locus_tag old_locus_tag gene Name start end strand product note type ID NCBI AHA_0001 AHA_0001 dnaA dnaA 223 1593 + chromosomal replication initiation protein binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself. gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0001 AHA_0002 AHA_0002 dnaN dnaN 1677 2780 + DNA polymerase III subunit beta identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663 gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0002 AHA_0003 AHA_0003 recF recF 2783 3886 + DNA replication and repair protein RecF identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00611 gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0003 AHA_0004 AHA_0004 gyrB gyrB 3883 6294 + DNA gyrase subunit B identified by similarity to SP:P06982%3B match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059 gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0004 AHA_0005 AHA_0005 AHA_0005 6409 6786 - glyoxalase identified by match to protein family HMM PF00903 gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0005 AHA_0006 AHA_0006 AHA_0006 6853 7557 - transcriptional regulator gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0006 AHA_0007 AHA_0007 AHA_0007 7792 8205 + 16 kDa heat shock protein A identified by match to protein family HMM PF00011 gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0007 AHA_0008 AHA_0008 AHA_0008 8298 8735 + 16 kDa heat shock protein A identified by match to protein family HMM PF00011 gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0008 AHA_0009 AHA_0009 avtA avtA 8809 10059 - valine--pyruvate transaminase transaminase C%3B catalyzes transamination of alanine%2C valine%2C and 2-aminobutyrate with their respective 2-keto acids%3B also catalyzes terminal step in valine biosynthesis gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0009 AHA_0010 AHA_0010 AHA_0010 10506 11330 - AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0010 AHA_0011 AHA_0011 AHA_0011 10343 10576 + hypothetical protein gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0011 AHA_0012 AHA_0012 AHA_0012 11423 12550 + multidrug resistance protein D identified by match to protein family HMM PF07690 gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0012 AHA_0013 AHA_0013 AHA_0013 12555 13238 - KDP operon transcriptional regulatory protein KdpE identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0013 AHA_0014 AHA_0014 AHA_0014 13269 15857 - sensory kinase in two-component regulatory system wtih KdpE identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF02702 gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0014 AHA_0015 AHA_0015 kdpC kdpC 15961 16488 - K+-transporting ATPase subunit C identified by match to protein family HMM PF02669%3B match to protein family HMM TIGR00681 gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0015 AHA_0016 AHA_0016 kdpB kdpB 16549 18606 - K+-transporting ATPase subunit B identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01497 gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0016 AHA_0017 AHA_0017 kdpA kdpA 18662 20344 - potassium-transporting ATPase subunit A catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0017 AHA_0018 AHA_0018 AHA_0018 20355 20432 - K+-transporting ATPase%2C F subunit KdpF gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0018 AHA_0019 AHA_0019 gor gor 20671 22020 - glutathione-disulfide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01421 gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0019 AHA_0020 AHA_0020 AHA_0020 22097 24094 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0020 AHA_0021 AHA_0021 AHA_0021 24187 27267 - acriflavin resistance plasma membrane protein identified by match to protein family HMM PF00873 gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0021 AHA_0022 AHA_0022 AHA_0022 27283 28389 - RND efflux transporter identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0022 AHA_0023 AHA_0023 AHA_0023 28422 29045 - TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0023 AHA_0024 AHA_0024 AHA_0024 29246 29322 + tRNA-Arg tRNA gene23 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0024 AHA_0025 AHA_0025 AHA_0025 29373 29448 + tRNA-His tRNA gene24 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0025 AHA_0026 AHA_0026 AHA_0026 29469 29554 + tRNA-Leu tRNA gene25 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0026 AHA_0027 AHA_0027 AHA_0027 29628 29704 + tRNA-Pro tRNA gene26 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0027 AHA_0028 AHA_0028 AHA_0028 29998 30399 + ricin-type beta-trefoil lectin domain-containing protein identified by match to protein family HMM PF00652 gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0028 AHA_0029 AHA_0029 pyk-1 pyk-1 30404 31483 - pyruvate kinase identified by match to protein family HMM PF00224%3B match to protein family HMM TIGR01064 gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0029 AHA_0030 AHA_0030 AHA_0030 31551 32888 - sugar phosphate permease identified by match to protein family HMM PF07690 gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0030 AHA_0031 AHA_0031 AHA_0031 33247 34461 + Fe3+ ABC transporter periplasmic protein identified by match to protein family HMM PF01547 gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0031 AHA_0032 AHA_0032 AHA_0032 34458 36890 + phosphoglycerate transport regulatory protein PgtB identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0032 AHA_0033 AHA_0033 AHA_0033 36874 38151 + C4-dicarboxylate transport transcriptional regulatory protein DctD identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0033 AHA_0034 AHA_0034 AHA_0034 38203 38517 + hypothetical protein gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0034 AHA_0035 AHA_0035 AHA_0035 38565 39377 - Cof family hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0035 AHA_0036 AHA_0036 AHA_0036 39471 40511 - lysophospholipase L2 identified by match to protein family HMM PF00561 gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0036 AHA_0037 AHA_0037 AHA_0037 40508 41173 - chloramphenicol acetyltransferase identified by match to protein family HMM PF00132 gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0037 AHA_0038 AHA_0038 AHA_0038 41173 41934 - tRNA guanosine-2'-O-methyltransferase specifically modifies tRNA at position G18 gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0038 AHA_0039 AHA_0039 AHA_0039 42129 44246 - guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase identified by match to protein family HMM PF01842%3B match to protein family HMM PF01966%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691 gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0039 AHA_0040 AHA_0040 rpoZ rpoZ 44384 44659 - DNA-directed RNA polymerase subunit omega promotes RNA polymerase assembly or stability%3B latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0040 AHA_0041 AHA_0041 AHA_0041 44739 45593 - guanylate kinase identified by match to protein family HMM PF00625 gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0041 AHA_0042 AHA_0042 AHA_0042 45637 46719 - lipopolysaccharide heptosyltransferase identified by match to protein family HMM PF01075 gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0042 AHA_0043 AHA_0043 kdkA kdkA 46888 47601 + 3-deoxy-D-manno-octulosonic-acid kinase catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0043 AHA_0044 AHA_0044 AHA_0044 47729 48535 + sensory box/GGDEF family protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0044 AHA_0045 AHA_0045 AHA_0045 48543 49397 - hypothetical protein identified by match to protein family HMM PF00892 gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0045 AHA_0046 AHA_0046 AHA_0046 49441 49899 + hypothetical protein gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0046 AHA_0047 AHA_0047 AHA_0047 50054 50215 - hypothetical protein gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0047 AHA_0048 AHA_0048 AHA_0048 50200 51129 - hypothetical protein identified by match to protein family HMM PF00892 gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0048 AHA_0049 AHA_0049 trpS-1 trpS-1 52144 53157 - tryptophanyl-tRNA synthetase II catalyzes a two-step reaction%2C first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0049 AHA_0050 AHA_0050 AHA_0050 51191 52165 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0050 AHA_0051 AHA_0051 AHA_0051 53349 53783 - universal stress protein A identified by match to protein family HMM PF00582 gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0051 AHA_0052 AHA_0052 AHA_0052 54250 55437 + trans-2-enoyl-CoA reductase enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0052 AHA_0053 AHA_0053 AHA_0053 55453 57243 - hypothetical protein identified by match to protein family HMM PF00990%3B match to protein family HMM PF07721%3B match to protein family HMM TIGR00254 gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0053 AHA_0054 AHA_0054 AHA_0054 57348 57977 + ferritin identified by match to protein family HMM PF00210 gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0054 AHA_0055 AHA_0055 AHA_0055 58135 59322 + hypothetical protein identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00275 gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0055 AHA_0056 AHA_0056 AHA_0056 59510 60730 - fosmidomycin resistance protein identified by match to protein family HMM PF07690 gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0056 AHA_0057 AHA_0057 AHA_0057 60918 61556 + leucine export protein LeuE identified by match to protein family HMM PF01810 gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0057 AHA_0058 AHA_0058 AHA_0058 61600 62346 - hypothetical protein gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0058 AHA_0059 AHA_0059 AHA_0059 62289 63905 - hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0059 AHA_0060 AHA_0060 AHA_0060 63908 66385 - hypothetical protein gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0060 AHA_0061 AHA_0061 AHA_0061 66437 67102 - hypothetical protein gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0061 AHA_0062 AHA_0062 matB matB 67162 67737 - fimbrillin MatB identified by similarity to GB:AAK01671.1 gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0062 AHA_0063 AHA_0063 evgA evgA 68337 68960 + positive transcription regulator EvgA identified by similarity to SP:P30854%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0063 AHA_0064 AHA_0064 AHA_0064 68963 72550 + virulence sensor protein BvgS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0064 AHA_0065 AHA_0065 AHA_0065 72586 73026 - hypothetical protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0065 AHA_0066 AHA_0066 AHA_0066 73217 74872 + sensor histidine kinase identified by match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694 gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0066 AHA_0067 AHA_0067 AHA_0067 75002 75733 + response regulator receiver domain-containing protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397 gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0067 AHA_0068 AHA_0068 AHA_0068 75855 77033 + inner membrane protein YhjX identified by match to protein family HMM PF07690 gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0068 AHA_0069 AHA_0069 purK purK 77107 78231 - phosphoribosylaminoimidazole carboxylase ATPase subunit With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0069 AHA_0070 AHA_0070 purE-1 purE-1 78228 78737 - phosphoribosylaminoimidazole carboxylase catalytic subunit identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162 gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0070 AHA_0071 AHA_0071 AHA_0071 78800 79102 - hypothetical protein gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0071 AHA_0072 AHA_0072 AHA_0072 79107 80180 - sodium bicarbonate cotransporter identified by match to protein family HMM PF05982 gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0072 AHA_0073 AHA_0073 AHA_0073 80145 81047 + regulatory protein LysR identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0073 AHA_0074 AHA_0074 AHA_0074 81312 83147 + vitamin B12 transporter BtuB identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0074 AHA_0075 AHA_0075 murI murI 83265 84059 + glutamate racemase identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00067 gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0075 AHA_0076 AHA_0076 AHA_0076 84078 84569 - RNA-binding protein identified by match to protein family HMM PF00076 gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0076 AHA_0077 AHA_0077 rrsA rrsA 85174 86723 + 16S ribosomal RNA rRNA gene76 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0077 AHA_0078 AHA_0078 AHA_0078 86944 87019 + tRNA-Glu tRNA gene77 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0078 AHA_0079 AHA_0079 rrlA rrlA 87259 90147 + 23S ribosomal RNA rRNA gene78 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0079 AHA_0080 AHA_0080 rrfA rrfA 90259 90389 + 5S ribosomal RNA rRNA gene79 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0080 AHA_0081 AHA_0081 AHA_0081 90487 90562 + tRNA-Thr tRNA gene80 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0081 AHA_0082 AHA_0082 codA codA 90960 92225 + cytosine deaminase Catalyzes the deamination of cytosine to uracil and ammonia gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0082 AHA_0083 AHA_0083 crcB crcB 92274 92690 + camphor resistance protein CrcB may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0083 AHA_0084 AHA_0084 AHA_0084 92756 93508 + ubiquinone/menaquinone biosynthesis methyltransferase UbiE identified by match to protein family HMM PF01209%3B match to protein family HMM TIGR01934 gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0084 AHA_0085 AHA_0085 AHA_0085 93517 94125 + hypothetical protein identified by similarity to GB:BAC58359.1%3B match to protein family HMM PF06843 gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0085 AHA_0086 AHA_0086 ubiB ubiB 94125 95765 + ubiquinone biosynthesis protein UbiB an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone%3B functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis%3B similar to eukaryotic proteins that exhibit kinase functions gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0086 AHA_0087 AHA_0087 tatA tatA 95806 96054 + twin arginine translocase A TatA%3B similar to TatE that is found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0087 AHA_0088 AHA_0088 tatB tatB 96058 96501 + twin arginine-targeting protein translocase TatB identified by similarity to SP:P69425%3B match to protein family HMM PF02416%3B match to protein family HMM TIGR01410 gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0088 AHA_0089 AHA_0089 tatC tatC 96498 97253 + twin arginine-targeting protein translocase TatC identified by similarity to SP:P69423%3B match to protein family HMM PF00902%3B match to protein family HMM TIGR00945 gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0089 AHA_0090 AHA_0090 AHA_0090 97365 98150 + deoxyribonuclease TatD identified by match to protein family HMM PF01026 gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0090 AHA_0091 AHA_0091 hemB hemB 98154 99173 + delta-aminolevulinic acid dehydratase catalyzes the formation of porphobilinogen from 5-aminolevulinate gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0091 AHA_0092 AHA_0092 prlC prlC 99396 101438 + oligopeptidase A identified by similarity to SP:P27298%3B match to protein family HMM PF01432 gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0092 AHA_0093 AHA_0093 AHA_0093 101643 104186 + protein MorA identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0093 AHA_0094 AHA_0094 AHA_0094 104281 105027 + hypothetical protein identified by match to protein family HMM PF04445 gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0094 AHA_0095 AHA_0095 AHA_0095 105382 106371 - hypothetical protein gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0095 AHA_0096 AHA_0096 AHA_0096 106568 108058 - guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase identified by match to protein family HMM PF02541 gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0096 AHA_0097 AHA_0097 AHA_0097 108073 109362 - ATP-dependent RNA helicase RhlB enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome%2C a multi-enzyme complex important in RNA processing and messenger RNA degradation gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0097 AHA_0098 AHA_0098 trx trx 109476 109802 + thioredoxin identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0098 AHA_0099 AHA_0099 rho rho 110010 111275 + transcription termination factor Rho An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0099 AHA_0100 AHA_0100 AHA_0100 111589 112389 + hypothetical protein gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0100 AHA_0101 AHA_0101 AHA_0101 112420 113889 + 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by match to protein family HMM PF01977%3B match to protein family HMM TIGR00148 gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0101 AHA_0102 AHA_0102 fre fre 114058 114756 + FMN reductase NAD(P)H-flavin reductase%3B catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide%3B in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0102 AHA_0103 AHA_0103 AHA_0103 114886 115143 - hypothetical protein identified by match to protein family HMM PF04380 gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0103 AHA_0104 AHA_0104 AHA_0104 115445 117862 + extracellular lipase gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0104 AHA_0105 AHA_0105 AHA_0105 118002 118835 - GlpG protein identified by match to protein family HMM PF01694 gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0105 AHA_0106 AHA_0106 AHA_0106 118832 119155 - thiosulfate sulfurtransferase GlpE identified by match to protein family HMM PF00581 gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0106 AHA_0107 AHA_0107 AHA_0107 119909 120742 - AraC family transcriptional regulator identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311 gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0107 AHA_0108 AHA_0108 AHA_0108 119226 119912 + amino acid transporter LysE identified by match to protein family HMM PF01810 gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0108 AHA_0109 AHA_0109 AHA_0109 120746 121447 - high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF identified by match to protein family HMM PF00005 gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0109 AHA_0110 AHA_0110 livG livG 121458 122231 - leucine/isoleucine/valine transporter ATP-binding subunit Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0110 AHA_0111 AHA_0111 livM livM 122228 123499 - leucine/isoleucine/valine transporter permease subunit Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0111 AHA_0112 AHA_0112 AHA_0112 123496 124422 - high-affinity branched-chain amino acid transport system permeaseprotein LivH identified by match to protein family HMM PF02653 gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0112 AHA_0113 AHA_0113 AHA_0113 124487 125590 - Leu/Ile/Val-binding protein identified by match to protein family HMM PF01094 gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0113 AHA_0114 AHA_0114 AHA_0114 126044 127048 + ribose operon repressor identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0114 AHA_0115 AHA_0115 AHA_0115 127118 128437 - maltose-6'-phosphate glucosidase identified by match to protein family HMM PF02056 gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0115 AHA_0116 AHA_0116 AHA_0116 128440 130026 - PTS system maltose-specific transporter subunit IICB identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR00852%3B match to protein family HMM TIGR02005 gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0116 AHA_0117 AHA_0117 AHA_0117 130311 131018 + GntR family transcriptional regulator identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702 gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0117 AHA_0118 AHA_0118 AHA_0118 131099 132625 - anaerobic nitric oxide reductase transcriptional regulator Required for the expression of anaerobic nitric oxide (NO) reductase%3B acts as a transcriptional activator for the norVW operon gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0118 AHA_0119 AHA_0119 norV norV 132796 134283 + anaerobic nitric oxide reductase flavorubredoxin detoxifies nitric oxide using NADH gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0119 AHA_0120 AHA_0120 norW norW 134280 135446 + nitric oxide reductase catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0120 AHA_0121 AHA_0121 AHA_0121 135498 135839 + tellurite resistance protein TehB gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0121 AHA_0122 AHA_0122 AHA_0122 135961 137178 + (Fe-S)-binding protein identified by match to protein family HMM PF00037 gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0122 AHA_0123 AHA_0123 AHA_0123 137466 138692 + low affinity tryptophan permease identified by match to protein family HMM PF03222%3B match to protein family HMM TIGR00837 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0123 AHA_0124 AHA_0124 AHA_0124 138783 139262 - phenylalanyl-tRNA synthetase subunit beta gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0124 AHA_0125 AHA_0125 AHA_0125 139376 139780 - hypothetical protein identified by similarity to SP:P76002 gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0125 AHA_0126 AHA_0126 AHA_0126 140006 140512 + kinase gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0126 AHA_0127 AHA_0127 glyS glyS 141378 143447 - glycyl-tRNA synthetase subunit beta glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0127 AHA_0128 AHA_0128 glyQ glyQ 143457 144380 - glycyl-tRNA synthetase subunit alpha glycine--tRNA ligase alpha chain%3B GlyRS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0128 AHA_0129 AHA_0129 AHA_0129 144590 145171 + DNA-3-methyladenine glycosylase I identified by match to protein family HMM PF03352%3B match to protein family HMM TIGR00624 gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0129 AHA_0130 AHA_0130 AHA_0130 145248 147284 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF01814%3B match to protein family HMM TIGR02481 gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0130 AHA_0131 AHA_0131 AHA_0131 147537 148193 + outer membrane lipoprotein identified by match to protein family HMM PF00691%3B match to protein family HMM PF05433 gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0131 AHA_0132 AHA_0132 AHA_0132 148461 148808 - endoribonuclease L-PSP identified by match to protein family HMM PF01042 gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0132 AHA_0133 AHA_0133 AHA_0133 148830 149078 - sulfur transfer protein SirA TusA%3B transfers sulfur to TusBCD complex%3B involved in thiouridation of U34 position of some tRNAs gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0133 AHA_0134 AHA_0134 AHA_0134 149247 149438 + hypothetical protein gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0134 AHA_0135 AHA_0135 AHA_0135 149511 150749 - sugar ABC transporter periplasmic protein identified by match to protein family HMM PF01547 gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0135 AHA_0136 AHA_0136 AHA_0136 150754 152169 - signal transduction histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0136 AHA_0137 AHA_0137 AHA_0137 152251 152985 - protein GltR identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0137 AHA_0138 AHA_0138 fadA fadA 153298 154461 - 3-ketoacyl-CoA thiolase FadA%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadB%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0138 AHA_0139 AHA_0139 fadB fadB 154483 156630 - multifunctional fatty acid oxidation complex subunit alpha includes enoyl-CoA hydratase%2C delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%2C 3-hydroxyacyl-CoA dehydrogenase%2C and 3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities%3B forms a heterotetramer with FadA%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0139 AHA_0140 AHA_0140 AHA_0140 156833 158770 - acetoacetyl-CoA synthetase AcsA%3B in Sinorhizobium meliloti this enzyme is required for acetoacetate activation%3B similar to acetyl-CoA synthase gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0140 AHA_0141 AHA_0141 pepQ pepQ 158961 160283 + proline dipeptidase catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0141 AHA_0142 AHA_0142 AHA_0142 160283 160900 + hypothetical protein identified by similarity to GB:BAB38199.1%3B match to protein family HMM PF01205%3B match to protein family HMM TIGR00257 gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0142 AHA_0143 AHA_0143 trkH trkH 160937 162394 + Trk system potassium uptake protein TrkH identified by similarity to SP:P21166%3B match to protein family HMM PF02386%3B match to protein family HMM TIGR00933 gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0143 AHA_0144 AHA_0144 AHA_0144 162333 162926 + protoporphyrinogen oxidase gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0144 AHA_0145 AHA_0145 rrsB rrsB 163372 164921 + 16S ribosomal RNA rRNA gene144 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0145 AHA_0146 AHA_0146 AHA_0146 165116 165191 + tRNA-Glu tRNA gene145 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0146 AHA_0147 AHA_0147 rrlB rrlB 165428 168316 + 23S ribosomal RNA rRNA gene146 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0147 AHA_0148 AHA_0148 rrfB rrfB 168426 168556 + 5S ribosomal RNA rRNA gene147 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0148 AHA_0149 AHA_0149 AHA_0149 168638 171214 - acyl-CoA synthetase identified by match to protein family HMM PF00583%3B match to protein family HMM PF02629 gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0149 AHA_0150 AHA_0150 AHA_0150 171287 171478 - hypothetical protein gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0150 AHA_0151 AHA_0151 ilvY ilvY 172509 173402 - DNA-binding transcriptional regulator IlvY participates in controlling several genes involved in isoleucine and valine biosynthesis%3B activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0151 AHA_0152 AHA_0152 AHA_0152 171648 172520 + hypothetical protein gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0152 AHA_0153 AHA_0153 ilvC ilvC 173624 175105 + ketol-acid reductoisomerase catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0153 AHA_0154 AHA_0154 pgi pgi 175254 176903 - glucose-6-phosphate isomerase functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0154 AHA_0155 AHA_0155 AHA_0155 177320 177508 + phage lysis protein Y%2C holin gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0155 AHA_0156 AHA_0156 AHA_0156 177635 178471 - small-conductance mechanosensitive channel identified by match to protein family HMM PF00924%3B match to protein family HMM PF05552 gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0156 AHA_0157 AHA_0157 slmA slmA 178658 179254 - nucleoid occlusion protein FtsZ binding protein%3B synthetically lethal with a defect in the Min system%3B this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0157 AHA_0158 AHA_0158 dut dut 179324 179782 - deoxyuridine 5'-triphosphate nucleotidohydrolase catalyzes the formation of dUMP from dUTP gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0158 AHA_0159 AHA_0159 coaBC coaBC 179823 181025 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase identified by similarity to SP:P24285%3B match to protein family HMM PF02441%3B match to protein family HMM PF04127%3B match to protein family HMM TIGR00521 gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0159 AHA_0160 AHA_0160 radC radC 181173 181847 + DNA repair protein RadC Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0160 AHA_0161 AHA_0161 rpmB rpmB 181984 182220 + 50S ribosomal protein L28 required for 70S ribosome assembly gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0161 AHA_0162 AHA_0162 rpmG rpmG 182232 182399 + 50S ribosomal protein L33 in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0162 AHA_0163 AHA_0163 AHA_0163 182493 182948 + hypothetical protein gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0163 AHA_0164 AHA_0164 mutM mutM 182978 183790 + formamidopyrimidine-DNA glycosylase Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0164 AHA_0165 AHA_0165 AHA_0165 183969 184850 + hypothetical protein identified by match to protein family HMM PF04393 gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0165 AHA_0166 AHA_0166 coaD coaD 184904 185386 - phosphopantetheine adenylyltransferase Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0166 AHA_0167 AHA_0167 AHA_0167 185610 186653 + heptosyltransferase identified by match to protein family HMM PF01075 gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0167 AHA_0168 AHA_0168 AHA_0168 186723 187511 - glycosyl transferase family protein identified by match to protein family HMM PF00535 gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0168 AHA_0169 AHA_0169 rfaF rfaF 187753 188868 + lipopolysaccharide heptosyltransferase II identified by match to protein family HMM PF01075%3B match to protein family HMM TIGR02195 gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0169 AHA_0170 AHA_0170 waaA waaA 188870 190135 + 3-deoxy-D-manno-octulosonic-acid transferase catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0170 AHA_0171 AHA_0171 ulaA ulaA 190206 191462 - PTS system ascorbate-specific transporter subunit IIC membrane component%3B functions with enzymes IIB (sgaB%3B ulaB) and IIA (sgaA%3B ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate%3B sgaTBA are regulated by yifQ as well as Crp and Fnr gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0171 AHA_0172 AHA_0172 AHA_0172 191523 191846 - PTS system mannitol-specific transporter subunit IIB identified by match to protein family HMM PF02302 gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0172 AHA_0173 AHA_0173 AHA_0173 191843 192286 - ascorbate-specific phosphotransferase enzyme IIA component identified by match to protein family HMM PF00359 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0173 AHA_0174 AHA_0174 AHA_0174 192539 193561 + HTH-type transcriptional regulator GntR identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0174 AHA_0175 AHA_0175 AHA_0175 193591 194571 + quinone oxidoreductase YhdH/YhfP family identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02823 gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0175 AHA_0176 AHA_0176 AHA_0176 194616 194765 + hypothetical protein gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0176 AHA_0177 AHA_0177 AHA_0177 194898 195239 + hypothetical protein gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0177 AHA_0178 AHA_0178 AHA_0178 195253 195471 - hypothetical protein gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0178 AHA_0179 AHA_0179 fliL-1 fliL-1 195529 195963 - flagellar basal body-associated protein FliL identified by match to protein family HMM PF03748 gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0179 AHA_0180 AHA_0180 AHA_0180 196109 196645 + chorismate--pyruvate lyase identified by match to protein family HMM PF04345 gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0180 AHA_0181 AHA_0181 ubiA ubiA 196642 197505 + 4-hydroxybenzoate octaprenyltransferase catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate%2C as part of the ubiquinone biosynthesis pathway gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0181 AHA_0182 AHA_0182 plsB plsB 197570 199993 - glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553 gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0182 AHA_0183 AHA_0183 lexA lexA 200198 200821 + LexA repressor Represses a number of genes involved in the response to DNA damage gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0183 AHA_0184 AHA_0184 AHA_0184 201261 201548 + hypothetical protein gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0184 AHA_0185 AHA_0185 AHA_0185 201552 201671 - hypothetical protein gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0185 AHA_0186 AHA_0186 AHA_0186 201710 202396 + SCO1/SenC family protein identified by match to protein family HMM PF02630 gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0186 AHA_0187 AHA_0187 AHA_0187 202386 203804 + DNA-damage-inducible protein F identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0187 AHA_0188 AHA_0188 AHA_0188 203833 204339 - RNA methyltransferase identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00185 gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0188 AHA_0189 AHA_0189 cpxA cpxA 204372 205727 - sensor histidine kinase CpxA identified by similarity to SP:P08336%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0189 AHA_0190 AHA_0190 cpxR cpxR 205724 206419 - transcriptional regulatory protein CpxR identified by similarity to SP:P16244%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0190 AHA_0191 AHA_0191 fieF fieF 206506 207417 + cation-efflux pump FieF identified by similarity to SP:P69380%3B match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0191 AHA_0192 AHA_0192 cysE cysE 207426 208205 + serine acetyltransferase catalyzes the O-acetylation of serine gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0192 AHA_0193 AHA_0193 AHA_0193 208227 209507 + hypothetical protein gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0193 AHA_0194 AHA_0194 AHA_0194 209553 209951 + transcriptional regulator identified by match to protein family HMM PF06005 gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0194 AHA_0195 AHA_0195 AHA_0195 210025 210675 - isoprenoid biosynthesis protein with amidotransferase-like domain identified by match to protein family HMM PF01965 gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0195 AHA_0196 AHA_0196 polA polA 211076 213829 + DNA polymerase I identified by match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593 gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0196 AHA_0197 AHA_0197 AHA_0197 213909 214448 - carbonic anhydrase identified by match to protein family HMM PF00132 gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0197 AHA_0198 AHA_0198 rrsC rrsC 214907 216456 + 16S ribosomal RNA rRNA gene197 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0198 AHA_0199 AHA_0199 AHA_0199 216523 216599 + tRNA-Ile tRNA gene198 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0199 AHA_0200 AHA_0200 AHA_0200 216610 216685 + tRNA-Ala tRNA gene199 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0200 AHA_0201 AHA_0201 rrlC rrlC 216926 219814 + 23S ribosomal RNA rRNA gene200 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0201 AHA_0201a AHA_0201a AHA_0201a 219923 220053 + 5S ribosomal RNA rRNA gene201 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0201a AHA_0202 AHA_0202 AHA_0202 220152 220227 + tRNA-Thr tRNA gene202 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0202 AHA_0203 AHA_0203 rrfC rrfC 220249 220368 + 5S ribosomal RNA rRNA gene203 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0203 AHA_0204 AHA_0204 AHA_0204 220520 221485 + DNA-binding transcriptional repressor EbgR identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0204 AHA_0205 AHA_0205 ebgA ebgA 221807 224881 + cryptic beta-D-galactosidase subunit alpha in Escherichia coli this is the second beta-galactosidase system gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0205 AHA_0206 AHA_0206 AHA_0206 224878 225333 + evolved beta-D-galactosidase%2C beta subunit%3B cryptic gene identified by match to protein family HMM PF04074 gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0206 AHA_0207 AHA_0207 AHA_0207 225436 226881 + inner membrane transporter YgjI identified by match to protein family HMM PF00324 gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0207 AHA_0208 AHA_0208 AHA_0208 226910 227296 + hypothetical protein identified by match to protein family HMM PF01588 gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0208 AHA_0209 AHA_0209 AHA_0209 227463 228899 + amino acid permease identified by match to protein family HMM PF00324 gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0209 AHA_0210 AHA_0210 AHA_0210 229111 230082 + sodium/bile acid symporter family protein gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0210 AHA_0211 AHA_0211 AHA_0211 230140 232290 - generic methyltransferase identified by match to protein family HMM PF03781 gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0211 AHA_0212 AHA_0212 AHA_0212 232655 233377 + hypothetical protein gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0212 AHA_0213 AHA_0213 AHA_0213 233431 234267 - esterase YeiG identified by match to protein family HMM PF00756%3B match to protein family HMM TIGR02821 gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0213 AHA_0214 AHA_0214 AHA_0214 234317 235444 - alcohol dehydrogenase identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02818 gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0214 AHA_0215 AHA_0215 AHA_0215 235564 236469 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0215 AHA_0216 AHA_0216 AHA_0216 236526 237491 - ABC transporter permease identified by match to protein family HMM PF02653 gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0216 AHA_0217 AHA_0217 AHA_0217 237494 238609 - ABC transporter permease identified by match to protein family HMM PF02653 gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0217 AHA_0218 AHA_0218 AHA_0218 238692 240272 - ABC transporter nucleotide binding/ATPase (sugar/ribonucleotide) identified by match to protein family HMM PF00005 gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0218 AHA_0219 AHA_0219 AHA_0219 240356 241459 - membrane lipoprotein identified by match to protein family HMM PF02608 gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0219 AHA_0220 AHA_0220 uvrD uvrD 241787 243958 + DNA helicase II identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR01075 gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0220 AHA_0221 AHA_0221 AHA_0221 244058 245614 - hypothetical protein gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0221 AHA_0222 AHA_0222 AHA_0222 245611 246813 - hypothetical protein gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0222 AHA_0223 AHA_0223 AHA_0223 246810 247247 - lipoprotein gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0223 AHA_0224 AHA_0224 AHA_0224 247422 247934 + hypothetical protein gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0224 AHA_0225 AHA_0225 AHA_0225 248027 249187 - hypothetical protein gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0225 AHA_0226 AHA_0226 AHA_0226 249679 249876 - hypothetical protein gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0226 AHA_0227 AHA_0227 AHA_0227 250157 250657 + hypothetical protein gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0227 AHA_0228 AHA_0228 AHA_0228 250746 251195 - hypothetical protein gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0228 AHA_0229 AHA_0229 AHA_0229 251276 251788 - hemolysin identified by match to protein family HMM PF07883 gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0229 AHA_0230 AHA_0230 AHA_0230 251886 252542 - hypothetical protein gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0230 AHA_0231 AHA_0231 AHA_0231 252751 253488 + hypothetical protein identified by match to protein family HMM PF06206 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0231 AHA_0232 AHA_0232 AHA_0232 253498 254166 - LysR family transcriptional regulator identified by match to protein family HMM PF03466 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0232 AHA_0233 AHA_0233 AHA_0233 254191 254382 - transcriptional regulatory protein identified by match to protein family HMM PF00126 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0233 AHA_0234 AHA_0234 AHA_0234 254484 255104 + lysine exporter protein identified by match to protein family HMM PF01810 gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0234 AHA_0235 AHA_0235 AHA_0235 255180 256424 + hypothetical protein gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0235 AHA_0236 AHA_0236 AHA_0236 256511 257545 - hypothetical protein identified by match to protein family HMM PF04143 gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0236 AHA_0237 AHA_0237 AHA_0237 257746 259491 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0237 AHA_0238 AHA_0238 mgtA mgtA 260599 263367 + magnesium-translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01524 gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0238 AHA_0239 AHA_0239 AHA_0239 263467 264210 - amino acid transporter LysE identified by match to protein family HMM PF01810 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0239 AHA_0240 AHA_0240 AHA_0240 264194 265012 - AraC family transcriptional regulator identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311 gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0240 AHA_0241 AHA_0241 rarD-1 rarD-1 265080 265982 - RarD protein identified by match to protein family HMM PF00892%3B match to protein family HMM TIGR00688 gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0241 AHA_0242 AHA_0242 AHA_0242 266108 266398 - hypothetical protein gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0242 AHA_0243 AHA_0243 AHA_0243 266407 267903 - aldehyde dehydrogenase identified by match to protein family HMM PF00171 gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0243 AHA_0244 AHA_0244 AHA_0244 268165 268707 - DNA-binding protein identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883 gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0244 AHA_0245 AHA_0245 AHA_0245 268893 270224 + beta alanine--pyruvate transaminase catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0245 AHA_0246 AHA_0246 mmsA-1 mmsA-1 270323 271819 + methylmalonate-semialdehyde dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01722 gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0246 AHA_0247 AHA_0247 AHA_0247 271904 272659 + glutamine amidotransferase identified by match to protein family HMM PF00117 gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0247 AHA_0248 AHA_0248 ald ald 272656 273771 + alanine dehydrogenase identified by match to protein family HMM PF01262%3B match to protein family HMM PF01488%3B match to protein family HMM PF05222%3B match to protein family HMM TIGR00518 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0248 AHA_0249 AHA_0249 AHA_0249 273891 274730 + carbohydrate kinase identified by match to protein family HMM PF00294 gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0249 AHA_0250 AHA_0250 AHA_0250 275030 275482 + Rrf2 family protein identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0250 AHA_0251 AHA_0251 AHA_0251 275541 276053 - NapF protein identified by match to protein family HMM PF00037 gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0251 AHA_0252 AHA_0252 AHA_0252 276180 276407 + hypothetical protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0252 AHA_0253 AHA_0253 AHA_0253 276404 277744 + DNA recombination protein RmuC identified by match to protein family HMM PF02646 gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0253 AHA_0254 AHA_0254 AHA_0254 277850 279292 - TrkH protein identified by match to protein family HMM PF02386%3B match to protein family HMM TIGR00933 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0254 AHA_0255 AHA_0255 trkA trkA 279389 280765 - potassium transporter peripheral membrane protein involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0255 AHA_0256 AHA_0256 sun sun 280913 282205 - ribosomal RNA small subunit methyltransferase B identified by match to protein family HMM PF01029%3B match to protein family HMM PF01189%3B match to protein family HMM TIGR00563 gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0256 AHA_0257 AHA_0257 fmt fmt 282262 283206 - methionyl-tRNA formyltransferase identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460 gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0257 AHA_0258 AHA_0258 def def 283219 283731 - peptide deformylase cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins%3B binds iron(2+) gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0258 AHA_0259 AHA_0259 AHA_0259 283840 284928 + LysM domain-containing protein identified by match to protein family HMM PF01476 gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0259 AHA_0260 AHA_0260 dprA dprA 284930 286045 + DNA protecting protein DprA identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732 gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0260 AHA_0261 AHA_0261 AHA_0261 286038 286511 + hypothetical protein identified by match to protein family HMM PF04361 gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0261 AHA_0262 AHA_0262 AHA_0262 286567 287124 + topoisomerase DNA-binding C4 zinc finger domain-containing protein identified by match to protein family HMM PF01396 gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0262 AHA_0263 AHA_0263 purE-2 purE-2 287199 287702 + phosphoribosylaminoimidazole carboxylase catalytic subunit identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162 gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0263 AHA_0264 AHA_0264 AHA_0264 287837 288397 + Sua5/YciO/YrdC family protein identified by match to protein family HMM PF01300 gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0264 AHA_0265 AHA_0265 hemF hemF 288492 289400 + coproporphyrinogen III oxidase catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0265 AHA_0266 AHA_0266 aroE aroE 289504 290325 + shikimate 5-dehydrogenase AroE%3B catalyzes the conversion of shikimate to 3-dehydroshikimate gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0266 AHA_0267 AHA_0267 AHA_0267 290322 290582 + hypothetical protein identified by match to protein family HMM PF07369 gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0267 AHA_0268 AHA_0268 engB engB 291373 292023 - ribosome biogenesis GTP-binding protein YsxC binds guanine nucleotides%3B in Escherichia coli depletion results in defective cell division and filamentation%3B in Bacillus subtilis this gene is essential gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0268 AHA_0269 AHA_0269 AHA_0269 292127 292783 + cytochrome c4 identified by match to protein family HMM PF00034 gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0269 AHA_0270 AHA_0270 AHA_0270 293413 294189 + hypothetical protein identified by match to protein family HMM PF04220 gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0270 AHA_0271 AHA_0271 AHA_0271 294201 294641 + hypothetical protein gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0271 AHA_0272 AHA_0272 hemN hemN 294669 296042 + coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0272 AHA_0273 AHA_0273 add-1 add-1 296111 297112 - adenosine deaminase catalyzes the formation of inosine from adenosine gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0273 AHA_0274 AHA_0274 ntrC ntrC 297254 298672 - nitrogen regulation protein NR(I) identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM TIGR01818 gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0274 AHA_0275 AHA_0275 glnL glnL 298682 299737 - nitrogen regulation protein NR(II) sensory histidine kinase in two-component regulatory system with GlnG%3B acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0275 AHA_0276 AHA_0276 AHA_0276 299818 300399 - hypothetical protein identified by similarity to GB:AAN57435.1 gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0276 AHA_0277 AHA_0277 glnA glnA 300492 301901 - glutamine synthetase identified by match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653 gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0277 AHA_0278 AHA_0278 typA typA 302253 304064 + GTP-binding protein TypA identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01394 gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0278 AHA_0279 AHA_0279 rbn rbn 304238 305110 + ribonuclease BN RNase BN%3B required for 3' maturation of certain phage T4-encoded tRNAs%3B forms a dimer%3B specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence%3B 3' to 5' exoribonuclease gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0279 AHA_0280 AHA_0280 AHA_0280 305617 306393 - hypothetical protein gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0280 AHA_0281 AHA_0281 dtd dtd 305191 305628 + D-tyrosyl-tRNA(Tyr) deacylase identified by match to protein family HMM PF02580%3B match to protein family HMM TIGR00256 gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0281 AHA_0282 AHA_0282 AHA_0282 306468 307376 + acetyltransferase identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR02447 gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0282 AHA_0283 AHA_0283 AHA_0283 307439 309505 - AsmA family protein identified by match to protein family HMM PF05170 gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0283 AHA_0284 AHA_0284 recG recG 309648 311720 - ATP-dependent DNA helicase RecG catalyzes branch migration in Holliday junction intermediates gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0284 AHA_0285 AHA_0285 pssA pssA 311897 313264 - phosphatidylserine synthase catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine%3B bounds to the ribosome gene gene285 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0285 AHA_0286 AHA_0286 AHA_0286 313393 314733 - low affinity gluconate transporter identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00791 gene gene286 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0286 AHA_0287 AHA_0287 aroK-1 aroK-1 314979 315488 + shikimate kinase identified by match to protein family HMM PF01202%3B match to protein family HMM TIGR01313 gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0287 AHA_0288 AHA_0288 edd edd 315485 317281 + phosphogluconate dehydratase catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0288 AHA_0289 AHA_0289 eda eda 317302 317943 + 2-dehydro-3-deoxyphosphogluconate aldolase identified by match to protein family HMM PF01081%3B match to protein family HMM TIGR01182 gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0289 AHA_0290 AHA_0290 AHA_0290 318041 319048 - HTH-type transcriptional regulator GntR identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0290 AHA_0291 AHA_0291 AHA_0291 319139 319789 + hypothetical protein identified by match to protein family HMM PF00805 gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0291 AHA_0292 AHA_0292 yibP yibP 319911 321221 - M23B family non-peptidase identified by match to protein family HMM PF01551 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0292 AHA_0293 AHA_0293 gpmI gpmI 321231 322955 - phosphoglyceromutase catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0293 AHA_0294 AHA_0294 AHA_0294 323086 323517 + rhodanese domain-containing protein identified by match to protein family HMM PF00581 gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0294 AHA_0295 AHA_0295 secB secB 323565 324035 + preprotein translocase subunit SecB molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0295 AHA_0296 AHA_0296 gpsA gpsA 324038 325042 + NAD(P)H-dependent glycerol-3-phosphate dehydrogenase catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0296 AHA_0297 AHA_0297 gntY gntY 325126 325704 - DNA uptake protein cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0297 AHA_0298 AHA_0298 AHA_0298 325785 326513 - comF family protein gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0298 AHA_0299 AHA_0299 bioH bioH 326550 327314 + pimeloyl-BioC--CoA transferase BioH identified by match to protein family HMM PF00561%3B match to protein family HMM TIGR01738 gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0299 AHA_0300 AHA_0300 AHA_0300 327386 327619 + flagellar hook protein FlgE identified by match to protein family HMM PF06429 gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0300 AHA_0301 AHA_0301 AHA_0301 327621 328418 + hypothetical protein gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0301 AHA_0302 AHA_0302 AHA_0302 328514 328792 + hypothetical protein gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0302 AHA_0303 AHA_0303 AHA_0303 328848 331352 - S1 RNA-binding domain-containing protein identified by match to protein family HMM PF00575 gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0303 AHA_0304 AHA_0304 greB greB 331424 331897 - transcription elongation factor GreB necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0304 AHA_0305 AHA_0305 AHA_0305 332134 332853 + transcriptional regulator OmpR identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0305 AHA_0306 AHA_0306 envZ envZ 332859 334160 + osmolarity sensor protein membrane-localized osmosensor%3B histidine kinase%3B in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0306 AHA_0307 AHA_0307 AHA_0307 334196 335110 - drug/metabolite exporter family protein identified by match to protein family HMM PF00892 gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0307 AHA_0308 AHA_0308 rpsJ rpsJ 335374 335778 + 30S ribosomal protein S10 identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049 gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0308 AHA_0309 AHA_0309 rplC rplC 335801 336433 + 50S ribosomal protein L3 binds directly near the 3' end of the 23S rRNA%2C where it nucleates assembly of the 50S subunit%3B essential for peptidyltransferase activity%3B mutations in this gene confer resistance to tiamulin gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0309 AHA_0310 AHA_0310 rplD rplD 336451 337056 + 50S ribosomal protein L4 L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0310 AHA_0311 AHA_0311 rplW rplW 337053 337355 + 50S ribosomal protein L23 binds third domain of 23S rRNA and protein L29%3B part of exit tunnel gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0311 AHA_0312 AHA_0312 rplB rplB 337371 338192 + 50S ribosomal protein L2 one of the primary rRNA-binding proteins%3B required for association of the 30S and 50S subunits to form the 70S ribosome%2C for tRNA binding and peptide bond formation gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0312 AHA_0313 AHA_0313 rpsS rpsS 338215 338493 + 30S ribosomal protein S19 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0313 AHA_0314 AHA_0314 rplV rplV 338504 338848 + 50S ribosomal protein L22 binds specifically to 23S rRNA during the early stages of 50S assembly%3B makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome%3B mutations in this gene result in erythromycin resistance%3B located near peptidyl-transferase center gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0314 AHA_0315 AHA_0315 rpsC rpsC 338852 339565 + 30S ribosomal protein S3 identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009 gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0315 AHA_0316 AHA_0316 rplP rplP 339579 339992 + 50S ribosomal protein L16 located in the peptidyl transferase center and may be involved in peptidyl transferase activity%3B similar to archaeal L10e gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0316 AHA_0317 AHA_0317 rpmC rpmC 339989 340183 + 50S ribosomal protein L29 one of the stabilizing components for the large ribosomal subunit gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0317 AHA_0318 AHA_0318 rpsQ rpsQ 340183 340431 + 30S ribosomal protein S17 primary binding protein%3B helps mediate assembly%3B involved in translation fidelity gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0318 AHA_0319 AHA_0319 rplN rplN 340579 340947 + 50S ribosomal protein L14 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0319 AHA_0320 AHA_0320 rplX rplX 340959 341276 + 50S ribosomal protein L24 assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0320 AHA_0321 AHA_0321 rplE rplE 341290 341829 + 50S ribosomal protein L5 part of 50S and 5S/L5/L18/L25 subcomplex%3B contacts 5S rRNA and P site tRNA%3B forms a bridge to the 30S subunit in the ribosome by binding to S13 gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0321 AHA_0322 AHA_0322 rpsN rpsN 341840 342145 + 30S ribosomal protein S14 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0322 AHA_0323 AHA_0323 rpsH rpsH 342167 342559 + 30S ribosomal protein S8 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0323 AHA_0324 AHA_0324 rplF rplF 342573 343106 + 50S ribosomal protein L6 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein%3B RNA-binding appears to be in the C-terminal domain%3B mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain%3B it has been localized to a region between the base of the L7/L12 stalk and the central protuberance gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0324 AHA_0325 AHA_0325 rplR rplR 343116 343469 + 50S ribosomal protein L18 binds 5S rRNA along with protein L5 and L25 gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0325 AHA_0326 AHA_0326 rpsE rpsE 343484 343984 + 30S ribosomal protein S5 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body%3B contacts S4 and S8%3B with S4 and S12 plays a role in translational accuracy%3B mutations in this gene result in spectinomycin resistance gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0326 AHA_0327 AHA_0327 rpmD rpmD 343991 344170 + 50S ribosomal protein L30 L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7 gene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0327 AHA_0328 AHA_0328 rplO rplO 344173 344610 + 50S ribosomal protein L15 late assembly protein gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0328 AHA_0329 AHA_0329 secY secY 344619 345947 + preprotein translocase subunit SecY forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0329 AHA_0330 AHA_0330 rpsM rpsM 346228 346584 + 30S ribosomal protein S13 located at the top of the head of the 30S subunit%2C it contacts several helices of the 16S rRNA%3B makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5%3B contacts P-site tRNA gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0330 AHA_0331 AHA_0331 rpsK rpsK 346599 346988 + 30S ribosomal protein S11 located on the platform of the 30S subunit%2C it bridges several disparate RNA helices of the 16S rRNA%3B forms part of the Shine-Dalgarno cleft in the 70S ribosome%3B interacts with S7 and S18 and IF-3 gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0331 AHA_0332 AHA_0332 rpsD rpsD 347028 347648 + 30S ribosomal protein S4 identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017 gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0332 AHA_0333 AHA_0333 rpoA rpoA 347674 348663 + DNA-directed RNA polymerase subunit alpha catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0333 AHA_0334 AHA_0334 rplQ rplQ 348707 349090 + 50S ribosomal protein L17 is a component of the macrolide binding site in the peptidyl transferase center gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0334 AHA_0335 AHA_0335 rrsD rrsD 349946 351495 + 16S ribosomal RNA rRNA gene335 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0335 AHA_0336 AHA_0336 AHA_0336 351690 351765 + tRNA-Glu tRNA gene336 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0336 AHA_0337 AHA_0337 rrlD rrlD 352002 354890 + 23S ribosomal RNA rRNA gene337 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0337 AHA_0338 AHA_0338 rrfD rrfD 354966 355085 + 5S ribosomal RNA rRNA gene338 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0338 AHA_0339 AHA_0339 AHA_0339 355180 355256 + tRNA-Asp tRNA gene339 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0339 AHA_0340 AHA_0340 AHA_0340 356544 357545 - hypothetical protein gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0340 AHA_0341 AHA_0341 AHA_0341 357834 358220 - SirB family protein identified by match to protein family HMM PF04247 gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0341 AHA_0342 AHA_0342 kefB kefB 358217 360073 - glutathione-regulated potassium-efflux system protein KefB identified by similarity to SP:P45522%3B match to protein family HMM PF00999%3B match to protein family HMM PF02254%3B match to protein family HMM TIGR00932 gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0342 AHA_0343 AHA_0343 AHA_0343 360144 360824 - modulator of glutathione-dependent potassium efflux system identified by match to protein family HMM PF02525 gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0343 AHA_0344 AHA_0344 AHA_0344 360821 361717 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0344 AHA_0345 AHA_0345 AHA_0345 361687 362529 + clavaldehyde dehydrogenase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0345 AHA_0346 AHA_0346 AHA_0346 362617 362940 + hypothetical protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0346 AHA_0347 AHA_0347 AHA_0347 362990 363421 + hypothetical protein identified by match to protein family HMM PF04214 gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0347 AHA_0348 AHA_0348 AHA_0348 363580 365799 + protease II identified by match to protein family HMM PF00326%3B match to protein family HMM PF02897 gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0348 AHA_0349 AHA_0349 AHA_0349 366071 367186 + TRAP transporter solute receptor TAXI family protein identified by match to protein family HMM TIGR02122 gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0349 AHA_0350 AHA_0350 AHA_0350 367289 369841 + TRAP transporter%2C 4TM/12TM fusion protein identified by match to protein family HMM PF06808%3B match to protein family HMM TIGR02123 gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0350 AHA_0351 AHA_0351 AHA_0351 369900 370010 - hypothetical protein gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0351 AHA_0352 AHA_0352 AHA_0352 370032 370184 - hypothetical protein gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0352 AHA_0353 AHA_0353 AHA_0353 370361 370987 + hypothetical protein identified by match to protein family HMM PF07947 gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0353 AHA_0354 AHA_0354 AHA_0354 371078 372631 - multidrug resistance protein B identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711 gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0354 AHA_0355 AHA_0355 AHA_0355 372631 373683 - HlyD family secretion protein identified by match to protein family HMM PF00529 gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0355 AHA_0356 AHA_0356 AHA_0356 373780 374682 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0356 AHA_0357 AHA_0357 AHA_0357 374739 375053 + hypothetical protein gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0357 AHA_0358 AHA_0358 AHA_0358 375068 376387 - proton/glutamate symporter identified by match to protein family HMM PF00375 gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0358 AHA_0359 AHA_0359 AHA_0359 376422 376805 + hypothetical protein gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0359 AHA_0360 AHA_0360 AHA_0360 376908 377507 + hypothetical protein identified by match to protein family HMM PF01914%3B match to protein family HMM TIGR00427 gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0360 AHA_0361 AHA_0361 AHA_0361 377612 378580 - HTH-type transcriptional regulator YidZ identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0361 AHA_0362 AHA_0362 AHA_0362 378854 379015 + hypothetical protein identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411 gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0362 AHA_0363 AHA_0363 AHA_0363 379030 379332 + hypothetical protein identified by match to protein family HMM PF04175 gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0363 AHA_0364 AHA_0364 AHA_0364 379381 380982 + amino-acid ABC transporter binding protein identified by match to protein family HMM PF01464 gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0364 AHA_0365 AHA_0365 AHA_0365 381214 382467 + phospholipase D identified by match to protein family HMM PF00614 gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0365 AHA_0366 AHA_0366 AHA_0366 382947 384065 - fatty acid desaturase family protein identified by match to protein family HMM PF00487 gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0366 AHA_0367 AHA_0367 AHA_0367 384214 384834 + DNA-binding transcriptional repressor FabR negatively controls the expression of fabA and fabB%2C genes involved in the unsaturated fatty acid biosynthesis gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0367 AHA_0368 AHA_0368 AHA_0368 384843 385220 + hypothetical protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0368 AHA_0369 AHA_0369 AHA_0369 385259 385570 - hypothetical protein gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0369 AHA_0370 AHA_0370 AHA_0370 385681 386310 - methyltransferase identified by match to protein family HMM PF03602%3B match to protein family HMM TIGR00095 gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0370 AHA_0371 AHA_0371 AHA_0371 386421 388322 + cell division protein FtsY identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064 gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0371 AHA_0372 AHA_0372 ftsE ftsE 388413 389081 + cell division ATP-binding protein FtsE identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02673 gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0372 AHA_0373 AHA_0373 AHA_0373 389081 390034 + cell division membrane protein identified by match to protein family HMM PF02687 gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0373 AHA_0374 AHA_0374 rpoH rpoH 390490 391344 + alternative sigma factor RpoH identified by similarity to SP:P11539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02392%3B match to protein family HMM TIGR02937 gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0374 AHA_0375 AHA_0375 AHA_0375 391471 392130 + carbonic anhydrase identified by match to protein family HMM PF00484 gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0375 AHA_0376 AHA_0376 hutC hutC 392142 392846 + histidine utilization repressor identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702%3B match to protein family HMM TIGR02018 gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0376 AHA_0377 AHA_0377 hutI hutI 392933 394237 + imidazolonepropionase catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate%2C the third step in the histidine degradation pathway gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0377 AHA_0378 AHA_0378 hutG hutG 394230 395174 + formimidoylglutamase catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0378 AHA_0379 AHA_0379 hutU hutU 395229 396938 + urocanate hydratase catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0379 AHA_0380 AHA_0380 hutH hutH 396943 398475 + histidine ammonia-lyase catalyzes the degradation of histidine to urocanate and ammmonia gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0380 AHA_0381 AHA_0381 AHA_0381 398545 399642 - calcium/proton antiporter identified by match to protein family HMM PF01699 gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0381 AHA_0382 AHA_0382 AHA_0382 399804 401171 - EAL domain-containing protein identified by match to protein family HMM PF00563 gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0382 AHA_0383 AHA_0383 AHA_0383 401850 403808 + regulatory protein CsrD regulates the degradation of the small RNAs CsrB and CsrC%3B may function to targate RNase E to specific RNA molecules gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0383 AHA_0384 AHA_0384 AHA_0384 403909 404856 - ACC deaminase/D-cysteine desulfhydrase family protein identified by match to protein family HMM PF00291 gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0384 AHA_0385 AHA_0385 AHA_0385 404926 405789 + MSHA biogenesis protein MshI gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0385 AHA_0386 AHA_0386 AHA_0386 405786 405890 + hypothetical protein gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0386 AHA_0387 AHA_0387 AHA_0387 405890 406483 + hypothetical protein gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0387 AHA_0388 AHA_0388 AHA_0388 406483 407130 + msha biogenesis protein mshj gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0388 AHA_0389 AHA_0389 AHA_0389 407520 409193 + msha biogenesis protein mshl identified by match to protein family HMM PF00263%3B match to protein family HMM PF07655%3B match to protein family HMM TIGR02519 gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0389 AHA_0390 AHA_0390 AHA_0390 409271 410161 + general secretion pathway protein A gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0390 AHA_0391 AHA_0391 AHA_0391 410257 411255 + hypothetical protein gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0391 AHA_0392 AHA_0392 AHA_0392 411288 412997 + type IV pilin identified by match to protein family HMM PF00437%3B match to protein family HMM PF05157 gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0392 AHA_0393 AHA_0393 AHA_0393 413051 414271 + GspF family protein identified by match to protein family HMM PF00482 gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0393 AHA_0394 AHA_0394 AHA_0394 414449 414913 + hypothetical protein gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0394 AHA_0395 AHA_0395 AHA_0395 414987 415658 + msha pilin protein mshb identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0395 AHA_0396 AHA_0396 AHA_0396 416158 416649 + msha pilin protein mshc identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0396 AHA_0397 AHA_0397 mshD mshD 416636 417199 + msha pilin protein mshd identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0397 AHA_0398 AHA_0398 AHA_0398 417199 418020 + msha biogenesis protein msho identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0398 AHA_0399 AHA_0399 AHA_0399 418483 422166 + protein MshQ gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0399 AHA_0400 AHA_0400 mreB mreB 422371 423411 + rod shape-determining protein MreB functions in MreBCD complex in some organisms gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0400 AHA_0401 AHA_0401 mreC mreC 423454 424359 + rod shape-determining protein MreC in some organisms this protein is a transmembrane protein while in others it is periplasmic%3B involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0401 AHA_0402 AHA_0402 mreD mreD 424359 424844 + rod shape-determining protein MreD identified by match to protein family HMM PF04093 gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0402 AHA_0403 AHA_0403 maf-1 maf-1 424896 425483 + septum formation protein Maf identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0403 AHA_0404 AHA_0404 AHA_0404 425670 427139 + ribonuclease G involved in the processing of the 5'end of 16S rRNA gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0404 AHA_0405 AHA_0405 AHA_0405 427170 431039 + hypothetical protein identified by match to protein family HMM TIGR02099 gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0405 AHA_0406 AHA_0406 AHA_0406 431074 431394 + stress responsive A/B barrel domain family protein identified by match to protein family HMM PF07876 gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0406 AHA_0407 AHA_0407 AHA_0407 431423 432229 + carbon-nitrogen family hydrolase identified by match to protein family HMM PF00795 gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0407 AHA_0408 AHA_0408 tldD tldD 432389 433828 + protein TldD identified by similarity to SP:P46473%3B match to protein family HMM PF01523 gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0408 AHA_0409 AHA_0409 AHA_0409 433861 434721 + RpiR family transcriptional regulator identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418 gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0409 AHA_0410 AHA_0410 AHA_0410 434809 435414 - hypothetical protein gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0410 AHA_0411 AHA_0411 AHA_0411 435464 436537 - outer membrane protein gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0411 AHA_0412 AHA_0412 murP murP 436639 438093 - PTS system N-acetylmuramic acid transporter subunit IIBC belongs to PEP-dependent PTS system%3B contains the PTS EIIBC domains%3B involved in uptake of exogenous N-acetylmuramic acid (MurNAc)%3B requires crr-encoded enzyme IIA-glucose component gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0412 AHA_0413 AHA_0413 murQ murQ 438193 439089 - N-acetylmuramic acid 6-phosphate etherase catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0413 AHA_0414 AHA_0414 AHA_0414 439353 439607 - hypothetical protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0414 AHA_0415 AHA_0415 AHA_0415 439717 440436 - multiple drug resistance protein MarC protein involved in resistance to different drugs (tetracycline%2C chloramphenicol%2C beta-lactams%2C and quinolones)%3B part of the multiple antibiotic resistance (mar) locus%2C which is composed by the genes marC and marRAB%3B unknown function gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0415 AHA_0416 AHA_0416 AHA_0416 440568 441884 - major facilitator transporter identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0416 AHA_0417 AHA_0417 AHA_0417 442800 444002 - regulatory components of sensory transduction system identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966 gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0417 AHA_0418 AHA_0418 AHA_0418 442132 442803 + hypothetical protein identified by match to protein family HMM PF01902 gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0418 AHA_0419 AHA_0419 AHA_0419 443941 446607 - hybrid sensory kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0419 AHA_0420 AHA_0420 AHA_0420 446608 447678 - TorS-like protein identified by match to protein family HMM PF02518%3B match to protein family HMM PF07228 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0420 AHA_0421 AHA_0421 AHA_0421 447685 448059 - sigma-B regulator RsbS gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0421 AHA_0422 AHA_0422 AHA_0422 448069 449460 - chemotaxis protein identified by match to protein family HMM PF00989%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00229 gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0422 AHA_0423 AHA_0423 AHA_0423 450089 450508 - hypothetical protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0423 AHA_0424 AHA_0424 AHA_0424 449431 450123 + AraC family transcriptional regulator identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311%3B match to protein family HMM PF07883 gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0424 AHA_0425 AHA_0425 aphA aphA 450541 451434 + acid phosphatase/phosphotransferase Class B%3B non-specific%3B catalyzes the dephosphorylation of organic phosphomonoesters%3B also has phosphotransferase activity gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0425 AHA_0426 AHA_0426 AHA_0426 451497 452342 - zinc protease identified by match to protein family HMM PF04228 gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0426 AHA_0427 AHA_0427 AHA_0427 452450 452713 - hypothetical protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0427 AHA_0428 AHA_0428 AHA_0428 452830 453708 + hypothetical protein identified by match to protein family HMM TIGR00277 gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0428 AHA_0429 AHA_0429 AHA_0429 453826 454347 + acetyltransferase identified by match to protein family HMM PF00583 gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0429 AHA_0430 AHA_0430 AHA_0430 454474 454650 - hypothetical protein gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0430 AHA_0431 AHA_0431 AHA_0431 455122 456399 - NhaP-type Na+/H+ and K+/H+ antiporters identified by match to protein family HMM PF00999 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0431 AHA_0432 AHA_0432 metH metH 456603 460286 + B12-dependent methionine synthase one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0432 AHA_0433 AHA_0433 AHA_0433 460466 461422 + ribosomal protein S6 modification protein identified by match to protein family HMM PF02655%3B match to protein family HMM TIGR00768 gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0433 AHA_0434 AHA_0434 brnQ-1 brnQ-1 461811 463145 + branched-chain amino acid transport system II carrier protein identified by similarity to SP:P37011%3B match to protein family HMM PF05525%3B match to protein family HMM TIGR00796 gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0434 AHA_0435 AHA_0435 AHA_0435 463220 464431 - sensory transduction protein kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672 gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0435 AHA_0436 AHA_0436 AHA_0436 464475 465746 - response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0436 AHA_0437 AHA_0437 AHA_0437 465736 466215 + hypothetical protein gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0437 AHA_0438 AHA_0438 AHA_0438 466510 467991 + hemolysin identified by match to protein family HMM PF01117%3B match to protein family HMM PF03440 gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0438 AHA_0439 AHA_0439 AHA_0439 468494 470485 + thiamine biosynthesis protein ThiC required for the synthesis of the hydromethylpyrimidine moiety of thiamine gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0439 AHA_0440 AHA_0440 AHA_0440 470482 472098 + thiamine monophosphate synthase identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00097%3B match to protein family HMM TIGR00693 gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0440 AHA_0441 AHA_0441 thiF thiF 472161 472919 + thiazole biosynthesis adenylyltransferase ThiF identified by similarity to SP:P30138%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237 gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0441 AHA_0442 AHA_0442 thiS thiS 472889 473122 + thiamine biosynthesis protein ThiS identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01683 gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0442 AHA_0443 AHA_0443 thiG thiG 473124 473891 + thiazole synthase functions in thiamine (vitamin B1) biosynthesis%3B in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0443 AHA_0444 AHA_0444 thiH thiH 473927 475198 + thiazole biosynthesis protein ThiH identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR02351 gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0444 AHA_0445 AHA_0445 AHA_0445 476309 478207 + hypothetical protein gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0445 AHA_0446 AHA_0446 AHA_0446 478359 479021 - acetyltransferase identified by match to protein family HMM PF00583 gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0446 AHA_0447 AHA_0447 AHA_0447 479239 479820 + hypothetical protein gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0447 AHA_0448 AHA_0448 AHA_0448 479899 480315 - acetyltransferase identified by match to protein family HMM PF00583 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0448 AHA_0449 AHA_0449 AHA_0449 480428 480745 - hypothetical protein gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0449 AHA_0450 AHA_0450 AHA_0450 481080 481985 + diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0450 AHA_0451 AHA_0451 AHA_0451 482444 483718 + serine transporter identified by match to protein family HMM PF03222 gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0451 AHA_0452 AHA_0452 AHA_0452 483782 484489 - protein ExoD identified by match to protein family HMM PF06055 gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0452 AHA_0453 AHA_0453 AHA_0453 484671 485291 + hypothetical protein gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0453 AHA_0454 AHA_0454 AHA_0454 485820 486125 - hypothetical protein gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0454 AHA_0455 AHA_0455 AHA_0455 485288 485839 + acetyltransferase identified by match to protein family HMM PF00583 gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0455 AHA_0456 AHA_0456 AHA_0456 486609 487043 - acetyltransferase identified by match to protein family HMM PF00583 gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0456 AHA_0457 AHA_0457 AHA_0457 486247 486612 + transcriptional regulator identified by match to protein family HMM PF01638 gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0457 AHA_0458 AHA_0458 AHA_0458 487169 487858 - hypothetical protein gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0458 AHA_0459 AHA_0459 AHA_0459 487871 488908 - fucose 4-O-acetylase gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0459 AHA_0460 AHA_0460 AHA_0460 489085 489720 - PepSY-associated TM helix family protein identified by match to protein family HMM PF03929 gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0460 AHA_0461 AHA_0461 AHA_0461 489771 491813 - TonB-dependent siderophore receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783 gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0461 AHA_0462 AHA_0462 AHA_0462 492040 492951 - hypothetical protein gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0462 AHA_0463 AHA_0463 AHA_0463 493069 494283 - hypothetical protein identified by match to protein family HMM PF00267 gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0463 AHA_0464 AHA_0464 glpX glpX 494354 495364 + fructose 1%2C6-bisphosphatase II type II fructose 1%2C6-bisphosphatae%3B in Escherichia coli this protein forms a dimer and binds manganese gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0464 AHA_0465 AHA_0465 AHA_0465 495522 495773 + proteinase inhibitor identified by match to protein family HMM PF03692 gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0465 AHA_0466 AHA_0466 AHA_0466 495930 497093 - HemY protein identified by match to protein family HMM PF07219%3B match to protein family HMM PF07721 gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0466 AHA_0467 AHA_0467 AHA_0467 497104 498180 - uroporphyrin-III C-methyltransferase identified by match to protein family HMM PF04375 gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0467 AHA_0468 AHA_0468 hemD hemD 498177 498911 - uroporphyrinogen-III synthase identified by match to protein family HMM PF02602 gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0468 AHA_0469 AHA_0469 hemC hemC 498908 499855 - porphobilinogen deaminase transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0469 AHA_0470 AHA_0470 cyaA cyaA 500161 502695 + adenylate cyclase catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0470 AHA_0471 AHA_0471 AHA_0471 502819 503490 - carboxylesterase 2 identified by match to protein family HMM PF02230 gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0471 AHA_0472 AHA_0472 AHA_0472 503487 503801 - protein CyaY identified by match to protein family HMM PF01491 gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0472 AHA_0473 AHA_0473 lysA lysA 504072 505322 + diaminopimelate decarboxylase identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01048 gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0473 AHA_0474 AHA_0474 dapF dapF 505388 506218 + diaminopimelate epimerase involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0474 AHA_0475 AHA_0475 AHA_0475 506329 506979 + hypothetical protein identified by match to protein family HMM PF04340 gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0475 AHA_0476 AHA_0476 xerC xerC 506972 507949 + tyrosine recombinase XerC identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02224 gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0476 AHA_0477 AHA_0477 AHA_0477 507990 508700 + HAD-superfamily hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549 gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0477 AHA_0478 AHA_0478 AHA_0478 508799 509209 - hypothetical protein gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0478 AHA_0479 AHA_0479 AHA_0479 509242 510768 - small conductance mechanosensitive ion channel (MscS) family protein identified by match to protein family HMM PF00027%3B match to protein family HMM PF00924 gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0479 AHA_0480 AHA_0480 AHA_0480 510884 511297 + hypothetical protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0480 AHA_0481 AHA_0481 AHA_0481 511307 512077 - glutamine amidotransferase identified by match to protein family HMM PF00117%3B match to protein family HMM PF07722 gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0481 AHA_0482 AHA_0482 AHA_0482 512439 513248 - phosphatase YidA identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0482 AHA_0483 AHA_0483 AHA_0483 513353 515047 - hypothetical protein identified by match to protein family HMM PF03961 gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0483 AHA_0484 AHA_0484 AHA_0484 515309 516283 + membrane-fusion protein identified by match to protein family HMM PF00529 gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0484 AHA_0485 AHA_0485 AHA_0485 516276 517205 + multidrug ABC transporter ATPase identified by match to protein family HMM PF00005 gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0485 AHA_0486 AHA_0486 AHA_0486 517312 518406 + multidrug ABC transporter permease identified by match to protein family HMM PF01061 gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0486 AHA_0487 AHA_0487 AHA_0487 518484 519641 - competence/damage-inducible protein CinA identified by match to protein family HMM PF00994 gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0487 AHA_0488 AHA_0488 AHA_0488 519702 521000 - HD-GYP domain-containing protein identified by match to protein family HMM PF01966 gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0488 AHA_0489 AHA_0489 metA metA 521085 522038 + homoserine O-succinyltransferase catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0489 AHA_0490 AHA_0490 AHA_0490 522047 522619 - protein tyrosine phosphatase gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0490 AHA_0491 AHA_0491 AHA_0491 522713 523183 + AsnC family transcriptional regulator identified by match to protein family HMM PF01037 gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0491 AHA_0492 AHA_0492 AHA_0492 523241 525205 - sulfatase identified by match to protein family HMM PF00884 gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0492 AHA_0493 AHA_0493 AHA_0493 525465 525722 + hypothetical protein gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0493 AHA_0494 AHA_0494 AHA_0494 525968 527935 + TonB-dependent copper receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01778 gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0494 AHA_0495 AHA_0495 AHA_0495 528005 529678 + glycosidase identified by match to protein family HMM PF00128 gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0495 AHA_0496 AHA_0496 AHA_0496 529733 530263 - Mg2+ transporter identified by match to protein family HMM PF02308 gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0496 AHA_0497 AHA_0497 AHA_0497 530291 531733 - hypothetical protein gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0497 AHA_0498 AHA_0498 AHA_0498 531920 532378 + Pab N-terminal acetyltransferase identified by match to protein family HMM PF00583 gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0498 AHA_0499 AHA_0499 AHA_0499 532393 532638 + hypothetical protein gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0499 AHA_0500 AHA_0500 AHA_0500 532695 533441 + NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0500 AHA_0501 AHA_0501 AHA_0501 533503 535107 - cytosol non-specific dipeptidase identified by match to protein family HMM PF03577 gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0501 AHA_0502 AHA_0502 AHA_0502 535441 535893 + hypothetical protein gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0502 AHA_0503 AHA_0503 AHA_0503 536092 536673 - hypothetical protein gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0503 AHA_0504 AHA_0504 AHA_0504 536885 538060 + NADH-dependent iron-containing alcohol dehydrogenase identified by match to protein family HMM PF00465 gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0504 AHA_0505 AHA_0505 AHA_0505 538265 538963 - glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0505 AHA_0506 AHA_0506 AHA_0506 539003 540271 - O-acetylhomoserine sulfhydrylase MetY identified by match to protein family HMM PF01041%3B match to protein family HMM PF01053%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR01326 gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0506 AHA_0507 AHA_0507 AHA_0507 540428 540604 - hypothetical protein gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0507 AHA_0508 AHA_0508 AHA_0508 540675 542438 + solute-binding family 5 protein identified by match to protein family HMM PF00496 gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0508 AHA_0509 AHA_0509 AHA_0509 542474 542869 + thioesterase family protein identified by match to protein family HMM PF03061 gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0509 AHA_0510 AHA_0510 AHA_0510 542901 543614 + hypothetical protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0510 AHA_0511 AHA_0511 AHA_0511 543679 544422 - lipase chaperone gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0511 AHA_0512 AHA_0512 AHA_0512 544419 545420 - lipase identified by match to protein family HMM PF00561 gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0512 AHA_0513 AHA_0513 AHA_0513 545500 545622 - hypothetical protein gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0513 AHA_0514 AHA_0514 AHA_0514 545621 546046 + hypothetical protein gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0514 AHA_0515 AHA_0515 AHA_0515 546068 546682 + superoxide dismutase (Mn) identified by match to protein family HMM PF00081%3B match to protein family HMM PF02777 gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0515 AHA_0516 AHA_0516 AHA_0516 546736 547761 - sanA protein identified by match to protein family HMM PF02698 gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0516 AHA_0517 AHA_0517 AHA_0517 547928 550675 - collagenase family protein identified by match to protein family HMM PF01752 gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0517 AHA_0518 AHA_0518 AHA_0518 551179 551550 - fimbrial protein identified by similarity to GB:CAA54702.1 gene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0518 AHA_0519 AHA_0519 AHA_0519 552789 553331 + fimbrial protein identified by match to protein family HMM PF00419 gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0519 AHA_0520 AHA_0520 AHA_0520 553413 553820 + hypothetical protein gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0520 AHA_0521 AHA_0521 AHA_0521 553888 556422 + outer membrane usher protein identified by match to protein family HMM PF00577 gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0521 AHA_0522 AHA_0522 AHA_0522 556433 557164 + fimbrial chaperone protein identified by match to protein family HMM PF00345%3B match to protein family HMM PF02753 gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0522 AHA_0523 AHA_0523 AHA_0523 557169 558203 + fimbrial protein identified by similarity to GB:AAV78666.1 gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0523 AHA_0524 AHA_0524 AHA_0524 558215 558766 + fimbrial protein identified by match to protein family HMM PF00419 gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0524 AHA_0525 AHA_0525 AHA_0525 558769 559452 - hypothetical protein gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0525 AHA_0526 AHA_0526 AHA_0526 559449 560009 - transcriptional regulatory protein%2C C terminal identified by match to protein family HMM PF00486 gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0526 AHA_0527 AHA_0527 menE menE 560311 561717 - o-succinylbenzoate--CoA ligase identified by similarity to SP:P37353%3B match to protein family HMM PF00501%3B match to protein family HMM TIGR01923 gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0527 AHA_0528 AHA_0528 menC menC 561728 562657 - o-succinylbenzoic acid (OSB) synthetase identified by match to protein family HMM TIGR01927 gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0528 AHA_0529 AHA_0529 menB menB 562657 563517 - naphthoate synthase catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0529 AHA_0530 AHA_0530 AHA_0530 563510 564280 - alpha/beta hydrolase identified by match to protein family HMM PF00561 gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0530 AHA_0531 AHA_0531 menD menD 564270 566000 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase SEPHCHC synthase%3B forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0531 AHA_0532 AHA_0532 menF menF 566035 567381 - menaquinone-specific isochorismate synthase identified by similarity to SP:P38051%3B match to protein family HMM PF00425%3B match to protein family HMM TIGR00543 gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0532 AHA_0533 AHA_0533 menA menA 567571 568494 + 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase identified by similarity to SP:P32166%3B match to protein family HMM PF01040%3B match to protein family HMM TIGR00751 gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0533 AHA_0534 AHA_0534 AHA_0534 568547 568816 + hypothetical protein gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0534 AHA_0535 AHA_0535 AHA_0535 568896 570293 - propeptide%2C PepSY amd peptidase M4:PepSY-associated TM helix identified by match to protein family HMM PF03413%3B match to protein family HMM PF03929 gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0535 AHA_0536 AHA_0536 AHA_0536 570566 570961 + hypothetical protein gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0536 AHA_0537 AHA_0537 AHA_0537 571145 571435 - hypothetical protein identified by match to protein family HMM PF03692 gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0537 AHA_0538 AHA_0538 AHA_0538 571508 572884 - ATP-independent RNA helicase DbpA identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880 gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0538 AHA_0539 AHA_0539 AHA_0539 573287 574654 + nucleoside permease NupC identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670 gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0539 AHA_0540 AHA_0540 AHA_0540 574747 575247 - hydrolase identified by match to protein family HMM PF04307 gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0540 AHA_0541 AHA_0541 AHA_0541 575340 575894 - cytochrome B identified by match to protein family HMM PF01292 gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0541 AHA_0542 AHA_0542 AHA_0542 575943 576212 - hypothetical protein identified by similarity to GB:AAY38542.1 gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0542 AHA_0543 AHA_0543 AHA_0543 576334 576786 - YaiI/YqxD family protein identified by match to protein family HMM PF02639 gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0543 AHA_0544 AHA_0544 zntB zntB 576898 577884 + zinc transporter identified by match to protein family HMM PF01544 gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0544 AHA_0545 AHA_0545 AHA_0545 577894 578412 + hypothetical protein gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0545 AHA_0546 AHA_0546 AHA_0546 578455 578703 - hypothetical protein gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0546 AHA_0547 AHA_0547 AHA_0547 578767 579342 - molecular chaperone identified by match to protein family HMM PF00226 gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0547 AHA_0548 AHA_0548 AHA_0548 579339 581294 - sodium/hydrogen exchanger family protein identified by match to protein family HMM PF00999 gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0548 AHA_0549 AHA_0549 mtlR mtlR 581303 581824 - mannitol repressor protein Acts as a repressor of the mtlAD operon gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0549 AHA_0550 AHA_0550 AHA_0550 581933 583201 - mannitol-1-phosphate 5-dehydrogenase identified by match to protein family HMM PF01232%3B match to protein family HMM PF08125 gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0550 AHA_0551 AHA_0551 AHA_0551 583116 585038 - pts system mannitol-specific eiicba component (eiicba-mtl) (eii-mtl) identified by match to protein family HMM PF00359%3B match to protein family HMM PF02302%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00851 gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0551 AHA_0552 AHA_0552 AHA_0552 585493 586539 - transporter gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0552 AHA_0553 AHA_0553 AHA_0553 586561 587286 - TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0553 AHA_0554 AHA_0554 rnb rnb 587343 589364 - exoribonuclease II Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0554 AHA_0555 AHA_0555 AHA_0555 589465 590364 - chromosome replication initiation inhibitor protein specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin (oriC) to block initiation of replication%3B also controls genes involved in arginine transport gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0555 AHA_0556 AHA_0556 AHA_0556 590632 591255 - autoinducer synthesis protein AhyI identified by match to protein family HMM PF00765 gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0556 AHA_0557 AHA_0557 ahyR ahyR 591318 592103 + transcriptional activator protein AhyR identified by similarity to SP:P0A3J6%3B match to protein family HMM PF00196%3B match to protein family HMM PF03472%3B match to protein family HMM PF04967 gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0557 AHA_0558 AHA_0558 AHA_0558 592316 592936 + arginine exporter protein ArgO identified by match to protein family HMM PF01810%3B match to protein family HMM TIGR00948 gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0558 AHA_0559 AHA_0559 AHA_0559 593051 595042 + 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0559 AHA_0560 AHA_0560 AHA_0560 595108 595584 - surface antigen family protein identified by match to protein family HMM PF05433 gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0560 AHA_0561 AHA_0561 AHA_0561 595722 596174 - acetyltransferase identified by match to protein family HMM PF00583 gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0561 AHA_0562 AHA_0562 AHA_0562 596295 596750 - hypothetical protein gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0562 AHA_0563 AHA_0563 AHA_0563 596803 598605 - aminopeptidase identified by match to protein family HMM PF00557 gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0563 AHA_0564 AHA_0564 AHA_0564 598639 599304 - GntR family transcriptional regulator identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729 gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0564 AHA_0565 AHA_0565 pckA pckA 599480 601105 - phosphoenolpyruvate carboxykinase PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0565 AHA_0566 AHA_0566 hslO hslO 601255 602142 - Hsp33-like chaperonin becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0566 AHA_0567 AHA_0567 AHA_0567 602248 602838 - heat shock protein 15 identified by match to protein family HMM PF01479 gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0567 AHA_0568 AHA_0568 gspC gspC 602786 603709 + general secretion pathway protein C identified by similarity to GB:AAA58784.1%3B match to protein family HMM TIGR01713 gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0568 AHA_0569 AHA_0569 gspD gspD 603731 605764 + general secretion pathway protein D identified by similarity to SP:P45758%3B match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM TIGR02517 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0569 AHA_0570 AHA_0570 gspE gspE 605764 607269 + general secretory pathway protein E identified by similarity to SP:P31741%3B match to protein family HMM PF00437%3B match to protein family HMM TIGR02533 gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0570 AHA_0571 AHA_0571 gspF gspF 607271 608491 + general secretion pathway protein F identified by match to protein family HMM PF00482%3B match to protein family HMM TIGR02120 gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0571 AHA_0572 AHA_0572 gspG gspG 608607 609038 + general secretion pathway protein G identified by similarity to SP:P31733%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR01710%3B match to protein family HMM TIGR02532 gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0572 AHA_0573 AHA_0573 gspH gspH 609202 609753 + general secretion pathway protein H identified by similarity to SP:P31735%3B match to protein family HMM TIGR01708%3B match to protein family HMM TIGR02532 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0573 AHA_0574 AHA_0574 gspI gspI 609750 610109 + general secretion pathway protein I identified by similarity to SP:P31737%3B match to protein family HMM PF02501%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR01707%3B match to protein family HMM TIGR02532 gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0574 AHA_0575 AHA_0575 gspJ gspJ 610178 610807 + general secretion pathway protein J identified by similarity to SP:P31739%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR01711%3B match to protein family HMM TIGR02532 gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0575 AHA_0576 AHA_0576 gspK gspK 610897 611922 + general secretion pathway protein K identified by similarity to SP:P31760%3B match to protein family HMM PF03934 gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0576 AHA_0577 AHA_0577 gspL gspL 612042 613226 + general secretion pathway protein L identified by match to protein family HMM PF05134%3B match to protein family HMM TIGR01709 gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0577 AHA_0578 AHA_0578 gspM gspM 613223 613714 + general secretion pathway protein M identified by similarity to SP:P41850%3B match to protein family HMM PF04612 gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0578 AHA_0579 AHA_0579 gspN gspN 613776 614531 + type II secretion system protein N identified by match to protein family HMM PF01203 gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0579 AHA_0580 AHA_0580 AHA_0580 614592 615503 - LuxR family transcriptional regulator identified by match to protein family HMM PF00196 gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0580 AHA_0581 AHA_0581 tyrS-1 tyrS-1 615563 616831 + tyrosyl-tRNA synthetase catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0581 AHA_0582 AHA_0582 AHA_0582 616925 617593 - HAD family hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0582 AHA_0583 AHA_0583 nudE nudE 617780 618340 + ADP-ribose diphosphatase NudE ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0583 AHA_0584 AHA_0584 cysQ-1 cysQ-1 618378 619190 + 3'(2')%2C5'-bisphosphate nucleotidase identified by match to protein family HMM PF00459%3B match to protein family HMM TIGR01331 gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0584 AHA_0585 AHA_0585 AHA_0585 619602 620873 + serine transporter identified by match to protein family HMM PF01490 gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0585 AHA_0586 AHA_0586 AHA_0586 620947 621285 - protein CsaA identified by match to protein family HMM PF01588%3B match to protein family HMM TIGR02222 gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0586 AHA_0587 AHA_0587 AHA_0587 621370 622122 - AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0587 AHA_0588 AHA_0588 metJ metJ 622158 622481 - transcriptional repressor protein MetJ when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0588 AHA_0589 AHA_0589 metB metB 622690 623853 + O-succinylhomoserine (thiol)-lyase identified by match to protein family HMM PF01053%3B match to protein family HMM TIGR02080 gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0589 AHA_0590 AHA_0590 metL metL 623853 626321 + bifunctional aspartate kinase II/homoserine dehydrogenase II multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0590 AHA_0591 AHA_0591 ppc ppc 626974 629607 - phosphoenolpyruvate carboxylase catalyzes the formation of oxaloacetate from phosphoenolpyruvate gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0591 AHA_0592 AHA_0592 argE argE 629823 630968 - acetylornithine deacetylase catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0592 AHA_0593 AHA_0593 argC argC 631237 632244 + N-acetyl-gamma-glutamyl-phosphate reductase catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis%3B involved in both the arginine and lysine biosynthetic pathways%3B lysine is produced via the AAA pathway%2C lysine from alpha-aminoadipate gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0593 AHA_0594 AHA_0594 argB argB 632268 633047 + acetylglutamate kinase catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0594 AHA_0595 AHA_0595 argF-1 argF-1 632968 633984 + ornithine carbamoyltransferase catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0595 AHA_0596 AHA_0596 argG argG 634039 635274 + argininosuccinate synthase catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis%2C AMP-forming gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0596 AHA_0597 AHA_0597 argH argH 635484 636869 + argininosuccinate lyase catalyzes the formation of arginine from (N-L-arginino)succinate gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0597 AHA_0598 AHA_0598 AHA_0598 636990 637547 - hypothetical protein identified by match to protein family HMM PF06114 gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0598 AHA_0599 AHA_0599 AHA_0599 638445 638906 - hypothetical protein gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0599 AHA_0600 AHA_0600 AHA_0600 639107 639379 - hypothetical protein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0600 AHA_0601 AHA_0601 AHA_0601 639428 639769 - integral membrane protein identified by match to protein family HMM PF06961 gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0601 AHA_0602 AHA_0602 AHA_0602 639766 640356 - maltose O-acetyltransferase identified by match to protein family HMM PF00132 gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0602 AHA_0603 AHA_0603 AHA_0603 640437 641699 - MgtC/SapB transporter gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0603 AHA_0604 AHA_0604 AHA_0604 641909 642910 + sulfate-binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR00971 gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0604 AHA_0605 AHA_0605 AHA_0605 642967 643542 + hypothetical protein identified by match to protein family HMM PF06821 gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0605 AHA_0606 AHA_0606 cysT cysT 643795 644661 + sulfate/thiosulfate ABC transporter permease CysT identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02139 gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0606 AHA_0607 AHA_0607 cysW cysW 644658 645554 + sulfate/thiosulfate ABC transporter permease CysW identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02140 gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0607 AHA_0608 AHA_0608 cysA cysA 645577 646644 + sulfate/thiosulfate ABC transporter ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459%3B match to protein family HMM TIGR00968 gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0608 AHA_0609 AHA_0609 AHA_0609 646821 647768 + transcriptional regulator CysB-like protein identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0609 AHA_0610 AHA_0610 AHA_0610 647841 649325 - N-acetylglucosamine-binding protein A GbpA%3B plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium%3B in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin%2C glycoproteins and lipids on intestinal epithelial cells gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0610 AHA_0611 AHA_0611 AHA_0611 649679 651376 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0611 AHA_0612 AHA_0612 AHA_0612 651672 653519 + oligoendopeptidase F identified by match to protein family HMM PF01432 gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0612 AHA_0613 AHA_0613 AHA_0613 653596 654387 + hypothetical protein gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0613 AHA_0614 AHA_0614 AHA_0614 654401 656596 - hypothetical protein gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0614 AHA_0615 AHA_0615 AHA_0615 656878 657588 + hypothetical protein gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0615 AHA_0616 AHA_0616 AHA_0616 657609 658952 + hypothetical protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0616 AHA_0617 AHA_0617 AHA_0617 659059 662220 - tricorn protease-like protein identified by match to protein family HMM PF03572%3B match to protein family HMM PF07676 gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0617 AHA_0618 AHA_0618 AHA_0618 662465 662956 + ErfK/YbiS/YcfS/YnhG family protein gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0618 AHA_0619 AHA_0619 AHA_0619 663105 663824 + AzlC family protein identified by match to protein family HMM PF03591 gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0619 AHA_0620 AHA_0620 AHA_0620 664285 665811 + hypothetical protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0620 AHA_0621 AHA_0621 AHA_0621 665849 666700 + pyruvate formate lyase activating enzyme identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055 gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0621 AHA_0622 AHA_0622 AHA_0622 666893 667216 + hypothetical protein gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0622 AHA_0623 AHA_0623 AHA_0623 667259 668182 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0623 AHA_0624 AHA_0624 AHA_0624 668243 669439 - aromatic amino acid aminotransferase catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0624 AHA_0625 AHA_0625 AHA_0625 669609 669884 - hypothetical protein identified by match to protein family HMM PF02583 gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0625 AHA_0626 AHA_0626 AHA_0626 669956 670915 + heavy metal transporter identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0626 AHA_0627 AHA_0627 AHA_0627 670979 671389 - hypothetical protein gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0627 AHA_0628 AHA_0628 AHA_0628 671620 675708 + pullulanase identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02103 gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0628 AHA_0629 AHA_0629 zntA zntA 675901 678399 - zinc/cadmium/mercury/lead-transporting ATPase P-type ATPase involved in the export of lead%2C cadmium%2C zinc and mercury gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0629 AHA_0630 AHA_0630 AHA_0630 678536 679036 + thiol peroxidase gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0630 AHA_0631 AHA_0631 AHA_0631 679099 679917 - hypothetical protein gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0631 AHA_0632 AHA_0632 AHA_0632 680086 681306 + DEAD/DEAH box helicase identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0632 AHA_0633 AHA_0633 AHA_0633 681402 682895 + hypothetical protein gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0633 AHA_0634 AHA_0634 AHA_0634 682969 683757 - hypothetical protein gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0634 AHA_0635 AHA_0635 AHA_0635 683754 684869 - endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0635 AHA_0636 AHA_0636 AHA_0636 685279 686838 - aerotaxis receptor Aer identified by match to protein family HMM PF00015%3B match to protein family HMM TIGR00229 gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0636 AHA_0637 AHA_0637 AHA_0637 687080 687910 - CAAX amino protease identified by match to protein family HMM PF02517 gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0637 AHA_0638 AHA_0638 AHA_0638 688074 688364 - hypothetical protein gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0638 AHA_0639 AHA_0639 AHA_0639 688428 688802 - hypothetical protein identified by match to protein family HMM PF06062 gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0639 AHA_0640 AHA_0640 AHA_0640 689124 690239 + carbohydrate diacid regulator identified by match to protein family HMM PF05651 gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0640 AHA_0641 AHA_0641 AHA_0641 690359 691621 + gluconate:H+ symporter (GntP) family protein identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600 gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0641 AHA_0642 AHA_0642 AHA_0642 691631 692764 + glycerate kinase identified by match to protein family HMM PF02595%3B match to protein family HMM TIGR00045 gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0642 AHA_0643 AHA_0643 AHA_0643 692975 693538 + hypothetical protein identified by match to protein family HMM PF07298 gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0643 AHA_0644 AHA_0644 AHA_0644 693601 694134 + glutathione peroxidase identified by match to protein family HMM PF00255 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0644 AHA_0645 AHA_0645 AHA_0645 694196 695152 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0645 AHA_0646 AHA_0646 AHA_0646 695335 696531 + nucleoside permease identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670 gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0646 AHA_0647 AHA_0647 AHA_0647 696794 697288 - methylated-DNA--protein-cysteine methyltransferase identified by match to protein family HMM PF01035%3B match to protein family HMM PF02870%3B match to protein family HMM TIGR00589 gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0647 AHA_0648 AHA_0648 AHA_0648 697322 697738 - peptidyl-tRNA hydrolase domain-containing protein identified by match to protein family HMM PF00472 gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0648 AHA_0649 AHA_0649 AHA_0649 697940 698278 + nitrogen regulatory protein P-II identified by match to protein family HMM PF00543 gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0649 AHA_0650 AHA_0650 AHA_0650 698486 699493 + iron binding protein FbpA identified by match to protein family HMM PF01547 gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0650 AHA_0651 AHA_0651 fbpB fbpB 699534 701159 + iron(III) ABC transporter permease identified by match to protein family HMM PF00528 gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0651 AHA_0652 AHA_0652 AHA_0652 701229 702263 + iron(III) ABC transporter ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01189 gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0652 AHA_0653 AHA_0653 AHA_0653 702367 703272 + TyrA protein identified by match to protein family HMM PF04261%3B match to protein family HMM TIGR01413 gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0653 AHA_0654 AHA_0654 argR argR 703359 703829 - arginine repressor regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0654 AHA_0655 AHA_0655 AHA_0655 704031 704771 + arginine ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0655 AHA_0656 AHA_0656 AHA_0656 704797 705534 + arginine ABC transporter periplasmic substrate-binding protein ArtI identified by match to protein family HMM PF00497 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0656 AHA_0657 AHA_0657 AHA_0657 705538 706188 + arginine ABC transporter permease ArtQ identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0657 AHA_0658 AHA_0658 artM artM 706191 706853 + arginine transporter permease subunit ArtM with ArtPQJI acts to transport arginine across the inner membrane gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0658 AHA_0659 AHA_0659 mdh mdh 707075 708010 + malate dehydrogenase oxidizes malate to oxaloacetate gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0659 AHA_0660 AHA_0660 AHA_0660 708135 709046 + sodium-type flagellar motor component gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0660 AHA_0661 AHA_0661 AHA_0661 709149 710342 - flavohemoprotein identified by match to protein family HMM PF00042%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0661 AHA_0662 AHA_0662 AHA_0662 710453 710920 + Rrf2 family protein identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0662 AHA_0663 AHA_0663 AHA_0663 710954 712234 - transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0663 AHA_0664 AHA_0664 AHA_0664 712275 713066 - cytochrome C assembly protein identified by match to protein family HMM PF01578 gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0664 AHA_0665 AHA_0665 ffh ffh 713341 714717 + signal recognition particle protein identified by similarity to SP:P07019%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959 gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0665 AHA_0666 AHA_0666 rpsP rpsP 714902 715150 + 30S ribosomal protein S16 binds to lower part of 30S body where it stabilizes two domains%3B required for efficient assembly of 30S%3B in Escherichia coli this protein has nuclease activity gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0666 AHA_0667 AHA_0667 rimM rimM 715175 715696 + 16S rRNA-processing protein RimM Essential for efficient processing of 16S rRNA gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0667 AHA_0668 AHA_0668 trmD trmD 715731 716480 + tRNA (guanine-N(1)-)-methyltransferase methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0668 AHA_0669 AHA_0669 rplS rplS 716513 716860 + 50S ribosomal protein L19 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0669 AHA_0670 AHA_0670 AHA_0670 716964 717293 - 1%2C4-alpha-glucan-branching protein gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0670 AHA_0671 AHA_0671 mutH mutH 717376 718050 - DNA mismatch repair protein MutH%3B Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0671 AHA_0672 AHA_0672 AHA_0672 718784 719311 + dinucleoside polyphosphate hydrolase hydrolyzes diadenosine polyphosphate gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0672 AHA_0673 AHA_0673 ptsI-1 ptsI-1 719326 721605 + phosphoenolpyruvate-protein phosphotransferase identified by match to protein family HMM PF00391%3B match to protein family HMM PF01590%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417 gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0673 AHA_0674 AHA_0674 lgt lgt 721673 722497 + prolipoprotein diacylglyceryl transferase transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0674 AHA_0675 AHA_0675 thyA thyA 722497 723291 + thymidylate synthase ThyA%3B catalyzes formation of dTMP and 7%2C8-dihydrofolate from 5%2C10-methylenetetrahydrofolate and dUMP%3B involved in deoxyribonucleotide biosynthesis%3B there are 2 copies in some Bacilli%2C one of which appears to be phage-derived gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0675 AHA_0676 AHA_0676 nhaA nhaA 723518 724708 + pH-dependent sodium/proton antiporter exports sodium by using the electrochemical proton gradient to allow protons into the cell%3B functions in adaptation to high salinity and alkaline pH%3B activity increases at higher pH%3B downregulated at acidic pH gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0676 AHA_0677 AHA_0677 nhaR nhaR 725099 726031 + transcriptional activator NhaR Na+/H+ antiporter regulatory protein%3B activates the genes nhaA and osmC gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0677 AHA_0678 AHA_0678 AHA_0678 726057 726383 + nodulation protein NolR identified by match to protein family HMM PF01022%3B match to protein family HMM PF01638 gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0678 AHA_0679 AHA_0679 rpsT rpsT 726434 726697 - 30S ribosomal protein S20 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0679 AHA_0680 AHA_0680 mviN mviN 726889 728454 + integral membrane protein MviN identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695 gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0680 AHA_0681 AHA_0681 ribF ribF 728596 729570 + riboflavin biosynthesis protein RibF identified by match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083 gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0681 AHA_0682 AHA_0682 ileS ileS 729570 732431 + isoleucyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM PF06827%3B match to protein family HMM TIGR00392 gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0682 AHA_0683 AHA_0683 lspA lspA 732431 732934 + lipoprotein signal peptidase lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0683 AHA_0684 AHA_0684 fkpB fkpB 732931 733383 + FKBP-type peptidyl-prolyl cis-trans isomerase FkpB identified by match to protein family HMM PF00254 gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0684 AHA_0685 AHA_0685 ispH ispH 733383 734318 + 4-hydroxy-3-methylbut-2-enyl diphosphate reductase catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0685 AHA_0686 AHA_0686 AHA_0686 734580 735083 + type IV pilin identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0686 AHA_0687 AHA_0687 pilV pilV 735080 735493 + type IV pilus modification protein PilV identified by match to protein family HMM TIGR02523%3B match to protein family HMM TIGR02532 gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0687 AHA_0688 AHA_0688 AHA_0688 735490 736584 + type IV pilin gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0688 AHA_0689 AHA_0689 AHA_0689 736595 737071 + hypothetical protein gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0689 AHA_0690 AHA_0690 AHA_0690 737083 740436 + type IV pilus biogenesis protein identified by similarity to GB:AAA93502.1 gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0690 AHA_0691 AHA_0691 AHA_0691 740445 740846 + type IV pilin identified by similarity to GB:AAC38305.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0691 AHA_0692 AHA_0692 AHA_0692 740851 741237 - type IV pilin identified by similarity to GB:AAC38305.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0692 AHA_0693 AHA_0693 AHA_0693 741332 741868 + type IV pilin identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0693 AHA_0694 AHA_0694 AHA_0694 741859 742482 + type IV pilin identified by match to protein family HMM TIGR02532 gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0694 AHA_0695 AHA_0695 AHA_0695 742484 743581 + hypothetical protein gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0695 AHA_0696 AHA_0696 AHA_0696 743594 745693 + type IV pilin identified by match to protein family HMM TIGR02532 gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0696 AHA_0697 AHA_0697 nadE nadE 745767 747389 + NAD synthetase NH(3)-dependent%3B catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0697 AHA_0698 AHA_0698 glnB glnB 747399 747737 + nitrogen regulatory protein P-II 1 identified by similarity to SP:P0A9Z1%3B match to protein family HMM PF00543 gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0698 AHA_0699 AHA_0699 AHA_0699 747748 748392 + transcriptional regulatory protein gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0699 AHA_0700 AHA_0700 luxS luxS 748411 748920 + S-ribosylhomocysteinase catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0700 AHA_0701 AHA_0701 AHA_0701 748983 749948 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0701 AHA_0702 AHA_0702 rnr rnr 750140 752539 + ribonuclease R identified by match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02063 gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0702 AHA_0703 AHA_0703 AHA_0703 752536 753285 + RNA methyltransferase identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186 gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0703 AHA_0704 AHA_0704 AHA_0704 753296 753862 + cAMP-binding protein identified by match to protein family HMM PF00027 gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0704 AHA_0705 AHA_0705 AHA_0705 753920 754369 + acetyltransferase identified by match to protein family HMM PF00583 gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0705 AHA_0706 AHA_0706 AHA_0706 754597 755448 + drug/metabolite exporter family protein identified by match to protein family HMM PF00892 gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0706 AHA_0707 AHA_0707 AHA_0707 755566 756402 + drug/metabolite exporter (DME) family protein identified by match to protein family HMM PF00892 gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0707 AHA_0708 AHA_0708 AHA_0708 756436 757284 - hypothetical protein gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0708 AHA_0709 AHA_0709 mntH mntH 757392 758630 - manganese transport protein MntH identified by similarity to SP:P0A769%3B match to protein family HMM PF01566%3B match to protein family HMM TIGR01197 gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0709 AHA_0710 AHA_0710 rpsF rpsF 758853 759239 + 30S ribosomal protein S6 binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21 gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0710 AHA_0711 AHA_0711 rpsR rpsR 759270 759500 + 30S ribosomal protein S18 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0711 AHA_0712 AHA_0712 rplI rplI 759553 759999 + 50S ribosomal protein L9 in Escherichia coli this protein is wrapped around the base of the L1 stalk gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0712 AHA_0713 AHA_0713 AHA_0713 760101 760841 + ferredoxin--NADP reductase identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0713 AHA_0714 AHA_0714 AHA_0714 760894 761211 - hypothetical protein gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0714 AHA_0715 AHA_0715 AHA_0715 761574 762512 + hypothetical protein gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0715 AHA_0716 AHA_0716 AHA_0716 762562 762765 - hypothetical protein gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0716 AHA_0717 AHA_0717 AHA_0717 762774 763751 + quinone oxidoreductase identified by match to protein family HMM PF00107 gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0717 AHA_0718 AHA_0718 AHA_0718 763748 764185 + hypothetical protein gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0718 AHA_0719 AHA_0719 AHA_0719 764205 767018 + M16B family peptidase identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0719 AHA_0720 AHA_0720 gshA gshA 767079 768668 + glutamate--cysteine ligase identified by match to protein family HMM PF04262%3B match to protein family HMM TIGR01434 gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0720 AHA_0721 AHA_0721 AHA_0721 768923 770137 + hypothetical protein gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0721 AHA_0722 AHA_0722 AHA_0722 770220 772010 - long-chain-fatty-acid--CoA ligase-like protein identified by match to protein family HMM PF00501 gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0722 AHA_0723 AHA_0723 AHA_0723 772197 772742 + hypothetical protein gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0723 AHA_0724 AHA_0724 rimI rimI 772768 773217 - ribosomal-protein-alanine acetyltransferase identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR01575 gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0724 AHA_0725 AHA_0725 AHA_0725 773947 775593 + ATPase identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728 gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0725 AHA_0726 AHA_0726 yieM yieM 775781 777100 + hypothetical protein contains a von Willibrand factor type A domain%3B stimulates the ATPase activity of RavA gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0726 AHA_0727 AHA_0727 AHA_0727 777110 778114 - diguanylate cyclase/phosphodiesterase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0727 AHA_0728 AHA_0728 AHA_0728 778338 779258 + hypothetical protein identified by match to protein family HMM PF00515 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0728 AHA_0729 AHA_0729 AHA_0729 779375 780184 + diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0729 AHA_0730 AHA_0730 prfC prfC 780442 782028 + peptide chain release factor 3 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0730 AHA_0731 AHA_0731 AHA_0731 782197 782535 + steroid delta-isomerase domain-containing protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0731 AHA_0732 AHA_0732 AHA_0732 782602 783096 - transcriptional regulatory protein identified by match to protein family HMM PF01047 gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0732 AHA_0733 AHA_0733 AHA_0733 783159 783617 + alkylhydroperoxidase identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778 gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0733 AHA_0734 AHA_0734 AHA_0734 783675 784613 - MarR family transcriptional regulator identified by match to protein family HMM PF00583%3B match to protein family HMM PF01047 gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0734 AHA_0735 AHA_0735 xenB xenB 784819 785940 - xenobiotic reductase B identified by similarity to GB:AAF02539.1%3B match to protein family HMM PF00724 gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0735 AHA_0736 AHA_0736 AHA_0736 786045 786611 + TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0736 AHA_0737 AHA_0737 AHA_0737 786751 787707 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0737 AHA_0738 AHA_0738 AHA_0738 787858 788955 + agmatine deiminase catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0738 AHA_0739 AHA_0739 AHA_0739 789082 790785 + amidase catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0739 AHA_0740 AHA_0740 AHA_0740 792493 793254 + beta-lactamase identified by match to protein family HMM PF00753 gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0740 AHA_0741 AHA_0741 AHA_0741 793418 794710 + hypothetical protein gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0741 AHA_0742 AHA_0742 AHA_0742 794781 796031 - ATP-dependent RNA helicase RhlE identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0742 AHA_0743 AHA_0743 AHA_0743 796134 797003 - regulatory protein LysR identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0743 AHA_0744 AHA_0744 AHA_0744 797223 798455 + valanimycin resistance identified by match to protein family HMM PF07690 gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0744 AHA_0745 AHA_0745 AHA_0745 798462 798917 - hypothetical protein gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0745 AHA_0746 AHA_0746 AHA_0746 799088 799996 + hypothetical protein identified by match to protein family HMM PF01887 gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0746 AHA_0747 AHA_0747 AHA_0747 800063 800356 - hypothetical protein gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0747 AHA_0748 AHA_0748 AHA_0748 800502 801062 - carbonic anhydrase identified by match to protein family HMM PF00132 gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0748 AHA_0749 AHA_0749 AHA_0749 801320 801940 + ribonuclease T2 family protein identified by match to protein family HMM PF00445 gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0749 AHA_0750 AHA_0750 AHA_0750 802009 802293 + hypothetical protein gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0750 AHA_0751 AHA_0751 AHA_0751 802290 803348 + 2-nitropropane dioxygenase identified by match to protein family HMM PF03060 gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0751 AHA_0752 AHA_0752 rrsE rrsE 803843 805392 + 16S ribosomal RNA rRNA gene752 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0752 AHA_0753 AHA_0753 AHA_0753 805590 805665 + tRNA-Glu tRNA gene753 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0753 AHA_0754 AHA_0754 rrlE rrlE 805904 808792 + 23S ribosomal RNA rRNA gene754 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0754 AHA_0755 AHA_0755 rrfE rrfE 808907 809026 + 5S ribosomal RNA rRNA gene755 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0755 AHA_0756 AHA_0756 AHA_0756 809122 809198 + tRNA-Asp tRNA gene756 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0756 AHA_0757 AHA_0757 AHA_0757 809221 810054 + MutT/nudix family protein identified by match to protein family HMM PF00293 gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0757 AHA_0758 AHA_0758 AHA_0758 810083 811306 - two-component system sensor kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0758 AHA_0759 AHA_0759 AHA_0759 811363 812043 - transcriptional regulatory protein CpxR identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0759 AHA_0760 AHA_0760 AHA_0760 812205 813365 + macrolide-specific efflux protein MacA identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0760 AHA_0761 AHA_0761 AHA_0761 813368 815314 + macrolide-specific ABC-type efflux carrier identified by match to protein family HMM PF00005%3B match to protein family HMM PF02687 gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0761 AHA_0762 AHA_0762 AHA_0762 815619 816455 - glutamine/glutamate ABC transporter periplasmic glutamine/glutamate-binding protein identified by match to protein family HMM PF00497 gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0762 AHA_0763 AHA_0763 AHA_0763 816452 817213 - ABC transporter identified by match to protein family HMM PF00005 gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0763 AHA_0764 AHA_0764 AHA_0764 817210 817872 - glutamine transport system permease GlnP identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0764 AHA_0765 AHA_0765 AHA_0765 817947 818612 - glutamine/glutamate ABC transporter permease identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0765 AHA_0766 AHA_0766 AHA_0766 818609 819820 - threonine synthase catalyzes the formation of L-threonine from O-phospho-L-homoserine gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0766 AHA_0767 AHA_0767 AHA_0767 820056 822203 + prolyl endopeptidase identified by match to protein family HMM PF00326%3B match to protein family HMM PF02897 gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0767 AHA_0768 AHA_0768 AHA_0768 822407 824566 + AsmA protein identified by match to protein family HMM PF05170 gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0768 AHA_0769 AHA_0769 AHA_0769 824742 825278 + acetyltransferase identified by match to protein family HMM PF00583 gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0769 AHA_0770 AHA_0770 AHA_0770 825334 826068 + 3-oxoacyl-ACP reductase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370 gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0770 AHA_0771 AHA_0771 AHA_0771 826119 829052 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0771 AHA_0772 AHA_0772 AHA_0772 829124 829564 - acetyltransferase identified by match to protein family HMM PF00583 gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0772 AHA_0773 AHA_0773 AHA_0773 829745 830995 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0773 AHA_0774 AHA_0774 AHA_0774 831027 831848 + ion transporter identified by match to protein family HMM PF00520%3B match to protein family HMM PF07885 gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0774 AHA_0775 AHA_0775 AHA_0775 832001 832606 + arylsulfatase identified by match to protein family HMM PF06347 gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0775 AHA_0776 AHA_0776 AHA_0776 832876 836040 + bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase proline utilization protein A%3B multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate%3B in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0776 AHA_0777 AHA_0777 AHA_0777 836241 837020 + NUDIX family hydrolase identified by match to protein family HMM PF00293 gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0777 AHA_0778 AHA_0778 hemE hemE 837040 838230 + uroporphyrinogen decarboxylase catalyzes the formation of coproporphyrinogen from uroporphyrinogen III gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0778 AHA_0779 AHA_0779 AHA_0779 838411 839340 + ROK family protein identified by match to protein family HMM PF00480 gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0779 AHA_0780 AHA_0780 epd epd 839390 840400 + erythrose 4-phosphate dehydrogenase NAD-dependent%3B catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0780 AHA_0781 AHA_0781 pgk pgk 840463 841626 + phosphoglycerate kinase Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0781 AHA_0782 AHA_0782 fbaA fbaA 841743 842822 + fructose-bisphosphate aldolase catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0782 AHA_0783 AHA_0783 AHA_0783 843043 844347 + oxidoreductase identified by match to protein family HMM PF01266 gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0783 AHA_0784 AHA_0784 AHA_0784 844532 844945 - hypothetical protein gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0784 AHA_0785 AHA_0785 dsbD dsbD 845070 846842 - thiol:disulfide interchange protein DsbD synonymous name: protein-disulfide reductase DsbD%3B identified by similarity to SP:P36655%3B match to protein family HMM PF02683 gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0785 AHA_0786 AHA_0786 cutA cutA 846839 847246 - divalent-cation tolerance protein CutA identified by match to protein family HMM PF03091 gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0786 AHA_0787 AHA_0787 AHA_0787 847323 847691 + hypothetical protein gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0787 AHA_0788 AHA_0788 AHA_0788 847787 848224 - transmembrane pair identified by match to protein family HMM PF05232 gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0788 AHA_0789 AHA_0789 AHA_0789 848349 849227 + regulatory protein LysR identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0789 AHA_0790 AHA_0790 AHA_0790 849241 850146 - chain A%2C Ygfz protein identified by match to protein family HMM PF01571 gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0790 AHA_0791 AHA_0791 AHA_0791 850260 850529 + hypothetical protein identified by match to protein family HMM PF03937 gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0791 AHA_0792 AHA_0792 AHA_0792 850549 850926 + hypothetical protein gene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0792 AHA_0793 AHA_0793 nadB nadB 851151 852758 - L-aspartate oxidase identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00551 gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0793 AHA_0794 AHA_0794 AHA_0794 852941 853522 + RNA polymerase sigma factor RpoE Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0794 AHA_0795 AHA_0795 rseA rseA 853545 854135 + sigma-E factor negative regulatory protein identified by similarity to SP:P38106%3B match to protein family HMM PF03872%3B match to protein family HMM PF03873 gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0795 AHA_0796 AHA_0796 rseB rseB 854071 855135 + sigma-E factor regulatory protein RseB identified by similarity to SP:P46186%3B match to protein family HMM PF03888 gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0796 AHA_0797 AHA_0797 rseC rseC 855229 855690 + sigma-E factor regulatory protein RseC identified by similarity to SP:P46187%3B match to protein family HMM PF04246 gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0797 AHA_0798 AHA_0798 lepA lepA 855811 857604 + GTP-binding protein LepA binds to the ribosome on the universally-conserved alpha-sarcin loop gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0798 AHA_0799 AHA_0799 lepB lepB 857608 858531 + signal peptidase I identified by similarity to SP:P00803%3B match to protein family HMM PF00717%3B match to protein family HMM TIGR02227 gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0799 AHA_0800 AHA_0800 rnc rnc 858532 859203 + ribonuclease III identified by match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191 gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0800 AHA_0801 AHA_0801 era era 859200 860099 + GTP-binding protein Era identified by match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436%3B match to protein family HMM TIGR00650 gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0801 AHA_0802 AHA_0802 recO recO 860100 860807 + DNA repair protein RecO identified by match to protein family HMM PF02565%3B match to protein family HMM TIGR00613 gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0802 AHA_0803 AHA_0803 pdxJ pdxJ 860970 861707 + pyridoxine 5'-phosphate synthase involved in the de novo synthesis of pyridoxine (Vitamin B6) gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0803 AHA_0804 AHA_0804 AHA_0804 861793 863703 - enterotoxin gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0804 AHA_0805 AHA_0805 AHA_0805 863806 864660 - tagatose bisphosphate family class II aldolase identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01858 gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0805 AHA_0806 AHA_0806 nagA-1 nagA-1 864651 865850 - N-acetylglucosamine-6-phosphate deacetylase identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00221 gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0806 AHA_0807 AHA_0807 AHA_0807 865851 866348 - N-acetyl-galactosamine identified by match to protein family HMM PF03610 gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0807 AHA_0808 AHA_0808 AHA_0808 866332 867210 - N-acetylgalactosamine permease IID component identified by match to protein family HMM PF03613 gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0808 AHA_0809 AHA_0809 AHA_0809 867200 867976 - N-acetylgalactosamine permease IIC component 1 identified by match to protein family HMM PF03609 gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0809 AHA_0810 AHA_0810 AHA_0810 867992 868465 - PTS system N-acetylgalactosamine-specific transporter subunit IIB catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake%3Binvolved in N-acetylgalactosamine transport gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0810 AHA_0811 AHA_0811 AHA_0811 868465 869634 - tagatose-6-phosphate ketose/aldose isomerase identified by match to protein family HMM PF01380%3B match to protein family HMM TIGR02815 gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0811 AHA_0812 AHA_0812 AHA_0812 869647 870960 - D-tagatose-bisphosphate aldolase non-catalytic subunit identified by match to protein family HMM PF08013%3B match to protein family HMM TIGR02810 gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0812 AHA_0813 AHA_0813 AHA_0813 871233 872030 + DNA-binding transcriptional regulator AgaR transcriptional repressor for the agaZVWA and agaSYBCDI operons gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0813 AHA_0814 AHA_0814 AHA_0814 872100 873020 - N-acetylmuramoyl-L-alanine amidase identified by match to protein family HMM PF01471%3B match to protein family HMM PF01510 gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0814 AHA_0815 AHA_0815 AHA_0815 873024 873503 - hypothetical protein identified by match to protein family HMM PF07308 gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0815 AHA_0816 AHA_0816 AHA_0816 873576 876287 - hybrid sensory histidine kinase BarA part of the two-component regulatory system with UvrY%3B involved in the regulation of carbon metabolism via the csrA/csrB regulatory system gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0816 AHA_0817 AHA_0817 rumA rumA 876441 877763 + 23S rRNA 5-methyluridine methyltransferase in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA%3B binds an iron-sulfur cluster [4Fe-4S] gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0817 AHA_0818 AHA_0818 AHA_0818 878030 880240 + GTP pyrophosphokinase identified by match to protein family HMM PF01842%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691 gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0818 AHA_0819 AHA_0819 AHA_0819 880325 881122 + MazG family protein identified by match to protein family HMM PF03819%3B match to protein family HMM TIGR00444 gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0819 AHA_0820 AHA_0820 pyrG pyrG 881264 882901 + CTP synthetase CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0820 AHA_0821 AHA_0821 eno eno 882991 884292 + phosphopyruvate hydratase enolase%3B catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0821 AHA_0822 AHA_0822 AHA_0822 884471 884788 + cell division protein identified by similarity to SP:P0A6S5%3B match to protein family HMM PF04977 gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0822 AHA_0823 AHA_0823 ispD ispD 884781 885512 + 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4-diphosphocytidyl-2C-methyl-D-erythritol synthase%3B MEP cytidylyltransferase%3B MCT%3B catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate%3B involved in isoprenoid and isopentenyl-PP biosynthesis%3B forms homodimers gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0823 AHA_0824 AHA_0824 ispF ispF 885509 885985 + 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase identified by match to protein family HMM PF02542%3B match to protein family HMM TIGR00151 gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0824 AHA_0825 AHA_0825 truD truD 885985 887043 + tRNA pseudouridine synthase D identified by match to protein family HMM PF01142%3B match to protein family HMM TIGR00094 gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0825 AHA_0826 AHA_0826 surE surE 887024 887785 + stationary phase survival protein SurE catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0826 AHA_0827 AHA_0827 pcm pcm 887790 888407 + protein-L-isoaspartate(D-aspartate) O-methyltransferase identified by match to protein family HMM PF01135%3B match to protein family HMM TIGR00080 gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0827 AHA_0828 AHA_0828 AHA_0828 888410 888985 + hypothetical protein gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0828 AHA_0829 AHA_0829 nlpD nlpD 888924 890036 + lipoprotein NlpD identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551 gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0829 AHA_0830 AHA_0830 rpoS rpoS 890084 891067 + RNA polymerase sigma factor RpoS identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02394%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02942 gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0830 AHA_0831 AHA_0831 gcp gcp 891152 892165 - DNA-binding/iron metalloprotein/AP endonuclease in most organisms%2C only the N-terminal domain is present in a single polypeptide%3B in some archaea this domain is fused to a kinase domain%3B this gene is essential for growth in Escherichia coli and Bacillus subtilis%3B the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins%3B the Pyrococcus structure shows DNA-binding properties%2C iron-binding%2C ATP-binding%2C and AP endonuclease activity gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0831 AHA_0832 AHA_0832 rpsU rpsU 892345 892560 + 30S ribosomal protein S21 a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0832 AHA_0833 AHA_0833 AHA_0833 892575 893018 + GatB/YqeY domain-containing protein identified by match to protein family HMM PF02637 gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0833 AHA_0834 AHA_0834 dnaG dnaG 893107 894894 + DNA primase identified by match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM TIGR01391 gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0834 AHA_0835 AHA_0835 AHA_0835 895117 896973 + RNA polymerase sigma factor RpoD identified by match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF04546%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937 gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0835 AHA_0836 AHA_0836 AHA_0836 897169 897245 + tRNA-Met tRNA gene836 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0836 AHA_0837 AHA_0837 AHA_0837 897701 900277 - alpha-amylase identified by similarity to SP:P41131%3B match to protein family HMM PF00128%3B match to protein family HMM PF00801%3B match to protein family HMM PF02806 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0837 AHA_0838 AHA_0838 AHA_0838 900553 901107 - cytochrome B identified by match to protein family HMM PF01292 gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0838 AHA_0839 AHA_0839 AHA_0839 901088 901462 - hypothetical protein gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0839 AHA_0840 AHA_0840 purD purD 901727 903016 - phosphoribosylamine--glycine ligase catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0840 AHA_0841 AHA_0841 purH purH 903127 904719 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase involved in de novo purine biosynthesis gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0841 AHA_0842 AHA_0842 zntR zntR 905131 905568 + zinc-responsive transcriptional regulator mediates expression of the zinc export protein ZntA in response to high levels of zinc%3B member of MerR family of transcriptional regulators gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0842 AHA_0843 AHA_0843 AHA_0843 905558 906094 + riboflavin biosynthesis protein RibD domain-containing protein identified by match to protein family HMM PF01872 gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0843 AHA_0844 AHA_0844 AHA_0844 906075 906440 + hypothetical protein identified by match to protein family HMM PF03889 gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0844 AHA_0845 AHA_0845 AHA_0845 906557 907702 - oxygen-independent coproporphyrinogen III oxidase identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00539 gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0845 AHA_0846 AHA_0846 rdgB rdgB 907837 908433 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042 gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0846 AHA_0847 AHA_0847 AHA_0847 908662 909819 + chloramphenicol resistance protein identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00710 gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0847 AHA_0848 AHA_0848 AHA_0848 909928 910977 + oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01118%3B match to protein family HMM PF01408%3B match to protein family HMM PF02894 gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0848 AHA_0849 AHA_0849 AHA_0849 911635 912186 - ribosomal-protein-alanine acetyltransferase identified by match to protein family HMM PF00583 gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0849 AHA_0850 AHA_0850 AHA_0850 912186 912740 - ribosomal-protein-serine acetyltransferase identified by match to protein family HMM PF00583 gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0850 AHA_0851 AHA_0851 AHA_0851 913092 914861 + elastase identified by similarity to GB:AAF07184.1%3B match to protein family HMM PF01447%3B match to protein family HMM PF02868%3B match to protein family HMM PF03413%3B match to protein family HMM PF04151%3B match to protein family HMM PF07504 gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0851 AHA_0852 AHA_0852 AHA_0852 914913 915806 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0852 AHA_0853 AHA_0853 AHA_0853 916021 917214 + multidrug resistance protein MdtH Confers resistance to norfloxacin and enoxacin gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0853 AHA_0854 AHA_0854 AHA_0854 917279 918352 - outer membrane porin protein identified by match to protein family HMM PF00267 gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0854 AHA_0855 AHA_0855 AHA_0855 918553 919872 - anaerobic C4-dicarboxylate transporter identified by match to protein family HMM PF03605%3B match to protein family HMM TIGR00770 gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0855 AHA_0856 AHA_0856 aspA aspA 920000 921442 - aspartate ammonia-lyase catalyzes the formation of fumarate from aspartate gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0856 AHA_0857 AHA_0857 AHA_0857 921814 922368 + protein FxsA identified by match to protein family HMM PF04186 gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0857 AHA_0858 AHA_0858 AHA_0858 922392 923792 - Na(+) driven multidrug efflux pump identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0858 AHA_0859 AHA_0859 groES groES 923975 924268 + co-chaperonin GroES 10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0859 AHA_0860 AHA_0860 groEL groEL 924310 925944 + molecular chaperone GroEL 60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0860 AHA_0861 AHA_0861 AHA_0861 926082 926537 + oxidoreductase molybdopterin binding subunit identified by match to protein family HMM PF00174 gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0861 AHA_0862 AHA_0862 AHA_0862 926561 928492 + PAS/GGDEF domain-containing protein identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0862 AHA_0863 AHA_0863 AHA_0863 928813 929469 - ribosomal large subunit pseudouridine synthase A identified by match to protein family HMM PF00849 gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0863 AHA_0864 AHA_0864 AHA_0864 929579 932446 - ATP-dependent helicase HepA transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP%2C when it is trapped or immobilized on tightly supercoiled DNA gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0864 AHA_0865 AHA_0865 rrsF rrsF 933020 934569 + 16S ribosomal RNA rRNA gene865 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0865 AHA_0866 AHA_0866 AHA_0866 934767 934842 + tRNA-Glu tRNA gene866 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0866 AHA_0867 AHA_0867 rrlF rrlF 935081 937969 + 23S ribosomal RNA rRNA gene867 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0867 AHA_0868 AHA_0868 rrfF rrfF 938079 938209 + 5S ribosomal RNA rRNA gene868 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0868 AHA_0869 AHA_0869 AHA_0869 938489 938941 + pullulanase gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0869 AHA_0870 AHA_0870 AHA_0870 939149 941296 + ribonucleoside-diphosphate reductase identified by match to protein family HMM PF02867%3B match to protein family HMM TIGR02504 gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0870 AHA_0871 AHA_0871 AHA_0871 941307 941987 + ribonucleotide reductase system gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0871 AHA_0872 AHA_0872 AHA_0872 942196 943566 + PhoH family protein identified by match to protein family HMM PF02562 gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0872 AHA_0873 AHA_0873 AHA_0873 943634 943744 - hypothetical protein gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0873 AHA_0874 AHA_0874 thiQ thiQ 943804 944511 - thiamine ABC transporter ATP-binding protein identified by similarity to SP:P31548%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01277 gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0874 AHA_0875 AHA_0875 thiP thiP 944577 946199 - thiamine/thiamine pyrophosphate ABC transporter permease identified by similarity to SP:P31549%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01253 gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0875 AHA_0876 AHA_0876 thiB thiB 946196 947176 - thiamin/thiamin pyrophosphate ABC transporter periplasmic thiamin/thiamin pyrophospate-binding protein identified by similarity to SP:P31550%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR01254%3B match to protein family HMM TIGR01276 gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0876 AHA_0877 AHA_0877 AHA_0877 947341 947700 + type IV pilus assembly protein PilZ identified by match to protein family HMM PF07238 gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0877 AHA_0878 AHA_0878 AHA_0878 947803 948729 - hypothetical protein gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0878 AHA_0879 AHA_0879 leuD leuD 948846 949445 - isopropylmalate isomerase small subunit catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0879 AHA_0880 AHA_0880 leuC leuC 949458 950855 - isopropylmalate isomerase large subunit dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0880 AHA_0881 AHA_0881 leuB leuB 950888 951973 - 3-isopropylmalate dehydrogenase catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0881 AHA_0882 AHA_0882 leuA-1 leuA-1 951976 953550 - 2-isopropylmalate synthase catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0882 AHA_0883 AHA_0883 AHA_0883 953958 954581 + TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0883 AHA_0884 AHA_0884 AHA_0884 954707 955207 + PAP2 family protein identified by match to protein family HMM PF01569 gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0884 AHA_0885 AHA_0885 AHA_0885 955207 956316 + glycosyl transferase family protein identified by match to protein family HMM TIGR00661 gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0885 AHA_0886 AHA_0886 AHA_0886 956353 956505 + hypothetical protein gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0886 AHA_0887 AHA_0887 ilvB-1 ilvB-1 956895 958613 + acetolactate synthase large subunit identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118 gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0887 AHA_0888 AHA_0888 AHA_0888 958586 958708 + hypothetical protein gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0888 AHA_0889 AHA_0889 ilvH ilvH 958705 959199 + acetolactate synthase 3 regulatory subunit with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0889 AHA_0890 AHA_0890 AHA_0890 959593 961746 - phosphate acetyltransferase catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0890 AHA_0891 AHA_0891 ackA-1 ackA-1 961816 963018 - acetate kinase identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016 gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0891 AHA_0892 AHA_0892 AHA_0892 963321 963761 + hypothetical protein identified by match to protein family HMM PF04217 gene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0892 AHA_0893 AHA_0893 AHA_0893 963817 964317 - hypothetical protein identified by match to protein family HMM PF03887 gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0893 AHA_0894 AHA_0894 AHA_0894 964732 965196 - peroxiredoxin bcp identified by match to protein family HMM PF00578 gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0894 AHA_0895 AHA_0895 AHA_0895 965218 966036 - glycine cleavage system transcriptional repressor gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0895 AHA_0896 AHA_0896 dapA-1 dapA-1 966035 966922 + dihydrodipicolinate synthase catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0896 AHA_0897 AHA_0897 AHA_0897 966915 968039 + NlpB/DapX lipoprotein identified by match to protein family HMM PF06804 gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0897 AHA_0898 AHA_0898 purC purC 968093 969208 + phosphoribosylaminoimidazole-succinocarboxamide synthase catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0898 AHA_0899 AHA_0899 AHA_0899 969340 969942 - short chain dehydrogenase identified by match to protein family HMM PF00106 gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0899 AHA_0900 AHA_0900 AHA_0900 970041 970940 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0900 AHA_0901 AHA_0901 AHA_0901 971067 971654 + hypothetical protein gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0901 AHA_0902 AHA_0902 AHA_0902 971727 972164 + HIT family hydrolase identified by match to protein family HMM PF01230 gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0902 AHA_0903 AHA_0903 AHA_0903 972263 972961 + hypothetical protein gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0903 AHA_0904 AHA_0904 AHA_0904 973032 974030 - hypothetical protein gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0904 AHA_0905 AHA_0905 AHA_0905 974238 976550 + aerobic respiration control sensor protein ArcB sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon%3B hybrid sensory histidine kinase in two-component regulatory system with ArcA gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0905 AHA_0906 AHA_0906 dgt dgt 976579 977934 + deoxyguanosinetriphosphate triphosphohydrolase forms a homotetramer%3B requires magnesium for activity%3B catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0906 AHA_0907 AHA_0907 AHA_0907 978257 978460 + hypothetical protein gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0907 AHA_0908 AHA_0908 AHA_0908 978610 982887 + virulence sensor protein BvgS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0908 AHA_0909 AHA_0909 AHA_0909 982892 984079 + response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00563 gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0909 AHA_0910 AHA_0910 AHA_0910 984118 986094 + chemotaxis transducer identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0910 AHA_0911 AHA_0911 AHA_0911 986214 986318 - hypothetical protein gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0911 AHA_0912 AHA_0912 rfaH rfaH 986320 986871 - transcriptional activator RfaH identified by match to protein family HMM PF02357%3B match to protein family HMM TIGR01955 gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0912 AHA_0913 AHA_0913 metQ metQ 986917 987717 - D-methionine ABC transporter periplasmic D-methionine-binding lipoprotein identified by similarity to SP:P28635%3B match to protein family HMM PF03180%3B match to protein family HMM TIGR00363 gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0913 AHA_0914 AHA_0914 metI metI 987743 988396 - D-methionine ABC transporter permease identified by similarity to SP:P31547%3B match to protein family HMM PF00528 gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0914 AHA_0915 AHA_0915 metN metN 988377 989420 - DL-methionine transporter ATP-binding subunit part of the metNIQ transport system for methionine gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0915 AHA_0916 AHA_0916 AHA_0916 989577 990347 + hypothetical protein gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0916 AHA_0917 AHA_0917 AHA_0917 990456 991214 - polyphosphate glucokinase identified by match to protein family HMM PF00480 gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0917 AHA_0918 AHA_0918 AHA_0918 991298 992539 - (Fe-S)-binding protein identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00276 gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0918 AHA_0919 AHA_0919 AHA_0919 992600 994111 + hypothetical protein identified by match to protein family HMM PF01256%3B match to protein family HMM PF03853%3B match to protein family HMM TIGR00196%3B match to protein family HMM TIGR00197 gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0919 AHA_0920 AHA_0920 AHA_0920 994120 994593 + hypothetical protein identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150 gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0920 AHA_0921 AHA_0921 AHA_0921 994584 996149 + N-acetylmuramoyl-L-alanine amidase identified by match to protein family HMM PF01476%3B match to protein family HMM PF01520 gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0921 AHA_0922 AHA_0922 mutL mutL 996379 998247 + DNA mismatch repair protein This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0922 AHA_0923 AHA_0923 miaA miaA 998340 999257 + tRNA delta(2)-isopentenylpyrophosphate transferase identified by match to protein family HMM PF01715%3B match to protein family HMM TIGR00174 gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0923 AHA_0924 AHA_0924 hfq hfq 999328 999591 + RNA-binding protein Hfq Stimulates the elongation of poly(A) tails gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0924 AHA_0925 AHA_0925 AHA_0925 999655 1000941 + GTP-binding protein HflX identified by match to protein family HMM PF01926 gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0925 AHA_0926 AHA_0926 hflK hflK 1001033 1002184 + HflK protein identified by similarity to SP:P25662%3B match to protein family HMM PF01145%3B match to protein family HMM TIGR01933 gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0926 AHA_0927 AHA_0927 hflC hflC 1002188 1003072 + HflC protein identified by match to protein family HMM PF01145%3B match to protein family HMM TIGR01932 gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0927 AHA_0928 AHA_0928 AHA_0928 1003184 1003372 + hypothetical protein gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0928 AHA_0929 AHA_0929 AHA_0929 1003460 1004431 - octaprenyl-diphosphate synthase identified by match to protein family HMM PF00348 gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0929 AHA_0930 AHA_0930 rplU rplU 1004674 1004985 + 50S ribosomal protein L21 identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061 gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0930 AHA_0931 AHA_0931 rpmA rpmA 1005003 1005260 + 50S ribosomal protein L27 involved in the peptidyltransferase reaction during translation gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0931 AHA_0932 AHA_0932 obgE obgE 1005451 1006653 + GTPase ObgE essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0932 AHA_0933 AHA_0933 AHA_0933 1007048 1008418 + membrane protein identified by match to protein family HMM PF07670 gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0933 AHA_0934 AHA_0934 AHA_0934 1008590 1010284 + AMP-binding family protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00501 gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0934 AHA_0935 AHA_0935 AHA_0935 1010327 1010680 - hypothetical protein gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0935 AHA_0936 AHA_0936 AHA_0936 1010757 1011107 - hypothetical protein gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0936 AHA_0937 AHA_0937 AHA_0937 1011240 1014212 - chemotaxis sensory transducer family protein identified by match to protein family HMM PF00672 gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0937 AHA_0938 AHA_0938 AHA_0938 1014368 1015357 + flavin dependent oxidoreductase identified by match to protein family HMM PF00296 gene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0938 AHA_0939 AHA_0939 AHA_0939 1015593 1016093 + helix-turn-helix domain-containing protein identified by match to protein family HMM PF01381 gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0939 AHA_0940 AHA_0940 apaH apaH 1016259 1017080 - diadenosine tetraphosphatase hydrolyzes P(1)%2CP(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0940 AHA_0941 AHA_0941 apaG apaG 1017087 1017449 - ApaG protein protein associated with Co2+ and Mg2+ efflux gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0941 AHA_0942 AHA_0942 ksgA ksgA 1017454 1018269 - dimethyladenosine transferase catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0942 AHA_0943 AHA_0943 pdxA pdxA 1018271 1019266 - 4-hydroxythreonine-4-phosphate dehydrogenase identified by match to protein family HMM PF04166%3B match to protein family HMM TIGR00557 gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0943 AHA_0944 AHA_0944 surA surA 1019266 1020564 - peptidylprolyl cis-trans isomerase SurA identified by similarity to SP:P21202%3B match to protein family HMM PF00639 gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0944 AHA_0945 AHA_0945 AHA_0945 1020595 1023027 - organic solvent tolerance protein identified by match to protein family HMM PF03968%3B match to protein family HMM PF04453 gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0945 AHA_0946 AHA_0946 AHA_0946 1023202 1024212 + aminoglycoside phosphotransferase identified by match to protein family HMM PF01636 gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0946 AHA_0947 AHA_0947 AHA_0947 1024209 1024877 + nucleotidyltransferase family protein identified by match to protein family HMM PF00483 gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0947 AHA_0948 AHA_0948 djlA djlA 1024897 1025727 + co-chaperone DjlA identified by similarity to SP:P31680%3B match to protein family HMM PF00226 gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0948 AHA_0949 AHA_0949 AHA_0949 1025804 1027147 - xanthine/uracil permease family protein identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916 gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0949 AHA_0950 AHA_0950 AHA_0950 1027911 1029578 - ABC transporter ATP-binding protein ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0950 AHA_0951 AHA_0951 AHA_0951 1029819 1030394 + Crp family transcriptional regulator identified by match to protein family HMM PF00027 gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0951 AHA_0952 AHA_0952 AHA_0952 1030455 1030961 + hypothetical protein gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0952 AHA_0953 AHA_0953 mtnN-1 mtnN-1 1031052 1031825 - MTA/SAH nucleosidase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704 gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0953 AHA_0954 AHA_0954 AHA_0954 1031997 1032851 - lytic transglycosylase%2C catalytic identified by match to protein family HMM PF01464 gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0954 AHA_0955 AHA_0955 AHA_0955 1033036 1033377 - hypothetical protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0955 AHA_0956 AHA_0956 AHA_0956 1033429 1033617 - hypothetical protein gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0956 AHA_0957 AHA_0957 AHA_0957 1033815 1034753 - HTH-type transcriptional regulator XapR identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0957 AHA_0958 AHA_0958 xapA xapA 1035084 1035911 + purine nucleoside phosphorylase catalyzes the formation of a purine and ribose phosphate from a purine nucleoside%3B in E. coli this enzyme functions in xanthosine degradation gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0958 AHA_0959 AHA_0959 AHA_0959 1035937 1037196 + nucleoside permease identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804 gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0959 AHA_0960 AHA_0960 deoC-1 deoC-1 1037259 1038062 + deoxyribose-phosphate aldolase identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126 gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0960 AHA_0961 AHA_0961 AHA_0961 1038119 1039030 + hypothetical protein identified by match to protein family HMM PF00892 gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0961 AHA_0962 AHA_0962 AHA_0962 1039036 1040049 - nucleotide sugar epimerase identified by similarity to GB:AAD50494.1%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0962 AHA_0963 AHA_0963 AHA_0963 1040372 1040998 + hypothetical protein identified by match to protein family HMM PF02588 gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0963 AHA_0964 AHA_0964 hutD hutD 1041104 1041892 - hemin ABC transporter ATP-binding protein HutD identified by match to protein family HMM PF00005 gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0964 AHA_0965 AHA_0965 AHA_0965 1041907 1042935 - iron ABC transporter permease identified by match to protein family HMM PF01032 gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0965 AHA_0966 AHA_0966 AHA_0966 1042935 1043774 - hemin ABC transporter periplasmic protein identified by match to protein family HMM PF01497 gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0966 AHA_0967 AHA_0967 AHA_0967 1043943 1044455 + HuvX protein identified by match to protein family HMM PF06228 gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0967 AHA_0968 AHA_0968 AHA_0968 1044452 1045009 + HutZ protein identified by match to protein family HMM PF01243 gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0968 AHA_0969 AHA_0969 AHA_0969 1045080 1045484 - lipoprotein gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0969 AHA_0970 AHA_0970 AHA_0970 1045524 1046075 - isochorismatase family protein identified by match to protein family HMM PF00857 gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0970 AHA_0971 AHA_0971 AHA_0971 1046136 1047104 - hypothetical protein identified by match to protein family HMM PF04187 gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0971 AHA_0972 AHA_0972 hgpB hgpB 1047293 1049386 + outer-membrane heme receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01785%3B match to protein family HMM TIGR01786 gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0972 AHA_0973 AHA_0973 hcaT hcaT 1049675 1050814 + major facilitator superfamily transporter phenyl propionate permease (PPP) family protein identified by match to protein family HMM PF01306%3B match to protein family HMM PF07690 gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0973 AHA_0974 AHA_0974 AHA_0974 1050899 1051108 - hypothetical protein identified by match to protein family HMM PF01381 gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0974 AHA_0975 AHA_0975 AHA_0975 1051116 1051727 - hypothetical protein gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0975 AHA_0976 AHA_0976 AHA_0976 1051947 1055447 + proline sensor PrlS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0976 AHA_0977 AHA_0977 AHA_0977 1055820 1058429 + chitinase identified by match to protein family HMM PF00704%3B match to protein family HMM PF00801%3B match to protein family HMM PF02839 gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0977 AHA_0978 AHA_0978 AHA_0978 1058502 1060880 + metalloprotease gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0978 AHA_0979 AHA_0979 AHA_0979 1060787 1062886 + basic endochitinase identified by match to protein family HMM PF00182%3B match to protein family HMM PF00801%3B match to protein family HMM PF02839 gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0979 AHA_0980 AHA_0980 AHA_0980 1062945 1063745 - ribosomal RNA large subunit methyltransferase A gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0980 AHA_0981 AHA_0981 crp crp 1063871 1064509 - cAMP-regulatory protein complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0981 AHA_0982 AHA_0982 AHA_0982 1064626 1065225 + hypothetical protein identified by match to protein family HMM PF02566 gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0982 AHA_0983 AHA_0983 AHA_0983 1065275 1065571 + hypothetical protein gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0983 AHA_0984 AHA_0984 AHA_0984 1065629 1066159 - lipoprotein gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0984 AHA_0985 AHA_0985 AHA_0985 1066175 1067044 - phosphoribulokinase%2C plasmid identified by match to protein family HMM PF00485 gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0985 AHA_0986 AHA_0986 AHA_0986 1067220 1067663 - hypothetical protein gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0986 AHA_0987 AHA_0987 AHA_0987 1067660 1068004 - hypothetical protein gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0987 AHA_0988 AHA_0988 arnT arnT 1068004 1069647 - 4-amino-4-deoxy-L-arabinose transferase catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0988 AHA_0989 AHA_0989 AHA_0989 1069717 1070616 - polysaccharide deacetylase identified by match to protein family HMM PF01522 gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0989 AHA_0990 AHA_0990 AHA_0990 1070609 1072600 - bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase Bifunctional polymyxin resistance arnA protein%3B catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose%3B active in certain mutant strains gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0990 AHA_0991 AHA_0991 AHA_0991 1072597 1073577 - UDP-phosphate 4-amino-4-deoxy-L-arabinose transferase identified by match to protein family HMM PF00535 gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0991 AHA_0992 AHA_0992 AHA_0992 1073584 1074720 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0992 AHA_0993 AHA_0993 AHA_0993 1074941 1076287 + UDP-glucose dehydrogenase identified by match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0993 AHA_0994 AHA_0994 AHA_0994 1076717 1076959 - enolase identified by match to protein family HMM PF06794 gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0994 AHA_0995 AHA_0995 AHA_0995 1078185 1079267 - alpha/beta hydrolase identified by match to protein family HMM PF00561 gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0995 AHA_0996 AHA_0996 AHA_0996 1077049 1078203 + diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0996 AHA_0997 AHA_0997 AHA_0997 1079236 1080135 - chemotaxis protein CheV identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584 gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0997 AHA_0998 AHA_0998 AHA_0998 1080317 1080865 - hypothetical protein gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0998 AHA_0999 AHA_0999 AHA_0999 1081043 1081249 + hypothetical protein identified by match to protein family HMM TIGR02443 gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0999 AHA_1000 AHA_1000 slyD slyD 1081396 1082034 + FKBP-type peptidyl-prolyl cis-trans isomerase SlyD identified by similarity to SP:P0A9L2%3B match to protein family HMM PF00254 gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1000 AHA_1001 AHA_1001 AHA_1001 1082099 1082314 - hypothetical protein identified by match to protein family HMM PF04102 gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1001 AHA_1002 AHA_1002 AHA_1002 1082329 1083297 - vegetatible incompatibility protein HET-E-1 identified by match to protein family HMM PF00400 gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1002 AHA_1003 AHA_1003 fkpA fkpA 1083417 1084223 + FKBP-type peptidyl-prolyl cis-trans isomerase FkpA identified by similarity to SP:P45523%3B match to protein family HMM PF00254%3B match to protein family HMM PF01346 gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1003 AHA_1004 AHA_1004 AHA_1004 1084375 1085781 + sigma-54 factor interaction domain-containing protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1004 AHA_1005 AHA_1005 AHA_1005 1085871 1086740 - hypothetical protein identified by match to protein family HMM PF07719 gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1005 AHA_1006 AHA_1006 AHA_1006 1086854 1087189 - hypothetical protein gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1006 AHA_1007 AHA_1007 AHA_1007 1087316 1087657 - hypothetical protein gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1007 AHA_1008 AHA_1008 AHA_1008 1087744 1089582 - 5'-nucleotidase identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1008 AHA_1009 AHA_1009 AHA_1009 1089815 1091356 - EAL domain-containing protein identified by match to protein family HMM PF00563 gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1009 AHA_1010 AHA_1010 AHA_1010 1091535 1092389 - import inner membrane translocase subunit Tim44 identified by match to protein family HMM PF04280 gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1010 AHA_1011 AHA_1011 AHA_1011 1092570 1092671 + hypothetical protein gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1011 AHA_1012 AHA_1012 dnaB dnaB 1092822 1094216 + replicative DNA helicase identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665 gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1012 AHA_1013 AHA_1013 AHA_1013 1094283 1094375 + hypothetical protein gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1013 AHA_1014 AHA_1014 AHA_1014 1094442 1094534 + hypothetical protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1014 AHA_1015 AHA_1015 alr-1 alr-1 1094685 1095758 + alanine racemase identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492 gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1015 AHA_1016 AHA_1016 AHA_1016 1095872 1096120 - ferredoxin identified by match to protein family HMM PF00037 gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1016 AHA_1017 AHA_1017 yegQ yegQ 1096122 1097483 - U32 family peptidase identified by match to protein family HMM PF01136 gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1017 AHA_1018 AHA_1018 AHA_1018 1097716 1098453 - EAL domain-containing protein identified by match to protein family HMM PF00563 gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1018 AHA_1019 AHA_1019 AHA_1019 1098706 1099428 + hypothetical protein gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1019 AHA_1020 AHA_1020 AHA_1020 1099458 1099937 + adhesin gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1020 AHA_1021 AHA_1021 AHA_1021 1100017 1102452 + hypothetical protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1021 AHA_1022 AHA_1022 AHA_1022 1102472 1103629 + hypothetical protein gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1022 AHA_1023 AHA_1023 AHA_1023 1103654 1104292 - LuxR family DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1023 AHA_1025 AHA_1025 AHA_1025 1104414 1107842 + response regulator/sensor histidine kinase identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1025 AHA_1026 AHA_1026 AHA_1026 1108232 1108316 - tRNA-Tyr tRNA gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1026 AHA_1027 AHA_1027 AHA_1027 1108348 1108432 - tRNA-Tyr tRNA gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1027 AHA_1028 AHA_1028 AHA_1028 1108464 1108548 - tRNA-Tyr tRNA gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1028 AHA_1029 AHA_1029 AHA_1029 1108869 1110116 + cysteine desulfurase identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01976 gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1029 AHA_1030 AHA_1030 cheB-1 cheB-1 1110170 1111231 - chemotaxis-specific methylesterase regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1030 AHA_1031 AHA_1031 AHA_1031 1111242 1111712 - chemoreceptor glutamine deamidase CheD catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1031 AHA_1032 AHA_1032 cheR-1 cheR-1 1111723 1112526 - chemotaxis protein CheR identified by match to protein family HMM PF01739%3B match to protein family HMM PF03705 gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1032 AHA_1033 AHA_1033 AHA_1033 1112583 1114751 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015 gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1033 AHA_1034 AHA_1034 cheW-1 cheW-1 1114822 1115394 - chemotaxis protein CheW identified by similarity to GB:AAB53941.1%3B match to protein family HMM PF01584 gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1034 AHA_1035 AHA_1035 AHA_1035 1115407 1117329 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1035 AHA_1036 AHA_1036 cheA-1 cheA-1 1117345 1119558 - chemotaxis protein CheA identified by similarity to SP:P07363%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895 gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1036 AHA_1037 AHA_1037 rsbV rsbV 1119585 1119911 - anti-sigma-B factor antagonist identified by similarity to SP:P17903%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00377 gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1037 AHA_1038 AHA_1038 AHA_1038 1119926 1120294 - chemotaxis protein CheY identified by match to protein family HMM PF00072 gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1038 AHA_1039 AHA_1039 AHA_1039 1120304 1121518 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015 gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1039 AHA_1040 AHA_1040 AHA_1040 1121822 1122910 - 3-oxoacyl-ACP synthase FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs%3B in Pseudomonas this protein is involved in quinolone signal biosynthesis gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1040 AHA_1041 AHA_1041 AHA_1041 1123113 1124054 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1041 AHA_1042 AHA_1042 AHA_1042 1124090 1124791 + amino acid transporter LysE identified by match to protein family HMM PF01810 gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1042 AHA_1043 AHA_1043 AHA_1043 1124894 1126753 + U32 family peptidase identified by match to protein family HMM PF01136 gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1043 AHA_1044 AHA_1044 AHA_1044 1126842 1127504 + hypothetical protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1044 AHA_1045 AHA_1045 AHA_1045 1127520 1127996 - methylated-DNA--protein-cysteine methyltransferase identified by match to protein family HMM PF01035%3B match to protein family HMM PF02870%3B match to protein family HMM TIGR00589 gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1045 AHA_1046 AHA_1046 AHA_1046 1127993 1129558 - AraC family transcriptional regulator identified by match to protein family HMM PF00165%3B match to protein family HMM PF00730%3B match to protein family HMM PF02805%3B match to protein family HMM PF06029 gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1046 AHA_1047 AHA_1047 AHA_1047 1129768 1130169 + hypothetical protein gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1047 AHA_1048 AHA_1048 AHA_1048 1130239 1131813 - thermostable carboxypeptidase 1 identified by match to protein family HMM PF02074 gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1048 AHA_1049 AHA_1049 AHA_1049 1131851 1132432 - Smr domain-containing protein identified by match to protein family HMM PF01713 gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1049 AHA_1050 AHA_1050 AHA_1050 1132586 1132771 - hypothetical protein gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1050 AHA_1051 AHA_1051 AHA_1051 1132904 1133797 - GumN protein identified by match to protein family HMM PF07446 gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1051 AHA_1052 AHA_1052 AHA_1052 1134385 1135212 - short-chain dehydrogenase/reductase identified by match to protein family HMM PF00106 gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1052 AHA_1053 AHA_1053 AHA_1053 1135331 1136776 - outermembrane porin identified by match to protein family HMM PF03573 gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1053 AHA_1054 AHA_1054 AHA_1054 1137283 1139220 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1054 AHA_1055 AHA_1055 AHA_1055 1139338 1140234 - hypothetical protein identified by match to protein family HMM PF00892 gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1055 AHA_1056 AHA_1056 AHA_1056 1140329 1141831 - GntP protein identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00791 gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1056 AHA_1057 AHA_1057 AHA_1057 1141828 1142772 - NAD-dependent epimerase/dehydratase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1057 AHA_1058 AHA_1058 AHA_1058 1142808 1143581 - AP endonuclease identified by match to protein family HMM PF01261 gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1058 AHA_1059 AHA_1059 AHA_1059 1143578 1144210 - aldolase identified by match to protein family HMM PF00596 gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1059 AHA_1060 AHA_1060 AHA_1060 1144203 1145453 - hypothetical protein identified by match to protein family HMM PF07005 gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1060 AHA_1061 AHA_1061 AHA_1061 1145450 1146358 - 6-phosphogluconate dehydrogenase identified by match to protein family HMM PF03446 gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1061 AHA_1062 AHA_1062 AHA_1062 1146614 1147405 + DeoR family transcriptional regulator identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1062 AHA_1063 AHA_1063 AHA_1063 1147784 1150480 - hypothetical protein gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1063 AHA_1064 AHA_1064 AHA_1064 1151726 1154476 + invasin family protein identified by similarity to SP:P11922%3B match to protein family HMM PF01476 gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1064 AHA_1065 AHA_1065 AHA_1065 1154664 1155332 + hypothetical protein gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1065 AHA_1066 AHA_1066 AHA_1066 1155644 1157251 + intimin/invasin family protein identified by similarity to SP:P11922%3B match to protein family HMM PF02369 gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1066 AHA_1067 AHA_1067 AHA_1067 1157771 1158517 + hypothetical protein gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1067 AHA_1068 AHA_1068 AHA_1068 1158514 1160730 + sensory box/GGDEF family protein identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1068 AHA_1069 AHA_1069 AHA_1069 1161152 1161820 - transcriptional regulator identified by match to protein family HMM PF00486 gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1069 AHA_1070 AHA_1070 AHA_1070 1162913 1163206 + transcriptional activator protein identified by match to protein family HMM PF00486 gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1070 AHA_1071 AHA_1071 AHA_1071 1163620 1163766 - hypothetical protein gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1071 AHA_1072 AHA_1072 AHA_1072 1164200 1165459 - protein UmuC identified by match to protein family HMM PF00817 gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1072 AHA_1073 AHA_1073 AHA_1073 1165440 1165883 - protein UmuD identified by match to protein family HMM PF00717 gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1073 AHA_1074 AHA_1074 AHA_1074 1166357 1168504 + hypothetical protein gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1074 AHA_1075 AHA_1075 AHA_1075 1168501 1170042 + hypothetical protein gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1075 AHA_1076 AHA_1076 AHA_1076 1169945 1175374 + hypothetical protein gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1076 AHA_1077 AHA_1077 AHA_1077 1175428 1176750 - modification methylase DdeI identified by match to protein family HMM PF00145%3B match to protein family HMM TIGR00675 gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1077 AHA_1078 AHA_1078 AHA_1078 1178163 1180091 - hypothetical protein identified by match to protein family HMM PF03235 gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1078 AHA_1079 AHA_1079 AHA_1079 1180233 1180763 - DNA repair protein RadC identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608 gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1079 AHA_1080 AHA_1080 AHA_1080 1181510 1181935 - hypothetical protein gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1080 AHA_1081 AHA_1081 AHA_1081 1181955 1182302 - hypothetical protein identified by match to protein family HMM PF06803 gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1081 AHA_1082 AHA_1082 AHA_1082 1182386 1182835 - hypothetical protein gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1082 AHA_1083 AHA_1083 AHA_1083 1182848 1183171 - hypothetical protein gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1083 AHA_1084 AHA_1084 AHA_1084 1183418 1183768 + helix-turn-helix domain-containing protein identified by match to protein family HMM PF01381 gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1084 AHA_1085 AHA_1085 AHA_1085 1183780 1184619 - hypothetical protein identified by similarity to GB:AAN68106.1 gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1085 AHA_1086 AHA_1086 AHA_1086 1184757 1185746 - hypothetical protein gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1086 AHA_1087 AHA_1087 AHA_1087 1185841 1186791 - hypothetical protein gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1087 