 ATPases associated with a variety of cellular activities AHA_1600 SM00852 Probable molybdopterin binding domain AHA_1602 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1602 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1607 SM00867 YceI-like domain AHA_1609 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AHA_1611 SM00563 Phosphate acyltransferases AHA_1616 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1616 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1621 SM00855 Phosphoglycerate mutase family AHA_1622 SM00507 HNH nucleases AHA_1626 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AHA_1628 SM00363 S4 RNA-binding domain AHA_1633 SM00871 Bacterial transcription activator, effector binding domain AHA_1639 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_1651 SM00420 helix_turn_helix, Deoxyribose operon repressor AHA_1651 SM01134 AHA_1651 AHA_1655 SM00830 Chorismate mutase type II AHA_1670 SM00382 ATPases associated with a variety of cellular activities AHA_1684 SM00382 ATPases associated with a variety of cellular activities AHA_1685 SM00062 Bacterial periplasmic substrate-binding proteins AHA_1685 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AHA_1690 SM00052 Putative diguanylate phosphodiesterase AHA_1690 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_1690 SM00091 PAS domain AHA_1690 SM00267 diguanylate cyclase AHA_1691 SM00450 Rhodanese Homology Domain AHA_1692 SM01359 AHA_1692 AHA_1692 SM01360 AHA_1692 AHA_1695 SM00981 AHA_1695 AHA_1709 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1709 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1722 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AHA_1723 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AHA_1725 SM00382 ATPases associated with a variety of cellular activities AHA_1733 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_1736 SM01323 AHA_1736 AHA_1739 SM00450 Rhodanese Homology Domain AHA_1740 SM00028 Tetratricopeptide repeats AHA_1750 SM00271 DnaJ molecular chaperone homology domain AHA_1755 SM00562 AHA_1755 AHA_1757 SM00028 Tetratricopeptide repeats AHA_1758 SM00530 Helix-turn-helix XRE-family like proteins AHA_1762 SM00564 beta-propeller repeat AHA_1765 SM00062 Bacterial periplasmic substrate-binding proteins AHA_1766 SM01211 AHA_1766 AHA_1767 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_1768 SM00091 PAS domain AHA_1768 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_1769 SM00897 FIST N domain AHA_1769 SM01204 AHA_1769 AHA_1777 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AHA_1777 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AHA_1778 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AHA_1791 SM00360 RNA recognition motif AHA_1796 SM00091 PAS domain AHA_1797 SM00448 cheY-homologous receiver domain AHA_1800 SM00052 Putative diguanylate phosphodiesterase AHA_1800 SM00267 diguanylate cyclase AHA_1809 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_1810 SM00411 bacterial (prokaryotic) histone like domain AHA_1812 SM00028 Tetratricopeptide repeats AHA_1813 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AHA_1815 SM01144 AHA_1815 AHA_1820 SM00528 Domain in histone-like proteins of HNS family AHA_1823 SM01154 AHA_1823 AHA_1831 SM00671 Sel1-like repeats. AHA_1841 SM00382 ATPases associated with a variety of cellular activities AHA_1841 SM01086 C-terminal, D2-small domain, of ClpB protein AHA_1842 SM00382 ATPases associated with a variety of cellular activities AHA_1855 SM00357 Cold shock protein domain AHA_1857 SM00382 ATPases associated with a variety of cellular activities AHA_1857 SM01086 C-terminal, D2-small domain, of ClpB protein AHA_1858 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_1862 SM00267 diguanylate cyclase AHA_1862 SM00448 cheY-homologous receiver domain AHA_1864 SM00344 helix_turn_helix ASNC type AHA_1865 SM00843 AHA_1865 AHA_1867 SM00382 ATPases associated with a variety of cellular activities AHA_1872 SM00382 ATPases associated with a variety of cellular activities AHA_1873 SM00382 ATPases associated with a variety of cellular activities AHA_1877 SM00382 ATPases associated with a variety of cellular activities AHA_1886 SM00091 PAS domain AHA_1886 SM00382 ATPases associated with a variety of cellular activities AHA_1888 SM00267 diguanylate cyclase AHA_1888 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1899 SM00479 AHA_1899 AHA_1901 SM01007 Class II Aldolase and Adducin N-terminal domain AHA_1904 SM00382 ATPases associated with a variety of cellular activities AHA_1906 SM00342 helix_turn_helix, arabinose operon control protein AHA_1920 SM00825 Beta-ketoacyl synthase AHA_1927 SM00861 Transketolase, pyrimidine binding domain AHA_1930 SM00881 CoA binding domain AHA_1935 SM00382 ATPases associated with a variety of cellular activities AHA_1937 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_1937 SM00866 AHA_1937 AHA_1945 