AHA_1088 AHA_1088 AHA_1088 1187027 1187103 - tRNA-Arg tRNA gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1088 AHA_1089 AHA_1089 AHA_1089 1187154 1188308 - hypothetical protein gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1089 AHA_1090 AHA_1090 AHA_1090 1188389 1189123 + hypothetical protein gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1090 AHA_1091 AHA_1091 AHA_1091 1189139 1189570 + hypothetical protein identified by match to protein family HMM PF04164 gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1091 AHA_1092 AHA_1092 pheA pheA 1189671 1190843 - chorismate mutase/prephenate dehydratase identified by match to protein family HMM PF00800%3B match to protein family HMM PF01817%3B match to protein family HMM TIGR01797 gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1092 AHA_1094 AHA_1094 AHA_1094 1191186 1191785 + hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509 gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1094 AHA_1095 AHA_1095 AHA_1095 1191811 1192089 + hypothetical protein gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1095 AHA_1096 AHA_1096 AHA_1096 1192135 1193007 + hypothetical protein gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1096 AHA_1097 AHA_1097 AHA_1097 1193103 1193651 + hypothetical protein gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1097 AHA_1098 AHA_1098 AHA_1098 1193836 1194465 + hypothetical protein gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1098 AHA_1099 AHA_1099 AHA_1099 1194638 1195582 + hypothetical protein identified by match to protein family HMM PF04463 gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1099 AHA_1100 AHA_1100 AHA_1100 1195646 1196533 + MerR family transcriptional regulator identified by match to protein family HMM PF00376 gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1100 AHA_1101 AHA_1101 phrB phrB 1196530 1197951 + deoxyribodipyrimidine photolyase identified by match to protein family HMM PF00875%3B match to protein family HMM PF03441 gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1101 AHA_1102 AHA_1102 AHA_1102 1197953 1198381 + transcriptional regulator identified by match to protein family HMM PF07366 gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1102 AHA_1103 AHA_1103 AHA_1103 1198378 1199115 + short chain dehydrogenase/reductase family oxidoreductase identified by match to protein family HMM PF00106 gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1103 AHA_1104 AHA_1104 AHA_1104 1199112 1200371 + amino-oxidase identified by match to protein family HMM PF01593 gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1104 AHA_1105 AHA_1105 AHA_1105 1200368 1201150 + plasmid partition ParA protein identified by match to protein family HMM PF07103 gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1105 AHA_1106 AHA_1106 AHA_1106 1201150 1202406 + cyclopropane-fatty-acyl-phospholipid synthase identified by match to protein family HMM PF02353 gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1106 AHA_1107 AHA_1107 AHA_1107 1202885 1203103 + hypothetical protein gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1107 AHA_1108 AHA_1108 AHA_1108 1203120 1203611 + hypothetical protein gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1108 AHA_1109 AHA_1109 AHA_1109 1203611 1204168 + lipoprotein gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1109 AHA_1110 AHA_1110 AHA_1110 1204293 1204760 + DPS family protein identified by match to protein family HMM PF00210 gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1110 AHA_1111 AHA_1111 AHA_1111 1205088 1206737 + hydroxylamine reductase catalyzes the reduction of hydroxylamine to ammonia and water gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1111 AHA_1112 AHA_1112 AHA_1112 1206852 1207871 + (Fe-S)-binding protein identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970 gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1112 AHA_1113 AHA_1113 galE-1 galE-1 1207957 1208982 + UDP-glucose 4-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179 gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1113 AHA_1114 AHA_1114 AHA_1114 1209157 1209906 - outer membrane protein identified by match to protein family HMM PF01323 gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1114 AHA_1115 AHA_1115 AHA_1115 1209933 1210028 + hypothetical protein gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1115 AHA_1116 AHA_1116 AHA_1116 1210105 1210192 + tRNA-Ser tRNA gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1116 AHA_1117 AHA_1117 AHA_1117 1210730 1211524 + transcriptional activator protein AhyR/asaR identified by match to protein family HMM PF00196%3B match to protein family HMM PF03472%3B match to protein family HMM PF04967 gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1117 AHA_1118 AHA_1118 AHA_1118 1211755 1212273 + HcpA-like protein identified by match to protein family HMM PF05638 gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1118 AHA_1119 AHA_1119 AHA_1119 1212752 1215535 + Rhs element Vgr protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646 gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1119 AHA_1120 AHA_1120 AHA_1120 1215532 1216332 + type III secretion protein gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1120 AHA_1121 AHA_1121 AHA_1121 1216332 1218284 + hypothetical protein gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1121 AHA_1122 AHA_1122 AHA_1122 1218284 1218982 + hypothetical protein gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1122 AHA_1123 AHA_1123 AHA_1123 1219157 1219858 + hypothetical protein gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1123 AHA_1124 AHA_1124 AHA_1124 1219986 1220870 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1124 AHA_1125 AHA_1125 budA budA 1220980 1221759 + alpha-acetolactate decarboxylase identified by match to protein family HMM PF03306%3B match to protein family HMM TIGR01252 gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1125 AHA_1126 AHA_1126 alsS alsS 1221787 1223457 + acetolactate synthase catalyzes the formation of 2-acetolactate from pyruvate in stationary phase gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1126 AHA_1127 AHA_1127 AHA_1127 1223551 1224129 - 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein identified by match to protein family HMM PF01965%3B match to protein family HMM TIGR01383 gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1127 AHA_1128 AHA_1128 panE panE 1224163 1225110 - 2-dehydropantoate 2-reductase identified by match to protein family HMM PF02558%3B match to protein family HMM TIGR00745 gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1128 AHA_1129 AHA_1129 AHA_1129 1225468 1225950 + nucleotide-binding protein nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1129 AHA_1130 AHA_1130 AHA_1130 1226053 1226895 - outer membrane protein identified by match to protein family HMM PF03502 gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1130 AHA_1131 AHA_1131 AHA_1131 1227052 1228431 - muropeptide permease AmpG identified by match to protein family HMM PF07690 gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1131 AHA_1132 AHA_1132 AHA_1132 1228962 1229513 - peptidyl-prolyl cis-trans isomerase B identified by match to protein family HMM PF00160 gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1132 AHA_1133 AHA_1133 AHA_1133 1229529 1230101 - hypothetical protein identified by match to protein family HMM PF03923 gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1133 AHA_1134 AHA_1134 AHA_1134 1230126 1231268 - ribosomal RNA small subunit methyltransferase D identified by match to protein family HMM PF05175 gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1134 AHA_1135 AHA_1135 AHA_1135 1231475 1231783 + BolA protein identified by match to protein family HMM PF01722 gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1135 AHA_1136 AHA_1136 nqrA nqrA 1232225 1233568 + Na(+)-translocating NADH-quinone reductase subunit A uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1136 AHA_1137 AHA_1137 nqrB nqrB 1233572 1234801 + Na(+)-translocating NADH-quinone reductase subunit B uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1137 AHA_1138 AHA_1138 nqrC nqrC 1234791 1235579 + Na(+)-translocating NADH-quinone reductase subunit C uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1138 AHA_1139 AHA_1139 nqrD nqrD 1235572 1236204 + NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01939 gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1139 AHA_1140 AHA_1140 nqrE-1 nqrE-1 1236208 1236804 + Na(+)-translocating NADH-quinone reductase subunit E Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol. gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1140 AHA_1141 AHA_1141 nqrF nqrF 1236822 1238045 + Na(+)-translocating NADH-quinone reductase subunit F uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1141 AHA_1142 AHA_1142 AHA_1142 1238049 1239089 + thiamine biosynthesis lipoprotein ApbE identified by match to protein family HMM PF02424 gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1142 AHA_1143 AHA_1143 AHA_1143 1239101 1239325 + hypothetical protein identified by match to protein family HMM PF04400 gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1143 AHA_1144 AHA_1144 AHA_1144 1239413 1239625 - hypothetical protein gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1144 AHA_1145 AHA_1145 dinB dinB 1239758 1240810 + DNA polymerase IV involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1145 AHA_1146 AHA_1146 AHA_1146 1240879 1243020 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1146 AHA_1147 AHA_1147 gcvA gcvA 1243304 1244224 + DNA-binding transcriptional activator GcvA Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1147 AHA_1148 AHA_1148 AHA_1148 1244217 1244855 + esterase/lipase/thioesterase family protein gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1148 AHA_1149 AHA_1149 AHA_1149 1244888 1245274 + hypothetical protein identified by match to protein family HMM PF04241 gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1149 AHA_1150 AHA_1150 AHA_1150 1245267 1246361 + RNA 2'-O-ribose methyltransferase gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1150 AHA_1151 AHA_1151 AHA_1151 1246432 1246872 - hypothetical protein gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1151 AHA_1152 AHA_1152 AHA_1152 1246993 1248000 - isocitrate dehydrogenase catalyzes the formation of 2-oxoglutarate from isocitrate gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1152 AHA_1153 AHA_1153 xni xni 1248147 1249052 - exodeoxyribonuclease IX identified by match to protein family HMM PF01367%3B match to protein family HMM PF02739 gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1153 AHA_1154 AHA_1154 AHA_1154 1249081 1250436 - lysine decarboxylase family protein identified by match to protein family HMM PF03641 gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1154 AHA_1155 AHA_1155 AHA_1155 1250587 1252206 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1155 AHA_1156 AHA_1156 AHA_1156 1252297 1254567 - hypothetical protein identified by match to protein family HMM PF00515 gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1156 AHA_1157 AHA_1157 queF queF 1254702 1255610 - 7-cyano-7-deazaguanine reductase catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1157 AHA_1158 AHA_1158 AHA_1158 1255708 1256256 + Syd protein identified by match to protein family HMM PF07348 gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1158 AHA_1159 AHA_1159 AHA_1159 1256326 1257111 - Zn-ribbon-containing protein gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1159 AHA_1160 AHA_1160 AHA_1160 1257500 1257736 - hypothetical protein gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1160 AHA_1161 AHA_1161 AHA_1161 1257794 1258093 - hypothetical protein identified by similarity to GB:AAW85105.1 gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1161 AHA_1162 AHA_1162 AHA_1162 1258163 1259191 - hypothetical protein gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1162 AHA_1163 AHA_1163 AHA_1163 1259455 1259790 + hypothetical protein identified by match to protein family HMM PF04287 gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1163 AHA_1164 AHA_1164 AHA_1164 1259787 1260560 + RNA pseudouridine synthase family protein identified by match to protein family HMM PF00849 gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1164 AHA_1165 AHA_1165 AHA_1165 1260637 1261077 + protein MioC identified by match to protein family HMM PF00258 gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1165 AHA_1166 AHA_1166 lamB lamB 1261489 1262922 + maltoporin porin involved in the transport of maltose and maltodextrins gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1166 AHA_1167 AHA_1167 AHA_1167 1262999 1263985 + maltose operon periplasmic protein identified by match to protein family HMM PF07148 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1167 AHA_1168 AHA_1168 ptsG ptsG 1264417 1265847 + PTS system glucose-specific transporter subunit IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1168 AHA_1169 AHA_1169 AHA_1169 1266028 1266411 - hypothetical protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1169 AHA_1170 AHA_1170 dapD dapD 1266540 1267367 - 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-carboxylate N-succinyltransferase catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1170 AHA_1171 AHA_1171 glnD glnD 1267534 1270188 - protein-P-II uridylyltransferase identified by similarity to SP:P27249%3B match to protein family HMM PF01842%3B match to protein family HMM PF01909%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR01693 gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1171 AHA_1172 AHA_1172 map map 1270286 1271074 - methionine aminopeptidase identified by similarity to SP:P07906%3B match to protein family HMM PF00557%3B match to protein family HMM TIGR00500 gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1172 AHA_1173 AHA_1173 rpsB rpsB 1271434 1272162 + 30S ribosomal protein S2 one of the last subunits in the assembly of the 30S subunit%3B absence of S2 does not inhibit assembly but results in an inactive subunit gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1173 AHA_1174 AHA_1174 tsf tsf 1272267 1273148 + elongation factor Ts EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1174 AHA_1175 AHA_1175 pyrH pyrH 1273220 1273954 + uridylate kinase Catalyzes the phosphorylation of UMP to UDP gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1175 AHA_1176 AHA_1176 frr frr 1274049 1274606 + ribosome recycling factor Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1176 AHA_1177 AHA_1177 uppS uppS 1274679 1275455 + undecaprenyl diphosphate synthase identified by match to protein family HMM PF01255%3B match to protein family HMM TIGR00055 gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1177 AHA_1178 AHA_1178 cdsA cdsA 1275482 1276339 + phosphatidate cytidylyltransferase identified by match to protein family HMM PF01148 gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1178 AHA_1179 AHA_1179 dxr dxr 1276403 1277596 + 1-deoxy-D-xylulose 5-phosphate reductoisomerase catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1179 AHA_1180 AHA_1180 ecfE ecfE 1277679 1279031 + peptidase EcfE identified by similarity to SP:P37764%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054 gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1180 AHA_1181 AHA_1181 AHA_1181 1279066 1281489 + OMP85 family outer membrane protein identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244 gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1181 AHA_1182 AHA_1182 AHA_1182 1281638 1282150 + outer membrane protein identified by match to protein family HMM PF03938 gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1182 AHA_1183 AHA_1183 lpxD lpxD 1282154 1283173 + UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1183 AHA_1184 AHA_1184 fabZ fabZ 1283198 1283659 + (3R)-hydroxymyristoyl-ACP dehydratase in Pseudomonas aeruginosa this enzyme is a trimer of dimers%3B essential for membrane formation%3B performs third step of type II fatty acid biosynthesis%3B catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1184 AHA_1185 AHA_1185 lpxA lpxA 1283665 1284456 + UDP-N-acetylglucosamine acyltransferase catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1185 AHA_1186 AHA_1186 lpxB lpxB 1284449 1285588 + lipid-A-disaccharide synthase catalyzes the formation of lipid A disaccharide from UDP-2%2C3-diacylglucosamine and 2%2C3-diacylglucosamine-1-phosphate%2C lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1186 AHA_1187 AHA_1187 rnhB rnhB 1285619 1286254 + ribonuclease HII RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1187 AHA_1188 AHA_1188 dnaE dnaE 1286293 1289772 + DNA polymerase III subunit alpha identified by match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594 gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1188 AHA_1189 AHA_1189 accA accA 1289753 1290739 + acetyl-CoA carboxylase%2C carboxyl transferase subunit alpha identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513 gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1189 AHA_1190 AHA_1190 AHA_1190 1291144 1292664 + DNA-binding transcriptional activator CadC regulates the cadBA operon gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1190 AHA_1191 AHA_1191 cadB cadB 1293430 1294764 + lysine/cadaverine antiporter antiporter protein responsible for lysine import and cadaverine export%3B member of the lysine-dependent acid resistance system 4 (AR4)%3B inner membrane protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1191 AHA_1192 AHA_1192 AHA_1192 1294841 1296973 + lysine decarboxylase%2C constitutive identified by match to protein family HMM PF01276%3B match to protein family HMM PF03709%3B match to protein family HMM PF03711 gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1192 AHA_1193 AHA_1193 pdxY-1 pdxY-1 1297046 1297912 + pyridoxal kinase identified by similarity to SP:P77150%3B match to protein family HMM TIGR00687 gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1193 AHA_1194 AHA_1194 AHA_1194 1297922 1299343 - cation (Na+-coupled) multidrug resistance efflux pump identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1194 AHA_1195 AHA_1195 AHA_1195 1299450 1300358 - HTH-type transcriptional regulator YcaN identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1195 AHA_1196 AHA_1196 AHA_1196 1300872 1302158 + serine transporter family protein identified by similarity to SP:P0AAD6%3B match to protein family HMM PF01490%3B match to protein family HMM TIGR00814 gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1196 AHA_1197 AHA_1197 AHA_1197 1302226 1303266 - ribonuclease Z identified by match to protein family HMM PF00753 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1197 AHA_1198 AHA_1198 AHA_1198 1303423 1304325 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1198 AHA_1199 AHA_1199 AHA_1199 1304345 1305364 - dienelactone hydrolase domain-containing protein gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1199 AHA_1200 AHA_1200 AHA_1200 1305310 1306221 - dienelactone hydrolase domain-containing protein gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1200 AHA_1201 AHA_1201 AHA_1201 1306469 1307362 + HTH-type transcriptional regulator YcjZ identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1201 AHA_1202 AHA_1202 AHA_1202 1307499 1308779 + inner membrane protein YjeH uncharacterized member of the APC superfamily of amino acid transporters%3B unknown function gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1202 AHA_1203 AHA_1203 AHA_1203 1308820 1309359 - ribosomal-protein-alanine N-acetyltransferase identified by match to protein family HMM PF00583 gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1203 AHA_1204 AHA_1204 AHA_1204 1309443 1311182 - ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1204 AHA_1205 AHA_1205 AHA_1205 1311547 1311984 - hypothetical protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1205 AHA_1206 AHA_1206 AHA_1206 1312096 1314141 - M13 family peptidase identified by match to protein family HMM PF01431%3B match to protein family HMM PF05649 gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1206 AHA_1207 AHA_1207 tilS tilS 1314255 1315595 + tRNA(Ile)-lysidine synthetase identified by similarity to SP:P52097%3B match to protein family HMM PF01171%3B match to protein family HMM TIGR02432%3B match to protein family HMM TIGR02433 gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1207 AHA_1208 AHA_1208 AHA_1208 1315671 1316606 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1208 AHA_1209 AHA_1209 AHA_1209 1316704 1318644 + Kef-type K+ transport system membrane protein identified by match to protein family HMM PF00999%3B match to protein family HMM PF02080%3B match to protein family HMM PF02254 gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1209 AHA_1210 AHA_1210 AHA_1210 1318726 1319871 - patatin identified by match to protein family HMM PF01734 gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1210 AHA_1211 AHA_1211 AHA_1211 1319993 1320811 - esterase/lipase gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1211 AHA_1212 AHA_1212 AHA_1212 1320934 1321515 - transcriptional regulator identified by match to protein family HMM PF00440 gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1212 AHA_1213 AHA_1213 AHA_1213 1321603 1322247 - positive regulator AgmR identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1213 AHA_1214 AHA_1214 AHA_1214 1322406 1323032 + glutathione S-transferase identified by match to protein family HMM PF02798 gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1214 AHA_1215 AHA_1215 malS malS 1323129 1325237 - periplasmic alpha-amylase periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB%3B hydrolyzes alpha-(1%2C4) glycosidic linkages%3B contains internal disulfide bonds gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1215 AHA_1216 AHA_1216 AHA_1216 1325445 1326608 - hypothetical protein gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1216 AHA_1217 AHA_1217 AHA_1217 1326608 1326979 - hypothetical protein identified by match to protein family HMM PF04138 gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1217 AHA_1218 AHA_1218 AHA_1218 1326976 1328037 - bactoprenol glucosyl transferase identified by match to protein family HMM PF00535 gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1218 AHA_1219 AHA_1219 AHA_1219 1328094 1328639 - hypothetical protein gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1219 AHA_1220 AHA_1220 AHA_1220 1328953 1329063 - hypothetical protein gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1220 AHA_1221 AHA_1221 AHA_1221 1329044 1329736 + amino acid ABC transporter substrate-binding protein gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1221 AHA_1222 AHA_1222 AHA_1222 1330001 1331302 + cell wall degradation protein identified by match to protein family HMM PF01471 gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1222 AHA_1223 AHA_1223 AHA_1223 1331453 1331998 + M15 family non-peptidase identified by match to protein family HMM PF02557%3B match to protein family HMM PF05951%3B match to protein family HMM TIGR01409 gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1223 AHA_1224 AHA_1224 AHA_1224 1332091 1332342 + hypothetical protein gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1224 AHA_1225 AHA_1225 AHA_1225 1332437 1333051 - hypothetical protein identified by match to protein family HMM PF03458 gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1225 AHA_1226 AHA_1226 cysZ cysZ 1333194 1333958 - protein CysZ identified by match to protein family HMM PF04401 gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1226 AHA_1227 AHA_1227 smc smc 1334068 1337442 + chromosome segregation protein SMC identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR02168 gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1227 AHA_1228 AHA_1228 zipA zipA 1337458 1338570 + cell division protein ZipA identified by similarity to SP:P77173%3B match to protein family HMM PF04354%3B match to protein family HMM TIGR02205 gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1228 AHA_1229 AHA_1229 ligA ligA 1338670 1340676 + NAD-dependent DNA ligase identified by match to protein family HMM PF00533%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575 gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1229 AHA_1230 AHA_1230 AHA_1230 1340750 1341727 - sugar ABC transporter ATPase gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1230 AHA_1231 AHA_1231 nrdD nrdD 1342170 1344287 + anaerobic ribonucleoside triphosphate reductase Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1231 AHA_1232 AHA_1232 nrdG nrdG 1344417 1344926 + anaerobic ribonucleotide reductase-activating protein activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1232 AHA_1233 AHA_1233 AHA_1233 1344964 1345161 + hypothetical protein identified by match to protein family HMM PF01679 gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1233 AHA_1234 AHA_1234 AHA_1234 1345306 1345698 + hypothetical protein gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1234 AHA_1235 AHA_1235 AHA_1235 1345730 1346089 - hypothetical protein gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1235 AHA_1236 AHA_1236 AHA_1236 1346217 1346978 - amino acid ABC transporter substrate-binding protein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1236 AHA_1237 AHA_1237 AHA_1237 1346055 1347104 + hypothetical protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1237 AHA_1238 AHA_1238 AHA_1238 1347120 1348148 - hypothetical protein gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1238 AHA_1239 AHA_1239 AHA_1239 1348159 1349214 - HlyD family secretion protein identified by match to protein family HMM PF00529 gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1239 AHA_1240 AHA_1240 AHA_1240 1349229 1349696 - MarR family transcriptional regulator identified by match to protein family HMM PF01047 gene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1240 AHA_1241 AHA_1241 AHA_1241 1350015 1350206 + hypothetical protein gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1241 AHA_1242 AHA_1242 AHA_1242 1350752 1352059 + sodium:citrate symporter identified by match to protein family HMM PF03390 gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1242 AHA_1243 AHA_1243 AHA_1243 1352071 1353621 + malate dehydrogenase malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1243 AHA_1244 AHA_1244 AHA_1244 1353639 1355207 + sensor kinase CitA identified by match to protein family HMM PF02518 gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1244 AHA_1245 AHA_1245 AHA_1245 1355211 1355903 + transcriptional regulatory protein DpiA identified by match to protein family HMM PF00072 gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1245 AHA_1246 AHA_1246 AHA_1246 1356001 1356900 - drug/metabolite exporter family protein identified by match to protein family HMM PF00892 gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1246 AHA_1247 AHA_1247 AHA_1247 1356997 1357803 + AraC family transcriptional regulator identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311%3B match to protein family HMM PF07883 gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1247 AHA_1248 AHA_1248 AHA_1248 1357867 1359429 - aldehyde dehydrogenase identified by match to protein family HMM PF00171 gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1248 AHA_1249 AHA_1249 AHA_1249 1359621 1361297 + acetoin catabolism regulatory protein identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954 gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1249 AHA_1250 AHA_1250 AHA_1250 1361384 1362559 + glutaryl-CoA dehydrogenase identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028 gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1250 AHA_1251 AHA_1251 AHA_1251 1362559 1363713 + caib/baif family protein identified by match to protein family HMM PF02515 gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1251 AHA_1252 AHA_1252 AHA_1252 1363753 1364250 + lactoylglutathione lyase identified by match to protein family HMM PF00903 gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1252 AHA_1253 AHA_1253 phoB phoB 1364353 1365042 + phosphate regulon transcriptional regulatory protein PhoB identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486%3B match to protein family HMM TIGR02154 gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1253 AHA_1254 AHA_1254 phoR phoR 1365051 1366346 + phosphate regulon sensor protein PhoR identified by similarity to SP:P08400%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR02966 gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1254 AHA_1255 AHA_1255 AHA_1255 1366723 1367697 + phosphate-binding protein identified by match to protein family HMM TIGR02136 gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1255 AHA_1256 AHA_1256 AHA_1256 1367861 1368667 + M48 family peptidase identified by match to protein family HMM PF01435 gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1256 AHA_1257 AHA_1257 AHA_1257 1368655 1369161 + N-acetyltransferase GCN5 identified by match to protein family HMM PF00583 gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1257 AHA_1258 AHA_1258 AHA_1258 1369271 1370173 + ROK family protein identified by match to protein family HMM PF00480 gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1258 AHA_1259 AHA_1259 AHA_1259 1370216 1370941 + copper homeostasis protein CutC identified by match to protein family HMM PF03932 gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1259 AHA_1260 AHA_1260 AHA_1260 1370950 1371069 + hypothetical protein gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1260 AHA_1261 AHA_1261 fklB fklB 1371255 1371866 + FKBP-type peptidyl-prolyl cis-trans isomerase FklB identified by match to protein family HMM PF00254%3B match to protein family HMM PF01346 gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1261 AHA_1262 AHA_1262 AHA_1262 1371996 1372877 + ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1262 AHA_1263 AHA_1263 AHA_1263 1372951 1373964 + ABC transporter permease identified by match to protein family HMM PF01061 gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1263 AHA_1264 AHA_1264 AHA_1264 1373961 1374275 + hypothetical protein identified by similarity to GB:AAN53512.1 gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1264 AHA_1265 AHA_1265 AHA_1265 1374332 1374694 - hypothetical protein gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1265 AHA_1266 AHA_1266 AHA_1266 1374736 1375239 + nudix hydrolase 3 identified by match to protein family HMM PF00293 gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1266 AHA_1267 AHA_1267 AHA_1267 1375303 1376229 - phenylacetate-CoA ligase gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1267 AHA_1268 AHA_1268 AHA_1268 1376356 1376829 + peroxiredoxin identified by match to protein family HMM PF00578 gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1268 AHA_1269 AHA_1269 AHA_1269 1376954 1377922 + K+-dependent Na+/Ca+ exchanger-like protein identified by match to protein family HMM PF01699%3B match to protein family HMM TIGR00367 gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1269 AHA_1270 AHA_1270 AHA_1270 1377992 1379143 - ornithine decarboxylase identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784 gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1270 AHA_1271 AHA_1271 agcS-1 agcS-1 1379859 1381235 + amino acid carrier protein identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835 gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1271 AHA_1272 AHA_1272 AHA_1272 1381345 1382046 - protein ligase identified by match to protein family HMM PF03099 gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1272 AHA_1273 AHA_1273 yicE yicE 1382146 1383543 - xanthine permease identified by similarity to GB:AAN82915.1%3B match to protein family HMM PF00860%3B match to protein family HMM TIGR00801 gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1273 AHA_1274 AHA_1274 AHA_1274 1383790 1384929 + response regulator PleD (Stalked cell differentiation-controllingprotein) identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1274 AHA_1275 AHA_1275 AHA_1275 1384964 1385212 - hypothetical protein gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1275 AHA_1276 AHA_1276 AHA_1276 1385363 1386742 - mate efflux family protein identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1276 AHA_1277 AHA_1277 AHA_1277 1386914 1387720 + AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1277 AHA_1278 AHA_1278 AHA_1278 1387789 1389483 + malate dehydrogenase malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1278 AHA_1279 AHA_1279 AHA_1279 1389624 1390679 - major outer membrane protein OmpAII identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389 gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1279 AHA_1280 AHA_1280 AHA_1280 1390891 1391892 - major outer membrane protein OmpAII identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389 gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1280 AHA_1281 AHA_1281 AHA_1281 1392324 1393358 - major outer membrane protein identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389 gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1281 AHA_1282 AHA_1282 AHA_1282 1393667 1394263 - hypothetical protein gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1282 AHA_1283 AHA_1283 AHA_1283 1394522 1394788 + transcriptional protein identified by match to protein family HMM PF01381 gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1283 AHA_1284 AHA_1284 AHA_1284 1394993 1396354 + sodium-dependent symporter family protein identified by match to protein family HMM PF00209 gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1284 AHA_1285 AHA_1285 AHA_1285 1396442 1397308 - alpha/beta hydrolase identified by match to protein family HMM PF01734 gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1285 AHA_1286 AHA_1286 AHA_1286 1397342 1398895 - sensor histidine kinase identified by match to protein family HMM PF00990%3B match to protein family HMM PF02743%3B match to protein family HMM TIGR00254 gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1286 AHA_1287 AHA_1287 AHA_1287 1399092 1400153 + HlyD family secretion protein identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1287 AHA_1288 AHA_1288 AHA_1288 1400153 1403272 + AcrB/AcrD/AcrF family protein identified by match to protein family HMM PF00873 gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1288 AHA_1289 AHA_1289 AHA_1289 1403366 1403734 + hypothetical protein gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1289 AHA_1290 AHA_1290 AHA_1290 1403872 1406280 + radical SAM protein identified by match to protein family HMM PF04055 gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1290 AHA_1291 AHA_1291 AHA_1291 1406570 1407529 - hypothetical protein gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1291 AHA_1292 AHA_1292 AHA_1292 1407548 1408483 - hypothetical protein gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1292 AHA_1293 AHA_1293 AHA_1293 1408883 1409230 + hypothetical protein gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1293 AHA_1294 AHA_1294 AHA_1294 1409232 1410272 - AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1294 AHA_1295 AHA_1295 AHA_1295 1410464 1410805 + inner membrane protein YhaI identified by match to protein family HMM PF05656 gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1295 AHA_1296 AHA_1296 AHA_1296 1410802 1411284 + hypothetical protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1296 AHA_1297 AHA_1297 AHA_1297 1411339 1411773 - hypothetical protein gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1297 AHA_1298 AHA_1298 AHA_1298 1411303 1411725 + hypothetical protein gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1298 AHA_1299 AHA_1299 AHA_1299 1411770 1412303 - DinB family protein identified by match to protein family HMM PF05163 gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1299 AHA_1300 AHA_1300 AHA_1300 1412491 1413399 + Gfo/Idh/MocA family oxidoreductase identified by match to protein family HMM PF01408 gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1300 AHA_1301 AHA_1301 ruvC ruvC 1413664 1414185 + Holliday junction resolvase endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1301 AHA_1302 AHA_1302 AHA_1302 1414508 1415194 + aquaporin Z porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1302 AHA_1303 AHA_1303 AHA_1303 1415318 1416061 - transglycosylase identified by match to protein family HMM PF01464 gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1303 AHA_1304 AHA_1304 AHA_1304 1416240 1417601 - alpha-amylase identified by similarity to SP:P22630%3B match to protein family HMM PF00128 gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1304 AHA_1305 AHA_1305 AHA_1305 1417832 1418995 - protease LasA identified by match to protein family HMM PF01551 gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1305 AHA_1306 AHA_1306 AHA_1306 1419424 1419903 + acetyltransferase identified by match to protein family HMM PF00583 gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1306 AHA_1307 AHA_1307 AHA_1307 1419908 1420516 - hypothetical protein identified by match to protein family HMM PF07273 gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1307 AHA_1308 AHA_1308 cls cls 1420548 1422029 + cardiolipin synthetase catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1308 AHA_1309 AHA_1309 AHA_1309 1422125 1423387 + lipoprotein gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1309 AHA_1310 AHA_1310 purU purU 1423457 1424293 - formyltetrahydrofolate deformylase produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis%3B has a role in one-carbon metabolism%3B forms a homohexamer%3B activated by methionine and inhibited by glycine gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1310 AHA_1311 AHA_1311 ribB ribB 1424752 1425405 + 3%2C4-dihydroxy-2-butanone 4-phosphate synthase DHBP synthase%3B functions during riboflavin biosynthesis gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1311 AHA_1312 AHA_1312 AHA_1312 1426013 1426861 - thioredoxin domain-containing protein identified by match to protein family HMM PF00085 gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1312 AHA_1313 AHA_1313 AHA_1313 1426858 1427580 - 4'-phosphopantetheinyl transferase identified by match to protein family HMM PF01648 gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1313 AHA_1314 AHA_1314 AHA_1314 1427844 1428344 + protein NlpC identified by match to protein family HMM PF00877 gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1314 AHA_1315 AHA_1315 AHA_1315 1428493 1429449 + SAM-dependent methyltransferase identified by match to protein family HMM PF05971 gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1315 AHA_1316 AHA_1316 AHA_1316 1429721 1430440 + nodulation protein N identified by match to protein family HMM PF01575 gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1316 AHA_1317 AHA_1317 AHA_1317 1430588 1431586 - hypothetical protein gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1317 AHA_1318 AHA_1318 AHA_1318 1431614 1432531 - LysM domain-containing protein identified by match to protein family HMM PF01476%3B match to protein family HMM PF03734 gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1318 AHA_1319 AHA_1319 AHA_1319 1432952 1433041 + tRNA-Ser tRNA gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1319 AHA_1320 AHA_1320 AHA_1320 1433179 1436307 - transporter AmrB identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1320 AHA_1321 AHA_1321 AHA_1321 1436323 1437678 - acriflavin resistance protein A identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1321 AHA_1322 AHA_1322 AHA_1322 1437636 1438364 + two-component response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1322 AHA_1323 AHA_1323 AHA_1323 1438361 1439419 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1323 AHA_1324 AHA_1324 AHA_1324 1439669 1439998 - quaternary ammonium compound-resistance protein QacE identified by match to protein family HMM PF00893 gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1324 AHA_1325 AHA_1325 AHA_1325 1440017 1440430 - quaternary ammonium compound-resistance protein QacE identified by match to protein family HMM PF00893 gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1325 AHA_1326 AHA_1326 AHA_1326 1440450 1441142 - hypothetical protein gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1326 AHA_1327 AHA_1327 AHA_1327 1441154 1441774 - propanediol utilization identified by match to protein family HMM PF06130 gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1327 AHA_1328 AHA_1328 AHA_1328 1441771 1442223 - hypothetical protein identified by match to protein family HMM PF00936 gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1328 AHA_1329 AHA_1329 AHA_1329 1442236 1443222 - benzylsuccinate synthase activating enzyme identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR02494 gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1329 AHA_1330 AHA_1330 AHA_1330 1443297 1445678 - pyruvate formate-lyase identified by similarity to SP:P32674%3B match to protein family HMM PF01228%3B match to protein family HMM PF02901 gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1330 AHA_1331 AHA_1331 AHA_1331 1446709 1447863 - alcohol dehydrogenase identified by match to protein family HMM PF00465 gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1331 AHA_1332 AHA_1332 AHA_1332 1447879 1448136 - ethanolamine utilization protein EutN/carboxysome structural protein Ccml identified by match to protein family HMM PF03319 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1332 AHA_1333 AHA_1333 eutE eutE 1448163 1449728 - acetaldehyde dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR02518 gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1333 AHA_1334 AHA_1334 AHA_1334 1449803 1450081 - ethanolamine utilization protein identified by match to protein family HMM PF00936 gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1334 AHA_1335 AHA_1335 AHA_1335 1450096 1450380 - microcompartments family protein identified by match to protein family HMM PF00936 gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1335 AHA_1336 AHA_1336 AHA_1336 1450397 1450675 - microcompartments family protein identified by match to protein family HMM PF00936 gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1336 AHA_1337 AHA_1337 AHA_1337 1451360 1451911 - hypothetical protein gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1337 AHA_1338 AHA_1338 AHA_1338 1451875 1452684 - transcriptional regulatory protein%2C C terminal identified by match to protein family HMM PF00486 gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1338 AHA_1339 AHA_1339 AHA_1339 1452706 1453311 - TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1339 AHA_1340 AHA_1340 AHA_1340 1453693 1454607 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1340 AHA_1341 AHA_1341 fdhD-1 fdhD-1 1454723 1455553 + formate dehydrogenase family accessory protein FdhD identified by match to protein family HMM PF02634%3B match to protein family HMM TIGR00129 gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1341 AHA_1342 AHA_1342 AHA_1342 1455540 1457828 + oxidoreductase alpha (molybdopterin) subunit identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR01701 gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1342 AHA_1343 AHA_1343 AHA_1343 1457945 1458020 - tRNA-Thr tRNA gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1343 AHA_1344 AHA_1344 AHA_1344 1458106 1458846 - hydrolase identified by match to protein family HMM PF02811 gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1344 AHA_1345 AHA_1345 AHA_1345 1459315 1459968 + PsrA protein identified by match to protein family HMM PF00440 gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1345 AHA_1346 AHA_1346 AHA_1346 1460017 1462341 + acyl-CoA dehydrogenase functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1346 AHA_1347 AHA_1347 AHA_1347 1462512 1465574 + AcrB/AcrD/AcrF family protein identified by match to protein family HMM PF00873 gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1347 AHA_1348 AHA_1348 AHA_1348 1465590 1466636 + RND family efflux transporter MFP subunit identified by match to protein family HMM TIGR01730 gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1348 AHA_1349 AHA_1349 pyk-2 pyk-2 1466702 1468141 - pyruvate kinase identified by match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064 gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1349 AHA_1350 AHA_1350 hexR hexR 1468305 1469168 - DNA-binding transcriptional regulator HexR Represses the expression of the zwf%2C eda%2C glp and gap gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1350 AHA_1351 AHA_1351 glk glk 1469509 1470477 + glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1351 AHA_1352 AHA_1352 AHA_1352 1470777 1472135 - sensor protein PhoQ identified by match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1352 AHA_1353 AHA_1353 AHA_1353 1472159 1472866 - transcriptional regulatory protein PhoP identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1353 AHA_1354 AHA_1354 AHA_1354 1472972 1475131 - RTX toxin transporter identified by similarity to GB:AAF94603.1%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR01846 gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1354 AHA_1355 AHA_1355 rtxD rtxD 1475134 1476498 - RTX toxin transporter identified by similarity to GB:AAD21060.1%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR01843 gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1355 AHA_1356 AHA_1356 rtxB rtxB 1476495 1478582 - RTX toxin transporter identified by similarity to GB:AAD21059.1%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR01846 gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1356 AHA_1357 AHA_1357 AHA_1357 1478891 1479289 + hypothetical protein gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1357 AHA_1358 AHA_1358 rtxC rtxC 1479322 1479771 + cytolysin-activating lysine-acyltransferase RtxC identified by similarity to SP:Q9X4W3%3B match to protein family HMM PF02794 gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1358 AHA_1359 AHA_1359 AHA_1359 1479789 1493846 + structural toxin protein RtxA identified by similarity to GB:AAD21057.1%3B match to protein family HMM PF02018 gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1359 AHA_1360 AHA_1360 AHA_1360 1494201 1494695 + acetyltransferase identified by match to protein family HMM PF00583 gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1360 AHA_1361 AHA_1361 rimO rimO 1494796 1496124 - ribosomal protein S12 methylthiotransferase catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1361 AHA_1362 AHA_1362 AHA_1362 1496176 1497486 + response regulator identified by match to protein family HMM PF01966 gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1362 AHA_1363 AHA_1363 AHA_1363 1497715 1498491 + hypothetical protein gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1363 AHA_1364 AHA_1364 fliE fliE 1498693 1499010 + flagellar hook-basal body complex protein FliE identified by match to protein family HMM PF02049%3B match to protein family HMM TIGR00205 gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1364 AHA_1365 AHA_1365 fliF fliF 1499098 1500780 + flagellar MS-ring protein the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1365 AHA_1366 AHA_1366 fliG fliG 1500773 1501834 + flagellar motor switch protein G One of three proteins involved in switching the direction of the flagellar rotation gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1366 AHA_1367 AHA_1367 fliH fliH 1501899 1502705 + flagellar assembly protein FliH identified by match to protein family HMM PF02108 gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1367 AHA_1368 AHA_1368 fliI fliI 1502778 1504109 + flagellum-specific ATP synthase involved in type III protein export during flagellum assembly gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1368 AHA_1369 AHA_1369 fliJ fliJ 1504136 1504576 + flagellar export protein FliJ identified by match to protein family HMM TIGR02473 gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1369 AHA_1370 AHA_1370 AHA_1370 1504806 1506689 + flagellar hook-length control protein FliK identified by similarity to GB:AAC33327.1%3B match to protein family HMM PF02120 gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1370 AHA_1371 AHA_1371 fliL fliL 1506747 1507265 + flagellar basal body-associated protein FliL interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1371 AHA_1372 AHA_1372 fliM fliM 1507275 1508345 + flagellar motor switch protein FliM with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1372 AHA_1373 AHA_1373 fliN fliN 1508397 1508789 + flagellar motor switch protein FliN identified by match to protein family HMM PF01052%3B match to protein family HMM TIGR02480 gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1373 AHA_1374 AHA_1374 fliO fliO 1508786 1509169 + flagellar biosynthesis protein%2C FliO identified by similarity to SP:Q51467%3B match to protein family HMM PF04347 gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1374 AHA_1375 AHA_1375 fliP fliP 1509156 1509935 + flagellar biosynthesis protein FliP FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1375 AHA_1376 AHA_1376 fliQ fliQ 1509963 1510232 + flagellar biosynthetic protein FliQ identified by similarity to SP:P34201%3B match to protein family HMM PF01313%3B match to protein family HMM TIGR01402 gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1376 AHA_1377 AHA_1377 fliR fliR 1510300 1511091 + flagellar biosynthesis protein FliR FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1377 AHA_1378 AHA_1378 flhB flhB 1511226 1512356 + flagellar biosynthetic protein FlhB identified by similarity to GB:AAN56214.1%3B match to protein family HMM PF01312%3B match to protein family HMM TIGR00328 gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1378 AHA_1379 AHA_1379 flhA flhA 1512464 1514566 + flagellar biosynthesis protein FlhA membrane protein involved in the flagellar export apparatus gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1379 AHA_1380 AHA_1380 flhF flhF 1514583 1516004 + flagellar biosynthesis protein FlhF identified by similarity to GB:AAN03365.1%3B match to protein family HMM PF00448 gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1380 AHA_1381 AHA_1381 AHA_1381 1516012 1516881 + CobQ/CobB/MinD/ParA family protein identified by similarity to GB:AAF32413.1%3B match to protein family HMM PF01656 gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1381 AHA_1382 AHA_1382 fliA fliA 1516874 1517593 + flagellar biosynthesis sigma factor sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1382 AHA_1383 AHA_1383 cheY cheY 1517705 1518088 + chemotaxis protein CheY identified by similarity to SP:Q51455%3B match to protein family HMM PF00072 gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1383 AHA_1384 AHA_1384 cheZ cheZ 1518101 1518841 + chemotaxis protein CheZ identified by similarity to SP:Q51434%3B match to protein family HMM PF04344 gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1384 AHA_1385 AHA_1385 cheA-2 cheA-2 1518853 1521039 + chemotaxis protein CheA identified by similarity to GB:AAC08064.1%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895 gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1385 AHA_1386 AHA_1386 cheB-2 cheB-2 1521072 1522187 + chemotaxis-specific methylesterase regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1386 AHA_1387 AHA_1387 motA motA 1522196 1522927 + chemotaxis protein MotA identified by similarity to SP:P28611%3B match to protein family HMM PF01618 gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1387 AHA_1388 AHA_1388 AHA_1388 1522930 1523856 + ompA family protein identified by match to protein family HMM PF00691 gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1388 AHA_1389 AHA_1389 AHA_1389 1523861 1524655 + CobQ/CobB/MinD/ParA family protein identified by match to protein family HMM PF01656 gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1389 AHA_1390 AHA_1390 AHA_1390 1524652 1525524 + chemotaxis protein CheW identified by match to protein family HMM PF01584 gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1390 AHA_1391 AHA_1391 cheW-2 cheW-2 1525594 1526082 + chemotaxis protein CheW identified by match to protein family HMM PF01584 gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1391 AHA_1392 AHA_1392 AHA_1392 1526101 1526487 + DNA repair ATPase gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1392 AHA_1393 AHA_1393 ccmA ccmA 1526642 1527277 + heme ABC exporter%2C ATP-binding protein CcmA identified by similarity to SP:P33931%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01189 gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1393 AHA_1394 AHA_1394 ccmB ccmB 1527283 1527951 + heme exporter protein CcmB identified by similarity to SP:P33930%3B match to protein family HMM PF03379%3B match to protein family HMM TIGR01190 gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1394 AHA_1395 AHA_1395 ccmC ccmC 1528115 1528855 + heme exporter protein C identified by similarity to SP:P33929%3B match to protein family HMM PF01578%3B match to protein family HMM TIGR01191 gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1395 AHA_1396 AHA_1396 AHA_1396 1528858 1529064 + hypothetical protein identified by match to protein family HMM PF04995 gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1396 AHA_1397 AHA_1397 ccmE ccmE 1529061 1529552 + cytochrome c-type biogenesis protein CcmE identified by match to protein family HMM PF03100 gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1397 AHA_1398 AHA_1398 ccmF-1 ccmF-1 1529635 1531590 + cytochrome c-type biogenesis protein CcmF identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR00353 gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1398 AHA_1399 AHA_1399 dsbE dsbE 1531587 1532117 + thiol:disulfide interchange protein DsbE identified by similarity to SP:P0AA86%3B match to protein family HMM TIGR00385 gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1399 AHA_1400 AHA_1400 AHA_1400 1532129 1532608 + cytochrome c-type biogenesis protein CcmH identified by match to protein family HMM PF03918 gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1400 AHA_1401 AHA_1401 AHA_1401 1532605 1533879 + cytochrome c-type biogenesis protein CcmH gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1401 AHA_1402 AHA_1402 vacJ vacJ 1533984 1534772 + lipoprotein VacJ identified by match to protein family HMM PF04333 gene gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1402 AHA_1403 AHA_1403 AHA_1403 1534899 1535483 - superoxide dismutase identified by match to protein family HMM PF00081%3B match to protein family HMM PF02777 gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1403 AHA_1404 AHA_1404 AHA_1404 1535770 1536114 + glutaredoxin-like protein identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR00365 gene gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1404 AHA_1405 AHA_1405 AHA_1405 1536192 1537505 - tRNA and rRNA cytosine-C5-methylase identified by match to protein family HMM PF01189 gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1405 AHA_1406 AHA_1406 AHA_1406 1537565 1539595 + hypothetical protein gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1406 AHA_1407 AHA_1407 AHA_1407 1539592 1539915 + hypothetical protein gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1407 AHA_1408 AHA_1408 pdxH pdxH 1540087 1540725 + pyridoxamine 5'-phosphate oxidase identified by similarity to SP:P28225%3B match to protein family HMM PF01243%3B match to protein family HMM TIGR00558 gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1408 AHA_1409 AHA_1409 AHA_1409 1540755 1541369 + glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1409 AHA_1410 AHA_1410 AHA_1410 1541369 1542988 + hypothetical protein gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1410 AHA_1411 AHA_1411 AHA_1411 1543021 1543542 + acetyltransferase identified by match to protein family HMM PF00583 gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1411 AHA_1412 AHA_1412 AHA_1412 1543602 1544732 - cupin superfamily protein identified by match to protein family HMM PF08007 gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1412 AHA_1413 AHA_1413 purB purB 1544898 1546268 - adenylosuccinate lyase Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1413 AHA_1414 AHA_1414 AHA_1414 1546396 1547010 - hypothetical protein HflD%3B UPF0274%3B in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein%3B in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1414 AHA_1415 AHA_1415 mnmA mnmA 1547223 1548329 - tRNA-specific 2-thiouridylase MnmA catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1415 AHA_1416 AHA_1416 AHA_1416 1548648 1549115 - 7%2C8-dihydro-8-oxoguanine-triphosphatase identified by match to protein family HMM PF00293 gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1416 AHA_1417 AHA_1417 AHA_1417 1549211 1550152 - ribosomal large subunit pseudouridine synthase E identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR00093 gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1417 AHA_1418 AHA_1418 AHA_1418 1550219 1550986 - fructose specific permease identified by match to protein family HMM PF00359 gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1418 AHA_1419 AHA_1419 AHA_1419 1550987 1551292 - phosphotransferase system enzyme II%2C fructose-specific identified by match to protein family HMM PF02379%3B match to protein family HMM TIGR00829 gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1419 AHA_1420 AHA_1420 uhpT uhpT 1551591 1552997 - sugar phosphate antiporter cytoplasmic membrane protein that functions as a monomer%3B catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1420 AHA_1421 AHA_1421 AHA_1421 1553411 1555318 - pts system%2C fructose-specific IIABC component identified by match to protein family HMM PF00359%3B match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR00848%3B match to protein family HMM TIGR01427 gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1421 AHA_1422 AHA_1422 AHA_1422 1557075 1557551 - IAA acetyltransferase identified by match to protein family HMM PF00583 gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1422 AHA_1423 AHA_1423 AHA_1423 1557605 1557880 - hypothetical protein gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1423 AHA_1424 AHA_1424 AHA_1424 1557976 1558440 - MerR family transcriptional regulator identified by match to protein family HMM PF00376 gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1424 AHA_1425 AHA_1425 AHA_1425 1558653 1559897 + FMN-binding oxidoreductase identified by match to protein family HMM PF00724 gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1425 AHA_1426 AHA_1426 malI-1 malI-1 1559923 1560960 - DNA-binding transcriptional repressor MalI regulates malXY which are involved in maltose-glucose transport gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1426 AHA_1427 AHA_1427 malX malX 1561236 1562822 + bifunctional PTS system maltose and glucose-specific transporter subunits IICB phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%3B catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane%3B component IIB catalyzes the phosphorylation of the sugar molecule%3B IIC forms the translocation channel and contains the substrate specific binding site gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1427 AHA_1428 AHA_1428 AHA_1428 1562896 1564098 + protein MalY identified by match to protein family HMM PF00155 gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1428 AHA_1429 AHA_1429 AHA_1429 1564126 1564785 - hypothetical protein gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1429 AHA_1430 AHA_1430 AHA_1430 1564945 1565289 - hypothetical protein gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1430 AHA_1431 AHA_1431 AHA_1431 1565433 1567817 - pts system%2C fructose-specific IIABC component identified by match to protein family HMM PF00359%3B match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR00848%3B match to protein family HMM TIGR01427 gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1431 AHA_1432 AHA_1432 AHA_1432 1568050 1568199 + hypothetical protein gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1432 AHA_1433 AHA_1433 AHA_1433 1568276 1568974 - hypothetical protein gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1433 AHA_1434 AHA_1434 manA manA 1569022 1570221 - mannose-6-phosphate isomerase identified by match to protein family HMM PF01238%3B match to protein family HMM TIGR00218 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1434 AHA_1435 AHA_1435 AHA_1435 1570336 1571226 + HTH-type transcriptional regulator YijO identified by match to protein family HMM PF00165 gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1435 AHA_1436 AHA_1436 icd icd 1571429 1572682 + isocitrate dehydrogenase Converts isocitrate to alpha ketoglutarate gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1436 AHA_1437 AHA_1437 AHA_1437 1572770 1572946 - hypothetical protein gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1437 AHA_1438 AHA_1438 dsdA dsdA 1573281 1574612 - D-serine dehydratase catalyzes the formation of pyruvate from serine gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1438 AHA_1439 AHA_1439 dsdC dsdC 1574911 1575870 + DNA-binding transcriptional regulator DsdC regulates the synthesis and expression of the dsdXA operon and dadA gene gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1439 AHA_1440 AHA_1440 AHA_1440 1575913 1576578 + hypothetical protein identified by similarity to GB:CAG37011.1 gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1440 AHA_1441 AHA_1441 AHA_1441 1576562 1577623 + hypothetical protein gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1441 AHA_1442 AHA_1442 ssrA ssrA 1577701 1578060 - gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1442 AHA_1443 AHA_1443 smpB smpB 1578180 1578668 - SsrA-binding protein binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1443 AHA_1444 AHA_1444 AHA_1444 1578838 1579272 + oligoketide cyclase/lipid transport protein identified by match to protein family HMM PF03364 gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1444 AHA_1445 AHA_1445 AHA_1445 1579265 1579612 + protein YfjF identified by match to protein family HMM PF03658 gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1445 AHA_1446 AHA_1446 AHA_1446 1579740 1580375 - nucleoside-diphosphate-sugar epimerase identified by match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1446 AHA_1447 AHA_1447 AHA_1447 1580500 1580838 - outer membrane lipoprotein OmlA identified by match to protein family HMM PF04355 gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1447 AHA_1448 AHA_1448 AHA_1448 1580959 1581678 - hypothetical protein identified by match to protein family HMM PF07603 gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1448 AHA_1449 AHA_1449 AHA_1449 1581680 1584766 - hypothetical protein gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1449 AHA_1450 AHA_1450 AHA_1450 1584989 1585192 + Flp/Fap pilin component superfamily protein identified by match to protein family HMM PF04964 gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1450 AHA_1451 AHA_1451 AHA_1451 1585189 1585605 + leader peptidase PilD identified by match to protein family HMM PF01478 gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1451 AHA_1452 AHA_1452 AHA_1452 1585615 1586505 + Flp pilus assembly protein CpaB identified by match to protein family HMM PF06981 gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1452 AHA_1453 AHA_1453 AHA_1453 1586525 1587922 + outer membrane secretin family protein identified by match to protein family HMM PF00263 gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1453 AHA_1454 AHA_1454 AHA_1454 1587934 1588482 + hypothetical protein gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1454 AHA_1455 AHA_1455 AHA_1455 1588486 1589619 + hypothetical protein gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1455 AHA_1456 AHA_1456 AHA_1456 1589619 1590932 + protein CpaF identified by match to protein family HMM PF00437 gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1456 AHA_1457 AHA_1457 AHA_1457 1590929 1591813 + Flp pilus assembly protein TadB identified by match to protein family HMM PF00482 gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1457 AHA_1458 AHA_1458 AHA_1458 1591817 1592701 + Flp pilus assembly protein TadC identified by match to protein family HMM PF00482 gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1458 AHA_1459 AHA_1459 AHA_1459 1592721 1593485 + Flp pilus assembly protein TadD gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1459 AHA_1460 AHA_1460 AHA_1460 1593482 1593955 + hypothetical protein identified by match to protein family HMM PF07811 gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1460 AHA_1461 AHA_1461 AHA_1461 1593952 1594458 + hypothetical protein gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1461 AHA_1462 AHA_1462 AHA_1462 1594459 1595841 + hypothetical protein gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1462 AHA_1463 AHA_1463 AHA_1463 1595906 1597057 - 1%2C3-propanediol dehydrogenase identified by match to protein family HMM PF00465 gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1463 AHA_1464 AHA_1464 udp udp 1597450 1598205 + uridine phosphorylase catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate%3B involved in the pyrimidine salvage pathway gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1464 AHA_1465 AHA_1465 AHA_1465 1598323 1599054 - ribosomal large subunit pseudouridine synthase A identified by match to protein family HMM PF00849 gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1465 AHA_1466 AHA_1466 rihA rihA 1599239 1600174 + ribonucleoside hydrolase 1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil%2C respectively%3B pyrimidine-specific gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1466 AHA_1467 AHA_1467 AHA_1467 1600209 1600679 + hypothetical protein gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1467 AHA_1468 AHA_1468 AHA_1468 1600816 1601112 - hypothetical protein gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1468 AHA_1469 AHA_1469 AHA_1469 1601141 1601710 - hypothetical protein identified by match to protein family HMM PF07509 gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1469 AHA_1470 AHA_1470 AHA_1470 1601850 1603472 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1470 AHA_1471 AHA_1471 AHA_1471 1603637 1604269 + amino acid transporter LysE identified by match to protein family HMM PF01810 gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1471 AHA_1472 AHA_1472 AHA_1472 1604519 1605307 + hypothetical protein identified by match to protein family HMM PF07313 gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1472 AHA_1473 AHA_1473 AHA_1473 1605429 1606637 - Na(+)/H(+) antiporter identified by match to protein family HMM PF00999 gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1473 AHA_1474 AHA_1474 AHA_1474 1606672 1607775 - hyaluronidase identified by match to protein family HMM PF07555 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1474 AHA_1475 AHA_1475 cvrA cvrA 1607818 1609545 - potassium/proton antiporter the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter%3B can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1475 AHA_1476 AHA_1476 AHA_1476 1609788 1609934 - hypothetical protein gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1476 AHA_1477 AHA_1477 AHA_1477 1609931 1610620 - D-alanyl-D-alanine carboxypeptidase identified by match to protein family HMM PF02557 gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1477 AHA_1478 AHA_1478 dapE dapE 1610617 1611744 - succinyl-diaminopimelate desuccinylase dapE-encoded N-succinyl-L%2CL-diaminopimelic acid desuccinylase (DapE)%2C catalyzes the hydrolysis of N-succinyl-L%2CLdiaminopimelate L%2CL-SDAP to L%2CL-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1478 AHA_1479 AHA_1479 AHA_1479 1611767 1612516 - arsenate reductase identified by match to protein family HMM PF03960%3B match to protein family HMM TIGR01617 gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1479 AHA_1480 AHA_1480 AHA_1480 1612312 1613223 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1480 AHA_1481 AHA_1481 AHA_1481 1613540 1613911 - hypothetical protein gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1481 AHA_1482 AHA_1482 AHA_1482 1614141 1615517 + anaerobic C4-dicarboxylate transporter identified by similarity to SP:P45428%3B match to protein family HMM PF03606%3B match to protein family HMM PF06808%3B match to protein family HMM TIGR00771 gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1482 AHA_1483 AHA_1483 AHA_1483 1615602 1616741 + carboxypeptidase G2 identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687 gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1483 AHA_1484 AHA_1484 AHA_1484 1616833 1617489 - hypothetical protein identified by match to protein family HMM PF01902 gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1484 AHA_1485 AHA_1485 dcuB dcuB 1617625 1618968 - anaerobic C4-dicarboxylate transporter functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to DcuA%3B DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate%2C malate%2C fumarate and succinate) transporters gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1485 AHA_1486 AHA_1486 asnC asnC 1619345 1620745 - asparaginyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1486 AHA_1487 AHA_1487 AHA_1487 1621286 1622119 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00672 gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1487 AHA_1488 AHA_1488 bioA bioA 1622255 1623718 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00508 gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1488 AHA_1489 AHA_1489 bioB bioB 1623721 1624809 + biotin synthase identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR00433 gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1489 AHA_1490 AHA_1490 bioF bioF 1624806 1626002 + 8-amino-7-oxononanoate synthase identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR00858 gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1490 AHA_1491 AHA_1491 bioC bioC 1625992 1626795 + biotin biosynthesis protein BioC identified by match to protein family HMM PF01209%3B match to protein family HMM TIGR02072 gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1491 AHA_1492 AHA_1492 bioD bioD 1626878 1627558 + dethiobiotin synthase identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR00347 gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1492 AHA_1493 AHA_1493 htpX htpX 1627671 1628543 + heat shock protein HtpX metalloprotease gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1493 AHA_1494 AHA_1494 AHA_1494 1628605 1630317 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015 gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1494 AHA_1495 AHA_1495 AHA_1495 1630540 1632528 - flavodoxin reductase family 1 protein identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970%3B match to protein family HMM PF03473%3B match to protein family HMM PF03476 gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1495 AHA_1496 AHA_1496 AHA_1496 1632745 1634391 + glutamate synthase (NADPH) small subunit unknown function gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1496 AHA_1497 AHA_1497 nifJ-1 nifJ-1 1634388 1637963 + pyruvate:ferredoxin (flavodoxin) oxidoreductase identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176 gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1497 AHA_1498 AHA_1498 AHA_1498 1639784 1639999 - hypothetical protein identified by match to protein family HMM PF04325 gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1498 AHA_1499 AHA_1499 AHA_1499 1640286 1640876 - hypothetical protein gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1499 AHA_1500 AHA_1500 AHA_1500 1640888 1642234 - Na+ driven multidrug efflux pump identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1500 AHA_1501 AHA_1501 AHA_1501 1642381 1644204 - sulfate permease identified by match to protein family HMM PF00916%3B match to protein family HMM PF01740 gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1501 AHA_1502 AHA_1502 AHA_1502 1644275 1644895 - hypothetical protein identified by match to protein family HMM PF06042 gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1502 AHA_1503 AHA_1503 AHA_1503 1644885 1645142 - hypothetical protein gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1503 AHA_1504 AHA_1504 cysM cysM 1645277 1646182 + cysteine synthase B catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1504 AHA_1505 AHA_1505 AHA_1505 1646348 1646629 + hypothetical protein gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1505 AHA_1506 AHA_1506 AHA_1506 1646663 1647847 - NAD-dependent methanol dehydrogenase identified by match to protein family HMM PF00465 gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1506 AHA_1507 AHA_1507 AHA_1507 1647865 1648380 - hypothetical protein gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1507 AHA_1508 AHA_1508 AHA_1508 1648361 1648963 - TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1508 AHA_1509 AHA_1509 AHA_1509 1648974 1650404 - coniferyl aldehyde dehydrogenase identified by match to protein family HMM PF00171 gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1509 AHA_1510 AHA_1510 AHA_1510 1650616 1650909 + hypothetical protein gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1510 AHA_1511 AHA_1511 AHA_1511 1650968 1651417 - protein NlpC identified by match to protein family HMM PF00877 gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1511 AHA_1512 AHA_1512 AHA_1512 1652272 1654137 + hemolysin identified by match to protein family HMM PF00652%3B match to protein family HMM PF07968 gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1512 AHA_1513 AHA_1513 AHA_1513 1654204 1655112 - hydrogen peroxide-inducible genes activator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1513 AHA_1514 AHA_1514 AHA_1514 1655259 1655861 + alkyl hydroperoxide reductase identified by match to protein family HMM PF00578 gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1514 AHA_1515 AHA_1515 AHA_1515 1655981 1656946 - alpha-L-glutamate ligase-like protein identified by match to protein family HMM TIGR02291 gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1515 AHA_1516 AHA_1516 AHA_1516 1656950 1658488 - gonadoliberin III-like protein gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1516 AHA_1517 AHA_1517 AHA_1517 1658492 1659208 - ATP-dependent Zn proteases identified by match to protein family HMM PF05618 gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1517 AHA_1518 AHA_1518 AHA_1518 1659333 1660364 - methyltransferase identified by match to protein family HMM PF08003%3B match to protein family HMM TIGR00452 gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1518 AHA_1519 AHA_1519 AHA_1519 1660307 1661056 - methyltransferase identified by match to protein family HMM TIGR00740 gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1519 AHA_1520 AHA_1520 AHA_1520 1661450 1662298 - hypothetical protein identified by match to protein family HMM PF01904 gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1520 AHA_1521 AHA_1521 aspS aspS 1662491 1664497 + aspartyl-tRNA synthetase catalyzes a two-step reaction%2C first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1521 AHA_1522 AHA_1522 AHA_1522 1664593 1665333 + hypothetical protein identified by match to protein family HMM PF01709%3B match to protein family HMM TIGR01033 gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1522 AHA_1523 AHA_1523 AHA_1523 1665616 1667232 + integral membrane protein identified by match to protein family HMM PF00884%3B match to protein family HMM PF08019 gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1523 AHA_1524 AHA_1524 nagC nagC 1667470 1668747 - N-acetylglucosamine repressor identified by similarity to SP:P15301%3B match to protein family HMM PF00480 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1524 AHA_1525 AHA_1525 nagA nagA 1668689 1669834 - N-acetylglucosamine-6-phosphate deacetylase catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1525 AHA_1526 AHA_1526 nagB nagB 1669844 1670644 - glucosamine-6-phosphate deaminase catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1526 AHA_1527 AHA_1527 nagE nagE 1670918 1672372 + pts system%2C N-acetylglucosamine-specific IIBC component identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR01998 gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1527 AHA_1528 AHA_1528 AHA_1528 1672495 1675158 + chitobiase identified by match to protein family HMM PF00728%3B match to protein family HMM PF03173%3B match to protein family HMM PF03174 gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1528 AHA_1529 AHA_1529 glnS glnS 1675508 1677169 + glutaminyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1529 AHA_1530 AHA_1530 fur fur 1677303 1677731 - ferric uptake regulation protein identified by similarity to SP:P0A9A9%3B match to protein family HMM PF01475 gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1530 AHA_1531 AHA_1531 AHA_1531 1677967 1678458 + hypothetical protein gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1531 AHA_1532 AHA_1532 AHA_1532 1678519 1679043 - flavodoxin identified by match to protein family HMM PF00258%3B match to protein family HMM TIGR01752 gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1532 AHA_1533 AHA_1533 AHA_1533 1679083 1679379 - LexA regulated protein gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1533 AHA_1534 AHA_1534 AHA_1534 1679400 1679621 - hypothetical protein gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1534 AHA_1535 AHA_1535 AHA_1535 1679677 1680447 - esterase YbfF identified by match to protein family HMM PF00561%3B match to protein family HMM PF07819 gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1535 AHA_1536 AHA_1536 AHA_1536 1680556 1681248 + SeqA protein identified by match to protein family HMM PF03925 gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1536 AHA_1537 AHA_1537 pgm pgm 1681306 1682955 + phosphoglucomutase catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1537 AHA_1538 AHA_1538 AHA_1538 1683040 1683921 - drug/metabolite exporter family transporter identified by match to protein family HMM PF00892 gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1538 AHA_1539 AHA_1539 AHA_1539 1684018 1684500 + MarR family transcriptional regulator identified by match to protein family HMM PF01047 gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1539 AHA_1540 AHA_1540 AHA_1540 1684525 1685235 - TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1540 AHA_1541 AHA_1541 AHA_1541 1685228 1685893 + AhpC/Tsa family protein identified by match to protein family HMM PF00578 gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1541 AHA_1542 AHA_1542 mltB-1 mltB-1 1685971 1687074 - murein hydrolase B membrane-bound lytic murein transglycosylase B%3B catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1542 AHA_1543 AHA_1543 AHA_1543 1687170 1687772 - phosphatidylglycerophosphate synthase identified by match to protein family HMM PF01066 gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1543 AHA_1544 AHA_1544 AHA_1544 1687787 1688425 - ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1544 AHA_1545 AHA_1545 AHA_1545 1688449 1690125 - inner membrane ABC transporter permease YnjC gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1545 AHA_1546 AHA_1546 AHA_1546 1690125 1691405 - ABC transporter substrate-binding protein gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1546 AHA_1547 AHA_1547 AHA_1547 1691315 1693483 - mercuric reductase%2C membrane-associated identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF01266%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1547 AHA_1548 AHA_1548 pcaC pcaC 1693483 1694064 - hypothetical protein identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778 gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1548 AHA_1549 AHA_1549 AHA_1549 1694076 1694750 - hypothetical protein gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1549 AHA_1550 AHA_1550 AHA_1550 1694802 1695362 + peptide methionine sulfoxide reductase MsrA identified by match to protein family HMM PF01625 gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1550 AHA_1551 AHA_1551 AHA_1551 1695377 1695655 - peptidyl-prolyl cis-trans isomerase C identified by match to protein family HMM PF00639 gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1551 AHA_1552 AHA_1552 AHA_1552 1695737 1696111 - hypothetical protein gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1552 AHA_1553 AHA_1553 AHA_1553 1696686 1698461 + OMP85 family outer membrane protein identified by match to protein family HMM PF01103 gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1553 AHA_1554 AHA_1554 AHA_1554 1698541 1702296 + hypothetical protein identified by match to protein family HMM PF04357 gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1554 AHA_1555 AHA_1555 AHA_1555 1702438 1702522 - tRNA-Tyr tRNA gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1555 AHA_1556 AHA_1556 AHA_1556 1702574 1702658 - tRNA-Tyr tRNA gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1556 AHA_1557 AHA_1557 AHA_1557 1702784 1703299 + hypothetical protein gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1557 AHA_1558 AHA_1558 yfiA-1 yfiA-1 1703381 1703719 - ribosomal subunit interface protein identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741 gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1558 AHA_1559 AHA_1559 AHA_1559 1704091 1706607 + protein MorA identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1559 AHA_1560 AHA_1560 slt slt 1706692 1708608 + soluble lytic murein transglycosylase identified by similarity to SP:P03810%3B match to protein family HMM PF01464 gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1560 AHA_1561 AHA_1561 AHA_1561 1708788 1709786 + HTH-type transcriptional regulator GalR identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1561 AHA_1562 AHA_1562 AHA_1562 1710045 1710857 + NAD dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01370 gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1562 AHA_1563 AHA_1563 AHA_1563 1710900 1711382 + acyl-CoA thioester hydrolase identified by match to protein family HMM PF03061 gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1563 AHA_1564 AHA_1564 AHA_1564 1711389 1711679 - hypothetical protein gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1564 AHA_1565 AHA_1565 AHA_1565 1711725 1712570 + endonuclease/exonuclease/phosphatase family protein identified by match to protein family HMM PF03372 gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1565 AHA_1566 AHA_1566 AHA_1566 1712657 1714204 - membrane-bound lytic murein transglycosylase D identified by match to protein family HMM PF01464%3B match to protein family HMM PF01476%3B match to protein family HMM PF06474 gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1566 AHA_1567 AHA_1567 AHA_1567 1714275 1715039 - hydroxyacylglutathione hydrolase identified by match to protein family HMM PF00753 gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1567 AHA_1568 AHA_1568 rnhA rnhA 1715821 1716285 - ribonuclease H An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1568 AHA_1569 AHA_1569 AHA_1569 1715099 1715833 + methyltransferase gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1569 AHA_1570 AHA_1570 dnaQ dnaQ 1716338 1717072 + DNA polymerase III subunit epsilon identified by match to protein family HMM PF00929%3B match to protein family HMM TIGR00573%3B match to protein family HMM TIGR01406 gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1570 AHA_1571 AHA_1571 AHA_1571 1717069 1718334 + hypothetical protein gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1571 AHA_1572 AHA_1572 AHA_1572 1718416 1719933 - HD domain-containing protein identified by match to protein family HMM PF01966 gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1572 AHA_1573 AHA_1573 fadE fadE 1720100 1722556 - acyl-CoA dehydrogenase functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1573 AHA_1574 AHA_1574 gmhA gmhA 1722801 1723379 + phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1574 AHA_1575 AHA_1575 AHA_1575 1723519 1724298 + class-II glutamine amidotransferase identified by match to protein family HMM PF00310 gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1575 AHA_1576 AHA_1576 AHA_1576 1724620 1724955 + Hpt domain-containing protein identified by match to protein family HMM PF01627 gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1576 AHA_1577 AHA_1577 AHA_1577 1725007 1725918 - hypothetical protein identified by match to protein family HMM PF01933%3B match to protein family HMM TIGR01826 gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1577 AHA_1578 AHA_1578 AHA_1578 1726032 1727216 + hypothetical protein gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1578 AHA_1579 AHA_1579 AHA_1579 1727358 1729331 + sensor protein LuxQ identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1579 AHA_1580 AHA_1580 AHA_1580 1729559 1730134 - ATP-dependent protease La identified by match to protein family HMM PF02190 gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1580 AHA_1581 AHA_1581 AHA_1581 1730239 1730877 - LuxR family DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196%3B match to protein family HMM PF04545 gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1581 AHA_1582 AHA_1582 narQ narQ 1730877 1732589 - nitrate/nitrite sensor protein NarQ identified by similarity to SP:P27896%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM PF07730 gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1582 AHA_1583 AHA_1583 moaA moaA 1732763 1733791 + molybdenum cofactor biosynthesis protein A together with moaC%2C is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1583 AHA_1584 AHA_1584 napF napF 1734041 1734550 + ferredoxin-type protein NapF identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00402 gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1584 AHA_1585 AHA_1585 napD napD 1734580 1734843 + NapD protein identified by match to protein family HMM PF03927 gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1585 AHA_1586 AHA_1586 napA napA 1734992 1737481 + nitrate reductase catalytic subunit periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1586 AHA_1587 AHA_1587 AHA_1587 1737498 1738232 + MauM/NapG ferredoxin-type protein identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00397 gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1587 AHA_1588 AHA_1588 AHA_1588 1738229 1739104 + ferredoxin-type protein NapH identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR02163 gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1588 AHA_1589 AHA_1589 napB napB 1739104 1739559 + periplasmic nitrate reductase%2C diheme cytochrome c subunit identified by match to protein family HMM PF03892 gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1589 AHA_1590 AHA_1590 AHA_1590 1739571 1740161 + cytochrome c-type protein NapC identified by match to protein family HMM PF03264%3B match to protein family HMM TIGR02161 gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1590 AHA_1591 AHA_1591 moaB moaB 1740424 1740930 + molybdenum cofactor biosynthesis protein B identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00177%3B match to protein family HMM TIGR02667 gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1591 AHA_1592 AHA_1592 moaC moaC 1740940 1741464 + molybdenum cofactor biosynthesis protein C identified by similarity to SP:P0A738%3B match to protein family HMM PF01967%3B match to protein family HMM TIGR00581 gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1592 AHA_1593 AHA_1593 moaD moaD 1741461 1741706 + molybdopterin synthase small subunit catalyzes the conversion of molybdopterin precursor Z into molybdopterin gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1593 AHA_1594 AHA_1594 moaE moaE 1741709 1742182 + molybdopterin converting factor subunit 2 identified by similarity to SP:P30749%3B match to protein family HMM PF02391 gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1594 AHA_1595 AHA_1595 modA modA 1742285 1743013 + molybdate ABC transporter periplasmic molybdate-binding protein identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256 gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1595 AHA_1596 AHA_1596 modB modB 1743237 1743917 + molybdate ABC transporter permease identified by similarity to SP:P37731%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR02141 gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1596 AHA_1597 AHA_1597 modC modC 1743914 1744990 + molybdate ABC transporter ATP-binding protein identified by similarity to SP:P37732%3B match to protein family HMM PF00005%3B match to protein family HMM PF03459%3B match to protein family HMM TIGR02142 gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1597 AHA_1598 AHA_1598 AHA_1598 1745073 1745831 + alpha/beta hydrolase identified by match to protein family HMM PF00561 gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1598 AHA_1599 AHA_1599 moeB moeB 1745917 1746672 - molybdopterin synthase sulfurylase MoeB identified by similarity to SP:P12282%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237%3B match to protein family HMM TIGR02355 gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1599 AHA_1600 AHA_1600 AHA_1600 1746669 1747895 - molybdopterin biosynthesis protein MoeA identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177 gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1600 AHA_1601 AHA_1601 folE folE 1748201 1748857 + GTP cyclohydrolase I involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1601 AHA_1602 AHA_1602 AHA_1602 1749269 1750924 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1602 AHA_1603 AHA_1603 AHA_1603 1751058 1751171 - hypothetical protein gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1603 AHA_1604 AHA_1604 fhs fhs 1751175 1752905 - formate--tetrahydrofolate ligase catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1604 AHA_1605 AHA_1605 AHA_1605 1752972 1753388 + hypothetical protein gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1605 AHA_1606 AHA_1606 AHA_1606 1753420 1754322 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1606 AHA_1607 AHA_1607 AHA_1607 1754433 1754993 + small protease identified by match to protein family HMM PF04264 gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1607 AHA_1608 AHA_1608 AHA_1608 1754993 1755730 + hypothetical protein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1608 AHA_1609 AHA_1609 AHA_1609 1755917 1757038 + S-adenosyl-L-homocysteine hydrolase NAD binding domain-containing protein identified by match to protein family HMM PF00670 gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1609 AHA_1610 AHA_1610 AHA_1610 1757076 1757387 + SelT/selW/selH domain-containing protein identified by match to protein family HMM PF05169%3B match to protein family HMM TIGR02174 gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1610 AHA_1611 AHA_1611 AHA_1611 1757450 1759174 - phosphate acyltransferase family protein identified by match to protein family HMM PF01553 gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1611 AHA_1612 AHA_1612 pepT pepT 1759317 1760540 - peptidase T catalyzes the release of the N-terminal amino acid from a tripeptide gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1612 AHA_1613 AHA_1613 speA speA 1761608 1763509 + arginine decarboxylase catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1613 AHA_1614 AHA_1614 AHA_1614 1763792 1763980 + hypothetical protein gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1614 AHA_1615 AHA_1615 AHA_1615 1764129 1764446 - hypothetical protein gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1615 AHA_1616 AHA_1616 AHA_1616 1764617 1766773 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1616 AHA_1617 AHA_1617 AHA_1617 1766813 1768171 - inner membrane transport protein YhaO gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1617 AHA_1618 AHA_1618 AHA_1618 1768357 1768740 + endoribonuclease L-PSP identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004 gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1618 AHA_1619 AHA_1619 AHA_1619 1768763 1770052 + hypothetical protein identified by match to protein family HMM PF06354 gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1619 AHA_1620 AHA_1620 AHA_1620 1770111 1770764 + MukF protein gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1620 AHA_1621 AHA_1621 AHA_1621 1770909 1771496 + fructose-2%3B6-bisphosphatase identified by match to protein family HMM PF00300 gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1621 AHA_1622 AHA_1622 AHA_1622 1771555 1772295 - 5-methylcytosine-specific restriction protein A identified by match to protein family HMM PF01844 gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1622 AHA_1623 AHA_1623 AHA_1623 1772489 1772956 + hypothetical protein gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1623 AHA_1624 AHA_1624 AHA_1624 1773110 1773478 + lactoylglutathione lyase family protein identified by match to protein family HMM PF00903 gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1624 AHA_1625 AHA_1625 AHA_1625 1773602 1775185 - hypothetical protein gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1625 AHA_1626 AHA_1626 AHA_1626 1775383 1776729 - glutamate dehydrogenase converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1626 AHA_1627 AHA_1627 AHA_1627 1777267 1777359 + hypothetical protein gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1627 AHA_1628 AHA_1628 AHA_1628 1777349 1778383 + 23S rRNA pseudouridine synthase F catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1628 AHA_1629 AHA_1629 AHA_1629 1778456 1779691 - cyanate transport protein CynX identified by match to protein family HMM PF07690 gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1629 AHA_1630 AHA_1630 AHA_1630 1779684 1780187 - cytidine/deoxycytidylate deaminase identified by match to protein family