SM00859 Semialdehyde dehydrogenase, NAD binding domain AHA_1951 SM00822 AHA_1951 AHA_1952 SM00342 helix_turn_helix, arabinose operon control protein AHA_1952 SM00871 Bacterial transcription activator, effector binding domain AHA_1958 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_1966 SM00382 ATPases associated with a variety of cellular activities AHA_1976 SM00893 Electron transfer flavoprotein domain AHA_1977 SM00893 Electron transfer flavoprotein domain AHA_1981 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_1981 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_1982 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_1989 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_1989 SM01240 AHA_1989 AHA_1993 SM00342 helix_turn_helix, arabinose operon control protein AHA_1995 SM00364 Leucine-rich repeats, bacterial type AHA_1995 SM00369 Leucine-rich repeats, typical (most populated) subfamily AHA_1998 SM00855 Phosphoglycerate mutase family AHA_2003 SM00487 DEAD-like helicases superfamily AHA_2003 SM00490 helicase superfamily c-terminal domain AHA_2003 SM00982 AHA_2003 AHA_2003 SM01058 CarD-like/TRCF domain AHA_2006 SM00382 ATPases associated with a variety of cellular activities AHA_2008 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_2012 SM00382 ATPases associated with a variety of cellular activities AHA_2012 SM00994 ClpX C4-type zinc finger AHA_2012 SM01086 C-terminal, D2-small domain, of ClpB protein AHA_2013 SM00382 ATPases associated with a variety of cellular activities AHA_2013 SM00464 Found in ATP-dependent protease La (LON) AHA_2014 SM00411 bacterial (prokaryotic) histone like domain AHA_2016 SM00382 ATPases associated with a variety of cellular activities AHA_2022 SM00530 Helix-turn-helix XRE-family like proteins AHA_2025 SM00530 Helix-turn-helix XRE-family like proteins AHA_2046 SM00671 Sel1-like repeats. AHA_2047 SM00528 Domain in histone-like proteins of HNS family AHA_2058 SM00479 AHA_2058 AHA_2059 SM00100 Cyclic nucleotide-monophosphate binding domain AHA_2059 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_2072 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2073 SM00422 helix_turn_helix, mercury resistance AHA_2075 SM00878 Biotin carboxylase C-terminal domain AHA_2075 SM01209 AHA_2075 AHA_2084 SM00822 AHA_2084 AHA_2089 SM00052 Putative diguanylate phosphodiesterase AHA_2092 SM00052 Putative diguanylate phosphodiesterase AHA_2092 SM00267 diguanylate cyclase AHA_2094 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_2095 SM00822 AHA_2095 AHA_2097 SM00518 AP endonuclease family 2 AHA_2103 SM00090 RIO-like kinase AHA_2105 SM00267 diguanylate cyclase AHA_2107 SM00486 DNA polymerase type-B family AHA_2124 SM00347 helix_turn_helix multiple antibiotic resistance protein AHA_2141 SM00422 helix_turn_helix, mercury resistance AHA_2142 SM00052 Putative diguanylate phosphodiesterase AHA_2149 SM00028 Tetratricopeptide repeats AHA_2150 SM00327 von Willebrand factor (vWF) type A domain AHA_2156 SM01322 AHA_2156 AHA_2160 SM00382 ATPases associated with a variety of cellular activities AHA_2172 SM01092 CO dehydrogenase flavoprotein C-terminal domain AHA_2173 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AHA_2177 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AHA_2178 SM01092 CO dehydrogenase flavoprotein C-terminal domain AHA_2180 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AHA_2188 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_2188 SM00091 PAS domain AHA_2188 SM00387 Histidine kinase-like ATPases AHA_2188 SM00388 His Kinase A (phosphoacceptor) domain AHA_2188 SM00448 cheY-homologous receiver domain AHA_2189 SM00091 PAS domain AHA_2190 SM00448 cheY-homologous receiver domain AHA_2190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_2199 SM00491 AHA_2199 AHA_2205 SM00341 Helicase and RNase D C-terminal AHA_2205 SM00474 3'-5' exonuclease AHA_2206 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2211 SM00382 ATPases associated with a variety of cellular activities AHA_2215 SM00421 helix_turn_helix, Lux Regulon AHA_2216 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_2217 SM00382 ATPases associated with a variety of cellular activities AHA_2217 SM00487 DEAD-like helicases superfamily AHA_2217 SM00490 helicase superfamily c-terminal domain AHA_2217 SM00847 Helicase associated domain (HA2) Add an annotation AHA_2220 SM00387 Histidine kinase-like ATPases AHA_2220 SM00388 His Kinase A (phosphoacceptor) domain AHA_2220 SM00448 cheY-homologous receiver domain AHA_2221 SM00849 Metallo-beta-lactamase superfamily AHA_2222 SM00448 cheY-homologous receiver domain AHA_2222 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_2223 SM00450 Rhodanese Homology Domain AHA_2227 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AHA_2229 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2232 SM01126 AHA_2232 AHA_2239 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_2240 SM00363 S4 RNA-binding domain AHA_2250 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AHA_2251 SM00822 AHA_2251 AHA_2253 SM00825 Beta-ketoacyl synthase AHA_2257 SM00382 ATPases associated with a variety of cellular activities AHA_2275 SM00822 AHA_2275 AHA_2283 SM00382 ATPases associated with a variety of cellular activities AHA_2285 SM00981 AHA_2285 AHA_2291 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AHA_2291 SM00245 tail specific protease AHA_2292 SM00945 ProQ/FINO family AHA_2303 SM00100 Cyclic nucleotide-monophosphate binding domain AHA_2303 SM00419 helix_turn_helix, cAMP Regulatory protein AHA_2310 SM00382 ATPases associated with a variety of cellular activities AHA_2314 SM00354 helix_turn _helix lactose operon repressor AHA_2315 SM00267 diguanylate cyclase AHA_2320 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2320 SM00387 Histidine kinase-like ATPases AHA_2320 SM00388 His Kinase A (phosphoacceptor) domain AHA_2320 SM00448 cheY-homologous receiver domain AHA_2321 SM00411 bacterial (prokaryotic) histone like domain AHA_2322 SM00873 B3/4 domain AHA_2322 SM00874 tRNA synthetase B5 domain AHA_2322 SM00896 Ferredoxin-fold anticodon binding domain AHA_2327 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AHA_2328 SM00671 Sel1-like repeats. AHA_2329 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_2330 SM00434 DNA Topoisomerase IV AHA_2336 SM00925 MltA specific insert domain AHA_2344 SM00354 helix_turn _helix lactose operon repressor AHA_2349 SM00354 helix_turn _helix lactose operon repressor AHA_2352 SM00953 AHA_2352 AHA_2353 SM00487 DEAD-like helicases superfamily AHA_2353 SM00490 helicase superfamily c-terminal domain AHA_2354 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2357 SM00463 Small MutS-related domain AHA_2359 SM00091 PAS domain AHA_2359 SM00267 diguanylate cyclase AHA_2360 SM00855 Phosphoglycerate mutase family AHA_2363 SM00495 Chitin-binding domain type 3 AHA_2365 SM00782 PhnA Zinc-Ribbon AHA_2395 SM00642 Alpha-amylase domain AHA_2398 SM00342 helix_turn_helix, arabinose operon control protein AHA_2402 SM01144 AHA_2402 AHA_2405 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AHA_2407 SM00487 DEAD-like helicases superfamily AHA_2407 SM00490 helicase superfamily c-terminal domain AHA_2412 SM01118 AHA_2412 AHA_2425 SM00382 ATPases associated with a variety of cellular activities AHA_2427 SM00382 ATPases associated with a variety of cellular activities AHA_2428 SM00387 Histidine kinase-like ATPases AHA_2428 SM00388 His Kinase A (phosphoacceptor) domain AHA_2428 SM00448 cheY-homologous receiver domain AHA_2439 SM00487 DEAD-like helicases superfamily AHA_2439 SM00490 helicase superfamily c-terminal domain AHA_2440 SM00763 PrkA AAA domain AHA_2443 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_2448 SM00487 DEAD-like helicases superfamily AHA_2448 SM00490 helicase superfamily c-terminal domain AHA_2451 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2455 SM00448 cheY-homologous receiver domain AHA_2456 SM00091 PAS domain AHA_2456 SM00387 Histidine kinase-like ATPases AHA_2458 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2458 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_2458 SM01049 AHA_2458 AHA_2474 SM00823 Phosphopantetheine attachment site AHA_2476 SM00823 Phosphopantetheine attachment site AHA_2484 SM00052 Putative diguanylate phosphodiesterase AHA_2484 SM00267 diguanylate cyclase AHA_2490 SM00387 Histidine kinase-like ATPases AHA_2491 SM00493 AHA_2491 AHA_2493 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_2493 SM00382 ATPases associated with a variety of cellular activities AHA_2516 SM00382 ATPases associated with a variety of cellular activities AHA_2517 SM00382 ATPases associated with a variety of cellular activities AHA_2527 SM00448 cheY-homologous receiver domain AHA_2529 SM00073 Histidine Phosphotransfer domain AHA_2529 SM00260 Two component signalling adaptor domain AHA_2529 SM00387 Histidine kinase-like ATPases AHA_2529 SM01231 AHA_2529 AHA_2530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2531 SM00260 Two component signalling adaptor domain AHA_2532 SM00138 Methyltransferase, chemotaxis proteins AHA_2533 SM00448 cheY-homologous receiver domain AHA_2534 SM00052 Putative diguanylate phosphodiesterase AHA_2534 SM00448 cheY-homologous receiver domain AHA_2535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_2536 SM01005 Alanine racemase, C-terminal domain AHA_2537 SM00873 B3/4 domain AHA_2538 SM00530 Helix-turn-helix XRE-family like proteins AHA_2552 SM00382 ATPases associated with a variety of cellular activities AHA_2600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_2607 SM01005 Alanine racemase, C-terminal domain AHA_2609 SM00382 ATPases associated with a variety of cellular activities AHA_2610 SM00382 ATPases associated with a variety of cellular activities AHA_2617 