HMM PF00383 gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1630 AHA_1631 AHA_1631 AHA_1631 1780298 1781146 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1631 AHA_1632 AHA_1632 AHA_1632 1781169 1782368 - MFS family transporter identified by match to protein family HMM PF07690 gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1632 AHA_1633 AHA_1633 AHA_1633 1782480 1782947 - transcriptional regulatory protein identified by match to protein family HMM PF06445 gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1633 AHA_1634 AHA_1634 AHA_1634 1782988 1783143 - hypothetical protein gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1634 AHA_1635 AHA_1635 AHA_1635 1783225 1783695 - cytosolic long-chain acyl-CoA thioester hydrolase family protein identified by match to protein family HMM PF03061 gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1635 AHA_1636 AHA_1636 AHA_1636 1783716 1784027 - hypothetical protein gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1636 AHA_1637 AHA_1637 AHA_1637 1784170 1784829 + inner membrane protein YebE identified by match to protein family HMM PF04391 gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1637 AHA_1638 AHA_1638 AHA_1638 1784965 1785483 + acetyltransferase identified by match to protein family HMM PF00583 gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1638 AHA_1639 AHA_1639 AHA_1639 1785524 1786963 - GntR family transcriptional regulator identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392 gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1639 AHA_1640 AHA_1640 AHA_1640 1787084 1788655 + cytochrome D ubiquinol oxidase subunit I identified by match to protein family HMM PF01654 gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1640 AHA_1641 AHA_1641 cydB-1 cydB-1 1788655 1789782 + cytochrome D ubiquinol oxidase subunit II identified by match to protein family HMM PF02322%3B match to protein family HMM TIGR00203 gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1641 AHA_1642 AHA_1642 AHA_1642 1789810 1789923 + cyd operon protein YbgT identified by match to protein family HMM TIGR02106 gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1642 AHA_1643 AHA_1643 AHA_1643 1789986 1791158 - major facilitator transporter identified by match to protein family HMM PF07690 gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1643 AHA_1644 AHA_1644 dkgB dkgB 1791533 1792336 - 2%2C5-diketo-D-gluconate reductase B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1644 AHA_1645 AHA_1645 AHA_1645 1792384 1792680 - antibiotic biosynthesis monooxygenase family protein identified by match to protein family HMM PF03992 gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1645 AHA_1646 AHA_1646 AHA_1646 1792858 1793220 - glyoxalase/dioxygenase superfamily protein identified by match to protein family HMM PF00903 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1646 AHA_1647 AHA_1647 AHA_1647 1793800 1794702 + HTH-type transcriptional regulator YafC identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1647 AHA_1648 AHA_1648 glpK glpK 1794869 1796371 - glycerol kinase identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01311 gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1648 AHA_1649 AHA_1649 glpF glpF 1796426 1797274 - glycerol uptake facilitator protein identified by similarity to SP:P11244%3B match to protein family HMM PF00230%3B match to protein family HMM TIGR00861 gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1649 AHA_1650 AHA_1650 glpT glpT 1797762 1799117 + sn-glycerol-3-phosphate transporter catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1650 AHA_1651 AHA_1651 glpR glpR 1799219 1799977 + glycerol-3-phosphate regulon repressor identified by similarity to SP:P09392%3B match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1651 AHA_1652 AHA_1652 glpD glpD 1800299 1801786 + glycerol-3-phosphate dehydrogenase in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1652 AHA_1653 AHA_1653 glpQ glpQ 1801889 1802968 + glycerophosphodiester phosphodiesterase hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols%3B periplasmic gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1653 AHA_1654 AHA_1654 AHA_1654 1803287 1804360 + phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1654 AHA_1655 AHA_1655 tyrA tyrA 1804479 1805618 + bifunctional chorismate mutase/prephenate dehydrogenase catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1655 AHA_1656 AHA_1656 AHA_1656 1805691 1806566 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1656 AHA_1657 AHA_1657 AHA_1657 1806566 1807081 - hypothetical protein gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1657 AHA_1658 AHA_1658 AHA_1658 1807231 1807821 - ecotin identified by match to protein family HMM PF03974 gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1658 AHA_1659 AHA_1659 AHA_1659 1807945 1808502 - hypothetical protein identified by match to protein family HMM PF07603 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1659 AHA_1660 AHA_1660 AHA_1660 1808499 1809872 - hypothetical protein gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1660 AHA_1661 AHA_1661 AHA_1661 1809932 1812346 - proprotein convertase P-domain-containing protein identified by match to protein family HMM PF01483 gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1661 AHA_1662 AHA_1662 AHA_1662 1812379 1814457 - protease II identified by match to protein family HMM PF00326%3B match to protein family HMM PF02897 gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1662 AHA_1663 AHA_1663 AHA_1663 1814457 1816619 - hemin receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01785%3B match to protein family HMM TIGR01786 gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1663 AHA_1664 AHA_1664 AHA_1664 1816926 1818776 - sulfatase identified by match to protein family HMM PF00884 gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1664 AHA_1665 AHA_1665 AHA_1665 1818820 1819047 - hypothetical protein identified by match to protein family HMM PF07208 gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1665 AHA_1666 AHA_1666 AHA_1666 1819040 1820170 + nucleoid-associated protein NdpA identified by match to protein family HMM PF04245 gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1666 AHA_1667 AHA_1667 malE malE 1820566 1821747 + maltose ABC transporter periplasmic protein functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1667 AHA_1668 AHA_1668 malF malF 1821823 1823475 + maltose transporter membrane protein with MalKGE is involved in maltose transport into the cell gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1668 AHA_1669 AHA_1669 malG malG 1823488 1824378 + maltose transporter permease with MalKFE is involved in the transport of maltose into the cell gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1669 AHA_1670 AHA_1670 AHA_1670 1824448 1825584 + maltose/maltodextrin import ATP-binding protein MalK identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459 gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1670 AHA_1671 AHA_1671 AHA_1671 1825700 1826515 - polyphosphate kinase identified by match to protein family HMM PF03976 gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1671 AHA_1672 AHA_1672 AHA_1672 1826628 1827428 + alpha/beta hydrolase identified by match to protein family HMM PF00561 gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1672 AHA_1673 AHA_1673 mipA mipA 1827514 1828320 - MltA-interacting protein MipA identified by similarity to SP:P0A908%3B match to protein family HMM PF06629 gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1673 AHA_1674 AHA_1674 AHA_1674 1828356 1829426 - PerM family permease identified by match to protein family HMM PF01594 gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1674 AHA_1675 AHA_1675 AHA_1675 1829442 1829684 - hypothetical protein identified by match to protein family HMM PF01206 gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1675 AHA_1676 AHA_1676 AHA_1676 1829864 1831267 + zinc metalloprotease identified by match to protein family HMM PF01435 gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1676 AHA_1677 AHA_1677 AHA_1677 1831387 1831869 - thioredoxin gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1677 AHA_1678 AHA_1678 arsC-1 arsC-1 1831930 1832280 + arsenate reductase identified by match to protein family HMM PF03960%3B match to protein family HMM TIGR00014 gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1678 AHA_1679 AHA_1679 AHA_1679 1832277 1832672 + hypothetical protein gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1679 AHA_1680 AHA_1680 AHA_1680 1832963 1834033 + penicillin acylase identified by match to protein family HMM PF02275 gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1680 AHA_1681 AHA_1681 AHA_1681 1834070 1834690 - hypothetical protein identified by match to protein family HMM PF04336 gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1681 AHA_1682 AHA_1682 iadA iadA 1834867 1835997 + isoaspartyl dipeptidase identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR01975 gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1682 AHA_1683 AHA_1683 AHA_1683 1836108 1837010 - hypothetical protein identified by match to protein family HMM PF03956 gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1683 AHA_1684 AHA_1684 AHA_1684 1837544 1838314 + histidine ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1684 AHA_1685 AHA_1685 AHA_1685 1838380 1839153 + arginine and ornithine binding protein identified by match to protein family HMM PF00497 gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1685 AHA_1686 AHA_1686 AHA_1686 1839358 1840098 + histidine ABC transporter permease HisQ identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1686 AHA_1687 AHA_1687 AHA_1687 1840102 1840794 + histidine ABC transporter permease HisM identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1687 AHA_1688 AHA_1688 AHA_1688 1840846 1841487 - hypothetical protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1688 AHA_1689 AHA_1689 pflA pflA 1841574 1842392 - pyruvate formate lyase-activating enzyme 1 activates pyruvate formate-lyase 1 under anaerobic conditions gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1689 AHA_1690 AHA_1690 AHA_1690 1842458 1845436 - PAS/GGDEF domain-containing protein identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1690 AHA_1691 AHA_1691 AHA_1691 1845532 1847220 + NADH dehydrogenase identified by match to protein family HMM PF00070%3B match to protein family HMM PF00581%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992 gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1691 AHA_1692 AHA_1692 AHA_1692 1847308 1852275 + alpha-2-macroglobulin identified by match to protein family HMM PF01835%3B match to protein family HMM PF07703 gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1692 AHA_1693 AHA_1693 pbpC pbpC 1852286 1854685 + penicillin-binding protein 1C identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02073 gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1693 AHA_1694 AHA_1694 AHA_1694 1854787 1855590 - hypothetical protein gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1694 AHA_1695 AHA_1695 thiI thiI 1855925 1857373 + thiamine biosynthesis protein ThiI Required for the synthesis of the thiazole moiety gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1695 AHA_1696 AHA_1696 AHA_1696 1857452 1857988 - hypothetical protein gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1696 AHA_1697 AHA_1697 AHA_1697 1857946 1858578 - hypothetical protein identified by match to protein family HMM PF03458 gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1697 AHA_1698 AHA_1698 AHA_1698 1858995 1859903 + flagellin identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1698 AHA_1699 AHA_1699 AHA_1699 1860482 1861387 + flagellin identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1699 AHA_1700 AHA_1700 AHA_1700 1861426 1861866 + flagellin protein identified by match to protein family HMM PF03646 gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1700 AHA_1701 AHA_1701 fliD fliD 1861893 1863302 + flagellar hook-associated protein 2 identified by match to protein family HMM PF02465%3B match to protein family HMM PF07195%3B match to protein family HMM PF07196 gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1701 AHA_1702 AHA_1702 fliS fliS 1863328 1863750 + flagellar protein FliS identified by similarity to GB:AAT42123.1%3B match to protein family HMM PF02561%3B match to protein family HMM TIGR00208 gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1702 AHA_1703 AHA_1703 AHA_1703 1864132 1866141 + hypothetical protein gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1703 AHA_1704 AHA_1704 AHA_1704 1866230 1867051 - periplasmic binding protein identified by match to protein family HMM PF01497 gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1704 AHA_1705 AHA_1705 AHA_1705 1867044 1867913 - cobalamin biosynthesis protein CobD gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1705 AHA_1706 AHA_1706 mtnN-2 mtnN-2 1867991 1868683 - MTA/SAH nucleosidase identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704 gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1706 AHA_1707 AHA_1707 AHA_1707 1868791 1869549 - hypothetical protein gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1707 AHA_1708 AHA_1708 AHA_1708 1869639 1870571 - GufA protein identified by match to protein family HMM PF02535 gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1708 AHA_1709 AHA_1709 AHA_1709 1870808 1872580 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1709 AHA_1710 AHA_1710 AHA_1710 1873040 1873894 - inositol-1-monophosphatase identified by match to protein family HMM PF00459 gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1710 AHA_1711 AHA_1711 AHA_1711 1874045 1874500 + hypothetical protein gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1711 AHA_1712 AHA_1712 AHA_1712 1874693 1875355 + glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1712 AHA_1713 AHA_1713 emrD emrD 1875606 1876805 + multidrug resistance protein D multidrug efflux protein involved in adaptation to low energy shock gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1713 AHA_1714 AHA_1714 AHA_1714 1877170 1877544 - hypothetical protein identified by match to protein family HMM PF05164 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1714 AHA_1715 AHA_1715 AHA_1715 1877676 1878245 + hypothetical protein identified by match to protein family HMM PF03695%3B match to protein family HMM TIGR02292 gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1715 AHA_1716 AHA_1716 ubiH ubiH 1878429 1879646 + 2-polyprenyl-6-methoxyphenol 4-hydroxylase identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01984%3B match to protein family HMM TIGR01988 gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1716 AHA_1717 AHA_1717 AHA_1717 1879742 1880971 + 2-octaprenyl-6-methoxyphenol hydroxylase catalyzes the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone from 2-octaprenyl-6-methoxyphenol gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1717 AHA_1718 AHA_1718 gcvT gcvT 1881450 1882547 + glycine cleavage system aminomethyltransferase T catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1718 AHA_1719 AHA_1719 gcvH gcvH 1882653 1883042 + glycine cleavage system protein H part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1719 AHA_1720 AHA_1720 gcvP gcvP 1883295 1886171 + glycine dehydrogenase acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1720 AHA_1721 AHA_1721 AHA_1721 1886286 1887359 - hypothetical protein identified by match to protein family HMM PF03773 gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1721 AHA_1722 AHA_1722 AHA_1722 1887466 1887762 + ArsR family transcriptional regulator identified by match to protein family HMM PF01022 gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1722 AHA_1723 AHA_1723 AHA_1723 1887834 1888217 + arsenic operon regulator identified by match to protein family HMM PF01022 gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1723 AHA_1724 AHA_1724 AHA_1724 1888221 1888649 + arsenical resistance operon trans-acting repressor ArsD identified by match to protein family HMM PF06953 gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1724 AHA_1725 AHA_1725 AHA_1725 1888718 1890517 + arsenical pump-driving ATPase identified by match to protein family HMM PF02374%3B match to protein family HMM TIGR00345 gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1725 AHA_1726 AHA_1726 arsB arsB 1890616 1891650 + arsenical-resistance protein identified by match to protein family HMM PF01758%3B match to protein family HMM TIGR00832 gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1726 AHA_1727 AHA_1727 arsC-2 arsC-2 1891647 1892078 + arsenate reductase identified by similarity to SP:P37311%3B match to protein family HMM PF03960%3B match to protein family HMM TIGR00014 gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1727 AHA_1728 AHA_1728 AHA_1728 1892219 1892968 + methyltransferase gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1728 AHA_1729 AHA_1729 AHA_1729 1893079 1893387 - hypothetical protein gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1729 AHA_1730 AHA_1730 AHA_1730 1893491 1894783 + major facilitator family transporter identified by match to protein family HMM PF07690 gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1730 AHA_1731 AHA_1731 AHA_1731 1894849 1896429 - alkyl hydroperoxide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992 gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1731 AHA_1732 AHA_1732 AHA_1732 1896523 1897089 - alkyl hydroperoxide reductase identified by match to protein family HMM PF00578 gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1732 AHA_1733 AHA_1733 AHA_1733 1897750 1898196 - hypothetical protein identified by similarity to SP:P39066%3B match to protein family HMM PF00571 gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1733 AHA_1734 AHA_1734 queA queA 1898409 1899476 + S-adenosylmethionine--tRNA ribosyltransferase-isomerase Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1734 AHA_1735 AHA_1735 tgt tgt 1899547 1900683 + queuine tRNA-ribosyltransferase Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr) gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1735 AHA_1736 AHA_1736 yajC yajC 1900734 1901069 + preprotein translocase subunit YajC identified by match to protein family HMM PF02699%3B match to protein family HMM TIGR00739 gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1736 AHA_1737 AHA_1737 secD-1 secD-1 1901088 1902941 + protein-export membrane protein SecD identified by similarity to SP:P19673%3B match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129 gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1737 AHA_1738 AHA_1738 secF-1 secF-1 1902951 1903898 + protein-export membrane protein SecF identified by similarity to SP:P19674%3B match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966 gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1738 AHA_1739 AHA_1739 AHA_1739 1903998 1904366 + rhodanese domain-containing protein identified by match to protein family HMM PF00581 gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1739 AHA_1740 AHA_1740 AHA_1740 1904511 1905404 + lipoprotein NlpI lipoprotein that appears to be involved in cell division%3B interacts with the periplasmic protease Prc and may be activated by protease processing gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1740 AHA_1741 AHA_1741 AHA_1741 1905522 1906394 - collagenase identified by match to protein family HMM PF01136 gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1741 AHA_1742 AHA_1742 AHA_1742 1906407 1907402 - STM-proteaseA identified by match to protein family HMM PF01136 gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1742 AHA_1743 AHA_1743 AHA_1743 1908079 1908495 - hypothetical protein gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1743 AHA_1744 AHA_1744 AHA_1744 1907593 1908132 + sterol binding protein identified by match to protein family HMM PF02036 gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1744 AHA_1745 AHA_1745 AHA_1745 1908675 1909400 + RNA methyltransferase identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00050 gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1745 AHA_1746 AHA_1746 iscR iscR 1909494 1909997 + iron-sulfur cluster assembly transcription factor IscR identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738%3B match to protein family HMM TIGR02010 gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1746 AHA_1747 AHA_1747 iscS iscS 1910055 1911269 + cysteine desulfurase catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1747 AHA_1748 AHA_1748 iscU iscU 1911311 1911694 + scaffold protein identified by match to protein family HMM PF01592%3B match to protein family HMM TIGR01999 gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1748 AHA_1749 AHA_1749 iscA iscA 1911710 1912033 + iron-sulfur cluster assembly protein IscA identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049%3B match to protein family HMM TIGR02011 gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1749 AHA_1750 AHA_1750 hscB hscB 1912156 1912674 + Fe-S protein assembly co-chaperone HscB identified by similarity to SP:P0A6L9%3B match to protein family HMM PF00226%3B match to protein family HMM PF07743%3B match to protein family HMM TIGR00714 gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1750 AHA_1751 AHA_1751 hscA hscA 1912703 1914550 + chaperone protein HscA involved in the maturation of iron-sulfur cluster-containing proteins gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1751 AHA_1752 AHA_1752 fdx fdx 1914552 1914890 + ferredoxin%2C 2Fe-2S type%2C ISC system identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR02007 gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1752 AHA_1753 AHA_1753 pepB pepB 1915048 1916349 + aminopeptidase catalyzes the removal of an N-terminal amino acid from a peptide or arylamide gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1753 AHA_1754 AHA_1754 AHA_1754 1916453 1917736 + aminopeptidase catalyzes the removal of an N-terminal amino acid from a peptide or arylamide gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1754 AHA_1755 AHA_1755 ndk ndk 1918006 1918434 + nucleoside diphosphate kinase catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1755 AHA_1756 AHA_1756 AHA_1756 1918603 1919706 + ribosomal RNA large subunit methyltransferase N 23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1756 AHA_1757 AHA_1757 pilF pilF 1919719 1920510 + type IV pilus biogenesis/stability protein PilW identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM TIGR02521 gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1757 AHA_1758 AHA_1758 AHA_1758 1920500 1921438 + hypothetical protein identified by similarity to GB:AAZ26824.1 gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1758 AHA_1759 AHA_1759 ispG ispG 1921449 1922564 + 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612 gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1759 AHA_1760 AHA_1760 hisS hisS 1922703 1923980 + histidyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1760 AHA_1761 AHA_1761 AHA_1761 1923984 1924634 + hypothetical protein identified by match to protein family HMM PF07721 gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1761 AHA_1762 AHA_1762 AHA_1762 1924654 1925811 + PQQ repeat-containing protein identified by match to protein family HMM PF01011 gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1762 AHA_1763 AHA_1763 engA engA 1925886 1927385 + GTP-binding protein EngA EngA%3B essential Neisserial GTPase%3B synchronizes cellular events by interacting with multiple targets with tandem G-domains%3B overexpression in Escherichia coli suppresses rrmJ mutation%3B structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1763 AHA_1764 AHA_1764 AHA_1764 1927490 1927723 + ubiquitin ligase sinat5 identified by match to protein family HMM PF07191 gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1764 AHA_1765 AHA_1765 AHA_1765 1928082 1929572 - transglycosylase YfhD%3B uncharacterized member of the transglycosylase slt family%3B part of the rob operon%2C which plays a role in cellular resistance to antibiotics%2C bactericidal agents%2C and organic solvents%3B unknown function gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1765 AHA_1766 AHA_1766 purL purL 1929554 1933627 + phosphoribosylformylglycinamidine synthase catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1766 AHA_1767 AHA_1767 AHA_1767 1933689 1935215 - sensory box protein identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00229 gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1767 AHA_1768 AHA_1768 AHA_1768 1935231 1936664 - response regulator/sensory box/hdig domain-containing protein identified by match to protein family HMM PF00989%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00229 gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1768 AHA_1769 AHA_1769 AHA_1769 1936661 1937791 - hypothetical protein gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1769 AHA_1770 AHA_1770 AHA_1770 1937981 1939444 - NADH dehydrogenase subunit N Catalyzes the transfer of electrons from NADH to quinone gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1770 AHA_1771 AHA_1771 AHA_1771 1939506 1941026 - NADH dehydrogenase subunit M Catalyzes the transfer of electrons from NADH to quinone gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1771 AHA_1772 AHA_1772 AHA_1772 1941105 1942952 - NADH dehydrogenase subunit L Catalyzes the transfer of electrons from NADH to ubiquinone gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1772 AHA_1773 AHA_1773 AHA_1773 1942949 1943257 - NADH-quinone oxidoreductase chain k identified by match to protein family HMM PF00420 gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1773 AHA_1774 AHA_1774 AHA_1774 1943257 1943805 - NADH dehydrogenase subunit J Catalyzes the transfer of electrons from NADH to quinone gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1774 AHA_1775 AHA_1775 AHA_1775 1943816 1944358 - NADH dehydrogenase subunit I Catalyzes the transfer of electrons from NADH to quinone gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1775 AHA_1776 AHA_1776 AHA_1776 1944487 1945455 - NADH dehydrogenase subunit H Catalyzes the transfer of electrons from NADH to quinone gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1776 AHA_1777 AHA_1777 AHA_1777 1945452 1948181 - NADH dehydrogenase subunit G Catalyzes the transfer of electrons from NADH to quinone gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1777 AHA_1778 AHA_1778 nuoF nuoF 1948261 1949628 - NADH dehydrogenase I subunit F shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1778 AHA_1779 AHA_1779 AHA_1779 1949625 1950167 - NADH dehydrogenase subunit E Catalyzes the transfer of electrons from NADH to quinone gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1779 AHA_1780 AHA_1780 AHA_1780 1950229 1952034 - bifunctional NADH:ubiquinone oxidoreductase subunit C/D NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1780 AHA_1781 AHA_1781 AHA_1781 1952037 1952711 - NADH dehydrogenase subunit B The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1781 AHA_1782 AHA_1782 AHA_1782 1952741 1953145 - NADH dehydrogenase subunit A Catalyzes the transfer of electrons from NADH to quinone gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1782 AHA_1783 AHA_1783 motB motB 1953404 1954279 - flagellar motor protein MotB with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine%3B Vibrio parahaemolyticus protein is associated with the polar flagella gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1783 AHA_1784 AHA_1784 AHA_1784 1954257 1955015 - chemotaxis protein MotA identified by match to protein family HMM PF01618 gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1784 AHA_1785 AHA_1785 AHA_1785 1955468 1955555 - tRNA-Ser tRNA gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1785 AHA_1786 AHA_1786 AHA_1786 1955701 1956318 - hypothetical protein identified by match to protein family HMM PF04536 gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1786 AHA_1787 AHA_1787 AHA_1787 1956339 1957067 - hypothetical protein identified by match to protein family HMM PF04536 gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1787 AHA_1788 AHA_1788 AHA_1788 1957064 1957654 - LemA protein identified by match to protein family HMM PF04011 gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1788 AHA_1789 AHA_1789 mepA mepA 1957712 1958494 - penicillin-insensitive murein endopeptidase D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1789 AHA_1790 AHA_1790 AHA_1790 1958652 1959194 + hypothetical protein gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1790 AHA_1791 AHA_1791 AHA_1791 1959405 1959692 + RNA-binding protein identified by match to protein family HMM PF00076 gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1791 AHA_1792 AHA_1792 AHA_1792 1959764 1960663 - aldo/keto reductase identified by match to protein family HMM PF00248 gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1792 AHA_1793 AHA_1793 AHA_1793 1960779 1961186 + bacteriophage CI repressor protein identified by match to protein family HMM PF07022 gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1793 AHA_1794 AHA_1794 AHA_1794 1961268 1961969 + protein CsgA gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1794 AHA_1795 AHA_1795 AHA_1795 1962060 1963079 + L-allo-threonine aldolase identified by match to protein family HMM PF00155%3B match to protein family HMM PF01212 gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1795 AHA_1796 AHA_1796 AHA_1796 1963140 1963577 - diguanylate cyclase gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1796 AHA_1797 AHA_1797 AHA_1797 1963580 1964614 - response regulator identified by match to protein family HMM PF00072 gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1797 AHA_1798 AHA_1798 AHA_1798 1964669 1965607 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1798 AHA_1799 AHA_1799 AHA_1799 1965681 1966382 - hypothetical protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1799 AHA_1800 AHA_1800 AHA_1800 1966555 1968486 + PAS/GGDEF domain-containing protein identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1800 AHA_1801 AHA_1801 AHA_1801 1968575 1969300 + nitroreductase A NADPH-dependent%3B oxygen-insensitive%3B catalyzes the reduction of nitroaromatic compounds gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1801 AHA_1802 AHA_1802 AHA_1802 1969489 1970253 + DNA repair ATPase gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1802 AHA_1803 AHA_1803 AHA_1803 1970256 1970801 + hypothetical protein gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1803 AHA_1804 AHA_1804 AHA_1804 1970848 1972056 - major facilitator family transporter identified by match to protein family HMM PF07690 gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1804 AHA_1805 AHA_1805 AHA_1805 1972150 1973025 + transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1805 AHA_1806 AHA_1806 cysB cysB 1973099 1974073 + transcriptional regulator CysB LysR-type transcriptional regulator%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon%3B autoregulates expression%3B crystal structure of Klebsiella aerogenes showed tetramer formation gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1806 AHA_1807 AHA_1807 ribA ribA 1974152 1974745 - GTP cyclohydrolase II identified by similarity to SP:P0A7I7%3B match to protein family HMM PF00925%3B match to protein family HMM TIGR00505 gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1807 AHA_1808 AHA_1808 cmk cmk 1974995 1975687 + cytidylate kinase Catalyzes the formation of (d)CDP from ATP and (d)CMP gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1808 AHA_1809 AHA_1809 rpsA rpsA 1975781 1977451 + 30S ribosomal protein S1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1809 AHA_1810 AHA_1810 ihfB ihfB 1977547 1977831 + integration host factor subunit beta This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1810 AHA_1811 AHA_1811 AHA_1811 1977988 1978272 + hypothetical protein identified by match to protein family HMM PF06305 gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1811 AHA_1812 AHA_1812 AHA_1812 1978282 1979448 + tetratricopeptide repeat protein gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1812 AHA_1813 AHA_1813 pyrF pyrF 1979550 1980251 + orotidine 5'-phosphate decarboxylase type 1 subfamily%3B involved in last step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate to UMP and carbon dioxide%3B OMP decarboxylase%3B OMPDCase%3B OMPdecase gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1813 AHA_1814 AHA_1814 AHA_1814 1980299 1980856 - integral membrane protein gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1814 AHA_1815 AHA_1815 AHA_1815 1980807 1981493 + DTW domain-containing protein identified by match to protein family HMM PF03942 gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1815 AHA_1816 AHA_1816 exsB exsB 1981516 1982223 + exsB protein identified by match to protein family HMM PF06508%3B match to protein family HMM TIGR00364 gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1816 AHA_1817 AHA_1817 AHA_1817 1982243 1982956 + radical activating enzyme identified by match to protein family HMM PF04055 gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1817 AHA_1818 AHA_1818 AHA_1818 1982958 1983188 + hypothetical protein gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1818 AHA_1819 AHA_1819 AHA_1819 1983185 1983748 + ATP:cob(I)alamin adenosyltransferase identified by match to protein family HMM PF01923%3B match to protein family HMM TIGR00636 gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1819 AHA_1820 AHA_1820 AHA_1820 1983815 1984219 - DNA-binding protein StpA identified by match to protein family HMM PF00816 gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1820 AHA_1821 AHA_1821 AHA_1821 1984799 1986379 + Na(+)/H(+) antiporter family protein identified by match to protein family HMM PF03553 gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1821 AHA_1822 AHA_1822 tdk tdk 1986466 1987047 + thymidine kinase identified by match to protein family HMM PF00265 gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1822 AHA_1823 AHA_1823 AHA_1823 1987116 1988453 - hypothetical protein identified by match to protein family HMM PF08014%3B match to protein family HMM TIGR02421 gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1823 AHA_1824 AHA_1824 AHA_1824 1988606 1989067 + hypothetical protein gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1824 AHA_1825 AHA_1825 AHA_1825 1989214 1989301 + tRNA-Ser tRNA gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1825 AHA_1826 AHA_1826 AHA_1826 1990515 1991033 + hemolysin co-regulated protein identified by similarity to GB:CAA59143.1%3B match to protein family HMM PF05638 gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1826 AHA_1827 AHA_1827 AHA_1827 1991311 1993542 + VgrG protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646 gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1827 AHA_1828 AHA_1828 AHA_1828 1993544 1994863 + hypothetical protein gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1828 AHA_1829 AHA_1829 AHA_1829 1994873 1995862 + hypothetical protein identified by similarity to GB:AAN69637.1 gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1829 AHA_1830 AHA_1830 AHA_1830 1995977 1996522 + hypothetical protein gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1830 AHA_1831 AHA_1831 AHA_1831 1996643 1998031 + hypothetical protein identified by similarity to GB:CAH12461.1 gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1831 AHA_1832 AHA_1832 AHA_1832 1998704 1999207 + hypothetical protein identified by similarity to GB:CAG76344.1%3B match to protein family HMM PF05591 gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1832 AHA_1833 AHA_1833 AHA_1833 1999252 2000724 + hypothetical protein identified by similarity to GB:CAG76343.1%3B match to protein family HMM PF05943 gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1833 AHA_1834 AHA_1834 AHA_1834 2000731 2001162 + hypothetical protein identified by similarity to GB:CAG76342.1%3B match to protein family HMM PF07025 gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1834 AHA_1835 AHA_1835 AHA_1835 2001166 2002932 + hypothetical protein identified by similarity to GB:CAH22873.1%3B match to protein family HMM PF05947 gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1835 AHA_1836 AHA_1836 AHA_1836 2002896 2003894 + hypothetical protein identified by similarity to GB:CAG76340.1%3B match to protein family HMM PF06996 gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1836 AHA_1837 AHA_1837 AHA_1837 2003951 2005201 + hypothetical protein identified by similarity to GB:CAG76339.1 gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1837 AHA_1838 AHA_1838 AHA_1838 2005201 2005716 + lipoprotein gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1838 AHA_1839 AHA_1839 AHA_1839 2005719 2007053 + hypothetical protein identified by match to protein family HMM PF05936 gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1839 AHA_1840 AHA_1840 AHA_1840 2007145 2007855 + hypothetical protein identified by similarity to GB:AAF96029.1 gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1840 AHA_1841 AHA_1841 AHA_1841 2007876 2010518 + ClpA/ClpB family protein identified by match to protein family HMM PF00004%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728 gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1841 AHA_1842 AHA_1842 AHA_1842 2010521 2012059 + sigma-54 dependent transcriptional regulator identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1842 AHA_1843 AHA_1843 AHA_1843 2012059 2012664 + hypothetical protein identified by similarity to GB:AAS64093.1 gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1843 AHA_1844 AHA_1844 AHA_1844 2012673 2014109 + ImpA-related domain-containing protein identified by match to protein family HMM PF06812 gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1844 AHA_1845 AHA_1845 AHA_1845 2014151 2017636 + ImcF family protein identified by match to protein family HMM PF06744%3B match to protein family HMM PF06761 gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1845 AHA_1846 AHA_1846 AHA_1846 2017683 2019113 + ImpA domain-containing protein identified by match to protein family HMM PF06812 gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1846 AHA_1847 AHA_1847 AHA_1847 2019371 2019658 + PAAR motif-containing protein identified by match to protein family HMM PF05488 gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1847 AHA_1848 AHA_1848 AHA_1848 2019669 2021714 + Rhs element Vgr family protein identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646 gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1848 AHA_1849 AHA_1849 AHA_1849 2021749 2024304 + hypothetical protein gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1849 AHA_1850 AHA_1850 AHA_1850 2024307 2024711 + hypothetical protein identified by similarity to GB:AAO58637.1%3B match to protein family HMM PF07007 gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1850 AHA_1851 AHA_1851 AHA_1851 2026838 2026913 - tRNA-His tRNA gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1851 AHA_1852 AHA_1852 AHA_1852 2026963 2027039 - tRNA-Arg tRNA gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1852 AHA_1853 AHA_1853 AHA_1853 2027076 2027152 - tRNA-Pro tRNA gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1853 AHA_1854 AHA_1854 AHA_1854 2027356 2028219 + bifunctional 5%2C10-methylene-tetrahydrofolate dehydrogenase/ 5%2C10-methylene-tetrahydrofolate cyclohydrolase catalyzes the formation of 5%2C10-methenyltetrahydrofolate from 5%2C10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5%2C10-methenyltetrahydrofolate gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1854 AHA_1855 AHA_1855 cspD cspD 2028327 2028545 - cold shock domain-containing protein CspD identified by match to protein family HMM PF00313%3B match to protein family HMM TIGR02381 gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1855 AHA_1856 AHA_1856 clpS clpS 2028774 2029091 + ATP-dependent Clp protease adaptor protein ClpS involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation%3B binds to the N-terminal domain of the chaperone ClpA gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1856 AHA_1857 AHA_1857 clpA clpA 2029151 2031403 + ATP-dependent Clp protease%2C ATP-binding subunit ClpA identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02639 gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1857 AHA_1858 AHA_1858 infA infA 2031473 2031712 - translation initiation factor IF-1 stimulates the activities of the other two initiation factors%2C IF-2 and IF-3 gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1858 AHA_1859 AHA_1859 AHA_1859 2031761 2032477 - arginyl-tRNA-protein transferase Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1859 AHA_1860 AHA_1860 aat aat 2032474 2033181 - leucyl/phenylalanyl-tRNA--protein transferase leucyltransferase%3B phenylalanyltransferse%3B functions in the N-end rule pathway%3B transfers Leu%2C Phe%2C Met%2C from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1860 AHA_1861 AHA_1861 AHA_1861 2033201 2033671 + surface antigen identified by match to protein family HMM PF05433 gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1861 AHA_1862 AHA_1862 AHA_1862 2033782 2035029 - response regulator protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1862 AHA_1863 AHA_1863 trxB trxB 2035087 2036268 - thioredoxin-disulfide reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292 gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1863 AHA_1864 AHA_1864 lrp lrp 2036934 2037425 + leucine-responsive transcriptional regulator mediates a global response to leucine%3B acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1864 AHA_1865 AHA_1865 AHA_1865 2037627 2040149 + FtsK/SpoIIIE family protein identified by similarity to SP:P46889%3B match to protein family HMM PF01580 gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1865 AHA_1866 AHA_1866 lolA lolA 2040227 2040835 + outer membrane lipoprotein carrier protein LolA identified by match to protein family HMM PF03548%3B match to protein family HMM TIGR00547 gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1866 AHA_1867 AHA_1867 AHA_1867 2040959 2042314 + recombination factor protein RarA identified by match to protein family HMM PF00004 gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1867 AHA_1868 AHA_1868 serS serS 2042654 2043949 + seryl-tRNA synthetase catalyzes a two-step reaction%2C first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1868 AHA_1869 AHA_1869 cvpA cvpA 2044136 2044624 + CvpA family protein identified by match to protein family HMM PF02674 gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1869 AHA_1870 AHA_1870 purF purF 2044646 2046166 + amidophosphoribosyltransferase Catalyzes first step of the de novo purine nucleotide biosynthetic pathway gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1870 AHA_1871 AHA_1871 AHA_1871 2046352 2047110 + tRNA-(ms[2]io[6]A)-hydroxylase identified by match to protein family HMM PF06175 gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1871 AHA_1872 AHA_1872 sapF sapF 2047265 2048050 - peptide ABC transporter ATP-binding protein SapF identified by similarity to SP:P36638%3B match to protein family HMM PF00005 gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1872 AHA_1873 AHA_1873 sapD sapD 2048106 2049104 - peptide ABC transporter ATP-binding protein SapD identified by similarity to SP:P36636%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1873 AHA_1874 AHA_1874 sapC sapC 2049104 2049997 - peptide ABC transporter permease SapC identified by similarity to SP:P0A2J5%3B match to protein family HMM PF00528 gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1874 AHA_1875 AHA_1875 sapB sapB 2050033 2050992 - peptide ABC transporter permease SapB identified by similarity to SP:P0A2J3%3B match to protein family HMM PF00528 gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1875 AHA_1876 AHA_1876 sapA sapA 2050995 2052560 - peptide ABC transporter periplasmic peptide-binding protein SapA identified by similarity to SP:P36634%3B match to protein family HMM PF00496 gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1876 AHA_1877 AHA_1877 AHA_1877 2052681 2053715 - PSP operon transcriptional activator identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02974 gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1877 AHA_1878 AHA_1878 AHA_1878 2053911 2054591 + phage shock protein A identified by match to protein family HMM PF04012%3B match to protein family HMM TIGR02977 gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1878 AHA_1879 AHA_1879 pspB pspB 2054595 2054831 + phage shock protein B acts together with PspC to induce psp operon during infection with phage%2C exposure to ethanol or osmotic shock%3B forms a complex with PspA and C%3B PspC is required for PspAB binding gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1879 AHA_1880 AHA_1880 AHA_1880 2054860 2055342 + phage shock protein C identified by match to protein family HMM PF04024%3B match to protein family HMM TIGR02978 gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1880 AHA_1881 AHA_1881 AHA_1881 2055450 2056880 + amino acid regulated cytosolic protein identified by match to protein family HMM PF04317 gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1881 AHA_1882 AHA_1882 AHA_1882 2056947 2057972 + hypothetical protein identified by match to protein family HMM PF05128%3B match to protein family HMM TIGR01620 gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1882 AHA_1883 AHA_1883 phhA phhA 2058144 2058938 + phenylalanine 4-monooxygenase phenylalanine 4-hydroxylase%3B phenylalanine 4-hydroxylase%3B catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1883 AHA_1884 AHA_1884 phhB phhB 2058993 2059331 + pterin-4-alpha-carbinolamine dehydratase 4-alpha-hydroxytetrahydrobiopterin dehydratase activity%3B catalyzes the formation of (6R)-6-(L-erythro-1%2C2-dihydroxypropyl)-7%2C8-dihydro-6H-pterin from (6R)-6-(L-erythro-1%2C2-dihydroxypropyl)-5%2C6%2C7%2C8-tetrahydro-4a-hydroxypterin%3B functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1884 AHA_1885 AHA_1885 AHA_1885 2059351 2059452 + pterin-4-alpha-carbinolamine dehydratase gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1885 AHA_1886 AHA_1886 tyrR tyrR 2059587 2061134 + transcriptional regulatory protein TyrR identified by similarity to SP:P07604%3B match to protein family HMM PF00158%3B match to protein family HMM PF01842 gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1886 AHA_1887 AHA_1887 AHA_1887 2061312 2061881 + hypothetical protein gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1887 AHA_1888 AHA_1888 AHA_1888 2061878 2063146 + inner membrane protein YfiN identified by match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1888 AHA_1889 AHA_1889 AHA_1889 2063149 2063637 + OmpA family protein identified by match to protein family HMM PF00691 gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1889 AHA_1890 AHA_1890 AHA_1890 2063695 2064474 - TerC protein identified by match to protein family HMM PF03741 gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1890 AHA_1891 AHA_1891 AHA_1891 2064548 2065663 + ATP-NAD kinase identified by match to protein family HMM PF01513 gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1891 AHA_1892 AHA_1892 AHA_1892 2065774 2066052 + hypothetical protein gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1892 AHA_1893 AHA_1893 AHA_1893 2066150 2067814 + long-chain acyl-CoA synthetase identified by match to protein family HMM PF00501 gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1893 AHA_1894 AHA_1894 cdd cdd 2067899 2068780 - cytidine deaminase Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1894 AHA_1895 AHA_1895 AHA_1895 2068968 2069654 - LrgB family protein identified by match to protein family HMM PF04172 gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1895 AHA_1896 AHA_1896 AHA_1896 2069651 2070007 - LrgA family protein identified by match to protein family HMM PF03788 gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1896 AHA_1897 AHA_1897 AHA_1897 2070167 2071876 + alpha-galactosidase identified by match to protein family HMM PF02065 gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1897 AHA_1898 AHA_1898 AHA_1898 2071949 2072488 - hypothetical protein gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1898 AHA_1899 AHA_1899 AHA_1899 2072610 2074304 - exodeoxyribonuclease I identified by match to protein family HMM PF00929 gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1899 AHA_1900 AHA_1900 araA araA 2074271 2075770 - L-arabinose isomerase catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1900 AHA_1901 AHA_1901 araD araD 2075784 2076482 - L-ribulose-5-phosphate 4-epimerase catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1901 AHA_1902 AHA_1902 araB araB 2076479 2078170 - ribulokinase catalyzes the phosphorylation of ribulose to ribulose 5-phosphate gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1902 AHA_1903 AHA_1903 AHA_1903 2078532 2079515 + L-arabinose ABC transporter periplasmic L-arabinose-binding protein identified by match to protein family HMM PF00532 gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1903 AHA_1904 AHA_1904 araG araG 2079588 2081087 + L-arabinose transporter ATP-binding protein Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1904 AHA_1905 AHA_1905 araH araH 2081136 2082137 + L-arabinose transporter permease Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1905 AHA_1906 AHA_1906 araC araC 2082282 2083193 + DNA-binding transcriptional regulator AraC positive and negative regulator%3B regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1906 AHA_1907 AHA_1907 AHA_1907 2083288 2084022 - LysR family transcriptional regulator identified by match to protein family HMM PF03466 gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1907 AHA_1908 AHA_1908 AHA_1908 2084029 2084193 - LysR family transcriptional regulator identified by match to protein family HMM PF00126 gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1908 AHA_1909 AHA_1909 AHA_1909 2084317 2085183 + pirin identified by match to protein family HMM PF02678%3B match to protein family HMM PF05726 gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1909 AHA_1910 AHA_1910 rpmJ rpmJ 2085234 2085359 - 50S ribosomal protein L36 smallest protein in the large subunit%3B similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc%3B the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion%3B the proteins in this group do not have the motif gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1910 AHA_1911 AHA_1911 rpmE2 rpmE2 2085356 2085625 - 50S ribosomal protein L31 RpmE2%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster do not have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1911 AHA_1912 AHA_1912 AHA_1912 2085882 2086130 + DNA-damage-inducible protein I identified by match to protein family HMM PF06183 gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1912 AHA_1913 AHA_1913 AHA_1913 2086266 2087087 - hypothetical protein gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1913 AHA_1914 AHA_1914 AHA_1914 2087112 2087615 - hypothetical protein identified by match to protein family HMM PF01863 gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1914 AHA_1915 AHA_1915 AHA_1915 2087756 2089468 - hypothetical protein gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1915 AHA_1916 AHA_1916 AHA_1916 2089595 2091253 - 5'-nucleotidase identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1916 AHA_1917 AHA_1917 dcuC dcuC 2091384 2092736 - C4-dicarboxylate transporter DcuC responsible for the transport of C4-dicarboxylates during anaerobic growth gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1917 AHA_1918 AHA_1918 AHA_1918 2093102 2093671 + hypothetical protein gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1918 AHA_1919 AHA_1919 mnmC mnmC 2093754 2095751 - 5-methylaminomethyl-2-thiouridine methyltransferase catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1919 AHA_1920 AHA_1920 fabB fabB 2095863 2097074 + 3-oxoacyl-ACP synthase identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1920 AHA_1921 AHA_1921 AHA_1921 2097134 2097628 - acetyltransferase identified by match to protein family HMM PF00583 gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1921 AHA_1922 AHA_1922 gltA gltA 2098162 2099448 - type II citrate synthase type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1922 AHA_1923 AHA_1923 sdhC sdhC 2099873 2100262 + succinate dehydrogenase cytochrome b556 large membrane subunit identified by match to protein family HMM PF01127%3B match to protein family HMM TIGR02970 gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1923 AHA_1924 AHA_1924 AHA_1924 2100256 2100600 + succinate dehydrogenase hydrophobic membrane anchor protein identified by match to protein family HMM TIGR02968 gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1924 AHA_1925 AHA_1925 sdhA sdhA 2100602 2102368 + succinate dehydrogenase flavoprotein subunit part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1925 AHA_1926 AHA_1926 AHA_1926 2102385 2103101 + succinate dehydrogenase iron-sulfur protein identified by match to protein family HMM TIGR00384 gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1926 AHA_1927 AHA_1927 sucA sucA 2103158 2106034 + 2-oxoglutarate dehydrogenase E1 SucA%3B E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate%3B SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1927 AHA_1928 AHA_1928 sucB sucB 2106127 2107314 + 2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM TIGR01347 gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1928 AHA_1929 AHA_1929 sucC sucC 2107538 2108704 + succinyl-CoA synthetase subunit beta catalyzes the interconversion of succinyl-CoA and succinate gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1929 AHA_1930 AHA_1930 AHA_1930 2108704 2109576 + succinyl-CoA synthetase subunit alpha identified by match to protein family HMM PF00549%3B match to protein family HMM PF02629%3B match to protein family HMM TIGR01019 gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1930 AHA_1931 AHA_1931 AHA_1931 2110509 2111084 + hypothetical protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1931 AHA_1932 AHA_1932 AHA_1932 2111264 2111719 + hypothetical protein identified by similarity to SP:Q7MIW1%3B match to protein family HMM PF05779 gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1932 AHA_1933 AHA_1933 AHA_1933 2111863 2113269 - glycine/D-amino acid oxidase identified by match to protein family HMM PF01266 gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1933 AHA_1934 AHA_1934 AHA_1934 2113288 2115036 - ABC transporter permease identified by match to protein family HMM PF00528 gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1934 AHA_1935 AHA_1935 AHA_1935 2115033 2116127 - ferric cations import ATP-binding protein FbpC 2 identified by match to protein family HMM PF00005 gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1935 AHA_1936 AHA_1936 AHA_1936 2116400 2117419 - ABC transporter substrate-binding protein identified by match to protein family HMM PF01547 gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1936 AHA_1937 AHA_1937 AHA_1937 2117540 2118484 - 2-aminoethylphosphonate transport%2C repressor identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702 gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1937 AHA_1938 AHA_1938 phnW phnW 2118513 2119655 + 2-aminoethylphosphonate--pyruvate transaminase identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR02326 gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1938 AHA_1939 AHA_1939 AHA_1939 2119652 2121076 + 4-aminobutyrate aminotransferase catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1939 AHA_1940 AHA_1940 phnX phnX 2121069 2121908 + phosphonoacetaldehyde hydrolase catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1940 AHA_1941 AHA_1941 pflB pflB 2122032 2124353 - formate acetyltransferase identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901%3B match to protein family HMM TIGR01255 gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1941 AHA_1942 AHA_1942 AHA_1942 2124360 2125208 - formate transporter FocA identified by similarity to SP:P21501%3B match to protein family HMM PF01226%3B match to protein family HMM TIGR00790 gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1942 AHA_1943 AHA_1943 AHA_1943 2125589 2127349 - hypothetical protein identified by match to protein family HMM PF02624%3B match to protein family HMM TIGR00702 gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1943 AHA_1944 AHA_1944 AHA_1944 2127477 2127791 - SugE protein identified by match to protein family HMM PF00893 gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1944 AHA_1945 AHA_1945 asd-1 asd-1 2128131 2129246 + aspartate-semialdehyde dehydrogenase catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1945 AHA_1946 AHA_1946 AHA_1946 2129849 2132626 + M16B family peptidase identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1946 AHA_1947 AHA_1947 AHA_1947 2132723 2133886 - methionine gamma-lyase identified by match to protein family HMM PF01053 gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1947 AHA_1948 AHA_1948 AHA_1948 2133979 2135049 - 2OG-Fe(II) oxygenase identified by match to protein family HMM PF03171 gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1948 AHA_1949 AHA_1949 AHA_1949 2135510 2136148 - hypothetical protein identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370 gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1949 AHA_1950 AHA_1950 AHA_1950 2136250 2137155 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1950 AHA_1951 AHA_1951 AHA_1951 2137281 2138021 - acetoacetyl-CoA reductase catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1951 AHA_1952 AHA_1952 AHA_1952 2138205 2139182 + transcriptional activator identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445 gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1952 AHA_1953 AHA_1953 AHA_1953 2139436 2141580 + ferrichrome-iron receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783 gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1953 AHA_1954 AHA_1954 AHA_1954 2141619 2142425 + hypothetical protein gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1954 AHA_1955 AHA_1955 metR metR 2142470 2143390 - HTH-type transcriptional regulator MetR identified by similarity to SP:P0A9F9%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1955 AHA_1956 AHA_1956 metE metE 2143564 2145837 + 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1956 AHA_1957 AHA_1957 AHA_1957 2145925 2147046 - heptosyltransferase family protein identified by match to protein family HMM PF01075 gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1957 AHA_1958 AHA_1958 AHA_1958 2147332 2148459 + HPP family protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF04982 gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1958 AHA_1959 AHA_1959 AHA_1959 2148502 2150436 - amidohydrolase identified by match to protein family HMM PF07969 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1959 AHA_1960 AHA_1960 AHA_1960 2150636 2151295 + transcriptional regulator identified by match to protein family HMM PF00440 gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1960 AHA_1961 AHA_1961 AHA_1961 2151391 2152644 - D-amino acid dehydrogenase small subunit identified by match to protein family HMM PF01266 gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1961 AHA_1962 AHA_1962 AHA_1962 2152796 2154316 - cryptochrome/photolyase identified by match to protein family HMM PF04244 gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1962 AHA_1963 AHA_1963 tnaA tnaA 2154952 2156337 + tryptophanase tryptophan indole-lyase%3B catalyzes the formation of indole and pyruvate from tryptophan gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1963 AHA_1964 AHA_1964 AHA_1964 2156421 2157365 - periplasmic binding protein identified by match to protein family HMM PF01497 gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1964 AHA_1965 AHA_1965 AHA_1965 2157522 2158277 + phosphopantetheinyl transferase identified by similarity to GB:AAG28384.1%3B match to protein family HMM PF01648 gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1965 AHA_1966 AHA_1966 AHA_1966 2158339 2159142 - iron ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1966 AHA_1967 AHA_1967 AHA_1967 2159186 2160331 - iron ABC transporter permease identified by match to protein family HMM PF01032 gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1967 AHA_1968 AHA_1968 AHA_1968 2160267 2161283 - iron ABC transporter permease identified by match to protein family HMM PF01032 gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1968 AHA_1969 AHA_1969 AHA_1969 2161351 2163324 - TonB-dependent siderophore receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1969 AHA_1970 AHA_1970 AHA_1970 2163382 2164800 - multidrug transporter identified by similarity to GB:BAD13430.1%3B match to protein family HMM PF07690 gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1970 AHA_1971 AHA_1971 AHA_1971 2164862 2165614 + hypothetical protein gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1971 AHA_1972 AHA_1972 AHA_1972 2165675 2166169 - inner membrane protein YfeZ gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1972 AHA_1973 AHA_1973 corA corA 2166290 2167237 - magnesium and cobalt transport protein CorA identified by match to protein family HMM PF01544%3B match to protein family HMM TIGR00383 gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1973 AHA_1974 AHA_1974 AHA_1974 2167650 2167757 - electron transfer flavoprotein-ubiquinone oxidoreductase gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1974 AHA_1975 AHA_1975 AHA_1975 2167757 2169400 - electron transfer flavoprotein-ubiquinone oxidoreductase identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF05187 gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1975 AHA_1976 AHA_1976 AHA_1976 2169516 2170274 + electron transfer flavoprotein subunit beta identified by match to protein family HMM PF01012 gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1976 AHA_1977 AHA_1977 AHA_1977 2170375 2171301 + electron transfer flavoprotein subunit alpha identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012 gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1977 AHA_1978 AHA_1978 serC serC 2171525 2172613 + phosphoserine aminotransferase catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1978 AHA_1979 AHA_1979 aroA aroA 2172701 2174068 + 3-phosphoshikimate 1-carboxyvinyltransferase catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1979 AHA_1980 AHA_1980 AHA_1980 2174282 2175337 + phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1980 AHA_1981 AHA_1981 AHA_1981 2175425 2177035 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1981 AHA_1982 AHA_1982 AHA_1982 2177274 2178653 + coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1982 AHA_1983 AHA_1983 xseA xseA 2178725 2180089 - exodeoxyribonuclease VII large subunit identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237 gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1983 AHA_1984 AHA_1984 AHA_1984 2180197 2181126 - transporter identified by match to protein family HMM PF00892 gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1984 AHA_1985 AHA_1985 AHA_1985 2181265 2181684 - biopolymer transport exbD1 protein identified by match to protein family HMM PF02472 gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1985 AHA_1986 AHA_1986 AHA_1986 2181684 2182439 - MotA/TolQ/ExbB proton channel family protein identified by match to protein family HMM PF01618 gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1986 AHA_1987 AHA_1987 tonB-1 tonB-1 2182442 2183245 - outer membrane receptor-mediated transport energizer protein TonB identified by match to protein family HMM PF03544%3B match to protein family HMM TIGR01352 gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1987 AHA_1988 AHA_1988 AHA_1988 2183497 2185383 - potassium transporter identified by match to protein family HMM PF02705 gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1988 AHA_1989 AHA_1989 guaB guaB 2185831 2187294 + inosine-5'-monophosphate dehydrogenase identified by match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01302 gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1989 AHA_1990 AHA_1990 guaA guaA 2187378 2188967 + GMP synthase contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1990 AHA_1991 AHA_1991 AHA_1991 2189196 2189618 + hypothetical protein gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1991 AHA_1992 AHA_1992 AHA_1992 2190341 2191150 + hypothetical protein gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1992 AHA_1993 AHA_1993 AHA_1993 2191492 2192319 - ada regulatory protein identified by match to protein family HMM PF00165%3B match to protein family HMM PF01035%3B match to protein family HMM TIGR00589 gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1993 AHA_1994 AHA_1994 AHA_1994 2192371 2193282 - short chain dehydrogenase identified by match to protein family HMM PF00106 gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1994 AHA_1995 AHA_1995 AHA_1995 2193264 2194799 + hypothetical protein identified by match to protein family HMM PF00069%3B match to protein family HMM PF00560 gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1995 AHA_1996 AHA_1996 tpm tpm 2195015 2195668 + thiopurine S-methyltransferase identified by similarity to SP:O86262%3B match to protein family HMM PF05724 gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1996 AHA_1997 AHA_1997 AHA_1997 2195977 2198751 - peptidase insulinase family protein identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193 gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1997 AHA_1998 AHA_1998 sixA sixA 2198914 2199381 + phosphohistidine phosphatase SixA identified by similarity to SP:P76502%3B match to protein family HMM PF00300%3B match to protein family HMM TIGR00249 gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1998 AHA_1999 AHA_1999 AHA_1999 2199506 2199721 + hypothetical protein identified by match to protein family HMM PF06526 gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1999 AHA_2000 AHA_2000 AHA_2000 2199922 2200839 + drug/metabolite exporter family transporter identified by match to protein family HMM PF00892 gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2000 AHA_2001 AHA_2001 AHA_2001 2200889 2202505 - periplasmic murein peptide-binding protein identified by match to protein family HMM PF00496 gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2001 AHA_2002 AHA_2002 fbp fbp 2202890 2203924 + fructose-1%2C6-bisphosphatase catalyzes the formation of D-fructose 6-phosphate from fructose-1%2C6-bisphosphate gene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2002 AHA_2003 AHA_2003 mfd mfd 2204164 2207628 - transcription-repair coupling factor identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580 gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2003 AHA_2004 AHA_2004 AHA_2004 2207638 2208213 - hypothetical protein gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2004 AHA_2005 AHA_2005 lolC lolC 2208290 2209525 + lipoprotein-releasing system transmembrane protein LolC identified by similarity to SP:P75956%3B match to protein family HMM PF02687%3B match to protein family HMM TIGR02212 gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2005 AHA_2006 AHA_2006 lolD lolD 2209518 2210300 + lipoprotein releasing system%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02211 gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2006 AHA_2007 AHA_2007 lolE lolE 2210300 2211541 + lipoprotein releasing system%2C transmembrane protein LolE identified by similarity to SP:P75958%3B match to protein family HMM PF02687%3B match to protein family HMM TIGR02212 gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2007 AHA_2008 AHA_2008 AHA_2008 2211626 2212216 - 5'-nucleotidase identified by match to protein family HMM PF01966 gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2008 AHA_2009 AHA_2009 AHA_2009 2212290 2212724 - hypothetical protein identified by match to protein family HMM PF03733 gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2009 AHA_2010 AHA_2010 tig tig 2213153 2214463 + trigger factor Tig%3B RopA%3B peptidyl-prolyl cis/trans isomerase%3B promotes folding of newly synthesized proteins%3B binds ribosomal 50S subunit%3B forms a homodimer gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2010 AHA_2011 AHA_2011 clpP clpP 2214571 2215173 + ATP-dependent Clp protease proteolytic subunit hydrolyzes proteins to small peptides%3B with the ATPase subunits ClpA or ClpX%2C ClpP degrades specific substrates gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2011 AHA_2012 AHA_2012 clpX clpX 2215320 2216594 + ATP-dependent protease ATP-binding subunit ClpX binds and unfolds substrates as part of the ClpXP protease gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2012 AHA_2013 AHA_2013 lon lon 2216736 2219090 + ATP-dependent protease La identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763 gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2013 AHA_2014 AHA_2014 AHA_2014 2219331 2219603 + DNA-binding protein HU-beta identified by match to protein family HMM PF00216 gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2014 AHA_2015 AHA_2015 ppiD ppiD 2219758 2221668 + peptidylprolyl cis-trans isomerase D identified by similarity to SP:P77241%3B match to protein family HMM PF00639 gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2015 AHA_2016 AHA_2016 AHA_2016 2221894 2223486 - ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2016 AHA_2017 AHA_2017 AHA_2017 2223672 2224802 - phage integrase family protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00589 gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2017 AHA_2018 AHA_2018 AHA_2018 2224945 2225355 - hypothetical protein gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2018 AHA_2019 AHA_2019 AHA_2019 2225454 2225855 - hypothetical protein gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2019 AHA_2020 AHA_2020 AHA_2020 2226502 2227989 - hypothetical protein gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2020 AHA_2021 AHA_2021 AHA_2021 2228171 2228362 - hypothetical protein gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2021 AHA_2022 AHA_2022 AHA_2022 2229144 2229428 - DNA-binding protein identified by match to protein family HMM PF01381 gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2022 AHA_2023 AHA_2023 AHA_2023 2229994 2231145 - hypothetical protein identified by match to protein family HMM PF06114 gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2023 AHA_2024 AHA_2024 AHA_2024 2232078 2232257 - hypothetical protein gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2024 AHA_2025 AHA_2025 AHA_2025 2232485 2233090 - DNA-binding protein identified by match to protein family HMM PF01381 gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2025 AHA_2026 AHA_2026 AHA_2026 2233478 2233867 + hypothetical protein gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2026 AHA_2027 AHA_2027 AHA_2027 2234529 2235266 + hypothetical protein gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2027 AHA_2028 AHA_2028 AHA_2028 2235244 2235726 + hypothetical protein gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2028 AHA_2029 AHA_2029 AHA_2029 2236299 2236766 - hypothetical protein gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2029 AHA_2030 AHA_2030 AHA_2030 2237161 2237826 - hypothetical protein gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2030 AHA_2031 AHA_2031 AHA_2031 2237965 2238360 - hypothetical protein gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2031 AHA_2032 AHA_2032 AHA_2032 2238820 2239605 + hypothetical protein gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2032 AHA_2033 AHA_2033 AHA_2033 2239584 2240438 + hypothetical protein identified by similarity to GB:AAV82456.1 gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2033 AHA_2034 AHA_2034 AHA_2034 2241671 2241805 - hypothetical protein gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2034 AHA_2035 AHA_2035 AHA_2035 2242283 2243191 + RNA-dependent DNA polymerase identified by match to protein family HMM PF00078 gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2035 AHA_2036 AHA_2036 AHA_2036 2243181 2244851 + RecF/RecN/SMC family protein identified by match to protein family HMM PF02463 gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2036 AHA_2037 AHA_2037 AHA_2037 2244835 2245503 + hypothetical protein identified by match to protein family HMM TIGR02646 gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2037 AHA_2038 AHA_2038 AHA_2038 2245549 2246283 + Rha family phage regulatory protein identified by match to protein family HMM TIGR02681 gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2038 AHA_2039 AHA_2039 AHA_2039 2246290 2246730 + NinB protein identified by match to protein family HMM PF05772 gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2039 AHA_2040 AHA_2040 AHA_2040 2246727 2247044 + hypothetical protein gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2040 AHA_2041 AHA_2041 AHA_2041 2247041 2247463 + hypothetical protein gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2041 AHA_2042 AHA_2042 AHA_2042 2247460 2248161 + hypothetical protein identified by match to protein family HMM TIGR02642 gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2042 AHA_2043 AHA_2043 AHA_2043 2248208 2248891 - hypothetical protein gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2043 AHA_2044 AHA_2044 umuC umuC 2248997 2250271 - protein UmuC identified by similarity to SP:P04152%3B match to protein family HMM PF00817 gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2044 AHA_2045 AHA_2045 umuD umuD 2250275 2250697 - umuD protein identified by match to protein family HMM PF00717 gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2045 AHA_2046 AHA_2046 AHA_2046 2250885 2251949 + hypothetical protein gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2046 AHA_2047 AHA_2047 AHA_2047 2252032 2252442 + DNA-binding protein Hns identified by match to protein family HMM PF00816 gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2047 AHA_2048 AHA_2048 AHA_2048 2252526 2252999 + hypothetical protein gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2048 AHA_2049 AHA_2049 AHA_2049 2253020 2253631 + hypothetical protein gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2049 AHA_2050 AHA_2050 AHA_2050 2253952 2254443 + phage lysozyme identified by match to protein family HMM PF00959 gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2050 AHA_2051 AHA_2051 AHA_2051 2254488 2254838 - hypothetical protein gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2051 AHA_2052 AHA_2052 AHA_2052 2254269 2254940 + hypothetical protein gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2052 AHA_2053 AHA_2053 AHA_2053 2255023 2255919 + small subunit bacteriophage terminase gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2053 AHA_2054 AHA_2054 AHA_2054 2255959 2256705 + hypothetical protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2054 AHA_2055 AHA_2055 AHA_2055 2256773 2257837 + large subunit terminase gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2055 AHA_2056 AHA_2056 actP actP 2260336 2261991 - acetate permease member of the sodium:solute symporter family%3B cotranscribed with the acs gene which encodes acetyl coenzyme A synthase%3B mutations affect acetate uptake gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2056 AHA_2057 AHA_2057 AHA_2057 2261988 2262299 - hypothetical protein identified by match to protein family HMM PF04341 gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2057 AHA_2058 AHA_2058 AHA_2058 2262409 2263035 - DNA polymerase III subunit epsilon 3'-5' exonuclease of DNA polymerase III gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2058 AHA_2059 AHA_2059 AHA_2059 2263038 2264825 - cyclic nucleotide binding protein/CBS domain-containing proteins identified by match to protein family HMM PF00027%3B match to protein family HMM PF00571%3B match to protein family HMM PF03445 gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2059 AHA_2060 AHA_2060 AHA_2060 2265002 2265808 + enoyl-CoA hydratase/isomerase family protein identified by match to protein family HMM PF00378 gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2060 AHA_2061 AHA_2061 AHA_2061 2266221 2266472 + phage transcriptional activator%2C Ogr/Delta identified by match to protein family HMM PF04606 gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2061 AHA_2062 AHA_2062 AHA_2062 2266720 2267709 - hypothetical protein gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2062 AHA_2063 AHA_2063 AHA_2063 2267696 2270161 - hypothetical protein gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2063 AHA_2064 AHA_2064 AHA_2064 2270253 2270723 - hypothetical protein gene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2064 AHA_2065 AHA_2065 AHA_2065 2270973 2271560 - hypothetical protein gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2065 AHA_2066 AHA_2066 AHA_2066 2271560 2271940 - hypothetical protein identified by match to protein family HMM PF05840 gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2066 AHA_2067 AHA_2067 AHA_2067 2272025 2273524 - sodium:alanine symporter family protein identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835 gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2067 AHA_2068 AHA_2068 AHA_2068 2273674 2274276 + protein PhnO identified by match to protein family HMM PF00583 gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2068 AHA_2069 AHA_2069 AHA_2069 2274295 2275104 + hypothetical protein identified by match to protein family HMM PF06167 gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2069 AHA_2070 AHA_2070 AHA_2070 2275187 2275783 - GPR1/FUN34/yaaH family membrane protein identified by match to protein family HMM PF01184 gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2070 AHA_2071 AHA_2071 AHA_2071 2276469 2279369 - hypothetical protein identified by match to protein family HMM PF05359 gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2071 AHA_2072 AHA_2072 AHA_2072 2279418 2280179 - periplasmic binding protein gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2072 AHA_2073 AHA_2073 AHA_2073 2280217 2280639 - MerR family transcriptional regulator identified by match to protein family HMM PF00376 gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2073 AHA_2074 AHA_2074 AHA_2074 2280651 2281607 - hydroxymethylglutaryl-CoA lyase identified by match to protein family HMM PF00682 gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2074 AHA_2075 AHA_2075 AHA_2075 2281604 2283568 - methylcrotonoyl-CoA carboxylase subunit alpha identified by match to protein family HMM PF00289%3B match to protein family HMM PF00364%3B match to protein family HMM PF01071%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786 gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2075 AHA_2076 AHA_2076 AHA_2076 2283678 2284517 - enoyl-CoA hydratase/isomerase family protein identified by match to protein family HMM PF00378 gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2076 AHA_2077 AHA_2077 AHA_2077 2284527 2286128 - methylcrotonoyl-CoA carboxylase subunit beta identified by match to protein family HMM PF01039 gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2077 AHA_2078 AHA_2078 AHA_2078 2286125 2287273 - isovaleryl-CoA dehydrogenase 2 identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028 gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2078 AHA_2079 AHA_2079 mmsA-2 mmsA-2 2287520 2289031 + methylmalonate-semialdehyde dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01722 gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2079 AHA_2080 AHA_2080 AHA_2080 2289031 2290254 + acyl-CoA dehydrogenase identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028 gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2080 AHA_2081 AHA_2081 AHA_2081 2290395 2291207 + enoyl-CoA hydratase Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2081 AHA_2082 AHA_2082 AHA_2082 2291267 2292370 + enoyl-CoA hydratase/isomerase family protein identified by match to protein family HMM PF00378 gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2082 AHA_2083 AHA_2083 mmsB mmsB 2292398 2293318 + 3-hydroxyisobutyrate dehydrogenase identified by match to protein family HMM PF03446%3B match to protein family HMM TIGR01692 gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2083 AHA_2084 AHA_2084 fabG fabG 2293390 2294151 + 3-ketoacyl-ACP reductase Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2084 AHA_2085 AHA_2085 AHA_2085 2294541 2295977 + arginine/ornithine antiporter identified by match to protein family HMM PF00324%3B match to protein family HMM PF03845%3B match to protein family HMM TIGR00905 gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2085 AHA_2086 AHA_2086 AHA_2086 2296068 2296856 + hypothetical protein identified by match to protein family HMM PF01925 gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2086 AHA_2087 AHA_2087 AHA_2087 2297699 2298637 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2087 AHA_2088 AHA_2088 AHA_2088 2299168 2299698 + EAL domain-containing protein gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2088 AHA_2089 AHA_2089 AHA_2089 2299629 2301302 + cyclic diguanylate phosphodiesterase domain-containing protein identified by match to protein family HMM PF00563 gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2089 AHA_2090 AHA_2090 AHA_2090 2301307 2302182 - transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2090 AHA_2091 AHA_2091 AHA_2091 2302339 2303772 + beta-glucosidase identified by match to protein family HMM PF00232 gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2091 AHA_2092 AHA_2092 AHA_2092 2303883 2305706 - diguanylate cyclase identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2092 AHA_2093 AHA_2093 AHA_2093 2305808 2306293 - oxidoreductase molybdopterin binding subunit identified by match to protein family HMM PF00174 gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2093 AHA_2094 AHA_2094 AHA_2094 2306540 2307886 + HD domain-containing protein identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277 gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2094 AHA_2095 AHA_2095 AHA_2095 2307932 2308687 - reductase identified by match to protein family HMM PF00106 gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2095 AHA_2096 AHA_2096 AHA_2096 2308814 2309767 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2096 AHA_2097 AHA_2097 AHA_2097 2309932 2310777 + endonuclease IV Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2097 AHA_2098 AHA_2098 AHA_2098 2310811 2311800 + oxidoreductase%2C NAD-binding identified by match to protein family HMM PF01408 gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2098 AHA_2099 AHA_2099 AHA_2099 2311915 2312823 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2099 AHA_2100 AHA_2100 AHA_2100 2312923 2313906 + tellurite resistance protein identified by match to protein family HMM PF03595 gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2100 AHA_2101 AHA_2101 msbB msbB 2314174 2315163 + lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase identified by match to protein family HMM PF03279%3B match to protein family HMM TIGR02208 gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2101 AHA_2102 AHA_2102 AHA_2102 2315332 2316330 + lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase identified by match to protein family HMM PF03279 gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2102 AHA_2103 AHA_2103 AHA_2103 2316472 2317332 + RIO1 protein identified by match to protein family HMM PF01163 gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2103 AHA_2104 AHA_2104 AHA_2104 2317384 2317941 - acetyltransferase identified by match to protein family HMM PF00583 gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2104 AHA_2105 AHA_2105 AHA_2105 2317917 2319290 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2105 AHA_2106 AHA_2106 AHA_2106 2319364 2320089 - prolyl-tRNA synthetase identified by match to protein family HMM PF04073 gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2106 AHA_2107 AHA_2107 polB polB 2320065 2322494 + DNA polymerase II Has polymerase%2C DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2107 AHA_2108 AHA_2108 AHA_2108 2322629 2322705 - tRNA-Val tRNA gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2108 AHA_2109 AHA_2109 AHA_2109 2322743 2322819 - tRNA-Val tRNA gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2109 AHA_2110 AHA_2110 AHA_2110 2322825 2322902 - tRNA-OTHER tRNA gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2110 AHA_2111 AHA_2111 AHA_2111 2322941 2323017 - tRNA-Val tRNA gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2111 AHA_2112 AHA_2112 AHA_2112 2323035 2323111 - tRNA-Val tRNA gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2112 AHA_2113 AHA_2113 AHA_2113 2323124 2323200 - tRNA-Val tRNA gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2113 AHA_2114 AHA_2114 AHA_2114 2323361 2324740 - multidrug resistance protein MdtK identified by similarity to SP:P37340%3B match to protein family HMM PF01554%3B match to protein family HMM TIGR00797 gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2114 AHA_2115 AHA_2115 AHA_2115 2324887 2325093 - hypothetical protein gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2115 AHA_2116 AHA_2116 ribE-1 ribE-1 2325224 2325841 + riboflavin synthase subunit alpha catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2116 AHA_2117 AHA_2117 AHA_2117 2325931 2326134 - hypothetical protein gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2117 AHA_2118 AHA_2118 AHA_2118 2326273 2326932 - 2-deoxyglucose-6-phosphatase YniC%3B catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate%2C mannose 6-phosphate and p-nitrophenyl phosphate gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2118 AHA_2119 AHA_2119 purT purT 2327059 2328237 - phosphoribosylglycinamide formyltransferase 2 non-folate utilizing enzyme%2C catalyzes the production of beta-formyl glycinamide ribonucleotide from formate%2C ATP%2C and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP%3B involved in de novo purine biosynthesis gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2119 AHA_2120 AHA_2120 AHA_2120 2328323 2329273 - drug/metabolite exporter family protein identified by match to protein family HMM PF00892 gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2120 AHA_2121 AHA_2121 AHA_2121 2329331 2330026 + ACP phosphodieterase identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358 gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2121 AHA_2122 AHA_2122 AHA_2122 2330123 2330299 - hypothetical protein gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2122 AHA_2123 AHA_2123 AHA_2123 2330466 2330654 - hypothetical protein gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2123 AHA_2124 AHA_2124 AHA_2124 2330651 2331217 - MarR family transcriptional regulator identified by match to protein family HMM PF01047 gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2124 AHA_2125 AHA_2125 AHA_2125 2331290 2332504 - hypothetical protein gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2125 AHA_2126 AHA_2126 AHA_2126 2331344 2332579 + hypothetical protein gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2126 AHA_2127 AHA_2127 AHA_2127 2332495 2333589 + nucleic acid binding protein gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2127 AHA_2128 AHA_2128 AHA_2128 2333590 2333901 + hypothetical protein identified by match to protein family HMM PF06945 gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2128 AHA_2129 AHA_2129 AHA_2129 2333943 2334443 - dsDNA-mimic protein highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2129 AHA_2130 AHA_2130 mtgA mtgA 2334565 2335272 - monofunctional biosynthetic peptidoglycan transglycosylase glycosyltransferase%3B polymerizes glycan strands in the peptidoglycan gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2130 AHA_2131 AHA_2131 AHA_2131 2335326 2335634 - dsDNA-mimic protein highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2131 AHA_2132 AHA_2132 minE minE 2335842 2336108 - cell division topological specificity factor MinE works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2132 AHA_2133 AHA_2133 minD minD 2336111 2336923 - septum site-determining protein MinD identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR01968 gene gene2131 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2133 AHA_2134 AHA_2134 minC minC 2336942 2337664 - septum site-determining protein MinC identified by match to protein family HMM PF03775%3B match to protein family HMM PF05209%3B match to protein family HMM TIGR01222 gene gene2132 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2134 AHA_2135 AHA_2135 AHA_2135 2337772 2338053 + hypothetical protein identified by match to protein family HMM PF05166 gene gene2133 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2135 AHA_2136 AHA_2136 AHA_2136 2338050 2339009 + membrane-bound lytic murein transglycosylase B identified by match to protein family HMM TIGR02283 gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2136 AHA_2137 AHA_2137 sdaA-1 sdaA-1 2339228 2340598 - L-serine ammonia-lyase identified by match to protein family HMM PF03313%3B match to protein family HMM PF03315%3B match to protein family HMM TIGR00720 gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2137 AHA_2138 AHA_2138 sdaA-2 sdaA-2 2340876 2342258 - L-serine ammonia-lyase identified by match to protein family HMM PF03313%3B match to protein family HMM PF03315%3B match to protein family HMM TIGR00720 gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2138 AHA_2139 AHA_2139 AHA_2139 2342462 2342788 - hypothetical protein identified by match to protein family HMM PF06865 gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2139 AHA_2140 AHA_2140 AHA_2140 2343016 2344254 + proton/glutamate symporter identified by match to protein family HMM PF00375 gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2140 AHA_2141 AHA_2141 AHA_2141 2344315 2344743 - MerR family transcriptional regulator identified by match to protein family HMM PF00376 gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2141 AHA_2142 AHA_2142 AHA_2142 2345992 2347215 - sensory box/GGDEF family protein identified by match to protein family HMM PF00563 gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2142 AHA_2143 AHA_2143 atoB atoB 2344832 2345995 + acetyl-CoA acetyltransferase identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930 gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2143 AHA_2144 AHA_2144 AHA_2144 2347345 2348601 - long-chain fatty acid transport protein identified by match to protein family HMM PF03349 gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2144 AHA_2145 AHA_2145 AHA_2145 2348855 2350153 - long-chain fatty acid transport protein identified by match to protein family HMM PF03349 gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2145 AHA_2146 AHA_2146 AHA_2146 2350564 2351307 - hypothetical protein gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2146 AHA_2147 AHA_2147 AHA_2147 2351300 2351890 - RNA polymerase sigma factor Bacteria have multiple sigma factors which are active under specific conditions%3B the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2147 AHA_2148 AHA_2148 AHA_2148 2351924 2353444 - hypothetical protein gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2148 AHA_2149 AHA_2149 AHA_2149 2353441 2354940 - hypothetical protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2149 AHA_2150 AHA_2150 AHA_2150 2354940 2355953 - von Willebrand factor A identified by match to protein family HMM PF00092 gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2150 AHA_2151 AHA_2151 AHA_2151 2356516 2357460 - hypothetical protein identified by match to protein family HMM PF01882 gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2151 AHA_2152 AHA_2152 AHA_2152 2357441 2358391 - MoxR protein identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728 gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2152 AHA_2153 AHA_2153 fadI fadI 2358585 2359895 + 3-ketoacyl-CoA thiolase FadI%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadJ%3B similar to FadA2B2 complex%3B functions in beta-oxidation of fatty acids during anaerobic growth gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2153 AHA_2154 AHA_2154 fadJ fadJ 2359895 2362042 + multifunctional fatty acid oxidation complex subunit alpha multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI%3B similar to FadA2B2 complex%3B involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2154 AHA_2155 AHA_2155 AHA_2155 2362338 2362478 + hypothetical protein identified by match to protein family HMM TIGR02808 gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2155 AHA_2156 AHA_2156 AHA_2156 2362578 2363228 + YaeQ protein identified by match to protein family HMM PF07152 gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2156 AHA_2157 AHA_2157 AHA_2157 2363240 2364124 + auxin efflux carrier identified by match to protein family HMM PF03547 gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2157 AHA_2158 AHA_2158 AHA_2158 2365002 2365982 - hypothetical protein gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2158 AHA_2159 AHA_2159 AHA_2159 2366991 2367407 + hypothetical protein gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2159 AHA_2160 AHA_2160 AHA_2160 2367459 2369393 + sigma-54-dependent transcriptional regulator YgeV identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2160 AHA_2161 AHA_2161 AHA_2161 2369822 2371009 + aspartate/ornithine carbamoyltransferase family protein identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729 gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2161 