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_2618 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_2619 SM00448 cheY-homologous receiver domain AHA_2619 SM00850 LytTr DNA-binding domain AHA_2623 SM00487 DEAD-like helicases superfamily AHA_2623 SM00490 helicase superfamily c-terminal domain AHA_2630 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_2630 SM00091 PAS domain AHA_2630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2638 SM00900 AHA_2638 AHA_2640 SM00478 endonuclease III AHA_2640 SM00525 AHA_2640 AHA_2643 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2644 SM00479 AHA_2644 AHA_2646 SM00487 DEAD-like helicases superfamily AHA_2646 SM00490 helicase superfamily c-terminal domain AHA_2651 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_2651 SM01091 Transporter associated domain AHA_2666 SM00267 diguanylate cyclase AHA_2667 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2682 SM00859 Semialdehyde dehydrogenase, NAD binding domain AHA_2684 SM00014 Acid phosphatase homologues AHA_2689 SM01217 AHA_2689 AHA_2690 SM00342 helix_turn_helix, arabinose operon control protein AHA_2697 SM00327 von Willebrand factor (vWF) type A domain AHA_2698 SM00052 Putative diguanylate phosphodiesterase AHA_2698 SM00267 diguanylate cyclase AHA_2701 SM00382 ATPases associated with a variety of cellular activities AHA_2702 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_2705 SM00382 ATPases associated with a variety of cellular activities AHA_2707 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2710 SM00422 helix_turn_helix, mercury resistance AHA_2713 SM01351 AHA_2713 AHA_2715 SM00487 DEAD-like helicases superfamily AHA_2715 SM00490 helicase superfamily c-terminal domain AHA_2718 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_2722 SM00917 LeuA allosteric (dimerisation) domain AHA_2723 SM00851 MGS-like domain AHA_2723 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AHA_2724 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AHA_2735 SM00382 ATPases associated with a variety of cellular activities AHA_2737 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2739 SM00382 ATPases associated with a variety of cellular activities AHA_2744 SM00899 AHA_2744 AHA_2750 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2751 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2752 SM00267 diguanylate cyclase AHA_2754 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_2756 SM00840 AHA_2756 AHA_2767 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2768 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_2768 SM00091 PAS domain AHA_2768 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_2773 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AHA_2773 SM00465 GIY-YIG type nucleases (URI domain) AHA_2774 SM00421 helix_turn_helix, Lux Regulon AHA_2774 SM00448 cheY-homologous receiver domain AHA_2778 SM00382 ATPases associated with a variety of cellular activities AHA_2779 SM00849 Metallo-beta-lactamase superfamily AHA_2786 SM00491 AHA_2786 AHA_2791 SM00098 Alkaline phosphatase homologues AHA_2792 SM00098 Alkaline phosphatase homologues AHA_2796 SM00421 helix_turn_helix, Lux Regulon AHA_2796 SM00448 cheY-homologous receiver domain AHA_2797 SM00387 Histidine kinase-like ATPases AHA_2799 SM00267 diguanylate cyclase AHA_2800 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2800 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AHA_2802 SM00382 ATPases associated with a variety of cellular activities AHA_2809 SM01091 Transporter associated domain AHA_2811 SM00382 ATPases associated with a variety of cellular activities AHA_2824 SM00382 ATPases associated with a variety of cellular activities AHA_2824 SM00448 cheY-homologous receiver domain AHA_2825 SM00091 PAS domain AHA_2825 SM00387 Histidine kinase-like ATPases AHA_2825 SM00388 His Kinase A (phosphoacceptor) domain AHA_2826 SM00382 ATPases associated with a variety of cellular activities AHA_2831 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_2831 SM00924 MgtE intracellular N domain AHA_2834 SM00047 Lysozyme subfamily 2 AHA_2843 SM00138 Methyltransferase, chemotaxis proteins AHA_2844 SM00260 Two component signalling adaptor domain AHA_2844 SM00448 cheY-homologous receiver domain AHA_2845 SM00858 AHA_2845 AHA_2851 SM00363 S4 RNA-binding domain AHA_2853 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_2857 SM00420 helix_turn_helix, Deoxyribose operon repressor AHA_2857 SM01134 AHA_2857 AHA_2864 SM00357 Cold shock protein domain AHA_2866 SM00861 Transketolase, pyrimidine binding domain AHA_2871 SM00487 DEAD-like helicases superfamily AHA_2871 SM00490 helicase superfamily c-terminal domain AHA_2878 SM00226 Low molecular weight phosphatase family AHA_2880 SM00984 UDP binding domain AHA_2887 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AHA_2887 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AHA_2890 SM01126 AHA_2890 AHA_2899 SM00382 ATPases associated with a variety of cellular activities AHA_2917 SM00363 S4 RNA-binding domain AHA_2921 SM00481 DNA polymerase alpha chain like domain AHA_2932 SM00247 Beta/gamma crystallins AHA_2936 SM00062 Bacterial periplasmic substrate-binding proteins AHA_2937 SM00382 ATPases associated with a variety of cellular activities AHA_2956 SM00028 Tetratricopeptide repeats AHA_2956 SM00448 cheY-homologous receiver domain AHA_2968 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_2968 SM00091 PAS domain AHA_2968 SM00267 diguanylate cyclase AHA_2973 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AHA_2977 SM00354 helix_turn _helix lactose operon repressor AHA_2978 SM00640 Glycosyl hydrolases family 32 AHA_2982 SM00271 DnaJ molecular chaperone homology domain AHA_2987 SM01131 AHA_2987 AHA_2990 SM00382 ATPases associated with a variety of cellular activities AHA_2994 SM00528 Domain in histone-like proteins of HNS family AHA_2998 SM00862 Transcriptional regulatory protein, C terminal AHA_3000 SM00530 Helix-turn-helix XRE-family like proteins AHA_3009 SM00062 Bacterial periplasmic substrate-binding proteins AHA_3009 SM00387 Histidine kinase-like ATPases AHA_3009 SM00388 His Kinase A (phosphoacceptor) domain AHA_3009 SM00448 cheY-homologous receiver domain AHA_3009 SM00918 Ligated ion channel L-glutamate- and glycine-binding site AHA_3012 SM00954 Region found in RelA / SpoT proteins AHA_3013 SM00382 ATPases associated with a variety of cellular activities AHA_3026 SM00448 cheY-homologous receiver domain AHA_3026 SM00862 Transcriptional regulatory protein, C terminal AHA_3029 SM00382 ATPases associated with a variety of cellular activities AHA_3030 SM00382 ATPases associated with a variety of cellular activities AHA_3037 SM00382 ATPases associated with a variety of cellular activities AHA_3042 SM00267 diguanylate cyclase AHA_3059 SM00919 Malic enzyme, NAD binding domain AHA_3059 SM01274 AHA_3059 AHA_3060 SM00387 Histidine kinase-like ATPases AHA_3060 SM00448 cheY-homologous receiver domain AHA_3063 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AHA_3072 SM00387 Histidine kinase-like ATPases AHA_3072 SM00388 His Kinase A (phosphoacceptor) domain AHA_3073 SM00382 ATPases associated with a variety of cellular activities AHA_3073 SM00448 cheY-homologous receiver domain AHA_3076 SM00382 ATPases associated with a variety of cellular activities AHA_3078 SM00852 Probable molybdopterin binding domain AHA_3080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_3082 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_3082 SM00091 PAS domain AHA_3082 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3092 SM00091 PAS domain AHA_3092 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3092 SM00387 Histidine kinase-like ATPases AHA_3092 SM00388 His Kinase A (phosphoacceptor) domain AHA_3092 SM00448 cheY-homologous receiver domain AHA_3096 SM00382 ATPases associated with a variety of cellular activities AHA_3097 SM00382 ATPases associated with a variety of cellular activities AHA_3101 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3104 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AHA_3104 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AHA_3104 SM00493 AHA_3104 AHA_3113 SM00788 Adenylosuccinate synthetase AHA_3115 SM00342 helix_turn_helix, arabinose operon control protein AHA_3117 SM00363 S4 RNA-binding domain AHA_3123 SM00861 Transketolase, pyrimidine binding domain AHA_3125 SM00731 SprT homologues. AHA_3129 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3131 SM00732 Likely ribonuclease with RNase H fold. AHA_3138 SM00460 Transglutaminase/protease-like homologues AHA_3142 SM00986 Uracil DNA glycosylase superfamily AHA_3142 SM00987 UreE urease accessory protein, C-terminal domain AHA_3149 SM00937 AHA_3149 AHA_3154 SM01400 AHA_3154 AHA_3170 SM01022 AHA_3170 AHA_3172 SM00642 Alpha-amylase domain AHA_3174 SM00890 Domain of unknown function AHA_3177 SM01150 AHA_3177 AHA_3190 SM00965 Secretin and TonB N terminus short domain AHA_3194 SM00842 Cell division protein FtsA AHA_3197 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3197 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3199 SM00849 Metallo-beta-lactamase superfamily AHA_3207 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3207 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3219 SM01236 AHA_3219 AHA_3220 SM00822 AHA_3220 AHA_3222 SM00448 cheY-homologous receiver domain AHA_3222 SM00862 Transcriptional regulatory protein, C terminal AHA_3223 SM00387 Histidine kinase-like ATPases AHA_3223 SM00388 His Kinase A (phosphoacceptor) domain AHA_3225 SM01240 AHA_3225 AHA_3227 SM00841 Elongation factor P, C-terminal AHA_3227 SM01185 AHA_3227 AHA_3232 SM00267 diguanylate cyclase AHA_3237 SM00267 diguanylate cyclase AHA_3238 SM00357 Cold shock protein domain AHA_3241 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_3244 