AHA_2162 AHA_2162 AHA_2162 2371137 2372336 + diaminopropionate ammonia-lyase catalyzes the formation of pyruvate from 2%2C3-diaminopropionate gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2162 AHA_2163 AHA_2163 AHA_2163 2372460 2373677 + peptidase Zn-dependent extracellular dipeptidase%3B similar to succinyl-diaminopimelate desuccinylases gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2163 AHA_2164 AHA_2164 hydA hydA 2373796 2375220 + phenylhydantoinase catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2164 AHA_2165 AHA_2165 arcC-1 arcC-1 2375316 2376248 + carbamate kinase catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2165 AHA_2166 AHA_2166 AHA_2166 2376431 2377354 + inner membrane transport protein YijE identified by match to protein family HMM PF00892 gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2166 AHA_2167 AHA_2167 AHA_2167 2377424 2379016 - xanthine dehydrogenase accessory factor identified by match to protein family HMM PF02625 gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2167 AHA_2168 AHA_2168 AHA_2168 2379036 2379884 - hypothetical protein gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2168 AHA_2169 AHA_2169 AHA_2169 2379865 2380518 + hypothetical protein gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2169 AHA_2170 AHA_2170 AHA_2170 2380939 2384049 + selenate reductase subunit YgfK with YgfM and YgfN forms a selenate reductase%2C which seems to catalyze the reduction of selenate to selenite%3B YgfK mutants are unable to reduce selenate%3B involved in purine salvage process%3B seems to act as an oxidoreductase%2C but sequence similarity suggests it is a dihydrothymine dehydrogenase gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2170 AHA_2171 AHA_2171 AHA_2171 2384080 2385408 + chlorohydrolase/aminohydrolase in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2171 AHA_2172 AHA_2172 AHA_2172 2385489 2386265 + selenate reductase subunit YgfM with YgfK and YgfN forms a selenate reductase%2C which seems to catalyze the reduction of selenate to selenite%3B YgfM contains a FAD domain gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2172 AHA_2173 AHA_2173 AHA_2173 2386265 2389159 + selenate reductase subunit YgfN with YgfK and YgfM forms a selenate reductase%2C which seems to catalyze the reduction of selenate to selenite%3B molybdopterin-containing enzyme%3B oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2173 AHA_2174 AHA_2174 AHA_2174 2389255 2390772 + xanthine/uracil permease family protein identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR00801 gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2174 AHA_2175 AHA_2175 AHA_2175 2390797 2392113 + guanine deaminase Catalyzes the deamination of guanine gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2175 AHA_2176 AHA_2176 AHA_2176 2392395 2393771 + xanthine/uracil permease family protein identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916 gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2176 AHA_2177 AHA_2177 AHA_2177 2394101 2396419 + xanthine dehydrogenase subunit XdhA molybdenum cofactor-binding protein%3B participates in purine salvage gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2177 AHA_2178 AHA_2178 AHA_2178 2396412 2397290 + xanthine dehydrogenase subunit XdhB FAD-binding subunit%3B with XdhA and XdhC participates in purine salvage gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2178 AHA_2179 AHA_2179 AHA_2179 2397287 2397772 + xanthine dehydrogenase subunit XdhC iron-sulfur-binding subunit%3B with XdhA and XdhB participates in purine salvage gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2179 AHA_2180 AHA_2180 AHA_2180 2398305 2401523 + nuclease identified by match to protein family HMM PF03160%3B match to protein family HMM PF03372 gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2180 AHA_2181 AHA_2181 AHA_2181 2401661 2402206 - hypothetical protein identified by match to protein family HMM PF05433 gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2181 AHA_2182 AHA_2182 AHA_2182 2402710 2402898 + hypothetical protein gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2182 AHA_2183 AHA_2183 AHA_2183 2402958 2404484 - transporter identified by match to protein family HMM PF03600%3B match to protein family HMM PF03606 gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2183 AHA_2184 AHA_2184 AHA_2184 2405120 2406742 + AMP-binding protein identified by match to protein family HMM PF00501 gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2184 AHA_2185 AHA_2185 AHA_2185 2406798 2408375 + KAP P-loop domain-containing protein identified by match to protein family HMM PF07693 gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2185 AHA_2186 AHA_2186 AHA_2186 2408415 2409050 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2186 AHA_2187 AHA_2187 hisF hisF 2409043 2409816 - imidazole glycerol phosphate synthase subunit HisF catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]-1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamideribonucleotide and glutamate%3B the HisF subunit acts as a cyclase gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2187 AHA_2188 AHA_2188 AHA_2188 2409997 2413968 - hypothetical protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2188 AHA_2189 AHA_2189 AHA_2189 2413965 2416118 - hypothetical protein identified by match to protein family HMM PF00989%3B match to protein family HMM TIGR00229 gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2189 AHA_2190 AHA_2190 AHA_2190 2416111 2417220 - response regulator receiver identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966 gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2190 AHA_2191 AHA_2191 hisA hisA 2417386 2418129 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l-(5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2191 AHA_2192 AHA_2192 hisH hisH 2418135 2418776 - imidazole glycerol phosphate synthase subunit HisH with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2192 AHA_2193 AHA_2193 AHA_2193 2418776 2419927 - imidazole glycerol-phosphate dehydratase/histidinol phosphatase catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2193 AHA_2194 AHA_2194 hisC hisC 2419943 2421013 - histidinol-phosphate aminotransferase catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2194 AHA_2195 AHA_2195 hisD hisD 2421010 2422335 - histidinol dehydrogenase catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2195 AHA_2196 AHA_2196 hisG hisG 2422348 2423244 - ATP phosphoribosyltransferase long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2196 AHA_2198 AHA_2198 AHA_2198 2423584 2423826 + hypothetical protein gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2198 AHA_2199 AHA_2199 AHA_2199 2423894 2425816 + ATP-dependent helicase DinG gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2199 AHA_2200 AHA_2200 AHA_2200 2425813 2425905 + hypothetical protein gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2200 AHA_2201 AHA_2201 AHA_2201 2425935 2426627 + glycoprotease family protein identified by match to protein family HMM PF00814 gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2201 AHA_2202 AHA_2202 AHA_2202 2426722 2427237 + Slp family outer membrane lipoprotein identified by match to protein family HMM PF03843%3B match to protein family HMM TIGR00752 gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2202 AHA_2203 AHA_2203 AHA_2203 2427255 2428112 + alpha/beta hydrolase identified by match to protein family HMM PF00561 gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2203 AHA_2204 AHA_2204 AHA_2204 2428311 2429987 + long-chain-fatty-acid--CoA ligase identified by match to protein family HMM PF00501 gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2204 AHA_2205 AHA_2205 rnd rnd 2430057 2431196 + ribonuclease D identified by match to protein family HMM PF00570%3B match to protein family HMM PF01612%3B match to protein family HMM TIGR01388 gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2205 AHA_2206 AHA_2206 AHA_2206 2431244 2432002 - hypothetical protein gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2206 AHA_2207 AHA_2207 AHA_2207 2432097 2432465 - DksA-type zinc finger protein gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2207 AHA_2208 AHA_2208 AHA_2208 2432563 2433507 - tRNA-dihydrouridine synthase C identified by match to protein family HMM PF01207 gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2208 AHA_2209 AHA_2209 AHA_2209 2433726 2434103 + hypothetical protein identified by match to protein family HMM PF04304 gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2209 AHA_2210 AHA_2210 apt apt 2434133 2434780 + adenine phosphoribosyltransferase catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2210 AHA_2211 AHA_2211 dnaX dnaX 2434963 2437512 + DNA polymerase III subunits gamma and tau identified by match to protein family HMM PF00004%3B match to protein family HMM TIGR02397 gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2211 AHA_2212 AHA_2212 AHA_2212 2437628 2437957 + hypothetical protein identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103 gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2212 AHA_2213 AHA_2213 AHA_2213 2438143 2439831 - dolichyl-phosphate-mannose-protein mannosyltransferase family protein identified by match to protein family HMM PF02366 gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2213 AHA_2214 AHA_2214 AHA_2214 2440212 2440325 + hypothetical protein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2214 AHA_2215 AHA_2215 AHA_2215 2440869 2441939 + LuxR family transcriptional regulator identified by match to protein family HMM PF00196 gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2215 AHA_2216 AHA_2216 AHA_2216 2442024 2442446 + hypothetical protein identified by match to protein family HMM PF00571 gene gene2213 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2216 AHA_2217 AHA_2217 hrpA hrpA 2442664 2446563 + ATP-dependent RNA helicase HrpA involved in the post-transcriptional processing of the daa operon mRNA%2C which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2217 AHA_2218 AHA_2218 AHA_2218 2446630 2447496 + hypothetical protein gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2218 AHA_2219 AHA_2219 AHA_2219 2447522 2447890 + 50S ribosomal protein L25 the Ctc family of proteins consists of two types%2C one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2219 AHA_2220 AHA_2220 AHA_2220 2448084 2451266 + two-component system sensor protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2220 AHA_2221 AHA_2221 AHA_2221 2452254 2452898 - metallo-beta-lactamase family protein identified by match to protein family HMM PF00753 gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2221 AHA_2222 AHA_2222 AHA_2222 2451263 2452264 + two-component system regulatory protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966 gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2222 AHA_2223 AHA_2223 AHA_2223 2452926 2454026 - tRNA 2-selenouridine synthase catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2223 AHA_2224 AHA_2224 selD selD 2454023 2455060 - selenophosphate synthetase catalyzes the formation of selenophosphate from selenide and ATP gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2224 AHA_2225 AHA_2225 AHA_2225 2455446 2456630 - acyltransferase identified by match to protein family HMM PF01757 gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2225 AHA_2226 AHA_2226 AHA_2226 2456891 2457535 + glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2226 AHA_2227 AHA_2227 AHA_2227 2458017 2459258 - methyltransferase identified by match to protein family HMM PF03602 gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2227 AHA_2228 AHA_2228 AHA_2228 2459558 2461072 + flagellin identified by similarity to GB:AAC45642.1%3B match to protein family HMM PF00669%3B match to protein family HMM PF00700 gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2228 AHA_2229 AHA_2229 AHA_2229 2461230 2462660 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2229 AHA_2230 AHA_2230 AHA_2230 2462746 2463018 + acylphosphatase identified by match to protein family HMM PF00708 gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2230 AHA_2231 AHA_2231 AHA_2231 2463096 2463731 - glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2231 AHA_2232 AHA_2232 AHA_2232 2463959 2464921 + hypothetical protein gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2232 AHA_2233 AHA_2233 metG metG 2464976 2467009 - methionyl-tRNA synthetase methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2233 AHA_2234 AHA_2234 AHA_2234 2467196 2468278 + mrp protein identified by match to protein family HMM PF01656 gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2234 AHA_2235 AHA_2235 udk udk 2468388 2469032 + uridine kinase functions in pyrimidine salvage%3B pyrimidine ribonucleoside kinase%3B phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2235 AHA_2236 AHA_2236 dcd dcd 2469096 2469677 + deoxycytidine triphosphate deaminase Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2236 AHA_2237 AHA_2237 AHA_2237 2469711 2469803 - hypothetical protein gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2237 AHA_2238 AHA_2238 AHA_2238 2470085 2471554 + inorganic phosphate transporter identified by match to protein family HMM PF01384 gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2238 AHA_2239 AHA_2239 AHA_2239 2472370 2475489 - ribonuclease E identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00757 gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2239 AHA_2240 AHA_2240 AHA_2240 2475862 2476845 + ribosomal large subunit pseudouridine synthase C identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2240 AHA_2241 AHA_2241 AHA_2241 2476845 2477492 + HAD family hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2241 AHA_2242 AHA_2242 maf-2 maf-2 2477570 2478280 - septum formation protein Maf identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172 gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2242 AHA_2243 AHA_2243 AHA_2243 2478335 2479528 + multidrug efflux system protein MdtL Confers resistance to chloramphenicol gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2243 AHA_2244 AHA_2244 AHA_2244 2479531 2480505 + HTH-type transcriptional regulator YidZ identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2244 AHA_2245 AHA_2245 AHA_2245 2480575 2481240 + hypothetical protein gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2245 AHA_2246 AHA_2246 AHA_2246 2481489 2482010 + hypothetical protein identified by match to protein family HMM PF02620 gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2246 AHA_2247 AHA_2247 rpmF rpmF 2482030 2482197 + 50S ribosomal protein L32 some L32 proteins have zinc finger motifs consisting of CXXC while others do not gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2247 AHA_2248 AHA_2248 plsX plsX 2482207 2483226 + glycerol-3-phosphate acyltransferase PlsX involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsY gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2248 AHA_2249 AHA_2249 fabH fabH 2483234 2484193 + 3-oxoacyl-ACP synthase FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2249 AHA_2250 AHA_2250 fabD fabD 2484263 2485198 + malonyl CoA-acyl carrier protein transacylase identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128 gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2250 AHA_2251 AHA_2251 fabG fabG 2485212 2485946 + 3-oxoacyl-ACP reductase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM TIGR01830 gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2251 AHA_2252 AHA_2252 acpP acpP 2486104 2486340 + acyl carrier protein carries the fatty acid chain in fatty acid biosynthesis gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2252 AHA_2253 AHA_2253 AHA_2253 2486423 2487664 + beta-ketoacyl-acyl carrier protein synthase II identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2253 AHA_2254 AHA_2254 AHA_2254 2487684 2488538 + aminodeoxychorismate lyase identified by match to protein family HMM PF01063 gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2254 AHA_2255 AHA_2255 AHA_2255 2488618 2489529 + hypothetical protein identified by match to protein family HMM PF02618%3B match to protein family HMM TIGR00247 gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2255 AHA_2256 AHA_2256 tmk tmk 2489529 2490170 + thymidylate kinase identified by match to protein family HMM PF02223%3B match to protein family HMM TIGR00041 gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2256 AHA_2257 AHA_2257 holB holB 2490155 2491102 + DNA polymerase III subunit delta' identified by match to protein family HMM TIGR00678 gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2257 AHA_2258 AHA_2258 AHA_2258 2491124 2491903 + deoxyribonuclease YcfH identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010 gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2258 AHA_2259 AHA_2259 AHA_2259 2492203 2493231 + phage integrase family protein identified by match to protein family HMM PF00589 gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2259 AHA_2260 AHA_2260 AHA_2260 2493392 2493694 - hypothetical protein gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2260 AHA_2261 AHA_2261 AHA_2261 2493410 2493679 + hypothetical protein gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2261 AHA_2262 AHA_2262 yebU yebU 2493900 2495510 - rRNA (cytosine-C(5)-)-methyltransferase RsmF in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2262 AHA_2263 AHA_2263 AHA_2263 2495458 2498010 - paraquat-inducible protein B identified by match to protein family HMM PF02470 gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2263 AHA_2264 AHA_2264 AHA_2264 2498071 2499289 - PqiA family protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF04403 gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2264 AHA_2265 AHA_2265 prpB prpB 2499438 2500325 + 2-methylisocitrate lyase catalyzes the formation of pyruvate and succinate from 2-methylisocitrate gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2265 AHA_2266 AHA_2266 AHA_2266 2500337 2501464 + 2-methylcitrate synthase identified by match to protein family HMM PF00285%3B match to protein family HMM TIGR01800 gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2266 AHA_2267 AHA_2267 prpD prpD 2501594 2503039 + 2-methylcitrate dehydratase functions in propionate metabolism%3B involved in isomerization of (2S%2C3S)-methylcitrate to (2R%2C3S)-methylisocitrate%3B also encodes minor aconitase or dehydratase activity%3B aconitase C gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2267 AHA_2268 AHA_2268 AHA_2268 2503124 2503867 - hypothetical protein gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2268 AHA_2269 AHA_2269 AHA_2269 2504067 2504444 + polyhydroxyalkanoic acid system protein identified by match to protein family HMM TIGR02610 gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2269 AHA_2270 AHA_2270 AHA_2270 2504725 2506149 + hypothetical protein identified by match to protein family HMM PF03007 gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2270 AHA_2271 AHA_2271 AHA_2271 2506265 2507065 - hypothetical protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2271 AHA_2272 AHA_2272 AHA_2272 2507108 2507758 - TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2272 AHA_2273 AHA_2273 AHA_2273 2507760 2508944 - patatin family phospholipase identified by match to protein family HMM PF01734 gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2273 AHA_2274 AHA_2274 AHA_2274 2509033 2509611 - protein PhaF identified by match to protein family HMM PF05597%3B match to protein family HMM TIGR01837 gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2274 AHA_2275 AHA_2275 AHA_2275 2509917 2511830 + short chain dehydrogenase identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF07993 gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2275 AHA_2276 AHA_2276 AHA_2276 2511880 2512803 - lipase transmembrane protein identified by match to protein family HMM PF07819 gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2276 AHA_2277 AHA_2277 AHA_2277 2512950 2513264 + DNA damage-inducible protein identified by match to protein family HMM PF07130 gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2277 AHA_2278 AHA_2278 AHA_2278 2513543 2514820 + phage integrase family site specific recombinase identified by match to protein family HMM PF00589 gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2278 AHA_2279 AHA_2279 AHA_2279 2515032 2517011 + S16 family peptidase gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2279 AHA_2280 AHA_2280 fabA fabA 2517093 2517653 + 3-hydroxydecanoyl-ACP dehydratase catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2280 AHA_2281 AHA_2281 AHA_2281 2517736 2517912 - ribosome modulation factor identified by match to protein family HMM PF04957 gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2281 AHA_2282 AHA_2282 AHA_2282 2518076 2519713 - hypothetical protein gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2282 AHA_2283 AHA_2283 uup uup 2519722 2521644 - ABC transporter ATP-binding protein identified by similarity to SP:P43672%3B match to protein family HMM PF00005 gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2283 AHA_2284 AHA_2284 AHA_2284 2521719 2521949 - thiol-disulfide isomerase and thioredoxin identified by match to protein family HMM PF05768 gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2284 AHA_2285 AHA_2285 rlmL rlmL 2521949 2524111 - 23S rRNA m(2)G2445 methyltransferase catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2285 AHA_2286 AHA_2286 AHA_2286 2524817 2525353 - hypothetical protein identified by match to protein family HMM PF07126 gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2286 AHA_2287 AHA_2287 pyrD pyrD 2525441 2526451 - dihydroorotate dehydrogenase 2 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2287 AHA_2288 AHA_2288 AHA_2288 2526528 2531366 - NAD-glutamate dehydrogenase identified by match to protein family HMM PF05088 gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2288 AHA_2289 AHA_2289 AHA_2289 2531645 2531866 - hypothetical protein gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2289 AHA_2290 AHA_2290 pepN pepN 2531939 2534563 - aminopeptidase identified by similarity to SP:P04825%3B match to protein family HMM PF01433%3B match to protein family HMM TIGR02414 gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2290 AHA_2291 AHA_2291 prc prc 2534698 2536713 - carboxy-terminal protease Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2291 AHA_2292 AHA_2292 proQ proQ 2536722 2537360 - solute/DNA competence effector affects solute and DNA transport through an unknown mechanism gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2292 AHA_2293 AHA_2293 AHA_2293 2537462 2537920 - GAF domain-containing protein identified by match to protein family HMM PF01590 gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2293 AHA_2294 AHA_2294 AHA_2294 2538031 2538489 - hypothetical protein gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2294 AHA_2295 AHA_2295 ccoN ccoN 2538707 2540197 + cbb3-type cytochrome c oxidase subunit I CcoN%3B FixN gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2295 AHA_2296 AHA_2296 ccoO ccoO 2540214 2540828 + cbb3-type cytochrome c oxidase subunit II CcoO%3B FixO gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2296 AHA_2297 AHA_2297 ccoQ ccoQ 2540841 2541020 + cytochrome c oxidase%2C cbb3-type%2C CcoQ subunit identified by similarity to GB:AAM76066.1%3B match to protein family HMM PF05545 gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2297 AHA_2298 AHA_2298 ccoP ccoP 2541020 2542009 + cytochrome c oxidase%2C cbb3-type subunit III identified by similarity to GB:AAM76067.1%3B match to protein family HMM PF00034%3B match to protein family HMM TIGR00782 gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2298 AHA_2299 AHA_2299 AHA_2299 2542128 2542616 + hypothetical protein gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2299 AHA_2300 AHA_2300 AHA_2300 2542709 2545108 + copper-translocating P-type ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2300 AHA_2301 AHA_2301 ccoS ccoS 2545237 2545428 + cbb3-type cytochrome oxidase maturation protein identified by match to protein family HMM PF03597%3B match to protein family HMM TIGR00847 gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2301 AHA_2302 AHA_2302 AHA_2302 2545412 2546098 + integral membrane protein gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2302 AHA_2303 AHA_2303 fnr fnr 2546167 2546922 + fumarate/nitrate reduction transcriptional regulator Global transcription factor that controls the expression of over 100 target genes in response to anoxia gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2303 AHA_2304 AHA_2304 AHA_2304 2547057 2548001 + universal stress protein UspE with UspC and UspD is involved in resistance to UV irradiation gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2304 AHA_2305 AHA_2305 AHA_2305 2548069 2548977 + C32 tRNA thiolase TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2305 AHA_2306 AHA_2306 AHA_2306 2549062 2549739 - hypothetical protein gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2306 AHA_2307 AHA_2307 AHA_2307 2549811 2550575 - hypothetical protein gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2307 AHA_2308 AHA_2308 AHA_2308 2550817 2551434 + glutathione S-transferase identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798 gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2308 AHA_2309 AHA_2309 rbsD rbsD 2551640 2552059 + D-ribose-binding protein RbsD identified by match to protein family HMM PF05025 gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2309 AHA_2310 AHA_2310 rbsA rbsA 2552093 2553610 + D-ribose transporter ATP-binding protein with RbsBCD acts to import ribose into the cell%3B RbsA contains 2 ATP-binding domain gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2310 AHA_2311 AHA_2311 rbsC rbsC 2553607 2554572 + ribose ABC transporter permease functions to transport ribose at high affinity%3B forms a complex with RbsA2C2B gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2311 AHA_2312 AHA_2312 rbsB rbsB 2554594 2555469 + D-ribose transporter subunit RbsB periplasmic substrate-binding component of the ATP-dependent ribose transport system gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2312 AHA_2313 AHA_2313 rbsK rbsK 2555577 2556509 + ribokinase catalyzes the formation of D-ribose 5-phosphate from ribose gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2313 AHA_2314 AHA_2314 AHA_2314 2556509 2557513 + LacI family transcriptional regulator identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2314 AHA_2315 AHA_2315 AHA_2315 2557609 2559261 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2315 AHA_2316 AHA_2316 AHA_2316 2559258 2559734 - hypothetical protein gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2316 AHA_2317 AHA_2317 AHA_2317 2559824 2560597 - nicotinic acid mononucleotide:5%2C 6-dimethylbenzimidazole(DMB)phosphoribosyltransferase identified by match to protein family HMM PF02146 gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2317 AHA_2318 AHA_2318 AHA_2318 2560682 2561281 - acetyltransferase identified by match to protein family HMM PF00583 gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2318 AHA_2319 AHA_2319 AHA_2319 2561285 2562532 - response regulator receiver domain-containing protein identified by match to protein family HMM PF00072 gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2319 AHA_2320 AHA_2320 AHA_2320 2562534 2566457 - hypothetical protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2320 AHA_2321 AHA_2321 ihfA ihfA 2566548 2566844 - integration host factor subunit alpha identified by match to protein family HMM PF00216%3B match to protein family HMM TIGR00987 gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2321 AHA_2322 AHA_2322 pheT pheT 2566848 2569244 - phenylalanyl-tRNA synthetase subunit beta catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2322 AHA_2323 AHA_2323 pheS pheS 2569257 2570240 - phenylalanyl-tRNA synthetase subunit alpha catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a heterotetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 1 subfamily gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2323 AHA_2324 AHA_2324 rplT rplT 2570557 2570913 - 50S ribosomal protein L20 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2324 AHA_2325 AHA_2325 rpmI rpmI 2570929 2571126 - 50S ribosomal protein L35 identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001 gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2325 AHA_2326 AHA_2326 infC infC 2571213 2571620 - translation initiation factor IF-3 identified by match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168 gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2326 AHA_2327 AHA_2327 thrS thrS 2571765 2573693 - threonyl-tRNA synthetase catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2327 AHA_2328 AHA_2328 AHA_2328 2573930 2574583 - hypothetical protein gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2328 AHA_2329 AHA_2329 AHA_2329 2574692 2575750 + radical SAM protein identified by match to protein family HMM PF04055 gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2329 AHA_2330 AHA_2330 gyrA gyrA 2576258 2579005 - DNA gyrase subunit A identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063 gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2330 AHA_2331 AHA_2331 ubiG ubiG 2579156 2579923 + ubiquinone biosynthesis O-methyltransferase identified by match to protein family HMM PF01209%3B match to protein family HMM PF02353%3B match to protein family HMM TIGR01983 gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2331 AHA_2332 AHA_2332 gph-1 gph-1 2579923 2580609 + phosphoglycolate phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01449%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2332 AHA_2333 AHA_2333 nrdA nrdA 2581152 2583455 + ribonucleotide-diphosphate reductase subunit alpha Catalyzes the rate-limiting step in dNTP synthesis gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2333 AHA_2334 AHA_2334 nrdB nrdB 2583522 2584655 + ribonucleotide-diphosphate reductase subunit beta B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2334 AHA_2335 AHA_2335 AHA_2335 2584727 2584972 + (Fe-S)-binding protein identified by match to protein family HMM PF00111 gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2335 AHA_2336 AHA_2336 mltA mltA 2585091 2586242 - murein transglycosylase A membrane-bound%2C lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2336 AHA_2337 AHA_2337 AHA_2337 2586393 2586644 + MutT/nudix family protein identified by match to protein family HMM PF06945 gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2337 AHA_2338 AHA_2338 AHA_2338 2586669 2587826 - mannose-6-phosphate isomerase identified by match to protein family HMM PF07221 gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2338 AHA_2339 AHA_2339 AHA_2339 2587912 2588760 - fructose permease IID component identified by match to protein family HMM PF03613 gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2339 AHA_2340 AHA_2340 AHA_2340 2588760 2589563 - PTS system fructose(mannose)-specific transporter subunit IIC identified by match to protein family HMM PF03609 gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2340 AHA_2341 AHA_2341 AHA_2341 2589576 2590070 - pts system mannose-specific eiiab component (eiiab-man) identified by match to protein family HMM PF03830 gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2341 AHA_2342 AHA_2342 AHA_2342 2590080 2590511 - PTS system mannose/fructose/sorbose family transporter subunit IIA identified by similarity to GB:AAV43496.1%3B match to protein family HMM PF03610 gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2342 AHA_2343 AHA_2343 AHA_2343 2590517 2592283 - hypothetical protein gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2343 AHA_2344 AHA_2344 malI-2 malI-2 2592505 2593503 + maltose regulon regulatory protein MalI identified by similarity to SP:P18811%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2344 AHA_2345 AHA_2345 AHA_2345 2593525 2594094 - glucose-6-phosphate isomerase catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2345 AHA_2346 AHA_2346 fruA fruA 2594283 2596007 - PTS system%2C fructose-specific%2C IIBC component identified by similarity to SP:P20966%3B match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR01427 gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2346 AHA_2347 AHA_2347 AHA_2347 2596004 2596993 - 1-phosphofructokinase identified by match to protein family HMM PF00294 gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2347 AHA_2348 AHA_2348 AHA_2348 2596993 2598093 - bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein phosphoenolpyruvate (PEP)-dependent%2C sugar transporting phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2348 AHA_2349 AHA_2349 fruR fruR 2598402 2599385 + DNA-binding transcriptional regulator FruR binds D-fructose as an inducer%3B involved in regulation of operons for central pathways of carbon metabolism gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2349 AHA_2350 AHA_2350 AHA_2350 2599692 2600885 + tyrosine-specific transport protein identified by match to protein family HMM PF01490%3B match to protein family HMM PF03222%3B match to protein family HMM TIGR00837 gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2350 AHA_2351 AHA_2351 AHA_2351 2601147 2601551 + hypothetical protein gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2351 AHA_2352 AHA_2352 AHA_2352 2601551 2602240 + hypothetical protein gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2352 AHA_2353 AHA_2353 AHA_2353 2602347 2603747 - ATP-dependent RNA helicase RhlE identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2353 AHA_2354 AHA_2354 AHA_2354 2604071 2604886 + extracellular solute-binding protein gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2354 AHA_2355 AHA_2355 aroC aroC 2604987 2606075 - chorismate synthase catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2355 AHA_2356 AHA_2356 AHA_2356 2606088 2607023 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase involved in methylation of ribosomal protein L3 gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2356 AHA_2357 AHA_2357 AHA_2357 2607089 2607613 + Smr/MutS family protein identified by match to protein family HMM PF01713 gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2357 AHA_2358 AHA_2358 AHA_2358 2607712 2608122 - hypothetical protein gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2358 AHA_2359 AHA_2359 AHA_2359 2608344 2609639 + sensory box protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2359 AHA_2360 AHA_2360 AHA_2360 2609693 2610322 - phosphoglycerate mutase identified by match to protein family HMM PF00300 gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2360 AHA_2361 AHA_2361 AHA_2361 2610372 2610770 - hypothetical protein identified by match to protein family HMM PF04828 gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2361 AHA_2362 AHA_2362 AHA_2362 2610907 2611287 - glyoxalase identified by match to protein family HMM PF00903 gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2362 AHA_2363 AHA_2363 AHA_2363 2611743 2613191 - carbohydrate binding domain-containing protein identified by match to protein family HMM PF00182%3B match to protein family HMM PF02839 gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2363 AHA_2364 AHA_2364 AHA_2364 2613508 2614737 - hypothetical protein gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2364 AHA_2365 AHA_2365 AHA_2365 2614888 2615541 + PhnA protein identified by match to protein family HMM PF03831 gene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2365 AHA_2366 AHA_2366 AHA_2366 2615783 2615890 + hypothetical protein gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2366 AHA_2367 AHA_2367 AHA_2367 2616212 2617489 + hypothetical protein identified by match to protein family HMM PF07819 gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2367 AHA_2368 AHA_2368 AHA_2368 2617562 2618449 - phenazine biosynthesis protein PhzF identified by match to protein family HMM PF02567%3B match to protein family HMM TIGR00654 gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2368 AHA_2369 AHA_2369 AHA_2369 2618930 2619760 - hypothetical protein gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2369 AHA_2370 AHA_2370 AHA_2370 2619757 2620266 - hypothetical protein identified by match to protein family HMM PF00583 gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2370 AHA_2371 AHA_2371 AHA_2371 2620319 2620804 - acetyltransferase identified by match to protein family HMM PF00583 gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2371 AHA_2372 AHA_2372 AHA_2372 2620872 2621483 - ThiJ/pfpI family protein identified by match to protein family HMM PF01965 gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2372 AHA_2373 AHA_2373 def def 2621548 2622048 - peptide deformylase cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins%3B binds iron(2+) gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2373 AHA_2374 AHA_2374 AHA_2374 2622075 2622530 - histone acetyltransferase HPA2 identified by match to protein family HMM PF00583 gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2374 AHA_2375 AHA_2375 AHA_2375 2622834 2623259 - antibiotic biosynthesis monooxygenase family protein identified by match to protein family HMM PF03992 gene gene2372 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2375 AHA_2376 AHA_2376 AHA_2376 2623289 2623666 - RplA family protein identified by match to protein family HMM PF03330%3B match to protein family HMM TIGR00413 gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2376 AHA_2377 AHA_2377 mukB mukB 2623859 2628286 - cell division protein MukB SMC (structural maintenance of chromosomes) family of proteins%3B involved in chromosome condensatin and partitioning%3B forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ%3B mutations result in cell division defects gene gene2374 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2377 AHA_2378 AHA_2378 AHA_2378 2628314 2629051 - condesin subunit E acts with MukB and MukF to condense the chromosome and allow for segregation during cell division gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2378 AHA_2379 AHA_2379 AHA_2379 2629032 2630351 - condesin subunit F acts with MukB and MukE to condense the chromosome and allow for segregation during cell division gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2379 AHA_2380 AHA_2380 AHA_2380 2630429 2631205 - SmtA protein gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2380 AHA_2381 AHA_2381 AHA_2381 2631496 2632275 + integral membrane protein identified by match to protein family HMM PF02698 gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2381 AHA_2382 AHA_2382 tpiA tpiA 2632411 2633166 + triosephosphate isomerase Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2382 AHA_2383 AHA_2383 pfkA pfkA 2633314 2634285 + 6-phosphofructokinase identified by match to protein family HMM PF00365%3B match to protein family HMM TIGR02482 gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2383 AHA_2384 AHA_2384 AHA_2384 2635487 2636743 + M20D family peptidase identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891 gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2384 AHA_2385 AHA_2385 AHA_2385 2636825 2637505 - HAD-superfamily (subfamily IA) hydrolase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02254 gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2385 AHA_2386 AHA_2386 AHA_2386 2637514 2639010 - cytosol aminopeptidase identified by match to protein family HMM PF00883 gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2386 AHA_2387 AHA_2387 AHA_2387 2639183 2639259 - tRNA-Met tRNA gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2387 AHA_2388 AHA_2388 AHA_2388 2639357 2639433 - tRNA-Met tRNA gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2388 AHA_2389 AHA_2389 AHA_2389 2639530 2639606 - tRNA-Met tRNA gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2389 AHA_2390 AHA_2390 AHA_2390 2639703 2639779 - tRNA-Met tRNA gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2390 AHA_2391 AHA_2391 AHA_2391 2639876 2639952 - tRNA-Met tRNA gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2391 AHA_2392 AHA_2392 AHA_2392 2640049 2640125 - tRNA-Met tRNA gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2392 AHA_2393 AHA_2393 AHA_2393 2640222 2640298 - tRNA-Met tRNA gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2393 AHA_2394 AHA_2394 AHA_2394 2640391 2640467 - tRNA-Met tRNA gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2394 AHA_2395 AHA_2395 glgX-1 glgX-1 2640664 2642727 + glycogen debranching protein GlgX identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02100 gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2395 AHA_2396 AHA_2396 AHA_2396 2642798 2643517 - hypothetical protein gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2396 AHA_2397 AHA_2397 AHA_2397 2643727 2645364 - RedF-like protein gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2397 AHA_2398 AHA_2398 AHA_2398 2645626 2646513 - AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2398 AHA_2399 AHA_2399 AHA_2399 2646549 2647592 + membrane protein identified by match to protein family HMM PF00892 gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2399 AHA_2400 AHA_2400 AHA_2400 2647650 2648504 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2400 AHA_2401 AHA_2401 AHA_2401 2648588 2649367 - hypothetical protein identified by match to protein family HMM PF01925 gene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2401 AHA_2402 AHA_2402 AHA_2402 2649575 2650336 - DTW protein identified by match to protein family HMM PF03942 gene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2402 AHA_2403 AHA_2403 AHA_2403 2650504 2650917 + hypothetical protein identified by match to protein family HMM PF00903 gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2403 AHA_2404 AHA_2404 ddl ddl 2650996 2651985 - D-alanyl-alanine synthetase A D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2404 AHA_2405 AHA_2405 AHA_2405 2652186 2652881 - SM-20 domain-containing protein identified by match to protein family HMM PF03171 gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2405 AHA_2406 AHA_2406 AHA_2406 2653082 2653558 + peroxiredoxin HYR1 identified by match to protein family HMM PF00255 gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2406 AHA_2407 AHA_2407 AHA_2407 2653718 2655103 + ATP-dependent RNA helicase RhlE identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2407 AHA_2408 AHA_2408 AHA_2408 2655155 2655619 - GMP synthase identified by match to protein family HMM PF00583 gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2408 AHA_2409 AHA_2409 AHA_2409 2655637 2656128 - acetyltransferase identified by match to protein family HMM PF00583 gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2409 AHA_2410 AHA_2410 AHA_2410 2656162 2656494 - hypothetical protein identified by match to protein family HMM PF02694 gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2410 AHA_2411 AHA_2411 AHA_2411 2656667 2657512 - hypothetical protein gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2411 AHA_2412 AHA_2412 AHA_2412 2657869 2658441 + adenylate cyclase identified by match to protein family HMM PF01928%3B match to protein family HMM TIGR00318 gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2412 AHA_2413 AHA_2413 AHA_2413 2658399 2658830 + nudix family protein%2C MutT subfamily identified by match to protein family HMM PF00293 gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2413 AHA_2414 AHA_2414 AHA_2414 2659000 2659506 + acetyltransferase identified by match to protein family HMM PF00583 gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2414 AHA_2415 AHA_2415 gldA gldA 2659567 2660892 + glycerol dehydrogenase forms dimers and octamers%3B involved in conversion of glycerol to dihydroxy-acetone gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2415 AHA_2416 AHA_2416 AHA_2416 2661009 2661314 + antibiotic biosynthesis monooxygenase family protein identified by match to protein family HMM PF03992 gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2416 AHA_2417 AHA_2417 pdxY-2 pdxY-2 2661521 2662384 - pyridoxal kinase identified by similarity to SP:P77150%3B match to protein family HMM TIGR00687 gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2417 AHA_2418 AHA_2418 AHA_2418 2662991 2663746 - hypothetical protein identified by similarity to GB:BAA21812.1 gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2418 AHA_2419 AHA_2419 AHA_2419 2663825 2664388 - hypothetical protein gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2419 AHA_2420 AHA_2420 AHA_2420 2664707 2665057 + PHA granule-associated protein identified by match to protein family HMM TIGR02809 gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2420 AHA_2421 AHA_2421 AHA_2421 2665151 2666935 + poly-beta-hydroxybutyrate polymerase identified by match to protein family HMM PF00561%3B match to protein family HMM PF07167%3B match to protein family HMM TIGR01838 gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2421 AHA_2422 AHA_2422 AHA_2422 2666932 2667336 + enoyl-CoA hydratase identified by match to protein family HMM PF01575 gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2422 AHA_2423 AHA_2423 AHA_2423 2667526 2667759 + hypothetical protein gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2423 AHA_2424 AHA_2424 AHA_2424 2668020 2668556 - hypothetical protein identified by similarity to GB:BAC59878.1 gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2424 AHA_2425 AHA_2425 AHA_2425 2668644 2670395 - drug efflux ABC transporter ATP-binding and permease subunits identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2425 AHA_2426 AHA_2426 AHA_2426 2670392 2670508 - hypothetical protein gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2426 AHA_2427 AHA_2427 AHA_2427 2670505 2672241 - ABC transporter ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2427 AHA_2428 AHA_2428 AHA_2428 2672383 2675184 - sensory box histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518 gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2428 AHA_2429 AHA_2429 AHA_2429 2675339 2675767 + thioredoxin 2 identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068 gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2429 AHA_2430 AHA_2430 AHA_2430 2675933 2677321 + divalent anion:Na+ symporter (DASS) family protein identified by match to protein family HMM PF00939%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808%3B match to protein family HMM TIGR00785 gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2430 AHA_2431 AHA_2431 AHA_2431 2677574 2680048 - maltodextrin phosphorylase identified by match to protein family HMM PF00343%3B match to protein family HMM TIGR02093 gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2431 AHA_2432 AHA_2432 AHA_2432 2680434 2680694 - hypothetical protein gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2432 AHA_2433 AHA_2433 AHA_2433 2680877 2681353 + cell division inhibitor gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2433 AHA_2434 AHA_2434 AHA_2434 2681773 2683569 - fumarate hydratase%2C class I identified by match to protein family HMM PF05681%3B match to protein family HMM PF05683%3B match to protein family HMM TIGR00722%3B match to protein family HMM TIGR00723 gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2434 AHA_2435 AHA_2435 pabB pabB 2683506 2684879 + para-aminobenzoate synthase%2C component I identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00553 gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2435 AHA_2436 AHA_2436 AHA_2436 2684927 2685493 + MutT/nudix family protein identified by match to protein family HMM PF00293 gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2436 AHA_2437 AHA_2437 AHA_2437 2685709 2687007 + serine transporter family protein identified by similarity to SP:P0AAD6%3B match to protein family HMM PF01490%3B match to protein family HMM PF03222 gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2437 AHA_2438 AHA_2438 AHA_2438 2687428 2688678 - serine/threonine transporter SstT involved in the import of serine and threonine coupled with the import of sodium gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2438 AHA_2439 AHA_2439 AHA_2439 2689016 2690944 + DNA helicase identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR00614 gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2439 AHA_2440 AHA_2440 AHA_2440 2691510 2693432 + PrkA serine kinase identified by match to protein family HMM PF06798 gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2440 AHA_2441 AHA_2441 AHA_2441 2693456 2694727 + hypothetical protein identified by match to protein family HMM PF04285 gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2441 AHA_2442 AHA_2442 AHA_2442 2694738 2696255 + SpoVR family protein identified by match to protein family HMM PF04293 gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2442 AHA_2443 AHA_2443 AHA_2443 2696320 2697033 - fatty acid metabolism regulator Multifunctional regulator of fatty acid metabolism gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2443 AHA_2444 AHA_2444 nhaB nhaB 2697368 2698948 + sodium/proton antiporter involved in regulation of intracellular pH under alkaline conditions gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2444 AHA_2445 AHA_2445 dsbB dsbB 2699034 2699555 + disulfide bond formation protein B disulfide oxidoreductase%3B integral membrane protein%3B required for perioplasmic disulfide bond formation%3B oxidizes DsbA protein gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2445 AHA_2446 AHA_2446 AHA_2446 2699642 2700295 - DedA protein gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2446 AHA_2447 AHA_2447 AHA_2447 2700453 2700722 - hypothetical protein identified by match to protein family HMM PF06803 gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2447 AHA_2448 AHA_2448 uvrB uvrB 2700719 2702731 - excinuclease ABC subunit B The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2448 AHA_2449 AHA_2449 AHA_2449 2702867 2702942 + tRNA-Asn tRNA gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2449 AHA_2450 AHA_2450 AHA_2450 2703718 2705403 + hypothetical protein identified by match to protein family HMM PF02080%3B match to protein family HMM PF06826%3B match to protein family HMM TIGR01625 gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2450 AHA_2451 AHA_2451 AHA_2451 2705621 2707153 + lytic transglycosylase%2C catalytic identified by match to protein family HMM PF01464 gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2451 AHA_2452 AHA_2452 AHA_2452 2707384 2708349 + hypothetical protein identified by match to protein family HMM PF03401 gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2452 AHA_2453 AHA_2453 AHA_2453 2708392 2708853 + hypothetical protein gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2453 AHA_2454 AHA_2454 AHA_2454 2708863 2710395 + TctA protein identified by match to protein family HMM PF01970 gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2454 AHA_2455 AHA_2455 AHA_2455 2710474 2711139 - transcriptional regulatory protein CitT identified by match to protein family HMM PF00072 gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2455 AHA_2456 AHA_2456 dpiB dpiB 2711140 2712723 - sensor histidine kinase DpiB identified by similarity to SP:P77510%3B match to protein family HMM PF02518 gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2456 AHA_2457 AHA_2457 AHA_2457 2712720 2713955 - Mlc protein identified by match to protein family HMM PF00480 gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2457 AHA_2458 AHA_2458 AHA_2458 2714063 2715730 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2458 AHA_2459 AHA_2459 AHA_2459 2715742 2716317 + SecC motif-containing protein identified by match to protein family HMM PF02810 gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2459 AHA_2460 AHA_2460 glpA glpA 2716511 2718190 + sn-glycerol-3-phosphate dehydrogenase subunit A anaerobic%2C catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2460 AHA_2461 AHA_2461 AHA_2461 2718180 2719460 + anaerobic glycerol-3-phosphate dehydrogenase subunit B sn-glycerol-3-phosphate dehydrogenase (anaerobic)%3B catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate%3B part of GlpABC complex%3B presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2461 AHA_2462 AHA_2462 glpC glpC 2719512 2720714 + sn-glycerol-3-phosphate dehydrogenase subunit C anaerobic%3B with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2462 AHA_2463 AHA_2463 AHA_2463 2720802 2731490 - type I secretion target GGXGXDXXX repeat-containing protein identified by match to protein family HMM PF00353%3B match to protein family HMM TIGR01965 gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2463 AHA_2464 AHA_2464 nrfA nrfA 2732209 2733654 + cytochrome c552 catalyzes the formate-dependent reduction of nitrite to ammonia%3B cytochrome C552 gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2464 AHA_2465 AHA_2465 AHA_2465 2733706 2734320 + cytochrome c-type protein NrfB gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2465 AHA_2466 AHA_2466 AHA_2466 2734317 2735009 + 4Fe-4S ferredoxin identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01409 gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2466 AHA_2467 AHA_2467 AHA_2467 2735006 2735962 + protein NrfD identified by match to protein family HMM PF03916 gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2467 AHA_2468 AHA_2468 ccmF-2 ccmF-2 2736112 2738073 + cytochrome c-type biogenesis protein CcmF identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR00353 gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2468 AHA_2469 AHA_2469 AHA_2469 2738070 2738669 + thiol:disulfide interchange protein DsbE identified by match to protein family HMM TIGR00385 gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2469 AHA_2470 AHA_2470 AHA_2470 2738666 2739856 + formate-dependent nitrite reductase complex subunit NrfF identified by match to protein family HMM PF03918 gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2470 AHA_2471 AHA_2471 AHA_2471 2739994 2740449 + MutT/nudix family protein identified by match to protein family HMM PF00293 gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2471 AHA_2472 AHA_2472 AHA_2472 2740852 2741772 + D-alanyl-D-alanine carboxypeptidase identified by match to protein family HMM PF00768 gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2472 AHA_2473 AHA_2473 AHA_2473 2741866 2743416 - dimodular nonribosomal peptide synthetase identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR01733 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2473 AHA_2474 AHA_2474 AHA_2474 2743413 2749607 - nonribosomal peptide synthetase identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM TIGR01720%3B match to protein family HMM TIGR01733 gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2474 AHA_2475 AHA_2475 AHA_2475 2749724 2750473 - 2%2C3-dihydroxybenzoate-2%2C3-dehydrogenase catalyzes the formation of 2%2C3-dihydroxybenzoate from 2%2C3-dihydro-2%2C3-dihydroxybenzoate%3B involved in the biosynthesis of siderophores%2C enterobactin%2C bacillibactin or vibriobactin gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2475 AHA_2476 AHA_2476 AHA_2476 2750503 2753604 - nonribosomal peptide synthetase identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM TIGR01733 gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2476 AHA_2477 AHA_2477 AHA_2477 2753601 2754524 - isochorismatase identified by similarity to SP:P15048%3B match to protein family HMM PF00550%3B match to protein family HMM PF00857 gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2477 AHA_2478 AHA_2478 entE entE 2754548 2756209 - enterobactin synthase subunit E bifunctional 2%2C3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase%3B activates the carboxylate group of 2%2C3-dihydroxy-benzoate forming (2%2C3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2%2C3-dihydroxy-benzoate adenylate gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2478 AHA_2479 AHA_2479 AHA_2479 2756286 2757479 - isochorismate synthase identified by similarity to SP:P10377%3B match to protein family HMM PF00425%3B match to protein family HMM TIGR00543 gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2479 AHA_2480 AHA_2480 AHA_2480 2757805 2758356 + hypothetical protein identified by match to protein family HMM PF07273 gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2480 AHA_2481 AHA_2481 AHA_2481 2758502 2760502 + hypothetical protein identified by similarity to GB:CAG22906.1 gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2481 AHA_2482 AHA_2482 glgC-1 glgC-1 2760580 2761854 - glucose-1-phosphate adenylyltransferase identified by similarity to SP:P05415%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR02091 gene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2482 AHA_2483 AHA_2483 AHA_2483 2763646 2764140 - hypothetical protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2483 AHA_2484 AHA_2484 AHA_2484 2762043 2763683 + GGDEF/eal domain-containing protein identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990 gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2484 AHA_2485 AHA_2485 AHA_2485 2764309 2764671 - hypothetical protein identified by similarity to GB:BAC94307.1 gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2485 AHA_2486 AHA_2486 AHA_2486 2764858 2766162 - inosine-guanosine kinase identified by match to protein family HMM PF00294 gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2486 AHA_2487 AHA_2487 AHA_2487 2766342 2766734 - hypothetical protein gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2487 AHA_2488 AHA_2488 hemH hemH 2766807 2767832 - ferrochelatase protoheme ferro-lyase%3B catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme%3B involved in protoheme biosynthesis%3B in some organisms this protein is membrane-associated while in others it is cytosolic gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2488 AHA_2489 AHA_2489 adk adk 2767896 2768540 - adenylate kinase essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2489 AHA_2490 AHA_2490 htpG htpG 2768795 2770720 - heat shock protein 90 molecular chaperone gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2490 AHA_2491 AHA_2491 recR recR 2770954 2771556 - recombination protein RecR involved in a recombinational process of DNA repair%2C independent of the recBC complex gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2491 AHA_2492 AHA_2492 fdhD-2 fdhD-2 2771682 2772539 - formate dehydrogenase family accessory protein FdhD identified by match to protein family HMM PF02634%3B match to protein family HMM TIGR00129 gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2492 AHA_2493 AHA_2493 AHA_2493 2772551 2774680 - formate hydrogenlyase transcriptional activator identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954 gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2493 AHA_2494 AHA_2494 AHA_2494 2775035 2775433 - hypothetical protein gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2494 AHA_2495 AHA_2495 fdhA fdhA 2775515 2777659 - formate dehydrogenase subunit alpha Selenoprotein. identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01591 gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2495 AHA_2496 AHA_2496 AHA_2496 2777706 2778305 - (Fe-S)-binding protein identified by match to protein family HMM PF00037 gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2496 AHA_2497 AHA_2497 AHA_2497 2779070 2780818 + hypothetical protein gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2497 AHA_2498 AHA_2498 trkD trkD 2781291 2783159 + potassium transport protein Kup Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2498 AHA_2499 AHA_2499 hyfA hyfA 2783748 2784413 + hydrogenase-4 subunit A identified by match to protein family HMM PF00037 gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2499 AHA_2500 AHA_2500 AHA_2500 2784413 2786284 + hydrogenase 4 subunit B identified by match to protein family HMM PF00361 gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2500 AHA_2501 AHA_2501 AHA_2501 2786286 2787239 + hydrogenase-4 subunit C identified by match to protein family HMM PF00146 gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2501 AHA_2502 AHA_2502 AHA_2502 2787320 2789038 + hydrogenase-4 subunit G identified by match to protein family HMM PF00329%3B match to protein family HMM PF00346 gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2502 AHA_2503 AHA_2503 AHA_2503 2789048 2789605 + hydrogenase-4 component H identified by match to protein family HMM PF00037 gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2503 AHA_2504 AHA_2504 AHA_2504 2789605 2790420 + hydrogenase-4 subunit I identified by match to protein family HMM PF01058 gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2504 AHA_2505 AHA_2505 AHA_2505 2790413 2790826 + formate hydrogenlyase maturation protein HycH gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2505 AHA_2506 AHA_2506 hycI hycI 2790826 2791335 + hydrogenase 3 maturation protease involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2506 AHA_2507 AHA_2507 AHA_2507 2791529 2791616 + tRNA-Sec tRNA gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2507 AHA_2508 AHA_2508 selA selA 2791890 2793326 + selenocysteine synthase catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2508 AHA_2509 AHA_2509 selB selB 2793331 2795214 + selenocysteine-specific translation elongation factor identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00475 gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2509 AHA_2510 AHA_2510 hypF hypF 2795211 2797649 + [NiFe] hydrogenase maturation protein HypF identified by match to protein family HMM PF00708%3B match to protein family HMM PF01300%3B match to protein family HMM PF07503%3B match to protein family HMM TIGR00143 gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2510 AHA_2511 AHA_2511 hypC hypC 2797655 2797906 + hydrogenase assembly chaperone HypC/HupF identified by match to protein family HMM PF01455%3B match to protein family HMM TIGR00074 gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2511 AHA_2512 AHA_2512 hypD hypD 2797900 2799018 + hydrogenase expression/formation protein HypD identified by match to protein family HMM PF01924%3B match to protein family HMM TIGR00075 gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2512 AHA_2513 AHA_2513 hypE hypE 2799015 2800019 + hydrogenase expression/formation protein HypE identified by similarity to SP:P40595%3B match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR02124 gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2513 AHA_2514 AHA_2514 hypA hypA 2800089 2800430 + hydrogenase nickel incorporation protein HypA identified by match to protein family HMM PF01155%3B match to protein family HMM TIGR00100 gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2514 AHA_2515 AHA_2515 AHA_2515 2800432 2801523 + hydrogenase nickel incorporation protein HypB identified by match to protein family HMM PF02492%3B match to protein family HMM TIGR00073 gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2515 AHA_2516 AHA_2516 AHA_2516 2801859 2802500 - ATPase DppE identified by match to protein family HMM PF00005 gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2516 AHA_2517 AHA_2517 AHA_2517 2802500 2803288 - ABC nickel/di-oligopepetide transporter%2C ATP binding subunit identified by match to protein family HMM PF00005 gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2517 AHA_2518 AHA_2518 AHA_2518 2803392 2804204 - ABC nickel/di-oligopepetide transporter%2C permease subunit identified by match to protein family HMM PF00528 gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2518 AHA_2519 AHA_2519 AHA_2519 2804194 2805198 - ABC nickel/di-oligopepetide transporter%2C permease subunit identified by match to protein family HMM PF00528 gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2519 AHA_2520 AHA_2520 AHA_2520 2805183 2806814 - nickel/di-oligopepetide ABC transporter substrate-binding protein identified by match to protein family HMM PF00496 gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2520 AHA_2521 AHA_2521 AHA_2521 2806922 2807470 - hydrogenase 2-specific chaperone gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2521 AHA_2522 AHA_2522 hybD hybD 2807452 2807982 - hydrogenase 2 maturation endopeptidase protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC) gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2522 AHA_2523 AHA_2523 hybC hybC 2807982 2809685 - hydrogenase 2 large subunit involved in hydrogen uptake gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2523 AHA_2524 AHA_2524 AHA_2524 2809682 2810869 - hydrogenase 2 b cytochrome subunit HybB%3B cytochrome b subunit of the hydrogenase 2 enzyme%2C composed of HybA%2C B%2C C%2C and O subunits gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2524 AHA_2525 AHA_2525 AHA_2525 2810862 2811887 - hydrogenase 2 protein HybA Fe-S ferrodoxin type component%3B participates in the periplasmic electron-transferring activity of hydrogenase 2 gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2525 AHA_2526 AHA_2526 AHA_2526 2811890 2813023 - hydrogenase 2 small subunit involved in hydrogen uptake gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2526 AHA_2527 AHA_2527 AHA_2527 2813759 2814127 + hypothetical protein identified by match to protein family HMM PF00072 gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2527 AHA_2528 AHA_2528 AHA_2528 2814124 2814444 + anti-anti-sigma factor family protein identified by match to protein family HMM PF01740 gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2528 AHA_2529 AHA_2529 AHA_2529 2814431 2816587 + chemotaxis protein identified by match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895 gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2529 AHA_2530 AHA_2530 AHA_2530 2816631 2818307 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2530 AHA_2531 AHA_2531 cheW-3 cheW-3 2818317 2818844 + chemotaxis protein CheW identified by similarity to GB:AAB53941.1%3B match to protein family HMM PF01584 gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2531 AHA_2532 AHA_2532 cheR-2 cheR-2 2818847 2819710 + chemotaxis protein CheR identified by similarity to SP:P07364%3B match to protein family HMM PF01739%3B match to protein family HMM PF03705 gene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2532 AHA_2533 AHA_2533 cheB-3 cheB-3 2819707 2820783 + chemotaxis-specific methylesterase regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2533 AHA_2534 AHA_2534 AHA_2534 2820786 2821994 + response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00563 gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2534 AHA_2535 AHA_2535 AHA_2535 2822106 2823737 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2535 AHA_2536 AHA_2536 alr-2 alr-2 2824216 2825325 + alanine racemase identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492 gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2536 AHA_2537 AHA_2537 AHA_2537 2825475 2826170 - hypothetical protein identified by match to protein family HMM PF03483 gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2537 AHA_2538 AHA_2538 AHA_2538 2826214 2826816 + Cro/CI family transcriptional regulator identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883 gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2538 AHA_2539 AHA_2539 AHA_2539 2826979 2827066 - tRNA-Ser tRNA gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2539 AHA_2540 AHA_2540 AHA_2540 2827250 2829091 - sulfate transporter YchM role in sulfate transport across the inner membrane%3B member of the SulP family of sulfate transporters%3B seems to mediate transport via sulfate/proton symport gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2540 AHA_2541 AHA_2541 AHA_2541 2829543 2829618 + tRNA-Asn tRNA gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2541 AHA_2542 AHA_2542 AHA_2542 2829621 2829696 + tRNA-Asn tRNA gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2542 AHA_2543 AHA_2543 AHA_2543 2829840 2830325 + hypothetical protein identified by match to protein family HMM PF03350 gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2543 AHA_2544 AHA_2544 AHA_2544 2830443 2830892 + hypothetical protein gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2544 AHA_2545 AHA_2545 AHA_2545 2830975 2833866 + hypothetical protein gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2545 AHA_2546 AHA_2546 AHA_2546 2833866 2834684 + hypothetical protein identified by match to protein family HMM PF03239 gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2546 AHA_2547 AHA_2547 AHA_2547 2834709 2836205 + hypothetical protein identified by match to protein family HMM PF01593 gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2547 AHA_2548 AHA_2548 AHA_2548 2836353 2836913 + hypothetical protein gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2548 AHA_2549 AHA_2549 AHA_2549 2837093 2838376 + hypothetical protein gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2549 AHA_2550 AHA_2550 AHA_2550 2838428 2839618 + bicyclomycin resistance protein identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00710 gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2550 AHA_2551 AHA_2551 AHA_2551 2839716 2840183 - hypothetical protein gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2551 AHA_2552 AHA_2552 AHA_2552 2840204 2841016 + lipoprotein-releasing system ATP-binding protein LolD identified by match to protein family HMM PF00005 gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2552 AHA_2553 AHA_2553 AHA_2553 2841062 2843461 + adhesion component transport transmembrane protein identified by match to protein family HMM PF02687 gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2553 AHA_2554 AHA_2554 AHA_2554 2843458 2844642 + hypothetical protein gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2554 AHA_2555 AHA_2555 AHA_2555 2844744 2845688 - hypothetical protein gene gene2552 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2555 AHA_2556 AHA_2556 AHA_2556 2846931 2849723 - (Fe-S)-binding protein identified by match to protein family HMM PF00037%3B match to protein family HMM PF01565%3B match to protein family HMM PF02913 gene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2556 AHA_2557 AHA_2557 AHA_2557 2849723 2850367 - hypothetical protein identified by match to protein family HMM PF02589 gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2557 AHA_2558 AHA_2558 AHA_2558 2850369 2851805 - iron-sulfur cluster binding protein identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00273 gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2558 AHA_2559 AHA_2559 AHA_2559 2851798 2852589 - Fe-S oxidoreductase identified by match to protein family HMM PF02754 gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2559 AHA_2560 AHA_2560 AHA_2560 2852603 2854300 - lactate permease (LctP) family protein identified by similarity to SP:P33231%3B match to protein family HMM PF02652 gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2560 AHA_2561 AHA_2561 AHA_2561 2854361 2855338 + transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2561 AHA_2562 AHA_2562 AHA_2562 2855405 2855719 + arylsulfate sulfotransferase gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2562 AHA_2563 AHA_2563 AHA_2563 2855796 2856191 - lactoylglutathione lyase identified by match to protein family HMM PF00903 gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2563 AHA_2564 AHA_2564 AHA_2564 2856345 2857127 - acetoin cleaving system dihydrolipoyllysine-residue acetyltransferase identified by match to protein family HMM PF00561 gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2564 AHA_2565 AHA_2565 AHA_2565 2857234 2857590 + hypothetical protein identified by similarity to GB:CAB66213.1%3B match to protein family HMM PF04237 gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2565 AHA_2566 AHA_2566 AHA_2566 2857587 2858075 + acetyltransferase identified by match to protein family HMM PF00583 gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2566 AHA_2567 AHA_2567 AHA_2567 2858109 2858465 + hypothetical protein gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2567 AHA_2568 AHA_2568 msrA msrA 2858806 2859438 - methionine-S-sulfoxide reductase identified by match to protein family HMM PF01625%3B match to protein family HMM TIGR00401 gene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2568 AHA_2569 AHA_2569 argA argA 2859698 2861026 + N-acetylglutamate synthase catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2569 AHA_2570 AHA_2570 AHA_2570 2861448 2862800 + aspartate kinase catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B functions in amino acid biosynthesis%3B lysine sensitive gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2570 AHA_2571 AHA_2571 AHA_2571 2862895 2863983 - hypothetical protein gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2571 AHA_2572 AHA_2572 AHA_2572 2864238 2866499 + sulfatase identified by match to protein family HMM PF00884 gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2572 AHA_2573 AHA_2573 AHA_2573 2866589 2867602 - microcin immunity protein identified by match to protein family HMM PF02016 gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2573 AHA_2574 AHA_2574 AHA_2574 2867868 2868710 + alpha/beta hydrolase identified by match to protein family HMM PF01734 gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2574 AHA_2575 AHA_2575 AHA_2575 2868909 2869967 + anaerobic sulfite reductase subunit A identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR02910 gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2575 AHA_2576 AHA_2576 AHA_2576 2869969 2870808 + anaerobic sulfite reductase subunit B with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2576 AHA_2577 AHA_2577 AHA_2577 2870820 2871830 + anaerobic sulfite reductase subunit C identified by match to protein family HMM PF00037%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM TIGR02912 gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2577 AHA_2578 AHA_2578 AHA_2578 2872003 2873394 + siroheme synthase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470 gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2578 AHA_2579 AHA_2579 AHA_2579 2873483 2874085 - lipoprotein gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2579 AHA_2580 AHA_2580 AHA_2580 2874358 2874675 - hypothetical protein identified by match to protein family HMM PF01906 gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2580 AHA_2581 AHA_2581 AHA_2581 2874944 2876233 + hypothetical protein gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2581 AHA_2582 AHA_2582 AHA_2582 2876258 2877337 + hypothetical protein gene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2582 AHA_2583 AHA_2583 AHA_2583 2877383 2878183 + hypothetical protein gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2583 AHA_2584 AHA_2584 AHA_2584 2878289 2879581 - NADH dehydrogenase identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992 gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2584 AHA_2585 AHA_2585 AHA_2585 2879660 2880295 - hypothetical protein identified by match to protein family HMM PF05728 gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2585 AHA_2586 AHA_2586 AHA_2586 2880669 2882084 + xanthine permease identified by similarity to SP:P42086%3B match to protein family HMM PF00860%3B match to protein family HMM TIGR00801 gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2586 AHA_2587 AHA_2587 AHA_2587 2882137 2883945 - oligoendopeptidase F identified by match to protein family HMM PF01432 gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2587 AHA_2588 AHA_2588 AHA_2588 2884039 2885817 - oligoendopeptidase F identified by match to protein family HMM PF01432 gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2588 AHA_2589 AHA_2589 AHA_2589 2885999 2886916 - inner membrane protein YedI identified by match to protein family HMM PF05661 gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2589 AHA_2590 AHA_2590 AHA_2590 2887175 2887777 + hypothetical protein identified by match to protein family HMM PF06041 gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2590 AHA_2591 AHA_2591 secF-2 secF-2 2887842 2888849 - protein-export membrane protein SecF identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966 gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2591 AHA_2592 AHA_2592 secD-2 secD-2 2888869 2890722 - protein-export membrane protein SecD identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129 gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2592 AHA_2593 AHA_2593 AHA_2593 2890819 2891325 - hypothetical protein gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2593 AHA_2594 AHA_2594 AHA_2594 2891392 2892249 - hypothetical protein gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2594 AHA_2595 AHA_2595 AHA_2595 2892311 2892982 - hypothetical protein gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2595 AHA_2596 AHA_2596 AHA_2596 2893155 2893751 - hypothetical protein identified by match to protein family HMM TIGR02722 gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2596 AHA_2597 AHA_2597 AHA_2597 2893751 2894149 - hypothetical protein identified by match to protein family HMM PF07233 gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2597 AHA_2598 AHA_2598 AHA_2598 2894218 2895564 - hypothetical protein gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2598 AHA_2599 AHA_2599 AHA_2599 2895639 2895989 - HIT family hydrolase identified by match to protein family HMM PF01230 gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2599 AHA_2600 AHA_2600 AHA_2600 2896087 2898252 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2600 AHA_2601 AHA_2601 AHA_2601 2898328 2899146 - hypothetical protein gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2601 AHA_2602 AHA_2602 AHA_2602 2899292 2900635 + dihydroorotase Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2602 AHA_2603 AHA_2603 AHA_2603 2900868 2900944 + tRNA-Pro tRNA gene2600 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2603 AHA_2604 AHA_2604 AHA_2604 2901009 2901560 + hypothetical protein gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2604 AHA_2605 AHA_2605 AHA_2605 2901652 2903025 + proton/sodium-glutamate symport protein identified by match to protein family HMM PF00375 gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2605 AHA_2606 AHA_2606 AHA_2606 2903101 2903556 - hypothetical protein identified by similarity to GB:AAY91672.1 gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2606 AHA_2607 AHA_2607 alr alr 2903747 2904973 + alanine racemase converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2607 AHA_2608 AHA_2608 AHA_2608 2905030 2905974 - Alx protein identified by match to protein family HMM PF03741 gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2608 AHA_2609 AHA_2609 AHA_2609 2906268 2907263 - oligopeptide ABC transporter ATP-binding protein OppF identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2609 AHA_2610 AHA_2610 oppD oppD 2907264 2908244 - oligopeptide ABC transporter ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2610 AHA_2611 AHA_2611 AHA_2611 2908345 2909256 - oligopeptide ABC transporter permease OppC identified by match to protein family HMM PF00528 gene gene2608 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2611 AHA_2612 AHA_2612 oppB oppB 2909271 2910191 - oligopeptide transporter permease identified by match to protein family HMM PF00528 gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2612 AHA_2613 AHA_2613 AHA_2613 2910289 2911908 - oligopeptide ABC transporter periplasmic oligopeptide-binding protein identified by match to protein family HMM PF00496 gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2613 AHA_2614 AHA_2614 AHA_2614 2912188 2912862 - hypothetical protein identified by match to protein family HMM PF01914%3B match to protein family HMM TIGR00427 gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2614 AHA_2615 AHA_2615 AHA_2615 2912997 2913725 + hypothetical protein identified by similarity to GB:BAB74783.1 gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2615 AHA_2616 AHA_2616 AHA_2616 2914021 2916696 + bifunctional acetaldehyde-CoA/alcohol dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM PF00465 gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2616 AHA_2617 AHA_2617 AHA_2617 2916806 2918041 + HD domain-containing protein identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277 gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2617 AHA_2618 AHA_2618 AHA_2618 2918395 2920065 + sensor histidine kinase identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694 gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2618 AHA_2619 AHA_2619 AHA_2619 2920123 2920827 + two-component response-regulatory protein YehT unknown function%3B when overproduced it confers drug-resistance gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2619 AHA_2620 AHA_2620 AHA_2620 2920968 2922389 + CstA protein identified by match to protein family HMM PF02554 gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2620 AHA_2621 AHA_2621 AHA_2621 2922679 2923017 + inner membrane protein YiaW gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2621 AHA_2622 AHA_2622 AHA_2622 2923021 2924058 + HlyD family secretion protein identified by match to protein family HMM PF00529 gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2622 AHA_2623 AHA_2623 AHA_2623 2924173 2925933 + helicase%2C ATP-dependent identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851 gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2623 AHA_2624 AHA_2624 dacB dacB 2926065 2927501 + D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase identified by match to protein family HMM PF02113%3B match to protein family HMM TIGR00666 gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2624 AHA_2625 AHA_2625 grxA grxA 2927644 2927907 + glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase%3B also involved in reducing some disulfides in a coupled system with glutathione reductase gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2625 AHA_2626 AHA_2626 AHA_2626 2927966 2928319 - hypothetical protein identified by match to protein family HMM PF07866 gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2626 AHA_2627 AHA_2627 AHA_2627 2928558 2929772 + aminotransferase broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2627 AHA_2628 AHA_2628 AHA_2628 2929838 2931313 - arginine/ornithine antiporter identified by match to protein family HMM PF03606 gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2628 AHA_2629 AHA_2629 AHA_2629 2931477 2932670 - trans-2-enoyl-CoA reductase enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2629 AHA_2630 AHA_2630 AHA_2630 2932995 2934293 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229 gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2630 AHA_2631 AHA_2631 AHA_2631 2934354 2934551 - hypothetical protein gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2631 AHA_2632 AHA_2632 AHA_2632 2934330 2934536 + hypothetical protein gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2632 AHA_2633 AHA_2633 AHA_2633 2934602 2935642 - hypothetical protein identified by match to protein family HMM PF00892 gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2633 AHA_2634 AHA_2634 rnfA rnfA 2935611 2936192 + Na(+)-translocating NADH-quinone reductase subunit E identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01943 gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2634 AHA_2635 AHA_2635 rnfB rnfB 2936197 2936760 + electron transport complex protein RnfB part of membrane-bound complex thought to be involved in electron transport to nitrogen gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2635 AHA_2636 AHA_2636 rnfC rnfC 2936767 2939322 + RnfABCDGE type electron transport complex subunit C identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512%3B match to protein family HMM TIGR01945 gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2636 AHA_2637 AHA_2637 rnfD rnfD 2939326 2940378 + electron transport complex protein RnfD RnfD%3B RsxD%3B required for nitrogen fixation in Rhodobacter capsulatus%3B part of a membrane-bound complex thought to be involved in electron transport to nitrogenase%3B in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2637 AHA_2638 AHA_2638 rnfG rnfG 2940413 2941045 + RnfABCDGE type electron transport complex subunit G identified by match to protein family HMM PF04205%3B match to protein family HMM TIGR01947 gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2638 AHA_2639 AHA_2639 rnfE rnfE 2941077 2941820 + RnfABCDGE type electron transport complex subunit E identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01948 gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2639 AHA_2640 AHA_2640 nth nth 2941835 2942476 + endonuclease III identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01083 gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2640 AHA_2641 AHA_2641 gloA gloA 2942609 2943022 + lactoylglutathione lyase identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR00068 gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2641 AHA_2642 AHA_2642 AHA_2642 2943087 2943950 - sodium-type flagellar protein MotY identified by match to protein family HMM PF00691 gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2642 AHA_2643 AHA_2643 AHA_2643 2944031 2945812 - methyl-accepting chemotaxis transducer identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2643 AHA_2644 AHA_2644 rnt rnt 2946090 2946812 + ribonuclease T Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2644 AHA_2645 AHA_2645 AHA_2645 2947060 2948382 + gluconate:H+ symporter (GntP) family protein identified by match to protein family HMM PF03553%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808 gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2645 AHA_2646 AHA_2646 AHA_2646 2948749 2950677 - ATP-dependent RNA helicase identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880 gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2646 AHA_2647 AHA_2647 AHA_2647 2950825 2951286 - esterase YdiI identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00369 gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2647 AHA_2648 AHA_2648 AHA_2648 2951413 2951901 - hypothetical protein gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2648 AHA_2649 AHA_2649 AHA_2649 2951901 2955056 - FAD linked oxidase identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913 gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2649 AHA_2650 AHA_2650 AHA_2650 2955130 2956056 + hypothetical protein identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2650 AHA_2651 AHA_2651 AHA_2651 2956369 2957904 + inner membrane protein YoaE identified by match to protein family HMM PF00571%3B match to protein family HMM PF03471%3B match to protein family HMM PF03741 gene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2651 AHA_2652 AHA_2652 AHA_2652 2958093 2959214 + morphinone reductase identified by match to protein family HMM PF00724 gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2652 AHA_2653 AHA_2653 add-2 add-2 2959303 2960322 - adenosine deaminase identified by match to protein family HMM PF00962%3B match to protein family HMM TIGR01430 gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2653 AHA_2654 AHA_2654 AHA_2654 2960537 2961286 + UMP phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01460 gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2654 AHA_2655 AHA_2655 AHA_2655 2961356 2962930 + glutathione-regulated potassium-efflux system protein KefC identified by match to protein family HMM PF00999%3B match to protein family HMM PF02254 gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2655 AHA_2656 AHA_2656 AHA_2656 2963056 2963424 + transcriptional regulator identified by match to protein family HMM PF05899 gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2656 AHA_2657 AHA_2657 asnB asnB 2963618 2965282 + asparagine synthetase B functions in asparagine biosynthesis%3B converts glutamine%2C aspartate%2C ATP%2C and water to glutamate%2C asparagine%2C pyrophosphate and AMP gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2657 AHA_2658 AHA_2658 AHA_2658 2965462 2965962 + hypothetical protein gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2658 AHA_2659 AHA_2659 AHA_2659 2966084 2966707 + glutathione S-transferase identified by match to protein family HMM PF02798 gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2659 AHA_2660 AHA_2660 maiA maiA 2966786 2967487 - maleylacetoacetate isomerase identified by match to protein family HMM PF02798%3B match to protein family HMM TIGR01262 gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2660 AHA_2661 AHA_2661 AHA_2661 2967497 2968495 - fumarylacetoacetate hydrolase family protein identified by match to protein family HMM PF01557 gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2661 AHA_2662 AHA_2662 hmgA hmgA 2968507 2969667 - homogentisate 1%2C2-dioxygenase identified by match to protein family HMM PF04209 gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2662 AHA_2663 AHA_2663 hppD hppD 2969715 2970812 - 4-hydroxyphenylpyruvate dioxygenase identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR01263 gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2663 AHA_2664 AHA_2664 AHA_2664 2971050 2971718 - hypothetical protein gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2664 AHA_2665 AHA_2665 AHA_2665 2971715 2972374 - pseudouridine synthase identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR01621 gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2665 AHA_2666 AHA_2666 AHA_2666 2972461 2974044 + diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2666 AHA_2667 AHA_2667 AHA_2667 2974110 2975663 - aerotaxis receptor Aer identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229 gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2667 AHA_2668 AHA_2668 AHA_2668 2975821 2976507 - virulence protein gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2668 AHA_2669 AHA_2669 AHA_2669 2976517 2979066 - hypothetical protein identified by match to protein family HMM PF04329%3B match to protein family HMM PF04330%3B match to protein family HMM PF04331 gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2669 AHA_2670 AHA_2670 AHA_2670 2979544 2981169 - sulfatase identified by match to protein family HMM PF00884%3B match to protein family HMM PF08019 gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2670 AHA_2671 AHA_2671 AHA_2671 2981550 2982329 + hypothetical protein identified by match to protein family HMM PF03988 gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2671 AHA_2672 AHA_2672 AHA_2672 2982415 2983629 + major facilitator transporter identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690 gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2672 AHA_2673 AHA_2673 AHA_2673 2983700 2983787 - tRNA-Ser tRNA gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2673 AHA_2674 AHA_2674 AHA_2674 2983971 2984627 + hypothetical protein identified by match to protein family HMM PF01027 gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2674 AHA_2675 AHA_2675 AHA_2675 2984791 2986944 + hypothetical protein identified by match to protein family HMM PF05976%3B match to protein family HMM TIGR01666%3B match to protein family HMM TIGR01667 gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2675 AHA_2676 AHA_2676 AHA_2676 2986965 2987309 + dissimilatory sulfite reductase subunit gamma identified by match to protein family HMM PF04358 gene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2676 AHA_2677 AHA_2677 AHA_2677 2987367 2988167 - protein DedD identified by match to protein family HMM PF05036 gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2677 AHA_2678 AHA_2678 folC folC 2988242 2989489 - bifunctional folylpolyglutamate synthase/ dihydrofolate synthase identified by similarity to SP:P08192%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01499 gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2678 AHA_2679 AHA_2679 accD accD 2989504 2990367 - acetyl-CoA carboxylase%2C carboxyl transferase subunit beta identified by match to protein family HMM TIGR00515 gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2679 AHA_2680 AHA_2680 truA truA 2990487 2991296 - tRNA pseudouridine synthase A mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2680 AHA_2681 AHA_2681 AHA_2681 2991476 2993674 - motility protein FimV gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2681 AHA_2682 AHA_2682 asd-2 asd-2 2993950 2994966 - aspartate-semialdehyde dehydrogenase identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01296 gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2682 AHA_2683 AHA_2683 AHA_2683 2995109 2996239 - erythronate-4-phosphate dehydrogenase identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2683 AHA_2684 AHA_2684 AHA_2684 2996562 2997308 + phosphatidylglycerophosphatase B identified by match to protein family HMM PF01569 gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2684 AHA_2685 AHA_2685 AHA_2685 2997380 2998210 - outer membrane lipoprotein identified by match to protein family HMM PF03180 gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2685 AHA_2686 AHA_2686 AHA_2686 2998447 2998986 + isochorismatase family protein identified by match to protein family HMM PF00857 gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2686 AHA_2687 AHA_2687 AHA_2687 2999464 3001338 + serine proteinase identified by match to protein family HMM PF00082%3B match to protein family HMM PF01483 gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2687 AHA_2688 AHA_2688 AHA_2688 3001356 3001814 + hypothetical protein gene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2688 AHA_2689 AHA_2689 AHA_2689 3001952 3004618 + beta-glucosidase identified by match to protein family HMM PF00933%3B match to protein family HMM PF01915 gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2689 AHA_2690 AHA_2690 AHA_2690 3004713 3006098 - AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2690 AHA_2691 AHA_2691 ppsA ppsA 3005995 3008367 - phosphoenolpyruvate synthase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2691 AHA_2692 AHA_2692 AHA_2692 3008682 3009494 + hypothetical protein identified by similarity to SP:Q8EDU8%3B match to protein family HMM PF03618 gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2692 AHA_2693 AHA_2693 AHA_2693 3009584 3009871 - hypothetical protein gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2693 AHA_2694 AHA_2694 AHA_2694 3010234 3011610 + aromatic amino acid transport protein AroP identified by match to protein family HMM PF00324 gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2694 AHA_2695 AHA_2695 AHA_2695 3011858 3012577 - hypothetical protein identified by match to protein family HMM PF04402 gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2695 AHA_2696 AHA_2696 AHA_2696 3012619 3013176 - hypothetical protein gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2696 AHA_2697 AHA_2697 AHA_2697 3013263 3026045 - structural toxin protein RtxA identified by similarity to GB:CAH14915.1%3B match to protein family HMM PF00092%3B match to protein family HMM PF00353 gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2697 AHA_2698 AHA_2698 AHA_2698 3026202 3028127 - diguanylate cyclase/phosphodiesterase identified by match to protein family HMM PF00563%3B match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2698 AHA_2699 AHA_2699 AHA_2699 3029012 3030340 - agglutination protein identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01844 gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2699 AHA_2700 AHA_2700 AHA_2700 3030376 3031794 - HlyD family secretion protein identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01843 gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2700 AHA_2701 AHA_2701 AHA_2701 3031787 3033931 - toxin secretion ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2701 AHA_2702 AHA_2702 AHA_2702 3034335 3035270 - radical SAM protein identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR01212 gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2702 AHA_2703 AHA_2703 gltB gltB 3035884 3040341 + glutamate synthase subunit alpha catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2703 AHA_2704 AHA_2704 gltD gltD 3040354 3041769 + glutamate synthase subunit beta glutamate synthase is composed of subunits alpha and beta%3B beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase%3B provides electrons to the alpha subunit%2C which binds L-glutamine and 2-oxoglutarate and forms L-glutamate gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2704 AHA_2705 AHA_2705 AHA_2705 3041856 3042617 - amino acid ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005 gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2705 AHA_2706 AHA_2706 AHA_2706 3042614 3043291 - L-cystine ABC transporter permease identified by similarity to SP:P42200%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2706 AHA_2707 AHA_2707 AHA_2707 3043328 3044101 - amino acid ABC transporter substrate-binding protein identified by match to protein family HMM PF00497 gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2707 AHA_2708 AHA_2708 AHA_2708 3044369 3044779 - hypothetical protein gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2708 AHA_2709 AHA_2709 AHA_2709 3044789 3045367 - O-methyltransferase identified by match to protein family HMM PF01596 gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2709 AHA_2710 AHA_2710 soxR soxR 3045436 3045903 - redox-sensitive transcriptional activator SoxR identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR01950 gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2710 AHA_2711 AHA_2711 AHA_2711 3045976 3046968 + hypothetical protein gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2711 AHA_2712 AHA_2712 AHA_2712 3046988 3047419 - extracellular protease gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2712 AHA_2713 AHA_2713 AHA_2713 3047487 3048527 - extracellular protease identified by match to protein family HMM PF02102 gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2713 AHA_2714 AHA_2714 AHA_2714 3048800 3049438 - hypothetical protein gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2714 AHA_2715 AHA_2715 AHA_2715 3049538 3050764 - ATP-dependent RNA helicase RhlE identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2715 AHA_2716 AHA_2716 AHA_2716 3051085 3051618 - spermidine N1-acetyltransferase identified by match to protein family HMM PF00583 gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2716 AHA_2717 AHA_2717 AHA_2717 3051718 3052368 - inner membrane protein YqjA gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2717 AHA_2718 AHA_2718 AHA_2718 3052599 3054182 - CHASE4 domain-contain protein identified by match to protein family HMM PF00672%3B match to protein family HMM PF01590%3B match to protein family HMM PF05228 gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2718 AHA_2719 AHA_2719 AHA_2719 3054404 3055360 + hypothetical protein gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2719 AHA_2720 AHA_2720 AHA_2720 3055495 3056451 + DNA-binding protein identified by match to protein family HMM PF01396 gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2720 AHA_2721 AHA_2721 AHA_2721 3057209 3058462 - hypothetical protein identified by match to protein family HMM PF07759 gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2721 AHA_2722 AHA_2722 leuA-2 leuA-2 3058555 3060213 - 2-isopropylmalate synthase identified by match to protein family HMM PF00682%3B match to protein family HMM TIGR00970 gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2722 AHA_2723 AHA_2723 carB carB 3060699 3063935 - carbamoyl phosphate synthase large subunit four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2723 AHA_2724 AHA_2724 carA carA 3063952 3065088 - carbamoyl-phosphate synthase small subunit identified by match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368 gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2724 AHA_2725 AHA_2725 dapB dapB 3065777 3066589 - dihydrodipicolinate reductase catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2725 AHA_2726 AHA_2726 AHA_2726 3066900 3068234 + Na+/H+ antiporter family protein identified by match to protein family HMM PF03553 gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2726 AHA_2727 AHA_2727 AHA_2727 3068367 3068966 + 5%2C10-methenyltetrahydrofolate synthetase identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727 gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2727 AHA_2728 AHA_2728 rpiA rpiA 3069152 3069805 + ribose-5-phosphate isomerase A Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2728 AHA_2729 AHA_2729 AHA_2729 3069808 3069927 + ribose-5-phosphate isomerase A gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2729 AHA_2730 AHA_2730 AHA_2730 3069896 3070048 + ribose-5-phosphate isomerase A gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2730 AHA_2731 AHA_2731 AHA_2731 3070152 3071489 + D-3-phosphoglycerate dehydrogenase catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2731 AHA_2732 AHA_2732 dgkA dgkA 3071696 3072076 - diacylglycerol kinase identified by match to protein family HMM PF01219 gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2732 AHA_2733 AHA_2733 AHA_2733 3072232 3073296 + phospho-2-dehydro-3-deoxyheptonate aldolase tryptophan sensitive%3B catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2733 AHA_2734 AHA_2734 AHA_2734 3073303 3073761 + aminoglycoside 6'-N-acetyltransferase Iz identified by match to protein family HMM PF00583 gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2734 AHA_2735 AHA_2735 AHA_2735 3073783 3074532 - vitamin B12 import ATP-binding protein BtuD identified by match to protein family HMM PF00005 gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2735 AHA_2736 AHA_2736 AHA_2736 3074555 3075562 - vtamin B12-transporter permease with BtuD and BtuF transports vitamin B12 into the cell gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2736 AHA_2737 AHA_2737 AHA_2737 3075663 3076394 - extracellular solute-binding protein gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2737 AHA_2738 AHA_2738 AHA_2738 3076508 3076864 + transmembrane signal peptide protein identified by match to protein family HMM PF04342 gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2738 AHA_2739 AHA_2739 AHA_2739 3076925 3078064 + pilus retraction protein PilT identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2739 AHA_2740 AHA_2740 glgC-2 glgC-2 3078348 3079619 + glucose-1-phosphate adenylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02091 gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2740 AHA_2741 AHA_2741 AHA_2741 3079686 3080234 + hypothetical protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2741 AHA_2742 AHA_2742 AHA_2742 3080349 3080591 - LuxR family transcriptional regulator gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2742 AHA_2743 AHA_2743 feoB feoB 3080588 3082861 - ferrous iron transport protein B identified by match to protein family HMM PF01926%3B match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00437 gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2743 AHA_2744 AHA_2744 AHA_2744 3082917 3083144 - hypothetical protein identified by match to protein family HMM PF04023 gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2744 AHA_2745 AHA_2745 yciH yciH 3083219 3083593 + translation initation factor SUI1 identified by match to protein family HMM PF01253 gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2745 AHA_2746 AHA_2746 AHA_2746 3083850 3084407 + integral membrane protein identified by match to protein family HMM PF01169 gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2746 AHA_2747 AHA_2747 AHA_2747 3084439 3085548 + hypothetical protein gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2747 AHA_2748 AHA_2748 AHA_2748 3085541 3086548 + hypothetical protein gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2748 AHA_2749 AHA_2749 AHA_2749 3086545 3087042 + hypothetical protein gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2749 AHA_2750 AHA_2750 AHA_2750 3087116 3087862 + hypothetical protein gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2750 AHA_2751 AHA_2751 AHA_2751 3087964 3088710 + hypothetical protein gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2751 AHA_2752 AHA_2752 AHA_2752 3088772 3089785 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM TIGR00254 gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2752 AHA_2753 AHA_2753 AHA_2753 3090472 3090780 - hypothetical protein gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2753 AHA_2754 AHA_2754 AHA_2754 3092623 3094152 + HD domain-containing protein identified by match to protein family HMM PF01966 gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2754 AHA_2755 AHA_2755 AHA_2755 3094521 3094703 - hypothetical protein gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2755 AHA_2756 AHA_2756 cysS cysS 3094830 3096206 - cysteinyl-tRNA synthetase identified by match to protein family HMM PF01406%3B match to protein family HMM TIGR00435 gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2756 AHA_2757 AHA_2757 ppiB ppiB 3096397 3096894 + peptidyl-prolyl cis-trans isomerase B identified by similarity to SP:P23869%3B match to protein family HMM PF00160 gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2757 AHA_2758 AHA_2758 AHA_2758 3096884 3097579 + HIT family protein gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2758 AHA_2759 AHA_2759 lpxH lpxH 3097576 3098301 + UDP-2%2C3-diacylglucosamine hydrolase identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR01854 gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2759 AHA_2760 AHA_2760 AHA_2760 3098388 3099341 - protein NrfD identified by match to protein family HMM PF03916 gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2760 AHA_2761 AHA_2761 AHA_2761 3099390 3100058 - 4Fe-4S ferredoxin identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01409 gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2761 AHA_2762 AHA_2762 AHA_2762 3100055 3100684 - formate-dependent nitrite reductase gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2762 AHA_2763 AHA_2763 AHA_2763 3100834 3101445 - cytochrome c553 identified by match to protein family HMM PF00034 gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2763 AHA_2764 AHA_2764 AHA_2764 3101576 3103807 + deCa-heme c-type cytochrome gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2764 AHA_2765 AHA_2765 AHA_2765 3103864 3104835 + nitrate/TMAO reductase identified by match to protein family HMM TIGR01905 gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2765 AHA_2766 AHA_2766 AHA_2766 3104847 3106838 + outer membrane protein gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2766 AHA_2767 AHA_2767 AHA_2767 3106994 3109075 - chemotaxis transducer identified by match to protein family HMM PF00015%3B match to protein family HMM PF07238 gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2767 AHA_2768 AHA_2768 AHA_2768 3109630 3110919 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM TIGR00229 gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2768 AHA_2769 AHA_2769 AHA_2769 3111150 3111236 - tRNA-Leu tRNA gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2769 AHA_2770 AHA_2770 AHA_2770 3111278 3111351 - tRNA-Cys tRNA gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2770 AHA_2771 AHA_2771 AHA_2771 3111386 3111461 - tRNA-Gly tRNA gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2771 AHA_2772 AHA_2772 pgsA pgsA 3111643 3112197 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560 gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2772 AHA_2773 AHA_2773 uvrC uvrC 3112501 3114351 - excinuclease ABC subunit C identified by match to protein family HMM PF00633%3B match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00194 gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2773 AHA_2774 AHA_2774 uvrY uvrY 3114540 3115184 - response regulator in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system%3B in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2774 AHA_2775 AHA_2775 kdsB kdsB 3115397 3116158 - 3-deoxy-D-manno-octulosonate cytidylyltransferase identified by match to protein family HMM PF02348%3B match to protein family HMM TIGR00466 gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2775 AHA_2776 AHA_2776 AHA_2776 3116155 3116343 - hypothetical protein identified by match to protein family HMM PF03966 gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2776 AHA_2777 AHA_2777 lpxK lpxK 3116465 3117466 - tetraacyldisaccharide 4'-kinase transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4'-bis-phosphate gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2777 AHA_2778 AHA_2778 msbA msbA 3117466 3119235 - lipid A export permease/ATP-binding protein MsbA identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR02203 gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2778 AHA_2779 AHA_2779 AHA_2779 3119468 3121753 - DNA internalization-related competence protein ComEC/Rec2 identified by match to protein family HMM PF00753%3B match to protein family HMM PF03772%3B match to protein family HMM TIGR00360%3B match to protein family HMM TIGR00361 gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2779 AHA_2780 AHA_2780 AHA_2780 3121697 3122215 + flagellar biosynthesis protein FlhF gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2780 AHA_2781 AHA_2781 AHA_2781 3122209 3122703 + hypothetical protein gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2781 AHA_2782 AHA_2782 AHA_2782 3122826 3124334 + hypothetical protein identified by similarity to GB:CAI07148.1%3B match to protein family HMM PF05872 gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2782 AHA_2783 AHA_2783 aspC aspC 3124412 3125602 - aromatic amino acid aminotransferase catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2783 AHA_2784 AHA_2784 AHA_2784 3125778 3126653 - hypothetical protein gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2784 AHA_2785 AHA_2785 AHA_2785 3126950 3128017 - outer membrane protein identified by match to protein family HMM PF00267 gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2785 AHA_2786 AHA_2786 dinG dinG 3128351 3130471 + ATP-dependent DNA helicase DinG helicase involved in DNA repair and perhaps also replication gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2786 AHA_2787 AHA_2787 AHA_2787 3130645 3131304 + hypothetical protein gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2787 AHA_2788 AHA_2788 AHA_2788 3131326 3132285 + histone deacetylase/AcuC/AphA family protein identified by match to protein family HMM PF00850 gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2788 AHA_2789 AHA_2789 AHA_2789 3132464 3133612 - MFS family transporter protein identified by match to protein family HMM PF07690 gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2789 AHA_2790 AHA_2790 rbgA rbgA 3133985 3134935 - ribosomal biogenesis GTPase essential GTPase%3B functions in ribosome assembly%3B binds a unique part of the 23S rRNA%3B interacts with ribosomal protein L25(Ctc) gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2790 AHA_2791 AHA_2791 AHA_2791 3135268 3136659 + alkaline phosphatase%2C placental type identified by match to protein family HMM PF00245 gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2791 AHA_2792 AHA_2792 AHA_2792 3136671 3138077 + alkaline phosphatase%2C tissue-nonspecific isozyme identified by match to protein family HMM PF00245 gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2792 AHA_2793 AHA_2793 AHA_2793 3138128 3138811 + hypothetical protein gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2793 AHA_2794 AHA_2794 AHA_2794 3138865 3139623 + hypothetical protein gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2794 AHA_2795 AHA_2795 rnk rnk 3139856 3140251 + regulator of nucleoside diphosphate kinase identified by match to protein family HMM PF01272 gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2795 AHA_2796 AHA_2796 AHA_2796 3140441 3141031 + DNA-binding transcriptional activator UhpA response regulator in two-component regulatory system wtih UhpB%3B phosphorylated UhpA is a positive activator uhpT%2C a hexose phosphates transporter gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2796 AHA_2797 AHA_2797 uhpB uhpB 3141028 3142548 + sensory histidine kinase UhpB Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2797 AHA_2798 AHA_2798 AHA_2798 3142576 3143904 + regulatory protein UhpC membrane protein regulates uhpT expression gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2798 AHA_2799 AHA_2799 AHA_2799 3143909 3145048 - diguanylate cyclase/phosphodiesterase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2799 AHA_2800 AHA_2800 AHA_2800 3145487 3146338 + amino acid ABC transporter substrate-binding protein identified by match to protein family HMM PF00497 gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2800 AHA_2801 AHA_2801 AHA_2801 3146408 3147388 + amino acid ABC transporter permease identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2801 AHA_2802 AHA_2802 AHA_2802 3147372 3148115 + glutamate transport ATP-binding protein GluA identified by match to protein family HMM PF00005 gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2802 AHA_2803 AHA_2803 AHA_2803 3148187 3148636 - hypothetical protein gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2803 AHA_2804 AHA_2804 AHA_2804 3148887 3149654 - amino acid ABC transporter substrate-binding protein gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2804 AHA_2805 AHA_2805 AHA_2805 3149812 3150723 + C-5 sterol desaturase gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2805 AHA_2806 AHA_2806 AHA_2806 3150810 3152210 - arginine/ornithine antiporter identified by match to protein family HMM PF00324 gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2806 AHA_2807 AHA_2807 AHA_2807 3152220 3153122 - homocysteine S-methyltransferase identified by match to protein family HMM PF02574 gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2807 AHA_2808 AHA_2808 AHA_2808 3153392 3153928 - hypothetical protein gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2808 AHA_2809 AHA_2809 AHA_2809 3153954 3155273 - transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2809 AHA_2810 AHA_2810 phoU phoU 3155466 3156176 - transcriptional regulator PhoU regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2810 AHA_2811 AHA_2811 pstB pstB 3156287 3157105 - phosphate ABC transporter ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972 gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2811 AHA_2812 AHA_2812 AHA_2812 3157215 3158864 - transmembrane component of the phosphate specific transport complex identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974 gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2812 AHA_2813 AHA_2813 pstC pstC 3158897 3161134 - phosphate ABC transporter permease part of the evidence for the annotation of this gene is based on the presence of the gene in a cluster with related functions%3B identified by match to protein family HMM PF00528 gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2813 AHA_2814 AHA_2814 AHA_2814 3161341 3161880 - tRNA-specific adenosine deaminase identified by match to protein family HMM PF00383 gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2814 AHA_2815 AHA_2815 AHA_2815 3162154 3162230 + tRNA-Pro tRNA gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2815 AHA_2816 AHA_2816 aceB aceB 3163381 3164988 + malate synthase Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2816 AHA_2817 AHA_2817 aceA aceA 3165064 3166377 + isocitrate lyase identified by match to protein family HMM PF00463%3B match to protein family HMM TIGR01346 gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2817 AHA_2818 AHA_2818 dnaA-2 dnaA-2 3166627 3167424 - chromosomal replication initiator protein DnaA identified by match to protein family HMM PF00308 gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2818 AHA_2819 AHA_2819 AHA_2819 3167544 3168572 - hypothetical protein gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2819 AHA_2820 AHA_2820 upp upp 3168716 3169342 - uracil phosphoribosyltransferase Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2820 AHA_2821 AHA_2821 purM purM 3169518 3170555 + phosphoribosylaminoimidazole synthetase catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2821 AHA_2822 AHA_2822 purN purN 3170576 3171226 + phosphoribosylglycinamide formyltransferase glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2822 AHA_2823 AHA_2823 AHA_2823 3171345 3172106 - hypothetical protein identified by match to protein family HMM PF01784%3B match to protein family HMM TIGR00486 gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2823 AHA_2824 AHA_2824 AHA_2824 3172254 3173597 - transcriptional activator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2824 AHA_2825 AHA_2825 AHA_2825 3173659 3174693 - two-component sensor kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2825 AHA_2826 AHA_2826 AHA_2826 3174800 3176218 - FleQ protein identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2826 AHA_2827 AHA_2827 AHA_2827 3176500 3177336 - topoisomerase DNA binding C4 zinc finger domain-containing protein identified by match to protein family HMM PF01396 gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2827 AHA_2828 AHA_2828 AHA_2828 3177296 3178093 + ACT domain-containing protein identified by match to protein family HMM PF01842 gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2828 AHA_2829 AHA_2829 ppk ppk 3178169 3180238 + polyphosphate kinase identified by match to protein family HMM PF02503 gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2829 AHA_2830 AHA_2830 AHA_2830 3180228 3181718 + exopolyphosphatase identified by match to protein family HMM PF02541 gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2830 AHA_2831 AHA_2831 mgtE-1 mgtE-1 3181783 3183126 - magnesium transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM TIGR00400 gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2831 AHA_2832 AHA_2832 flgL flgL 3183631 3184839 - flagellar hook-associated protein FlgL with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2832 AHA_2833 AHA_2833 flgK flgK 3184844 3186844 - flagellar hook-associated protein FlgK identified by similarity to GB:AAN08646.1%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02492 gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2833 AHA_2834 AHA_2834 flgJ flgJ 3186848 3187897 - flagellar rod assembly protein/muramidase FlgJ identified by similarity to GB:AAN08645.1%3B match to protein family HMM PF01832%3B match to protein family HMM TIGR02541 gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2834 AHA_2835 AHA_2835 flgI flgI 3187984 3189081 - flagellar basal body P-ring protein part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2835 AHA_2836 AHA_2836 flgH flgH 3189090 3189761 - flagellar basal body L-ring protein part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2836 AHA_2837 AHA_2837 flgG flgG 3189776 3190564 - flagellar basal body rod protein FlgG makes up the distal portion of the flagellar basal body rod gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2837 AHA_2838 AHA_2838 flgF flgF 3190579 3191325 - flagellar basal-body rod protein FlgF identified by similarity to GB:AAN08641.1%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02490 gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2838 AHA_2839 AHA_2839 flgE flgE 3191461 3192795 - flagellar hook protein FlgE the hook connects flagellar basal body to the flagellar filament gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2839 AHA_2840 AHA_2840 flgD flgD 3192806 3193534 - flagellar hook capping protein identified by similarity to GB:AAN08639.1%3B match to protein family HMM PF03963 gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2840 AHA_2841 AHA_2841 flgC flgC 3193550 3193969 - flagellar basal body rod protein FlgC with FlgF and B makes up the proximal portion of the flagellar basal body rod gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2841 AHA_2842 AHA_2842 flgB flgB 3193969 3194367 - flagellar basal-body rod protein FlgB identified by similarity to GB:AAN08637.1%3B match to protein family HMM PF00460%3B match to protein family HMM TIGR01396 gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2842 AHA_2843 AHA_2843 cheR-3 cheR-3 3194431 3195255 - chemotaxis protein CheR identified by match to protein family HMM PF01739%3B match to protein family HMM PF03705 gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2843 AHA_2844 AHA_2844 AHA_2844 3195274 3196185 - CheV identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584 gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2844 AHA_2845 AHA_2845 flgA flgA 3196156 3197013 + flagella basal body P-ring formation protein FlgA identified by similarity to GB:AAN08634.1%3B match to protein family HMM PF03240 gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2845 AHA_2846 AHA_2846 flgM flgM 3197104 3197424 + anti-sigma-D factor identified by similarity to GB:AAN08633.1%3B match to protein family HMM PF04316 gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2846 AHA_2847 AHA_2847 flgN flgN 3197424 3197837 + flagellar protein FlgN identified by match to protein family HMM PF05130 gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2847 AHA_2848 AHA_2848 AHA_2848 3197895 3198437 - phosphodiesterase identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00040 gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2848 AHA_2849 AHA_2849 AHA_2849 3198448 3200211 - periplasmic murein peptide-binding protein identified by match to protein family HMM PF00496 gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2849 AHA_2850 AHA_2850 AHA_2850 3200311 3201216 + drug/metabolite exporter family protein identified by match to protein family HMM PF00892 gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2850 AHA_2851 AHA_2851 AHA_2851 3201228 3201920 - ribosomal small subunit pseudouridine synthase A identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2851 AHA_2852 AHA_2852 AHA_2852 3203288 3203476 - hypothetical protein gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2852 AHA_2853 AHA_2853 AHA_2853 3202095 3203291 + HD domain-containing protein identified by match to protein family HMM PF01966 gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2853 AHA_2854 AHA_2854 AHA_2854 3203576 3204226 - fructose-6-phosphate aldolase similar to transaldolase from Escherichia coli%3B many organisms have multiple copies gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2854 AHA_2855 AHA_2855 AHA_2855 3204355 3205251 + pyruvate formate-lyase 2-activating enzyme identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR02494 gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2855 AHA_2856 AHA_2856 AHA_2856 3205304 3207736 + pyruvate formate-lyase identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901%3B match to protein family HMM TIGR01774 gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2856 AHA_2857 AHA_2857 AHA_2857 3207829 3208575 + HTH-type transcriptional regulator YciT identified by match to protein family HMM PF00455%3B match to protein family HMM PF01022%3B match to protein family HMM PF08220 gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2857 AHA_2858 AHA_2858 AHA_2858 3208505 3209596 + drug/metabolite exporter family transporter identified by match to protein family HMM PF00892 gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2858 AHA_2859 AHA_2859 AHA_2859 3209718 3211568 + oligopeptide ABC transporter periplasmic protein identified by match to protein family HMM PF00496 gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2859 AHA_2860 AHA_2860 AHA_2860 3211665 3212057 - hypothetical protein gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2860 AHA_2861 AHA_2861 AHA_2861 3212151 3212708 - hypothetical protein gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2861 AHA_2862 AHA_2862 AHA_2862 3213194 3213574 - hypothetical protein gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2862 AHA_2863 AHA_2863 AHA_2863 3212959 3213207 + hypothetical protein identified by match to protein family HMM TIGR02647 gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2863 AHA_2864 AHA_2864 AHA_2864 3213623 3213832 - hypothetical protein identified by match to protein family HMM PF00313 gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2864 AHA_2865 AHA_2865 AHA_2865 3214037 3215137 - pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase component identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817 gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2865 AHA_2866 AHA_2866 AHA_2866 3215134 3216120 - pyruvate dehydrogenase E1 component subunit beta identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780 gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2866 AHA_2867 AHA_2867 AHA_2867 3216117 3217208 - pyruvate dehydrogenase E1 component subunit alpha identified by match to protein family HMM PF00676 gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2867 AHA_2868 AHA_2868 AHA_2868 3217490 3218515 - succinylglutamate desuccinylase catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2868 AHA_2869 AHA_2869 AHA_2869 3218791 3219000 - hypothetical protein gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2869 AHA_2870 AHA_2870 tus tus 3219523 3220416 + DNA replication terminus site-binding protein identified by match to protein family HMM PF05472%3B match to protein family HMM TIGR02648 gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2870 AHA_2871 AHA_2871 AHA_2871 3220539 3224381 - SNF2 family helicase identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2871 AHA_2872 AHA_2872 AHA_2872 3224596 3225249 - multidrug resistance protein A identified by match to protein family HMM PF04337 gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2872 AHA_2873 AHA_2873 AHA_2873 3225401 3227131 - lipid A core - O-antigen ligase identified by match to protein family HMM PF04932 gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2873 AHA_2874 AHA_2874 AHA_2874 3227224 3229275 - hypothetical protein identified by match to protein family HMM PF06082 gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2874 AHA_2875 AHA_2875 AHA_2875 3229305 3230063 - hypothetical protein gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2875 AHA_2876 AHA_2876 AHA_2876 3230060 3230749 - hypothetical protein gene gene2873 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2876 AHA_2877 AHA_2877 AHA_2877 3231196 3233370 - tyrosine-protein kinase identified by match to protein family HMM PF02706 gene gene2874 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2877 AHA_2878 AHA_2878 AHA_2878 3233433 3233861 - low molecular weight protein-tyrosine-phosphatase ptp identified by match to protein family HMM PF01451 gene gene2875 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2878 AHA_2879 AHA_2879 AHA_2879 3234098 3235213 - capsular polysaccharide transport protein identified by match to protein family HMM PF02563 gene gene2876 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2879 AHA_2880 AHA_2880 AHA_2880 3235549 3236715 - UDP-glucose 6-dehydrogenase identified by match to protein family HMM PF00984%3B match to protein family HMM PF01210%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2880 AHA_2881 AHA_2881 AHA_2881 3236728 3237741 - nucleotide sugar epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2881 AHA_2882 AHA_2882 AHA_2882 3237765 3238838 - hypothetical protein gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2882 AHA_2883 AHA_2883 AHA_2883 3238865 3239671 - glycosyl transferase family protein identified by match to protein family HMM PF00535 gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2883 AHA_2884 AHA_2884 AHA_2884 3239673 3240494 - glycosyl transferase family protein gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2884 AHA_2885 AHA_2885 AHA_2885 3240498 3241592 - glycoside hydrolase family protein identified by match to protein family HMM PF00534 gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2885 AHA_2886 AHA_2886 AHA_2886 3241655 3242869 - polysaccharide biosynthesis protein identified by match to protein family HMM PF01943 gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2886 AHA_2887 AHA_2887 AHA_2887 3242871 3243986 - NAD(P) transhydrogenase subunit alpha identified by match to protein family HMM PF01262 gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2887 AHA_2888 AHA_2888 AHA_2888 3243979 3245001 - hypothetical protein gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2888 AHA_2889 AHA_2889 wecA wecA 3245060 3246139 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR02380 gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2889 AHA_2890 AHA_2890 AHA_2890 3246596 3247573 - hypothetical protein gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2890 AHA_2891 AHA_2891 AHA_2891 3247664 3249649 - protein WbgZ identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993 gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2891 AHA_2892 AHA_2892 AHA_2892 3249646 3250671 - glycoside hydrolase family protein identified by match to protein family HMM PF00953 gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2892 AHA_2893 AHA_2893 AHA_2893 3250671 3251675 - UDP-glucose 4-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF03447%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2893 AHA_2894 AHA_2894 AHA_2894 3251641 3252765 - group 1 glycosyl transferase identified by match to protein family HMM PF00534 gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2894 AHA_2895 AHA_2895 AHA_2895 3252743 3253231 - GDP-mannose mannosyl hydrolase identified by match to protein family HMM PF00293 gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2895 AHA_2896 AHA_2896 AHA_2896 3253246 3253863 - acetyltransferase identified by match to protein family HMM PF00132 gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2896 AHA_2897 AHA_2897 AHA_2897 3253868 3255508 - glycoside hydrolase family protein identified by match to protein family HMM PF00534 gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2897 AHA_2898 AHA_2898 AHA_2898 3255499 3257784 - glycosytransferase gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2898 AHA_2899 AHA_2899 AHA_2899 3257781 3258539 - RfbE%2C O-antigen export system ATP-binding protein RfbE identified by match to protein family HMM PF00005 gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2899 AHA_2900 AHA_2900 AHA_2900 3258536 3259321 - ABC transporter permease identified by match to protein family HMM PF01061 gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2900 AHA_2901 AHA_2901 AHA_2901 3259386 3260474 - perosamine synthetase%2C Per protein identified by match to protein family HMM PF01041 gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2901 AHA_2902 AHA_2902 gmd gmd 3260477 3261598 - GDP-mannose 4%2C6-dehydratase identified by match to protein family HMM PF01370%3B match to protein family HMM TIGR01472 gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2902 AHA_2903 AHA_2903 AHA_2903 3261613 3262977 - phosphomannomutase identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880 gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2903 AHA_2904 AHA_2904 AHA_2904 3263008 3264405 - mannose-1-phosphate guanylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM PF01050%3B match to protein family HMM PF07883%3B match to protein family HMM TIGR01479 gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2904 AHA_2905 AHA_2905 rfbC-1 rfbC-1 3264408 3264971 - dTDP-4-dehydrorhamnose 3%2C5-epimerase identified by match to protein family HMM PF00908%3B match to protein family HMM TIGR01221 gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2905 AHA_2906 AHA_2906 rfbA rfbA 3265028 3265912 - glucose-1-phosphate thymidylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01207 gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2906 AHA_2907 AHA_2907 rfbD rfbD 3266025 3266912 - dTDP-4-dehydrorhamnose reductase with dTDP-4-dehydrorhamnose 3%2C5-epimerase forms a complex known as dTDP-L-rhamnose synthetase%3B catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2907 AHA_2908 AHA_2908 rfbB rfbB 3266912 3267997 - dTDP-glucose-4%2C6-dehydratase NAD(P) binding%3B catalyzes the formation of dTDP-4-dehydro-6-deoxy-D-glucose from dTDP-glucose gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2908 AHA_2909 AHA_2909 AHA_2909 3268759 3270174 - outer membrane protein OprM identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845 gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2909 AHA_2910 AHA_2910 AHA_2910 3270167 3273316 - AcrB protein identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2910 AHA_2911 AHA_2911 acrA acrA 3273334 3274527 - acriflavin resistance protein A identified by similarity to SP:P31223%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2911 AHA_2912 AHA_2912 AHA_2912 3274670 3275311 + TetR family regulatory protein identified by match to protein family HMM PF00440 gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2912 AHA_2913 AHA_2913 AHA_2913 3274867 3276066 + hypothetical protein gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2913 AHA_2914 AHA_2914 AHA_2914 3276262 3277440 + proton/sodium-glutamate symport protein identified by match to protein family HMM PF00375 gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2914 AHA_2915 AHA_2915 AHA_2915 3277489 3277857 - glyoxalase identified by match to protein family HMM PF00903 gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2915 AHA_2916 AHA_2916 tesB tesB 3277971 3278843 - acyl-CoA thioesterase identified by match to protein family HMM PF02551%3B match to protein family HMM TIGR00189 gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2916 AHA_2917 AHA_2917 AHA_2917 3279044 3279967 - ribosomal large subunit pseudouridine synthase B identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093 gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2917 AHA_2918 AHA_2918 scpB scpB 3279960 3280556 - segregation and condensation protein B identified by match to protein family HMM PF04079%3B match to protein family HMM TIGR00281 gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2918 AHA_2919 AHA_2919 AHA_2919 3280592 3281548 - segregation and condensation protein A identified by match to protein family HMM PF02616 gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2919 AHA_2920 AHA_2920 AHA_2920 3281496 3282185 - Sua5/YciO/YrdC/YwlC family protein identified by match to protein family HMM PF01300%3B match to protein family HMM TIGR00057 gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2920 AHA_2921 AHA_2921 AHA_2921 3282219 3283100 - phosphotransferase domain-containing protein identified by match to protein family HMM PF02811 gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2921 AHA_2923 AHA_2923 trpE trpE 3283538 3285172 + anthranilate synthase component I with component II%2C the glutamine amidotransferase%2C catalyzes the formation of anthranilate from chorismate and glutamine gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2923 AHA_2924 AHA_2924 AHA_2924 3285165 3285764 + anthranilate synthase component II identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR00566 gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2924 AHA_2925 AHA_2925 trpD trpD 3285775 3286803 + anthranilate phosphoribosyltransferase Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2925 AHA_2926 AHA_2926 trpCF trpCF 3286914 3288299 + bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2926 AHA_2927 AHA_2927 trpB trpB 3288380 3289573 + tryptophan synthase subunit beta catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2927 AHA_2928 AHA_2928 trpA trpA 3289570 3290376 + tryptophan synthase subunit alpha catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2928 AHA_2929 AHA_2929 AHA_2929 3291480 3292478 + patatin identified by match to protein family HMM PF01734 gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2929 AHA_2930 AHA_2930 AHA_2930 3293338 3293943 - hypothetical protein identified by match to protein family HMM PF04307 gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2930 AHA_2931 AHA_2931 AHA_2931 3294085 3294327 + hypothetical protein gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2931 AHA_2932 AHA_2932 AHA_2932 3294525 3295067 + hypothetical protein gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2932 AHA_2933 AHA_2933 AHA_2933 3295137 3295580 - inhibitor of vertebrate lysozyme gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2933 AHA_2934 AHA_2934 AHA_2934 3295763 3296974 - nucleoside permease NupC identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804 gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2934 AHA_2935 AHA_2935 AHA_2935 3297650 3298612 + transporter identified by match to protein family HMM PF02698%3B match to protein family HMM PF07719 gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2935 AHA_2936 AHA_2936 tauA tauA 3298985 3299959 + taurine ABC transporter%2C periplasmic binding protein identified by match to protein family HMM PF04069%3B match to protein family HMM TIGR01729 gene gene2932 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2936 AHA_2937 AHA_2937 tauB tauB 3299983 3300750 + taurine transporter ATP-binding subunit Part of the ABC transporter complex tauABC involved in taurine import gene gene2933 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2937 AHA_2938 AHA_2938 tauC tauC 3300747 3301577 + taurine transporter subunit identified by similarity to Q47539%3B match to protein family HMM PF00528 gene gene2934 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2938 AHA_2939 AHA_2939 tauD tauD 3301574 3302428 + taurine dioxygenase catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide%3B non-heme iron oxidase%3B allows the use of taurine as an alternative sulfur source%3B forms homodimers gene gene2935 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2939 AHA_2940 AHA_2940 AHA_2940 3302680 3304344 + secretory tripeptidyl aminopeptidase identified by match to protein family HMM PF00561 gene gene2936 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2940 AHA_2941 AHA_2941 AHA_2941 3304433 3305794 - inner membrane transport protein YajR identified by match to protein family HMM PF07690 gene gene2937 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2941 AHA_2942 AHA_2942 cyoE cyoE 3305984 3306880 - protoheme IX farnesyltransferase converts protoheme IX and farnesyl diphosphate to heme O gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2942 AHA_2943 AHA_2943 AHA_2943 3306892 3307224 - cytochrome o ubiquinol oxidase subunit IV identified by match to protein family HMM PF03626%3B match to protein family HMM TIGR02847 gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2943 AHA_2944 AHA_2944 cyoC cyoC 3307225 3307836 - cytochrome o ubiquinol oxidase subunit III identified by match to protein family HMM PF00510%3B match to protein family HMM TIGR02842 gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2944 AHA_2945 AHA_2945 AHA_2945 3307841 3309817 - ubiquinol oxidase subunit I identified by match to protein family HMM PF00115%3B match to protein family HMM TIGR02843 gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2945 AHA_2946 AHA_2946 AHA_2946 3309817 3310860 - ubiquinol oxidase polypeptide II identified by match to protein family HMM PF00116%3B match to protein family HMM PF06481%3B match to protein family HMM TIGR01433 gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2946 AHA_2947 AHA_2947 AHA_2947 3311497 3313422 + twin-arginine translocation pathway signal identified by match to protein family HMM TIGR01409 gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2947 AHA_2948 AHA_2948 AHA_2948 3313419 3314618 + cytochrome c family protein gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2948 AHA_2949 AHA_2949 AHA_2949 3314681 3315001 - hypothetical protein gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2949 AHA_2950 AHA_2950 AHA_2950 3315138 3316106 - inosine-uridine preferring nucleoside hydrolase superfamily protein identified by match to protein family HMM PF01156 gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2950 AHA_2951 AHA_2951 AHA_2951 3316318 3316947 + hypothetical protein identified by match to protein family HMM PF05962 gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2951 AHA_2952 AHA_2952 AHA_2952 3316973 3317176 - hypothetical protein gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2952 AHA_2953 AHA_2953 azu azu 3317368 3317808 - azurin identified by match to protein family HMM PF00127%3B match to protein family HMM TIGR02695 gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2953 AHA_2954 AHA_2954 AHA_2954 3318138 3319172 + thiamine biosynthesis lipoprotein ApbE identified by match to protein family HMM PF02424 gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2954 AHA_2955 AHA_2955 AHA_2955 3319283 3320488 - major facilitator family transporter identified by match to protein family HMM PF07690 gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2955 AHA_2956 AHA_2956 AHA_2956 3320617 3322461 + TPR repeat-containing response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721 gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2956 AHA_2957 AHA_2957 AHA_2957 3322516 3323478 + potassium channel protein identified by match to protein family HMM PF00805%3B match to protein family HMM PF07885 gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2957 AHA_2958 AHA_2958 xth xth 3323590 3324396 + exodeoxyribonuclease III identified by similarity to SP:P09030%3B match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633 gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2958 AHA_2959 AHA_2959 AHA_2959 3324735 3325934 + acriflavin resistance protein A identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2959 AHA_2960 AHA_2960 AHA_2960 3325944 3329072 + RND efflux transporter identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915 gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2960 AHA_2961 AHA_2961 AHA_2961 3329088 3329684 + hypothetical protein gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2961 AHA_2962 AHA_2962 AHA_2962 3329986 3331485 + copper/silver resistance periplasmic protein identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2962 AHA_2963 AHA_2963 AHA_2963 3331559 3334687 + cation efflux system protein CusA identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00914 gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2963 AHA_2964 AHA_2964 AHA_2964 3334692 3335108 + secretion protein HlyD gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2964 AHA_2965 AHA_2965 AHA_2965 3335215 3336003 - hypothetical protein gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2965 AHA_2966 AHA_2966 AHA_2966 3336231 3337925 - decarboxylase%2C group II identified by match to protein family HMM PF00282 gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2966 AHA_2967 AHA_2967 lplA lplA 3338114 3339130 - lipoate-protein ligase A Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2967 AHA_2968 AHA_2968 AHA_2968 3339575 3342004 + PAS/GGDEF domain-containing protein identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01814%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254%3B match to protein family HMM TIGR02481 gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2968 AHA_2969 AHA_2969 AHA_2969 3342065 3345274 - AcrB/AcrD/AcrF family transporter identified by match to protein family HMM PF00873 gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2969 AHA_2970 AHA_2970 AHA_2970 3345267 3346304 - AcrA/AcrE family protein identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2970 AHA_2971 AHA_2971 AHA_2971 3346341 3346796 - hypothetical protein identified by match to protein family HMM PF04143 gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2971 AHA_2972 AHA_2972 AHA_2972 3346801 3347211 - hypothetical protein identified by match to protein family HMM PF04143 gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2972 AHA_2973 AHA_2973 AHA_2973 3347211 3347528 - nodulation protein NolR identified by match to protein family HMM PF01022 gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2973 AHA_2974 AHA_2974 AHA_2974 3347616 3347801 + inner membrane protein YgaP gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2974 AHA_2975 AHA_2975 AHA_2975 3348219 3348593 + hypothetical protein gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2975 AHA_2976 AHA_2976 AHA_2976 3348797 3349525 + Mg2+ transporter identified by match to protein family HMM PF02308 gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2976 AHA_2977 AHA_2977 AHA_2977 3349602 3350627 - fructose repressor identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2977 AHA_2978 AHA_2978 AHA_2978 3350655 3352070 - sucrose-6-phosphate hydrolase identified by match to protein family HMM PF00251%3B match to protein family HMM TIGR01322 gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2978 AHA_2979 AHA_2979 AHA_2979 3352070 3353434 - pts system%2C sucrose-specific IIBC component identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR00852%3B match to protein family HMM TIGR01996 gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2979 AHA_2980 AHA_2980 AHA_2980 3353518 3354474 - aminoimidazole riboside kinase phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P)%3B synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2980 AHA_2981 AHA_2981 AHA_2981 3354590 3356080 - sucrose porin identified by match to protein family HMM PF02264 gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2981 AHA_2982 AHA_2982 dnaJ dnaJ 3356344 3357486 - molecular chaperone DnaJ chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2982 AHA_2983 AHA_2983 dnaK dnaK 3357741 3359669 - molecular chaperone DnaK heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2983 AHA_2984 AHA_2984 grpE grpE 3359973 3360548 - heat shock protein GrpE with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2984 AHA_2985 AHA_2985 ppnK ppnK 3360638 3361702 + inorganic polyphosphate/ATP-NAD kinase catalyzes the phosphorylation of NAD to NADP gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2985 AHA_2986 AHA_2986 recN recN 3361814 3363478 + recombination and repair protein identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00634 gene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2986 AHA_2987 AHA_2987 AHA_2987 3364060 3364953 + manganese-dependent inorganic pyrophosphatase identified by match to protein family HMM PF01368 gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2987 AHA_2988 AHA_2988 AHA_2988 3365314 3365754 + hypothetical protein gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2988 AHA_2989 AHA_2989 AHA_2989 3365969 3367132 + macrolide-specific efflux protein MacA identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730 gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2989 AHA_2990 AHA_2990 AHA_2990 3367129 3369072 + macrolide-specific ABC-type efflux carrier identified by match to protein family HMM PF00005%3B match to protein family HMM PF02687 gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2990 AHA_2991 AHA_2991 AHA_2991 3369069 3370442 + outer membrane efflux protein identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845 gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2991 AHA_2992 AHA_2992 AHA_2992 3370614 3371420 + vibriobactin utilization protein ViuB identified by match to protein family HMM PF04954%3B match to protein family HMM PF08021 gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2992 AHA_2993 AHA_2993 AHA_2993 3371634 3372788 + phospho-2-dehydro-3-deoxyheptonate aldolase catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose-4-phosphate gene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2993 AHA_2994 AHA_2994 AHA_2994 3373371 3373781 - DNA-binding protein StpA identified by match to protein family HMM PF00816 gene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2994 AHA_2995 AHA_2995 AHA_2995 3374198 3374656 - acetyltransferase identified by match to protein family HMM PF00583 gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2995 AHA_2996 AHA_2996 AHA_2996 3374807 3375307 + hypothetical protein gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2996 AHA_2997 AHA_2997 AHA_2997 3375377 3375718 - inner membrane protein YhaI identified by match to protein family HMM PF05656 gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2997 AHA_2998 AHA_2998 AHA_2998 3376442 3377380 + transcriptional regulatory protein%2C C terminal identified by match to protein family HMM PF00486 gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2998 AHA_2999 AHA_2999 AHA_2999 3377952 3379229 - FAD dependent oxidoreductase identified by match to protein family HMM PF01266 gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2999 AHA_3000 AHA_3000 AHA_3000 3379281 3379892 - DNA-binding transcriptional repressor PuuR regulates genes involved in putrescine degradation gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3000 AHA_3001 AHA_3001 AHA_3001 3380203 3381666 + succinate-semialdehyde dehydrogenase identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01780 gene gene2997 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3001 AHA_3002 AHA_3002 gabT gabT 3381816 3383105 + 4-aminobutyrate aminotransferase identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00700 gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3002 AHA_3003 AHA_3003 AHA_3003 3383463 3384806 + amino acid permease identified by match to protein family HMM PF00324 gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3003 AHA_3004 AHA_3004 AHA_3004 3385313 3386656 + amino acid permease identified by match to protein family HMM PF00324 gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3004 AHA_3005 AHA_3005 AHA_3005 3386755 3387264 - hypothetical protein gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3005 AHA_3006 AHA_3006 AHA_3006 3387384 3388538 + sodium dependent phosphate pump identified by match to protein family HMM PF02690 gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3006 AHA_3007 AHA_3007 AHA_3007 3388706 3389176 + fkbp-type peptidyl-prolyl cis-trans isomerase fkpa identified by match to protein family HMM PF00254 gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3007 AHA_3008 AHA_3008 AHA_3008 3389563 3390330 + extradiol ring-cleavage dioxygenase%2C class III enzyme%2C subunit B identified by match to protein family HMM PF02900 gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3008 AHA_3009 AHA_3009 AHA_3009 3390494 3393763 + virulence sensor protein BvgS identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229 gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3009 AHA_3010 AHA_3010 deoD-1 deoD-1 3394220 3394921 - purine nucleoside phosphorylase catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3010 AHA_3011 AHA_3011 AHA_3011 3395208 3395618 - hypothetical protein gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3011 AHA_3012 AHA_3012 AHA_3012 3396182 3397264 + region found in RelA / SpoT proteins identified by match to protein family HMM PF04607 gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3012 AHA_3013 AHA_3013 AHA_3013 3397606 3399177 - ABC transporter ATPase identified by match to protein family HMM PF00005 gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3013 AHA_3014 AHA_3014 AHA_3014 3399584 3400486 + hypothetical protein gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3014 AHA_3015 AHA_3015 AHA_3015 3401253 3403058 - exoenzymes regulatory protein AepA identified by match to protein family HMM PF07969 gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3015 AHA_3016 AHA_3016 thrC thrC 3403482 3404756 - threonine synthase catalyzes the formation of L-threonine from O-phospho-L-homoserine gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3016 AHA_3017 AHA_3017 thrB thrB 3404753 3405733 - homoserine kinase catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3017 AHA_3018 AHA_3018 thrA thrA 3405736 3408195 - bifunctional aspartokinase I/homoserine dehydrogenase I multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3018 AHA_3019 AHA_3019 AHA_3019 3408319 3408402 - thr operon leader peptide gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3019 AHA_3020 AHA_3020 AHA_3020 3408456 3409148 - RNA methyltransferase member of the SPOUT superfamily of methyltransferases gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3020 AHA_3021 AHA_3021 aceK aceK 3409344 3411071 + bifunctional isocitrate dehydrogenase kinase/phosphatase catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity%3B unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3021 AHA_3022 AHA_3022 AHA_3022 3411187 3411534 - hypothetical protein identified by match to protein family HMM PF03724 gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3022 AHA_3023 AHA_3023 AHA_3023 3411758 3412234 + hypothetical protein gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3023 AHA_3024 AHA_3024 rraA-1 rraA-1 3412240 3412719 - ribonuclease activity regulator protein RraA regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3024 AHA_3025 AHA_3025 AHA_3025 3412762 3413178 - hypothetical protein gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3025 AHA_3026 AHA_3026 arcA-1 arcA-1 3413555 3414274 + two-component response regulator identified by similarity to SP:P0A9Q1%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3026 AHA_3027 AHA_3027 AHA_3027 3414420 3414494 - tRNA-Gly tRNA gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3027 AHA_3028 AHA_3028 AHA_3028 3414589 3414662 - tRNA-Gly tRNA gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3028 AHA_3029 AHA_3029 AHA_3029 3414864 3416633 + cysteine/glutathione ABC transporter membrane/ATP-binding protein in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3029 AHA_3030 AHA_3030 AHA_3030 3416626 3418371 + cysteine/glutathione ABC transporter membrane/ATP-binding protein in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3030 AHA_3031 AHA_3031 AHA_3031 3418625 3418996 + exopolysaccharide synthesis regulator RcsF gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3031 AHA_3032 AHA_3032 AHA_3032 3419019 3419411 + hypothetical protein gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3032 AHA_3033 AHA_3033 AHA_3033 3419482 3420462 - isoflavone reductase identified by match to protein family HMM PF01370%3B match to protein family HMM PF07993 gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3033 AHA_3034 AHA_3034 AHA_3034 3420710 3421417 + hypothetical protein identified by match to protein family HMM PF01980%3B match to protein family HMM TIGR00104 gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3034 AHA_3035 AHA_3035 AHA_3035 3421481 3422602 - 3-oxoacyl-ACP synthase catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3035 AHA_3036 AHA_3036 AHA_3036 3422658 3423821 - hypothetical protein gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3036 AHA_3037 AHA_3037 AHA_3037 3423825 3424667 - ATPase AAA identified by match to protein family HMM PF00004%3B match to protein family HMM PF07728 gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3037 AHA_3038 AHA_3038 cysK cysK 3424835 3425803 + cysteine synthase A identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01139 gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3038 AHA_3039 AHA_3039 ptsH ptsH 3426246 3426503 + phosphocarrier protein PtsH identified by similarity to SP:P16481%3B match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3039 AHA_3040 AHA_3040 ptsI-2 ptsI-2 3426548 3428275 + phosphoenolpyruvate-protein phosphotransferase Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3040 AHA_3041 AHA_3041 crr crr 3428319 3428828 + PTS system glucose-specific transporter functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system%3B functions in the transport and phosphorylation of glucose gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3041 AHA_3042 AHA_3042 AHA_3042 3428907 3429965 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3042 AHA_3043 AHA_3043 AHA_3043 3429931 3430749 - hypothetical protein gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3043 AHA_3044 AHA_3044 AHA_3044 3430969 3431514 + cytochrome b561 identified by match to protein family HMM PF01292 gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3044 AHA_3045 AHA_3045 AHA_3045 3431598 3435353 - exonuclease SbcC identified by match to protein family HMM PF02463 gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3045 AHA_3046 AHA_3046 AHA_3046 3435436 3436662 - nuclease sbcCD subunit D identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00619 gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3046 AHA_3047 AHA_3047 AHA_3047 3436764 3437192 - acetyltransferase YjaB identified by match to protein family HMM PF00583 gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3047 AHA_3048 AHA_3048 rdgC rdgC 3437373 3438284 + recombination associated protein Required for efficient pilin antigenic variation gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3048 AHA_3049 AHA_3049 AHA_3049 3438464 3440242 + gamma-glutamyltranspeptidase identified by match to protein family HMM PF01019 gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3049 AHA_3050 AHA_3050 AHA_3050 3440629 3442272 + monovalent cation:proton antiporter family protein identified by match to protein family HMM PF00999%3B match to protein family HMM PF02254 gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3050 AHA_3051 AHA_3051 AHA_3051 3442315 3443853 + leucyl aminopeptidase identified by match to protein family HMM PF01546%3B match to protein family HMM PF04389 gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3051 AHA_3052 AHA_3052 pyk-3 pyk-3 3444421 3445869 + pyruvate kinase catalyzes the formation of phosphoenolpyruvate from pyruvate gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3052 AHA_3053 AHA_3053 kefA kefA 3446019 3449342 + potassium efflux system KefA identified by similarity to SP:P77338%3B match to protein family HMM PF00924 gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3053 AHA_3054 AHA_3054 AHA_3054 3449552 3450385 + hypothetical protein gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3054 AHA_3055 AHA_3055 AHA_3055 3450450 3451457 + 6-phosphogluconolactonase gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3055 AHA_3056 AHA_3056 uraA uraA 3451559 3452854 - uracil permease identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR00801 gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3056 AHA_3057 AHA_3057 AHA_3057 3453103 3454422 + intein-containing protein identified by match to protein family HMM TIGR01443 gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3057 AHA_3058 AHA_3058 AHA_3058 3454419 3454760 + 17 kDa antigen gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3058 AHA_3059 AHA_3059 AHA_3059 3454830 3456545 - malate dehydrogenase malic enzyme%3B oxaloacetate-decarboxylating%3B NAD-dependent%3B catalyzes the formation of pyruvate form malate gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3059 AHA_3060 AHA_3060 AHA_3060 3456786 3457916 + two-component hybrid sensor and regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3060 AHA_3061 AHA_3061 AHA_3061 3457985 3458956 - formate dehydrogenase%2C cytochrome b556 subunit identified by match to protein family HMM TIGR01583 gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3061 AHA_3062 AHA_3062 AHA_3062 3458953 3459576 - formate dehydrogenase iron-sulfur subunit identified by match to protein family HMM PF00037 gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3062 AHA_3063 AHA_3063 AHA_3063 3459581 3462481 - formate dehydrogenase identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01409 gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3063 AHA_3064 AHA_3064 AHA_3064 3462505 3462708 - Tat pathway signal sequence domain-containing protein identified by match to protein family HMM TIGR01409%3B match to protein family HMM TIGR02811 gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3064 AHA_3065 AHA_3065 AHA_3065 3462778 3463398 - TorD family cytoplasmic chaperone identified by match to protein family HMM PF06192 gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3065 AHA_3066 AHA_3066 AHA_3066 3463409 3465139 - (Fe-S)-binding protein identified by match to protein family HMM PF00037 gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3066 AHA_3067 AHA_3067 AHA_3067 3465244 3465921 - hypothetical protein gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3067 AHA_3068 AHA_3068 AHA_3068 3465839 3466429 - hypothetical protein gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3068 AHA_3069 AHA_3069 AHA_3069 3466704 3467702 - type I restriction enzyme r protein n terminus (hsdr n) identified by match to protein family HMM PF04313 gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3069 AHA_3070 AHA_3070 AHA_3070 3467969 3468826 + formate dehydrogenase accessory protein identified by match to protein family HMM PF02634 gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3070 AHA_3071 AHA_3071 AHA_3071 3468922 3469782 + hypothetical protein gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3071 AHA_3072 AHA_3072 atoS atoS 3470007 3472100 - sensory box sensor histidine kinase AtoS identified by similarity to SP:Q06067%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3072 AHA_3073 AHA_3073 AHA_3073 3472132 3473487 - acetoacetate metabolism regulatory protein AtoC identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728 gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3073 AHA_3074 AHA_3074 AHA_3074 3473736 3474578 + extracellular tungstate binding protein gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3074 AHA_3075 AHA_3075 AHA_3075 3474646 3475347 + molybdenum transport system permease ModB identified by match to protein family HMM PF00528 gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3075 AHA_3076 AHA_3076 AHA_3076 3475463 3476158 + molybdenum transport ATP-binding protein ModC identified by match to protein family HMM PF00005 gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3076 AHA_3077 AHA_3077 mobA mobA 3476130 3476768 + molybdopterin-guanine dinucleotide biosynthesis protein A identified by similarity to SP:P32173%3B match to protein family HMM TIGR02665 gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3077 AHA_3078 AHA_3078 AHA_3078 3476765 3478510 + bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA identified by match to protein family HMM PF00994%3B match to protein family HMM PF03205%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00176%3B match to protein family HMM TIGR00177 gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3078 AHA_3079 AHA_3079 AHA_3079 3478574 3479632 + inner membrane protein YeeA gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3079 AHA_3080 AHA_3080 AHA_3080 3479703 3481076 - metal-dependent phosphohydrolase identified by match to protein family HMM PF01966 gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3080 AHA_3081 AHA_3081 AHA_3081 3481164 3481784 - multidrug ABC transporter ATPase/permease gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3081 AHA_3082 AHA_3082 AHA_3082 3481913 3483181 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229 gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3082 AHA_3083 AHA_3083 AHA_3083 3483402 3483863 - acetyltransferase identified by match to protein family HMM PF00583 gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3083 AHA_3084 AHA_3084 AHA_3084 3483942 3484385 - DoxX protein identified by match to protein family HMM PF07681 gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3084 AHA_3085 AHA_3085 AHA_3085 3484391 3485146 - hypothetical protein gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3085 AHA_3086 AHA_3086 AHA_3086 3485139 3485987 - hypothetical protein identified by match to protein family HMM PF05114 gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3086 AHA_3087 AHA_3087 AHA_3087 3486059 3486322 - signal peptide protein gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3087 AHA_3088 AHA_3088 AHA_3088 3486681 3486881 - hypothetical protein identified by similarity to GB:CAH22153.1 gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3088 AHA_3089 AHA_3089 AHA_3089 3487096 3487389 + hypothetical protein gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3089 AHA_3090 AHA_3090 AHA_3090 3487450 3487523 - tRNA-Cys tRNA gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3090 AHA_3091 AHA_3091 AHA_3091 3487579 3487654 - tRNA-Gly tRNA gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3091 AHA_3092 AHA_3092 AHA_3092 3487862 3491341 + sensory box sensor histidine kinase/response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3092 AHA_3093 AHA_3093 AHA_3093 3491744 3493429 + peptide ABC transporter periplasmic peptide-binding protein identified by match to protein family HMM PF00496 gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3093 AHA_3094 AHA_3094 AHA_3094 3493549 3494532 + peptide ABC transporter permease identified by match to protein family HMM PF00528 gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3094 AHA_3095 AHA_3095 AHA_3095 3494534 3495454 + chitooligosaccharide transport system permease identified by match to protein family HMM PF00528 gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3095 AHA_3096 AHA_3096 AHA_3096 3495451 3496473 + peptide ABC transporter%2C ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3096 AHA_3097 AHA_3097 AHA_3097 3496485 3497477 + oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3097 AHA_3098 AHA_3098 AHA_3098 3497580 3499313 + endochitinase identified by match to protein family HMM PF00759 gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3098 AHA_3099 AHA_3099 AHA_3099 3499306 3500178 + N-acetylglucosamine kinase identified by match to protein family HMM PF01869 gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3099 AHA_3100 AHA_3100 AHA_3100 3500339 3502207 + beta-hexosaminidase identified by match to protein family HMM PF00728 gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3100 AHA_3101 AHA_3101 AHA_3101 3502424 3503977 + aerotaxis receptor Aer identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229 gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3101 AHA_3102 AHA_3102 AHA_3102 3504045 3504401 + methylated-DNA binding protein identified by match to protein family HMM PF01035 gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3102 AHA_3103 AHA_3103 AHA_3103 3504417 3504698 - hypothetical protein gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3103 AHA_3104 AHA_3104 topA topA 3504699 3507320 - DNA topoisomerase I catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3104 AHA_3105 AHA_3105 astB astB 3507682 3509019 + succinylarginine dihydrolase catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine%2C ammonia and carbon dioxide in arginine degradation gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3105 AHA_3106 AHA_3106 sohB sohB 3509106 3510113 - periplasmic protease SohB%3B periplasmic protein%3B member of the peptidase S49 family gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3106 AHA_3107 AHA_3107 AHA_3107 3510347 3511102 + short chain dehydrogenase/reductase family oxidoreductase identified by match to protein family HMM PF00106 gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3107 AHA_3108 AHA_3108 AHA_3108 3511202 3512086 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3108 AHA_3109 AHA_3109 AHA_3109 3512153 3513325 - sugar efflux transporter identified by match to protein family HMM PF07690 gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3109 AHA_3110 AHA_3110 AHA_3110 3513487 3514623 + aminotransferase B identified by match to protein family HMM PF00155 gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3110 AHA_3111 AHA_3111 AHA_3111 3514517 3516274 + immunogenic protein identified by match to protein family HMM TIGR02122 gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3111 AHA_3112 AHA_3112 AHA_3112 3516345 3517253 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3112 AHA_3113 AHA_3113 purA purA 3517441 3518697 + adenylosuccinate synthetase identified by match to protein family HMM PF00709 gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3113 AHA_3114 AHA_3114 AHA_3114 3518912 3519448 + phosphatidylethanolamine-binding protein identified by match to protein family HMM PF01161%3B match to protein family HMM TIGR00481 gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3114 AHA_3115 AHA_3115 AHA_3115 3519460 3520272 + AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3115 AHA_3116 AHA_3116 AHA_3116 3520457 3522937 + glycosyl hydrolase gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3116 AHA_3117 AHA_3117 tyrS-2 tyrS-2 3523016 3524215 - tyrosyl-tRNA synthetase identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234 gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3117 AHA_3118 AHA_3118 AHA_3118 3524330 3525640 + cell wall endopeptidase identified by match to protein family HMM PF01551 gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3118 AHA_3119 AHA_3119 anmK anmK 3525781 3526884 + anhydro-N-acetylmuramic acid kinase catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3119 AHA_3120 AHA_3120 hchA hchA 3526974 3527837 - chaperone protein HchA Hsp31 stabilizes early unfolding protein intermediates under severe heat stress gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3120 AHA_3121 AHA_3121 AHA_3121 3527987 3528094 + hypothetical protein gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3121 AHA_3122 AHA_3122 AHA_3122 3528663 3529928 + endoribonuclease L-PSP identified by match to protein family HMM PF01042 gene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3122 AHA_3123 AHA_3123 tkt tkt 3530898 3532889 - transketolase catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3123 AHA_3124 AHA_3124 metK metK 3533232 3534383 + S-adenosylmethionine synthetase catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3124 AHA_3125 AHA_3125 sprT sprT 3534453 3534986 + SprT protein identified by match to protein family HMM PF03926 gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3125 AHA_3126 AHA_3126 AHA_3126 3534995 3535747 + extracellular deoxyribonuclease identified by match to protein family HMM PF04231 gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3126 AHA_3127 AHA_3127 AHA_3127 3535811 3536542 + hypothetical protein identified by match to protein family HMM PF04452%3B match to protein family HMM TIGR00046 gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3127 AHA_3128 AHA_3128 gshB gshB 3536657 3537610 + glutathione synthase identified by match to protein family HMM PF02951%3B match to protein family HMM PF02955%3B match to protein family HMM TIGR01380 gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3128 AHA_3129 AHA_3129 AHA_3129 3537722 3539347 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3129 AHA_3130 AHA_3130 AHA_3130 3539433 3540020 + hypothetical protein identified by match to protein family HMM PF02622 gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3130 AHA_3131 AHA_3131 AHA_3131 3540067 3540489 + Holliday junction resolvase-like protein similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3131 AHA_3132 AHA_3132 AHA_3132 3540536 3542041 - inner membrane transporter YhiP member of the POT family of peptide transporters%3B probable proton-dependent peptide transporter function gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3132 AHA_3133 AHA_3133 AHA_3133 3542593 3543564 - HTH-type transcriptional regulator YidZ identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3133 AHA_3134 AHA_3134 AHA_3134 3543741 3544523 - hypothetical protein gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3134 AHA_3135 AHA_3135 ampC ampC 3545770 3547041 - beta-lactamase identified by match to protein family HMM PF00144 gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3135 AHA_3136 AHA_3136 AHA_3136 3547109 3548029 + MoxR protein identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728 gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3136 AHA_3137 AHA_3137 AHA_3137 3548029 3549015 + hypothetical protein identified by similarity to GB:BAD80406.1%3B match to protein family HMM PF01882 gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3137 AHA_3138 AHA_3138 AHA_3138 3549002 3550975 + hypothetical protein identified by match to protein family HMM PF01841 gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3138 AHA_3139 AHA_3139 agcS-2 agcS-2 3551218 3552660 - amino acid carrier protein identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835 gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3139 AHA_3140 AHA_3140 tal tal 3553392 3554354 + transaldolase B identified by match to protein family HMM PF00923%3B match to protein family HMM TIGR00874 gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3140 AHA_3141 AHA_3141 AHA_3141 3554748 3555296 - hemerythrin HHE cation binding domain-containing protein identified by match to protein family HMM PF01814 gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3141 AHA_3142 AHA_3142 ung ung 3555454 3556122 - uracil-DNA glycosylase Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3142 AHA_3143 AHA_3143 AHA_3143 3556958 3557338 + autonomous glycyl radical cofactor GrcA stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3143 AHA_3144 AHA_3144 AHA_3144 3557469 3558749 - C4-dicarboxylate transporter DctA involved in the transport of C4-dicarboxylates across the membrane gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3144 AHA_3145 AHA_3145 kdsA kdsA 3559056 3559910 - 2-dehydro-3-deoxyphosphooctonate aldolase catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3145 AHA_3146 AHA_3146 AHA_3146 3560086 3560886 - hypothetical protein gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3146 AHA_3147 AHA_3147 AHA_3147 3560898 3561281 - invasion gene expression up-regulator identified by match to protein family HMM PF04247 gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3147 AHA_3148 AHA_3148 AHA_3148 3561325 3562173 - protein methyltransferase HemK identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536 gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3148 AHA_3149 AHA_3149 prfA prfA 3562173 3563261 - peptide chain release factor 1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2 gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3149 AHA_3150 AHA_3150 hemA hemA 3563313 3564650 - glutamyl-tRNA reductase catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH%3B the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid%3B functions in porphyrin (tetrapyrroles) biosynthesis%3B the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3150 AHA_3151 AHA_3151 lolB lolB 3564694 3565278 + outer membrane lipoprotein LolB identified by match to protein family HMM PF03550%3B match to protein family HMM TIGR00548 gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3151 AHA_3152 AHA_3152 ipk ipk 3565305 3566174 + 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3152 AHA_3153 AHA_3153 AHA_3153 3566154 3566228 + tRNA-Gln tRNA gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3153 AHA_3154 AHA_3154 AHA_3154 3566469 3567485 + ribose-phosphate pyrophosphokinase catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3154 AHA_3155 AHA_3155 AHA_3155 3567588 3569579 + 5'-nucleotidase identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872 gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3155 AHA_3156 AHA_3156 pth pth 3569777 3570373 + peptidyl-tRNA hydrolase Enables the recycling of peptidyl-tRNAs produced at termination of translation gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3156 AHA_3157 AHA_3157 ychF ychF 3570608 3571699 + GTP-binding protein YchF identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092 gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3157 AHA_3158 AHA_3158 AHA_3158 3571935 3572011 + tRNA-Met tRNA gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3158 AHA_3159 AHA_3159 AHA_3159 3572020 3572094 + tRNA-Gln tRNA gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3159 AHA_3160 AHA_3160 AHA_3160 3572241 3572315 + tRNA-Gln tRNA gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3160 AHA_3161 AHA_3161 AHA_3161 3572357 3572431 + tRNA-Gln tRNA gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3161 AHA_3162 AHA_3162 AHA_3162 3572470 3572546 + tRNA-Met tRNA gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3162 AHA_3163 AHA_3163 AHA_3163 3572592 3572666 + tRNA-Gln tRNA gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3163 AHA_3164 AHA_3164 AHA_3164 3572703 3572779 + tRNA-Met tRNA gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3164 AHA_3165 AHA_3165 AHA_3165 3572788 3572871 + tRNA-Leu tRNA gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3165 AHA_3166 AHA_3166 AHA_3166 3573107 3574939 - citrate transporter identified by match to protein family HMM PF02080%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808 gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3166 AHA_3167 AHA_3167 AHA_3167 3575202 3575924 + nicotinamide mononucleotide transporter PnuC identified by similarity to SP:P31215%3B match to protein family HMM PF04973%3B match to protein family HMM TIGR01528 gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3167 AHA_3168 AHA_3168 AHA_3168 3575921 3576646 + uridine phosphorylase identified by match to protein family HMM PF01048 gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3168 AHA_3169 AHA_3169 AHA_3169 3576735 3577445 + cAMP-binding protein identified by match to protein family HMM PF00027 gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3169 AHA_3170 AHA_3170 AHA_3170 3577489 3577806 + hypothetical protein gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3170 AHA_3171 AHA_3171 AHA_3171 3577904 3578275 + hypothetical protein identified by match to protein family HMM PF07784 gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3171 AHA_3172 AHA_3172 AHA_3172 3578305 3580116 + trehalose-6-phosphate hydrolase identified by match to protein family HMM PF00128 gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3172 AHA_3173 AHA_3173 AHA_3173 3580526 3582316 + hypothetical protein gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3173 AHA_3174 AHA_3174 nifJ-2 nifJ-2 3582804 3586349 + pyruvate:ferredoxin (flavodoxin) oxidoreductase identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176 gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3174 AHA_3175 AHA_3175 AHA_3175 3586417 3587904 - EmrB/QacA family drug resistance transporter identified by match to protein family HMM PF07690 gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3175 AHA_3176 AHA_3176 AHA_3176 3587959 3588555 + phosphatase YqaB identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02009 gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3176 AHA_3177 AHA_3177 AHA_3177 3588641 3589438 - hypothetical protein gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3177 AHA_3178 AHA_3178 astD astD 3589548 3591017 - succinylglutamic semialdehyde dehydrogenase a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity%3B converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3178 AHA_3179 AHA_3179 astA astA 3591088 3592107 - arginine N-succinyltransferase subunit beta identified by match to protein family HMM PF04958 gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3179 AHA_3180 AHA_3180 argD argD 3592183 3593400 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase DapATase%3B bifunctional enzyme that functions in arginine and lysine biosynthetic pathways%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2%2C6-diaminoheptanedioate gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3180 AHA_3181 AHA_3181 AHA_3181 3593678 3594259 - para-aminobenzoate synthase glutamine amidotransferase component II identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR00566 gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3181 AHA_3182 AHA_3182 AHA_3182 3594280 3594495 - hypothetical protein gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3182 AHA_3183 AHA_3183 trpS-2 trpS-2 3594619 3595623 - tryptophanyl-tRNA synthetase identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233 gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3183 AHA_3184 AHA_3184 gph-2 gph-2 3595663 3596331 - phosphoglycolate phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01449%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3184 AHA_3185 AHA_3185 rpe rpe 3596318 3597130 - ribulose-phosphate 3-epimerase identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163 gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3185 AHA_3186 AHA_3186 AHA_3186 3597382 3598254 - DNA adenine methylase identified by match to protein family HMM PF02086%3B match to protein family HMM TIGR00571 gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3186 AHA_3187 AHA_3187 AHA_3187 3598325 3599932 - DamX-like protein identified by match to protein family HMM PF05036 gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3187 AHA_3188 AHA_3188 aroB aroB 3599922 3601004 - 3-dehydroquinate synthase catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3188 AHA_3189 AHA_3189 aroK aroK 3601019 3601537 - shikimate kinase I type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3189 AHA_3190 AHA_3190 pilQ pilQ 3601729 3603930 - type IV pilus secretin PilQ identified by match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM PF07660%3B match to protein family HMM TIGR02515 gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3190 AHA_3191 AHA_3191 AHA_3191 3603945 3604475 - type IV pilus biogenesis protein PilP identified by match to protein family HMM PF04351 gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3191 AHA_3192 AHA_3192 pilO pilO 3604472 3605071 - type IV pilus biogenesis protein PilO identified by match to protein family HMM PF04350 gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3192 AHA_3193 AHA_3193 pilN pilN 3605068 3605646 - type IV pilus biogenesis PilN identified by match to protein family HMM PF05137 gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3193 AHA_3194 AHA_3194 pilM pilM 3605634 3606704 - type IV pilus assembly protein PilM identified by match to protein family HMM TIGR01175 gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3194 AHA_3195 AHA_3195 mrcA mrcA 3606991 3609480 + penicillin-binding protein 1A identified by similarity to SP:P02918%3B match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02074 gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3195 AHA_3196 AHA_3196 AHA_3196 3609556 3610587 - hydrogen peroxide-inducible genes activator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3196 AHA_3197 AHA_3197 AHA_3197 3610608 3612248 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3197 AHA_3198 AHA_3198 AHA_3198 3612471 3613106 - thioredoxin domain-containing protein gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3198 AHA_3199 AHA_3199 AHA_3199 3613187 3614047 - Zn-dependent hydrolase identified by match to protein family HMM PF00753 gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3199 AHA_3200 AHA_3200 AHA_3200 3614174 3615073 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3200 AHA_3201 AHA_3201 AHA_3201 3615156 3615932 - hypothetical protein gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3201 AHA_3202 AHA_3202 AHA_3202 3616109 3616966 + hypothetical protein gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3202 AHA_3203 AHA_3203 AHA_3203 3617115 3617834 + M24/M37 family peptidase identified by match to protein family HMM PF01551 gene gene3199 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3203 AHA_3204 AHA_3204 AHA_3204 3617912 3619327 - mate efflux family protein identified by match to protein family HMM PF01554 gene gene3200 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3204 AHA_3205 AHA_3205 AHA_3205 3619402 3622680 + small conductance mechanosensitive Ion channel (MscS) family protein identified by match to protein family HMM PF00924 gene gene3201 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3205 AHA_3206 AHA_3206 AHA_3206 3622703 3623422 + glycerophosphoryl diester phosphodiesterase identified by match to protein family HMM PF03009 gene gene3202 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3206 AHA_3207 AHA_3207 AHA_3207 3623548 3625425 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743 gene gene3203 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3207 AHA_3208 AHA_3208 frdA frdA 3625943 3627727 + fumarate reductase flavoprotein subunit part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3208 AHA_3209 AHA_3209 AHA_3209 3627720 3628454 + fumarate reductase iron-sulfur subunit part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3209 AHA_3210 AHA_3210 AHA_3210 3628471 3628869 + fumarate reductase subunit C identified by match to protein family HMM PF02300 gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3210 AHA_3211 AHA_3211 AHA_3211 3628982 3629338 + fumarate reductase subunit D identified by match to protein family HMM PF02313 gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3211 AHA_3212 AHA_3212 AHA_3212 3629484 3630182 - hypothetical protein gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3212 AHA_3213 AHA_3213 AHA_3213 3630276 3630917 + TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3213 AHA_3214 AHA_3214 AHA_3214 3631058 3631834 - hypothetical protein gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3214 AHA_3215 AHA_3215 AHA_3215 3631891 3633111 - hypothetical protein identified by match to protein family HMM PF06224 gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3215 AHA_3216 AHA_3216 AHA_3216 3633245 3633883 - methyltransferase domain-containing protein gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3216 AHA_3217 AHA_3217 AHA_3217 3634101 3634745 + thermostable hemolysin gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3217 AHA_3218 AHA_3218 AHA_3218 3634742 3636208 + long-chain acyl-CoA synthetase identified by match to protein family HMM PF00501 gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3218 AHA_3219 AHA_3219 AHA_3219 3636205 3636864 + long-chain acyl-CoA synthetase gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3219 AHA_3220 AHA_3220 AHA_3220 3636861 3637706 + short chain dehydrogenase identified by match to protein family HMM PF00106%3B match to protein family HMM PF07993 gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3220 AHA_3221 AHA_3221 AHA_3221 3637708 3638346 + hypothetical protein gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3221 AHA_3222 AHA_3222 AHA_3222 3638429 3639118 + DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3222 AHA_3223 AHA_3223 AHA_3223 3639115 3640554 + sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3223 AHA_3224 AHA_3224 AHA_3224 3640610 3641116 - ATP-dependent Zn proteases identified by match to protein family HMM PF05618 gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3224 AHA_3225 AHA_3225 guaC guaC 3641522 3642565 + guanosine 5'-monophosphate oxidoreductase catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3225 AHA_3226 AHA_3226 AHA_3226 3642660 3643868 + hypothetical protein gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3226 AHA_3227 AHA_3227 efp efp 3643912 3644478 + elongation factor P Involved in peptide bond synthesis%3B alters the affinity of the ribosome for aminoacyl-tRNA gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3227 AHA_3228 AHA_3228 AHA_3228 3644620 3645246 + inner membrane protein YjdF gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3228 AHA_3229 AHA_3229 AHA_3229 3645314 3646066 + hypothetical protein gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3229 AHA_3230 AHA_3230 AHA_3230 3646184 3647140 + glycerate dehydrogenase identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3230 AHA_3231 AHA_3231 AHA_3231 3647202 3647672 - surface antigen family protein identified by match to protein family HMM PF05433 gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3231 AHA_3232 AHA_3232 AHA_3232 3647882 3649435 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3232 