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_3244 SM01091 Transporter associated domain AHA_3259 SM00936 Penicillin-binding protein 5, C-terminal domain AHA_3263 SM00729 Elongator protein 3, MiaB family, Radical SAM AHA_3269 SM00422 helix_turn_helix, mercury resistance AHA_3274 SM00267 diguanylate cyclase AHA_3285 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AHA_3288 SM00387 Histidine kinase-like ATPases AHA_3288 SM00388 His Kinase A (phosphoacceptor) domain AHA_3289 SM00421 helix_turn_helix, Lux Regulon AHA_3289 SM00448 cheY-homologous receiver domain AHA_3290 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_3291 SM00448 cheY-homologous receiver domain AHA_3291 SM00850 LytTr DNA-binding domain AHA_3297 SM00267 diguanylate cyclase AHA_3299 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_3299 SM00322 K homology RNA-binding domain AHA_3300 SM01387 AHA_3300 AHA_3304 SM00316 Ribosomal protein S1-like RNA-binding domain AHA_3312 SM00382 ATPases associated with a variety of cellular activities AHA_3314 SM01103 AHA_3314 AHA_3321 SM00861 Transketolase, pyrimidine binding domain AHA_3325 SM00382 ATPases associated with a variety of cellular activities AHA_3330 SM00020 Trypsin-like serine protease AHA_3342 SM00052 Putative diguanylate phosphodiesterase AHA_3342 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_3342 SM00091 PAS domain AHA_3342 SM00267 diguanylate cyclase AHA_3347 SM00878 Biotin carboxylase C-terminal domain AHA_3352 SM00829 Enoylreductase AHA_3355 SM01266 AHA_3355 AHA_3361 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHA_3364 SM00382 ATPases associated with a variety of cellular activities AHA_3365 SM00870 AHA_3365 AHA_3367 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3367 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3376 SM00382 ATPases associated with a variety of cellular activities AHA_3381 SM00852 Probable molybdopterin binding domain AHA_3382 SM00825 Beta-ketoacyl synthase AHA_3383 SM00822 AHA_3383 AHA_3385 SM00825 Beta-ketoacyl synthase AHA_3397 SM00563 Phosphate acyltransferases AHA_3402 SM00477 DNA/RNA non-specific endonuclease AHA_3402 SM00892 DNA/RNA non-specific endonuclease AHA_3404 SM01057 Eukaryotic-type carbonic anhydrase AHA_3409 SM00382 ATPases associated with a variety of cellular activities AHA_3412 SM01012 AHA_3412 AHA_3414 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AHA_3421 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AHA_3428 SM00382 ATPases associated with a variety of cellular activities AHA_3429 SM00382 ATPases associated with a variety of cellular activities AHA_3439 SM00028 Tetratricopeptide repeats AHA_3440 SM00495 Chitin-binding domain type 3 AHA_3440 SM00636 AHA_3440 AHA_3448 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3448 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3450 SM00357 Cold shock protein domain AHA_3459 SM00479 AHA_3459 AHA_3467 SM00342 helix_turn_helix, arabinose operon control protein AHA_3469 SM00052 Putative diguanylate phosphodiesterase AHA_3469 SM00091 PAS domain AHA_3469 SM00267 diguanylate cyclase AHA_3476 SM00382 ATPases associated with a variety of cellular activities AHA_3479 SM00450 Rhodanese Homology Domain AHA_3485 SM00052 Putative diguanylate phosphodiesterase AHA_3488 SM00382 ATPases associated with a variety of cellular activities AHA_3490 SM00260 Two component signalling adaptor domain AHA_3490 SM00448 cheY-homologous receiver domain AHA_3491 SM00327 von Willebrand factor (vWF) type A domain AHA_3498 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AHA_3501 SM00448 cheY-homologous receiver domain AHA_3504 SM00382 ATPases associated with a variety of cellular activities AHA_3523 SM00014 Acid phosphatase homologues AHA_3525 SM00448 cheY-homologous receiver domain AHA_3525 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_3531 SM00487 DEAD-like helicases superfamily AHA_3531 SM00490 helicase superfamily c-terminal domain AHA_3531 SM00847 Helicase associated domain (HA2) Add an annotation AHA_3540 SM00450 Rhodanese Homology Domain AHA_3545 SM00382 ATPases associated with a variety of cellular activities AHA_3557 SM00382 ATPases associated with a variety of cellular activities AHA_3561 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3569 SM00244 prohibitin homologues AHA_3571 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_3572 SM00382 ATPases associated with a variety of cellular activities AHA_3592 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_3606 SM00344 helix_turn_helix ASNC type AHA_3609 SM00347 helix_turn_helix multiple antibiotic resistance protein AHA_3611 SM00829 Enoylreductase AHA_3615 SM00642 Alpha-amylase domain AHA_3616 SM00642 Alpha-amylase domain AHA_3618 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AHA_3621 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3621 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3647 SM00382 ATPases associated with a variety of cellular activities AHA_3648 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AHA_3649 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3649 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3661 SM01152 AHA_3661 AHA_3665 SM00382 ATPases associated with a variety of cellular activities AHA_3668 SM00487 DEAD-like helicases superfamily AHA_3668 SM00490 helicase superfamily c-terminal domain AHA_3678 SM00411 bacterial (prokaryotic) histone like domain AHA_3681 SM00382 ATPases associated with a variety of cellular activities AHA_3686 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_3686 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_3686 SM00091 PAS domain AHA_3686 SM00267 diguanylate cyclase AHA_3689 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AHA_3690 SM01133 AHA_3690 AHA_3703 SM01091 Transporter associated domain AHA_3714 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AHA_3716 SM00382 ATPases associated with a variety of cellular activities AHA_3718 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AHA_3718 SM00534 ATPase domain of DNA mismatch repair MUTS family AHA_3721 SM00347 helix_turn_helix multiple antibiotic resistance protein AHA_3729 SM00382 ATPases associated with a variety of cellular activities AHA_3733 SM00986 Uracil DNA glycosylase superfamily AHA_3733 SM00987 UreE urease accessory protein, C-terminal domain AHA_3740 SM00563 Phosphate acyltransferases AHA_3746 SM00271 DnaJ molecular chaperone homology domain AHA_3755 SM00434 DNA Topoisomerase IV AHA_3756 SM00387 Histidine kinase-like ATPases AHA_3756 SM00433 TopoisomeraseII AHA_3770 SM01118 AHA_3770 AHA_3776 SM00450 Rhodanese Homology Domain AHA_3778 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_3784 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AHA_3785 SM00382 ATPases associated with a variety of cellular activities AHA_3787 SM00478 endonuclease III AHA_3787 SM00525 AHA_3787 AHA_3792 SM00062 Bacterial periplasmic substrate-binding proteins AHA_3800 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AHA_3800 SM00267 diguanylate cyclase AHA_3801 SM01130 AHA_3801 AHA_3815 SM00382 ATPases associated with a variety of cellular activities AHA_3821 SM00344 helix_turn_helix ASNC type AHA_3822 SM01266 AHA_3822 AHA_3823 SM00642 Alpha-amylase domain AHA_3825 SM00354 helix_turn _helix lactose operon repressor AHA_3828 SM00870 AHA_3828 AHA_3831 SM00851 MGS-like domain AHA_3838 SM00260 Two component signalling adaptor domain AHA_3838 SM00448 cheY-homologous receiver domain AHA_3846 SM01207 AHA_3846 AHA_3847 SM00905 Dihydroneopterin aldolase AHA_3851 SM00833 Cobalamin synthesis protein cobW C-terminal domain AHA_3855 SM00052 Putative diguanylate phosphodiesterase AHA_3858 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3858 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3859 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3864 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_3864 SM00895 AHA_3864 AHA_3865 SM00644 AHA_3865 AHA_3877 SM00957 SecA DEAD-like domain AHA_3877 SM00958 SecA preprotein cross-linking domain AHA_3880 SM00864 Tubulin/FtsZ family, GTPase domain AHA_3880 SM00865 Tubulin/FtsZ family, C-terminal domain AHA_3881 SM00842 Cell division protein FtsA AHA_3898 SM00749 bacterial OsmY and nodulation domain AHA_3908 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AHA_3909 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AHA_3924 SM00382 ATPases associated with a variety of cellular activities AHA_3928 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_3929 SM00382 ATPases associated with a variety of cellular activities AHA_3946 SM00530 Helix-turn-helix XRE-family like proteins AHA_3952 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_3952 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3954 SM00267 diguanylate cyclase AHA_3956 SM00421 helix_turn_helix, Lux Regulon AHA_3958 SM00062 Bacterial periplasmic substrate-binding proteins AHA_3962 SM00357 Cold shock protein domain AHA_3964 SM00062 Bacterial periplasmic substrate-binding proteins AHA_3964 SM00267 diguanylate cyclase AHA_3965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_3965 SM00387 Histidine kinase-like ATPases AHA_3965 SM00388 His Kinase A (phosphoacceptor) domain AHA_3966 SM00448 cheY-homologous receiver domain AHA_3966 SM00862 Transcriptional regulatory protein, C terminal AHA_3970 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AHA_3970 SM00091 PAS domain AHA_3970 SM00267 diguanylate cyclase AHA_3971 SM00342 helix_turn_helix, arabinose operon control protein AHA_3981 SM00530 Helix-turn-helix XRE-family like proteins AHA_3982 SM00345 helix_turn_helix gluconate operon transcriptional repressor AHA_3982 SM00866 AHA_3982 AHA_3987 SM00382 ATPases associated with a variety of cellular activities AHA_3989 SM00267 diguanylate cyclase AHA_3992 SM00342 helix_turn_helix, arabinose