AHA_3233 AHA_3233 AHA_3233 3649724 3650326 + nitroreductase family protein gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3233 AHA_3234 AHA_3234 AHA_3234 3650375 3651025 - phosphatase YfbT identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549 gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3234 AHA_3235 AHA_3235 AHA_3235 3651022 3651267 - hypothetical protein gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3235 AHA_3236 AHA_3236 AHA_3236 3651385 3652293 + isoleucine biosynthesis transcriptional activator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3236 AHA_3237 AHA_3237 AHA_3237 3652365 3653321 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3237 AHA_3238 AHA_3238 AHA_3238 3653483 3654127 - cold-shock protein%2C DNA-binding identified by match to protein family HMM PF00313 gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3238 AHA_3239 AHA_3239 AHA_3239 3654244 3654810 - isochorismatase family protein identified by match to protein family HMM PF00857 gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3239 AHA_3240 AHA_3240 AHA_3240 3654844 3656007 - 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01988 gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3240 AHA_3241 AHA_3241 miaB miaB 3656275 3657708 + (dimethylallyl)adenosine tRNA methylthiotransferase catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3241 AHA_3242 AHA_3242 AHA_3242 3657764 3658807 + PhoH family protein identified by match to protein family HMM PF00013%3B match to protein family HMM PF02562 gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3242 AHA_3243 AHA_3243 AHA_3243 3658804 3659268 + hypothetical protein identified by match to protein family HMM PF02130%3B match to protein family HMM TIGR00043 gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3243 AHA_3244 AHA_3244 corC corC 3659364 3660248 + magnesium and cobalt efflux protein CorC identified by similarity to SP:P0A2L3%3B match to protein family HMM PF00571%3B match to protein family HMM PF03471 gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3244 AHA_3245 AHA_3245 lnt lnt 3660468 3662012 + apolipoprotein N-acyltransferase identified by similarity to SP:P23930%3B match to protein family HMM PF00795%3B match to protein family HMM TIGR00546 gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3245 AHA_3246 AHA_3246 AHA_3246 3662228 3662716 - hypothetical protein identified by similarity to GB:AAF94119.1%3B match to protein family HMM PF07295 gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3246 AHA_3247 AHA_3247 leuS leuS 3662709 3665441 + leucyl-tRNA synthetase leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3247 AHA_3248 AHA_3248 rlpB rlpB 3665541 3666041 + rare lipoprotein B identified by match to protein family HMM PF04390 gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3248 AHA_3249 AHA_3249 AHA_3249 3666066 3666212 + DNA polymerase III subunit delta gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3249 AHA_3250 AHA_3250 holA holA 3666212 3667243 + DNA polymerase III subunit delta identified by match to protein family HMM PF06144%3B match to protein family HMM TIGR01128 gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3250 AHA_3251 AHA_3251 nadD nadD 3667284 3667928 + nicotinate (nicotinamide) nucleotide adenylyltransferase identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482 gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3251 AHA_3252 AHA_3252 AHA_3252 3668114 3668455 + iojap superfamily protein identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090 gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3252 AHA_3253 AHA_3253 AHA_3253 3668478 3668945 + rRNA large subunit methyltransferase SPOUT methyltransferase family protein%3B crystal structure shows homodimer%3B in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3253 AHA_3254 AHA_3254 AHA_3254 3669051 3670967 + penicillin-binding protein 2 identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717 gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3254 AHA_3255 AHA_3255 mrdB mrdB 3670882 3672063 + rod shape-determining protein RodA identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02210 gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3255 AHA_3256 AHA_3256 AHA_3256 3672060 3672197 + rod shape-determining protein RodA gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3256 AHA_3257 AHA_3257 mltB-2 mltB-2 3672293 3673195 + lytic murein transglycosylase B identified by match to protein family HMM TIGR02282 gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3257 AHA_3258 AHA_3258 rlpA rlpA 3673137 3674102 + rare lipoprotein A identified by match to protein family HMM PF03330%3B match to protein family HMM PF05036%3B match to protein family HMM TIGR00413 gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3258 AHA_3259 AHA_3259 AHA_3259 3674297 3675487 + penicillin-binding protein identified by match to protein family HMM PF00768%3B match to protein family HMM PF07943 gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3259 AHA_3260 AHA_3260 AHA_3260 3675780 3676043 + hypothetical protein identified by match to protein family HMM PF04359 gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3260 AHA_3261 AHA_3261 lipB lipB 3676140 3676844 + lipoate-protein ligase B lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3261 AHA_3262 AHA_3262 AHA_3262 3676841 3676933 + hypothetical protein gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3262 AHA_3263 AHA_3263 lipA lipA 3676930 3677895 + lipoyl synthase catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group gene gene3259 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3263 AHA_3264 AHA_3264 AHA_3264 3678047 3678556 + acetyltransferase identified by match to protein family HMM PF00583 gene gene3260 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3264 AHA_3265 AHA_3265 AHA_3265 3678695 3679264 + hypothetical protein identified by match to protein family HMM PF06821 gene gene3261 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3265 AHA_3266 AHA_3266 nqrE-2 nqrE-2 3679309 3679908 - Na(+)-translocating NADH-quinone reductase subunit E Part of the NQR complex which consists of NqrA%2C NqrB%2C NqrC%2C NqrD%2C NqrE and NqrF%3B NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions%2C coupled with the transport of Na(+) ions from the cytoplasm to the periplasm%3B NqrE is probably involved in the second step%2C the conversion of ubisemiquinone to ubiquinol. gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3266 AHA_3267 AHA_3267 AHA_3267 3680063 3680590 - hypothetical protein gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3267 AHA_3268 AHA_3268 AHA_3268 3680692 3681195 - acetyltransferase identified by match to protein family HMM PF00583 gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3268 AHA_3269 AHA_3269 AHA_3269 3681235 3682626 - methyltransferase identified by match to protein family HMM PF00376 gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3269 AHA_3270 AHA_3270 recJ recJ 3682566 3684296 - single-stranded-DNA-specific exonuclease RecJ identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644 gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3270 AHA_3271 AHA_3271 dsbC dsbC 3684262 3684978 - thiol:disulfide interchange protein DsbC identified by similarity to SP:P21892 gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3271 AHA_3272 AHA_3272 mscL mscL 3685239 3685646 + large-conductance mechanosensitive channel forms homopentamer%3B channel that opens in response to pressure or hypoosmotic shock gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3272 AHA_3273 AHA_3273 xerD xerD 3687378 3688277 - tyrosine recombinase XerD identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02225 gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3273 AHA_3274 AHA_3274 AHA_3274 3685975 3687381 + diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM PF02743%3B match to protein family HMM TIGR00254 gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3274 AHA_3275 AHA_3275 AHA_3275 3688465 3688983 + flavodoxin FldB An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3275 AHA_3276 AHA_3276 AHA_3276 3689296 3690696 + TldD protein identified by match to protein family HMM PF01523 gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3276 AHA_3277 AHA_3277 AHA_3277 3690696 3692036 + PmbA-like protein identified by match to protein family HMM PF01523 gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3277 AHA_3278 AHA_3278 AHA_3278 3692230 3692604 + glyoxalase identified by match to protein family HMM PF00903 gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3278 AHA_3279 AHA_3279 AHA_3279 3692680 3693606 - LysM domain-containing protein identified by match to protein family HMM PF03734 gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3279 AHA_3280 AHA_3280 AHA_3280 3693885 3695168 - glycosyl transferase family protein identified by match to protein family HMM PF00201%3B match to protein family HMM TIGR01426 gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3280 AHA_3281 AHA_3281 AHA_3281 3695168 3696043 - pyoverdine chromophore biosynthetic protein PvcB identified by similarity to GB:AAC21672.1%3B match to protein family HMM PF02668 gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3281 AHA_3282 AHA_3282 AHA_3282 3696054 3697028 - pyoverdine chromophore biosynthetic protein PvcA identified by similarity to GB:AAC21671.1%3B match to protein family HMM PF05141 gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3282 AHA_3283 AHA_3283 AHA_3283 3697584 3698420 - alpha/beta hydrolase identified by match to protein family HMM PF01734 gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3283 AHA_3284 AHA_3284 AHA_3284 3698541 3699923 + succinyl-CoA synthetase subunit alpha gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3284 AHA_3285 AHA_3285 AHA_3285 3699980 3703087 - protein Tprotein TrA identified by match to protein family HMM PF01568 gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3285 AHA_3286 AHA_3286 AHA_3286 3703087 3704193 - tetrathionate reductase subunit C identified by match to protein family HMM PF03916 gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3286 AHA_3287 AHA_3287 AHA_3287 3704183 3704971 - tetrathionate reductase subunit B identified by match to protein family HMM PF00037 gene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3287 AHA_3288 AHA_3288 AHA_3288 3705108 3707192 + two component system histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518 gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3288 AHA_3289 AHA_3289 AHA_3289 3707189 3707800 + transcriptional regulatory protein FixJ identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196 gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3289 AHA_3290 AHA_3290 lytS lytS 3708025 3709719 + sensor protein LytS identified by similarity to SP:P94513%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694 gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3290 AHA_3291 AHA_3291 AHA_3291 3709713 3710450 + two-component response-regulatory protein YehT unknown function%3B when overproduced it confers drug-resistance gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3291 AHA_3292 AHA_3292 AHA_3292 3710666 3712474 + carbon starvation protein A identified by match to protein family HMM PF02554 gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3292 AHA_3293 AHA_3293 pepE pepE 3712667 3713395 + peptidase E alpha-aspartyl dipeptidase%3B catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue%3B belongs to peptidase S51 family gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3293 AHA_3294 AHA_3294 fumC fumC 3713469 3714863 + fumarate hydratase class II family (does not require metal)%3B tetrameric enzyme%3B fumarase C%3B reversibly converts (S)-malate to fumarate and water%3B functions in the TCA cycle gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3294 AHA_3295 AHA_3295 AHA_3295 3714933 3715307 - hypothetical protein identified by match to protein family HMM PF06476 gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3295 AHA_3296 AHA_3296 AHA_3296 3715486 3715839 + DsrE/DsrF-like family protein identified by match to protein family HMM PF02635 gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3296 AHA_3297 AHA_3297 AHA_3297 3715974 3717056 + sensor histidine kinase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3297 AHA_3298 AHA_3298 AHA_3298 3717060 3718274 - major facilitator transporter identified by match to protein family HMM PF07690 gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3298 AHA_3299 AHA_3299 AHA_3299 3718404 3720542 - polynucleotide phosphorylase identified by match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726 gene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3299 AHA_3300 AHA_3300 rpsO rpsO 3720710 3720979 - 30S ribosomal protein S15 primary rRNA binding protein%3B helps nucleate assembly of 30S%3B binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA%3B autoregulates translation through interactions with the mRNA leader sequence gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3300 AHA_3301 AHA_3301 AHA_3301 3721124 3722122 - tRNA pseudouridine synthase B identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431 gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3301 AHA_3302 AHA_3302 rbfA rbfA 3722085 3722519 - ribosome-binding factor A associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3302 AHA_3303 AHA_3303 infB infB 3722575 3725268 - translation initiation factor IF-2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3303 AHA_3304 AHA_3304 nusA nusA 3725289 3726791 - transcription elongation factor NusA modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3304 AHA_3305 AHA_3305 AHA_3305 3726806 3727333 - hypothetical protein identified by match to protein family HMM PF02576 gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3305 AHA_3306 AHA_3306 AHA_3306 3727432 3727508 - tRNA-Met tRNA gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3306 AHA_3307 AHA_3307 AHA_3307 3727601 3727685 - tRNA-Leu tRNA gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3307 AHA_3308 AHA_3308 secG secG 3727693 3728019 - preprotein translocase subunit SecG identified by similarity to SP:P33582%3B match to protein family HMM PF03840%3B match to protein family HMM TIGR00810 gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3308 AHA_3309 AHA_3309 tpiA-2 tpiA-2 3728020 3728784 - triosephosphate isomerase Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3309 AHA_3310 AHA_3310 glmM glmM 3728916 3730250 - phosphoglucosamine mutase catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3310 AHA_3311 AHA_3311 folP folP 3730268 3731113 - dihydropteroate synthase identified by similarity to SP:P26282%3B match to protein family HMM PF00809%3B match to protein family HMM TIGR01496 gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3311 AHA_3312 AHA_3312 hflB hflB 3731176 3733125 - ATP-dependent metallopeptidase HflB identified by similarity to SP:P0AAI3%3B match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241 gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3312 AHA_3313 AHA_3313 rrmJ rrmJ 3733171 3733800 - ribosomal RNA large subunit methyltransferase J identified by match to protein family HMM PF01728 gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3313 AHA_3314 AHA_3314 AHA_3314 3733898 3734194 + hypothetical protein identified by match to protein family HMM PF01985%3B match to protein family HMM TIGR00253 gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3314 AHA_3315 AHA_3315 AHA_3315 3734299 3734892 + hypothetical protein gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3315 AHA_3316 AHA_3316 AHA_3316 3734940 3735416 - transcription elongation factor GreA identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462 gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3316 AHA_3317 AHA_3317 motB motB 3735571 3736470 - flagellar motor protein MotB with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine%3B Vibrio parahaemolyticus protein is associated with the polar flagella gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3317 AHA_3318 AHA_3318 AHA_3318 3736479 3737237 - chemotaxis protein PomA identified by match to protein family HMM PF01618 gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3318 AHA_3319 AHA_3319 AHA_3319 3737212 3737709 + exodeoxyribonuclease VII small subunit identified by match to protein family HMM PF02609%3B match to protein family HMM TIGR01280 gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3319 AHA_3320 AHA_3320 AHA_3320 3737710 3738600 + geranyltranstransferase identified by match to protein family HMM PF00348 gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3320 AHA_3321 AHA_3321 dxs dxs 3738622 3740487 + 1-deoxy-D-xylulose-5-phosphate synthase identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204 gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3321 AHA_3322 AHA_3322 AHA_3322 3740562 3741503 - dipeptide transport system permease DppC identified by match to protein family HMM PF00528 gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3322 AHA_3323 AHA_3323 AHA_3323 3741507 3742481 - dipeptide transport system permease DppB identified by match to protein family HMM PF00528 gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3323 AHA_3324 AHA_3324 AHA_3324 3742581 3744137 - peptide ABC transporter periplasmic peptide-binding protein identified by match to protein family HMM PF00496 gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3324 AHA_3325 AHA_3325 AHA_3325 3744208 3745932 - dipeptide transport ATP-binding protein DppD identified by match to protein family HMM PF00005 gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3325 AHA_3326 AHA_3326 AHA_3326 3746443 3746937 - phosphatidylglycerophosphatase A identified by match to protein family HMM PF04608 gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3326 AHA_3327 AHA_3327 thiL thiL 3746934 3747893 - thiamine-monophosphate kinase identified by match to protein family HMM PF02769%3B match to protein family HMM TIGR01379 gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3327 AHA_3328 AHA_3328 nusB nusB 3747954 3748367 - transcription antitermination factor NusB identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951 gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3328 AHA_3329 AHA_3329 ribE-2 ribE-2 3748382 3748966 - 6%2C7-dimethyl-8-ribityllumazine synthase identified by match to protein family HMM PF00885%3B match to protein family HMM TIGR00114 gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3329 AHA_3330 AHA_3330 AHA_3330 3749050 3750249 + tonin identified by match to protein family HMM PF00089 gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3330 AHA_3331 AHA_3331 AHA_3331 3750313 3751422 - riboflavin biosynthesis protein RibA identified by match to protein family HMM PF00925%3B match to protein family HMM PF00926%3B match to protein family HMM TIGR00506 gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3331 AHA_3332 AHA_3332 ribE-3 ribE-3 3751564 3752217 - riboflavin synthase subunit alpha catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine gene gene3328 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3332 AHA_3333 AHA_3333 ribD ribD 3752272 3753381 - riboflavin biosynthesis protein RibD identified by similarity to SP:P25539%3B match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00227%3B match to protein family HMM TIGR00326 gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3333 AHA_3334 AHA_3334 nrdR nrdR 3753478 3753927 - transcriptional regulator NrdR identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244 gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3334 AHA_3335 AHA_3335 AHA_3335 3754061 3754540 - hypothetical protein gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3335 AHA_3336 AHA_3336 glyA glyA 3754625 3755878 - serine hydroxymethyltransferase catalyzes the reaction of glycine with 5%2C10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3336 AHA_3337 AHA_3337 AHA_3337 3756365 3757027 + ADP-ribosylglycohydrolase family protein identified by match to protein family HMM PF04828 gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3337 AHA_3338 AHA_3338 AHA_3338 3757176 3757820 + chaperone protein TorD identified by match to protein family HMM PF06192 gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3338 AHA_3339 AHA_3339 AHA_3339 3757828 3758196 + hypothetical protein gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3339 AHA_3340 AHA_3340 AHA_3340 3758366 3759505 + hypothetical protein gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3340 AHA_3341 AHA_3341 AHA_3341 3759477 3760127 + hypothetical protein gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3341 AHA_3342 AHA_3342 AHA_3342 3760233 3762683 + protein MorA identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3342 AHA_3343 AHA_3343 AHA_3343 3762730 3763026 - hypothetical protein gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3343 AHA_3344 AHA_3344 acsA acsA 3763195 3765141 + acetyl-CoA synthetase Acs%3B catalyzes the conversion of acetate and CoA to acetyl-CoA gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3344 AHA_3345 AHA_3345 aroQ aroQ 3765408 3765857 + 3-dehydroquinate dehydratase catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3345 AHA_3346 AHA_3346 accB accB 3765894 3766349 + acetyl-CoA carboxylase%2C biotin carboxyl carrier protein identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR00531 gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3346 AHA_3347 AHA_3347 accC accC 3766365 3767705 + acetyl-CoA carboxylase%2C biotin carboxylase identified by match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM TIGR00514 gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3347 AHA_3348 AHA_3348 AHA_3348 3767833 3768096 + hypothetical protein gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3348 AHA_3349 AHA_3349 panF panF 3768086 3769564 + sodium/panthothenate symporter mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions%3B member of SSS family of sodium/solute symporters%3B the imported panthothenate is phosphorylated by panthothenate kinase gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3349 AHA_3350 AHA_3350 AHA_3350 3769642 3771069 + pts system N-acetylglucosamine-specific eiicba component (eiicba-nag)(eii-nag) identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378 gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3350 AHA_3351 AHA_3351 AHA_3351 3771072 3771920 - LysR family transcriptional activator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3351 AHA_3352 AHA_3352 AHA_3352 3772045 3773061 + zinc-containing alcohol dehydrogenase superfamily protein identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02817 gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3352 AHA_3353 AHA_3353 prmA prmA 3773577 3774455 + 50S ribosomal protein L11 methyltransferase methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3353 AHA_3354 AHA_3354 AHA_3354 3774651 3775628 + glyoxylate reductase identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3354 AHA_3355 AHA_3355 AHA_3355 3775702 3776265 + nodulation protein L identified by match to protein family HMM PF00132 gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3355 AHA_3356 AHA_3356 AHA_3356 3776814 3777362 - nitroreductase family protein identified by match to protein family HMM PF00881 gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3356 AHA_3357 AHA_3357 AHA_3357 3777469 3779484 - 2%2C4-dienoyl-CoA reductase identified by match to protein family HMM PF00070%3B match to protein family HMM PF00724%3B match to protein family HMM PF07992 gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3357 AHA_3358 AHA_3358 sppA sppA 3779795 3781639 + signal peptide peptidase SppA%2C 67K type identified by match to protein family HMM PF01343%3B match to protein family HMM TIGR00705%3B match to protein family HMM TIGR00706 gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3358 AHA_3359 AHA_3359 AHA_3359 3781707 3782264 - MutT/nudix family protein identified by match to protein family HMM PF00293 gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3359 AHA_3360 AHA_3360 AHA_3360 3782271 3783071 - hypothetical protein gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3360 AHA_3361 AHA_3361 gap-1 gap-1 3783326 3784699 + glyceraldehyde-3-phosphate dehydrogenase catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate%3B involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium%3B NAD and NADP dependent gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3361 AHA_3362 AHA_3362 AHA_3362 3784740 3785033 + general negative regulator of transcription subunit 1 identified by match to protein family HMM PF07023 gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3362 AHA_3363 AHA_3363 AHA_3363 3785130 3786788 - hypothetical protein gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3363 AHA_3364 AHA_3364 AHA_3364 3786797 3788911 - MoxR-like protein identified by match to protein family HMM PF07728 gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3364 AHA_3365 AHA_3365 ansA ansA 3789179 3790186 - asparaginase converts asparagine to aspartate and ammonia gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3365 AHA_3366 AHA_3366 gltS gltS 3790701 3791900 + sodium/glutamate symporter identified by similarity to SP:P19933%3B match to protein family HMM PF03616%3B match to protein family HMM TIGR00210 gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3366 AHA_3367 AHA_3367 AHA_3367 3792087 3793958 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743 gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3367 AHA_3368 AHA_3368 prfB prfB 3794212 3795310 + peptide chain release factor 2 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2%3B in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism%3B this protein is similar to release factor 1 gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3368 AHA_3369 AHA_3369 lysS lysS 3795335 3796870 + lysyl-tRNA synthetase class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3369 AHA_3370 AHA_3370 AHA_3370 3797000 3797803 - PhzF family phenazine biosynthesis protein identified by match to protein family HMM PF02567%3B match to protein family HMM TIGR00654 gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3370 AHA_3371 AHA_3371 AHA_3371 3797999 3799792 + sulfite reductase [NADPH] flavoprotein subunit alpha identified by match to protein family HMM PF00175%3B match to protein family HMM PF00258%3B match to protein family HMM PF00667%3B match to protein family HMM TIGR01931 gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3371 AHA_3372 AHA_3372 cysI cysI 3799792 3801504 + sulfite reductase subunit beta hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3372 AHA_3373 AHA_3373 cysH cysH 3801494 3802300 + phosphoadenosine phosphosulfate reductase identified by match to protein family HMM PF01507%3B match to protein family HMM TIGR00434%3B match to protein family HMM TIGR02057 gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3373 AHA_3374 AHA_3374 proX proX 3802393 3803394 - glycine betaine transporter periplasmic subunit with ProVW%2C part of the high-affinity transport system for the osmoprotectant glycine betaine gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3374 AHA_3375 AHA_3375 AHA_3375 3803391 3804542 - glycine betaine/L-proline ABC transporter permease identified by match to protein family HMM PF00528 gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3375 AHA_3376 AHA_3376 AHA_3376 3804539 3805735 - glycine betaine/L-proline ABC transporter ATP binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01186 gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3376 AHA_3377 AHA_3377 folA folA 3806237 3806728 - dihydrofolate reductase identified by similarity to SP:P00379%3B match to protein family HMM PF00186 gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3377 AHA_3378 AHA_3378 AHA_3378 3806753 3807220 - hypothetical protein gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3378 AHA_3379 AHA_3379 AHA_3379 3807217 3808014 - hypothetical protein identified by match to protein family HMM PF06738 gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3379 AHA_3380 AHA_3380 AHA_3380 3808250 3808591 - hypothetical protein gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3380 AHA_3381 AHA_3381 mogA mogA 3808990 3809520 + molybdenum cofactor biosynthesis protein MogA forms a trimer%3B related to eukaryotic protein gephyrin%3B functions during molybdenum cofactor biosynthesis gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3381 AHA_3382 AHA_3382 AHA_3382 3810055 3811281 - 3-oxoacyl-ACP synthase FabB%3B beta-ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3382 AHA_3383 AHA_3383 fabG fabG 3811278 3812003 - 3-ketoacyl-ACP reductase Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3383 AHA_3384 AHA_3384 AHA_3384 3812013 3812474 - thioester dehydrase family protein identified by match to protein family HMM PF07977 gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3384 AHA_3385 AHA_3385 AHA_3385 3812467 3813651 - 3-oxoacyl-ACP synthase identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801 gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3385 AHA_3386 AHA_3386 AHA_3386 3813648 3814205 - hypothetical protein gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3386 AHA_3387 AHA_3387 AHA_3387 3814202 3816562 - hypothetical protein gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3387 AHA_3388 AHA_3388 AHA_3388 3816613 3817227 - hypothetical protein gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3388 AHA_3389 AHA_3389 AHA_3389 3817224 3817649 - 4-hydroxybenzoyl-CoA thioesterase gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3389 AHA_3390 AHA_3390 AHA_3390 3817678 3819240 - phenylalanine and histidine ammonia-lyase identified by match to protein family HMM PF00221 gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3390 AHA_3391 AHA_3391 AHA_3391 3819227 3820930 - glycosyl transferase family protein identified by match to protein family HMM PF00535 gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3391 AHA_3392 AHA_3392 AHA_3392 3820927 3821298 - (3R)-hydroxymyristoyl-ACP dehydratase identified by match to protein family HMM PF07977 gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3392 AHA_3393 AHA_3393 AHA_3393 3821282 3822652 - acyl-CoA synthetase identified by match to protein family HMM PF00501 gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3393 AHA_3394 AHA_3394 AHA_3394 3822649 3823287 - DNA gyrase subunit B gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3394 AHA_3395 AHA_3395 AHA_3395 3823256 3823504 - acyl carrier protein carries the fatty acid chain in fatty acid biosynthesis gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3395 AHA_3396 AHA_3396 AHA_3396 3823508 3823795 - acyl carrier protein gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3396 AHA_3397 AHA_3397 AHA_3397 3823792 3824550 - 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553 gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3397 AHA_3398 AHA_3398 AHA_3398 3824535 3825248 - beta-ketoacyl synthase domain-containing protein gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3398 AHA_3399 AHA_3399 AHA_3399 3825425 3825889 + hypothetical protein gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3399 AHA_3400 AHA_3400 AHA_3400 3825908 3826984 + SAM-dependent methyltransferase identified by match to protein family HMM PF00891 gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3400 AHA_3401 AHA_3401 AHA_3401 3827032 3827247 + hypothetical protein gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3401 AHA_3402 AHA_3402 AHA_3402 3827293 3828048 - DNA/RNA non-specific endonuclease identified by match to protein family HMM PF01223 gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3402 AHA_3403 AHA_3403 AHA_3403 3828292 3829269 - cytochrome c551 peroxidase identified by match to protein family HMM PF00034%3B match to protein family HMM PF03150 gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3403 AHA_3404 AHA_3404 AHA_3404 3829719 3830444 + carbonic anhydrase identified by match to protein family HMM PF00194 gene gene3400 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3404 AHA_3405 AHA_3405 AHA_3405 3830519 3831427 - indigoidine synthase A like protein identified by match to protein family HMM PF04227 gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3405 AHA_3406 AHA_3406 AHA_3406 3831421 3832356 - PfkB family kinase identified by match to protein family HMM PF00294 gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3406 AHA_3407 AHA_3407 AHA_3407 3832658 3833170 - nitrite reductase [NAD(P)H] large subunit identified by match to protein family HMM PF00355%3B match to protein family HMM TIGR02378 gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3407 AHA_3408 AHA_3408 nirB-1 nirB-1 3833218 3835803 - nitrite reductase [NAD(P)H]%2C large subunit identified by match to protein family HMM PF00070%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM PF04324%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR02374 gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3408 AHA_3409 AHA_3409 AHA_3409 3835829 3836650 - nitrate transport ATP-binding protein NrtC identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01184 gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3409 AHA_3410 AHA_3410 AHA_3410 3836682 3837626 - nitrate transporter component identified by match to protein family HMM PF00528 gene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3410 AHA_3411 AHA_3411 AHA_3411 3837641 3839140 - nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein gene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3411 AHA_3412 AHA_3412 AHA_3412 3839437 3840021 - response regulator NasT identified by match to protein family HMM PF03861 gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3412 AHA_3413 AHA_3413 cobA cobA 3840161 3840919 - uroporphyrin-III C-methyltransferase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469 gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3413 AHA_3414 AHA_3414 AHA_3414 3841089 3843725 - nitrate reductase identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04324%3B match to protein family HMM PF04879 gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3414 AHA_3415 AHA_3415 AHA_3415 3844029 3844535 + 23S rRNA methyltransferase identified by match to protein family HMM PF00588 gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3415 AHA_3416 AHA_3416 AHA_3416 3844525 3844641 + RNA methyltransferase gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3416 AHA_3417 AHA_3417 AHA_3417 3844801 3845541 - hypothetical protein gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3417 AHA_3418 AHA_3418 AHA_3418 3845728 3846159 + universal stress protein identified by match to protein family HMM PF00582 gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3418 AHA_3419 AHA_3419 AHA_3419 3846229 3846864 - hypothetical protein gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3419 AHA_3420 AHA_3420 proA proA 3847018 3848271 - gamma-glutamyl phosphate reductase Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3420 AHA_3421 AHA_3421 proB proB 3848364 3849467 - gamma-glutamyl kinase catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3421 AHA_3422 AHA_3422 crl crl 3849628 3850020 - DNA-binding transcriptional regulator Crl involved in the expression of csgBA which is involved in curli formation%3B interacts with sigmaS gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3422 AHA_3423 AHA_3423 frsA frsA 3850082 3851350 - fermentation/respiration switch protein forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc%3B FrsA may promote fermentation gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3423 AHA_3424 AHA_3424 gpt gpt 3851470 3851937 - xanthine-guanine phosphoribosyltransferase catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3424 AHA_3425 AHA_3425 AHA_3425 3852374 3852487 - hypothetical protein gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3425 AHA_3426 AHA_3426 pepD pepD 3852857 3854308 + aminoacyl-histidine dipeptidase identified by similarity to SP:P15288%3B match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01893 gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3426 AHA_3427 AHA_3427 AHA_3427 3854650 3854769 + hypothetical protein gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3427 AHA_3428 AHA_3428 AHA_3428 3854994 3855995 - oligopeptide transport ATP-binding protein AppF identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3428 AHA_3429 AHA_3429 AHA_3429 3855992 3857035 - oligopeptide transport ATP-binding protein OppD identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727 gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3429 AHA_3430 AHA_3430 AHA_3430 3857061 3858878 - oligopeptide-binding protein OppA identified by match to protein family HMM PF00496 gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3430 AHA_3431 AHA_3431 AHA_3431 3858961 3859998 - inner membrane ABC transporter permease YejE identified by match to protein family HMM PF00528 gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3431 AHA_3432 AHA_3432 AHA_3432 3860001 3861026 - oligopeptide transport system permease OppB identified by match to protein family HMM PF00528 gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3432 AHA_3433 AHA_3433 AHA_3433 3861765 3864320 + outer membrane protein identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715 gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3433 AHA_3434 AHA_3434 AHA_3434 3864431 3865195 + TonB system biopolymer transport component gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3434 AHA_3435 AHA_3435 AHA_3435 3865192 3866565 + hypothetical protein identified by match to protein family HMM PF01618 gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3435 AHA_3436 AHA_3436 AHA_3436 3866576 3867103 + TonB system transport protein ExbB2 identified by match to protein family HMM PF01618 gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3436 AHA_3437 AHA_3437 AHA_3437 3867171 3867578 + biopolymer transport exbD2 protein identified by match to protein family HMM PF02472 gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3437 AHA_3438 AHA_3438 AHA_3438 3867712 3868230 + periplasmic protein TonB2 identified by match to protein family HMM TIGR01352 gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3438 AHA_3439 AHA_3439 AHA_3439 3868242 3869477 + hypothetical protein identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719 gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3439 AHA_3440 AHA_3440 AHA_3440 3869902 3872904 - chitodextrinase identified by match to protein family HMM PF00704%3B match to protein family HMM PF02839%3B match to protein family HMM PF06483 gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3440 AHA_3441 AHA_3441 AHA_3441 3873435 3875579 + nuclease identified by match to protein family HMM PF03372 gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3441 AHA_3442 AHA_3442 AHA_3442 3875715 3875790 - tRNA-Ala tRNA gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3442 AHA_3443 AHA_3443 AHA_3443 3875825 3875900 - tRNA-Ala tRNA gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3443 AHA_3444 AHA_3444 AHA_3444 3875949 3876024 - tRNA-Ala tRNA gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3444 AHA_3445 AHA_3445 AHA_3445 3876088 3876163 - tRNA-Ala tRNA gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3445 AHA_3446 AHA_3446 AHA_3446 3876192 3876267 - tRNA-Ala tRNA gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3446 AHA_3447 AHA_3447 gltX gltX 3876505 3877920 - glutamyl-tRNA synthetase Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3447 AHA_3448 AHA_3448 AHA_3448 3878112 3880283 + methyl-accepting chemotaxis transducer identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3448 AHA_3449 AHA_3449 AHA_3449 3880382 3881050 + opacity-associated protein A identified by match to protein family HMM PF04225 gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3449 AHA_3450 AHA_3450 AHA_3450 3881323 3881532 + hypothetical protein identified by match to protein family HMM PF00313 gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3450 AHA_3451 AHA_3451 AHA_3451 3881802 3881881 - tRNA-OTHER tRNA gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3451 AHA_3452 AHA_3452 AHA_3452 3881945 3882020 - tRNA-Gly tRNA gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3452 AHA_3453 AHA_3453 AHA_3453 3882045 3882120 - tRNA-Gly tRNA gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3453 AHA_3454 AHA_3454 AHA_3454 3882145 3882220 - tRNA-Gly tRNA gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3454 AHA_3455 AHA_3455 AHA_3455 3882245 3882320 - tRNA-Gly tRNA gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3455 AHA_3456 AHA_3456 AHA_3456 3882345 3882420 - tRNA-Gly tRNA gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3456 AHA_3457 AHA_3457 AHA_3457 3882454 3882529 - tRNA-Gly tRNA gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3457 AHA_3458 AHA_3458 AHA_3458 3882555 3882630 - tRNA-Gly tRNA gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3458 AHA_3459 AHA_3459 orn orn 3882808 3883353 - oligoribonuclease 3'-5' exoribonuclease specific for small oligoribonuclotides gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3459 AHA_3460 AHA_3460 rsgA rsgA 3883400 3884479 + ribosome-associated GTPase EngC%3B RsgA%3B CpgA%3B circularly permuted GTPase%3B ribosome small subunit-dependent GTPase A%3B has the pattern G4-G1-G3 as opposed to other GTPases%3B interacts strongly with 30S ribosome which stimulates GTPase activity gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3460 AHA_3461 AHA_3461 psd psd 3884385 3885380 + phosphatidylserine decarboxylase identified by match to protein family HMM PF02666%3B match to protein family HMM TIGR00163 gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3461 AHA_3462 AHA_3462 AHA_3462 3885377 3885628 + hypothetical protein identified by similarity to GB:CAG21999.1 gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3462 AHA_3463 AHA_3463 AHA_3463 3885633 3885884 + hypothetical protein gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3463 AHA_3464 AHA_3464 AHA_3464 3885887 3886285 + hypothetical protein gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3464 AHA_3465 AHA_3465 AHA_3465 3886398 3886967 - hypothetical protein identified by match to protein family HMM PF04224 gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3465 AHA_3466 AHA_3466 AHA_3466 3887010 3887444 - carboxymuconolactone decarboxylase family protein identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778 gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3466 AHA_3467 AHA_3467 AHA_3467 3887567 3888370 + AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3467 AHA_3468 AHA_3468 AHA_3468 3888431 3888889 - hypothetical protein gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3468 AHA_3469 AHA_3469 AHA_3469 3889097 3891070 + sensory box protein identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3469 AHA_3470 AHA_3470 AHA_3470 3891139 3891645 - hypothetical protein identified by match to protein family HMM PF06877 gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3470 AHA_3471 AHA_3471 AHA_3471 3891909 3894185 + immune inhibitor A identified by match to protein family HMM PF05547 gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3471 AHA_3472 AHA_3472 AHA_3472 3894370 3894445 + tRNA-Phe tRNA gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3472 AHA_3473 AHA_3473 AHA_3473 3894450 3894525 + tRNA-Asn tRNA gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3473 AHA_3474 AHA_3474 AHA_3474 3894569 3894703 - hypothetical protein gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3474 AHA_3475 AHA_3475 AHA_3475 3894929 3896206 + proline iminopeptidase identified by match to protein family HMM PF00561 gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3475 AHA_3476 AHA_3476 AHA_3476 3896306 3899866 + ABC transporter ATP-binding protein identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664 gene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3476 AHA_3477 AHA_3477 AHA_3477 3899922 3900164 - hypothetical protein identified by match to protein family HMM PF06004 gene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3477 AHA_3478 AHA_3478 AHA_3478 3900246 3901421 - extracellular alkaline serine protease identified by match to protein family HMM PF00082 gene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3478 AHA_3479 AHA_3479 AHA_3479 3901541 3902833 - thiosulfate sulfurtransferase gene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3479 AHA_3480 AHA_3480 AHA_3480 3902862 3903794 - glutaminase catalyzes the formation of glutamate from glutamine gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3480 AHA_3481 AHA_3481 AHA_3481 3903907 3904239 - hypothetical protein identified by match to protein family HMM PF04320 gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3481 AHA_3482 AHA_3482 trmB trmB 3904254 3904949 - tRNA (guanine-N(7)-)-methyltransferase tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3482 AHA_3483 AHA_3483 AHA_3483 3905316 3906383 + aminopeptidase identified by match to protein family HMM PF01546%3B match to protein family HMM PF04389 gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3483 AHA_3484 AHA_3484 AHA_3484 3906566 3907747 + aminotransferase%2C classes I and II identified by match to protein family HMM PF00155 gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3484 AHA_3485 AHA_3485 AHA_3485 3907812 3909344 - EAL domain-containing protein identified by match to protein family HMM PF00563 gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3485 AHA_3486 AHA_3486 AHA_3486 3909647 3910552 + hypothetical protein identified by match to protein family HMM PF01370%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01777 gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3486 AHA_3487 AHA_3487 AHA_3487 3910646 3913093 - ABC transporter permease identified by match to protein family HMM PF02687 gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3487 AHA_3488 AHA_3488 AHA_3488 3913090 3913815 - ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3488 AHA_3489 AHA_3489 AHA_3489 3913814 3914413 + acyl-CoA thioesterase identified by match to protein family HMM PF00657 gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3489 AHA_3490 AHA_3490 AHA_3490 3914497 3915441 - chemotaxis protein CheV identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584 gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3490 AHA_3491 AHA_3491 AHA_3491 3915737 3930880 - hypothetical protein identified by match to protein family HMM PF00092%3B match to protein family HMM PF00353%3B match to protein family HMM TIGR01965 gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3491 AHA_3492 AHA_3492 AHA_3492 3931109 3932770 - hypothetical protein identified by match to protein family HMM PF02080%3B match to protein family HMM PF06826%3B match to protein family HMM TIGR01625 gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3492 AHA_3493 AHA_3493 AHA_3493 3932889 3933524 - hemolysin III identified by match to protein family HMM PF03006%3B match to protein family HMM TIGR01065 gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3493 AHA_3494 AHA_3494 AHA_3494 3933748 3935253 + group II decarboxylase identified by match to protein family HMM PF00282 gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3494 AHA_3495 AHA_3495 ispZ ispZ 3935358 3935909 + intracellular septation protein A Involved in cell division%3B probably involved in intracellular septation gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3495 AHA_3496 AHA_3496 AHA_3496 3935935 3936231 + hypothetical protein unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3496 AHA_3497 AHA_3497 cysQ-2 cysQ-2 3936313 3937104 - 3'(2')%2C5'-bisphosphate nucleotidase identified by match to protein family HMM PF00459%3B match to protein family HMM TIGR01331 gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3497 AHA_3498 AHA_3498 AHA_3498 3937251 3937571 + ComEA protein identified by match to protein family HMM PF00633%3B match to protein family HMM TIGR00426 gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3498 AHA_3499 AHA_3499 galU galU 3937685 3938578 + UTP-glucose-1-phosphate uridylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01099 gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3499 AHA_3500 AHA_3500 AHA_3500 3938792 3940189 + dipeptide/tripeptide permease identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924 gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3500 AHA_3501 AHA_3501 AHA_3501 3940263 3941234 - response regulator receiver domain-containing protein identified by match to protein family HMM PF00072 gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3501 AHA_3502 AHA_3502 AHA_3502 3941560 3943155 - hypothetical protein gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3502 AHA_3503 AHA_3503 AHA_3503 3941575 3942252 + hypothetical protein gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3503 AHA_3504 AHA_3504 AHA_3504 3942322 3943176 + DNA replication protein gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3504 AHA_3505 AHA_3505 AHA_3505 3943305 3943940 + NAD-dependent epimerase/dehydratase family protein identified by match to protein family HMM PF01370 gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3505 AHA_3506 AHA_3506 AHA_3506 3944051 3945247 - multidrug ABC transporter permease identified by match to protein family HMM PF01061 gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3506 AHA_3507 AHA_3507 AHA_3507 3945351 3946487 - multidrug ABC transporter permease gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3507 AHA_3508 AHA_3508 AHA_3508 3946487 3947491 - membrane-fusion protein identified by match to protein family HMM PF00529 gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3508 AHA_3509 AHA_3509 AHA_3509 3947565 3948923 - outer membrane efflux protein identified by match to protein family HMM PF02321 gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3509 AHA_3510 AHA_3510 AHA_3510 3949262 3950227 + tRNA-dihydrouridine synthase B identified by match to protein family HMM PF01207%3B match to protein family HMM TIGR00737 gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3510 AHA_3511 AHA_3511 fis fis 3950253 3950549 + DNA-binding protein Fis Stimulates excision of phage lambda%3B affects Mu development%3B acts as an activator of rRNA and iRNA transcription gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3511 AHA_3512 AHA_3512 AHA_3512 3950619 3951251 - amino acid transporter LysE identified by match to protein family HMM PF01810 gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3512 AHA_3513 AHA_3513 rrfG rrfG 3951574 3951693 - 5S ribosomal RNA rRNA gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3513 AHA_3514 AHA_3514 rrlG rrlG 3951808 3954696 - 23S ribosomal RNA rRNA gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3514 AHA_3515 AHA_3515 AHA_3515 3954933 3955008 - tRNA-Glu tRNA gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3515 AHA_3516 AHA_3516 rrsG rrsG 3955208 3956757 - 16S ribosomal RNA rRNA gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3516 AHA_3517 AHA_3517 AHA_3517 3957236 3957640 - iron-sulfur cluster insertion protein ErpA essential respiratory protein A%3B may be involved in the transfer of iron-sulfur clusters%3B essential for growth using oxygen or alternate electron acceptors gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3517 AHA_3518 AHA_3518 AHA_3518 3957677 3958372 - hypothetical protein gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3518 AHA_3519 AHA_3519 AHA_3519 3958459 3959853 - chloride channel protein Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3519 AHA_3520 AHA_3520 hemL hemL 3960076 3961362 + glutamate-1-semialdehyde aminotransferase Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3520 AHA_3521 AHA_3521 AHA_3521 3961572 3962387 + hypothetical protein gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3521 AHA_3522 AHA_3522 AHA_3522 3962448 3963350 - hypothetical protein gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3522 AHA_3523 AHA_3523 AHA_3523 3963607 3964329 - PAP2 family protein identified by match to protein family HMM PF01569 gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3523 AHA_3524 AHA_3524 AHA_3524 3964517 3965032 + hypothetical protein gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3524 AHA_3525 AHA_3525 AHA_3525 3965108 3966688 - response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966 gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3525 AHA_3526 AHA_3526 AHA_3526 3966803 3967684 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3526 AHA_3527 AHA_3527 AHA_3527 3967841 3968305 + SMR family multidrug efflux pump identified by match to protein family HMM PF00893 gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3527 AHA_3528 AHA_3528 AHA_3528 3968293 3968613 + SMR family multidrug efflux pump identified by match to protein family HMM PF00893 gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3528 AHA_3529 AHA_3529 AHA_3529 3968713 3969114 - glyoxylase identified by match to protein family HMM PF00903 gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3529 AHA_3530 AHA_3530 mrcB mrcB 3969157 3971478 - penicillin-binding protein 1B identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02071 gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3530 AHA_3531 AHA_3531 hrpB hrpB 3971730 3974900 - ATP-dependent helicase HrpB identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04408%3B match to protein family HMM TIGR01970 gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3531 AHA_3532 AHA_3532 AHA_3532 3974322 3974861 + 2'-5' RNA ligase identified by match to protein family HMM PF02834%3B match to protein family HMM TIGR02258 gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3532 AHA_3533 AHA_3533 sfsA sfsA 3974904 3975647 + sugar fermentation stimulation protein A Regulatory factor involved in maltose metabolism gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3533 AHA_3534 AHA_3534 dksA dksA 3975767 3976216 + RNA polymerase-binding protein DksA identified by match to protein family HMM PF01258%3B match to protein family HMM TIGR02420 gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3534 AHA_3535 AHA_3535 AHA_3535 3976336 3977238 + glutamyl-Q tRNA(Asp) synthetase identified by match to protein family HMM PF00749 gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3535 AHA_3536 AHA_3536 AHA_3536 3977560 3979059 + poly(A) polymerase identified by match to protein family HMM PF01743%3B match to protein family HMM TIGR01942 gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3536 AHA_3537 AHA_3537 folK-1 folK-1 3979071 3979580 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase identified by similarity to SP:P26281%3B match to protein family HMM PF01288%3B match to protein family HMM TIGR01498 gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3537 AHA_3538 AHA_3538 panB panB 3979577 3980371 + 3-methyl-2-oxobutanoate hydroxymethyltransferase catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3538 AHA_3539 AHA_3539 panC panC 3980559 3981416 + pantoate--beta-alanine ligase catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine gene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3539 AHA_3540 AHA_3540 AHA_3540 3981481 3982008 - hypothetical protein identified by match to protein family HMM PF00581 gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3540 AHA_3541 AHA_3541 AHA_3541 3982010 3982450 - methylamine utilization protein-like protein gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3541 AHA_3542 AHA_3542 AHA_3542 3982752 3983534 - activator of (R)-2-hydroxyglutaryl-CoA dehydratase identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241 gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3542 AHA_3543 AHA_3543 AHA_3543 3983544 3984620 - 2-hydroxyglutaryl-CoA dehydratase subunit D identified by match to protein family HMM PF06050 gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3543 AHA_3544 AHA_3544 AHA_3544 3984930 3985703 - ABC transporter permease identified by match to protein family HMM PF01061 gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3544 AHA_3545 AHA_3545 AHA_3545 3985700 3986617 - ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3545 AHA_3546 AHA_3546 hpt hpt 3986729 3987259 - hypoxanthine phosphoribosyltransferase identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01203 gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3546 AHA_3547 AHA_3547 AHA_3547 3987460 3988074 + LitR%2C transcriptional regulator identified by match to protein family HMM PF00440 gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3547 AHA_3548 AHA_3548 AHA_3548 3988149 3988760 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified by match to protein family HMM PF02441%3B match to protein family HMM TIGR00421 gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3548 AHA_3549 AHA_3549 mpl mpl 3988757 3990127 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01081 gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3549 AHA_3550 AHA_3550 ppa ppa 3990306 3990836 + inorganic pyrophosphatase catalyzes the hydrolysis of pyrophosphate to phosphate gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3550 AHA_3551 AHA_3551 AHA_3551 3990862 3991170 - hypothetical protein gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3551 AHA_3552 AHA_3552 AHA_3552 3991145 3991243 + hypothetical protein gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3552 AHA_3553 AHA_3553 AHA_3553 3991349 3992227 + hypothetical protein gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3553 AHA_3554 AHA_3554 AHA_3554 3992485 3993027 + hypothetical protein identified by match to protein family HMM TIGR01626 gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3554 AHA_3555 AHA_3555 AHA_3555 3993072 3993362 + hypothetical protein gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3555 AHA_3556 AHA_3556 AHA_3556 3993398 3993964 + hypothetical protein gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3556 AHA_3557 AHA_3557 AHA_3557 3993969 3994658 + ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3557 AHA_3558 AHA_3558 AHA_3558 3994652 3995899 + peptide ABC transporter permease identified by match to protein family HMM PF02687 gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3558 AHA_3559 AHA_3559 AHA_3559 3995929 3996408 + hypothetical protein gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3559 AHA_3560 AHA_3560 AHA_3560 3996641 3997414 + hypothetical protein gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3560 AHA_3561 AHA_3561 AHA_3561 3997678 3999306 + aerotaxis receptor Aer identified by similarity to GB:AAD22405.1%3B match to protein family HMM PF00015%3B match to protein family HMM TIGR00229 gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3561 AHA_3562 AHA_3562 AHA_3562 4000360 4001250 + alpha/beta hydrolase gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3562 AHA_3563 AHA_3563 AHA_3563 4001682 4003133 + hypothetical protein gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3563 AHA_3564 AHA_3564 cysC cysC 4003214 4003807 - adenylylsulfate kinase identified by match to protein family HMM PF01583%3B match to protein family HMM TIGR00455 gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3564 AHA_3565 AHA_3565 AHA_3565 4003954 4005678 - divalent anion:sodium symporter family protein identified by match to protein family HMM PF02080%3B match to protein family HMM PF03600 gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3565 AHA_3566 AHA_3566 cysN cysN 4005683 4007110 - sulfate adenylyltransferase may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3566 AHA_3567 AHA_3567 AHA_3567 4007135 4008043 - sulfate adenylyltransferase with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3567 AHA_3568 AHA_3568 AHA_3568 4008152 4009564 - siroheme synthase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470 gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3568 AHA_3569 AHA_3569 AHA_3569 4009762 4010682 + membrane protease subunit identified by match to protein family HMM PF01145 gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3569 AHA_3570 AHA_3570 AHA_3570 4010679 4011134 + nodulation efficiency family protein identified by match to protein family HMM PF01957 gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3570 AHA_3571 AHA_3571 AHA_3571 4011217 4011627 - hypothetical protein identified by match to protein family HMM PF00571 gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3571 AHA_3572 AHA_3572 AHA_3572 4011781 4013691 + ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3572 AHA_3573 AHA_3573 AHA_3573 4013702 4014145 + hypothetical protein gene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3573 AHA_3574 AHA_3574 AHA_3574 4014139 4014993 + protein involved in external DNA uptake identified by match to protein family HMM PF04378 gene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3574 AHA_3575 AHA_3575 AHA_3575 4015044 4015973 - transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3575 AHA_3576 AHA_3576 AHA_3576 4016083 4016682 + ACP phosphodieterase identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358 gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3576 AHA_3577 AHA_3577 AHA_3577 4016779 4017054 - hypothetical protein gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3577 AHA_3578 AHA_3578 AHA_3578 4017172 4017534 + hypothetical protein gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3578 AHA_3579 AHA_3579 AHA_3579 4017870 4018298 + glyoxalase identified by match to protein family HMM PF00903 gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3579 AHA_3580 AHA_3580 AHA_3580 4018374 4020203 + ATP-dependent DNA helicase RecG identified by match to protein family HMM PF04326 gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3580 AHA_3581 AHA_3581 AHA_3581 4020513 4021343 + hydrolase identified by match to protein family HMM PF00561 gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3581 AHA_3582 AHA_3582 AHA_3582 4021377 4022486 - hypothetical protein gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3582 AHA_3583 AHA_3583 putP putP 4022787 4024304 - sodium/proline symporter identified by match to protein family HMM PF00474%3B match to protein family HMM TIGR00813%3B match to protein family HMM TIGR02121 gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3583 AHA_3584 AHA_3584 AHA_3584 4024593 4025627 - LysM domain-containing protein identified by match to protein family HMM PF03734 gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3584 AHA_3585 AHA_3585 AHA_3585 4025707 4026948 - mechanosensitive ion channel identified by match to protein family HMM PF00924 gene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3585 AHA_3586 AHA_3586 ackA-2 ackA-2 4027082 4028281 - acetate kinase identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016 gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3586 AHA_3587 AHA_3587 AHA_3587 4028456 4028926 - hypothetical protein identified by similarity to GB:CAG73302.1%3B match to protein family HMM PF04074%3B match to protein family HMM TIGR00022 gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3587 AHA_3588 AHA_3588 AHA_3588 4029237 4030343 - acyltransferase identified by match to protein family HMM PF01553 gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3588 AHA_3589 AHA_3589 AHA_3589 4030504 4032153 - multicopper oxidase laccase%3B copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3589 AHA_3590 AHA_3590 AHA_3590 4032410 4033102 - aspartate racemase identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00035 gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3590 AHA_3591 AHA_3591 AHA_3591 4033247 4033837 - lysine exporter protein identified by match to protein family HMM PF01810 gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3591 AHA_3592 AHA_3592 AHA_3592 4033899 4036052 + GntR family transcriptional regulator identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392 gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3592 AHA_3593 AHA_3593 AHA_3593 4036095 4036559 + hypothetical protein gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3593 AHA_3594 AHA_3594 AHA_3594 4036620 4038719 + hypothetical protein gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3594 AHA_3595 AHA_3595 AHA_3595 4039411 4041048 - hypothetical protein gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3595 AHA_3596 AHA_3596 AHA_3596 4038689 4039414 + hypothetical protein gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3596 AHA_3597 AHA_3597 AHA_3597 4039525 4041150 + hypothetical protein gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3597 AHA_3598 AHA_3598 AHA_3598 4041171 4042484 - sodium-dependent symporter family protein identified by match to protein family HMM PF00209 gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3598 AHA_3599 AHA_3599 AHA_3599 4042708 4043655 + hypothetical protein gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3599 AHA_3600 AHA_3600 AHA_3600 4043656 4044969 - sodium-dependent transporter identified by match to protein family HMM PF00209 gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3600 AHA_3601 AHA_3601 AHA_3601 4045184 4046023 - isopenicillin N synthase identified by match to protein family HMM PF03171 gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3601 AHA_3602 AHA_3602 AHA_3602 4046232 4046795 + DNA repair ATPase gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3602 AHA_3603 AHA_3603 AHA_3603 4046848 4047669 - phosphatase YbhA identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484 gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3603 AHA_3604 AHA_3604 AHA_3604 4047972 4049213 - MFS family transporter identified by match to protein family HMM PF07690 gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3604 AHA_3605 AHA_3605 AHA_3605 4049380 4050000 + hypothetical protein gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3605 AHA_3606 AHA_3606 AHA_3606 4050309 4050785 + bkd operon transcriptional regulator identified by match to protein family HMM PF01037 gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3606 AHA_3607 AHA_3607 AHA_3607 4050875 4051192 - hypothetical protein gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3607 AHA_3608 AHA_3608 AHA_3608 4051338 4051565 - hypothetical protein gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3608 AHA_3609 AHA_3609 AHA_3609 4051599 4052093 - MarR family transcriptional regulator identified by match to protein family HMM PF01047 gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3609 AHA_3610 AHA_3610 AHA_3610 4052137 4052613 + organic hydroperoxide reductase identified by match to protein family HMM PF02566 gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3610 AHA_3611 AHA_3611 AHA_3611 4052696 4053700 + NADP-dependent oxidoreductase p1 identified by match to protein family HMM PF00107 gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3611 AHA_3612 AHA_3612 AHA_3612 4053807 4054250 + nudix hydrolase 1 identified by match to protein family HMM PF00293 gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3612 AHA_3613 AHA_3613 AHA_3613 4054477 4055628 + chromate transport protein ChrA identified by match to protein family HMM PF02417%3B match to protein family HMM TIGR00937 gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3613 AHA_3614 AHA_3614 msrB msrB 4055709 4056101 - methionine-R-sulfoxide reductase identified by match to protein family HMM PF01641%3B match to protein family HMM TIGR00357 gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3614 AHA_3615 AHA_3615 glgX-2 glgX-2 4056158 4058299 - glycogen debranching protein GlgX identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02100 gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3615 AHA_3616 AHA_3616 glgB glgB 4058299 4060476 - glycogen branching protein catalyzes the transfer of a segment of a 1%2C4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3616 AHA_3617 AHA_3617 malQ malQ 4060559 4062835 - 4-alpha-glucanotransferase amylomaltase%3B acts to release glucose from maltodextrins gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3617 AHA_3618 AHA_3618 gap-2 gap-2 4063095 4064090 + glyceraldehyde-3-phosphate dehydrogenase identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534 gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3618 AHA_3619 AHA_3619 AHA_3619 4064206 4065072 + aldose 1-epimerase identified by match to protein family HMM PF01263 gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3619 AHA_3620 AHA_3620 nadA nadA 4065142 4066176 - quinolinate synthetase 3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3620 AHA_3621 AHA_3621 AHA_3621 4066356 4068461 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3621 AHA_3622 AHA_3622 AHA_3622 4068512 4068587 - tRNA-Val tRNA gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3622 AHA_3623 AHA_3623 AHA_3623 4068605 4068680 - tRNA-Lys tRNA gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3623 AHA_3624 AHA_3624 AHA_3624 4068703 4068778 - tRNA-Val tRNA gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3624 AHA_3625 AHA_3625 AHA_3625 4068796 4068871 - tRNA-Lys tRNA gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3625 AHA_3626 AHA_3626 AHA_3626 4068895 4068970 - tRNA-Val tRNA gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3626 AHA_3627 AHA_3627 AHA_3627 4068987 4069062 - tRNA-Lys tRNA gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3627 AHA_3628 AHA_3628 AHA_3628 4069087 4069162 - tRNA-Val tRNA gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3628 AHA_3629 AHA_3629 AHA_3629 4069179 4069254 - tRNA-Lys tRNA gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3629 AHA_3630 AHA_3630 AHA_3630 4069277 4069352 - tRNA-Val tRNA gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3630 AHA_3631 AHA_3631 AHA_3631 4069370 4069445 - tRNA-Lys tRNA gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3631 AHA_3632 AHA_3632 AHA_3632 4069469 4069544 - tRNA-Val tRNA gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3632 AHA_3633 AHA_3633 AHA_3633 4069566 4069641 - tRNA-Lys tRNA gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3633 AHA_3634 AHA_3634 AHA_3634 4069690 4069765 - tRNA-Val tRNA gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3634 AHA_3635 AHA_3635 AHA_3635 4069797 4069872 - tRNA-Lys tRNA gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3635 AHA_3636 AHA_3636 AHA_3636 4070047 4070859 - hypothetical protein identified by match to protein family HMM TIGR02795 gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3636 AHA_3637 AHA_3637 pal pal 4071009 4071533 - peptidoglycan-associated lipoprotein identified by match to protein family HMM PF00691%3B match to protein family HMM TIGR02802 gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3637 AHA_3638 AHA_3638 tolB tolB 4071583 4072908 - translocation protein TolB forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3638 AHA_3639 AHA_3639 tolA tolA 4073003 4074166 - protein TolA identified by match to protein family HMM PF06519%3B match to protein family HMM TIGR02794 gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3639 AHA_3640 AHA_3640 tolR tolR 4074172 4074618 - protein TolR identified by match to protein family HMM PF02472%3B match to protein family HMM TIGR02801 gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3640 AHA_3641 AHA_3641 tolQ tolQ 4074618 4075307 - protein TolQ identified by match to protein family HMM PF01618%3B match to protein family HMM TIGR02796 gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3641 AHA_3642 AHA_3642 AHA_3642 4075297 4075704 - acyl-CoA thioester hydrolase identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00051%3B match to protein family HMM TIGR02799 gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3642 AHA_3643 AHA_3643 AHA_3643 4075810 4076166 - protein YbgE gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3643 AHA_3644 AHA_3644 AHA_3644 4076108 4076224 - cyd operon protein YbgT identified by match to protein family HMM PF08173%3B match to protein family HMM TIGR02106 gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3644 AHA_3645 AHA_3645 cydB-2 cydB-2 4076239 4077375 - cytochrome d ubiquinol oxidase%2C subunit II identified by match to protein family HMM PF02322%3B match to protein family HMM TIGR00203 gene gene3641 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3645 AHA_3646 AHA_3646 cydA cydA 4077388 4078944 - cytochrome d ubiquinol oxidase%2C subunit I identified by match to protein family HMM PF01654 gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3646 AHA_3647 AHA_3647 ruvB ruvB 4079881 4080891 - Holliday junction DNA helicase RuvB promotes strand exchange during homologous recombination%3B RuvAB complex promotes branch migration%3B RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences%3B forms hexameric rings around opposite DNA arms%3B requires ATP for branch migration and orientation of RuvAB complex determines direction of migration gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3647 AHA_3648 AHA_3648 ruvA ruvA 4080900 4081514 - Holliday junction DNA helicase RuvA plays an essential role in ATP-dependent branch migration of the Holliday junction gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3648 AHA_3649 AHA_3649 AHA_3649 4081753 4083762 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3649 AHA_3650 AHA_3650 proS proS 4083898 4085622 + prolyl-tRNA synthetase identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF04073%3B match to protein family HMM TIGR00409 gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3650 AHA_3651 AHA_3651 AHA_3651 4085709 4086386 - short chain dehydrogenase/reductase family oxidoreductase identified by match to protein family HMM PF00106 gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3651 AHA_3652 AHA_3652 AHA_3652 4086451 4087080 - hypothetical protein gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3652 AHA_3653 AHA_3653 AHA_3653 4087176 4087616 - transporter identified by match to protein family HMM PF04314 gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3653 AHA_3654 AHA_3654 AHA_3654 4087676 4088455 + enoyl-CoA hydratase/isomerase family protein identified by match to protein family HMM PF00378 gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3654 AHA_3655 AHA_3655 AHA_3655 4088459 4088887 - hypothetical protein gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3655 AHA_3656 AHA_3656 AHA_3656 4089178 4089843 + chloramphenicol acetyltransferase identified by match to protein family HMM PF00132 gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3656 AHA_3657 AHA_3657 AHA_3657 4089895 4090602 - hypothetical protein gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3657 AHA_3658 AHA_3658 AHA_3658 4090775 4092379 + periplasmic murein peptide-binding protein identified by match to protein family HMM PF00496 gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3658 AHA_3659 AHA_3659 AHA_3659 4092384 4092803 + hypothetical protein gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3659 AHA_3660 AHA_3660 AHA_3660 4092858 4093277 - hypothetical protein gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3660 AHA_3661 AHA_3661 AHA_3661 4093296 4093595 - hypothetical protein identified by match to protein family HMM PF02594%3B match to protein family HMM TIGR00251 gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3661 AHA_3662 AHA_3662 AHA_3662 4093595 4094146 - integral membrane protein identified by match to protein family HMM PF02325 gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3662 AHA_3663 AHA_3663 proC proC 4094187 4095011 - pyrroline-5-carboxylate reductase identified by match to protein family HMM PF01210%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00112 gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3663 AHA_3664 AHA_3664 AHA_3664 4095070 4095771 - hypothetical protein identified by match to protein family HMM PF01168%3B match to protein family HMM TIGR00044 gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3664 AHA_3665 AHA_3665 AHA_3665 4095811 4096845 + twitching mobility protein identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3665 AHA_3666 AHA_3666 AHA_3666 4096874 4097983 + twitching motility protein PilU identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420 gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3666 AHA_3667 AHA_3667 AHA_3667 4098015 4098788 + hypothetical protein identified by match to protein family HMM PF03883 gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3667 AHA_3668 AHA_3668 AHA_3668 4098965 4100188 - ATP-dependent RNA helicase SrmB identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271 gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3668 AHA_3669 AHA_3669 AHA_3669 4100317 4101027 + SmtA protein identified by match to protein family HMM PF05175 gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3669 AHA_3670 AHA_3670 brnQ-2 brnQ-2 4101219 4102526 + branched-chain amino acid transport system II carrier protein identified by match to protein family HMM PF05525%3B match to protein family HMM TIGR00796 gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3670 AHA_3671 AHA_3671 brnQ-3 brnQ-3 4102863 4104197 + branched-chain amino acid transport system II carrier protein identified by similarity to SP:P37011%3B match to protein family HMM PF05525%3B match to protein family HMM TIGR00796 gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3671 AHA_3672 AHA_3672 AHA_3672 4104268 4104531 - hypothetical protein gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3672 AHA_3673 AHA_3673 AHA_3673 4104503 4104964 - chemotaxis protein CheX identified by match to protein family HMM PF04509 gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3673 AHA_3674 AHA_3674 zur zur 4104954 4105412 - zinc uptake regulation protein identified by similarity to SP:P32692%3B match to protein family HMM PF01475 gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3674 AHA_3675 AHA_3675 dusA dusA 4105551 4106537 + tRNA-dihydrouridine synthase A identified by match to protein family HMM PF01207%3B match to protein family HMM TIGR00742 gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3675 AHA_3676 AHA_3676 AHA_3676 4106540 4106689 + hypothetical protein gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3676 AHA_3677 AHA_3677 AHA_3677 4106764 4107189 - hypothetical protein gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3677 AHA_3678 AHA_3678 AHA_3678 4107291 4107587 - DNA-binding protein HU-alpha identified by match to protein family HMM PF00216 gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3678 AHA_3679 AHA_3679 algQ algQ 4107905 4108387 + anti-RNA polymerase sigma 70 factor binds specifically to the major sigma factor sigma 70%3B active in stationary phase gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3679 AHA_3680 AHA_3680 AHA_3680 4108489 4108869 + type IV pilus assembly protein PilZ identified by match to protein family HMM PF07238 gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3680 AHA_3681 AHA_3681 radA radA 4108941 4110305 - DNA repair protein RadA Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3681 AHA_3682 AHA_3682 AHA_3682 4110406 4111956 + type IV pilus assembly protein PilZ%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF07238 gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3682 AHA_3683 AHA_3683 AHA_3683 4111911 4112678 + hypothetical protein gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3683 AHA_3684 AHA_3684 AHA_3684 4112807 4113712 - esterase/lipase gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3684 AHA_3685 AHA_3685 AHA_3685 4113762 4114772 - phosphoserine phosphatase identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR00338%3B match to protein family HMM TIGR01488 gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3685 AHA_3686 AHA_3686 AHA_3686 4115555 4117801 + histidine kinase-response regulator hybrid protein identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3686 AHA_3687 AHA_3687 deoD deoD 4117871 4118587 - purine nucleoside phosphorylase catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3687 AHA_3688 AHA_3688 deoB deoB 4118665 4119873 - phosphopentomutase catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3688 AHA_3689 AHA_3689 deoA deoA 4119888 4121219 - thymidine phosphorylase identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM PF07831%3B match to protein family HMM TIGR02643%3B match to protein family HMM TIGR02644 gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3689 AHA_3690 AHA_3690 deoC-2 deoC-2 4121329 4122102 - deoxyribose-phosphate aldolase catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3690 AHA_3691 AHA_3691 AHA_3691 4122788 4124062 - NupC family nucleoside transporter identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804 gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3691 AHA_3692 AHA_3692 AHA_3692 4124276 4125064 - deoxyribonuclease identified by match to protein family HMM PF01026 gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3692 AHA_3693 AHA_3693 AHA_3693 4125105 4125722 + N-terminal methylation domain-containing protein identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3693 AHA_3694 AHA_3694 rumA-2 rumA-2 4126088 4127440 - 23S rRNA (uracil-5-)-methyltransferase RumA identified by match to protein family HMM PF01938%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479 gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3694 AHA_3695 AHA_3695 amt amt 4127775 4129211 - ammonium transporter identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836 gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3695 AHA_3696 AHA_3696 AHA_3696 4129664 4129749 - tRNA-Leu tRNA gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3696 AHA_3697 AHA_3697 AHA_3697 4129799 4130413 + hypothetical protein identified by match to protein family HMM PF06271 gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3697 AHA_3698 AHA_3698 AHA_3698 4130568 4131638 - permease identified by match to protein family HMM PF03739 gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3698 AHA_3699 AHA_3699 AHA_3699 4131780 4132886 - permease identified by match to protein family HMM PF03739 gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3699 AHA_3700 AHA_3700 pepA pepA 4133065 4134573 + leucyl aminopeptidase catalyzes the removal of N-terminal amino acids preferably leucine from various peptides gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3700 AHA_3701 AHA_3701 AHA_3701 4134736 4135191 + DNA polymerase III subunit chi identified by match to protein family HMM PF04364 gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3701 AHA_3702 AHA_3702 valS valS 4135194 4138109 + valyl-tRNA synthetase identified by match to protein family HMM PF00133%3B match to protein family HMM TIGR00422 gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3702 AHA_3703 AHA_3703 AHA_3703 4138122 4139588 + hypothetical protein identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471 gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3703 AHA_3704 AHA_3704 AHA_3704 4139607 4140272 + DedA family protein gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3704 AHA_3705 AHA_3705 AHA_3705 4140412 4141239 + D-alanyl-D-alanine carboxypeptidase identified by match to protein family HMM PF00768 gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3705 AHA_3706 AHA_3706 AHA_3706 4141607 4141683 - tRNA-Arg tRNA gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3706 AHA_3707 AHA_3707 AHA_3707 4141712 4141788 - tRNA-Arg tRNA gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3707 AHA_3708 AHA_3708 AHA_3708 4141817 4141893 - tRNA-Arg tRNA gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3708 AHA_3709 AHA_3709 AHA_3709 4141920 4141996 - tRNA-Arg tRNA gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3709 AHA_3710 AHA_3710 AHA_3710 4142096 4142172 - tRNA-Arg tRNA gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3710 AHA_3711 AHA_3711 AHA_3711 4142176 4142268 - tRNA-Ser tRNA gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3711 AHA_3712 AHA_3712 csrA csrA 4142483 4142671 - carbon storage regulator affects carbohydrate metabolism%3B has regulatory role in many processes gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3712 AHA_3713 AHA_3713 AHA_3713 4142765 4144012 - aspartate kinase catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%2C in Bacillus%2C lysine sensitive%3B regulated by response to starvation. gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3713 AHA_3714 AHA_3714 alaS alaS 4144029 4146653 - alanyl-tRNA synthetase Catalyzes a two-step reaction%2C first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3714 AHA_3715 AHA_3715 recX recX 4147104 4147604 - regulatory protein RecX identified by similarity to SP:P33596%3B match to protein family HMM PF02631 gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3715 AHA_3716 AHA_3716 recA recA 4147646 4148710 - recombinase A catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3716 AHA_3717 AHA_3717 AHA_3717 4148790 4149281 - CinA%2C C-terminal identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199 gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3717 AHA_3718 AHA_3718 mutS mutS 4149516 4152098 + DNA mismatch repair protein MutS This protein performs the mismatch recognition step during the DNA repair process gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3718 AHA_3719 AHA_3719 AHA_3719 4152192 4153790 - BCCT family transporter identified by match to protein family HMM PF02028%3B match to protein family HMM TIGR00842 gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3719 AHA_3720 AHA_3720 AHA_3720 4153800 4154327 - hypothetical protein gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3720 AHA_3721 AHA_3721 AHA_3721 4154491 4154970 + MarR family transcriptional regulator identified by match to protein family HMM PF01047 gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3721 AHA_3722 AHA_3722 AHA_3722 4155019 4155600 - hypothetical protein identified by match to protein family HMM PF04222 gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3722 AHA_3723 AHA_3723 AHA_3723 4155763 4156707 + D-isomer specific 2-hydroxyacid dehydrogenase family protein identified by match to protein family HMM PF02826 gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3723 AHA_3724 AHA_3724 AHA_3724 4156774 4158111 - metalloprotease opacity-associated protein A family identified by match to protein family HMM PF01551%3B match to protein family HMM PF04225 gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3724 AHA_3725 AHA_3725 AHA_3725 4158372 4159664 + hypothetical protein gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3725 AHA_3726 AHA_3726 AHA_3726 4160600 4161274 - hypothetical protein gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3726 AHA_3727 AHA_3727 AHA_3727 4159664 4160605 + immunogenic protein identified by match to protein family HMM TIGR02122 gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3727 AHA_3728 AHA_3728 znuA znuA 4161360 4162274 - zinc ABC transporter periplasmic zinc-binding protein identified by similarity to SP:P39172%3B match to protein family HMM PF01297 gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3728 AHA_3729 AHA_3729 znuC znuC 4162369 4163133 + high-affinity zinc uptake ABC transporter ATP-binding protein ZnuC identified by similarity to SP:P0A9X1%3B match to protein family HMM PF00005 gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3729 AHA_3730 AHA_3730 znuB znuB 4163155 4163934 + zinc uptake ABC transporter permease ZnuB identified by similarity to SP:P39832%3B match to protein family HMM PF00950%3B match to protein family HMM PF01032 gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3730 AHA_3731 AHA_3731 AHA_3731 4164025 4164942 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3731 AHA_3732 AHA_3732 AHA_3732 4165034 4165891 + drug/metabolite exporter family protein identified by match to protein family HMM PF00892 gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3732 AHA_3733 AHA_3733 AHA_3733 4165902 4166483 - uracil-DNA glycosylase gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3733 AHA_3734 AHA_3734 AHA_3734 4167470 4168204 - hypothetical protein gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3734 AHA_3735 AHA_3735 rarD-2 rarD-2 4166586 4167488 + RarD protein identified by match to protein family HMM PF00892%3B match to protein family HMM TIGR00688 gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3735 AHA_3736 AHA_3736 AHA_3736 4168249 4168659 + endo/excinuclease domain-containing protein identified by match to protein family HMM PF01541 gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3736 AHA_3737 AHA_3737 pspG pspG 4168744 4168962 - phage shock protein G coordinately regulated along with pspA%3B PspF-dependent induction in response to secretin overexpression in Yersinia gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3737 AHA_3738 AHA_3738 AHA_3738 4169005 4169211 - hypothetical protein identified by match to protein family HMM PF04024 gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3738 AHA_3739 AHA_3739 AHA_3739 4169214 4169876 - phage shock protein A identified by match to protein family HMM PF04012%3B match to protein family HMM TIGR02977 gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3739 AHA_3740 AHA_3740 plsC plsC 4170084 4170812 - 1-acyl-sn-glycerol-3-phosphate acyltransferase identified by match to protein family HMM PF01553%3B match to protein family HMM TIGR00530 gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3740 AHA_3741 AHA_3741 AHA_3741 4170989 4171369 + membrane protein%2C suppressor for copper-sensitivity A gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3741 AHA_3742 AHA_3742 AHA_3742 4171353 4173467 + membrane protein%2C suppressor for copper-sensitivity B identified by match to protein family HMM PF02683 gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3742 AHA_3743 AHA_3743 AHA_3743 4173478 4174233 + secreted protein%2C suppressor for copper-sensitivity C identified by match to protein family HMM PF01323 gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3743 AHA_3744 AHA_3744 AHA_3744 4174245 4174397 + hypothetical protein gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3744 AHA_3745 AHA_3745 AHA_3745 4174473 4174928 + suppressor for copper-sensitivity D identified by match to protein family HMM PF00085 gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3745 AHA_3746 AHA_3746 AHA_3746 4175115 4175492 + DnaJ domain-containing protein identified by match to protein family HMM PF00226 gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3746 AHA_3747 AHA_3747 AHA_3747 4175516 4176058 + hypothetical protein gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3747 AHA_3748 AHA_3748 AHA_3748 4176071 4176838 + hypothetical protein gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3748 AHA_3749 AHA_3749 AHA_3749 4176850 4177752 + hypothetical protein gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3749 AHA_3750 AHA_3750 AHA_3750 4177959 4178240 + hypothetical protein gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3750 AHA_3751 AHA_3751 AHA_3751 4178299 4178673 + hypothetical protein gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3751 AHA_3752 AHA_3752 AHA_3752 4178866 4180110 - multidrug transporter-like protein identified by match to protein family HMM PF07690 gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3752 AHA_3753 AHA_3753 AHA_3753 4180198 4181106 + LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3753 AHA_3754 AHA_3754 AHA_3754 4181200 4182282 - hypothetical protein gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3754 AHA_3755 AHA_3755 parC parC 4182339 4184633 - DNA topoisomerase IV subunit A decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3755 AHA_3756 AHA_3756 parE parE 4184717 4186612 - DNA topoisomerase IV subunit B decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3756 AHA_3757 AHA_3757 AHA_3757 4186727 4188736 - transporter identified by match to protein family HMM PF04632 gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3757 AHA_3758 AHA_3758 AHA_3758 4188738 4189604 - HlyD family secretion protein identified by match to protein family HMM PF00529 gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3758 AHA_3759 AHA_3759 AHA_3759 4189597 4189866 - hypothetical protein identified by match to protein family HMM PF07869 gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3759 AHA_3760 AHA_3760 AHA_3760 4189933 4190334 - glutathione-dependent formaldehyde-activating protein identified by match to protein family HMM PF04828 gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3760 AHA_3761 AHA_3761 AHA_3761 4190372 4190995 - mutator MutT protein identified by match to protein family HMM PF00293 gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3761 AHA_3762 AHA_3762 AHA_3762 4190998 4191585 - esterase YqiA identified by match to protein family HMM PF05728 gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3762 AHA_3763 AHA_3763 AHA_3763 4191595 4192413 - Icc protein identified by match to protein family HMM PF00149 gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3763 AHA_3764 AHA_3764 AHA_3764 4192440 4192886 - phosphohydrolase identified by match to protein family HMM PF06853 gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3764 AHA_3765 AHA_3765 AHA_3765 4192888 4193598 - hypothetical protein identified by match to protein family HMM PF00293%3B match to protein family HMM TIGR00052 gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3765 AHA_3766 AHA_3766 AHA_3766 4193783 4195159 + HAS ABC exporter outer membrane component identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01844 gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3766 AHA_3767 AHA_3767 hldE hldE 4195263 4196690 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D%2CD-heptose-1%2C7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D%2CD-heptose gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3767 AHA_3768 AHA_3768 htrB htrB 4196996 4197919 + lipid A biosynthesis lauroyl acyltransferase identified by match to protein family HMM PF03279%3B match to protein family HMM TIGR02207 gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3768 AHA_3769 AHA_3769 AHA_3769 4198072 4198539 + TonB domain-containing protein identified by match to protein family HMM TIGR01352 gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3769 AHA_3770 AHA_3770 AHA_3770 4198649 4199608 - adenylate cyclase identified by match to protein family HMM PF01928 gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3770 AHA_3771 AHA_3771 AHA_3771 4199773 4200459 + hypothetical protein identified by match to protein family HMM PF01865%3B match to protein family HMM TIGR00153 gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3771 AHA_3772 AHA_3772 AHA_3772 4200483 4201748 + Pho4 family protein identified by match to protein family HMM PF01384 gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3772 AHA_3773 AHA_3773 AHA_3773 4201896 4202357 + ybaK/ebsC protein identified by match to protein family HMM PF04073%3B match to protein family HMM TIGR00011 gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3773 AHA_3774 AHA_3774 AHA_3774 4202397 4203659 - hypothetical protein identified by match to protein family HMM PF07350 gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3774 AHA_3775 AHA_3775 AHA_3775 4203884 4204606 - ribosomal protein serine acetyltransferase identified by match to protein family HMM PF00583 gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3775 AHA_3776 AHA_3776 AHA_3776 4204596 4205033 - hypothetical protein identified by match to protein family HMM PF00581 gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3776 AHA_3777 AHA_3777 AHA_3777 4205051 4205518 - OsmC/Ohr family protein identified by match to protein family HMM PF02566 gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3777 AHA_3778 AHA_3778 AHA_3778 4205647 4207083 + GntR family transcriptional regulator identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392 gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3778 AHA_3779 AHA_3779 AHA_3779 4207099 4207992 - LysR family transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3779 AHA_3780 AHA_3780 AHA_3780 4208120 4208521 + murein hydrolase exporter identified by match to protein family HMM PF03788 gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3780 AHA_3781 AHA_3781 AHA_3781 4208514 4209203 + LrgB family protein identified by match to protein family HMM PF04172 gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3781 AHA_3782 AHA_3782 AHA_3782 4209300 4210214 + hypothetical protein gene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3782 AHA_3783 AHA_3783 AHA_3783 4210291 4211169 + hypothetical protein identified by similarity to GB:AAG04993.1 gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3783 AHA_3784 AHA_3784 AHA_3784 4211256 4212494 - multifunctional CCA protein identified by match to protein family HMM PF01743%3B match to protein family HMM PF01966 gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3784 AHA_3785 AHA_3785 exeA exeA 4212835 4214412 + general secretion pathway protein A identified by similarity to SP:P45754%3B match to protein family HMM PF01471 gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3785 AHA_3786 AHA_3786 AHA_3786 4214412 4215095 + general secretion pathway protein B gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3786 AHA_3787 AHA_3787 mutY mutY 4215293 4216354 + A/G-specific adenine glycosylase identified by similarity to SP:P17802%3B match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01084 gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3787 AHA_3788 AHA_3788 AHA_3788 4216363 4216635 + hypothetical protein identified by match to protein family HMM PF04362 gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3788 AHA_3789 AHA_3789 AHA_3789 4216639 4217829 + membrane-bound lytic murein transglycosylase C identified by match to protein family HMM PF01464 gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3789 AHA_3790 AHA_3790 AHA_3790 4217896 4218276 - OB-fold nucleic acid binding domain-containing protein identified by match to protein family HMM PF01336%3B match to protein family HMM PF04076 gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3790 AHA_3791 AHA_3791 AHA_3791 4218430 4219530 + phosphatidylcholine-sterol acyltransferase identified by match to protein family HMM PF00657 gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3791 AHA_3792 AHA_3792 AHA_3792 4219591 4220292 - hypothetical protein gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3792 AHA_3793 AHA_3793 AHA_3793 4220559 4221617 + outer membrane protein A OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3793 AHA_3794 AHA_3794 AHA_3794 4221703 4222272 - hypothetical protein identified by match to protein family HMM PF03886 gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3794 AHA_3795 AHA_3795 AHA_3795 4222272 4223918 - paraquat-inducible protein B identified by match to protein family HMM PF02470 gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3795 AHA_3796 AHA_3796 AHA_3796 4223911 4225191 - paraquat-inducible protein A identified by match to protein family HMM PF04403%3B match to protein family HMM TIGR00155 gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3796 AHA_3797 AHA_3797 AHA_3797 4225369 4225731 + Hfq protein identified by match to protein family HMM PF01423%3B match to protein family HMM TIGR02383 gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3797 AHA_3798 AHA_3798 AHA_3798 4225871 4226554 - CbbY family protein identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR02009 gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3798 AHA_3799 AHA_3799 AHA_3799 4226527 4227630 - sensory box/GGDEF family protein gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3799 AHA_3800 AHA_3800 AHA_3800 4227635 4229275 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3800 AHA_3801 AHA_3801 dapA-2 dapA-2 4229370 4230242 - dihydrodipicolinate synthase identified by match to protein family HMM PF00701%3B match to protein family HMM TIGR00674 gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3801 AHA_3802 AHA_3802 AHA_3802 4230523 4231551 + ribosomal RNA small subunit methyltransferase C identified by match to protein family HMM PF05175 gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3802 AHA_3803 AHA_3803 glgC glgC 4231701 4232918 + glucose-1-phosphate adenylyltransferase catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3803 AHA_3804 AHA_3804 glgA glgA 4232908 4234368 + glycogen synthase catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3804 AHA_3805 AHA_3805 AHA_3805 4234485 4234570 + tRNA-Leu tRNA gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3805 AHA_3806 AHA_3806 AHA_3806 4234626 4234711 + tRNA-Leu tRNA gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3806 AHA_3807 AHA_3807 AHA_3807 4234756 4234841 + tRNA-Leu tRNA gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3807 AHA_3808 AHA_3808 AHA_3808 4234887 4234972 + tRNA-Leu tRNA gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3808 AHA_3809 AHA_3809 AHA_3809 4235044 4235129 + tRNA-Leu tRNA gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3809 AHA_3810 AHA_3810 AHA_3810 4235506 4235715 - hypothetical protein gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3810 AHA_3811 AHA_3811 AHA_3811 4235158 4235511 + hypothetical protein gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3811 AHA_3812 AHA_3812 nhaC nhaC 4236015 4237424 + Na+/H+ antiporter NhaC identified by match to protein family HMM PF03553%3B match to protein family HMM TIGR00931 gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3812 AHA_3813 AHA_3813 AHA_3813 4237530 4238453 + transcriptional regulator identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3813 AHA_3814 AHA_3814 AHA_3814 4238653 4239798 + ABC transporter substrate-binding protein identified by match to protein family HMM PF01547 gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3814 AHA_3815 AHA_3815 AHA_3815 4239871 4240884 + ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3815 AHA_3816 AHA_3816 AHA_3816 4240881 4241849 + ABC transporter permease identified by match to protein family HMM PF00528 gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3816 AHA_3817 AHA_3817 AHA_3817 4241948 4242763 + ABC transporter permease identified by match to protein family HMM PF00528 gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3817 AHA_3818 AHA_3818 AHA_3818 4242793 4244223 + gamma-aminobutyraldehyde dehydrogenase catalyzes the formation of 4-aminobutanoate from 4-aminobutanal%3B involved in putrescine degradation gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3818 AHA_3819 AHA_3819 AHA_3819 4244380 4244712 - hypothetical protein gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3819 AHA_3820 AHA_3820 AHA_3820 4245048 4245923 - drug/metabolite exporter family transporter identified by match to protein family HMM PF00892 gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3820 AHA_3821 AHA_3821 AHA_3821 4246018 4246476 + AsnC family transcriptional regulator identified by match to protein family HMM PF01037 gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3821 AHA_3822 AHA_3822 AHA_3822 4246595 4247200 - maltose O-acetyltransferase identified by match to protein family HMM PF00132 gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3822 AHA_3823 AHA_3823 treC treC 4247204 4248865 - alpha%2Calpha-phosphotrehalase identified by match to protein family HMM PF00128%3B match to protein family HMM TIGR02403 gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3823 AHA_3824 AHA_3824 treP treP 4248934 4250454 - PTS system trehalose(maltose)-specific transporter subunit IIBC phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3824 AHA_3825 AHA_3825 treR treR 4250556 4251503 - trehalose repressor regulates genes involved in trehalose metabolism%3B binds the intermediate trehalose-6-phosphate%3B binds a dimer%3B regulates treBC operon gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3825 AHA_3826 AHA_3826 AHA_3826 4251714 4252664 + transporter identified by match to protein family HMM PF03547 gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3826 AHA_3827 AHA_3827 AHA_3827 4252732 4252926 + mercuric reductase (Hg(II) reductase) identified by match to protein family HMM PF00403 gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3827 AHA_3828 AHA_3828 AHA_3828 4253059 4254117 + type II L-asparaginase identified by match to protein family HMM PF00710%3B match to protein family HMM TIGR00520 gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3828 AHA_3829 AHA_3829 AHA_3829 4254208 4255341 - Ca2+/Na+ antiporter identified by match to protein family HMM PF01699 gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3829 AHA_3830 AHA_3830 AHA_3830 4255585 4256172 + hypothetical protein gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3830 AHA_3831 AHA_3831 mgsA mgsA 4256233 4256796 - methylglyoxal synthase catalyzes the formation of methylglyoxal from glycerone phosphate gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3831 AHA_3832 AHA_3832 AHA_3832 4256780 4258885 - hypothetical protein identified by match to protein family HMM PF05960 gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3832 AHA_3833 AHA_3833 bfr bfr 4259088 4259567 - bacterioferritin identified by match to protein family HMM PF00210%3B match to protein family HMM TIGR00754 gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3833 AHA_3834 AHA_3834 AHA_3834 4259710 4260012 - hypothetical protein identified by match to protein family HMM PF04324 gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3834 AHA_3835 AHA_3835 AHA_3835 4260054 4260365 + transcriptional activator HlyU gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3835 AHA_3836 AHA_3836 AHA_3836 4262415 4263134 - short chain dehydrogenase/reductase family oxidoreductase identified by match to protein family HMM PF00106 gene gene3833 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3836 AHA_3837 AHA_3837 AHA_3837 4260362 4262428 + hypothetical protein identified by match to protein family HMM PF00583%3B match to protein family HMM PF05127 gene gene3832 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3837 AHA_3838 AHA_3838 AHA_3838 4263341 4264354 + chemotaxis protein CheV identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584 gene gene3834 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3838 AHA_3839 AHA_3839 AHA_3839 4264415 4265854 - transporter gate domain-containing protein identified by match to protein family HMM PF07670 gene gene3835 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3839 AHA_3840 AHA_3840 AHA_3840 4265931 4266446 - hypothetical protein identified by match to protein family HMM PF08020 gene gene3836 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3840 AHA_3841 AHA_3841 AHA_3841 4266919 4268262 - Ion channel family protein identified by match to protein family HMM PF07885 gene gene3837 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3841 AHA_3842 AHA_3842 AHA_3842 4268521 4268596 - tRNA-Asn tRNA gene3838 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3842 AHA_3843 AHA_3843 AHA_3843 4268642 4268717 - tRNA-Phe tRNA gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3843 AHA_3844 AHA_3844 AHA_3844 4268721 4268796 - tRNA-Thr tRNA gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3844 AHA_3845 AHA_3845 AHA_3845 4268849 4268924 - tRNA-Phe tRNA gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3845 AHA_3846 AHA_3846 AHA_3846 4268972 4269739 - hypothetical protein identified by match to protein family HMM PF02660%3B match to protein family HMM TIGR00023 gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3846 AHA_3847 AHA_3847 folB folB 4269811 4270182 + dihydroneopterin aldolase identified by similarity to SP:P31055%3B match to protein family HMM PF02152%3B match to protein family HMM TIGR00525%3B match to protein family HMM TIGR00526 gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3847 AHA_3848 AHA_3848 folK-2 folK-2 4270182 4270691 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase identified by match to protein family HMM PF01288%3B match to protein family HMM TIGR01498 gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3848 AHA_3849 AHA_3849 AHA_3849 4270813 4271295 + DNA-binding protein identified by match to protein family HMM PF04073 gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3849 AHA_3850 AHA_3850 AHA_3850 4271305 4272693 - major facilitator transporter identified by match to protein family HMM PF07690 gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3850 AHA_3851 AHA_3851 AHA_3851 4272755 4273873 - cobalamin synthesis protein/P47K family protein identified by match to protein family HMM PF02492%3B match to protein family HMM PF07683 gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3851 AHA_3852 AHA_3852 AHA_3852 4273892 4275286 - FAD binding domain-containing protein identified by match to protein family HMM PF01565 gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3852 AHA_3853 AHA_3853 AHA_3853 4275410 4276027 - amino acid transporter LysE identified by match to protein family HMM PF01810 gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3853 AHA_3854 AHA_3854 AHA_3854 4276104 4277012 + HTH-type transcriptional regulator TrpI identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3854 AHA_3855 AHA_3855 AHA_3855 4277017 4278591 - EAL domain-containing protein identified by match to protein family HMM PF00563 gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3855 AHA_3856 AHA_3856 acnB acnB 4278756 4281353 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3856 AHA_3857 AHA_3857 AHA_3857 4281582 4283840 - serine protease identified by match to protein family HMM PF01734%3B match to protein family HMM PF07244 gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3857 AHA_3858 AHA_3858 AHA_3858 4284039 4285985 + methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3858 AHA_3859 AHA_3859 AHA_3859 4286011 4287765 + hemolysin secretion protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3859 AHA_3860 AHA_3860 AHA_3860 4287909 4288091 + hypothetical protein gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3860 AHA_3861 AHA_3861 lpdA lpdA 4288159 4289586 - dihydrolipoamide dehydrogenase E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3861 AHA_3862 AHA_3862 aceF aceF 4289736 4291631 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM TIGR01348 gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3862 AHA_3863 AHA_3863 aceE aceE 4291745 4294405 - pyruvate dehydrogenase subunit E1 E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3863 AHA_3864 AHA_3864 pdhR pdhR 4294485 4295249 - transcriptional regulator PdhR activates lctPRD operon%3B autoregulates itself through repression of pdhR-aceEF-lpdA operon%3B regulates pyruvate dehydrogenase complex gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3864 AHA_3865 AHA_3865 AHA_3865 4295525 4296097 - N-acetyl-anhydromuranmyl-L-alanine amidase identified by match to protein family HMM PF01510 gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3865 AHA_3866 AHA_3866 AHA_3866 4296188 4296715 + hypothetical protein identified by similarity to GB:AAZ24736.1 gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3866 AHA_3867 AHA_3867 nadC nadC 4296721 4297578 + nicotinate-nucleotide pyrophosphorylase identified by match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078 gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3867 AHA_3868 AHA_3868 AHA_3868 4297901 4298383 + pilin family protein identified by similarity to GB:AAX12396.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532 gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3868 AHA_3869 AHA_3869 pilB pilB 4298377 4300092 + type IV-A pilus assembly ATPase PilB identified by match to protein family HMM PF00437%3B match to protein family HMM PF05157%3B match to protein family HMM TIGR02538 gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3869 AHA_3870 AHA_3870 pilC pilC 4300208 4301449 + type 4 fimbrial assembly protein PilC identified by match to protein family HMM PF00482 gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3870 AHA_3871 AHA_3871 gspO gspO 4301472 4302344 + prepilin peptidase identified by similarity to SP:P45794%3B match to protein family HMM PF01478%3B match to protein family HMM PF06750 gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3871 AHA_3872 AHA_3872 coaE coaE 4302364 4302978 + dephospho-CoA kinase identified by similarity to SP:P0A6I9%3B match to protein family HMM PF01121%3B match to protein family HMM TIGR00152 gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3872 AHA_3873 AHA_3873 AHA_3873 4302950 4303738 + hypothetical protein identified by match to protein family HMM PF07072 gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3873 AHA_3874 AHA_3874 AHA_3874 4303748 4303942 + hypothetical protein identified by match to protein family HMM PF03884 gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3874 AHA_3875 AHA_3875 AHA_3875 4304003 4304419 - mutator MutT protein identified by match to protein family HMM PF00293%3B match to protein family HMM TIGR00586 gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3875 AHA_3876 AHA_3876 AHA_3876 4304425 4305609 - hypothetical protein gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3876 AHA_3877 AHA_3877 secA secA 4305684 4308404 - Preprotein translocase subunit SecA identified by similarity to SP:P10408%3B match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963 gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3877 AHA_3878 AHA_3878 AHA_3878 4308464 4309369 - M23/M37 peptidase domain-containing protein identified by match to protein family HMM PF01551 gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3878 AHA_3879 AHA_3879 lpxC lpxC 4309510 4310433 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3879 AHA_3880 AHA_3880 ftsZ ftsZ 4310535 4311686 - cell division protein FtsZ identified by match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065 gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3880 AHA_3881 AHA_3881 ftsA ftsA 4311727 4312986 - cell division protein FtsA identified by match to protein family HMM PF02491%3B match to protein family HMM TIGR01174 gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3881 AHA_3882 AHA_3882 ftsQ ftsQ 4312967 4313650 - cell division protein FtsQ identified by similarity to SP:P06136%3B match to protein family HMM PF03799 gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3882 AHA_3883 AHA_3883 murC murC 4313817 4315271 - UDP-N-acetylmuramate--L-alanine ligase Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3883 AHA_3884 AHA_3884 murG murG 4315268 4316353 - undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3884 AHA_3885 AHA_3885 ftsW ftsW 4316353 4317489 - cell division protein FtsW identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02614 gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3885 AHA_3886 AHA_3886 murD murD 4317531 4318814 - UDP-N-acetylmuramoylalanine--D-glutamate ligase identified by match to protein family HMM PF02875%3B match to protein family HMM TIGR01087 gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3886 AHA_3887 AHA_3887 mraY mraY 4318818 4319900 - phospho-N-acetylmuramoyl-pentapeptide-transferase identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR00445 gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3887 AHA_3888 AHA_3888 murF murF 4319894 4321249 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01143 gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3888 AHA_3889 AHA_3889 murE murE 4321246 4322730 - UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01085 gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3889 AHA_3890 AHA_3890 ftsI ftsI 4322711 4324465 - peptidoglycan synthetase FtsI identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717 gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3890 AHA_3891 AHA_3891 ftsL ftsL 4324462 4324776 - cell division protein FtsL identified by match to protein family HMM PF04999%3B match to protein family HMM TIGR02209 gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3891 AHA_3892 AHA_3892 mraW mraW 4324780 4325718 - S-adenosyl-methyltransferase MraW identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006 gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3892 AHA_3893 AHA_3893 mraZ mraZ 4325719 4326177 - cell division protein MraZ MraZ%3B UPF0040%3B crystal structure shows similarity to AbrB gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3893 AHA_3894 AHA_3894 AHA_3894 4327140 4327973 - tetrapyrrole methylase family protein identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR00096 gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3894 AHA_3895 AHA_3895 AHA_3895 4327948 4329960 + LppC superfamily protein identified by match to protein family HMM PF04348 gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3895 AHA_3896 AHA_3896 AHA_3896 4329881 4330273 + hypothetical protein identified by match to protein family HMM PF02021%3B match to protein family HMM TIGR00252 gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3896 AHA_3897 AHA_3897 gmhA-2 gmhA-2 4330283 4330873 + phosphoheptose isomerase identified by match to protein family HMM TIGR00441 gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3897 AHA_3898 AHA_3898 AHA_3898 4330830 4331456 + hypothetical protein identified by match to protein family HMM PF04972 gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3898 AHA_3899 AHA_3899 sspB sspB 4331509 4331928 - stringent starvation protein B identified by similarity to SP:P25663%3B match to protein family HMM PF04386 gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3899 AHA_3900 AHA_3900 sspA sspA 4331931 4332560 - stringent starvation protein A transcriptional activator%3B required for activation of bacteriophage P1 late promoter%3B induced by starvation gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3900 AHA_3901 AHA_3901 AHA_3901 4332648 4333382 - ubiquinol--cytochrome c reductase%2C cytochrome c1 identified by match to protein family HMM PF02167 gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3901 AHA_3902 AHA_3902 petB petB 4333379 4334596 - ubiquinol-cytochrome c reductase%2C cytochrome b subunit identified by match to protein family HMM PF00032%3B match to protein family HMM PF00033 gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3902 AHA_3903 AHA_3903 petA petA 4334599 4335189 - ubiquinol-cytochrome c reductase%2C iron-sulfur subunit identified by match to protein family HMM PF00355%3B match to protein family HMM TIGR01416 gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3903 AHA_3904 AHA_3904 rpsI rpsI 4335485 4335877 - 30S ribosomal protein S9 forms a direct contact with the tRNA during translation gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3904 AHA_3905 AHA_3905 rplM rplM 4335893 4336321 - 50S ribosomal protein L13 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3905 AHA_3906 AHA_3906 AHA_3906 4336588 4337682 - AFG1 family ATPase identified by match to protein family HMM PF03969 gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3906 AHA_3907 AHA_3907 AHA_3907 4337823 4338203 + hypothetical protein identified by match to protein family HMM PF06295 gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3907 AHA_3908 AHA_3908 degQ degQ 4338285 4339646 + serine peptidase DegQ identified by similarity to SP:P39099%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037 gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3908 AHA_3909 AHA_3909 degS degS 4339736 4340857 + periplasmic serine peptidase DegS identified by similarity to SP:P31137%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02038 gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3909 AHA_3910 AHA_3910 AHA_3910 4341166 4341528 + transcriptional regulator identified by match to protein family HMM PF00874 gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3910 AHA_3911 AHA_3911 AHA_3911 4341529 4341894 + transcriptional regulator gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3911 AHA_3912 AHA_3912 AHA_3912 4341894 4342190 + hypothetical protein gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3912 AHA_3913 AHA_3913 AHA_3913 4342336 4343007 + permease gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3913 AHA_3914 AHA_3914 AHA_3914 4343019 4343669 + hypothetical protein gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3914 AHA_3915 AHA_3915 AHA_3915 4343713 4344852 + dihydroorotase Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3915 AHA_3916 AHA_3916 AHA_3916 4344836 4345951 + pyridoxal phosphate-dependent enzyme identified by match to protein family HMM PF01212%3B match to protein family HMM PF03841%3B match to protein family HMM TIGR01437 gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3916 AHA_3917 AHA_3917 AHA_3917 4345951 4346691 + 4-hydroxy-2-ketovalerate aldolase identified by match to protein family HMM PF07071 gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3917 AHA_3918 AHA_3918 AHA_3918 4346796 4348700 + BigG family transcription antiterminator identified by match to protein family HMM PF00359%3B match to protein family HMM PF00874%3B match to protein family HMM PF05043 gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3918 AHA_3919 AHA_3919 AHA_3919 4348716 4348988 - phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003 gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3919 AHA_3920 AHA_3920 AHA_3920 4349009 4349875 - hypothetical protein identified by match to protein family HMM PF03668 gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3920 AHA_3921 AHA_3921 AHA_3921 4349918 4350364 - hypothetical protein identified by match to protein family HMM PF00359%3B match to protein family HMM TIGR01419 gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3921 AHA_3922 AHA_3922 yfiA-2 yfiA-2 4350367 4350654 - ribosomal subunit interface protein identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741 gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3922 AHA_3923 AHA_3923 rpoN rpoN 4350676 4352115 - RNA polymerase sigma-54 factor identified by match to protein family HMM PF00309%3B match to protein family HMM PF04552%3B match to protein family HMM PF04963%3B match to protein family HMM TIGR02395 gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3923 AHA_3924 AHA_3924 AHA_3924 4352181 4352906 - ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3924 AHA_3925 AHA_3925 AHA_3925 4352910 4353473 - protein YhbN identified by match to protein family HMM PF03968%3B match to protein family HMM TIGR03002 gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3925 AHA_3926 AHA_3926 AHA_3926 4353424 4353984 - hypothetical protein identified by match to protein family HMM PF06835 gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3926 AHA_3927 AHA_3927 AHA_3927 4353981 4354535 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase identified by match to protein family HMM TIGR01662%3B match to protein family HMM TIGR01670 gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3927 AHA_3928 AHA_3928 kdsD kdsD 4354535 4355530 - arabinose 5-phosphate isomerase identified by match to protein family HMM PF00571%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR00393 gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3928 AHA_3929 AHA_3929 AHA_3929 4355738 4356538 + ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3929 AHA_3930 AHA_3930 AHA_3930 4356538 4357317 + ABC transporter permease identified by match to protein family HMM PF02405%3B match to protein family HMM TIGR00056 gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3930 AHA_3931 AHA_3931 AHA_3931 4357325 4357816 + Mce family protein identified by match to protein family HMM PF02470 gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3931 AHA_3932 AHA_3932 ttg2D ttg2D 4357826 4358458 + toluene tolerance protein Ttg2D identified by match to protein family HMM PF05494 gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3932 AHA_3933 AHA_3933 AHA_3933 4358308 4358727 + anti-anti-sigma factor family protein identified by match to protein family HMM PF01740 gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3933 AHA_3934 AHA_3934 AHA_3934 4358727 4358984 + BolA/YrbA family protein identified by match to protein family HMM PF01722 gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3934 AHA_3935 AHA_3935 murA murA 4359002 4360258 + UDP-N-acetylglucosamine 1-carboxyvinyltransferase adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation%3B gram-positive bacteria have 2 copies of MurA which are active gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3935 AHA_3936 AHA_3936 AHA_3936 4360344 4361687 - protein PmbA identified by match to protein family HMM PF01523 gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3936 AHA_3937 AHA_3937 AHA_3937 4361780 4362325 + hypothetical protein identified by match to protein family HMM PF04751 gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3937 AHA_3938 AHA_3938 AHA_3938 4362411 4365494 - hypothetical protein gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3938 AHA_3939 AHA_3939 AHA_3939 4365711 4366067 - hypothetical protein identified by match to protein family HMM PF04363 gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3939 AHA_3940 AHA_3940 rrfH rrfH 4366322 4366441 - 5S ribosomal RNA rRNA gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3940 AHA_3941 AHA_3941 rrlH rrlH 4366517 4369405 - 23S ribosomal RNA rRNA gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3941 AHA_3942 AHA_3942 AHA_3942 4369644 4369719 - tRNA-Ala tRNA gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3942 AHA_3943 AHA_3943 AHA_3943 4369730 4369806 - tRNA-Ile tRNA gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3943 AHA_3944 AHA_3944 rrsH rrsH 4369875 4371424 - 16S ribosomal RNA rRNA gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3944 AHA_3945 AHA_3945 AHA_3945 4371918 4373114 + heme/copper membrane protein identified by match to protein family HMM PF05940 gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3945 AHA_3946 AHA_3946 AHA_3946 4373123 4373815 - DNA-binding protein identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883 gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3946 AHA_3947 AHA_3947 AHA_3947 4373814 4374965 + benzoate transporter identified by match to protein family HMM PF00860%3B match to protein family HMM PF03594%3B match to protein family HMM TIGR00843 gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3947 AHA_3948 AHA_3948 AHA_3948 4375116 4376180 + hypothetical protein gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3948 AHA_3949 AHA_3949 metF metF 4376243 4377139 - 5%2C10-methylenetetrahydrofolate reductase identified by match to protein family HMM PF02219%3B match to protein family HMM TIGR00676 gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3949 AHA_3950 AHA_3950 AHA_3950 4377468 4378259 + acetyltransferase identified by match to protein family HMM PF00583 gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3950 AHA_3951 AHA_3951 AHA_3951 4378323 4379807 - sugar ABC transporter periplasmic protein identified by match to protein family HMM PF01547 gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3951 AHA_3952 AHA_3952 AHA_3952 4379816 4381795 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3952 AHA_3953 AHA_3953 AHA_3953 4382015 4382626 - outer membrane protein W identified by match to protein family HMM PF03922 gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3953 AHA_3954 AHA_3954 AHA_3954 4383073 4384620 - PAS/GGDEF domain-containing protein identified by match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM PF05228%3B match to protein family HMM TIGR00254 gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3954 AHA_3955 AHA_3955 uvrA uvrA 4384899 4387727 - excinuclease ABC subunit A identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630 gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3955 AHA_3956 AHA_3956 AHA_3956 4387822 4388481 - csgAB operon transcriptional regulatory protein identified by match to protein family HMM PF00196 gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3956 AHA_3957 AHA_3957 ssb ssb 4389006 4389584 + single-strand binding protein identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621 gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3957 AHA_3958 AHA_3958 AHA_3958 4389752 4390510 + ABC polar amino acid transport system gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3958 AHA_3959 AHA_3959 AHA_3959 4390591 4390713 - hypothetical protein gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3959 AHA_3960 AHA_3960 AHA_3960 4391167 4392045 + cation efflux family protein identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297 gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3960 AHA_3961 AHA_3961 AHA_3961 4392210 4392479 + hypothetical protein gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3961 AHA_3962 AHA_3962 AHA_3962 4392879 4393091 + hypothetical protein identified by match to protein family HMM PF00313 gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3962 AHA_3963 AHA_3963 AHA_3963 4393500 4395446 + outer membrane receptor YiuR%3B outer membrane siderophore receptor gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3963 AHA_3964 AHA_3964 AHA_3964 4395481 4396968 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3964 AHA_3965 AHA_3965 AHA_3965 4397072 4398463 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3965 AHA_3966 AHA_3966 AHA_3966 4398468 4399190 - DNA-binding response regulator identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3966 AHA_3967 AHA_3967 AHA_3967 4399633 4399959 + hypothetical protein gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3967 AHA_3968 AHA_3968 AHA_3968 4400179 4400529 + hypothetical protein gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3968 AHA_3969 AHA_3969 AHA_3969 4400588 4401007 - hypothetical protein gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3969 AHA_3970 AHA_3970 AHA_3970 4401167 4402168 - sensory box protein identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254 gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3970 AHA_3971 AHA_3971 AHA_3971 4402357 4403262 - AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3971 AHA_3972 AHA_3972 AHA_3972 4403341 4403739 + lactoylglutathione lyase identified by match to protein family HMM PF00903 gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3972 AHA_3973 AHA_3973 AHA_3973 4403945 4404991 + hypothetical protein gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3973 AHA_3974 AHA_3974 recD recD 4405048 4407102 - exodeoxyribonuclease V subunit alpha identified by match to protein family HMM TIGR01447 gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3974 AHA_3975 AHA_3975 recB recB 4407099 4410716 - exodeoxyribonuclease V subunit beta identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR00609 gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3975 AHA_3976 AHA_3976 recC recC 4410716 4414066 - exodeoxyribonuclease V subunit gamma identified by match to protein family HMM PF04257%3B match to protein family HMM TIGR01450 gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3976 AHA_3977 AHA_3977 AHA_3977 4414295 4414762 - inner membrane protein YqjF identified by match to protein family HMM PF07681 gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3977 AHA_3978 AHA_3978 AHA_3978 4414728 4415414 - cupin domain-containing protein identified by match to protein family HMM PF02678%3B match to protein family HMM PF07883 gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3978 AHA_3979 AHA_3979 AHA_3979 4415445 4415777 - hypothetical protein gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3979 AHA_3980 AHA_3980 AHA_3980 4416035 4416949 + HTH-type transcriptional regulator YeeY identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3980 AHA_3981 AHA_3981 AHA_3981 4417401 4418165 + hypothetical protein gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3981 AHA_3982 AHA_3982 AHA_3982 4418232 4419038 - GntR family transcriptional regulator identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702 gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3982 AHA_3983 AHA_3983 AHA_3983 4419389 4420312 + ABC transporter substrate-binding protein gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3983 AHA_3984 AHA_3984 AHA_3984 4420383 4421156 + hypothetical protein gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3984 AHA_3985 AHA_3985 AHA_3985 4421156 4422055 + ABC transporter permease identified by match to protein family HMM PF00528 gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3985 AHA_3986 AHA_3986 AHA_3986 4422048 4422824 + ABC transporter permease identified by match to protein family HMM PF00528 gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3986 AHA_3987 AHA_3987 AHA_3987 4422831 4423838 + sulfate/thiosulfate import ATP-binding protein CysA identified by match to protein family HMM PF00005 gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3987 AHA_3988 AHA_3988 AHA_3988 4423878 4424537 + HAD family hydrolase identified by match to protein family HMM TIGR01488%3B match to protein family HMM TIGR01490 gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3988 AHA_3989 AHA_3989 AHA_3989 4424553 4426163 - hypothetical protein identified by match to protein family HMM PF00990%3B match to protein family HMM PF02743%3B match to protein family HMM TIGR00254 gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3989 AHA_3990 AHA_3990 AHA_3990 4426273 4426713 + hypothetical protein gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3990 AHA_3991 AHA_3991 AHA_3991 4426861 4427760 + transporter identified by match to protein family HMM PF00892 gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3991 AHA_3992 AHA_3992 AHA_3992 4427953 4428810 - DNA gyrase inhibitor identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445 gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3992 AHA_3993 AHA_3993 AHA_3993 4428807 4429292 - acetyltransferase identified by match to protein family HMM PF00583 gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3993 AHA_3994 AHA_3994 AHA_3994 4429456 4430904 + catalase identified by match to protein family HMM PF00199 gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3994 AHA_3995 AHA_3995 AHA_3995 4431375 4431701 - hypothetical protein gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3995 AHA_3996 AHA_3996 AHA_3996 4431917 4433155 + hypothetical protein identified by similarity to GB:AAN54257.1 gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3996 AHA_3997 AHA_3997 AHA_3997 4433315 4434088 + amino acid ABC transporter substrate-binding protein gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3997 AHA_3998 AHA_3998 AHA_3998 4434143 4434595 - hypothetical protein gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3998 AHA_3999 AHA_3999 AHA_3999 4434721 4436100 + PAP2 superfamily protein identified by match to protein family HMM PF00293%3B match to protein family HMM PF01569 gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3999 AHA_4000 AHA_4000 AHA_4000 4436103 4437182 + hypothetical protein identified by match to protein family HMM PF01594 gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4000 AHA_4001 AHA_4001 AHA_4001 4437421 4438632 - hypothetical protein gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4001 AHA_4002 AHA_4002 AHA_4002 4439021 4440139 - agmatine deiminase identified by match to protein family HMM PF04371%3B match to protein family HMM TIGR01409 gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4002 AHA_4003 AHA_4003 AHA_4003 4440307 4441200 + regulatory protein LysR identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4003 AHA_4004 AHA_4004 AHA_4004 4441289 4443178 + DNA-binding transcriptional regulator DhaR Positively regulates the dhaKLM operon from a sigma-70 promoter gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4004 AHA_4005 AHA_4005 gldA gldA 4443274 4444356 - glycerol dehydrogenase forms dimers and octamers%3B involved in conversion of glycerol to dihydroxy-acetone gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4005 AHA_4006 AHA_4006 AHA_4006 4444495 4445211 - PTS-dependent dihydroxyacetone kinase%2C phosphotransferase subunit DhaM identified by match to protein family HMM PF00381%3B match to protein family HMM PF03610%3B match to protein family HMM TIGR01003%3B match to protein family HMM TIGR02364 gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4006 AHA_4007 AHA_4007 AHA_4007 4445213 4445842 - dihydroxyacetone kinase subunit DhaL with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4007 AHA_4008 AHA_4008 dhaK dhaK 4445858 4446928 - dihydroxyacetone kinase subunit DhaK with DhaL and DhaM forms dihydroxyacetone kinase%2C which is responsible for phosphorylating dihydroxyacetone%3B DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4008 AHA_4009 AHA_4009 AHA_4009 4447160 4448503 - inner membrane protein YjcD identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916 gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4009 AHA_4010 AHA_4010 AHA_4010 4448745 4449077 + phosphoribosylaminoimidazole carboxylase ATPase subunit identified by match to protein family HMM PF07883 gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4010 AHA_4011 AHA_4011 AHA_4011 4449170 4449246 - tRNA-Asp tRNA gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4011 AHA_4012 AHA_4012 rrfI rrfI 4449344 4449463 - 5S ribosomal RNA rRNA gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4012 AHA_4013 AHA_4013 rrlI rrlI 4449539 4452427 - 23S ribosomal RNA rRNA gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4013 AHA_4014 AHA_4014 AHA_4014 4452666 4452741 - tRNA-Ala tRNA gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4014 AHA_4015 AHA_4015 AHA_4015 4452752 4452828 - tRNA-Ile tRNA gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4015 AHA_4016 AHA_4016 rrsI rrsI 4452897 4454446 - 16S ribosomal RNA rRNA gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4016 AHA_4017 AHA_4017 AHA_4017 4454846 4455427 - D%2CD-heptose 1%2C7-bisphosphate phosphatase identified by match to protein family HMM TIGR00213%3B match to protein family HMM TIGR01656%3B match to protein family HMM TIGR01662 gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4017 AHA_4018 AHA_4018 tuf-1 tuf-1 4455501 4456685 - elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4018 AHA_4019 AHA_4019 fusA fusA 4456740 4458845 - elongation factor G EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4019 AHA_4020 AHA_4020 rpsG rpsG 4458921 4459391 - 30S ribosomal protein S7 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4020 AHA_4021 AHA_4021 rpsL rpsL 4459485 4459859 - 30S ribosomal protein S12 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone%3B located at the interface of the 30S and 50S subunits%2C it traverses the body of the 30S subunit contacting proteins on the other side%3B mutations in the S12 gene confer streptomycin resistance gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4021 AHA_4022 AHA_4022 AHA_4022 4460043 4460351 - hypothetical protein identified by match to protein family HMM TIGR03011 gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4022 AHA_4023 AHA_4023 AHA_4023 4460329 4460685 - DsrF protein identified by match to protein family HMM PF02635%3B match to protein family HMM TIGR03010 gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4023 AHA_4024 AHA_4024 AHA_4024 4460695 4461087 - intracellular sulfur oxidation protein DsrE identified by match to protein family HMM PF02635%3B match to protein family HMM TIGR03012 gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4024 AHA_4025 AHA_4025 AHA_4025 4461174 4461554 - endoribonuclease L-PSP identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004 gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4025 AHA_4026 AHA_4026 AHA_4026 4461580 4462296 - MukF protein gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4026 AHA_4027 AHA_4027 rpoC rpoC 4462494 4466798 - DNA-directed RNA polymerase subunit beta' identified by match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386 gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4027 AHA_4028 AHA_4028 rpoB rpoB 4466890 4470981 - DNA-directed RNA polymerase subunit beta DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4028 AHA_4029 AHA_4029 rplL rplL 4471143 4471508 - 50S ribosomal protein L7/L12 present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4029 AHA_4030 AHA_4030 rplJ rplJ 4471560 4472060 - 50S ribosomal protein L10 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4030 AHA_4031 AHA_4031 rplA rplA 4472317 4473018 - 50S ribosomal protein L1 in Escherichia coli and Methanococcus%2C this protein autoregulates expression%3B the binding site in the mRNA mimics the binding site in the 23S rRNA gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4031 AHA_4032 AHA_4032 rplK rplK 4473023 4473451 - 50S ribosomal protein L11 binds directly to 23S ribosomal RNA gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4032 AHA_4033 AHA_4033 nusG nusG 4473585 4474136 - transcription termination/antitermination factor NusG identified by match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922 gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4033 AHA_4034 AHA_4034 secE secE 4474146 4474517 - Preprotein translocase subunit SecE identified by similarity to SP:P16920%3B match to protein family HMM PF00584%3B match to protein family HMM TIGR00964 gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4034 AHA_4035 AHA_4035 AHA_4035 4474578 4474654 - tRNA-Trp tRNA gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4035 AHA_4036 AHA_4036 tuf-2 tuf-2 4474708 4475892 - elongation factor Tu EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4036 AHA_4037 AHA_4037 AHA_4037 4476064 4476138 - tRNA-Gly tRNA gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4037 AHA_4038 AHA_4038 AHA_4038 4476177 4476261 - tRNA-Tyr tRNA gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4038 AHA_4039 AHA_4039 coaA coaA 4476523 4477461 + pantothenate kinase catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4039 AHA_4040 AHA_4040 AHA_4040 4477537 4478502 - bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor identified by similarity to SP:P06709%3B match to protein family HMM PF01022%3B match to protein family HMM PF02082%3B match to protein family HMM PF02237%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00121 gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4040 AHA_4041 AHA_4041 murB murB 4478499 4479536 - UDP-N-acetylenolpyruvoylglucosamine reductase identified by match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179 gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4041 AHA_4042 AHA_4042 AHA_4042 4479664 4480317 + KtrA identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254 gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4042 AHA_4043 AHA_4043 AHA_4043 4480314 4481669 + KtrB identified by match to protein family HMM PF02386%3B match to protein family HMM TIGR00933 gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4043 AHA_4044 AHA_4044 AHA_4044 4481697 4482524 - AraC family transcriptional regulator identified by match to protein family HMM PF00165 gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4044 AHA_4045 AHA_4045 AHA_4045 4482625 4483158 + alkylhydroperoxidase identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778 gene gene4041 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4045 AHA_4046 AHA_4046 AHA_4046 4483172 4483606 + MC21 protein identified by match to protein family HMM PF04224 gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4046 AHA_4047 AHA_4047 topB topB 4483649 4485619 - DNA topoisomerase III decatenates replicating daughter chromosomes gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4047 AHA_4048 AHA_4048 AHA_4048 4485984 4487114 + cytochrome c-type protein TorC identified by match to protein family HMM PF03264 gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4048 AHA_4049 AHA_4049 AHA_4049 4487137 4489617 + molybdopterin guanine dinucleotide-containing S/N-oxide reductase family protein identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR00509%3B match to protein family HMM TIGR01409 gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4049 AHA_4050 AHA_4050 AHA_4050 4489760 4490221 - hypothetical protein gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4050 AHA_4051 AHA_4051 AHA_4051 4490263 4491612 - sensor histidine kinase identified by match to protein family HMM PF02518 gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4051 AHA_4052 AHA_4052 AHA_4052 4491650 4492306 - two-component system%2C regulatory protein identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4052 AHA_4053 AHA_4053 AHA_4053 4492393 4492725 - hypothetical protein gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4053 AHA_4054 AHA_4054 AHA_4054 4492789 4493034 + hypothetical protein gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4054 AHA_4055 AHA_4055 AHA_4055 4493079 4493711 - membrane protein YedZ identified by match to protein family HMM PF01794 gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4055 AHA_4056 AHA_4056 AHA_4056 4493731 4494732 - sulfite oxidase subunit YedY in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B sulfite oxidase activity not demonstrated%3B requires inner membrane anchor protein YedZ gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4056 AHA_4057 AHA_4057 AHA_4057 4494804 4494899 - hypothetical protein gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4057 AHA_4058 AHA_4058 AHA_4058 4495103 4495585 + chloride channel protein EriC identified by match to protein family HMM PF06496 gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4058 AHA_4059 AHA_4059 AHA_4059 4495658 4496938 - transcriptional regulatory protein ZraR identified by similarity to SP:P14375%3B match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954 gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4059 AHA_4060 AHA_4060 AHA_4060 4496935 4497450 - hypothetical protein gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4060 AHA_4061 AHA_4061 AHA_4061 4497459 4498859 - sensor histidine kinase identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4061 AHA_4062 AHA_4062 AHA_4062 4499180 4499695 + 7%2C 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase identified by match to protein family HMM TIGR01498 gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4062 AHA_4063 AHA_4063 AHA_4063 4499699 4500403 - pteridine reductase 1 identified by match to protein family HMM PF00106 gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4063 AHA_4064 AHA_4064 AHA_4064 4500924 4501460 - hypothetical protein gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4064 AHA_4065 AHA_4065 AHA_4065 4500523 4500927 + hypothetical protein identified by match to protein family HMM PF00571 gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4065 AHA_4066 AHA_4066 AHA_4066 4501546 4502310 + glutamine transport system substrate-binding protein gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4066 AHA_4067 AHA_4067 asnC asnC 4502405 4502866 - DNA-binding transcriptional regulator AsnC transcriptional repressor of asnA which codes for aspartate-ammonia ligase gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4067 AHA_4068 AHA_4068 asnA asnA 4502900 4504012 + asparagine synthetase AsnA catalyzes the formation of asparagine from aspartate and ammonia gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4068 AHA_4069 AHA_4069 AHA_4069 4504023 4504136 - hypothetical protein gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4069 AHA_4070 AHA_4070 AHA_4070 4504222 4505046 - metallo-beta-lactamase superfamily protein identified by match to protein family HMM PF00753 gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4070 AHA_4071 AHA_4071 clpB clpB 4505107 4507680 - ATP-dependent chaperone protein ClpB identified by similarity to SP:P63284%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728 gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4071 AHA_4072 AHA_4072 AHA_4072 4507852 4508589 - hypothetical protein identified by match to protein family HMM PF02578%3B match to protein family HMM TIGR00726 gene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4072 AHA_4073 AHA_4073 AHA_4073 4508708 4509688 - ribosomal large subunit pseudouridine synthase D identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005 gene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4073 AHA_4074 AHA_4074 AHA_4074 4509644 4510561 + ComL family lipoprotein gene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4074 AHA_4075 AHA_4075 AHA_4075 4510710 4512038 - coenzyme A disulfide reductase CoADR%3B specific for coenzyme A disulfide%3B requires NADH%3B involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4075 AHA_4076 AHA_4076 AHA_4076 4512132 4513532 - sodium/dicarboxylate symporter family protein identified by match to protein family HMM PF00375 gene gene4072 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4076 AHA_4077 AHA_4077 AHA_4077 4513698 4515011 - hypothetical protein identified by match to protein family HMM PF06354 gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4077 AHA_4078 AHA_4078 AHA_4078 4515317 4516069 - periplasmic binding protein gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4078 AHA_4079 AHA_4079 pntB pntB 4516166 4517650 - pyridine nucleotide transhydrogenase catalyzes reversible transfer of hydride ion equivalent between NAD and NADP%3B membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane%3B forms a tetramer composed of two alpha and 2 beta subunits%3B AB-stereospecific enzyme gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4079 AHA_4080 AHA_4080 pntA pntA 4517662 4519188 - NAD(P) transhydrogenase subunit alpha forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific (AB-specific)%3B functions as a proton pump by translocating protons from cytoplasm to periplasm gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4080 AHA_4081 AHA_4081 AHA_4081 4519696 4520898 - alcohol dehydrogenase identified by match to protein family HMM PF00465 gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4081 AHA_4082 AHA_4082 AHA_4082 4521006 4521908 + HTH-type transcriptional regulator YqhC identified by match to protein family HMM PF00165%3B match to protein family HMM PF06719 gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4082 AHA_4083 AHA_4083 AHA_4083 4522504 4524396 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743 gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4083 AHA_4084 AHA_4084 AHA_4084 4524647 4526017 - phosphatidylserine decarboxylase identified by match to protein family HMM PF02666 gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4084 AHA_4085 AHA_4085 AHA_4085 4526310 4526386 - tRNA-Trp tRNA gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4085 AHA_4086 AHA_4086 AHA_4086 4526595 4527137 + hypothetical protein gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4086 AHA_4087 AHA_4087 pyrB pyrB 4527403 4528332 + aspartate carbamoyltransferase catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4087 AHA_4088 AHA_4088 pyrI pyrI 4528349 4528813 + aspartate carbamoyltransferase involved in the allosteric regulation of aspartate carbamoyltransferase gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4088 AHA_4089 AHA_4089 AHA_4089 4528950 4529522 + arginine repressor identified by match to protein family HMM PF01316%3B match to protein family HMM PF02863 gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4089 AHA_4090 AHA_4090 AHA_4090 4529701 4531104 - transporter identified by match to protein family HMM PF03606 gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4090 AHA_4091 AHA_4091 argF-2 argF-2 4531228 4532232 - ornithine carbamoyltransferase catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4091 AHA_4092 AHA_4092 arcC-2 arcC-2 4532363 4533289 - carbamate kinase reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4092 AHA_4093 AHA_4093 arcA-2 arcA-2 4533353 4534573 - arginine deiminase catalyzes the degradation of arginine to citruline and ammonia gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4093 AHA_4094 AHA_4094 AHA_4094 4535244 4535495 + hypothetical protein gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4094 AHA_4095 AHA_4095 AHA_4095 4535596 4536243 + ParA family protein gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4095 AHA_4096 AHA_4096 AHA_4096 4536245 4536613 + CopG family transcriptional regulator gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4096 AHA_4097 AHA_4097 AHA_4097 4537215 4538948 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4097 AHA_4098 AHA_4098 mglC mglC 4539000 4540010 - beta-methylgalactoside transporter inner membrane protein ABC transporter%3B functions in galactose transport%3B part of MglA2C2B transporter complex gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4098 AHA_4099 AHA_4099 mglA mglA 4540027 4541547 - galactose/methyl galaxtoside transporter ATP-binding protein with MglBC transports galactose or methyl galactoside into the cell%3B contains 2 ATP binding domains gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4099 AHA_4100 AHA_4100 mglB mglB 4541602 4542588 - galactose ABC transporter periplasmic galactose-binding protein identified by similarity to SP:P02927%3B match to protein family HMM PF00532 gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4100 AHA_4101 AHA_4101 lacZ lacZ 4542823 4545900 - beta-D-galactosidase forms a homotetramer%3B hydrolyzes lactose disaccharide to galactose and glucose%3B converts lactose to allolactose which is the natural inducer of the lac operon gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4101 AHA_4102 AHA_4102 galR galR 4546119 4547123 - transcriptional regulator GalR identified by similarity to SP:P03024%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532 gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4102 AHA_4103 AHA_4103 galE-2 galE-2 4547328 4548341 + UDP-glucose 4-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179 gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4103 AHA_4104 AHA_4104 galT galT 4548448 4549506 + galactose-1-phosphate uridylyltransferase catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4104 AHA_4105 AHA_4105 galK galK 4549503 4550651 + galactokinase catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4105 AHA_4106 AHA_4106 galM galM 4550572 4551708 + galactose mutarotase identified by match to protein family HMM PF01263%3B match to protein family HMM TIGR02636 gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4106 AHA_4107 AHA_4107 AHA_4107 4551894 4552904 + aldo/keto reductase identified by match to protein family HMM PF00248 gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4107 AHA_4108 AHA_4108 AHA_4108 4553085 4553900 + undecaprenyl pyrophosphate phosphatase BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4108 AHA_4109 AHA_4109 AHA_4109 4553962 4554627 - transcriptional activator ChrR identified by match to protein family HMM TIGR02451 gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4109 AHA_4110 AHA_4110 AHA_4110 4554620 4555300 - ECF subfamily RNA polymerase sigma factor identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937 gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4110 AHA_4111 AHA_4111 AHA_4111 4555322 4555981 - ATP-dependent protease La identified by match to protein family HMM PF02190 gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4111 AHA_4112 AHA_4112 argS argS 4556202 4557947 + arginyl-tRNA synthetase identified by match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456 gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4112 AHA_4113 AHA_4113 AHA_4113 4557951 4558790 + cell division protein identified by match to protein family HMM PF05036 gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4113 AHA_4114 AHA_4114 hslV hslV 4558979 4559512 + ATP-dependent protease peptidase subunit heat shock protein involved in degradation of misfolded proteins gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4114 AHA_4115 AHA_4115 hslU hslU 4559605 4560933 + ATP-dependent protease ATP-binding subunit HslU heat shock protein involved in degradation of misfolded proteins gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4115 AHA_4116 AHA_4116 AHA_4116 4561026 4562450 - major facilitator transporter identified by match to protein family HMM PF07690 gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4116 AHA_4117 AHA_4117 AHA_4117 4562573 4563529 + regulatory protein LysR identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466 gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4117 AHA_4118 AHA_4118 nirB-2 nirB-2 4563784 4566363 + nitrite reductase [NAD(P)H]%2C large subunit identified by similarity to SP:P08201%3B match to protein family HMM PF00070%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM PF04324%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR02374 gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4118 AHA_4119 AHA_4119 nirD nirD 4566470 4566787 + nitrite reductase small subunit involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+%3B bounds to NirB%2C the cytoplasmic subunit%2C whose expression is induced at high nitrate concentrations gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4119 AHA_4120 AHA_4120 AHA_4120 4566839 4567651 + nitrite transporter NirC member of the FNT family of formate and nitrite transporters gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4120 AHA_4121 AHA_4121 AHA_4121 4567664 4569070 + siroheme synthase identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470 gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4121 AHA_4122 AHA_4122 mgtE-2 mgtE-2 4569143 4570627 + magnesium transporter identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400 gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4122 AHA_4123 AHA_4123 AHA_4123 4570685 4572538 - methyl-accepting chemotaxis protein identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672 gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4123 AHA_4124 AHA_4124 rraA-2 rraA-2 4572685 4573170 + ribonuclease activity regulator protein RraA regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4124 AHA_4125 AHA_4125 AHA_4125 4573439 4574113 - hypothetical protein identified by match to protein family HMM PF02592%3B match to protein family HMM TIGR00697 gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4125 AHA_4126 AHA_4126 AHA_4126 4574246 4574569 - hypothetical protein gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4126 AHA_4127 AHA_4127 AHA_4127 4574544 4575971 - hypothetical protein identified by match to protein family HMM PF02696 gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4127 AHA_4128 AHA_4128 AHA_4128 4576075 4576374 + cytochrome c-552 identified by match to protein family HMM PF00034 gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4128 AHA_4129 AHA_4129 recQ recQ 4576443 4578278 - ATP-dependent DNA helicase RecQ identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF00570%3B match to protein family HMM TIGR00614%3B match to protein family HMM TIGR01389 gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4129 AHA_4130 AHA_4130 AHA_4130 4578421 4578876 + thioesterase (4HBT) superfamily protein identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00369 gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4130 AHA_4131 AHA_4131 AHA_4131 4579001 4579528 + hypothetical protein gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4131 AHA_4132 AHA_4132 AHA_4132 4579858 4579934 - tRNA-Pro tRNA gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4132 AHA_4133 AHA_4133 AHA_4133 4580082 4580792 - mosc domain-containing protein identified by match to protein family HMM PF03473%3B match to protein family HMM PF03475 gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4133 AHA_4134 AHA_4134 potI potI 4580838 4581680 - putrescine ABC transporter permease PotI identified by similarity to SP:P31136%3B match to protein family HMM PF00528 gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4134 AHA_4135 AHA_4135 potH potH 4581677 4582579 - putrescine ABC transporter permease PotH identified by similarity to SP:P31135%3B match to protein family HMM PF00528 gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4135 AHA_4136 AHA_4136 AHA_4136 4582579 4583733 - putrescine transport ATP-binding protein PotG identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01187 gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4136 AHA_4137 AHA_4137 potD potD 4583809 4584894 - spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein identified by match to protein family HMM PF01547 gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4137 AHA_4138 AHA_4138 potF potF 4585012 4586109 - putrescine ABC transporter periplasmic putrescine-binding protein identified by similarity to SP:P31133%3B match to protein family HMM PF01547 gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4138 AHA_4139 AHA_4139 AHA_4139 4586164 4587525 - aminotransferase identified by match to protein family HMM PF00202 gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4139 AHA_4140 AHA_4140 AHA_4140 4587713 4589044 - glutamine synthetase identified by match to protein family HMM PF00120 gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4140 AHA_4141 AHA_4141 AHA_4141 4589513 4589899 + RNA polymerase-binding protein DksA identified by match to protein family HMM PF01258 gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4141 AHA_4142 AHA_4142 AHA_4142 4590070 4590927 + hypothetical protein gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4142 AHA_4143 AHA_4143 AHA_4143 4590979 4591425 + hypothetical protein identified by similarity to GB:AAS70268.1%3B match to protein family HMM PF06127 gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4143 AHA_4144 AHA_4144 AHA_4144 4591447 4591926 + CreA family protein identified by match to protein family HMM PF05981 gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4144 AHA_4145 AHA_4145 AHA_4145 4592004 4592993 + D-lactate dehydrogenase identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826 gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4145 AHA_4146 AHA_4146 AHA_4146 4593085 4594464 + chaperone gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4146 AHA_4147 AHA_4147 AHA_4147 4594436 4595038 + heat shock protein HslJ identified by match to protein family HMM PF03724 gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4147 AHA_4148 AHA_4148 AHA_4148 4595109 4595957 + hypothetical protein gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4148 AHA_4149 AHA_4149 AHA_4149 4596071 4597792 + maltodextrin glucosidase identified by match to protein family HMM PF00128 gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4149 AHA_4150 AHA_4150 AHA_4150 4598015 4599019 + lipopolysaccharide O-Ag biosynthesis protein FlmA identified by similarity to GB:AAD45656.2%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993 gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4150 AHA_4151 AHA_4151 flmB flmB 4599016 4600149 + lipopolysaccharide O-Ag biosynthesis protein FlmB identified by similarity to GB:AAD45657.1%3B match to protein family HMM PF01041%3B match to protein family HMM PF01212 gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4151 AHA_4152 AHA_4152 AHA_4152 4600278 4601033 - transferase identified by match to protein family HMM PF00483 gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4152 AHA_4153 AHA_4153 AHA_4153 4601040 4601678 - hypothetical protein gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4153 AHA_4154 AHA_4154 AHA_4154 4601675 4604071 - hypothetical protein identified by similarity to GB:AAP78033.1 gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4154 AHA_4155 AHA_4155 AHA_4155 4604068 4604790 - methionyl-tRNA formyltransferase-like protein gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4155 AHA_4156 AHA_4156 AHA_4156 4604787 4605362 - hypothetical protein gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4156 AHA_4157 AHA_4157 AHA_4157 4605362 4605883 - adenylylsulfate kinase identified by match to protein family HMM PF01583 gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4157 AHA_4158 AHA_4158 AHA_4158 4605931 4606887 - hypothetical protein gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4158 AHA_4159 AHA_4159 AHA_4159 4606989 4608884 - hypothetical protein gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4159 AHA_4160 AHA_4160 AHA_4160 4608995 4610074 - hypothetical protein gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4160 AHA_4161 AHA_4161 AHA_4161 4610187 4610966 - cephalosporin hydroxylase identified by match to protein family HMM PF04989 gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4161 AHA_4162 AHA_4162 AHA_4162 4610986 4612092 - spore coat polysaccharide biosynthesis protein SpsC identified by match to protein family HMM PF00266%3B match to protein family HMM PF01041%3B match to protein family HMM PF01212 gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4162 AHA_4163 AHA_4163 AHA_4163 4612089 4613312 - hypothetical protein identified by similarity to GB:BAA16904.1 gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4163 AHA_4164 AHA_4164 rfbC-2 rfbC-2 4613309 4613872 - dTDP-4-dehydrorhamnose 3%2C5-epimerase identified by match to protein family HMM PF00908 gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4164 AHA_4165 AHA_4165 rfbG rfbG 4613869 4614936 - CDP-glucose 4%2C6-dehydratase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR02622 gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4165 AHA_4166 AHA_4166 rfbF rfbF 4614933 4615706 - glucose-1-phosphate cytidylyltransferase identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02623 gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4166 AHA_4167 AHA_4167 AHA_4167 4615748 4616581 - glycosyl transferase family protein identified by match to protein family HMM PF00535 gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4167 AHA_4168 AHA_4168 AHA_4168 4616605 4617909 - UDP-N-acetyl-D-mannosamine dehydrogenase identified by match to protein family HMM PF00984%3B match to protein family HMM PF03446%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026 gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4168 AHA_4169 AHA_4169 AHA_4169 4617943 4619079 - glycoside hydrolase family protein identified by match to protein family HMM PF00534 gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4169 AHA_4170 AHA_4170 AHA_4170 4620296 4621396 - glycosyl transferase family protein identified by match to protein family HMM PF01501 gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4170 AHA_4171 AHA_4171 AHA_4171 4621433 4622389 - glycosyltransferase identified by match to protein family HMM PF00535 gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4171 AHA_4172 AHA_4172 AHA_4172 4622548 4623735 - acyl-CoA reductase LuxC gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4172 AHA_4173 AHA_4173 AHA_4173 4623732 4624790 - long-chain-fatty-acid--luciferin-component ligase%2C Acyl-protein synthase gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4173 AHA_4174 AHA_4174 AHA_4174 4624790 4626160 - long-chain fatty acid-CoA ligase identified by match to protein family HMM PF00501 gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4174 AHA_4175 AHA_4175 AHA_4175 4626160 4626909 - short chain dehydrogenase/reductase family oxidoreductase identified by match to protein family HMM PF00106 gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4175 AHA_4176 AHA_4176 AHA_4176 4626909 4627142 - hypothetical protein identified by similarity to GB:2203284A gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4176 AHA_4177 AHA_4177 AHA_4177 4627139 4627675 - hypothetical protein gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4177 AHA_4178 AHA_4178 AHA_4178 4627840 4628535 + NeuA protein identified by match to protein family HMM PF02348 gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4178 AHA_4179 AHA_4179 AHA_4179 4628525 4629781 + FlmD protein identified by similarity to GB:AAD45659.1 gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4179 AHA_4180 AHA_4180 nueB nueB 4629788 4630834 + pseudaminic acid synthase%2C NeuB identified by similarity to GB:AAD45660.1%3B match to protein family HMM PF01354%3B match to protein family HMM PF03102 gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4180 AHA_4181 AHA_4181 AHA_4181 4630827 4632122 + hypothetical protein identified by similarity to GB:AAY90924.1 gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4181 AHA_4182 AHA_4182 AHA_4182 4632119 4632379 + hypothetical protein gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4182 AHA_4183 AHA_4183 AHA_4183 4632497 4633858 - hypothetical protein identified by similarity to GB:AAR35342.1 gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4183 AHA_4184 AHA_4184 AHA_4184 4632415 4632507 + hypothetical protein gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4184 AHA_4185 AHA_4185 AHA_4185 4633855 4634259 - glyoxalase identified by match to protein family HMM PF00903 gene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4185 AHA_4186 AHA_4186 AHA_4186 4634249 4635013 - aminoglycoside 3-N-acetyltransferase family protein gene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4186 AHA_4187 AHA_4187 AHA_4187 4635010 4635234 - hypothetical protein gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4187 AHA_4188 AHA_4188 AHA_4188 4635227 4636903 - FkbH domain-containing protein identified by match to protein family HMM TIGR01681%3B match to protein family HMM TIGR01686 gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4188 AHA_4189 AHA_4189 AHA_4189 4637007 4637540 - ATP:cob(I)alamin adenosyltransferase identified by match to protein family HMM PF01923 gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4189 AHA_4190 AHA_4190 AHA_4190 4637628 4638770 - hypothetical protein gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4190 AHA_4191 AHA_4191 trmA trmA 4638941 4640074 + tRNA (uracil-5-)-methyltransferase catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4191 AHA_4192 AHA_4192 AHA_4192 4640264 4641022 + DNA-binding transcriptional regulator RstA response regulator in two-component regulatory system with RstB gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4192 AHA_4193 AHA_4193 AHA_4193 4641139 4642464 + sensor protein RstB identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518 gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4193 AHA_4194 AHA_4194 AHA_4194 4642474 4642701 + hypothetical protein gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4194 AHA_4195 AHA_4195 AHA_4195 4642778 4644034 - NADP-dependent malic enzyme identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949 gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4195 AHA_4196 AHA_4196 AHA_4196 4644216 4645673 - nucleoside-diphosphate-sugar epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF05368 gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4196 AHA_4197 AHA_4197 rpmE rpmE 4645817 4646044 - 50S ribosomal protein L31 RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4197 AHA_4198 AHA_4198 priA priA 4646180 4648387 + primosomal protein N' identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595 gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4198 AHA_4199 AHA_4199 AHA_4199 4648467 4649567 - hypothetical protein gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4199 AHA_4200 AHA_4200 AHA_4200 4649744 4650850 - outer membrane protein A OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4200 AHA_4201 AHA_4201 ilvA ilvA 4651098 4652618 - threonine dehydratase threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4201 AHA_4202 AHA_4202 ilvD ilvD 4652622 4654589 - dihydroxy-acid dehydratase catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4202 AHA_4203 AHA_4203 ilvE ilvE 4654608 4655552 - branched-chain amino acid aminotransferase catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4203 AHA_4204 AHA_4204 ilvB-2 ilvB-2 4655813 4657459 - acetolactate synthase 2 catalytic subunit catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4204 AHA_4205 AHA_4205 AHA_4205 4657546 4657644 - ilvBEDA operon leader peptide gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4205 AHA_4206 AHA_4206 AHA_4206 4657843 4659357 + Mg chelatase-like protein identified by match to protein family HMM PF01078%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00368 gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4206 AHA_4207 AHA_4207 AHA_4207 4659478 4660392 + acyltransferase identified by match to protein family HMM PF01553 gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4207 AHA_4208 AHA_4208 AHA_4208 4661288 4661773 - hypothetical protein identified by match to protein family HMM PF04463 gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4208 AHA_4209 AHA_4209 AHA_4209 4660308 4661342 + acyltransferase identified by match to protein family HMM PF01553 gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4209 AHA_4210 AHA_4210 AHA_4210 4661871 4662521 - MutT/nudix family protein identified by match to protein family HMM PF00293 gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4210 AHA_4211 AHA_4211 AHA_4211 4662597 4663232 + pyrazinamidase/nicotinamidase identified by match to protein family HMM PF00857 gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4211 AHA_4212 AHA_4212 pncB pncB 4663334 4664512 + nicotinate phosphoribosyltransferase catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4212 AHA_4213 AHA_4213 phnD phnD 4664637 4665482 + phosphonate ABC transporter periplasmic phosphonate-binding protein identified by match to protein family HMM TIGR01098 gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4213 AHA_4214 AHA_4214 phnC phnC 4665479 4666240 + phosphonate ABC transporter ATPase identified by similarity to SP:Q88PM5%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02315 gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4214 AHA_4215 AHA_4215 phnE phnE 4666240 4667775 + phosphonate ABC transporter permease identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01097 gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4215 AHA_4216 AHA_4216 dsbA dsbA 4667879 4668487 - thiol:disulfide interchange protein DsbA identified by similarity to SP:P24991%3B match to protein family HMM PF01323 gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4216 AHA_4217 AHA_4217 AHA_4217 4668625 4669614 - serine/threonine protein kinase catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro%3B specific substrate in vivo has not been identified yet%3B plays a role in long-term cell survival and expression of surface appendages gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4217 AHA_4218 AHA_4218 ccoG ccoG 4669706 4671154 - cytochrome c oxidase accessory protein CcoG identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR02745 gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4218 AHA_4219 AHA_4219 AHA_4219 4671354 4671617 - hypothetical protein identified by match to protein family HMM PF06288 gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4219 AHA_4220 AHA_4220 AHA_4220 4671648 4672763 - diguanylate cyclase identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4220 AHA_4221 AHA_4221 cueR cueR 4672929 4673318 - Cu(I)-responsive transcriptional regulator identified by similarity to SP:P0A9G4%3B match to protein family HMM PF00376%3B match to protein family HMM TIGR02044 gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4221 AHA_4222 AHA_4222 copA copA 4673329 4675749 - copper-exporting ATPase identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525 gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4222 AHA_4223 AHA_4223 pyrE pyrE 4675930 4676583 - orotate phosphoribosyltransferase involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4223 AHA_4224 AHA_4224 rph rph 4676658 4677431 - ribonuclease PH identified by match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM TIGR01966 gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4224 AHA_4225 AHA_4225 AHA_4225 4677521 4678384 + hypothetical protein identified by match to protein family HMM PF03755%3B match to protein family HMM TIGR00255 gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4225 AHA_4226 AHA_4226 AHA_4226 4679459 4680577 - D-glycero-D-manno-heptosyltransferase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4226 AHA_4227 AHA_4227 AHA_4227 4678551 4679618 + ADP-heptose--LPS heptosyltransferase identified by match to protein family HMM PF01075 gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4227 AHA_4228 AHA_4228 AHA_4228 4680633 4681571 - heptosyltransferase III gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4228 AHA_4229 AHA_4229 AHA_4229 4681750 4682415 - lipooligosaccharide biosynthesis protein LpsA identified by match to protein family HMM PF01755 gene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4229 AHA_4230 AHA_4230 AHA_4230 4682412 4683626 - O-antigen polymerase identified by match to protein family HMM PF04932 gene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4230 AHA_4231 AHA_4231 AHA_4231 4683630 4685480 - protein WavL identified by match to protein family HMM PF01522 gene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4231 AHA_4232 AHA_4232 rfaD rfaD 4685503 4686459 - ADP-L-glycero-D-manno-heptose-6-epimerase identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR02197 gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4232 AHA_4233 AHA_4233 AHA_4233 4686616 4687260 + TetR family transcriptional regulator identified by match to protein family HMM PF00440 gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4233 AHA_4234 AHA_4234 kbl kbl 4687376 4688566 + 2-amino-3-ketobutyrate CoA ligase catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine gene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4234 AHA_4235 AHA_4235 tdh tdh 4688623 4689651 + L-threonine 3-dehydrogenase converts threonine and NAD to 1%2C2-amino-3-oxobutanoate and NADH%3B functions in threonine catabolism gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4235 AHA_4236 AHA_4236 AHA_4236 4689894 4690307 + cytochrome c5 identified by match to protein family HMM PF00034 gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4236 AHA_4237 AHA_4237 AHA_4237 4690393 4692678 + GAF domain/GGDEF domain/EAL domain-containing protein identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254 gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4237 AHA_4238 AHA_4238 rep rep 4692686 4694698 - ATP-dependent DNA helicase Rep identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR01074 gene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4238 AHA_4239 AHA_4239 AHA_4239 4694851 4696071 + cysteine desulfurase identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR01979 gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4239 AHA_4240 AHA_4240 AHA_4240 4696022 4696519 + SufE protein identified by match to protein family HMM PF02657 gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4240 AHA_4241 AHA_4241 AHA_4241 4696537 4697373 - ThiF domain-containing protein identified by match to protein family HMM PF00899 gene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4241 AHA_4242 AHA_4242 AHA_4242 4697520 4697596 - tRNA-Asp tRNA gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4242 AHA_4243 AHA_4243 rrfJ rrfJ 4697694 4697813 - 5S ribosomal RNA rRNA gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4243 AHA_4244 AHA_4244 rrlJ rrlJ 4697928 4700816 - 23S ribosomal RNA rRNA gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4244 AHA_4245 AHA_4245 AHA_4245 4701054 4701129 - tRNA-Glu tRNA gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4245 AHA_4246 AHA_4246 rrsJ rrsJ 4701326 4702875 - 16S ribosomal RNA rRNA gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4246 AHA_4247 AHA_4247 AHA_4247 4703283 4704401 - hypothetical protein gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4247 AHA_4248 AHA_4248 tonB-2 tonB-2 4704464 4705126 - outer membrane receptor-mediated transport energizer protein TonB identified by similarity to SP:Q51368%3B match to protein family HMM PF03544%3B match to protein family HMM TIGR01352 gene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4248 AHA_4249 AHA_4249 AHA_4249 4705123 4705524 - biopolymer transport exbD2 protein identified by match to protein family HMM PF02472 gene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4249 AHA_4250 AHA_4250 AHA_4250 4705521 4706051 - TonB system biopolymer transport component identified by match to protein family HMM PF01618 gene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4250 AHA_4251 AHA_4251 AHA_4251 4706048 4707355 - TonB system biopolymer transport component identified by match to protein family HMM PF01618 gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4251 AHA_4252 AHA_4252 AHA_4252 4707352 4708089 - chromosome segregation ATPase gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4252 AHA_4253 AHA_4253 AHA_4253 4708323 4708934 + transcriptional activator protein AhyR/asaR identified by match to protein family HMM PF00196%3B match to protein family HMM PF03472 gene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4253 AHA_4254 AHA_4254 glmS glmS 4708999 4710831 - glucosamine--fructose-6-phosphate aminotransferase identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135 gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4254 AHA_4255 AHA_4255 srlR srlR 4710888 4711661 - glucitol operon repressor identified by similarity to SP:P15082%3B match to protein family HMM PF00455%3B match to protein family HMM PF08220 gene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4255 AHA_4256 AHA_4256 AHA_4256 4711784 4712458 + transcriptional regulatory protein CreB identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486 gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4256 AHA_4257 AHA_4257 AHA_4257 4712455 4713876 + sensory histidine kinase CreC part of a two-component regulatory system with CreB or PhoB%3B involved in catabolic regulation gene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4257 AHA_4258 AHA_4258 AHA_4258 4713960 4714754 + beta-lactamase identified by match to protein family HMM PF00905 gene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4258 AHA_4259 AHA_4259 AHA_4259 4714873 4716234 + hypothetical protein identified by match to protein family HMM PF06123 gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4259 AHA_4260 AHA_4260 glmU glmU 4716285 4717646 - UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase identified by match to protein family HMM PF00132%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR01173 gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4260 AHA_4261 AHA_4261 atpC atpC 4717741 4718160 - F0F1 ATP synthase subunit epsilon part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4261 AHA_4262 AHA_4262 atpD atpD 4718188 4719576 - F0F1 ATP synthase subunit beta Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit gene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4262 AHA_4263 AHA_4263 atpG atpG 4719610 4720476 - F0F1 ATP synthase subunit gamma Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4263 AHA_4264 AHA_4264 atpA atpA 4720520 4722061 - F0F1 ATP synthase subunit alpha produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4264 AHA_4265 AHA_4265 atpH atpH 4722077 4722610 - F0F1 ATP synthase subunit delta Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4265 AHA_4266 AHA_4266 atpF atpF 4722624 4723094 - F0F1 ATP synthase subunit B Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4266 AHA_4267 AHA_4267 atpE atpE 4723147 4723389 - F0F1 ATP synthase subunit C Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 gene gene4263 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4267 AHA_4268 AHA_4268 atpB atpB 4723448 4724230 - F0F1 ATP synthase subunit A Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 gene gene4264 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4268 AHA_4269 AHA_4269 atpI atpI 4724239 4724631 - ATP synthase F0%2C I subunit identified by match to protein family HMM PF03899 gene gene4265 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4269 AHA_4270 AHA_4270 AHA_4270 4724840 4725748 - chromosome partitioning protein ParB identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180 gene gene4266 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4270 AHA_4271 AHA_4271 AHA_4271 4725745 4726548 - Soj protein identified by match to protein family HMM PF01656 gene gene4267 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4271 AHA_4272 AHA_4272 gidB gidB 4726557 4727201 - 16S rRNA methyltransferase GidB glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA gene gene4268 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4272 AHA_4273 AHA_4273 gidA gidA 4727222 4729111 - tRNA uridine 5-carboxymethylaminomethyl modification protein GidA GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs gene gene4269 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4273 AHA_4274 AHA_4274 AHA_4274 4729621 4730184 - protein MioC identified by match to protein family HMM PF00258 gene gene4270 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4274 AHA_4275 AHA_4275 AHA_4275 4730433 4732562 + ferrichrome receptor identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783 gene gene4271 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4275 AHA_4276 AHA_4276 AHA_4276 4732642 4734300 + multidrug transporter membrane protein/ATP-binding component efflux pump for the antibacterial peptide microcin J25 gene gene4272 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4276 AHA_4277 AHA_4277 AHA_4277 4734323 4735087 + ferrichrome ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene4273 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4277 AHA_4278 AHA_4278 AHA_4278 4735106 4736032 + ferrichrome-binding periplasmic protein identified by match to protein family HMM PF01497 gene gene4274 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4278 AHA_4279 AHA_4279 AHA_4279 4736029 4738011 + iron-hydroxamate transporter permease subunit part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome gene gene4275 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4279 AHA_4280 AHA_4280 trmE trmE 4738082 4739443 - tRNA modification GTPase TrmE in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE gene gene4276 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4280 AHA_4281 AHA_4281 AHA_4281 4739553 4741199 - membrane protein OxaA identified by match to protein family HMM PF02096 gene gene4277 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4281 AHA_4282 AHA_4282 AHA_4282 4741205 4741432 - hypothetical protein identified by match to protein family HMM PF01809%3B match to protein family HMM TIGR00278 gene gene4278 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4282 AHA_4283 AHA_4283 rnpA rnpA 4741420 4741779 - ribonuclease P protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates gene gene4279 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4283 AHA_4284 AHA_4284 rpmH rpmH 4741779 4741913 - 50S ribosomal protein L34 in Escherichia coli transcription of this gene is enhanced by polyamines gene gene4280 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4284 AHA_4285 AHA_4285 AHA_4285 4742183 4742917 - L-cystine ABC transporter ATP-binding protein identified by match to protein family HMM PF00005 gene gene4281 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4285 AHA_4286 AHA_4286 AHA_4286 4742930 4743598 - amino-acid ABC transporter permease YckJ identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726 gene gene4282 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4286 AHA_4287 AHA_4287 AHA_4287 4743599 4744357 - cystine-binding periplasmic protein identified by match to protein family HMM PF00497 gene gene4283 http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4287