operon control protein AHA_3992 SM00871 Bacterial transcription activator, effector binding domain AHA_3994 SM01060 AHA_3994 AHA_3999 SM00014 Acid phosphatase homologues AHA_4004 SM00091 PAS domain AHA_4007 SM01120 AHA_4007 AHA_4019 SM00838 Elongation factor G C-terminus AHA_4019 SM00889 Elongation factor G, domain IV AHA_4027 SM00663 RNA polymerase I subunit A N-terminus AHA_4032 SM00649 Ribosomal protein L11/L12 AHA_4033 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AHA_4033 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AHA_4044 SM00342 helix_turn_helix, arabinose operon control protein AHA_4047 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AHA_4047 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AHA_4047 SM00493 AHA_4047 AHA_4051 SM00387 Histidine kinase-like ATPases AHA_4052 SM00448 cheY-homologous receiver domain AHA_4052 SM00862 Transcriptional regulatory protein, C terminal AHA_4059 SM00382 ATPases associated with a variety of cellular activities AHA_4059 SM00448 cheY-homologous receiver domain AHA_4061 SM00387 Histidine kinase-like ATPases AHA_4061 SM00388 His Kinase A (phosphoacceptor) domain AHA_4065 SM00116 Domain in cystathionine beta-synthase and other proteins. AHA_4066 SM00062 Bacterial periplasmic substrate-binding proteins AHA_4067 SM00344 helix_turn_helix ASNC type AHA_4070 SM00849 Metallo-beta-lactamase superfamily AHA_4071 SM00382 ATPases associated with a variety of cellular activities AHA_4071 SM01086 C-terminal, D2-small domain, of ClpB protein AHA_4073 SM00363 S4 RNA-binding domain AHA_4080 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AHA_4080 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AHA_4082 SM00342 helix_turn_helix, arabinose operon control protein AHA_4083 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_4083 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_4097 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_4097 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_4099 SM00382 ATPases associated with a variety of cellular activities AHA_4101 SM01038 Beta galactosidase small chain AHA_4102 SM00354 helix_turn _helix lactose operon repressor AHA_4111 SM00464 Found in ATP-dependent protease La (LON) AHA_4112 SM00836 DALR anticodon binding domain AHA_4112 SM01016 Arginyl tRNA synthetase N terminal dom AHA_4115 SM00382 ATPases associated with a variety of cellular activities AHA_4115 SM01086 C-terminal, D2-small domain, of ClpB protein AHA_4122 SM00924 MgtE intracellular N domain AHA_4123 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AHA_4123 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_4123 SM01358 AHA_4123 AHA_4129 SM00341 Helicase and RNase D C-terminal AHA_4129 SM00487 DEAD-like helicases superfamily AHA_4129 SM00490 helicase superfamily c-terminal domain AHA_4129 SM00956 AHA_4129 AHA_4136 SM00382 ATPases associated with a variety of cellular activities AHA_4140 SM01230 AHA_4140 AHA_4149 SM00642 Alpha-amylase domain AHA_4168 SM00984 UDP binding domain AHA_4175 SM00822 AHA_4175 AHA_4180 SM00858 AHA_4180 AHA_4192 SM00448 cheY-homologous receiver domain AHA_4192 SM00862 Transcriptional regulatory protein, C terminal AHA_4193 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AHA_4193 SM00387 Histidine kinase-like ATPases AHA_4193 SM00388 His Kinase A (phosphoacceptor) domain AHA_4195 SM00919 Malic enzyme, NAD binding domain AHA_4195 SM01274 AHA_4195 AHA_4198 SM00487 DEAD-like helicases superfamily AHA_4198 SM00490 helicase superfamily c-terminal domain AHA_4206 SM00382 ATPases associated with a variety of cellular activities AHA_4207 SM00563 Phosphate acyltransferases AHA_4209 SM00563 Phosphate acyltransferases AHA_4213 SM00062 Bacterial periplasmic substrate-binding proteins AHA_4214 SM00382 ATPases associated with a variety of cellular activities AHA_4220 SM00267 diguanylate cyclase AHA_4221 SM00422 helix_turn_helix, mercury resistance AHA_4235 SM00829 Enoylreductase AHA_4237 SM00052 Putative diguanylate phosphodiesterase AHA_4237 SM00267 diguanylate cyclase AHA_4253 SM00421 helix_turn_helix, Lux Regulon AHA_4255 SM00420 helix_turn_helix, Deoxyribose operon repressor AHA_4255 SM01134 AHA_4255 AHA_4256 SM00448 cheY-homologous receiver domain AHA_4256 SM00862 Transcriptional regulatory protein, C terminal AHA_4257 SM00387 Histidine kinase-like ATPases AHA_4257 SM00388 His Kinase A (phosphoacceptor) domain AHA_4262 SM00382 ATPases associated with a variety of cellular activities AHA_4270 SM00470 ParB-like nuclease domain AHA_4273 SM01228 AHA_4273 AHA_4276 SM00382 ATPases associated with a variety of cellular activities AHA_4277 SM00382 ATPases associated with a variety of cellular activities AHA_4282 SM01234 AHA_4282 AHA_4285 SM00382 ATPases associated with a variety of cellular activities AHA_4287 SM00062 Bacterial periplasmic substrate-binding proteins AHA_4287 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins.