locus-tag class description HQ398_RS00005 PF00330 Aconitase family (aconitate hydratase) HQ398_RS00010 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ398_RS00040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_RS00040 PF00205 Thiamine pyrophosphate enzyme, central domain HQ398_RS00040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ398_RS00045 PF10369 Small subunit of acetolactate synthase HQ398_RS00050 PF01810 LysE type translocator HQ398_RS00060 PF01546 Peptidase family M20/M25/M40 HQ398_RS00090 PF05930 Prophage CP4-57 regulatory protein (AlpA) HQ398_RS00105 PF01609 Transposase DDE domain HQ398_RS00150 PF04002 RadC-like JAB domain HQ398_RS00180 PF01609 Transposase DDE domain HQ398_RS00185 PF16736 Single Cache-like HQ398_RS00185 PF00989 PAS fold HQ398_RS00185 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS00190 PF00072 Response regulator receiver domain HQ398_RS00190 PF01627 Hpt domain HQ398_RS00190 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS00190 PF00672 HAMP domain HQ398_RS00190 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ398_RS00195 PF00072 Response regulator receiver domain HQ398_RS00195 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS00200 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS00200 PF00072 Response regulator receiver domain HQ398_RS00205 PF02954 Bacterial regulatory protein, Fis family HQ398_RS00210 PF01207 Dihydrouridine synthase (Dus) HQ398_RS00215 PF02321 Outer membrane efflux protein HQ398_RS00220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS00250 PF00072 Response regulator receiver domain HQ398_RS00255 PF00854 POT family HQ398_RS00260 PF00483 Nucleotidyl transferase HQ398_RS00270 PF07085 DRTGG domain HQ398_RS00270 PF01515 Phosphate acetyl/butaryl transferase HQ398_RS00275 PF00871 Acetokinase family HQ398_RS00280 PF04217 Protein of unknown function, DUF412 HQ398_RS00285 PF03887 YfbU domain HQ398_RS00290 PF00578 AhpC/TSA family HQ398_RS00300 PF00701 Dihydrodipicolinate synthetase family HQ398_RS00305 PF06804 NlpB/DapX lipoprotein HQ398_RS00310 PF01259 SAICAR synthetase HQ398_RS00320 PF03466 LysR substrate binding domain HQ398_RS00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS00325 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HQ398_RS00345 PF00072 Response regulator receiver domain HQ398_RS00345 PF00989 PAS fold HQ398_RS00345 PF01627 Hpt domain HQ398_RS00345 PF18415 Histidine kinase receptor ArcB trans-membrane domain HQ398_RS00345 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS00350 PF01966 HD domain HQ398_RS00350 PF13286 Phosphohydrolase-associated domain HQ398_RS00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS00360 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS00360 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ398_RS00360 PF00072 Response regulator receiver domain HQ398_RS00365 PF00563 EAL domain HQ398_RS00365 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS00365 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS00370 PF00672 HAMP domain HQ398_RS00370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS00375 PF02357 Transcription termination factor nusG HQ398_RS00380 PF03180 NLPA lipoprotein HQ398_RS00385 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS00390 PF00005 ABC transporter HQ398_RS00390 PF09383 NIL domain HQ398_RS00400 PF00480 ROK family HQ398_RS00405 PF08331 Domain of unknown function (DUF1730) HQ398_RS00410 PF01256 Carbohydrate kinase HQ398_RS00410 PF03853 YjeF-related protein N-terminus HQ398_RS00415 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ398_RS00420 PF01520 N-acetylmuramoyl-L-alanine amidase HQ398_RS00425 PF01119 DNA mismatch repair protein, C-terminal domain HQ398_RS00425 PF08676 MutL C terminal dimerisation domain HQ398_RS00435 PF17209 Hfq protein HQ398_RS00440 PF01926 50S ribosome-binding GTPase HQ398_RS00440 PF13167 GTP-binding GTPase N-terminal HQ398_RS00440 PF16360 GTP-binding GTPase Middle Region HQ398_RS00445 PF01145 SPFH domain / Band 7 family HQ398_RS00445 PF12221 Bacterial membrane protein N terminal HQ398_RS00450 PF01145 SPFH domain / Band 7 family HQ398_RS00455 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ398_RS00460 PF00348 Polyprenyl synthetase HQ398_RS00465 PF00829 Ribosomal prokaryotic L21 protein HQ398_RS00470 PF01016 Ribosomal L27 protein HQ398_RS00475 PF01018 GTP1/OBG HQ398_RS00475 PF01926 50S ribosome-binding GTPase HQ398_RS00480 PF07670 Nucleoside recognition HQ398_RS00485 PF00296 Luciferase-like monooxygenase HQ398_RS00495 PF00149 Calcineurin-like phosphoesterase HQ398_RS00500 PF04379 ApaG domain HQ398_RS00505 PF00398 Ribosomal RNA adenine dimethylase HQ398_RS00510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ398_RS00515 PF00639 PPIC-type PPIASE domain HQ398_RS00515 PF09312 SurA N-terminal domain HQ398_RS00520 PF04453 LPS transport system D HQ398_RS00520 PF03968 OstA-like protein HQ398_RS00525 PF01636 Phosphotransferase enzyme family HQ398_RS00530 PF00483 Nucleotidyl transferase HQ398_RS00535 PF00226 DnaJ domain HQ398_RS00535 PF05099 Tellurite resistance protein TerB HQ398_RS00540 PF01546 Peptidase family M20/M25/M40 HQ398_RS00540 PF07687 Peptidase dimerisation domain HQ398_RS00545 PF00156 Phosphoribosyl transferase domain HQ398_RS00550 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HQ398_RS00555 PF07417 Sigma factor-binding transcriptional regulator Crl HQ398_RS00560 PF00696 Amino acid kinase family HQ398_RS00560 PF01472 PUA domain HQ398_RS00565 PF00171 Aldehyde dehydrogenase family HQ398_RS00580 PF09905 DNA-binding protein VF530 HQ398_RS00585 PF02666 Phosphatidylserine decarboxylase HQ398_RS00590 PF03193 RsgA GTPase HQ398_RS00595 PF00929 Exonuclease HQ398_RS00635 PF00313 'Cold-shock' DNA-binding domain HQ398_RS00645 PF00672 HAMP domain HQ398_RS00645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS00650 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ398_RS00655 PF00860 Permease family HQ398_RS00665 PF00005 ABC transporter HQ398_RS00665 PF12848 ABC transporter HQ398_RS00670 PF12167 Arm DNA-binding domain HQ398_RS00670 PF00589 Phage integrase family HQ398_RS00680 PF00436 Single-strand binding protein family HQ398_RS00870 PF02899 Phage integrase, N-terminal SAM-like domain HQ398_RS00870 PF00589 Phage integrase family HQ398_RS00920 PF03472 Autoinducer binding domain HQ398_RS00920 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS00955 PF03354 Phage Terminase HQ398_RS01010 PF04984 Phage tail sheath protein subtilisin-like domain HQ398_RS01010 PF17482 Phage tail sheath C-terminal domain HQ398_RS01055 PF04865 Baseplate J-like protein HQ398_RS01060 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) HQ398_RS01095 PF01048 Phosphorylase superfamily HQ398_RS01100 PF01464 Transglycosylase SLT domain HQ398_RS01110 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) HQ398_RS01115 PF01370 NAD dependent epimerase/dehydratase family HQ398_RS01120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ398_RS01120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ398_RS01120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ398_RS01135 PF00005 ABC transporter HQ398_RS01135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS01140 PF00005 ABC transporter HQ398_RS01140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS01145 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS01145 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_RS01150 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS01155 PF17969 L,D-transpeptidase C-terminal domain HQ398_RS01155 PF03734 L,D-transpeptidase catalytic domain HQ398_RS01165 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS01165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ398_RS01170 PF00881 Nitroreductase family HQ398_RS01175 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS01175 PF12464 Maltose acetyltransferase HQ398_RS01180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_RS01180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_RS01190 PF00107 Zinc-binding dehydrogenase HQ398_RS01190 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_RS01195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS01195 PF03466 LysR substrate binding domain HQ398_RS01200 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ398_RS01200 PF00367 phosphotransferase system, EIIB HQ398_RS01200 PF02378 Phosphotransferase system, EIIC HQ398_RS01205 PF00474 Sodium:solute symporter family HQ398_RS01210 PF06196 Protein of unknown function (DUF997) HQ398_RS01215 PF02785 Biotin carboxylase C-terminal domain HQ398_RS01215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ398_RS01215 PF00289 Biotin carboxylase, N-terminal domain HQ398_RS01220 PF00364 Biotin-requiring enzyme HQ398_RS01225 PF01220 Dehydroquinase class II HQ398_RS01230 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ398_RS01230 PF00501 AMP-binding enzyme HQ398_RS01230 PF13193 AMP-binding enzyme C-terminal domain HQ398_RS01240 PF00563 EAL domain HQ398_RS01240 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS01240 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS01245 PF01609 Transposase DDE domain HQ398_RS01260 PF02613 Nitrate reductase delta subunit HQ398_RS01275 PF00464 Serine hydroxymethyltransferase HQ398_RS01285 PF03477 ATP cone domain HQ398_RS01290 PF01872 RibD C-terminal domain HQ398_RS01290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ398_RS01295 PF00677 Lumazine binding domain HQ398_RS01300 PF00925 GTP cyclohydrolase II HQ398_RS01300 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ398_RS01305 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ398_RS01310 PF01029 NusB family HQ398_RS01315 PF00586 AIR synthase related protein, N-terminal domain HQ398_RS01315 PF02769 AIR synthase related protein, C-terminal domain HQ398_RS01320 PF04608 Phosphatidylglycerophosphatase A HQ398_RS01325 PF00005 ABC transporter HQ398_RS01325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS01330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS01335 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS01340 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_RS01340 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS01345 PF02779 Transketolase, pyrimidine binding domain HQ398_RS01345 PF02780 Transketolase, C-terminal domain HQ398_RS01345 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HQ398_RS01350 PF00348 Polyprenyl synthetase HQ398_RS01355 PF02609 Exonuclease VII small subunit HQ398_RS01360 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS01365 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_RS01365 PF00691 OmpA family HQ398_RS01365 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_RS01365 PF00691 OmpA family HQ398_RS01370 PF03449 Transcription elongation factor, N-terminal HQ398_RS01370 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ398_RS01380 PF01985 CRS1 / YhbY (CRM) domain HQ398_RS01385 PF01728 FtsJ-like methyltransferase HQ398_RS01390 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_RS01390 PF06480 FtsH Extracellular HQ398_RS01390 PF01434 Peptidase family M41 HQ398_RS01390 PF17862 AAA+ lid domain HQ398_RS01395 PF00809 Pterin binding enzyme HQ398_RS01400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ398_RS01400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ398_RS01400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ398_RS01400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ398_RS01405 PF00121 Triosephosphate isomerase HQ398_RS01410 PF03840 Preprotein translocase SecG subunit HQ398_RS01425 PF02576 RimP N-terminal domain HQ398_RS01425 PF17384 RimP C-terminal SH3 domain HQ398_RS01430 PF13184 NusA-like KH domain HQ398_RS01430 PF08529 NusA N-terminal domain HQ398_RS01430 PF00575 S1 RNA binding domain HQ398_RS01435 PF04760 Translation initiation factor IF-2, N-terminal region HQ398_RS01435 PF08364 Bacterial translation initiation factor IF-2 associated region HQ398_RS01435 PF11987 Translation-initiation factor 2 HQ398_RS01435 PF00009 Elongation factor Tu GTP binding domain HQ398_RS01440 PF02033 Ribosome-binding factor A HQ398_RS01445 PF09157 Pseudouridine synthase II TruB, C-terminal HQ398_RS01445 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ398_RS01445 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ398_RS01450 PF00312 Ribosomal protein S15 HQ398_RS01455 PF00575 S1 RNA binding domain HQ398_RS01455 PF00013 KH domain HQ398_RS01455 PF03725 3' exoribonuclease family, domain 2 HQ398_RS01455 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ398_RS01455 PF01138 3' exoribonuclease family, domain 1 HQ398_RS01460 PF01339 CheB methylesterase HQ398_RS01460 PF00072 Response regulator receiver domain HQ398_RS01465 PF03975 CheD chemotactic sensory transduction HQ398_RS01470 PF01739 CheR methyltransferase, SAM binding domain HQ398_RS01470 PF03705 CheR methyltransferase, all-alpha domain HQ398_RS01485 PF12729 Four helix bundle sensory module for signal transduction HQ398_RS01485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS01485 PF00672 HAMP domain HQ398_RS01490 PF01584 CheW-like domain HQ398_RS01490 PF02895 Signal transducing histidine kinase, homodimeric domain HQ398_RS01490 PF07194 P2 response regulator binding domain HQ398_RS01490 PF01627 Hpt domain HQ398_RS01490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS01500 PF00072 Response regulator receiver domain HQ398_RS01505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS01505 PF00672 HAMP domain HQ398_RS01505 PF02743 Cache domain HQ398_RS01510 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ398_RS01510 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ398_RS01515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS01515 PF03466 LysR substrate binding domain HQ398_RS01525 PF12392 Collagenase HQ398_RS01525 PF01136 Peptidase family U32 HQ398_RS01530 PF01609 Transposase DDE domain HQ398_RS01535 PF00149 Calcineurin-like phosphoesterase HQ398_RS01535 PF02872 5'-nucleotidase, C-terminal domain HQ398_RS01555 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HQ398_RS01580 PF00106 short chain dehydrogenase HQ398_RS01585 PF03573 outer membrane porin, OprD family HQ398_RS01590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS01620 PF02661 Fic/DOC family HQ398_RS01620 PF13784 Fic/DOC family N-terminal HQ398_RS01625 PF13438 Domain of unknown function (DUF4113) HQ398_RS01625 PF00817 impB/mucB/samB family HQ398_RS01625 PF11799 impB/mucB/samB family C-terminal domain HQ398_RS01625 PF11798 IMS family HHH motif HQ398_RS01630 PF00717 Peptidase S24-like HQ398_RS01645 PF02384 N-6 DNA Methylase HQ398_RS01645 PF12161 HsdM N-terminal domain HQ398_RS01665 PF13086 AAA domain HQ398_RS01665 PF13087 AAA domain HQ398_RS01665 PF13086 AAA domain HQ398_RS01665 PF13087 AAA domain HQ398_RS01665 PF13195 Protein of unknown function (DUF4011) HQ398_RS01665 PF13195 Protein of unknown function (DUF4011) HQ398_RS01670 PF11867 Domain of unknown function (DUF3387) HQ398_RS01670 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HQ398_RS01670 PF18766 SWI2/SNF2 ATPase HQ398_RS01680 PF04002 RadC-like JAB domain HQ398_RS01725 PF09588 YqaJ-like viral recombinase domain HQ398_RS01755 PF00800 Prephenate dehydratase HQ398_RS01755 PF01817 Chorismate mutase type II HQ398_RS01770 PF06508 Queuosine biosynthesis protein QueC HQ398_RS01785 PF08349 Protein of unknown function (DUF1722) HQ398_RS01790 PF13411 MerR HTH family regulatory protein HQ398_RS01795 PF00875 DNA photolyase HQ398_RS01795 PF03441 FAD binding domain of DNA photolyase HQ398_RS01805 PF00106 short chain dehydrogenase HQ398_RS01850 PF02424 ApbE family HQ398_RS01855 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_RS01855 PF00175 Oxidoreductase NAD-binding domain HQ398_RS01855 PF00970 Oxidoreductase FAD-binding domain HQ398_RS01860 PF02508 Rnf-Nqr subunit, membrane protein HQ398_RS01865 PF02508 Rnf-Nqr subunit, membrane protein HQ398_RS01870 PF04205 FMN-binding domain HQ398_RS01875 PF03116 NQR2, RnfD, RnfE family HQ398_RS01880 PF11973 NQRA C-terminal domain HQ398_RS01880 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ398_RS01885 PF01722 BolA-like protein HQ398_RS01890 PF05175 Methyltransferase small domain HQ398_RS01900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ398_RS01905 PF07690 Major Facilitator Superfamily HQ398_RS01910 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ398_RS01915 PF04461 Protein of unknown function (DUF520) HQ398_RS01920 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ398_RS01920 PF02558 Ketopantoate reductase PanE/ApbA HQ398_RS01925 PF01965 DJ-1/PfpI family HQ398_RS01935 PF11799 impB/mucB/samB family C-terminal domain HQ398_RS01935 PF11798 IMS family HHH motif HQ398_RS01935 PF00817 impB/mucB/samB family HQ398_RS01940 PF00672 HAMP domain HQ398_RS01940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS01945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS01945 PF03466 LysR substrate binding domain HQ398_RS01955 PF04241 Protein of unknown function (DUF423) HQ398_RS01960 PF01728 FtsJ-like methyltransferase HQ398_RS01960 PF18125 RlmM ferredoxin-like domain HQ398_RS01970 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ398_RS01970 PF18324 Hypothetical protein TT1725 HQ398_RS01975 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ398_RS01975 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ398_RS01980 PF11892 Domain of unknown function (DUF3412) HQ398_RS01980 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HQ398_RS01980 PF03641 Possible lysine decarboxylase HQ398_RS01985 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS01995 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ398_RS01995 PF14489 QueF-like protein HQ398_RS02000 PF07348 Syd protein (SUKH-2) HQ398_RS02005 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ398_RS02030 PF04287 tRNA pseudouridine synthase C HQ398_RS02035 PF00849 RNA pseudouridylate synthase HQ398_RS02045 PF02264 LamB porin HQ398_RS02050 PF01609 Transposase DDE domain HQ398_RS02060 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ398_RS02065 PF00367 phosphotransferase system, EIIB HQ398_RS02065 PF02378 Phosphotransferase system, EIIC HQ398_RS02070 PF11944 Protein of unknown function (DUF3461) HQ398_RS02075 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS02075 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_RS02075 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ398_RS02085 PF00557 Metallopeptidase family M24 HQ398_RS02090 PF00318 Ribosomal protein S2 HQ398_RS02095 PF00889 Elongation factor TS HQ398_RS02100 PF00696 Amino acid kinase family HQ398_RS02105 PF01765 Ribosome recycling factor HQ398_RS02110 PF01255 Putative undecaprenyl diphosphate synthase HQ398_RS02120 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ398_RS02120 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ398_RS02120 PF13288 DXP reductoisomerase C-terminal domain HQ398_RS02125 PF17820 PDZ domain HQ398_RS02125 PF02163 Peptidase family M50 HQ398_RS02130 PF01103 Surface antigen HQ398_RS02130 PF07244 Surface antigen variable number repeat HQ398_RS02135 PF03938 Outer membrane protein (OmpH-like) HQ398_RS02140 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ398_RS02140 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS02145 PF07977 FabA-like domain HQ398_RS02150 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ398_RS02150 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS02155 PF02684 Lipid-A-disaccharide synthetase HQ398_RS02160 PF01351 Ribonuclease HII HQ398_RS02165 PF01336 OB-fold nucleic acid binding domain HQ398_RS02165 PF02811 PHP domain HQ398_RS02165 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ398_RS02165 PF14579 Helix-hairpin-helix motif HQ398_RS02165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ398_RS02170 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ398_RS02180 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ398_RS02185 PF01235 Sodium:alanine symporter family HQ398_RS02190 PF11992 Domain of unknown function (DUF3488) HQ398_RS02190 PF13559 Domain of unknown function (DUF4129) HQ398_RS02190 PF01841 Transglutaminase-like superfamily HQ398_RS02205 PF00144 Beta-lactamase HQ398_RS02210 PF07690 Major Facilitator Superfamily HQ398_RS02215 PF03466 LysR substrate binding domain HQ398_RS02215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS02225 PF03466 LysR substrate binding domain HQ398_RS02225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS02235 PF03652 Holliday junction resolvase HQ398_RS02240 PF02622 Uncharacterized ACR, COG1678 HQ398_RS02245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS02245 PF12729 Four helix bundle sensory module for signal transduction HQ398_RS02245 PF00672 HAMP domain HQ398_RS02250 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ398_RS02250 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ398_RS02255 PF04452 RNA methyltransferase HQ398_RS02260 PF04231 Endonuclease I HQ398_RS02265 PF10263 SprT-like family HQ398_RS02265 PF17283 SprT-like zinc ribbon domain HQ398_RS02270 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ398_RS02270 PF02772 S-adenosylmethionine synthetase, central domain HQ398_RS02270 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ398_RS02275 PF02779 Transketolase, pyrimidine binding domain HQ398_RS02275 PF00456 Transketolase, thiamine diphosphate binding domain HQ398_RS02275 PF02780 Transketolase, C-terminal domain HQ398_RS02285 PF01042 Endoribonuclease L-PSP HQ398_RS02290 PF01609 Transposase DDE domain HQ398_RS02305 PF03702 Anhydro-N-acetylmuramic acid kinase HQ398_RS02310 PF08525 Opacity-associated protein A N-terminal motif HQ398_RS02310 PF01551 Peptidase family M23 HQ398_RS02310 PF01476 LysM domain HQ398_RS02315 PF00579 tRNA synthetases class I (W and Y) HQ398_RS02320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS02320 PF03466 LysR substrate binding domain HQ398_RS02325 PF03306 Alpha-acetolactate decarboxylase HQ398_RS02340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS02340 PF03466 LysR substrate binding domain HQ398_RS02355 PF12706 Beta-lactamase superfamily domain HQ398_RS02360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS02360 PF03466 LysR substrate binding domain HQ398_RS02370 PF13302 Acetyltransferase (GNAT) domain HQ398_RS02375 PF16326 ABC transporter C-terminal domain HQ398_RS02375 PF12848 ABC transporter HQ398_RS02375 PF00005 ABC transporter HQ398_RS02380 PF18500 CadC C-terminal domain 1 HQ398_RS02380 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS02385 PF13520 Amino acid permease HQ398_RS02390 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ398_RS02390 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ398_RS02390 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ398_RS02395 PF08543 Phosphomethylpyrimidine kinase HQ398_RS02405 PF01431 Peptidase family M13 HQ398_RS02405 PF05649 Peptidase family M13 HQ398_RS02410 PF11734 TilS substrate C-terminal domain HQ398_RS02410 PF09179 TilS substrate binding domain HQ398_RS02410 PF01171 PP-loop family HQ398_RS02415 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS02420 PF00999 Sodium/hydrogen exchanger family HQ398_RS02420 PF02080 TrkA-C domain HQ398_RS02420 PF02254 TrkA-N domain HQ398_RS02440 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS02440 PF00072 Response regulator receiver domain HQ398_RS02450 PF00128 Alpha amylase, catalytic domain HQ398_RS02465 PF00535 Glycosyl transferase family 2 HQ398_RS02480 PF03734 L,D-transpeptidase catalytic domain HQ398_RS02480 PF01471 Putative peptidoglycan binding domain HQ398_RS02485 PF05951 Bacterial protein of unknown function (DUF882) HQ398_RS02495 PF03458 UPF0126 domain HQ398_RS02505 PF06470 SMC proteins Flexible Hinge Domain HQ398_RS02505 PF02463 RecF/RecN/SMC N terminal domain HQ398_RS02510 PF04354 ZipA, C-terminal FtsZ-binding domain HQ398_RS02515 PF12826 Helix-hairpin-helix motif HQ398_RS02515 PF00533 BRCA1 C Terminus (BRCT) domain HQ398_RS02515 PF03120 NAD-dependent DNA ligase OB-fold domain HQ398_RS02515 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ398_RS02515 PF01653 NAD-dependent DNA ligase adenylation domain HQ398_RS02525 PF03477 ATP cone domain HQ398_RS02525 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ398_RS02555 PF00529 HlyD membrane-fusion protein of T1SS HQ398_RS02555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS02560 PF01047 MarR family HQ398_RS02575 PF03949 Malic enzyme, NAD binding domain HQ398_RS02575 PF00390 Malic enzyme, N-terminal domain HQ398_RS02580 PF00989 PAS fold HQ398_RS02580 PF17203 Single cache domain 3 HQ398_RS02580 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ398_RS02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS02585 PF00072 Response regulator receiver domain HQ398_RS02585 PF12431 Transcriptional regulator HQ398_RS02590 PF00892 EamA-like transporter family HQ398_RS02600 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS02600 PF17158 Membrane-associated sensor, integral membrane domain HQ398_RS02605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_RS02610 PF00072 Response regulator receiver domain HQ398_RS02610 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS02615 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS02615 PF00989 PAS fold HQ398_RS02615 PF11808 Phosphate regulon sensor protein PhoR HQ398_RS02620 PF12849 PBP superfamily domain HQ398_RS02625 PF01435 Peptidase family M48 HQ398_RS02635 PF00480 ROK family HQ398_RS02640 PF03932 CutC family HQ398_RS02645 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ398_RS02645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_RS02660 PF00293 NUDIX domain HQ398_RS02670 PF00462 Glutaredoxin HQ398_RS02670 PF08534 Redoxin HQ398_RS02675 PF01699 Sodium/calcium exchanger protein HQ398_RS02680 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ398_RS02680 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ398_RS02685 PF01235 Sodium:alanine symporter family HQ398_RS02695 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS02700 PF10692 Protein of unknown function (DUF2498) HQ398_RS02705 PF01554 MatE HQ398_RS02710 PF12833 Helix-turn-helix domain HQ398_RS02715 PF03949 Malic enzyme, NAD binding domain HQ398_RS02715 PF00390 Malic enzyme, N-terminal domain HQ398_RS02725 PF00691 OmpA family HQ398_RS02725 PF01389 OmpA-like transmembrane domain HQ398_RS02730 PF00691 OmpA family HQ398_RS02730 PF01389 OmpA-like transmembrane domain HQ398_RS02745 PF00209 Sodium:neurotransmitter symporter family HQ398_RS02750 PF01734 Patatin-like phospholipase HQ398_RS02755 PF17158 Membrane-associated sensor, integral membrane domain HQ398_RS02755 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS02760 PF00529 HlyD membrane-fusion protein of T1SS HQ398_RS02760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS02770 PF11842 Domain of unknown function (DUF3362) HQ398_RS02770 PF08497 Radical SAM N-terminal HQ398_RS02770 PF04055 Radical SAM superfamily HQ398_RS02785 PF04151 Bacterial pre-peptidase C-terminal domain HQ398_RS02785 PF04389 Peptidase family M28 HQ398_RS02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS02805 PF03466 LysR substrate binding domain HQ398_RS02815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ398_RS02820 PF04358 DsrC like protein HQ398_RS02825 PF12805 FUSC-like inner membrane protein yccS HQ398_RS02830 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ398_RS02840 PF04794 YdjC-like protein HQ398_RS02845 PF02056 Family 4 glycosyl hydrolase HQ398_RS02845 PF11975 Family 4 glycosyl hydrolase C-terminal domain HQ398_RS02850 PF07883 Cupin domain HQ398_RS02850 PF12833 Helix-turn-helix domain HQ398_RS02855 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HQ398_RS02860 PF00232 Glycosyl hydrolase family 1 HQ398_RS02865 PF02378 Phosphotransferase system, EIIC HQ398_RS02870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_RS02875 PF01203 Type II secretion system (T2SS), protein N HQ398_RS02880 PF04612 Type II secretion system (T2SS), protein M HQ398_RS02885 PF12693 GspL periplasmic domain HQ398_RS02885 PF05134 Type II secretion system (T2SS), protein L HQ398_RS02890 PF03934 Type II secretion system (T2SS), protein K HQ398_RS02895 PF11612 Type II secretion system (T2SS), protein J HQ398_RS02895 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS02900 PF02501 Type II secretion system (T2SS), protein I HQ398_RS02900 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS02905 PF12019 Type II transport protein GspH HQ398_RS02905 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS02910 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS02910 PF08334 Type II secretion system (T2SS), protein G HQ398_RS02915 PF00482 Type II secretion system (T2SS), protein F HQ398_RS02920 PF00437 Type II/IV secretion system protein HQ398_RS02925 PF00263 Bacterial type II and III secretion system protein HQ398_RS02925 PF03958 Bacterial type II/III secretion system short domain HQ398_RS02930 PF11356 Type II secretion system protein C HQ398_RS02935 PF16537 Type II secretion system protein B HQ398_RS02940 PF13401 AAA domain HQ398_RS02940 PF01471 Putative peptidoglycan binding domain HQ398_RS02945 PF00672 HAMP domain HQ398_RS02945 PF01966 HD domain HQ398_RS02950 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ398_RS02950 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ398_RS02960 PF01434 Peptidase family M41 HQ398_RS02960 PF17862 AAA+ lid domain HQ398_RS02960 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_RS02965 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS02970 PF00381 PTS HPr component phosphorylation site HQ398_RS02975 PF05524 PEP-utilising enzyme, N-terminal HQ398_RS02975 PF00391 PEP-utilising enzyme, mobile domain HQ398_RS02975 PF02896 PEP-utilising enzyme, TIM barrel domain HQ398_RS02980 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ398_RS02985 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS02985 PF08448 PAS fold HQ398_RS02990 PF00924 Mechanosensitive ion channel HQ398_RS02990 PF12795 Mechanosensitive ion channel porin domain HQ398_RS02990 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ398_RS02995 PF00224 Pyruvate kinase, barrel domain HQ398_RS02995 PF02887 Pyruvate kinase, alpha/beta domain HQ398_RS03005 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ398_RS03010 PF13476 AAA domain HQ398_RS03015 PF00149 Calcineurin-like phosphoesterase HQ398_RS03015 PF12320 Type 5 capsule protein repressor C-terminal domain HQ398_RS03025 PF04381 Putative exonuclease, RdgC HQ398_RS03030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_RS03030 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ398_RS03035 PF02690 Na+/Pi-cotransporter HQ398_RS03045 PF00324 Amino acid permease HQ398_RS03055 PF00324 Amino acid permease HQ398_RS03060 PF00202 Aminotransferase class-III HQ398_RS03065 PF00171 Aldehyde dehydrogenase family HQ398_RS03070 PF07883 Cupin domain HQ398_RS03070 PF01381 Helix-turn-helix HQ398_RS03075 PF01266 FAD dependent oxidoreductase HQ398_RS03100 PF05656 Protein of unknown function (DUF805) HQ398_RS03105 PF01609 Transposase DDE domain HQ398_RS03120 PF00072 Response regulator receiver domain HQ398_RS03120 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS03155 PF00664 ABC transporter transmembrane region HQ398_RS03155 PF00005 ABC transporter HQ398_RS03160 PF00664 ABC transporter transmembrane region HQ398_RS03160 PF00005 ABC transporter HQ398_RS03175 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS03175 PF00072 Response regulator receiver domain HQ398_RS03185 PF03737 Aldolase/RraA HQ398_RS03200 PF01022 Bacterial regulatory protein, arsR family HQ398_RS03205 PF01758 Sodium Bile acid symporter family HQ398_RS03210 PF03960 ArsC family HQ398_RS03215 PF07670 Nucleoside recognition HQ398_RS03215 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_RS03215 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_RS03220 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ398_RS03225 PF01609 Transposase DDE domain HQ398_RS03230 PF01609 Transposase DDE domain HQ398_RS03240 PF00290 Tryptophan synthase alpha chain HQ398_RS03245 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS03250 PF00218 Indole-3-glycerol phosphate synthase HQ398_RS03250 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ398_RS03255 PF02885 Glycosyl transferase family, helical bundle domain HQ398_RS03255 PF00591 Glycosyl transferase family, a/b domain HQ398_RS03260 PF02885 Glycosyl transferase family, helical bundle domain HQ398_RS03260 PF00591 Glycosyl transferase family, a/b domain HQ398_RS03260 PF00117 Glutamine amidotransferase class-I HQ398_RS03265 PF00425 chorismate binding enzyme HQ398_RS03265 PF04715 Anthranilate synthase component I, N terminal region HQ398_RS03270 PF02811 PHP domain HQ398_RS03275 PF01300 Telomere recombination HQ398_RS03280 PF02616 Segregation and condensation protein ScpA HQ398_RS03285 PF04079 Segregation and condensation complex subunit ScpB HQ398_RS03290 PF01479 S4 domain HQ398_RS03290 PF00849 RNA pseudouridylate synthase HQ398_RS03295 PF17287 POTRA domain HQ398_RS03295 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HQ398_RS03295 PF08479 POTRA domain, ShlB-type HQ398_RS03300 PF04829 Pre-toxin domain with VENN motif HQ398_RS03300 PF15526 Novel toxin 21 HQ398_RS03300 PF05860 haemagglutination activity domain HQ398_RS03300 PF13332 Hemagglutinin repeat HQ398_RS03300 PF05594 Haemagluttinin repeat HQ398_RS03320 PF18624 CDI immunity protein HQ398_RS03325 PF02641 Uncharacterized ACR, COG1993 HQ398_RS03345 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HQ398_RS03350 PF00588 SpoU rRNA Methylase family HQ398_RS03355 PF00696 Amino acid kinase family HQ398_RS03355 PF01842 ACT domain HQ398_RS03355 PF13840 ACT domain HQ398_RS03355 PF00742 Homoserine dehydrogenase HQ398_RS03355 PF03447 Homoserine dehydrogenase, NAD binding domain HQ398_RS03365 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS03365 PF14821 Threonine synthase N terminus HQ398_RS03385 PF01048 Phosphorylase superfamily HQ398_RS03410 PF04055 Radical SAM superfamily HQ398_RS03410 PF18693 TRAM domain HQ398_RS03410 PF00919 Uncharacterized protein family UPF0004 HQ398_RS03415 PF00072 Response regulator receiver domain HQ398_RS03435 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ398_RS03435 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS03440 PF00529 HlyD membrane-fusion protein of T1SS HQ398_RS03440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS03450 PF16363 GDP-mannose 4,6 dehydratase HQ398_RS03455 PF00483 Nucleotidyl transferase HQ398_RS03460 PF05523 WxcM-like, C-terminal HQ398_RS03465 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS03470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ398_RS03480 PF00535 Glycosyl transferase family 2 HQ398_RS03495 PF01757 Acyltransferase family HQ398_RS03500 PF03414 Glycosyltransferase family 6 HQ398_RS03510 PF16363 GDP-mannose 4,6 dehydratase HQ398_RS03515 PF01370 NAD dependent epimerase/dehydratase family HQ398_RS03520 PF00293 NUDIX domain HQ398_RS03525 PF01050 Mannose-6-phosphate isomerase HQ398_RS03525 PF00483 Nucleotidyl transferase HQ398_RS03530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ398_RS03530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ398_RS03530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ398_RS03530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ398_RS03535 PF00535 Glycosyl transferase family 2 HQ398_RS03540 PF02397 Bacterial sugar transferase HQ398_RS03545 PF04321 RmlD substrate binding domain HQ398_RS03550 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ398_RS03560 PF00816 H-NS histone family HQ398_RS03565 PF01609 Transposase DDE domain HQ398_RS03570 PF02321 Outer membrane efflux protein HQ398_RS03575 PF12704 MacB-like periplasmic core domain HQ398_RS03575 PF00005 ABC transporter HQ398_RS03575 PF02687 FtsX-like permease family HQ398_RS03580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS03585 PF02833 DHHA2 domain HQ398_RS03585 PF01368 DHH family HQ398_RS03590 PF02463 RecF/RecN/SMC N terminal domain HQ398_RS03595 PF11975 Family 4 glycosyl hydrolase C-terminal domain HQ398_RS03595 PF02056 Family 4 glycosyl hydrolase HQ398_RS03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS03600 PF03466 LysR substrate binding domain HQ398_RS03605 PF01513 ATP-NAD kinase HQ398_RS03610 PF01025 GrpE HQ398_RS03615 PF00012 Hsp70 protein HQ398_RS03620 PF00226 DnaJ domain HQ398_RS03620 PF00684 DnaJ central domain HQ398_RS03620 PF01556 DnaJ C terminal domain HQ398_RS03645 PF04143 Sulphur transport HQ398_RS03660 PF00873 AcrB/AcrD/AcrF family HQ398_RS03665 PF13426 PAS domain HQ398_RS03665 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS03665 PF00563 EAL domain HQ398_RS03670 PF03099 Biotin/lipoate A/B protein ligase family HQ398_RS03670 PF10437 Bacterial lipoate protein ligase C-terminus HQ398_RS03680 PF13460 NAD(P)H-binding HQ398_RS03685 PF04355 SmpA / OmlA family HQ398_RS03690 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS03695 PF01048 Phosphorylase superfamily HQ398_RS03700 PF00849 RNA pseudouridylate synthase HQ398_RS03705 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ398_RS03720 PF07509 Protein of unknown function (DUF1523) HQ398_RS03730 PF12729 Four helix bundle sensory module for signal transduction HQ398_RS03730 PF00672 HAMP domain HQ398_RS03730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS03735 PF01810 LysE type translocator HQ398_RS03740 PF03471 Transporter associated domain HQ398_RS03740 PF00999 Sodium/hydrogen exchanger family HQ398_RS03740 PF02080 TrkA-C domain HQ398_RS03750 PF00999 Sodium/hydrogen exchanger family HQ398_RS03750 PF02080 TrkA-C domain HQ398_RS03750 PF03471 Transporter associated domain HQ398_RS03760 PF02557 D-alanyl-D-alanine carboxypeptidase HQ398_RS03765 PF07687 Peptidase dimerisation domain HQ398_RS03765 PF01546 Peptidase family M20/M25/M40 HQ398_RS03770 PF03960 ArsC family HQ398_RS03780 PF01609 Transposase DDE domain HQ398_RS03785 PF03606 C4-dicarboxylate anaerobic carrier HQ398_RS03790 PF07687 Peptidase dimerisation domain HQ398_RS03790 PF01546 Peptidase family M20/M25/M40 HQ398_RS03800 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ398_RS03810 PF00152 tRNA synthetases class II (D, K and N) HQ398_RS03810 PF01336 OB-fold nucleic acid binding domain HQ398_RS03825 PF00202 Aminotransferase class-III HQ398_RS03830 PF04055 Radical SAM superfamily HQ398_RS03830 PF06968 Biotin and Thiamin Synthesis associated domain HQ398_RS03835 PF00155 Aminotransferase class I and II HQ398_RS03840 PF08241 Methyltransferase domain HQ398_RS03840 PF12697 Alpha/beta hydrolase family HQ398_RS03850 PF01435 Peptidase family M48 HQ398_RS03855 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_RS03855 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_RS03855 PF03473 MOSC domain HQ398_RS03855 PF03476 MOSC N-terminal beta barrel domain HQ398_RS03855 PF03476 MOSC N-terminal beta barrel domain HQ398_RS03855 PF03473 MOSC domain HQ398_RS03860 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS03860 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ398_RS03860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ398_RS03865 PF10371 Domain of unknown function HQ398_RS03865 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ398_RS03865 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ398_RS03865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_RS03865 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ398_RS03875 PF01370 NAD dependent epimerase/dehydratase family HQ398_RS03880 PF03061 Thioesterase superfamily HQ398_RS03890 PF03372 Endonuclease/Exonuclease/phosphatase family HQ398_RS03895 PF00462 Glutaredoxin HQ398_RS03900 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HQ398_RS03905 PF04851 Type III restriction enzyme, res subunit HQ398_RS03905 PF00271 Helicase conserved C-terminal domain HQ398_RS03910 PF00529 HlyD membrane-fusion protein of T1SS HQ398_RS03910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS03915 PF11742 Protein of unknown function (DUF3302) HQ398_RS03920 PF02554 Carbon starvation protein CstA HQ398_RS03925 PF00072 Response regulator receiver domain HQ398_RS03925 PF04397 LytTr DNA-binding domain HQ398_RS03935 PF01966 HD domain HQ398_RS03940 PF08019 Phosphoethanolamine transferase EptA/EptB HQ398_RS03940 PF00884 Sulfatase HQ398_RS03945 PF01047 MarR family HQ398_RS03945 PF00480 ROK family HQ398_RS03950 PF01979 Amidohydrolase family HQ398_RS03955 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ398_RS03960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ398_RS03960 PF00367 phosphotransferase system, EIIB HQ398_RS03960 PF02378 Phosphotransferase system, EIIC HQ398_RS03965 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ398_RS03965 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HQ398_RS03965 PF02838 Glycosyl hydrolase family 20, domain 2 HQ398_RS03965 PF03173 Putative carbohydrate binding domain HQ398_RS03970 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ398_RS03970 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ398_RS03975 PF01475 Ferric uptake regulator family HQ398_RS03985 PF00258 Flavodoxin HQ398_RS03990 PF01402 Ribbon-helix-helix protein, copG family HQ398_RS04005 PF17206 SeqA protein N-terminal domain HQ398_RS04005 PF03925 SeqA protein C-terminal domain HQ398_RS04010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ398_RS04010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ398_RS04010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ398_RS04010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ398_RS04015 PF13406 Transglycosylase SLT domain HQ398_RS04020 PF01066 CDP-alcohol phosphatidyltransferase HQ398_RS04025 PF00005 ABC transporter HQ398_RS04035 PF13416 Bacterial extracellular solute-binding protein HQ398_RS04040 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS04040 PF00403 Heavy-metal-associated domain HQ398_RS04040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_RS04045 PF02627 Carboxymuconolactone decarboxylase family HQ398_RS04065 PF07244 Surface antigen variable number repeat HQ398_RS04065 PF17243 POTRA domain TamA domain 1 HQ398_RS04065 PF01103 Surface antigen HQ398_RS04090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ398_RS04100 PF14718 Soluble lytic murein transglycosylase L domain HQ398_RS04100 PF01464 Transglycosylase SLT domain HQ398_RS04105 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS04110 PF00793 DAHP synthetase I family HQ398_RS04115 PF07715 TonB-dependent Receptor Plug Domain HQ398_RS04115 PF00593 TonB dependent receptor HQ398_RS04120 PF00425 chorismate binding enzyme HQ398_RS04125 PF13193 AMP-binding enzyme C-terminal domain HQ398_RS04125 PF00501 AMP-binding enzyme HQ398_RS04130 PF00857 Isochorismatase family HQ398_RS04130 PF00550 Phosphopantetheine attachment site HQ398_RS04150 PF00676 Dehydrogenase E1 component HQ398_RS04155 PF02780 Transketolase, C-terminal domain HQ398_RS04155 PF02779 Transketolase, pyrimidine binding domain HQ398_RS04160 PF02817 e3 binding domain HQ398_RS04160 PF00364 Biotin-requiring enzyme HQ398_RS04160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ398_RS04165 PF00313 'Cold-shock' DNA-binding domain HQ398_RS04195 PF00892 EamA-like transporter family HQ398_RS04200 PF00455 DeoR C terminal sensor domain HQ398_RS04200 PF08220 DeoR-like helix-turn-helix domain HQ398_RS04205 PF01228 Glycine radical HQ398_RS04205 PF02901 Pyruvate formate lyase-like HQ398_RS04210 PF04055 Radical SAM superfamily HQ398_RS04215 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ398_RS04225 PF11871 Domain of unknown function (DUF3391) HQ398_RS04225 PF01966 HD domain HQ398_RS04230 PF01479 S4 domain HQ398_RS04230 PF00849 RNA pseudouridylate synthase HQ398_RS04240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS04245 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ398_RS04260 PF13144 Chaperone for flagella basal body P-ring formation HQ398_RS04265 PF00072 Response regulator receiver domain HQ398_RS04265 PF01584 CheW-like domain HQ398_RS04270 PF01739 CheR methyltransferase, SAM binding domain HQ398_RS04270 PF03705 CheR methyltransferase, all-alpha domain HQ398_RS04275 PF00460 Flagella basal body rod protein HQ398_RS04280 PF00460 Flagella basal body rod protein HQ398_RS04280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS04285 PF13861 FlgD Tudor-like domain HQ398_RS04285 PF03963 Flagellar hook capping protein - N-terminal region HQ398_RS04285 PF13860 FlgD Ig-like domain HQ398_RS04290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS04290 PF07559 Flagellar basal body protein FlaE HQ398_RS04290 PF00460 Flagella basal body rod protein HQ398_RS04295 PF00460 Flagella basal body rod protein HQ398_RS04295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS04300 PF00460 Flagella basal body rod protein HQ398_RS04300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS04305 PF02107 Flagellar L-ring protein HQ398_RS04310 PF02119 Flagellar P-ring protein HQ398_RS04315 PF10135 Rod binding protein HQ398_RS04315 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HQ398_RS04320 PF07196 Flagellin hook IN motif HQ398_RS04320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS04325 PF00669 Bacterial flagellin N-terminal helical region HQ398_RS04330 PF00571 CBS domain HQ398_RS04330 PF01769 Divalent cation transporter HQ398_RS04330 PF03448 MgtE intracellular N domain HQ398_RS04335 PF02541 Ppx/GppA phosphatase family HQ398_RS04340 PF02503 Polyphosphate kinase middle domain HQ398_RS04340 PF13090 Polyphosphate kinase C-terminal domain 2 HQ398_RS04340 PF17941 Polyphosphate kinase C-terminal domain 1 HQ398_RS04340 PF13089 Polyphosphate kinase N-terminal domain HQ398_RS04345 PF01842 ACT domain HQ398_RS04355 PF06490 Flagellar regulatory protein FleQ HQ398_RS04355 PF02954 Bacterial regulatory protein, Fis family HQ398_RS04355 PF00158 Sigma-54 interaction domain HQ398_RS04360 PF13188 PAS domain HQ398_RS04360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS04360 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS04370 PF01784 NIF3 (NGG1p interacting factor 3) HQ398_RS04375 PF00551 Formyl transferase HQ398_RS04380 PF00586 AIR synthase related protein, N-terminal domain HQ398_RS04380 PF02769 AIR synthase related protein, C-terminal domain HQ398_RS04395 PF00308 Bacterial dnaA protein HQ398_RS04400 PF00463 Isocitrate lyase family HQ398_RS04405 PF01274 Malate synthase HQ398_RS04425 PF14437 MafB19-like deaminase HQ398_RS04430 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS04435 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS04440 PF00005 ABC transporter HQ398_RS04445 PF01895 PhoU domain HQ398_RS04450 PF03471 Transporter associated domain HQ398_RS04450 PF01595 Cyclin M transmembrane N-terminal domain HQ398_RS04450 PF00571 CBS domain HQ398_RS04460 PF04116 Fatty acid hydroxylase superfamily HQ398_RS04470 PF00005 ABC transporter HQ398_RS04475 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS04480 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS04485 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS04490 PF07690 Major Facilitator Superfamily HQ398_RS04495 PF05231 MASE1 HQ398_RS04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS04495 PF07730 Histidine kinase HQ398_RS04500 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS04500 PF00072 Response regulator receiver domain HQ398_RS04505 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ398_RS04505 PF14760 Rnk N-terminus HQ398_RS04520 PF00245 Alkaline phosphatase HQ398_RS04525 PF00245 Alkaline phosphatase HQ398_RS04530 PF01926 50S ribosome-binding GTPase HQ398_RS04535 PF07690 Major Facilitator Superfamily HQ398_RS04540 PF00850 Histone deacetylase domain HQ398_RS04550 PF06733 DEAD_2 HQ398_RS04550 PF13307 Helicase C-terminal domain HQ398_RS04560 PF01817 Chorismate mutase type II HQ398_RS04560 PF02153 Prephenate dehydrogenase HQ398_RS04565 PF00793 DAHP synthetase I family HQ398_RS04570 PF00483 Nucleotidyl transferase HQ398_RS04575 PF02355 Protein export membrane protein HQ398_RS04575 PF07549 SecD/SecF GG Motif HQ398_RS04580 PF02355 Protein export membrane protein HQ398_RS04580 PF13721 SecD export protein N-terminal TM region HQ398_RS04580 PF07549 SecD/SecF GG Motif HQ398_RS04615 PF01230 HIT domain HQ398_RS04620 PF00672 HAMP domain HQ398_RS04620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS04630 PF01979 Amidohydrolase family HQ398_RS04645 PF00375 Sodium:dicarboxylate symporter family HQ398_RS04660 PF01432 Peptidase family M3 HQ398_RS04660 PF08439 Oligopeptidase F HQ398_RS04665 PF00860 Permease family HQ398_RS04670 PF05728 Uncharacterised protein family (UPF0227) HQ398_RS04675 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS04685 PF04055 Radical SAM superfamily HQ398_RS04690 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS04690 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS04690 PF00563 EAL domain HQ398_RS04695 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS04695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_RS04710 PF06832 Penicillin-Binding Protein C-terminus Family HQ398_RS04710 PF00912 Transglycosylase HQ398_RS04710 PF00905 Penicillin binding protein transpeptidase domain HQ398_RS04720 PF02568 Thiamine biosynthesis protein (ThiI) HQ398_RS04720 PF02926 THUMP domain HQ398_RS04730 PF03458 UPF0126 domain HQ398_RS04735 PF00669 Bacterial flagellin N-terminal helical region HQ398_RS04735 PF00700 Bacterial flagellin C-terminal helical region HQ398_RS04740 PF07196 Flagellin hook IN motif HQ398_RS04740 PF00669 Bacterial flagellin N-terminal helical region HQ398_RS04740 PF00700 Bacterial flagellin C-terminal helical region HQ398_RS04750 PF07196 Flagellin hook IN motif HQ398_RS04750 PF07195 Flagellar hook-associated protein 2 C-terminus HQ398_RS04750 PF02465 Flagellar hook-associated protein 2 N-terminus HQ398_RS04755 PF02561 Flagellar protein FliS HQ398_RS04780 PF03102 NeuB family HQ398_RS04780 PF08666 SAF domain HQ398_RS04790 PF00202 Aminotransferase class-III HQ398_RS04795 PF02348 Cytidylyltransferase HQ398_RS04805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ398_RS04810 PF02719 Polysaccharide biosynthesis protein HQ398_RS04815 PF01497 Periplasmic binding protein HQ398_RS04825 PF01048 Phosphorylase superfamily HQ398_RS04830 PF02535 ZIP Zinc transporter HQ398_RS04835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS04835 PF00672 HAMP domain HQ398_RS04840 PF00459 Inositol monophosphatase family HQ398_RS04850 PF00043 Glutathione S-transferase, C-terminal domain HQ398_RS04850 PF02798 Glutathione S-transferase, N-terminal domain HQ398_RS04855 PF07690 Major Facilitator Superfamily HQ398_RS04865 PF02634 FdhD/NarQ family HQ398_RS04870 PF00384 Molybdopterin oxidoreductase HQ398_RS04880 PF05164 Cell division protein ZapA HQ398_RS04885 PF03695 Uncharacterised protein family (UPF0149) HQ398_RS04890 PF01494 FAD binding domain HQ398_RS04895 PF01494 FAD binding domain HQ398_RS04900 PF01571 Aminomethyltransferase folate-binding domain HQ398_RS04900 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ398_RS04905 PF01597 Glycine cleavage H-protein HQ398_RS04910 PF02347 Glycine cleavage system P-protein HQ398_RS04915 PF12161 HsdM N-terminal domain HQ398_RS04915 PF02384 N-6 DNA Methylase HQ398_RS04920 PF09722 Protein of unknown function (DUF2384) HQ398_RS04940 PF12419 SNF2 Helicase protein HQ398_RS04940 PF00271 Helicase conserved C-terminal domain HQ398_RS04940 PF00176 SNF2 family N-terminal domain HQ398_RS04950 PF08447 PAS fold HQ398_RS04950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS04965 PF00324 Amino acid permease HQ398_RS04975 PF03618 Kinase/pyrophosphorylase HQ398_RS04980 PF02896 PEP-utilising enzyme, TIM barrel domain HQ398_RS04980 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ398_RS04980 PF00391 PEP-utilising enzyme, mobile domain HQ398_RS04990 PF01483 Proprotein convertase P-domain HQ398_RS04990 PF00082 Subtilase family HQ398_RS04995 PF03180 NLPA lipoprotein HQ398_RS05000 PF11893 Domain of unknown function (DUF3413) HQ398_RS05000 PF00884 Sulfatase HQ398_RS05005 PF07208 Protein of unknown function (DUF1414) HQ398_RS05010 PF04245 37-kD nucleoid-associated bacterial protein HQ398_RS05015 PF01547 Bacterial extracellular solute-binding protein HQ398_RS05020 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS05020 PF14785 Maltose transport system permease protein MalF P2 domain HQ398_RS05025 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS05030 PF00005 ABC transporter HQ398_RS05030 PF08402 TOBE domain HQ398_RS05040 PF00561 alpha/beta hydrolase fold HQ398_RS05050 PF01594 AI-2E family transporter HQ398_RS05055 PF01206 Sulfurtransferase TusA HQ398_RS05060 PF01435 Peptidase family M48 HQ398_RS05060 PF07720 Tetratricopeptide repeat HQ398_RS05065 PF00578 AhpC/TSA family HQ398_RS05070 PF03960 ArsC family HQ398_RS05080 PF04336 Acyl carrier protein phosphodiesterase HQ398_RS05085 PF01979 Amidohydrolase family HQ398_RS05090 PF03956 Lysine exporter LysO HQ398_RS05095 PF00005 ABC transporter HQ398_RS05100 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS05105 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS05110 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS05115 PF00849 RNA pseudouridylate synthase HQ398_RS05140 PF14497 Glutathione S-transferase, C-terminal domain HQ398_RS05140 PF02798 Glutathione S-transferase, N-terminal domain HQ398_RS05145 PF13537 Glutamine amidotransferase domain HQ398_RS05145 PF00733 Asparagine synthase HQ398_RS05155 PF02254 TrkA-N domain HQ398_RS05155 PF00999 Sodium/hydrogen exchanger family HQ398_RS05160 PF13344 Haloacid dehalogenase-like hydrolase HQ398_RS05165 PF00962 Adenosine/AMP deaminase HQ398_RS05170 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_RS05170 PF00107 Zinc-binding dehydrogenase HQ398_RS05175 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ398_RS05190 PF13183 4Fe-4S dicluster domain HQ398_RS05190 PF02913 FAD linked oxidases, C-terminal domain HQ398_RS05190 PF01565 FAD binding domain HQ398_RS05200 PF03061 Thioesterase superfamily HQ398_RS05205 PF00271 Helicase conserved C-terminal domain HQ398_RS05205 PF00270 DEAD/DEAH box helicase HQ398_RS05205 PF03880 DbpA RNA binding domain HQ398_RS05215 PF00563 EAL domain HQ398_RS05215 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS05215 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS05215 PF13188 PAS domain HQ398_RS05220 PF03553 Na+/H+ antiporter family HQ398_RS05220 PF13726 Na+-H+ antiporter family HQ398_RS05225 PF00929 Exonuclease HQ398_RS05230 PF01569 PAP2 superfamily HQ398_RS05240 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ398_RS05240 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ398_RS05250 PF01416 tRNA pseudouridine synthase HQ398_RS05255 PF01039 Carboxyl transferase domain HQ398_RS05255 PF17848 Acetyl-coA carboxylase zinc finger domain HQ398_RS05260 PF08245 Mur ligase middle domain HQ398_RS05260 PF02875 Mur ligase family, glutamate ligase domain HQ398_RS05265 PF05036 Sporulation related domain HQ398_RS05270 PF01906 Putative heavy-metal-binding HQ398_RS05280 PF10414 Sirohaem synthase dimerisation region HQ398_RS05280 PF14824 Sirohaem biosynthesis protein central HQ398_RS05280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_RS05285 PF13187 4Fe-4S dicluster domain HQ398_RS05285 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ398_RS05285 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ398_RS05290 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HQ398_RS05290 PF00175 Oxidoreductase NAD-binding domain HQ398_RS05295 PF17179 4Fe-4S dicluster domain HQ398_RS05300 PF01734 Patatin-like phospholipase HQ398_RS05305 PF02016 LD-carboxypeptidase N-terminal domain HQ398_RS05305 PF17676 LD-carboxypeptidase C-terminal domain HQ398_RS05310 PF00884 Sulfatase HQ398_RS05320 PF00696 Amino acid kinase family HQ398_RS05320 PF01842 ACT domain HQ398_RS05330 PF01625 Peptide methionine sulfoxide reductase HQ398_RS05350 PF00561 alpha/beta hydrolase fold HQ398_RS05355 PF08447 PAS fold HQ398_RS05355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS05385 PF01593 Flavin containing amine oxidoreductase HQ398_RS05390 PF03239 Iron permease FTR1 family HQ398_RS05410 PF00589 Phage integrase family HQ398_RS05410 PF13356 Arm DNA-binding domain HQ398_RS05425 PF01740 STAS domain HQ398_RS05425 PF00916 Sulfate permease family HQ398_RS05435 PF05638 Type VI secretion system effector, Hcp HQ398_RS05440 PF04717 Type VI secretion system, phage-baseplate injector HQ398_RS05460 PF02132 RecR protein HQ398_RS05460 PF13662 Toprim domain HQ398_RS05465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS05465 PF00183 Hsp90 protein HQ398_RS05470 PF00005 ABC transporter HQ398_RS05475 PF00005 ABC transporter HQ398_RS05475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS05480 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS05480 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_RS05490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS05500 PF04012 PspA/IM30 family HQ398_RS05505 PF06667 Phage shock protein B HQ398_RS05520 PF05128 Domain of unknown function (DUF697) HQ398_RS05525 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HQ398_RS05530 PF01329 Pterin 4 alpha carbinolamine dehydratase HQ398_RS05535 PF18024 Helix-turn-helix domain HQ398_RS05535 PF00158 Sigma-54 interaction domain HQ398_RS05545 PF17152 Periplasmic sensor domain HQ398_RS05545 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS05550 PF00691 OmpA family HQ398_RS05555 PF03741 Integral membrane protein TerC family HQ398_RS05565 PF08891 YfcL protein HQ398_RS05570 PF00501 AMP-binding enzyme HQ398_RS05575 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ398_RS05585 PF13460 NAD(P)H-binding HQ398_RS05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS05590 PF03466 LysR substrate binding domain HQ398_RS05595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS05595 PF03466 LysR substrate binding domain HQ398_RS05600 PF08267 Cobalamin-independent synthase, N-terminal domain HQ398_RS05600 PF01717 Cobalamin-independent synthase, Catalytic domain HQ398_RS05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS05615 PF03466 LysR substrate binding domain HQ398_RS05620 PF00232 Glycosyl hydrolase family 1 HQ398_RS05625 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ398_RS05625 PF18381 YcaO cyclodehydratase C-terminal domain HQ398_RS05630 PF01226 Formate/nitrite transporter HQ398_RS05635 PF01228 Glycine radical HQ398_RS05635 PF02901 Pyruvate formate lyase-like HQ398_RS05640 PF03692 Putative zinc- or iron-chelating domain HQ398_RS05655 PF00343 Carbohydrate phosphorylase HQ398_RS05660 PF00939 Sodium:sulfate symporter transmembrane region HQ398_RS05665 PF00085 Thioredoxin HQ398_RS05670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ398_RS05670 PF00072 Response regulator receiver domain HQ398_RS05670 PF01627 Hpt domain HQ398_RS05670 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS05670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS05670 PF00672 HAMP domain HQ398_RS05675 PF00664 ABC transporter transmembrane region HQ398_RS05675 PF00005 ABC transporter HQ398_RS05680 PF00664 ABC transporter transmembrane region HQ398_RS05680 PF00005 ABC transporter HQ398_RS05705 PF08543 Phosphomethylpyrimidine kinase HQ398_RS05715 PF01928 CYTH domain HQ398_RS05725 PF13673 Acetyltransferase (GNAT) domain HQ398_RS05735 PF00285 Citrate synthase, C-terminal domain HQ398_RS05745 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ398_RS05750 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ398_RS05755 PF02910 Fumarate reductase flavoprotein C-term HQ398_RS05755 PF00890 FAD binding domain HQ398_RS05760 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ398_RS05765 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ398_RS05765 PF02779 Transketolase, pyrimidine binding domain HQ398_RS05765 PF00676 Dehydrogenase E1 component HQ398_RS05765 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ398_RS05770 PF00364 Biotin-requiring enzyme HQ398_RS05770 PF02817 e3 binding domain HQ398_RS05770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ398_RS05775 PF08442 ATP-grasp domain HQ398_RS05775 PF00549 CoA-ligase HQ398_RS05780 PF00549 CoA-ligase HQ398_RS05780 PF02629 CoA binding domain HQ398_RS05790 PF01609 Transposase DDE domain HQ398_RS05795 PF07969 Amidohydrolase family HQ398_RS05805 PF01266 FAD dependent oxidoreductase HQ398_RS05810 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS05815 PF00005 ABC transporter HQ398_RS05830 PF07702 UTRA domain HQ398_RS05830 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS05835 PF00266 Aminotransferase class-V HQ398_RS05840 PF00202 Aminotransferase class-III HQ398_RS05850 PF03918 Cytochrome C biogenesis protein HQ398_RS05855 PF08534 Redoxin HQ398_RS05870 PF13247 4Fe-4S dicluster domain HQ398_RS05870 PF00037 4Fe-4S binding domain HQ398_RS05875 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ398_RS05875 PF13435 Cytochrome c554 and c-prime HQ398_RS05880 PF02335 Cytochrome c552 HQ398_RS05895 PF13183 4Fe-4S dicluster domain HQ398_RS05895 PF02754 Cysteine-rich domain HQ398_RS05900 PF00890 FAD binding domain HQ398_RS05905 PF01266 FAD dependent oxidoreductase HQ398_RS05905 PF04324 BFD-like [2Fe-2S] binding domain HQ398_RS05915 PF02810 SEC-C motif HQ398_RS05920 PF00672 HAMP domain HQ398_RS05920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS05920 PF17200 Single Cache domain 2 HQ398_RS05925 PF01047 MarR family HQ398_RS05925 PF00480 ROK family HQ398_RS05930 PF03942 DTW domain HQ398_RS05935 PF01925 Sulfite exporter TauE/SafE HQ398_RS05940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS05940 PF03466 LysR substrate binding domain HQ398_RS05950 PF14525 AraC-binding-like domain HQ398_RS05950 PF12833 Helix-turn-helix domain HQ398_RS05955 PF11398 Protein of unknown function (DUF2813) HQ398_RS05965 PF00128 Alpha amylase, catalytic domain HQ398_RS05965 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_RS06000 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_RS06000 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ398_RS06005 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS06010 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS06020 PF01207 Dihydrouridine synthase (Dus) HQ398_RS06025 PF04304 Protein of unknown function (DUF454) HQ398_RS06030 PF00156 Phosphoribosyl transferase domain HQ398_RS06035 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ398_RS06035 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ398_RS06035 PF12169 DNA polymerase III subunits gamma and tau domain III HQ398_RS06040 PF02575 YbaB/EbfC DNA-binding family HQ398_RS06050 PF01965 DJ-1/PfpI family HQ398_RS06055 PF01261 Xylose isomerase-like TIM barrel HQ398_RS06060 PF03466 LysR substrate binding domain HQ398_RS06060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS06070 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ398_RS06075 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ398_RS06095 PF00136 DNA polymerase family B HQ398_RS06095 PF03104 DNA polymerase family B, exonuclease domain HQ398_RS06110 PF01863 Protein of unknown function DUF45 HQ398_RS06125 PF03606 C4-dicarboxylate anaerobic carrier HQ398_RS06140 PF01266 FAD dependent oxidoreductase HQ398_RS06140 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ398_RS06145 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ398_RS06145 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ398_RS06175 PF09335 SNARE associated Golgi protein HQ398_RS06180 PF02600 Disulfide bond formation protein DsbB HQ398_RS06185 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ398_RS06190 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS06190 PF07840 FadR C-terminal domain HQ398_RS06200 PF07152 YaeQ protein HQ398_RS06210 PF00158 Sigma-54 interaction domain HQ398_RS06210 PF13188 PAS domain HQ398_RS06210 PF02954 Bacterial regulatory protein, Fis family HQ398_RS06240 PF01554 MatE HQ398_RS06245 PF06786 Uncharacterised protein family (UPF0253) HQ398_RS06255 PF00677 Lumazine binding domain HQ398_RS06270 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS06275 PF02222 ATP-grasp domain HQ398_RS06275 PF01370 NAD dependent epimerase/dehydratase family HQ398_RS06280 PF00892 EamA-like transporter family HQ398_RS06285 PF02525 Flavodoxin-like fold HQ398_RS06310 PF17783 CvfB-like winged helix domain HQ398_RS06310 PF13509 S1 domain HQ398_RS06320 PF04269 Protein of unknown function, DUF440 HQ398_RS06325 PF00912 Transglycosylase HQ398_RS06330 PF04269 Protein of unknown function, DUF440 HQ398_RS06335 PF03776 Septum formation topological specificity factor MinE HQ398_RS06340 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ398_RS06345 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ398_RS06345 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ398_RS06350 PF05166 YcgL domain HQ398_RS06355 PF01609 Transposase DDE domain HQ398_RS06365 PF08274 PhnA Zinc-Ribbon HQ398_RS06365 PF03831 PhnA domain HQ398_RS06375 PF08329 Chitinase A, N-terminal domain HQ398_RS06375 PF00704 Glycosyl hydrolases family 18 HQ398_RS06380 PF04828 Glutathione-dependent formaldehyde-activating enzyme HQ398_RS06385 PF00300 Histidine phosphatase superfamily (branch 1) HQ398_RS06390 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS06390 PF08448 PAS fold HQ398_RS06395 PF01713 Smr domain HQ398_RS06400 PF05175 Methyltransferase small domain HQ398_RS06405 PF01264 Chorismate synthase HQ398_RS06415 PF00270 DEAD/DEAH box helicase HQ398_RS06415 PF00271 Helicase conserved C-terminal domain HQ398_RS06420 PF01124 MAPEG family HQ398_RS06435 PF03222 Tryptophan/tyrosine permease family HQ398_RS06440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ398_RS06440 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS06445 PF00381 PTS HPr component phosphorylation site HQ398_RS06445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_RS06450 PF00294 pfkB family carbohydrate kinase HQ398_RS06455 PF02378 Phosphotransferase system, EIIC HQ398_RS06455 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_RS06460 PF06560 Glucose-6-phosphate isomerase (GPI) HQ398_RS06465 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ398_RS06465 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS06480 PF03610 PTS system fructose IIA component HQ398_RS06480 PF03830 PTS system sorbose subfamily IIB component HQ398_RS06490 PF03613 PTS system mannose/fructose/sorbose family IID component HQ398_RS06500 PF06945 Protein of unknown function (DUF1289) HQ398_RS06505 PF06725 3D domain HQ398_RS06505 PF03562 MltA specific insert domain HQ398_RS06510 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_RS06515 PF00268 Ribonucleotide reductase, small chain HQ398_RS06520 PF03477 ATP cone domain HQ398_RS06520 PF02867 Ribonucleotide reductase, barrel domain HQ398_RS06520 PF00317 Ribonucleotide reductase, all-alpha domain HQ398_RS06525 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS06535 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ398_RS06535 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ398_RS06540 PF00128 Alpha amylase, catalytic domain HQ398_RS06550 PF04055 Radical SAM superfamily HQ398_RS06560 PF03129 Anticodon binding domain HQ398_RS06560 PF02824 TGS domain HQ398_RS06560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ398_RS06560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ398_RS06565 PF00707 Translation initiation factor IF-3, C-terminal domain HQ398_RS06565 PF05198 Translation initiation factor IF-3, N-terminal domain HQ398_RS06570 PF01632 Ribosomal protein L35 HQ398_RS06575 PF00453 Ribosomal protein L20 HQ398_RS06580 PF01323 DSBA-like thioredoxin domain HQ398_RS06585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ398_RS06585 PF01409 tRNA synthetases class II core domain (F) HQ398_RS06590 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HQ398_RS06590 PF03484 tRNA synthetase B5 domain HQ398_RS06590 PF01588 Putative tRNA binding domain HQ398_RS06590 PF03483 B3/4 domain HQ398_RS06590 PF03147 Ferredoxin-fold anticodon binding domain HQ398_RS06595 PF00216 Bacterial DNA-binding protein HQ398_RS06600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS06600 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS06600 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ398_RS06600 PF00072 Response regulator receiver domain HQ398_RS06615 PF02146 Sir2 family HQ398_RS06620 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS06625 PF00294 pfkB family carbohydrate kinase HQ398_RS06630 PF13407 Periplasmic binding protein domain HQ398_RS06635 PF02653 Branched-chain amino acid transport system / permease component HQ398_RS06640 PF00005 ABC transporter HQ398_RS06645 PF05025 RbsD / FucU transport protein family HQ398_RS06650 PF00043 Glutathione S-transferase, C-terminal domain HQ398_RS06650 PF02798 Glutathione S-transferase, N-terminal domain HQ398_RS06655 PF13416 Bacterial extracellular solute-binding protein HQ398_RS06660 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS06665 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS06670 PF00005 ABC transporter HQ398_RS06670 PF08402 TOBE domain HQ398_RS06685 PF01171 PP-loop family HQ398_RS06690 PF00582 Universal stress protein family HQ398_RS06695 PF00027 Cyclic nucleotide-binding domain HQ398_RS06695 PF13545 Crp-like helix-turn-helix domain HQ398_RS06710 PF00403 Heavy-metal-associated domain HQ398_RS06720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ398_RS06720 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ398_RS06735 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ398_RS06745 PF13185 GAF domain HQ398_RS06750 PF04352 ProQ/FINO family HQ398_RS06750 PF17516 ProQ C-terminal domain HQ398_RS06755 PF03572 Peptidase family S41 HQ398_RS06755 PF00595 PDZ domain HQ398_RS06755 PF17804 Tail specific protease N-terminal domain HQ398_RS06755 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ398_RS06760 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ398_RS06760 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ398_RS06760 PF01433 Peptidase family M1 domain HQ398_RS06770 PF05088 Bacterial NAD-glutamate dehydrogenase HQ398_RS06775 PF01180 Dihydroorotate dehydrogenase HQ398_RS06780 PF07126 Cell-division protein ZapC HQ398_RS06795 PF00672 HAMP domain HQ398_RS06795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS06805 PF01339 CheB methylesterase HQ398_RS06805 PF00072 Response regulator receiver domain HQ398_RS06810 PF01739 CheR methyltransferase, SAM binding domain HQ398_RS06810 PF03705 CheR methyltransferase, all-alpha domain HQ398_RS06815 PF01584 CheW-like domain HQ398_RS06825 PF01584 CheW-like domain HQ398_RS06825 PF09078 CheY binding HQ398_RS06825 PF02895 Signal transducing histidine kinase, homodimeric domain HQ398_RS06825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS06825 PF01627 Hpt domain HQ398_RS06835 PF00072 Response regulator receiver domain HQ398_RS06835 PF01627 Hpt domain HQ398_RS06835 PF01584 CheW-like domain HQ398_RS06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS06840 PF01170 Putative RNA methylase family UPF0020 HQ398_RS06840 PF10672 S-adenosylmethionine-dependent methyltransferase HQ398_RS06840 PF02926 THUMP domain HQ398_RS06850 PF12848 ABC transporter HQ398_RS06850 PF00005 ABC transporter HQ398_RS06850 PF16326 ABC transporter C-terminal domain HQ398_RS06855 PF04957 Ribosome modulation factor HQ398_RS06860 PF07977 FabA-like domain HQ398_RS06865 PF13654 AAA domain HQ398_RS06865 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ398_RS06880 PF07130 YebG protein HQ398_RS06890 PF00106 short chain dehydrogenase HQ398_RS06905 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ398_RS06905 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS06915 PF06974 Protein of unknown function (DUF1298) HQ398_RS06915 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ398_RS06930 PF03972 MmgE/PrpD family HQ398_RS06935 PF00285 Citrate synthase, C-terminal domain HQ398_RS06950 PF04403 Paraquat-inducible protein A HQ398_RS06955 PF02470 MlaD protein HQ398_RS06960 PF01189 16S rRNA methyltransferase RsmB/F HQ398_RS06960 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HQ398_RS06960 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HQ398_RS06970 PF00589 Phage integrase family HQ398_RS06975 PF01026 TatD related DNase HQ398_RS06980 PF09115 DNA polymerase III, delta subunit, C terminal HQ398_RS06985 PF02223 Thymidylate kinase HQ398_RS06990 PF02618 YceG-like family HQ398_RS06995 PF01063 Amino-transferase class IV HQ398_RS07000 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ398_RS07000 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ398_RS07005 PF00550 Phosphopantetheine attachment site HQ398_RS07015 PF00698 Acyl transferase domain HQ398_RS07020 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ398_RS07020 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ398_RS07025 PF02504 Fatty acid synthesis protein HQ398_RS07030 PF01783 Ribosomal L32p protein family HQ398_RS07035 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ398_RS07040 PF02545 Maf-like protein HQ398_RS07045 PF01609 Transposase DDE domain HQ398_RS07050 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS07055 PF00849 RNA pseudouridylate synthase HQ398_RS07055 PF01479 S4 domain HQ398_RS07060 PF12111 Polyribonucleotide phosphorylase C terminal HQ398_RS07060 PF10150 Ribonuclease E/G family HQ398_RS07060 PF00575 S1 RNA binding domain HQ398_RS07070 PF01384 Phosphate transporter family HQ398_RS07075 PF00692 dUTPase HQ398_RS07080 PF00485 Phosphoribulokinase / Uridine kinase family HQ398_RS07085 PF10609 NUBPL iron-transfer P-loop NTPase HQ398_RS07090 PF01588 Putative tRNA binding domain HQ398_RS07090 PF08264 Anticodon-binding domain of tRNA HQ398_RS07090 PF09334 tRNA synthetases class I (M) HQ398_RS07100 PF00708 Acylphosphatase HQ398_RS07105 PF00672 HAMP domain HQ398_RS07105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS07110 PF17785 PUA-like domain HQ398_RS07110 PF10672 S-adenosylmethionine-dependent methyltransferase HQ398_RS07120 PF00586 AIR synthase related protein, N-terminal domain HQ398_RS07120 PF02769 AIR synthase related protein, C-terminal domain HQ398_RS07130 PF00753 Metallo-beta-lactamase superfamily HQ398_RS07135 PF01612 3'-5' exonuclease HQ398_RS07135 PF00570 HRDC domain HQ398_RS07140 PF00501 AMP-binding enzyme HQ398_RS07140 PF13193 AMP-binding enzyme C-terminal domain HQ398_RS07145 PF00561 alpha/beta hydrolase fold HQ398_RS07155 PF00814 Glycoprotease family HQ398_RS07160 PF13307 Helicase C-terminal domain HQ398_RS07160 PF04851 Type III restriction enzyme, res subunit HQ398_RS07170 PF01634 ATP phosphoribosyltransferase HQ398_RS07170 PF08029 HisG, C-terminal domain HQ398_RS07175 PF00815 Histidinol dehydrogenase HQ398_RS07180 PF00155 Aminotransferase class I and II HQ398_RS07185 PF08645 Polynucleotide kinase 3 phosphatase HQ398_RS07185 PF00475 Imidazoleglycerol-phosphate dehydratase HQ398_RS07190 PF00117 Glutamine amidotransferase class-I HQ398_RS07195 PF00977 Histidine biosynthesis protein HQ398_RS07200 PF00977 Histidine biosynthesis protein HQ398_RS07205 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ398_RS07205 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ398_RS07215 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS07215 PF08448 PAS fold HQ398_RS07225 PF03606 C4-dicarboxylate anaerobic carrier HQ398_RS07235 PF05433 Glycine zipper 2TM domain HQ398_RS07240 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_RS07240 PF01799 [2Fe-2S] binding domain HQ398_RS07245 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ398_RS07245 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ398_RS07250 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ398_RS07250 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ398_RS07260 PF00860 Permease family HQ398_RS07265 PF01979 Amidohydrolase family HQ398_RS07270 PF00860 Permease family HQ398_RS07275 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ398_RS07275 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ398_RS07275 PF01799 [2Fe-2S] binding domain HQ398_RS07280 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ398_RS07285 PF01979 Amidohydrolase family HQ398_RS07290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ398_RS07290 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS07300 PF12804 MobA-like NTP transferase domain HQ398_RS07310 PF13478 XdhC Rossmann domain HQ398_RS07310 PF02625 XdhC and CoxI family HQ398_RS07315 PF00892 EamA-like transporter family HQ398_RS07320 PF00696 Amino acid kinase family HQ398_RS07325 PF01979 Amidohydrolase family HQ398_RS07330 PF01546 Peptidase family M20/M25/M40 HQ398_RS07330 PF07687 Peptidase dimerisation domain HQ398_RS07335 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS07340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_RS07340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_RS07365 PF01327 Polypeptide deformylase HQ398_RS07375 PF03330 Lytic transglycolase HQ398_RS07380 PF16330 MukB hinge domain HQ398_RS07380 PF04310 MukB N-terminal HQ398_RS07385 PF04288 MukE-like family HQ398_RS07390 PF17192 MukF middle domain HQ398_RS07390 PF17193 MukF C-terminal domain HQ398_RS07390 PF03882 MukF winged-helix domain HQ398_RS07395 PF13847 Methyltransferase domain HQ398_RS07400 PF02698 DUF218 domain HQ398_RS07405 PF00121 Triosephosphate isomerase HQ398_RS07410 PF00365 Phosphofructokinase HQ398_RS07415 PF00375 Sodium:dicarboxylate symporter family HQ398_RS07420 PF06865 Pyrimidine/purine nucleoside phosphorylase HQ398_RS07425 PF03313 Serine dehydratase alpha chain HQ398_RS07425 PF03315 Serine dehydratase beta chain HQ398_RS07430 PF03315 Serine dehydratase beta chain HQ398_RS07430 PF03313 Serine dehydratase alpha chain HQ398_RS07440 PF04715 Anthranilate synthase component I, N terminal region HQ398_RS07440 PF00425 chorismate binding enzyme HQ398_RS07445 PF00293 NUDIX domain HQ398_RS07450 PF03222 Tryptophan/tyrosine permease family HQ398_RS07455 PF00375 Sodium:dicarboxylate symporter family HQ398_RS07460 PF00270 DEAD/DEAH box helicase HQ398_RS07460 PF00271 Helicase conserved C-terminal domain HQ398_RS07460 PF00570 HRDC domain HQ398_RS07460 PF16124 RecQ zinc-binding HQ398_RS07460 PF09382 RQC domain HQ398_RS07465 PF08298 PrkA AAA domain HQ398_RS07465 PF06798 PrkA serine protein kinase C-terminal domain HQ398_RS07470 PF04285 Protein of unknown function (DUF444) HQ398_RS07475 PF04293 SpoVR like protein HQ398_RS07480 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ398_RS07480 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS07480 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ398_RS07485 PF00108 Thiolase, N-terminal domain HQ398_RS07485 PF02803 Thiolase, C-terminal domain HQ398_RS07490 PF07726 ATPase family associated with various cellular activities (AAA) HQ398_RS07490 PF17863 AAA lid domain HQ398_RS07510 PF13519 von Willebrand factor type A domain HQ398_RS07520 PF04542 Sigma-70 region 2 HQ398_RS07520 PF08281 Sigma-70, region 4 HQ398_RS07530 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ398_RS07535 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ398_RS07540 PF00563 EAL domain HQ398_RS07540 PF08668 HDOD domain HQ398_RS07545 PF00108 Thiolase, N-terminal domain HQ398_RS07545 PF02803 Thiolase, C-terminal domain HQ398_RS07550 PF00376 MerR family regulatory protein HQ398_RS07550 PF09278 MerR, DNA binding HQ398_RS07555 PF01386 Ribosomal L25p family HQ398_RS07565 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HQ398_RS07565 PF00271 Helicase conserved C-terminal domain HQ398_RS07565 PF04408 Helicase associated domain (HA2) HQ398_RS07565 PF11898 Domain of unknown function (DUF3418) HQ398_RS07565 PF00270 DEAD/DEAH box helicase HQ398_RS07570 PF01743 Poly A polymerase head domain HQ398_RS07570 PF02272 DHHA1 domain HQ398_RS07570 PF01368 DHH family HQ398_RS07570 PF00571 CBS domain HQ398_RS07575 PF01966 HD domain HQ398_RS07580 PF00929 Exonuclease HQ398_RS07580 PF08411 Exonuclease C-terminal HQ398_RS07595 PF03788 LrgA family HQ398_RS07600 PF04172 LrgB-like family HQ398_RS07605 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ398_RS07605 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ398_RS07610 PF01212 Beta-eliminating lyase HQ398_RS07620 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HQ398_RS07630 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ398_RS07630 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ398_RS07635 PF02634 FdhD/NarQ family HQ398_RS07640 PF02954 Bacterial regulatory protein, Fis family HQ398_RS07640 PF01590 GAF domain HQ398_RS07640 PF00158 Sigma-54 interaction domain HQ398_RS07655 PF13247 4Fe-4S dicluster domain HQ398_RS07655 PF12800 4Fe-4S binding domain HQ398_RS07660 PF01609 Transposase DDE domain HQ398_RS07675 PF00583 Acetyltransferase (GNAT) family HQ398_RS07680 PF02705 K+ potassium transporter HQ398_RS07685 PF12798 4Fe-4S binding domain HQ398_RS07685 PF00037 4Fe-4S binding domain HQ398_RS07690 PF00361 Proton-conducting membrane transporter HQ398_RS07695 PF00146 NADH dehydrogenase HQ398_RS07700 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ398_RS07700 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ398_RS07700 PF00374 Nickel-dependent hydrogenase HQ398_RS07705 PF12838 4Fe-4S dicluster domain HQ398_RS07710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ398_RS07715 PF07450 Formate hydrogenlyase maturation protein HycH HQ398_RS07720 PF01750 Hydrogenase maturation protease HQ398_RS07730 PF12390 Selenocysteine synthase N terminal HQ398_RS07730 PF03841 L-seryl-tRNA selenium transferase HQ398_RS07735 PF09105 Elongation factor SelB, winged helix HQ398_RS07735 PF03144 Elongation factor Tu domain 2 HQ398_RS07735 PF09106 Elongation factor SelB, winged helix HQ398_RS07735 PF09107 Elongation factor SelB, winged helix HQ398_RS07735 PF00009 Elongation factor Tu GTP binding domain HQ398_RS07740 PF00708 Acylphosphatase HQ398_RS07740 PF17788 HypF Kae1-like domain HQ398_RS07740 PF01300 Telomere recombination HQ398_RS07740 PF07503 HypF finger HQ398_RS07745 PF01455 HupF/HypC family HQ398_RS07750 PF01924 Hydrogenase formation hypA family HQ398_RS07760 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HQ398_RS07765 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ398_RS07770 PF08402 TOBE domain HQ398_RS07770 PF00005 ABC transporter HQ398_RS07775 PF00005 ABC transporter HQ398_RS07780 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS07780 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_RS07790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS07795 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HQ398_RS07800 PF01750 Hydrogenase maturation protease HQ398_RS07805 PF00374 Nickel-dependent hydrogenase HQ398_RS07810 PF03916 Polysulphide reductase, NrfD HQ398_RS07815 PF13247 4Fe-4S dicluster domain HQ398_RS07820 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HQ398_RS07820 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ398_RS07855 PF02796 Helix-turn-helix domain of resolvase HQ398_RS07855 PF00239 Resolvase, N terminal domain HQ398_RS07870 PF04002 RadC-like JAB domain HQ398_RS07905 PF01609 Transposase DDE domain HQ398_RS07910 PF01420 Type I restriction modification DNA specificity domain HQ398_RS07915 PF02384 N-6 DNA Methylase HQ398_RS07935 PF01925 Sulfite exporter TauE/SafE HQ398_RS07940 PF13520 Amino acid permease HQ398_RS07950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ398_RS07950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ398_RS07955 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS07960 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS07965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_RS07965 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_RS07965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_RS07970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_RS07970 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_RS07970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_RS07975 PF01039 Carboxyl transferase domain HQ398_RS07980 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS07990 PF00682 HMGL-like HQ398_RS07995 PF00376 MerR family regulatory protein HQ398_RS07995 PF09278 MerR, DNA binding HQ398_RS08010 PF01184 GPR1/FUN34/yaaH family HQ398_RS08015 PF06167 Glucose-regulated metallo-peptidase M90 HQ398_RS08020 PF00583 Acetyltransferase (GNAT) family HQ398_RS08025 PF01235 Sodium:alanine symporter family HQ398_RS08030 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS08045 PF04341 Protein of unknown function, DUF485 HQ398_RS08050 PF00474 Sodium:solute symporter family HQ398_RS08055 PF00005 ABC transporter HQ398_RS08055 PF12848 ABC transporter HQ398_RS08060 PF13145 PPIC-type PPIASE domain HQ398_RS08065 PF00216 Bacterial DNA-binding protein HQ398_RS08070 PF02190 ATP-dependent protease La (LON) substrate-binding domain HQ398_RS08070 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_RS08070 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ398_RS08075 PF07724 AAA domain (Cdc48 subfamily) HQ398_RS08075 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_RS08075 PF06689 ClpX C4-type zinc finger HQ398_RS08080 PF00574 Clp protease HQ398_RS08085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_RS08085 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ398_RS08085 PF05697 Bacterial trigger factor protein (TF) HQ398_RS08100 PF12704 MacB-like periplasmic core domain HQ398_RS08100 PF02687 FtsX-like permease family HQ398_RS08105 PF00005 ABC transporter HQ398_RS08110 PF02687 FtsX-like permease family HQ398_RS08110 PF12704 MacB-like periplasmic core domain HQ398_RS08120 PF02559 CarD-like/TRCF domain HQ398_RS08120 PF00270 DEAD/DEAH box helicase HQ398_RS08120 PF00271 Helicase conserved C-terminal domain HQ398_RS08120 PF03461 TRCF domain HQ398_RS08120 PF17757 UvrB interaction domain HQ398_RS08125 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ398_RS08130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS08135 PF00892 EamA-like transporter family HQ398_RS08145 PF00300 Histidine phosphatase superfamily (branch 1) HQ398_RS08150 PF00675 Insulinase (Peptidase family M16) HQ398_RS08150 PF05193 Peptidase M16 inactive domain HQ398_RS08155 PF05724 Thiopurine S-methyltransferase (TPMT) HQ398_RS08175 PF01609 Transposase DDE domain HQ398_RS08185 PF00958 GMP synthase C terminal domain HQ398_RS08185 PF00117 Glutamine amidotransferase class-I HQ398_RS08185 PF02540 NAD synthase HQ398_RS08190 PF00478 IMP dehydrogenase / GMP reductase domain HQ398_RS08190 PF00571 CBS domain HQ398_RS08200 PF02705 K+ potassium transporter HQ398_RS08210 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS08215 PF02472 Biopolymer transport protein ExbD/TolR HQ398_RS08220 PF02601 Exonuclease VII, large subunit HQ398_RS08220 PF13742 OB-fold nucleic acid binding domain HQ398_RS08225 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS08225 PF07702 UTRA domain HQ398_RS08230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_RS08230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_RS08230 PF02378 Phosphotransferase system, EIIC HQ398_RS08235 PF01074 Glycosyl hydrolases family 38 N-terminal domain HQ398_RS08235 PF09261 Alpha mannosidase middle domain HQ398_RS08235 PF07748 Glycosyl hydrolases family 38 C-terminal domain HQ398_RS08240 PF01820 D-ala D-ala ligase N-terminus HQ398_RS08240 PF07478 D-ala D-ala ligase C-terminus HQ398_RS08250 PF00255 Glutathione peroxidase HQ398_RS08255 PF00270 DEAD/DEAH box helicase HQ398_RS08255 PF00271 Helicase conserved C-terminal domain HQ398_RS08260 PF04055 Radical SAM superfamily HQ398_RS08265 PF00672 HAMP domain HQ398_RS08265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS08270 PF00793 DAHP synthetase I family HQ398_RS08275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ398_RS08280 PF00266 Aminotransferase class-V HQ398_RS08290 PF01012 Electron transfer flavoprotein domain HQ398_RS08300 PF01544 CorA-like Mg2+ transporter protein HQ398_RS08305 PF11143 Protein of unknown function (DUF2919) HQ398_RS08315 PF07273 Protein of unknown function (DUF1439) HQ398_RS08325 PF00483 Nucleotidyl transferase HQ398_RS08345 PF00294 pfkB family carbohydrate kinase HQ398_RS08355 PF00762 Ferrochelatase HQ398_RS08360 PF05191 Adenylate kinase, active site lid HQ398_RS08365 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ398_RS08370 PF00156 Phosphoribosyl transferase domain HQ398_RS08375 PF02674 Colicin V production protein HQ398_RS08380 PF02403 Seryl-tRNA synthetase N-terminal domain HQ398_RS08380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ398_RS08390 PF03548 Outer membrane lipoprotein carrier protein LolA HQ398_RS08395 PF17854 FtsK alpha domain HQ398_RS08395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ398_RS08395 PF01580 FtsK/SpoIIIE family HQ398_RS08395 PF09397 Ftsk gamma domain HQ398_RS08400 PF01037 Lrp/AsnC ligand binding domain HQ398_RS08410 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS08415 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS08420 PF05433 Glycine zipper 2TM domain HQ398_RS08425 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ398_RS08430 PF04376 Arginine-tRNA-protein transferase, N terminus HQ398_RS08430 PF04377 Arginine-tRNA-protein transferase, C terminus HQ398_RS08435 PF01176 Translation initiation factor 1A / IF-1 HQ398_RS08440 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_RS08440 PF07724 AAA domain (Cdc48 subfamily) HQ398_RS08440 PF17871 AAA lid domain HQ398_RS08440 PF02861 Clp amino terminal domain, pathogenicity island component HQ398_RS08440 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_RS08445 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ398_RS08450 PF00313 'Cold-shock' DNA-binding domain HQ398_RS08455 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HQ398_RS08455 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HQ398_RS08475 PF00072 Response regulator receiver domain HQ398_RS08475 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS08480 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS08480 PF00672 HAMP domain HQ398_RS08490 PF09924 Uncharacterised conserved protein (DUF2156) HQ398_RS08490 PF03706 Lysylphosphatidylglycerol synthase TM region HQ398_RS08500 PF01219 Prokaryotic diacylglycerol kinase HQ398_RS08505 PF00884 Sulfatase HQ398_RS08505 PF08019 Phosphoethanolamine transferase EptA/EptB HQ398_RS08520 PF10722 Putative bacterial sensory transduction regulator HQ398_RS08530 PF00265 Thymidine kinase HQ398_RS08535 PF03553 Na+/H+ antiporter family HQ398_RS08540 PF00816 H-NS histone family HQ398_RS08545 PF01923 Cobalamin adenosyltransferase HQ398_RS08550 PF12843 Putative quorum-sensing-regulated virulence factor HQ398_RS08555 PF04055 Radical SAM superfamily HQ398_RS08560 PF06508 Queuosine biosynthesis protein QueC HQ398_RS08575 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ398_RS08580 PF18073 Rubredoxin metal binding domain HQ398_RS08590 PF00216 Bacterial DNA-binding protein HQ398_RS08595 PF00575 S1 RNA binding domain HQ398_RS08600 PF02224 Cytidylate kinase HQ398_RS08605 PF00925 GTP cyclohydrolase II HQ398_RS08610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS08610 PF03466 LysR substrate binding domain HQ398_RS08615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS08615 PF03466 LysR substrate binding domain HQ398_RS08620 PF07690 Major Facilitator Superfamily HQ398_RS08635 PF00881 Nitroreductase family HQ398_RS08640 PF03806 AbgT putative transporter family HQ398_RS08645 PF00563 EAL domain HQ398_RS08645 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS08645 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS08645 PF13188 PAS domain HQ398_RS08650 PF03466 LysR substrate binding domain HQ398_RS08650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS08655 PF00072 Response regulator receiver domain HQ398_RS08665 PF01212 Beta-eliminating lyase HQ398_RS08670 PF00106 short chain dehydrogenase HQ398_RS08680 PF00248 Aldo/keto reductase family HQ398_RS08685 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ398_RS08695 PF00005 ABC transporter HQ398_RS08700 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS08705 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS08710 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS08715 PF03411 Penicillin-insensitive murein endopeptidase HQ398_RS08725 PF04536 TPM domain HQ398_RS08740 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS08745 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_RS08745 PF00691 OmpA family HQ398_RS08750 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ398_RS08755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ398_RS08760 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ398_RS08760 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ398_RS08770 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ398_RS08770 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ398_RS08775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_RS08775 PF00384 Molybdopterin oxidoreductase HQ398_RS08775 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_RS08780 PF00146 NADH dehydrogenase HQ398_RS08785 PF12838 4Fe-4S dicluster domain HQ398_RS08790 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ398_RS08795 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ398_RS08800 PF00361 Proton-conducting membrane transporter HQ398_RS08800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HQ398_RS08805 PF00361 Proton-conducting membrane transporter HQ398_RS08810 PF00361 Proton-conducting membrane transporter HQ398_RS08815 PF02769 AIR synthase related protein, C-terminal domain HQ398_RS08815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ398_RS08815 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ398_RS08820 PF01464 Transglycosylase SLT domain HQ398_RS08820 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS08825 PF07191 zinc-ribbons HQ398_RS08830 PF01926 50S ribosome-binding GTPase HQ398_RS08830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ398_RS08835 PF13360 PQQ-like domain HQ398_RS08840 PF09976 Tetratricopeptide repeat-like domain HQ398_RS08845 PF03129 Anticodon binding domain HQ398_RS08845 PF13393 Histidyl-tRNA synthetase HQ398_RS08850 PF04551 GcpE protein HQ398_RS08855 PF13464 Domain of unknown function (DUF4115) HQ398_RS08865 PF04055 Radical SAM superfamily HQ398_RS08870 PF00334 Nucleoside diphosphate kinase HQ398_RS08875 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_RS08875 PF12404 Peptidase HQ398_RS08880 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_RS08880 PF12404 Peptidase HQ398_RS08885 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_RS08890 PF00012 Hsp70 protein HQ398_RS08895 PF07743 HSCB C-terminal oligomerisation domain HQ398_RS08900 PF01521 Iron-sulphur cluster biosynthesis HQ398_RS08905 PF01592 NifU-like N terminal domain HQ398_RS08910 PF00266 Aminotransferase class-V HQ398_RS08915 PF02082 Transcriptional regulator HQ398_RS08920 PF00588 SpoU rRNA Methylase family HQ398_RS08930 PF02036 SCP-2 sterol transfer family HQ398_RS08935 PF01136 Peptidase family U32 HQ398_RS08940 PF01136 Peptidase family U32 HQ398_RS08945 PF07719 Tetratricopeptide repeat HQ398_RS08945 PF13181 Tetratricopeptide repeat HQ398_RS08955 PF07549 SecD/SecF GG Motif HQ398_RS08955 PF02355 Protein export membrane protein HQ398_RS08960 PF13721 SecD export protein N-terminal TM region HQ398_RS08960 PF07549 SecD/SecF GG Motif HQ398_RS08960 PF02355 Protein export membrane protein HQ398_RS08965 PF02699 Preprotein translocase subunit HQ398_RS08970 PF01702 Queuine tRNA-ribosyltransferase HQ398_RS08975 PF02547 Queuosine biosynthesis protein HQ398_RS08980 PF00005 ABC transporter HQ398_RS08980 PF00571 CBS domain HQ398_RS08985 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ398_RS08985 PF00578 AhpC/TSA family HQ398_RS08990 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS08990 PF13192 Thioredoxin domain HQ398_RS09035 PF04055 Radical SAM superfamily HQ398_RS09035 PF16199 Radical_SAM C-terminal domain HQ398_RS09045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ398_RS09045 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS09050 PF00005 ABC transporter HQ398_RS09055 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS09060 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS09075 PF00270 DEAD/DEAH box helicase HQ398_RS09075 PF00271 Helicase conserved C-terminal domain HQ398_RS09090 PF07670 Nucleoside recognition HQ398_RS09090 PF02421 Ferrous iron transport protein B HQ398_RS09090 PF07664 Ferrous iron transport protein B C terminus HQ398_RS09090 PF17910 FeoB cytosolic helical domain HQ398_RS09105 PF01169 Uncharacterized protein family UPF0016 HQ398_RS09135 PF01979 Amidohydrolase family HQ398_RS09155 PF09190 DALR domain HQ398_RS09155 PF01406 tRNA synthetases class I (C) catalytic domain HQ398_RS09160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ398_RS09170 PF00149 Calcineurin-like phosphoesterase HQ398_RS09175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS09175 PF00672 HAMP domain HQ398_RS09180 PF04226 Transglycosylase associated protein HQ398_RS09185 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS09185 PF08521 Two-component sensor kinase N-terminal HQ398_RS09225 PF04717 Type VI secretion system, phage-baseplate injector HQ398_RS09235 PF05638 Type VI secretion system effector, Hcp HQ398_RS09265 PF00936 BMC domain HQ398_RS09270 PF00936 BMC domain HQ398_RS09275 PF00936 BMC domain HQ398_RS09280 PF00171 Aldehyde dehydrogenase family HQ398_RS09280 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS09290 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS09295 PF01228 Glycine radical HQ398_RS09295 PF02901 Pyruvate formate lyase-like HQ398_RS09300 PF04055 Radical SAM superfamily HQ398_RS09300 PF13187 4Fe-4S dicluster domain HQ398_RS09305 PF00936 BMC domain HQ398_RS09310 PF06130 Phosphate propanoyltransferase HQ398_RS09320 PF00893 Small Multidrug Resistance protein HQ398_RS09325 PF00893 Small Multidrug Resistance protein HQ398_RS09350 PF01066 CDP-alcohol phosphatidyltransferase HQ398_RS09355 PF02151 UvrB/uvrC motif HQ398_RS09355 PF01541 GIY-YIG catalytic domain HQ398_RS09355 PF08459 UvrC Helix-hairpin-helix N-terminal HQ398_RS09360 PF00072 Response regulator receiver domain HQ398_RS09360 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS09365 PF02348 Cytidylyltransferase HQ398_RS09370 PF03966 Trm112p-like protein HQ398_RS09375 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ398_RS09380 PF00005 ABC transporter HQ398_RS09380 PF00664 ABC transporter transmembrane region HQ398_RS09400 PF00155 Aminotransferase class I and II HQ398_RS09410 PF03466 LysR substrate binding domain HQ398_RS09410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS09415 PF04219 Protein of unknown function, DUF HQ398_RS09420 PF03974 Ecotin HQ398_RS09425 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ398_RS09430 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HQ398_RS09430 PF01266 FAD dependent oxidoreductase HQ398_RS09435 PF08220 DeoR-like helix-turn-helix domain HQ398_RS09435 PF00455 DeoR C terminal sensor domain HQ398_RS09440 PF07690 Major Facilitator Superfamily HQ398_RS09445 PF00230 Major intrinsic protein HQ398_RS09450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ398_RS09450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ398_RS09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS09455 PF00672 HAMP domain HQ398_RS09455 PF02743 Cache domain HQ398_RS09465 PF03466 LysR substrate binding domain HQ398_RS09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS09490 PF00248 Aldo/keto reductase family HQ398_RS09495 PF07690 Major Facilitator Superfamily HQ398_RS09500 PF02525 Flavodoxin-like fold HQ398_RS09515 PF05114 Protein of unknown function (DUF692) HQ398_RS09535 PF02322 Cytochrome bd terminal oxidase subunit II HQ398_RS09540 PF01654 Cytochrome bd terminal oxidase subunit I HQ398_RS09545 PF00155 Aminotransferase class I and II HQ398_RS09545 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS09555 PF03061 Thioesterase superfamily HQ398_RS09560 PF10689 Protein of unknown function (DUF2496) HQ398_RS09565 PF03466 LysR substrate binding domain HQ398_RS09565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS09575 PF07690 Major Facilitator Superfamily HQ398_RS09580 PF01479 S4 domain HQ398_RS09580 PF00849 RNA pseudouridylate synthase HQ398_RS09585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_RS09595 PF01844 HNH endonuclease HQ398_RS09600 PF02508 Rnf-Nqr subunit, membrane protein HQ398_RS09605 PF04060 Putative Fe-S cluster HQ398_RS09610 PF10531 SLBB domain HQ398_RS09610 PF13375 RnfC Barrel sandwich hybrid domain HQ398_RS09610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ398_RS09610 PF12838 4Fe-4S dicluster domain HQ398_RS09615 PF03116 NQR2, RnfD, RnfE family HQ398_RS09620 PF04205 FMN-binding domain HQ398_RS09625 PF02508 Rnf-Nqr subunit, membrane protein HQ398_RS09630 PF00633 Helix-hairpin-helix motif HQ398_RS09630 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ398_RS09630 PF10576 Iron-sulfur binding domain of endonuclease III HQ398_RS09635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_RS09640 PF18393 MotY N-terminal domain HQ398_RS09640 PF00691 OmpA family HQ398_RS09650 PF00141 Peroxidase HQ398_RS09660 PF07759 Protein of unknown function (DUF1615) HQ398_RS09670 PF02142 MGS-like domain HQ398_RS09670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ398_RS09670 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HQ398_RS09675 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ398_RS09675 PF00117 Glutamine amidotransferase class-I HQ398_RS09680 PF05173 Dihydrodipicolinate reductase, C-terminus HQ398_RS09680 PF01113 Dihydrodipicolinate reductase, N-terminus HQ398_RS09690 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ398_RS09695 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ398_RS09700 PF01842 ACT domain HQ398_RS09700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_RS09700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_RS09705 PF01219 Prokaryotic diacylglycerol kinase HQ398_RS09710 PF00793 DAHP synthetase I family HQ398_RS09715 PF00005 ABC transporter HQ398_RS09720 PF01032 FecCD transport family HQ398_RS09735 PF00437 Type II/IV secretion system protein HQ398_RS09745 PF01168 Alanine racemase, N-terminal domain HQ398_RS09745 PF00842 Alanine racemase, C-terminal domain HQ398_RS09750 PF03741 Integral membrane protein TerC family HQ398_RS09755 PF00005 ABC transporter HQ398_RS09755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS09760 PF00005 ABC transporter HQ398_RS09760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS09775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS09780 PF01914 MarC family integral membrane protein HQ398_RS09785 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS09785 PF00171 Aldehyde dehydrogenase family HQ398_RS09790 PF00892 EamA-like transporter family HQ398_RS09795 PF01609 Transposase DDE domain HQ398_RS09800 PF08019 Phosphoethanolamine transferase EptA/EptB HQ398_RS09800 PF00884 Sulfatase HQ398_RS09805 PF01709 Transcriptional regulator HQ398_RS09810 PF02938 GAD domain HQ398_RS09810 PF01336 OB-fold nucleic acid binding domain HQ398_RS09810 PF00152 tRNA synthetases class II (D, K and N) HQ398_RS09820 PF01904 Protein of unknown function DUF72 HQ398_RS09825 PF13649 Methyltransferase domain HQ398_RS09830 PF08003 Protein of unknown function (DUF1698) HQ398_RS09850 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ398_RS09850 PF00578 AhpC/TSA family HQ398_RS09855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS09855 PF03466 LysR substrate binding domain HQ398_RS09860 PF00877 NlpC/P60 family HQ398_RS09870 PF03466 LysR substrate binding domain HQ398_RS09870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS09875 PF02447 GntP family permease HQ398_RS09880 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS09885 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ398_RS09890 PF12833 Helix-turn-helix domain HQ398_RS09895 PF01238 Phosphomannose isomerase type I HQ398_RS09930 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ398_RS09935 PF00005 ABC transporter HQ398_RS09945 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HQ398_RS09950 PF05656 Protein of unknown function (DUF805) HQ398_RS09955 PF07690 Major Facilitator Superfamily HQ398_RS09960 PF01040 UbiA prenyltransferase family HQ398_RS09965 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ398_RS09970 PF00510 Cytochrome c oxidase subunit III HQ398_RS09980 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ398_RS09980 PF06481 COX Aromatic Rich Motif HQ398_RS09990 PF00034 Cytochrome c HQ398_RS09990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ398_RS10000 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ398_RS10010 PF00171 Aldehyde dehydrogenase family HQ398_RS10015 PF08359 YsiA-like protein, C-terminal region HQ398_RS10015 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS10025 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS10040 PF01740 STAS domain HQ398_RS10040 PF00916 Sulfate permease family HQ398_RS10045 PF01554 MatE HQ398_RS10060 PF04325 Protein of unknown function (DUF465) HQ398_RS10065 PF04337 Protein of unknown function, DUF480 HQ398_RS10075 PF00127 Copper binding proteins, plastocyanin/azurin family HQ398_RS10080 PF02424 ApbE family HQ398_RS10095 PF03372 Endonuclease/Exonuclease/phosphatase family HQ398_RS10115 PF00005 ABC transporter HQ398_RS10120 PF00005 ABC transporter HQ398_RS10125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS10130 PF00873 AcrB/AcrD/AcrF family HQ398_RS10140 PF00529 HlyD membrane-fusion protein of T1SS HQ398_RS10140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS10145 PF00873 AcrB/AcrD/AcrF family HQ398_RS10155 PF01497 Periplasmic binding protein HQ398_RS10160 PF00005 ABC transporter HQ398_RS10165 PF01032 FecCD transport family HQ398_RS10170 PF01032 FecCD transport family HQ398_RS10175 PF08021 Siderophore-interacting FAD-binding domain HQ398_RS10175 PF04954 Siderophore-interacting protein HQ398_RS10180 PF11849 Domain of unknown function (DUF3369) HQ398_RS10190 PF00929 Exonuclease HQ398_RS10195 PF00075 RNase H HQ398_RS10200 PF08241 Methyltransferase domain HQ398_RS10205 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ398_RS10205 PF00753 Metallo-beta-lactamase superfamily HQ398_RS10210 PF01476 LysM domain HQ398_RS10210 PF01464 Transglycosylase SLT domain HQ398_RS10215 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HQ398_RS10230 PF04434 SWIM zinc finger HQ398_RS10230 PF00176 SNF2 family N-terminal domain HQ398_RS10230 PF00271 Helicase conserved C-terminal domain HQ398_RS10240 PF01476 LysM domain HQ398_RS10240 PF17969 L,D-transpeptidase C-terminal domain HQ398_RS10240 PF03734 L,D-transpeptidase catalytic domain HQ398_RS10250 PF00939 Sodium:sulfate symporter transmembrane region HQ398_RS10255 PF01575 MaoC like domain HQ398_RS10260 PF05971 RNA methyltransferase HQ398_RS10265 PF00877 NlpC/P60 family HQ398_RS10270 PF01648 4'-phosphopantetheinyl transferase superfamily HQ398_RS10275 PF00085 Thioredoxin HQ398_RS10285 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ398_RS10290 PF01842 ACT domain HQ398_RS10290 PF00551 Formyl transferase HQ398_RS10300 PF13091 PLD-like domain HQ398_RS10300 PF13396 Phospholipase_D-nuclease N-terminal HQ398_RS10315 PF01551 Peptidase family M23 HQ398_RS10315 PF10145 Phage-related minor tail protein HQ398_RS10315 PF01464 Transglycosylase SLT domain HQ398_RS10320 PF00230 Major intrinsic protein HQ398_RS10330 PF00155 Aminotransferase class I and II HQ398_RS10335 PF03606 C4-dicarboxylate anaerobic carrier HQ398_RS10340 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ398_RS10340 PF07055 Enoyl reductase FAD binding domain HQ398_RS10340 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ398_RS10345 PF13407 Periplasmic binding protein domain HQ398_RS10355 PF00300 Histidine phosphatase superfamily (branch 1) HQ398_RS10360 PF13309 HTH domain HQ398_RS10360 PF08348 YheO-like PAS domain HQ398_RS10365 PF03313 Serine dehydratase alpha chain HQ398_RS10370 PF01042 Endoribonuclease L-PSP HQ398_RS10380 PF12729 Four helix bundle sensory module for signal transduction HQ398_RS10380 PF00672 HAMP domain HQ398_RS10380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS10395 PF17810 Arginine decarboxylase helical bundle domain HQ398_RS10395 PF17944 Arginine decarboxylase C-terminal helical extension HQ398_RS10395 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ398_RS10400 PF01546 Peptidase family M20/M25/M40 HQ398_RS10400 PF07687 Peptidase dimerisation domain HQ398_RS10425 PF04264 YceI-like domain HQ398_RS10430 PF03466 LysR substrate binding domain HQ398_RS10430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS10445 PF00672 HAMP domain HQ398_RS10445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS10445 PF17200 Single Cache domain 2 HQ398_RS10450 PF01227 GTP cyclohydrolase I HQ398_RS10455 PF03453 MoeA N-terminal region (domain I and II) HQ398_RS10455 PF03454 MoeA C-terminal region (domain IV) HQ398_RS10455 PF00994 Probable molybdopterin binding domain HQ398_RS10460 PF00899 ThiF family HQ398_RS10470 PF06406 StbA protein HQ398_RS10475 PF00561 alpha/beta hydrolase fold HQ398_RS10480 PF03459 TOBE domain HQ398_RS10480 PF00005 ABC transporter HQ398_RS10485 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS10495 PF02391 MoaE protein HQ398_RS10500 PF02597 ThiS family HQ398_RS10505 PF01967 MoaC family HQ398_RS10515 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ398_RS10520 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HQ398_RS10525 PF12801 4Fe-4S binding domain HQ398_RS10525 PF12837 4Fe-4S binding domain HQ398_RS10530 PF12838 4Fe-4S dicluster domain HQ398_RS10530 PF12800 4Fe-4S binding domain HQ398_RS10535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_RS10535 PF00384 Molybdopterin oxidoreductase HQ398_RS10535 PF01568 Molydopterin dinucleotide binding domain HQ398_RS10535 PF10518 TAT (twin-arginine translocation) pathway signal sequence HQ398_RS10545 PF00037 4Fe-4S binding domain HQ398_RS10545 PF12800 4Fe-4S binding domain HQ398_RS10545 PF13187 4Fe-4S dicluster domain HQ398_RS10550 PF06463 Molybdenum Cofactor Synthesis C HQ398_RS10550 PF04055 Radical SAM superfamily HQ398_RS10555 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HQ398_RS10555 PF07730 Histidine kinase HQ398_RS10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS10555 PF00672 HAMP domain HQ398_RS10560 PF00072 Response regulator receiver domain HQ398_RS10560 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS10570 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ398_RS10570 PF00672 HAMP domain HQ398_RS10570 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS10570 PF01627 Hpt domain HQ398_RS10570 PF00072 Response regulator receiver domain HQ398_RS10570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS10580 PF01933 Uncharacterised protein family UPF0052 HQ398_RS10590 PF13230 Glutamine amidotransferases class-II HQ398_RS10595 PF13580 SIS domain HQ398_RS10600 PF09317 Domain of unknown function (DUF1974) HQ398_RS10600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_RS10600 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_RS10600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_RS10605 PF01546 Peptidase family M20/M25/M40 HQ398_RS10605 PF07687 Peptidase dimerisation domain HQ398_RS10610 PF03658 RnfH family Ubiquitin HQ398_RS10615 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ398_RS10620 PF01668 SmpB protein HQ398_RS10630 PF00589 Phage integrase family HQ398_RS10630 PF13356 Arm DNA-binding domain HQ398_RS10645 PF05930 Prophage CP4-57 regulatory protein (AlpA) HQ398_RS10655 PF09588 YqaJ-like viral recombinase domain HQ398_RS10700 PF04002 RadC-like JAB domain HQ398_RS10720 PF01609 Transposase DDE domain HQ398_RS10790 PF00717 Peptidase S24-like HQ398_RS10795 PF11798 IMS family HHH motif HQ398_RS10795 PF11799 impB/mucB/samB family C-terminal domain HQ398_RS10795 PF00817 impB/mucB/samB family HQ398_RS10795 PF13438 Domain of unknown function (DUF4113) HQ398_RS10835 PF04471 Restriction endonuclease HQ398_RS10835 PF14338 Mrr N-terminal domain HQ398_RS10845 PF12161 HsdM N-terminal domain HQ398_RS10845 PF02384 N-6 DNA Methylase HQ398_RS10900 PF00083 Sugar (and other) transporter HQ398_RS10905 PF13181 Tetratricopeptide repeat HQ398_RS10905 PF17128 Domain of unknown function (DUF5107) HQ398_RS10910 PF00480 ROK family HQ398_RS10915 PF12838 4Fe-4S dicluster domain HQ398_RS10915 PF01568 Molydopterin dinucleotide binding domain HQ398_RS10915 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_RS10915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_RS10915 PF00384 Molybdopterin oxidoreductase HQ398_RS10930 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS10935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_RS10935 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_RS10935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_RS10935 PF09317 Domain of unknown function (DUF1974) HQ398_RS10940 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ398_RS10960 PF02108 Flagellar assembly protein FliH HQ398_RS10965 PF06578 YOP proteins translocation protein K (YscK) HQ398_RS10970 PF01514 Secretory protein of YscJ/FliF family HQ398_RS10975 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ398_RS10980 PF09025 YopR, type III needle-polymerisation regulator HQ398_RS10985 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ398_RS10990 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ398_RS11000 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ398_RS11000 PF16693 Inner membrane component of T3SS, periplasmic domain HQ398_RS11005 PF03958 Bacterial type II/III secretion system short domain HQ398_RS11005 PF00263 Bacterial type II and III secretion system protein HQ398_RS11010 PF05932 Tir chaperone protein (CesT) family HQ398_RS11015 PF01609 Transposase DDE domain HQ398_RS11020 PF16806 Antiactivator protein ExsD HQ398_RS11025 PF12833 Helix-turn-helix domain HQ398_RS11040 PF05932 Tir chaperone protein (CesT) family HQ398_RS11045 PF05844 YopD protein HQ398_RS11050 PF04888 Secretion system effector C (SseC) like family HQ398_RS11055 PF07720 Tetratricopeptide repeat HQ398_RS11065 PF07216 LcrG protein HQ398_RS11075 PF00771 FHIPEP family HQ398_RS11095 PF09059 TyeA HQ398_RS11100 PF07201 HrpJ-like domain HQ398_RS11105 PF18269 T3SS EscN ATPase C-terminal domain HQ398_RS11105 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ398_RS11105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_RS11115 PF02120 Flagellar hook-length control protein FliK HQ398_RS11120 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_RS11125 PF00813 FliP family HQ398_RS11130 PF01313 Bacterial export proteins, family 3 HQ398_RS11135 PF01311 Bacterial export proteins, family 1 HQ398_RS11140 PF01312 FlhB HrpN YscU SpaS Family HQ398_RS11155 PF00155 Aminotransferase class I and II HQ398_RS11160 PF02378 Phosphotransferase system, EIIC HQ398_RS11160 PF00367 phosphotransferase system, EIIB HQ398_RS11165 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS11165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ398_RS11175 PF13580 SIS domain HQ398_RS11185 PF02378 Phosphotransferase system, EIIC HQ398_RS11185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_RS11185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_RS11190 PF07690 Major Facilitator Superfamily HQ398_RS11195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_RS11205 PF00849 RNA pseudouridylate synthase HQ398_RS11210 PF00293 NUDIX domain HQ398_RS11220 PF04356 Protein of unknown function (DUF489) HQ398_RS11225 PF08328 Adenylosuccinate lyase C-terminal HQ398_RS11225 PF00206 Lyase HQ398_RS11230 PF08007 Cupin superfamily protein HQ398_RS11240 PF03747 ADP-ribosylglycohydrolase HQ398_RS11250 PF00294 pfkB family carbohydrate kinase HQ398_RS11270 PF00043 Glutathione S-transferase, C-terminal domain HQ398_RS11270 PF13417 Glutathione S-transferase, N-terminal domain HQ398_RS11275 PF01243 Pyridoxamine 5'-phosphate oxidase HQ398_RS11275 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ398_RS11280 PF01029 NusB family HQ398_RS11280 PF01189 16S rRNA methyltransferase RsmB/F HQ398_RS11285 PF01042 Endoribonuclease L-PSP HQ398_RS11290 PF01228 Glycine radical HQ398_RS11290 PF02901 Pyruvate formate lyase-like HQ398_RS11295 PF00871 Acetokinase family HQ398_RS11300 PF03222 Tryptophan/tyrosine permease family HQ398_RS11310 PF00462 Glutaredoxin HQ398_RS11315 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ398_RS11315 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ398_RS11320 PF04333 MlaA lipoprotein HQ398_RS11325 PF03918 Cytochrome C biogenesis protein HQ398_RS11335 PF08534 Redoxin HQ398_RS11340 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ398_RS11340 PF01578 Cytochrome C assembly protein HQ398_RS11345 PF03100 CcmE HQ398_RS11350 PF04995 Heme exporter protein D (CcmD) HQ398_RS11355 PF01578 Cytochrome C assembly protein HQ398_RS11360 PF03379 CcmB protein HQ398_RS11365 PF00005 ABC transporter HQ398_RS11375 PF01584 CheW-like domain HQ398_RS11385 PF13614 AAA domain HQ398_RS11390 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_RS11390 PF00691 OmpA family HQ398_RS11395 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS11400 PF01339 CheB methylesterase HQ398_RS11400 PF00072 Response regulator receiver domain HQ398_RS11405 PF02895 Signal transducing histidine kinase, homodimeric domain HQ398_RS11405 PF01584 CheW-like domain HQ398_RS11405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS11405 PF00072 Response regulator receiver domain HQ398_RS11405 PF01627 Hpt domain HQ398_RS11410 PF04344 Chemotaxis phosphatase, CheZ HQ398_RS11415 PF00072 Response regulator receiver domain HQ398_RS11420 PF04542 Sigma-70 region 2 HQ398_RS11420 PF04539 Sigma-70 region 3 HQ398_RS11420 PF04545 Sigma-70, region 4 HQ398_RS11425 PF10609 NUBPL iron-transfer P-loop NTPase HQ398_RS11430 PF00448 SRP54-type protein, GTPase domain HQ398_RS11435 PF00771 FHIPEP family HQ398_RS11450 PF01313 Bacterial export proteins, family 3 HQ398_RS11455 PF00813 FliP family HQ398_RS11460 PF04347 Flagellar biosynthesis protein, FliO HQ398_RS11465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_RS11470 PF02154 Flagellar motor switch protein FliM HQ398_RS11470 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_RS11490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_RS11490 PF18269 T3SS EscN ATPase C-terminal domain HQ398_RS11500 PF01706 FliG C-terminal domain HQ398_RS11500 PF14841 FliG middle domain HQ398_RS11500 PF14842 FliG N-terminal domain HQ398_RS11505 PF08345 Flagellar M-ring protein C-terminal HQ398_RS11505 PF01514 Secretory protein of YscJ/FliF family HQ398_RS11510 PF02049 Flagellar hook-basal body complex protein FliE HQ398_RS11520 PF00224 Pyruvate kinase, barrel domain HQ398_RS11520 PF02887 Pyruvate kinase, alpha/beta domain HQ398_RS11525 PF01418 Helix-turn-helix domain, rpiR family HQ398_RS11525 PF01380 SIS domain HQ398_RS11530 PF02685 Glucokinase HQ398_RS11555 PF00672 HAMP domain HQ398_RS11555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS11560 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS11565 PF00860 Permease family HQ398_RS11570 PF00390 Malic enzyme, N-terminal domain HQ398_RS11570 PF03949 Malic enzyme, NAD binding domain HQ398_RS11575 PF00072 Response regulator receiver domain HQ398_RS11575 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS11585 PF13247 4Fe-4S dicluster domain HQ398_RS11590 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_RS11590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_RS11590 PF00384 Molybdopterin oxidoreductase HQ398_RS11590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_RS11590 PF12838 4Fe-4S dicluster domain HQ398_RS11590 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_RS11590 PF01568 Molydopterin dinucleotide binding domain HQ398_RS11590 PF00384 Molybdopterin oxidoreductase HQ398_RS11590 PF12838 4Fe-4S dicluster domain HQ398_RS11590 PF01568 Molydopterin dinucleotide binding domain HQ398_RS11630 PF02634 FdhD/NarQ family HQ398_RS11640 PF00989 PAS fold HQ398_RS11640 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS11640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS11645 PF00158 Sigma-54 interaction domain HQ398_RS11645 PF00072 Response regulator receiver domain HQ398_RS11645 PF02954 Bacterial regulatory protein, Fis family HQ398_RS11650 PF12849 PBP superfamily domain HQ398_RS11655 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS11660 PF00005 ABC transporter HQ398_RS11670 PF00994 Probable molybdopterin binding domain HQ398_RS11670 PF03454 MoeA C-terminal region (domain IV) HQ398_RS11670 PF03453 MoeA N-terminal region (domain I and II) HQ398_RS11675 PF04632 Fusaric acid resistance protein family HQ398_RS11700 PF10725 Protein of unknown function (DUF2517) HQ398_RS11720 PF09308 LuxQ, periplasmic HQ398_RS11720 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS11720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS11720 PF00072 Response regulator receiver domain HQ398_RS11725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS11730 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS11735 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS11735 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_RS11740 PF00005 ABC transporter HQ398_RS11740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS11745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_RS11745 PF00005 ABC transporter HQ398_RS11760 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ398_RS11760 PF02838 Glycosyl hydrolase family 20, domain 2 HQ398_RS11775 PF01396 Topoisomerase DNA binding C4 zinc finger HQ398_RS11775 PF01131 DNA topoisomerase HQ398_RS11775 PF08272 Topoisomerase I zinc-ribbon-like HQ398_RS11775 PF01751 Toprim domain HQ398_RS11780 PF04996 Succinylarginine dihydrolase HQ398_RS11805 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS11805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ398_RS11805 PF00072 Response regulator receiver domain HQ398_RS11805 PF01627 Hpt domain HQ398_RS11805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS11805 PF00672 HAMP domain HQ398_RS11810 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS11810 PF00072 Response regulator receiver domain HQ398_RS11820 PF15976 CS1-pili formation C-terminal HQ398_RS11820 PF16967 E-set like domain HQ398_RS11835 PF00989 PAS fold HQ398_RS11835 PF00563 EAL domain HQ398_RS11835 PF01590 GAF domain HQ398_RS11835 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS11840 PF16325 Peptidase family U32 C-terminal domain HQ398_RS11840 PF01136 Peptidase family U32 HQ398_RS11845 PF12838 4Fe-4S dicluster domain HQ398_RS11855 PF02635 DsrE/DsrF-like family HQ398_RS11860 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS11865 PF07690 Major Facilitator Superfamily HQ398_RS11870 PF08496 Peptidase family S49 N-terminal HQ398_RS11870 PF01343 Peptidase family S49 HQ398_RS11875 PF00106 short chain dehydrogenase HQ398_RS11880 PF03466 LysR substrate binding domain HQ398_RS11880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS11885 PF07690 Major Facilitator Superfamily HQ398_RS11890 PF00155 Aminotransferase class I and II HQ398_RS11905 PF00709 Adenylosuccinate synthetase HQ398_RS11910 PF01161 Phosphatidylethanolamine-binding protein HQ398_RS11930 PF03167 Uracil DNA glycosylase superfamily HQ398_RS11940 PF01228 Glycine radical HQ398_RS11945 PF00375 Sodium:dicarboxylate symporter family HQ398_RS11950 PF00793 DAHP synthetase I family HQ398_RS11955 PF13369 Transglutaminase-like superfamily HQ398_RS11970 PF03462 PCRF domain HQ398_RS11970 PF00472 RF-1 domain HQ398_RS11975 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ398_RS11975 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ398_RS11975 PF01488 Shikimate / quinate 5-dehydrogenase HQ398_RS11980 PF03550 Outer membrane lipoprotein LolB HQ398_RS11985 PF08544 GHMP kinases C terminal HQ398_RS11985 PF00288 GHMP kinases N terminal domain HQ398_RS11995 PF14572 Phosphoribosyl synthetase-associated domain HQ398_RS11995 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ398_RS12000 PF02872 5'-nucleotidase, C-terminal domain HQ398_RS12000 PF00149 Calcineurin-like phosphoesterase HQ398_RS12005 PF01195 Peptidyl-tRNA hydrolase HQ398_RS12010 PF06071 Protein of unknown function (DUF933) HQ398_RS12010 PF01926 50S ribosome-binding GTPase HQ398_RS12015 PF00171 Aldehyde dehydrogenase family HQ398_RS12020 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS12025 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS12030 PF00005 ABC transporter HQ398_RS12030 PF08402 TOBE domain HQ398_RS12035 PF13416 Bacterial extracellular solute-binding protein HQ398_RS12040 PF03466 LysR substrate binding domain HQ398_RS12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS12085 PF03600 Citrate transporter HQ398_RS12085 PF02080 TrkA-C domain HQ398_RS12090 PF04973 Nicotinamide mononucleotide transporter HQ398_RS12095 PF01048 Phosphorylase superfamily HQ398_RS12105 PF04266 ASCH domain HQ398_RS12115 PF00128 Alpha amylase, catalytic domain HQ398_RS12115 PF11941 Domain of unknown function (DUF3459) HQ398_RS12120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_RS12120 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ398_RS12120 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ398_RS12120 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ398_RS12120 PF10371 Domain of unknown function HQ398_RS12125 PF07690 Major Facilitator Superfamily HQ398_RS12130 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS12145 PF00171 Aldehyde dehydrogenase family HQ398_RS12150 PF04958 Arginine N-succinyltransferase beta subunit HQ398_RS12160 PF00117 Glutamine amidotransferase class-I HQ398_RS12170 PF00579 tRNA synthetases class I (W and Y) HQ398_RS12175 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS12180 PF00834 Ribulose-phosphate 3 epimerase family HQ398_RS12185 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ398_RS12195 PF01761 3-dehydroquinate synthase HQ398_RS12200 PF01202 Shikimate kinase HQ398_RS12205 PF11741 AMIN domain HQ398_RS12205 PF00263 Bacterial type II and III secretion system protein HQ398_RS12205 PF03958 Bacterial type II/III secretion system short domain HQ398_RS12205 PF07660 Secretin and TonB N terminus short domain HQ398_RS12215 PF04350 Pilus assembly protein, PilO HQ398_RS12225 PF11104 Type IV pilus assembly protein PilM; HQ398_RS12230 PF17092 Penicillin-binding protein OB-like domain HQ398_RS12230 PF00912 Transglycosylase HQ398_RS12230 PF00905 Penicillin binding protein transpeptidase domain HQ398_RS12235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS12235 PF03466 LysR substrate binding domain HQ398_RS12240 PF02743 Cache domain HQ398_RS12240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS12240 PF00672 HAMP domain HQ398_RS12265 PF01551 Peptidase family M23 HQ398_RS12265 PF08525 Opacity-associated protein A N-terminal motif HQ398_RS12265 PF01476 LysM domain HQ398_RS12275 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ398_RS12275 PF00924 Mechanosensitive ion channel HQ398_RS12275 PF12795 Mechanosensitive ion channel porin domain HQ398_RS12280 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ398_RS12285 PF00672 HAMP domain HQ398_RS12285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS12285 PF02743 Cache domain HQ398_RS12290 PF02910 Fumarate reductase flavoprotein C-term HQ398_RS12290 PF00890 FAD binding domain HQ398_RS12295 PF13183 4Fe-4S dicluster domain HQ398_RS12295 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ398_RS12300 PF02300 Fumarate reductase subunit C HQ398_RS12305 PF02313 Fumarate reductase subunit D HQ398_RS12310 PF07670 Nucleoside recognition HQ398_RS12315 PF07670 Nucleoside recognition HQ398_RS12320 PF07687 Peptidase dimerisation domain HQ398_RS12320 PF01546 Peptidase family M20/M25/M40 HQ398_RS12330 PF06224 Winged helix DNA-binding domain HQ398_RS12335 PF17932 Tetracyclin repressor-like, C-terminal domain HQ398_RS12335 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS12345 PF01266 FAD dependent oxidoreductase HQ398_RS12360 PF13193 AMP-binding enzyme C-terminal domain HQ398_RS12360 PF00501 AMP-binding enzyme HQ398_RS12385 PF08521 Two-component sensor kinase N-terminal HQ398_RS12385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS12385 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS12395 PF00478 IMP dehydrogenase / GMP reductase domain HQ398_RS12405 PF08207 Elongation factor P (EF-P) KOW-like domain HQ398_RS12405 PF01132 Elongation factor P (EF-P) OB domain HQ398_RS12405 PF09285 Elongation factor P, C-terminal HQ398_RS12415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_RS12415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_RS12425 PF03466 LysR substrate binding domain HQ398_RS12425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS12430 PF01979 Amidohydrolase family HQ398_RS12430 PF13382 Adenine deaminase C-terminal domain HQ398_RS12435 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ398_RS12440 PF03606 C4-dicarboxylate anaerobic carrier HQ398_RS12450 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS12460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS12460 PF03466 LysR substrate binding domain HQ398_RS12465 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS12470 PF00857 Isochorismatase family HQ398_RS12480 PF01494 FAD binding domain HQ398_RS12485 PF04055 Radical SAM superfamily HQ398_RS12485 PF00919 Uncharacterized protein family UPF0004 HQ398_RS12485 PF01938 TRAM domain HQ398_RS12490 PF02562 PhoH-like protein HQ398_RS12495 PF02130 Uncharacterized protein family UPF0054 HQ398_RS12500 PF03471 Transporter associated domain HQ398_RS12500 PF00571 CBS domain HQ398_RS12510 PF02508 Rnf-Nqr subunit, membrane protein HQ398_RS12520 PF17768 RecJ OB domain HQ398_RS12520 PF02272 DHHA1 domain HQ398_RS12520 PF01368 DHH family HQ398_RS12530 PF01741 Large-conductance mechanosensitive channel, MscL HQ398_RS12535 PF02899 Phage integrase, N-terminal SAM-like domain HQ398_RS12535 PF00589 Phage integrase family HQ398_RS12540 PF00258 Flavodoxin HQ398_RS12545 PF01523 Putative modulator of DNA gyrase HQ398_RS12550 PF01523 Putative modulator of DNA gyrase HQ398_RS12555 PF02463 RecF/RecN/SMC N terminal domain HQ398_RS12560 PF07295 Zinc-ribbon containing domain HQ398_RS12565 PF08264 Anticodon-binding domain of tRNA HQ398_RS12565 PF00133 tRNA synthetases class I (I, L, M and V) HQ398_RS12565 PF13603 Leucyl-tRNA synthetase, Domain 2 HQ398_RS12580 PF01467 Cytidylyltransferase-like HQ398_RS12595 PF03717 Penicillin-binding Protein dimerisation domain HQ398_RS12595 PF00905 Penicillin binding protein transpeptidase domain HQ398_RS12600 PF01098 Cell cycle protein HQ398_RS12605 PF13406 Transglycosylase SLT domain HQ398_RS12615 PF00768 D-alanyl-D-alanine carboxypeptidase HQ398_RS12615 PF07943 Penicillin-binding protein 5, C-terminal domain HQ398_RS12620 PF04359 Protein of unknown function (DUF493) HQ398_RS12625 PF03099 Biotin/lipoate A/B protein ligase family HQ398_RS12630 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ398_RS12630 PF04055 Radical SAM superfamily HQ398_RS12650 PF07023 Protein of unknown function (DUF1315) HQ398_RS12655 PF00710 Asparaginase, N-terminal HQ398_RS12655 PF17763 Glutaminase/Asparaginase C-terminal domain HQ398_RS12660 PF03616 Sodium/glutamate symporter HQ398_RS12665 PF02743 Cache domain HQ398_RS12665 PF00672 HAMP domain HQ398_RS12665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS12675 PF00152 tRNA synthetases class II (D, K and N) HQ398_RS12675 PF01336 OB-fold nucleic acid binding domain HQ398_RS12680 PF00175 Oxidoreductase NAD-binding domain HQ398_RS12680 PF00667 FAD binding domain HQ398_RS12680 PF00258 Flavodoxin HQ398_RS12685 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ398_RS12685 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ398_RS12690 PF01507 Phosphoadenosine phosphosulfate reductase family HQ398_RS12695 PF00186 Dihydrofolate reductase HQ398_RS12700 PF12821 Threonine/Serine exporter, ThrE HQ398_RS12705 PF06738 Putative threonine/serine exporter HQ398_RS12715 PF00994 Probable molybdopterin binding domain HQ398_RS12725 PF06004 Bacterial protein of unknown function (DUF903) HQ398_RS12730 PF00581 Rhodanese-like domain HQ398_RS12735 PF04960 Glutaminase HQ398_RS12740 PF04320 Protein with unknown function (DUF469) HQ398_RS12745 PF02390 Putative methyltransferase HQ398_RS12750 PF00155 Aminotransferase class I and II HQ398_RS12755 PF12792 CSS motif domain associated with EAL HQ398_RS12755 PF00563 EAL domain HQ398_RS12770 PF00005 ABC transporter HQ398_RS12775 PF13472 GDSL-like Lipase/Acylhydrolase family HQ398_RS12780 PF01584 CheW-like domain HQ398_RS12780 PF00072 Response regulator receiver domain HQ398_RS12785 PF06483 Chitinase C HQ398_RS12785 PF00704 Glycosyl hydrolases family 18 HQ398_RS12820 PF18416 N-acetylglucosamine binding protein domain 2 HQ398_RS12820 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ398_RS12825 PF17945 Beta/Gamma crystallin HQ398_RS12825 PF12561 ToxR activated gene A lipoprotein domain HQ398_RS12830 PF08329 Chitinase A, N-terminal domain HQ398_RS12830 PF00704 Glycosyl hydrolases family 18 HQ398_RS12845 PF13443 Cro/C1-type HTH DNA-binding domain HQ398_RS12855 PF12832 MFS_1 like family HQ398_RS12860 PF01609 Transposase DDE domain HQ398_RS12890 PF05638 Type VI secretion system effector, Hcp HQ398_RS12895 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS12895 PF03472 Autoinducer binding domain HQ398_RS12920 PF01243 Pyridoxamine 5'-phosphate oxidase HQ398_RS12925 PF06228 Haem utilisation ChuX/HutX HQ398_RS12935 PF01032 FecCD transport family HQ398_RS12940 PF00005 ABC transporter HQ398_RS12950 PF07694 5TMR of 5TMR-LYT HQ398_RS12950 PF06580 Histidine kinase HQ398_RS12955 PF04397 LytTr DNA-binding domain HQ398_RS12955 PF00072 Response regulator receiver domain HQ398_RS12960 PF13722 5TM C-terminal transporter carbon starvation CstA HQ398_RS12960 PF02554 Carbon starvation protein CstA HQ398_RS12965 PF03575 Peptidase family S51 HQ398_RS12970 PF01894 Uncharacterised protein family UPF0047 HQ398_RS12975 PF01168 Alanine racemase, N-terminal domain HQ398_RS12975 PF00842 Alanine racemase, C-terminal domain HQ398_RS12980 PF00772 DnaB-like helicase N terminal domain HQ398_RS12980 PF03796 DnaB-like helicase C terminal domain HQ398_RS12990 PF00149 Calcineurin-like phosphoesterase HQ398_RS12990 PF02872 5'-nucleotidase, C-terminal domain HQ398_RS13015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_RS13015 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ398_RS13025 PF04102 SlyX HQ398_RS13030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_RS13035 PF09526 Probable metal-binding protein (DUF2387) HQ398_RS13045 PF00072 Response regulator receiver domain HQ398_RS13045 PF01584 CheW-like domain HQ398_RS13055 PF00360 Phytochrome region HQ398_RS13055 PF01590 GAF domain HQ398_RS13055 PF00563 EAL domain HQ398_RS13055 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS13060 PF06794 Uncharacterised protein family (UPF0270) HQ398_RS13065 PF00485 Phosphoribulokinase / Uridine kinase family HQ398_RS13080 PF02566 OsmC-like protein HQ398_RS13085 PF00027 Cyclic nucleotide-binding domain HQ398_RS13085 PF13545 Crp-like helix-turn-helix domain HQ398_RS13095 PF00267 Gram-negative porin HQ398_RS13105 PF00582 Universal stress protein family HQ398_RS13130 PF04227 Indigoidine synthase A like protein HQ398_RS13160 PF00550 Phosphopantetheine attachment site HQ398_RS13165 PF00550 Phosphopantetheine attachment site HQ398_RS13175 PF13193 AMP-binding enzyme C-terminal domain HQ398_RS13175 PF00501 AMP-binding enzyme HQ398_RS13180 PF07977 FabA-like domain HQ398_RS13190 PF00221 Aromatic amino acid lyase HQ398_RS13215 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ398_RS13215 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ398_RS13220 PF07977 FabA-like domain HQ398_RS13230 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ398_RS13230 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ398_RS13235 PF00561 alpha/beta hydrolase fold HQ398_RS13250 PF06877 Regulator of ribonuclease activity B HQ398_RS13255 PF00563 EAL domain HQ398_RS13255 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS13255 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS13325 PF06826 Predicted Permease Membrane Region HQ398_RS13325 PF02080 TrkA-C domain HQ398_RS13335 PF00282 Pyridoxal-dependent decarboxylase conserved domain HQ398_RS13340 PF04279 Intracellular septation protein A HQ398_RS13345 PF03795 YCII-related domain HQ398_RS13350 PF00459 Inositol monophosphatase family HQ398_RS13360 PF08013 Tagatose 6 phosphate kinase HQ398_RS13365 PF01380 SIS domain HQ398_RS13370 PF03830 PTS system sorbose subfamily IIB component HQ398_RS13375 PF03609 PTS system sorbose-specific iic component HQ398_RS13380 PF03613 PTS system mannose/fructose/sorbose family IID component HQ398_RS13385 PF03610 PTS system fructose IIA component HQ398_RS13390 PF01979 Amidohydrolase family HQ398_RS13395 PF01116 Fructose-bisphosphate aldolase class-II HQ398_RS13400 PF02378 Phosphotransferase system, EIIC HQ398_RS13400 PF00367 phosphotransferase system, EIIB HQ398_RS13405 PF00155 Aminotransferase class I and II HQ398_RS13410 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ398_RS13415 PF02565 Recombination protein O C terminal HQ398_RS13415 PF11967 Recombination protein O N terminal HQ398_RS13420 PF07650 KH domain HQ398_RS13420 PF01926 50S ribosome-binding GTPase HQ398_RS13425 PF14622 Ribonuclease-III-like HQ398_RS13425 PF00035 Double-stranded RNA binding motif HQ398_RS13430 PF10502 Signal peptidase, peptidase S26 HQ398_RS13435 PF00009 Elongation factor Tu GTP binding domain HQ398_RS13435 PF00679 Elongation factor G C-terminus HQ398_RS13435 PF06421 GTP-binding protein LepA C-terminus HQ398_RS13435 PF03144 Elongation factor Tu domain 2 HQ398_RS13445 PF03888 MucB/RseB N-terminal domain HQ398_RS13445 PF17188 MucB/RseB C-terminal domain HQ398_RS13450 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ398_RS13450 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ398_RS13455 PF04542 Sigma-70 region 2 HQ398_RS13455 PF08281 Sigma-70, region 4 HQ398_RS13460 PF00890 FAD binding domain HQ398_RS13460 PF02910 Fumarate reductase flavoprotein C-term HQ398_RS13470 PF03937 Flavinator of succinate dehydrogenase HQ398_RS13480 PF03466 LysR substrate binding domain HQ398_RS13480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS13495 PF03091 CutA1 divalent ion tolerance protein HQ398_RS13500 PF11412 Disulphide bond corrector protein DsbC HQ398_RS13500 PF02683 Cytochrome C biogenesis protein transmembrane region HQ398_RS13520 PF01266 FAD dependent oxidoreductase HQ398_RS13525 PF01116 Fructose-bisphosphate aldolase class-II HQ398_RS13530 PF00162 Phosphoglycerate kinase HQ398_RS13535 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ398_RS13535 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ398_RS13540 PF00480 ROK family HQ398_RS13545 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ398_RS13550 PF09297 NADH pyrophosphatase zinc ribbon domain HQ398_RS13550 PF00293 NUDIX domain HQ398_RS13555 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HQ398_RS13555 PF14850 DNA-binding domain of Proline dehydrogenase HQ398_RS13555 PF01619 Proline dehydrogenase HQ398_RS13555 PF00171 Aldehyde dehydrogenase family HQ398_RS13560 PF08239 Bacterial SH3 domain HQ398_RS13565 PF00520 Ion transport protein HQ398_RS13565 PF00027 Cyclic nucleotide-binding domain HQ398_RS13570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS13570 PF00672 HAMP domain HQ398_RS13570 PF02743 Cache domain HQ398_RS13575 PF08335 GlnD PII-uridylyltransferase HQ398_RS13575 PF03710 Glutamate-ammonia ligase adenylyltransferase HQ398_RS13595 PF00072 Response regulator receiver domain HQ398_RS13595 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS13610 PF00293 NUDIX domain HQ398_RS13610 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ398_RS13610 PF09297 NADH pyrophosphatase zinc ribbon domain HQ398_RS13640 PF00445 Ribonuclease T2 family HQ398_RS13650 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HQ398_RS13660 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS13665 PF00270 DEAD/DEAH box helicase HQ398_RS13665 PF00271 Helicase conserved C-terminal domain HQ398_RS13670 PF00939 Sodium:sulfate symporter transmembrane region HQ398_RS13675 PF00753 Metallo-beta-lactamase superfamily HQ398_RS13680 PF01609 Transposase DDE domain HQ398_RS13690 PF01425 Amidase HQ398_RS13695 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ398_RS13700 PF03466 LysR substrate binding domain HQ398_RS13700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS13710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ398_RS13715 PF00140 Sigma-70 factor, region 1.2 HQ398_RS13715 PF04542 Sigma-70 region 2 HQ398_RS13715 PF04539 Sigma-70 region 3 HQ398_RS13715 PF04545 Sigma-70, region 4 HQ398_RS13720 PF01551 Peptidase family M23 HQ398_RS13720 PF01476 LysM domain HQ398_RS13725 PF09335 SNARE associated Golgi protein HQ398_RS13735 PF01975 Survival protein SurE HQ398_RS13740 PF01142 tRNA pseudouridine synthase D (TruD) HQ398_RS13745 PF02542 YgbB family HQ398_RS13755 PF04977 Septum formation initiator HQ398_RS13760 PF00474 Sodium:solute symporter family HQ398_RS13770 PF17969 L,D-transpeptidase C-terminal domain HQ398_RS13770 PF03734 L,D-transpeptidase catalytic domain HQ398_RS13775 PF00924 Mechanosensitive ion channel HQ398_RS13780 PF00871 Acetokinase family HQ398_RS13785 PF04074 YhcH/YjgK/YiaL HQ398_RS13795 PF01177 Asp/Glu/Hydantoin racemase HQ398_RS13800 PF01810 LysE type translocator HQ398_RS13825 PF01380 SIS domain HQ398_RS13825 PF00571 CBS domain HQ398_RS13830 PF00005 ABC transporter HQ398_RS13830 PF12848 ABC transporter HQ398_RS13840 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ398_RS13850 PF01609 Transposase DDE domain HQ398_RS13855 PF00561 alpha/beta hydrolase fold HQ398_RS13865 PF00113 Enolase, C-terminal TIM barrel domain HQ398_RS13865 PF03952 Enolase, N-terminal domain HQ398_RS13870 PF06418 CTP synthase N-terminus HQ398_RS13870 PF00117 Glutamine amidotransferase class-I HQ398_RS13875 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ398_RS13880 PF13291 ACT domain HQ398_RS13880 PF04607 Region found in RelA / SpoT proteins HQ398_RS13880 PF02824 TGS domain HQ398_RS13890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ398_RS13890 PF01627 Hpt domain HQ398_RS13890 PF00072 Response regulator receiver domain HQ398_RS13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS13890 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS13890 PF00672 HAMP domain HQ398_RS13895 PF07308 Protein of unknown function (DUF1456) HQ398_RS13900 PF01510 N-acetylmuramoyl-L-alanine amidase HQ398_RS13905 PF00210 Ferritin-like domain HQ398_RS13910 PF03063 Prismane/CO dehydrogenase family HQ398_RS13915 PF00970 Oxidoreductase FAD-binding domain HQ398_RS13915 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_RS13915 PF00175 Oxidoreductase NAD-binding domain HQ398_RS13920 PF16363 GDP-mannose 4,6 dehydratase HQ398_RS13925 PF01569 PAP2 superfamily HQ398_RS13930 PF01225 Mur ligase family, catalytic domain HQ398_RS13930 PF02875 Mur ligase family, glutamate ligase domain HQ398_RS13930 PF08245 Mur ligase middle domain HQ398_RS13935 PF02441 Flavoprotein HQ398_RS13940 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS13945 PF00156 Phosphoribosyl transferase domain HQ398_RS13950 PF00005 ABC transporter HQ398_RS13955 PF01061 ABC-2 type transporter HQ398_RS13960 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HQ398_RS13965 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ398_RS13985 PF00375 Sodium:dicarboxylate symporter family HQ398_RS13995 PF02569 Pantoate-beta-alanine ligase HQ398_RS14000 PF02548 Ketopantoate hydroxymethyltransferase HQ398_RS14005 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ398_RS14010 PF01743 Poly A polymerase head domain HQ398_RS14010 PF12626 Polymerase A arginine-rich C-terminus HQ398_RS14010 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ398_RS14015 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ398_RS14020 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ398_RS14025 PF03749 Sugar fermentation stimulation protein RE domain HQ398_RS14025 PF17746 SfsA N-terminal OB domain HQ398_RS14035 PF04408 Helicase associated domain (HA2) HQ398_RS14035 PF00271 Helicase conserved C-terminal domain HQ398_RS14035 PF08482 ATP-dependent helicase C-terminal HQ398_RS14035 PF00270 DEAD/DEAH box helicase HQ398_RS14040 PF00912 Transglycosylase HQ398_RS14040 PF00905 Penicillin binding protein transpeptidase domain HQ398_RS14040 PF14814 Bifunctional transglycosylase second domain HQ398_RS14045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_RS14050 PF00893 Small Multidrug Resistance protein HQ398_RS14055 PF00893 Small Multidrug Resistance protein HQ398_RS14065 PF11849 Domain of unknown function (DUF3369) HQ398_RS14070 PF00719 Inorganic pyrophosphatase HQ398_RS14085 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ398_RS14100 PF00005 ABC transporter HQ398_RS14120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS14120 PF00672 HAMP domain HQ398_RS14120 PF17200 Single Cache domain 2 HQ398_RS14140 PF00009 Elongation factor Tu GTP binding domain HQ398_RS14145 PF01507 Phosphoadenosine phosphosulfate reductase family HQ398_RS14150 PF10414 Sirohaem synthase dimerisation region HQ398_RS14150 PF14824 Sirohaem biosynthesis protein central HQ398_RS14150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_RS14155 PF01145 SPFH domain / Band 7 family HQ398_RS14155 PF16200 C-terminal region of band_7 HQ398_RS14160 PF01957 NfeD-like C-terminal, partner-binding HQ398_RS14165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS14165 PF00672 HAMP domain HQ398_RS14170 PF02445 Quinolinate synthetase A protein HQ398_RS14175 PF01263 Aldose 1-epimerase HQ398_RS14180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ398_RS14180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ398_RS14185 PF02446 4-alpha-glucanotransferase HQ398_RS14190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_RS14190 PF00128 Alpha amylase, catalytic domain HQ398_RS14190 PF02806 Alpha amylase, C-terminal all-beta domain HQ398_RS14195 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_RS14195 PF00128 Alpha amylase, catalytic domain HQ398_RS14200 PF01641 SelR domain HQ398_RS14210 PF00293 NUDIX domain HQ398_RS14220 PF01037 Lrp/AsnC ligand binding domain HQ398_RS14230 PF07690 Major Facilitator Superfamily HQ398_RS14250 PF00209 Sodium:neurotransmitter symporter family HQ398_RS14260 PF00209 Sodium:neurotransmitter symporter family HQ398_RS14325 PF13174 Tetratricopeptide repeat HQ398_RS14325 PF16331 TolA binding protein trimerisation HQ398_RS14330 PF00691 OmpA family HQ398_RS14335 PF07676 WD40-like Beta Propeller Repeat HQ398_RS14335 PF04052 TolB amino-terminal domain HQ398_RS14345 PF02472 Biopolymer transport protein ExbD/TolR HQ398_RS14350 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS14355 PF03061 Thioesterase superfamily HQ398_RS14360 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ398_RS14365 PF08173 Membrane bound YbgT-like protein HQ398_RS14370 PF02322 Cytochrome bd terminal oxidase subunit II HQ398_RS14375 PF01654 Cytochrome bd terminal oxidase subunit I HQ398_RS14380 PF17864 RuvB AAA lid domain HQ398_RS14380 PF05491 RuvB C-terminal winged helix domain HQ398_RS14380 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ398_RS14385 PF01330 RuvA N terminal domain HQ398_RS14385 PF07499 RuvA, C-terminal domain HQ398_RS14390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS14390 PF00672 HAMP domain HQ398_RS14390 PF12729 Four helix bundle sensory module for signal transduction HQ398_RS14395 PF01810 LysE type translocator HQ398_RS14400 PF03472 Autoinducer binding domain HQ398_RS14400 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS14405 PF00765 Autoinducer synthase HQ398_RS14410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS14410 PF03466 LysR substrate binding domain HQ398_RS14415 PF17876 Cold shock domain HQ398_RS14415 PF08206 Ribonuclease B OB domain HQ398_RS14415 PF00773 RNB domain HQ398_RS14420 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS14420 PF00360 Phytochrome region HQ398_RS14420 PF01590 GAF domain HQ398_RS14420 PF00563 EAL domain HQ398_RS14430 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS14435 PF17209 Hfq protein HQ398_RS14440 PF04403 Paraquat-inducible protein A HQ398_RS14445 PF02470 MlaD protein HQ398_RS14450 PF03886 ABC-type transport auxiliary lipoprotein component HQ398_RS14455 PF01938 TRAM domain HQ398_RS14455 PF05958 tRNA (Uracil-5-)-methyltransferase HQ398_RS14460 PF03129 Anticodon binding domain HQ398_RS14460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ398_RS14460 PF04073 Aminoacyl-tRNA editing domain HQ398_RS14470 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS14480 PF00873 AcrB/AcrD/AcrF family HQ398_RS14485 PF00106 short chain dehydrogenase HQ398_RS14500 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS14505 PF10952 Protein of unknown function (DUF2753) HQ398_RS14510 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS14520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS14530 PF01207 Dihydrouridine synthase (Dus) HQ398_RS14535 PF01475 Ferric uptake regulator family HQ398_RS14550 PF05525 Branched-chain amino acid transport protein HQ398_RS14555 PF05525 Branched-chain amino acid transport protein HQ398_RS14565 PF00271 Helicase conserved C-terminal domain HQ398_RS14565 PF00270 DEAD/DEAH box helicase HQ398_RS14570 PF13673 Acetyltransferase (GNAT) domain HQ398_RS14585 PF00588 SpoU rRNA Methylase family HQ398_RS14585 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ398_RS14590 PF17876 Cold shock domain HQ398_RS14590 PF08461 Ribonuclease R winged-helix domain HQ398_RS14590 PF08206 Ribonuclease B OB domain HQ398_RS14590 PF00773 RNB domain HQ398_RS14590 PF00575 S1 RNA binding domain HQ398_RS14595 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS14600 PF00691 OmpA family HQ398_RS14600 PF01389 OmpA-like transmembrane domain HQ398_RS14605 PF00657 GDSL-like Lipase/Acylhydrolase HQ398_RS14615 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ398_RS14615 PF01464 Transglycosylase SLT domain HQ398_RS14620 PF04362 Bacterial Fe(2+) trafficking HQ398_RS14625 PF10576 Iron-sulfur binding domain of endonuclease III HQ398_RS14625 PF00633 Helix-hairpin-helix motif HQ398_RS14625 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ398_RS14625 PF14815 NUDIX domain HQ398_RS14630 PF01966 HD domain HQ398_RS14630 PF01743 Poly A polymerase head domain HQ398_RS14630 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ398_RS14635 PF02028 BCCT, betaine/carnitine/choline family transporter HQ398_RS14650 PF04222 Protein of unknown function (DUF416) HQ398_RS14655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_RS14660 PF01551 Peptidase family M23 HQ398_RS14660 PF08525 Opacity-associated protein A N-terminal motif HQ398_RS14660 PF01476 LysM domain HQ398_RS14680 PF01297 Zinc-uptake complex component A periplasmic HQ398_RS14685 PF00005 ABC transporter HQ398_RS14690 PF00950 ABC 3 transport family HQ398_RS14695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS14695 PF03466 LysR substrate binding domain HQ398_RS14700 PF00892 EamA-like transporter family HQ398_RS14705 PF03167 Uracil DNA glycosylase superfamily HQ398_RS14710 PF00892 EamA-like transporter family HQ398_RS14720 PF01541 GIY-YIG catalytic domain HQ398_RS14735 PF04012 PspA/IM30 family HQ398_RS14740 PF01553 Acyltransferase HQ398_RS14760 PF00578 AhpC/TSA family HQ398_RS14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS14765 PF03466 LysR substrate binding domain HQ398_RS14770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ398_RS14770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ398_RS14780 PF00226 DnaJ domain HQ398_RS14780 PF01556 DnaJ C terminal domain HQ398_RS14780 PF00684 DnaJ central domain HQ398_RS14800 PF00854 POT family HQ398_RS14810 PF02600 Disulfide bond formation protein DsbB HQ398_RS14820 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ398_RS14820 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ398_RS14825 PF00204 DNA gyrase B HQ398_RS14825 PF01751 Toprim domain HQ398_RS14825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS14825 PF00986 DNA gyrase B subunit, carboxyl terminus HQ398_RS14830 PF04632 Fusaric acid resistance protein family HQ398_RS14835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS14835 PF00529 HlyD membrane-fusion protein of T1SS HQ398_RS14840 PF07869 Protein of unknown function (DUF1656) HQ398_RS14845 PF00293 NUDIX domain HQ398_RS14850 PF05728 Uncharacterised protein family (UPF0227) HQ398_RS14855 PF00149 Calcineurin-like phosphoesterase HQ398_RS14860 PF06853 Protein of unknown function (DUF1249) HQ398_RS14865 PF00293 NUDIX domain HQ398_RS14870 PF02321 Outer membrane efflux protein HQ398_RS14875 PF00294 pfkB family carbohydrate kinase HQ398_RS14875 PF01467 Cytidylyltransferase-like HQ398_RS14880 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ398_RS14885 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_RS14885 PF02378 Phosphotransferase system, EIIC HQ398_RS14885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_RS14890 PF01232 Mannitol dehydrogenase Rossmann domain HQ398_RS14890 PF08125 Mannitol dehydrogenase C-terminal domain HQ398_RS14895 PF05068 Mannitol repressor HQ398_RS14915 PF01544 CorA-like Mg2+ transporter protein HQ398_RS14920 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HQ398_RS14935 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ398_RS14940 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_RS14940 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_RS14940 PF07670 Nucleoside recognition HQ398_RS14945 PF00270 DEAD/DEAH box helicase HQ398_RS14945 PF00271 Helicase conserved C-terminal domain HQ398_RS14945 PF03880 DbpA RNA binding domain HQ398_RS14965 PF01040 UbiA prenyltransferase family HQ398_RS14970 PF00425 chorismate binding enzyme HQ398_RS14980 PF12697 Alpha/beta hydrolase family HQ398_RS14985 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS14990 PF13378 Enolase C-terminal domain-like HQ398_RS14995 PF00501 AMP-binding enzyme HQ398_RS15000 PF01752 Collagenase HQ398_RS15000 PF08453 Peptidase family M9 N-terminal HQ398_RS15010 PF01584 CheW-like domain HQ398_RS15010 PF00072 Response regulator receiver domain HQ398_RS15015 PF00106 short chain dehydrogenase HQ398_RS15020 PF17176 tRNA-binding domain HQ398_RS15020 PF05127 Helicase HQ398_RS15020 PF13718 GNAT acetyltransferase 2 HQ398_RS15020 PF08351 Domain of unknown function (DUF1726) HQ398_RS15035 PF00210 Ferritin-like domain HQ398_RS15040 PF02142 MGS-like domain HQ398_RS15045 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS15055 PF03577 Peptidase family C69 HQ398_RS15060 PF00106 short chain dehydrogenase HQ398_RS15080 PF02308 MgtC family HQ398_RS15085 PF16657 Maltogenic Amylase, C-terminal domain HQ398_RS15085 PF02903 Alpha amylase, N-terminal ig-like domain HQ398_RS15085 PF00128 Alpha amylase, catalytic domain HQ398_RS15100 PF00884 Sulfatase HQ398_RS15105 PF01037 Lrp/AsnC ligand binding domain HQ398_RS15115 PF04204 Homoserine O-succinyltransferase HQ398_RS15120 PF01966 HD domain HQ398_RS15120 PF12072 Domain of unknown function (DUF3552) HQ398_RS15120 PF00013 KH domain HQ398_RS15125 PF00994 Probable molybdopterin binding domain HQ398_RS15125 PF02464 Competence-damaged protein HQ398_RS15145 PF04363 Protein of unknown function (DUF496) HQ398_RS15175 PF18337 RapA N-terminal Tudor like domain HQ398_RS15175 PF18339 RapA N-terminal Tudor like domain 1 HQ398_RS15175 PF00176 SNF2 family N-terminal domain HQ398_RS15175 PF12137 RNA polymerase recycling family C-terminal HQ398_RS15175 PF00271 Helicase conserved C-terminal domain HQ398_RS15180 PF00849 RNA pseudouridylate synthase HQ398_RS15190 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_RS15190 PF12464 Maltose acetyltransferase HQ398_RS15195 PF11941 Domain of unknown function (DUF3459) HQ398_RS15195 PF00128 Alpha amylase, catalytic domain HQ398_RS15200 PF00367 phosphotransferase system, EIIB HQ398_RS15200 PF02378 Phosphotransferase system, EIIC HQ398_RS15205 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS15220 PF00710 Asparaginase, N-terminal HQ398_RS15220 PF17763 Glutaminase/Asparaginase C-terminal domain HQ398_RS15225 PF00571 CBS domain HQ398_RS15225 PF03471 Transporter associated domain HQ398_RS15225 PF01595 Cyclin M transmembrane N-terminal domain HQ398_RS15230 PF09335 SNARE associated Golgi protein HQ398_RS15235 PF00768 D-alanyl-D-alanine carboxypeptidase HQ398_RS15270 PF02599 Global regulator protein family HQ398_RS15275 PF13840 ACT domain HQ398_RS15275 PF00696 Amino acid kinase family HQ398_RS15275 PF01842 ACT domain HQ398_RS15280 PF01411 tRNA synthetases class II (A) HQ398_RS15280 PF02272 DHHA1 domain HQ398_RS15280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ398_RS15285 PF02631 RecX family HQ398_RS15290 PF00154 recA bacterial DNA recombination protein HQ398_RS15295 PF02464 Competence-damaged protein HQ398_RS15300 PF01624 MutS domain I HQ398_RS15300 PF05188 MutS domain II HQ398_RS15300 PF05192 MutS domain III HQ398_RS15300 PF05190 MutS family domain IV HQ398_RS15300 PF00488 MutS domain V HQ398_RS15305 PF01734 Patatin-like phospholipase HQ398_RS15315 PF04172 LrgB-like family HQ398_RS15320 PF03788 LrgA family HQ398_RS15325 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS15325 PF00155 Aminotransferase class I and II HQ398_RS15340 PF03466 LysR substrate binding domain HQ398_RS15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS15355 PF04073 Aminoacyl-tRNA editing domain HQ398_RS15365 PF00311 Phosphoenolpyruvate carboxylase HQ398_RS15370 PF01546 Peptidase family M20/M25/M40 HQ398_RS15370 PF07687 Peptidase dimerisation domain HQ398_RS15375 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ398_RS15375 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ398_RS15380 PF00696 Amino acid kinase family HQ398_RS15385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_RS15385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_RS15390 PF00764 Arginosuccinate synthase HQ398_RS15395 PF14698 Argininosuccinate lyase C-terminal HQ398_RS15395 PF00206 Lyase HQ398_RS15410 PF07670 Nucleoside recognition HQ398_RS15435 PF02660 Glycerol-3-phosphate acyltransferase HQ398_RS15440 PF02152 Dihydroneopterin aldolase HQ398_RS15445 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ398_RS15455 PF07690 Major Facilitator Superfamily HQ398_RS15460 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ398_RS15460 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ398_RS15470 PF12792 CSS motif domain associated with EAL HQ398_RS15470 PF00563 EAL domain HQ398_RS15475 PF00330 Aconitase family (aconitate hydratase) HQ398_RS15475 PF06434 Aconitate hydratase 2 N-terminus HQ398_RS15475 PF11791 Aconitate B N-terminal domain HQ398_RS15480 PF01734 Patatin-like phospholipase HQ398_RS15485 PF12729 Four helix bundle sensory module for signal transduction HQ398_RS15485 PF00672 HAMP domain HQ398_RS15485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS15495 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS15495 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_RS15500 PF02817 e3 binding domain HQ398_RS15500 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ398_RS15500 PF00364 Biotin-requiring enzyme HQ398_RS15505 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ398_RS15505 PF00456 Transketolase, thiamine diphosphate binding domain HQ398_RS15510 PF07729 FCD domain HQ398_RS15510 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS15515 PF01510 N-acetylmuramoyl-L-alanine amidase HQ398_RS15525 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ398_RS15525 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ398_RS15530 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS15535 PF00437 Type II/IV secretion system protein HQ398_RS15535 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ398_RS15540 PF00482 Type II secretion system (T2SS), protein F HQ398_RS15550 PF01121 Dephospho-CoA kinase HQ398_RS15555 PF07072 Cell division protein HQ398_RS15560 PF03884 DNA gyrase inhibitor YacG HQ398_RS15565 PF00293 NUDIX domain HQ398_RS15570 PF01043 SecA preprotein cross-linking domain HQ398_RS15570 PF07517 SecA DEAD-like domain HQ398_RS15570 PF07516 SecA Wing and Scaffold domain HQ398_RS15570 PF02810 SEC-C motif HQ398_RS15580 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ398_RS15585 PF00091 Tubulin/FtsZ family, GTPase domain HQ398_RS15585 PF12327 FtsZ family, C-terminal domain HQ398_RS15590 PF02491 SHS2 domain inserted in FTSA HQ398_RS15595 PF03799 Cell division protein FtsQ HQ398_RS15595 PF08478 POTRA domain, FtsQ-type HQ398_RS15600 PF08245 Mur ligase middle domain HQ398_RS15600 PF02875 Mur ligase family, glutamate ligase domain HQ398_RS15600 PF01225 Mur ligase family, catalytic domain HQ398_RS15610 PF01098 Cell cycle protein HQ398_RS15615 PF02875 Mur ligase family, glutamate ligase domain HQ398_RS15615 PF08245 Mur ligase middle domain HQ398_RS15620 PF00953 Glycosyl transferase family 4 HQ398_RS15620 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ398_RS15625 PF08245 Mur ligase middle domain HQ398_RS15625 PF01225 Mur ligase family, catalytic domain HQ398_RS15625 PF02875 Mur ligase family, glutamate ligase domain HQ398_RS15630 PF01225 Mur ligase family, catalytic domain HQ398_RS15630 PF02875 Mur ligase family, glutamate ligase domain HQ398_RS15630 PF08245 Mur ligase middle domain HQ398_RS15635 PF03717 Penicillin-binding Protein dimerisation domain HQ398_RS15635 PF00905 Penicillin binding protein transpeptidase domain HQ398_RS15640 PF04999 Cell division protein FtsL HQ398_RS15645 PF01795 MraW methylase family HQ398_RS15650 PF02381 MraZ protein, putative antitoxin-like HQ398_RS15660 PF01464 Transglycosylase SLT domain HQ398_RS15660 PF01476 LysM domain HQ398_RS15675 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS15680 PF04542 Sigma-70 region 2 HQ398_RS15680 PF04545 Sigma-70, region 4 HQ398_RS15700 PF02561 Flagellar protein FliS HQ398_RS15705 PF02465 Flagellar hook-associated protein 2 N-terminus HQ398_RS15705 PF07196 Flagellin hook IN motif HQ398_RS15705 PF07195 Flagellar hook-associated protein 2 C-terminus HQ398_RS15710 PF00700 Bacterial flagellin C-terminal helical region HQ398_RS15710 PF00669 Bacterial flagellin N-terminal helical region HQ398_RS15715 PF00700 Bacterial flagellin C-terminal helical region HQ398_RS15715 PF00669 Bacterial flagellin N-terminal helical region HQ398_RS15730 PF00669 Bacterial flagellin N-terminal helical region HQ398_RS15735 PF00460 Flagella basal body rod protein HQ398_RS15735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS15745 PF02119 Flagellar P-ring protein HQ398_RS15750 PF02107 Flagellar L-ring protein HQ398_RS15755 PF00460 Flagella basal body rod protein HQ398_RS15755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS15760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS15760 PF00460 Flagella basal body rod protein HQ398_RS15765 PF00460 Flagella basal body rod protein HQ398_RS15765 PF07559 Flagellar basal body protein FlaE HQ398_RS15765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS15770 PF03963 Flagellar hook capping protein - N-terminal region HQ398_RS15770 PF13860 FlgD Ig-like domain HQ398_RS15770 PF13861 FlgD Tudor-like domain HQ398_RS15775 PF00460 Flagella basal body rod protein HQ398_RS15775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_RS15780 PF00460 Flagella basal body rod protein HQ398_RS15790 PF04316 Anti-sigma-28 factor, FlgM HQ398_RS15815 PF14842 FliG N-terminal domain HQ398_RS15815 PF14841 FliG middle domain HQ398_RS15815 PF01706 FliG C-terminal domain HQ398_RS15820 PF08345 Flagellar M-ring protein C-terminal HQ398_RS15820 PF01514 Secretory protein of YscJ/FliF family HQ398_RS15825 PF02049 Flagellar hook-basal body complex protein FliE HQ398_RS15835 PF00771 FHIPEP family HQ398_RS15840 PF01312 FlhB HrpN YscU SpaS Family HQ398_RS15845 PF01311 Bacterial export proteins, family 1 HQ398_RS15850 PF01313 Bacterial export proteins, family 3 HQ398_RS15855 PF00813 FliP family HQ398_RS15860 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_RS15875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_RS15880 PF04348 LppC putative lipoprotein HQ398_RS15885 PF02021 Uncharacterised protein family UPF0102 HQ398_RS15890 PF13580 SIS domain HQ398_RS15900 PF04386 Stringent starvation protein B HQ398_RS15905 PF02798 Glutathione S-transferase, N-terminal domain HQ398_RS15905 PF00043 Glutathione S-transferase, C-terminal domain HQ398_RS15910 PF02167 Cytochrome C1 family HQ398_RS15915 PF00033 Cytochrome b/b6/petB HQ398_RS15915 PF00032 Cytochrome b(C-terminal)/b6/petD HQ398_RS15925 PF00380 Ribosomal protein S9/S16 HQ398_RS15930 PF00572 Ribosomal protein L13 HQ398_RS15935 PF03969 AFG1-like ATPase HQ398_RS15945 PF00595 PDZ domain HQ398_RS15945 PF13180 PDZ domain HQ398_RS15950 PF13180 PDZ domain HQ398_RS15980 PF01979 Amidohydrolase family HQ398_RS15985 PF03841 L-seryl-tRNA selenium transferase HQ398_RS15990 PF07071 KDGP aldolase HQ398_RS15995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_RS15995 PF00874 PRD domain HQ398_RS15995 PF05043 Mga helix-turn-helix domain HQ398_RS15995 PF08279 HTH domain HQ398_RS16000 PF00381 PTS HPr component phosphorylation site HQ398_RS16005 PF03668 P-loop ATPase protein family HQ398_RS16010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_RS16015 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ398_RS16020 PF04963 Sigma-54 factor, core binding domain HQ398_RS16020 PF04552 Sigma-54, DNA binding domain HQ398_RS16020 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ398_RS16025 PF00005 ABC transporter HQ398_RS16025 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ398_RS16030 PF03968 OstA-like protein HQ398_RS16045 PF00571 CBS domain HQ398_RS16045 PF01380 SIS domain HQ398_RS16050 PF00005 ABC transporter HQ398_RS16055 PF02405 Permease MlaE HQ398_RS16060 PF02470 MlaD protein HQ398_RS16065 PF05494 MlaC protein HQ398_RS16075 PF01722 BolA-like protein HQ398_RS16080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ398_RS16085 PF01523 Putative modulator of DNA gyrase HQ398_RS16090 PF04751 Protein of unknown function (DUF615) HQ398_RS16095 PF07722 Peptidase C26 HQ398_RS16105 PF07885 Ion channel HQ398_RS16105 PF00027 Cyclic nucleotide-binding domain HQ398_RS16110 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS16115 PF02899 Phage integrase, N-terminal SAM-like domain HQ398_RS16115 PF00589 Phage integrase family HQ398_RS16125 PF01678 Diaminopimelate epimerase HQ398_RS16130 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ398_RS16130 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ398_RS16140 PF01491 Frataxin-like domain HQ398_RS16145 PF02230 Phospholipase/Carboxylesterase HQ398_RS16150 PF12633 Adenylate cyclase NT domain HQ398_RS16150 PF01295 Adenylate cyclase, class-I HQ398_RS16155 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ398_RS16155 PF03900 Porphobilinogen deaminase, C-terminal domain HQ398_RS16160 PF02602 Uroporphyrinogen-III synthase HemD HQ398_RS16165 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ398_RS16175 PF03692 Putative zinc- or iron-chelating domain HQ398_RS16180 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ398_RS16200 PF13520 Amino acid permease HQ398_RS16205 PF00768 D-alanyl-D-alanine carboxypeptidase HQ398_RS16215 PF07715 TonB-dependent Receptor Plug Domain HQ398_RS16215 PF00593 TonB dependent receptor HQ398_RS16235 PF01381 Helix-turn-helix HQ398_RS16235 PF00717 Peptidase S24-like HQ398_RS16245 PF06892 Phage regulatory protein CII (CP76) HQ398_RS16430 PF07484 Phage Tail Collar Domain HQ398_RS16435 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HQ398_RS16470 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ398_RS16475 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ398_RS16475 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_RS16480 PF04364 DNA polymerase III chi subunit, HolC HQ398_RS16485 PF08264 Anticodon-binding domain of tRNA HQ398_RS16485 PF00133 tRNA synthetases class I (I, L, M and V) HQ398_RS16485 PF10458 Valyl tRNA synthetase tRNA binding arm HQ398_RS16505 PF00583 Acetyltransferase (GNAT) family HQ398_RS16525 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS16530 PF00579 tRNA synthetases class I (W and Y) HQ398_RS16530 PF01479 S4 domain HQ398_RS16535 PF00561 alpha/beta hydrolase fold HQ398_RS16540 PF03280 Proteobacterial lipase chaperone protein HQ398_RS16555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_RS16555 PF12793 Sugar transport-related sRNA regulator N-term HQ398_RS16565 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ398_RS16585 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS16595 PF00005 ABC transporter HQ398_RS16595 PF08402 TOBE domain HQ398_RS16605 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS16620 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS16620 PF07702 UTRA domain HQ398_RS16630 PF03606 C4-dicarboxylate anaerobic carrier HQ398_RS16645 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS16660 PF13361 UvrD-like helicase C-terminal domain HQ398_RS16660 PF00580 UvrD/REP helicase N-terminal domain HQ398_RS16660 PF12705 PD-(D/E)XK nuclease superfamily HQ398_RS16670 PF07681 DoxX HQ398_RS16675 PF02678 Pirin HQ398_RS16675 PF17954 Quercetinase C-terminal cupin domain HQ398_RS16685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS16685 PF03466 LysR substrate binding domain HQ398_RS16695 PF00072 Response regulator receiver domain HQ398_RS16695 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS16700 PF00672 HAMP domain HQ398_RS16700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS16700 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS16710 PF07715 TonB-dependent Receptor Plug Domain HQ398_RS16710 PF00593 TonB dependent receptor HQ398_RS16750 PF01196 Ribosomal protein L17 HQ398_RS16755 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ398_RS16755 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ398_RS16755 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ398_RS16760 PF01479 S4 domain HQ398_RS16760 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ398_RS16765 PF00411 Ribosomal protein S11 HQ398_RS16770 PF00416 Ribosomal protein S13/S18 HQ398_RS16775 PF00444 Ribosomal protein L36 HQ398_RS16780 PF00344 SecY translocase HQ398_RS16785 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ398_RS16790 PF00327 Ribosomal protein L30p/L7e HQ398_RS16795 PF00333 Ribosomal protein S5, N-terminal domain HQ398_RS16795 PF03719 Ribosomal protein S5, C-terminal domain HQ398_RS16800 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ398_RS16805 PF00347 Ribosomal protein L6 HQ398_RS16810 PF00410 Ribosomal protein S8 HQ398_RS16815 PF00253 Ribosomal protein S14p/S29e HQ398_RS16820 PF00281 Ribosomal protein L5 HQ398_RS16820 PF00673 ribosomal L5P family C-terminus HQ398_RS16825 PF00467 KOW motif HQ398_RS16825 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ398_RS16830 PF00238 Ribosomal protein L14p/L23e HQ398_RS16835 PF00366 Ribosomal protein S17 HQ398_RS16840 PF00831 Ribosomal L29 protein HQ398_RS16845 PF00252 Ribosomal protein L16p/L10e HQ398_RS16850 PF07650 KH domain HQ398_RS16850 PF00189 Ribosomal protein S3, C-terminal domain HQ398_RS16855 PF00237 Ribosomal protein L22p/L17e HQ398_RS16860 PF00203 Ribosomal protein S19 HQ398_RS16865 PF00181 Ribosomal Proteins L2, RNA binding domain HQ398_RS16865 PF03947 Ribosomal Proteins L2, C-terminal domain HQ398_RS16870 PF00276 Ribosomal protein L23 HQ398_RS16875 PF00573 Ribosomal protein L4/L1 family HQ398_RS16880 PF00297 Ribosomal protein L3 HQ398_RS16885 PF00338 Ribosomal protein S10p/S20e HQ398_RS16895 PF00672 HAMP domain HQ398_RS16895 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS16895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS16900 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS16900 PF00072 Response regulator receiver domain HQ398_RS16905 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ398_RS16905 PF03449 Transcription elongation factor, N-terminal HQ398_RS16910 PF16921 Tex protein YqgF-like domain HQ398_RS16910 PF09371 Tex-like protein N-terminal domain HQ398_RS16910 PF00575 S1 RNA binding domain HQ398_RS16910 PF17674 HHH domain HQ398_RS16930 PF00561 alpha/beta hydrolase fold HQ398_RS16935 PF00156 Phosphoribosyl transferase domain HQ398_RS16940 PF01106 NifU-like domain HQ398_RS16940 PF01521 Iron-sulphur cluster biosynthesis HQ398_RS16950 PF02556 Preprotein translocase subunit SecB HQ398_RS16955 PF00581 Rhodanese-like domain HQ398_RS16960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ398_RS16960 PF01676 Metalloenzyme superfamily HQ398_RS16965 PF01551 Peptidase family M23 HQ398_RS16990 PF01081 KDPG and KHG aldolase HQ398_RS16995 PF00920 Dehydratase family HQ398_RS17000 PF01202 Shikimate kinase HQ398_RS17005 PF02447 GntP family permease HQ398_RS17010 PF13091 PLD-like domain HQ398_RS17015 PF00270 DEAD/DEAH box helicase HQ398_RS17015 PF00271 Helicase conserved C-terminal domain HQ398_RS17015 PF17191 RecG wedge domain HQ398_RS17025 PF00583 Acetyltransferase (GNAT) family HQ398_RS17025 PF09500 Putative thioesterase (yiiD_Cterm) HQ398_RS17030 PF17284 Spermidine synthase tetramerisation domain HQ398_RS17035 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ398_RS17050 PF01609 Transposase DDE domain HQ398_RS17055 PF01609 Transposase DDE domain HQ398_RS17065 PF03631 Virulence factor BrkB HQ398_RS17075 PF03222 Tryptophan/tyrosine permease family HQ398_RS17080 PF11066 Protein of unknown function (DUF2867) HQ398_RS17080 PF13460 NAD(P)H-binding HQ398_RS17090 PF00270 DEAD/DEAH box helicase HQ398_RS17090 PF00271 Helicase conserved C-terminal domain HQ398_RS17090 PF17764 3′ DNA-binding domain (3′BD) HQ398_RS17090 PF18074 Primosomal protein N C-terminal domain HQ398_RS17090 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ398_RS17095 PF01197 Ribosomal protein L31 HQ398_RS17100 PF06206 CpeT/CpcT family (DUF1001) HQ398_RS17105 PF00672 HAMP domain HQ398_RS17105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS17110 PF03737 Aldolase/RraA HQ398_RS17115 PF02592 Putative vitamin uptake transporter HQ398_RS17125 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ398_RS17130 PF00034 Cytochrome c HQ398_RS17135 PF00570 HRDC domain HQ398_RS17135 PF16124 RecQ zinc-binding HQ398_RS17135 PF09382 RQC domain HQ398_RS17135 PF00271 Helicase conserved C-terminal domain HQ398_RS17135 PF00270 DEAD/DEAH box helicase HQ398_RS17140 PF03061 Thioesterase superfamily HQ398_RS17155 PF03475 3-alpha domain HQ398_RS17155 PF03473 MOSC domain HQ398_RS17160 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS17165 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS17170 PF00005 ABC transporter HQ398_RS17170 PF08402 TOBE domain HQ398_RS17175 PF13416 Bacterial extracellular solute-binding protein HQ398_RS17180 PF13416 Bacterial extracellular solute-binding protein HQ398_RS17185 PF00202 Aminotransferase class-III HQ398_RS17190 PF00120 Glutamine synthetase, catalytic domain HQ398_RS17195 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ398_RS17210 PF05981 CreA protein HQ398_RS17215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_RS17215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_RS17220 PF00012 Hsp70 protein HQ398_RS17235 PF02903 Alpha amylase, N-terminal ig-like domain HQ398_RS17235 PF00128 Alpha amylase, catalytic domain HQ398_RS17250 PF05958 tRNA (Uracil-5-)-methyltransferase HQ398_RS17255 PF02743 Cache domain HQ398_RS17255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS17255 PF00672 HAMP domain HQ398_RS17260 PF02653 Branched-chain amino acid transport system / permease component HQ398_RS17265 PF00005 ABC transporter HQ398_RS17270 PF13407 Periplasmic binding protein domain HQ398_RS17275 PF16353 Domain of unknown function(DUF4981) HQ398_RS17275 PF00703 Glycosyl hydrolases family 2 HQ398_RS17275 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ398_RS17275 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ398_RS17275 PF02929 Beta galactosidase small chain HQ398_RS17280 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS17285 PF16363 GDP-mannose 4,6 dehydratase HQ398_RS17290 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ398_RS17290 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ398_RS17295 PF10509 Galactokinase galactose-binding signature HQ398_RS17295 PF08544 GHMP kinases C terminal HQ398_RS17295 PF00288 GHMP kinases N terminal domain HQ398_RS17300 PF01263 Aldose 1-epimerase HQ398_RS17305 PF02673 Bacitracin resistance protein BacA HQ398_RS17315 PF04542 Sigma-70 region 2 HQ398_RS17315 PF04545 Sigma-70, region 4 HQ398_RS17325 PF03485 Arginyl tRNA synthetase N terminal domain HQ398_RS17325 PF05746 DALR anticodon binding domain HQ398_RS17325 PF00750 tRNA synthetases class I (R) HQ398_RS17335 PF00227 Proteasome subunit HQ398_RS17340 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_RS17340 PF07724 AAA domain (Cdc48 subfamily) HQ398_RS17340 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_RS17350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS17370 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ398_RS17370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ398_RS17370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ398_RS17370 PF04324 BFD-like [2Fe-2S] binding domain HQ398_RS17370 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS17375 PF13806 Rieske-like [2Fe-2S] domain HQ398_RS17380 PF01226 Formate/nitrite transporter HQ398_RS17385 PF10414 Sirohaem synthase dimerisation region HQ398_RS17385 PF14824 Sirohaem biosynthesis protein central HQ398_RS17385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_RS17390 PF03543 Yersinia/Haemophilus virulence surface antigen HQ398_RS17395 PF05932 Tir chaperone protein (CesT) family HQ398_RS17400 PF00571 CBS domain HQ398_RS17400 PF01769 Divalent cation transporter HQ398_RS17400 PF03448 MgtE intracellular N domain HQ398_RS17405 PF02653 Branched-chain amino acid transport system / permease component HQ398_RS17410 PF02653 Branched-chain amino acid transport system / permease component HQ398_RS17415 PF00005 ABC transporter HQ398_RS17420 PF02608 ABC transporter substrate-binding protein PnrA-like HQ398_RS17425 PF00580 UvrD/REP helicase N-terminal domain HQ398_RS17425 PF13361 UvrD-like helicase C-terminal domain HQ398_RS17440 PF06114 IrrE N-terminal-like domain HQ398_RS17455 PF14001 YdfZ protein HQ398_RS17485 PF01810 LysE type translocator HQ398_RS17490 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HQ398_RS17490 PF12833 Helix-turn-helix domain HQ398_RS17510 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ398_RS17530 PF01370 NAD dependent epimerase/dehydratase family HQ398_RS17535 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS17535 PF08360 QacR-like protein, C-terminal region HQ398_RS17540 PF00155 Aminotransferase class I and II HQ398_RS17545 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_RS17545 PF00107 Zinc-binding dehydrogenase HQ398_RS17550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ398_RS17560 PF00580 UvrD/REP helicase N-terminal domain HQ398_RS17560 PF13361 UvrD-like helicase C-terminal domain HQ398_RS17565 PF00266 Aminotransferase class-V HQ398_RS17570 PF02657 Fe-S metabolism associated domain HQ398_RS17575 PF00899 ThiF family HQ398_RS17615 PF07715 TonB-dependent Receptor Plug Domain HQ398_RS17615 PF00593 TonB dependent receptor HQ398_RS17620 PF03466 LysR substrate binding domain HQ398_RS17620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS17635 PF00731 AIR carboxylase HQ398_RS17640 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HQ398_RS17640 PF02222 ATP-grasp domain HQ398_RS17645 PF07690 Major Facilitator Superfamily HQ398_RS17650 PF00072 Response regulator receiver domain HQ398_RS17650 PF04397 LytTr DNA-binding domain HQ398_RS17655 PF07694 5TMR of 5TMR-LYT HQ398_RS17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS17655 PF06580 Histidine kinase HQ398_RS17665 PF00210 Ferritin-like domain HQ398_RS17670 PF07055 Enoyl reductase FAD binding domain HQ398_RS17670 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ398_RS17670 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ398_RS17675 PF00582 Universal stress protein family HQ398_RS17680 PF00579 tRNA synthetases class I (W and Y) HQ398_RS17685 PF03466 LysR substrate binding domain HQ398_RS17685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS17705 PF00892 EamA-like transporter family HQ398_RS17720 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ398_RS17725 PF00625 Guanylate kinase HQ398_RS17730 PF01192 RNA polymerase Rpb6 HQ398_RS17735 PF13291 ACT domain HQ398_RS17735 PF04607 Region found in RelA / SpoT proteins HQ398_RS17735 PF02824 TGS domain HQ398_RS17740 PF12105 SpoU, rRNA methylase, C-terminal HQ398_RS17740 PF00588 SpoU rRNA Methylase family HQ398_RS17745 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS17790 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS17795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_RS17800 PF00873 AcrB/AcrD/AcrF family HQ398_RS17805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS17805 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS17805 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS17810 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS17810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_RS17815 PF03814 Potassium-transporting ATPase A subunit HQ398_RS17825 PF02669 K+-transporting ATPase, c chain HQ398_RS17830 PF02702 Osmosensitive K+ channel His kinase sensor domain HQ398_RS17830 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS17830 PF13493 Domain of unknown function (DUF4118) HQ398_RS17830 PF13492 GAF domain HQ398_RS17830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS17835 PF00072 Response regulator receiver domain HQ398_RS17835 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS17840 PF07690 Major Facilitator Superfamily HQ398_RS17850 PF00155 Aminotransferase class I and II HQ398_RS17855 PF00011 Hsp20/alpha crystallin family HQ398_RS17860 PF00011 Hsp20/alpha crystallin family HQ398_RS17865 PF12706 Beta-lactamase superfamily domain HQ398_RS17870 PF01965 DJ-1/PfpI family HQ398_RS17870 PF12833 Helix-turn-helix domain HQ398_RS17875 PF08279 HTH domain HQ398_RS17875 PF13280 WYL domain HQ398_RS17885 PF01751 Toprim domain HQ398_RS17885 PF00204 DNA gyrase B HQ398_RS17885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS17885 PF18053 DNA gyrase B subunit insert domain HQ398_RS17885 PF00986 DNA gyrase B subunit, carboxyl terminus HQ398_RS17895 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ398_RS17895 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ398_RS17895 PF02767 DNA polymerase III beta subunit, central domain HQ398_RS17900 PF08299 Bacterial dnaA protein helix-turn-helix HQ398_RS17900 PF11638 DnaA N-terminal domain HQ398_RS17900 PF00308 Bacterial dnaA protein HQ398_RS17905 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS17910 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS17915 PF00005 ABC transporter HQ398_RS17920 PF00468 Ribosomal protein L34 HQ398_RS17925 PF00825 Ribonuclease P HQ398_RS17930 PF01809 Putative membrane protein insertion efficiency factor HQ398_RS17935 PF02096 60Kd inner membrane protein HQ398_RS17935 PF14849 YidC periplasmic domain HQ398_RS17940 PF10396 GTP-binding protein TrmE N-terminus HQ398_RS17940 PF12631 MnmE helical domain HQ398_RS17940 PF01926 50S ribosome-binding GTPase HQ398_RS17945 PF00258 Flavodoxin HQ398_RS17950 PF13932 GidA associated domain HQ398_RS17950 PF01134 Glucose inhibited division protein A HQ398_RS17955 PF02527 rRNA small subunit methyltransferase G HQ398_RS17960 PF13614 AAA domain HQ398_RS17965 PF17762 HTH domain found in ParB protein HQ398_RS17965 PF02195 ParB-like nuclease domain HQ398_RS17975 PF00119 ATP synthase A chain HQ398_RS17980 PF00137 ATP synthase subunit C HQ398_RS17985 PF00430 ATP synthase B/B' CF(0) HQ398_RS17990 PF00213 ATP synthase delta (OSCP) subunit HQ398_RS17995 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ398_RS17995 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ398_RS17995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_RS18000 PF00231 ATP synthase HQ398_RS18005 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ398_RS18005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_RS18010 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ398_RS18010 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ398_RS18015 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS18015 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_RS18015 PF12804 MobA-like NTP transferase domain HQ398_RS18020 PF02397 Bacterial sugar transferase HQ398_RS18035 PF13614 AAA domain HQ398_RS18035 PF13807 G-rich domain on putative tyrosine kinase HQ398_RS18035 PF02706 Chain length determinant protein HQ398_RS18065 PF00534 Glycosyl transferases group 1 HQ398_RS18065 PF13439 Glycosyltransferase Family 4 HQ398_RS18080 PF06123 Inner membrane protein CreD HQ398_RS18090 PF00905 Penicillin binding protein transpeptidase domain HQ398_RS18100 PF00072 Response regulator receiver domain HQ398_RS18100 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS18105 PF00455 DeoR C terminal sensor domain HQ398_RS18105 PF08220 DeoR-like helix-turn-helix domain HQ398_RS18110 PF01380 SIS domain HQ398_RS18115 PF00196 Bacterial regulatory proteins, luxR family HQ398_RS18115 PF03472 Autoinducer binding domain HQ398_RS18125 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS18130 PF01618 MotA/TolQ/ExbB proton channel family HQ398_RS18135 PF02472 Biopolymer transport protein ExbD/TolR HQ398_RS18140 PF03544 Gram-negative bacterial TonB protein C-terminal HQ398_RS18175 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HQ398_RS18180 PF07969 Amidohydrolase family HQ398_RS18185 PF01209 ubiE/COQ5 methyltransferase family HQ398_RS18190 PF02036 SCP-2 sterol transfer family HQ398_RS18195 PF03109 ABC1 family HQ398_RS18200 PF02416 mttA/Hcf106 family HQ398_RS18205 PF02416 mttA/Hcf106 family HQ398_RS18210 PF00902 Sec-independent protein translocase protein (TatC) HQ398_RS18215 PF01026 TatD related DNase HQ398_RS18220 PF00490 Delta-aminolevulinic acid dehydratase HQ398_RS18230 PF01432 Peptidase family M3 HQ398_RS18235 PF00563 EAL domain HQ398_RS18235 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS18235 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS18240 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS18245 PF04445 Putative SAM-dependent methyltransferase HQ398_RS18255 PF02541 Ppx/GppA phosphatase family HQ398_RS18260 PF00270 DEAD/DEAH box helicase HQ398_RS18260 PF00271 Helicase conserved C-terminal domain HQ398_RS18265 PF00085 Thioredoxin HQ398_RS18270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_RS18270 PF07498 Rho termination factor, N-terminal domain HQ398_RS18270 PF07497 Rho termination factor, RNA-binding domain HQ398_RS18280 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ398_RS18295 PF04380 Membrane fusogenic activity HQ398_RS18300 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HQ398_RS18300 PF01694 Rhomboid family HQ398_RS18305 PF00581 Rhodanese-like domain HQ398_RS18310 PF00005 ABC transporter HQ398_RS18315 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ398_RS18315 PF00005 ABC transporter HQ398_RS18320 PF11862 Domain of unknown function (DUF3382) HQ398_RS18320 PF02653 Branched-chain amino acid transport system / permease component HQ398_RS18325 PF02653 Branched-chain amino acid transport system / permease component HQ398_RS18330 PF13458 Periplasmic binding protein HQ398_RS18335 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS18345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS18345 PF00672 HAMP domain HQ398_RS18345 PF02743 Cache domain HQ398_RS18350 PF01590 GAF domain HQ398_RS18350 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS18350 PF00360 Phytochrome region HQ398_RS18350 PF00563 EAL domain HQ398_RS18360 PF05746 DALR anticodon binding domain HQ398_RS18360 PF02092 Glycyl-tRNA synthetase beta subunit HQ398_RS18365 PF02091 Glycyl-tRNA synthetase alpha subunit HQ398_RS18370 PF03352 Methyladenine glycosylase HQ398_RS18375 PF17200 Single Cache domain 2 HQ398_RS18375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS18375 PF00672 HAMP domain HQ398_RS18380 PF00691 OmpA family HQ398_RS18380 PF13488 Glycine zipper HQ398_RS18385 PF01042 Endoribonuclease L-PSP HQ398_RS18390 PF01206 Sulfurtransferase TusA HQ398_RS18400 PF01547 Bacterial extracellular solute-binding protein HQ398_RS18405 PF00672 HAMP domain HQ398_RS18405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS18405 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS18410 PF00072 Response regulator receiver domain HQ398_RS18410 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS18415 PF02803 Thiolase, C-terminal domain HQ398_RS18415 PF00108 Thiolase, N-terminal domain HQ398_RS18420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ398_RS18420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ398_RS18420 PF00378 Enoyl-CoA hydratase/isomerase HQ398_RS18425 PF13193 AMP-binding enzyme C-terminal domain HQ398_RS18425 PF00501 AMP-binding enzyme HQ398_RS18430 PF00557 Metallopeptidase family M24 HQ398_RS18435 PF09186 Domain of unknown function (DUF1949) HQ398_RS18435 PF01205 Uncharacterized protein family UPF0029 HQ398_RS18440 PF02386 Cation transport protein HQ398_RS18445 PF12724 Flavodoxin domain HQ398_RS18475 PF00583 Acetyltransferase (GNAT) family HQ398_RS18475 PF13380 CoA binding domain HQ398_RS18475 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ398_RS18490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS18490 PF03466 LysR substrate binding domain HQ398_RS18495 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ398_RS18495 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ398_RS18500 PF00342 Phosphoglucose isomerase HQ398_RS18505 PF00924 Mechanosensitive ion channel HQ398_RS18505 PF05552 Conserved TM helix HQ398_RS18510 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS18515 PF00692 dUTPase HQ398_RS18520 PF04127 DNA / pantothenate metabolism flavoprotein HQ398_RS18520 PF02441 Flavoprotein HQ398_RS18525 PF04002 RadC-like JAB domain HQ398_RS18530 PF00830 Ribosomal L28 family HQ398_RS18535 PF00471 Ribosomal protein L33 HQ398_RS18545 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ398_RS18545 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ398_RS18545 PF06827 Zinc finger found in FPG and IleRS HQ398_RS18550 PF04393 Protein of unknown function (DUF535) HQ398_RS18555 PF01467 Cytidylyltransferase-like HQ398_RS18560 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ398_RS18565 PF00535 Glycosyl transferase family 2 HQ398_RS18570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ398_RS18575 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HQ398_RS18580 PF03611 PTS system sugar-specific permease component HQ398_RS18590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_RS18595 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS18595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ398_RS18600 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_RS18600 PF00107 Zinc-binding dehydrogenase HQ398_RS18615 PF03748 Flagellar basal body-associated protein FliL HQ398_RS18620 PF04345 Chorismate lyase HQ398_RS18625 PF01040 UbiA prenyltransferase family HQ398_RS18630 PF01553 Acyltransferase HQ398_RS18635 PF01726 LexA DNA binding domain HQ398_RS18635 PF00717 Peptidase S24-like HQ398_RS18645 PF02630 SCO1/SenC HQ398_RS18650 PF01554 MatE HQ398_RS18655 PF00588 SpoU rRNA Methylase family HQ398_RS18660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS18660 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ398_RS18660 PF00672 HAMP domain HQ398_RS18660 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS18665 PF00072 Response regulator receiver domain HQ398_RS18665 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS18670 PF01545 Cation efflux family HQ398_RS18670 PF16916 Dimerisation domain of Zinc Transporter HQ398_RS18675 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS18675 PF06426 Serine acetyltransferase, N-terminal HQ398_RS18685 PF06005 Cell division protein ZapB HQ398_RS18700 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS18735 PF00356 Bacterial regulatory proteins, lacI family HQ398_RS18740 PF02929 Beta galactosidase small chain HQ398_RS18740 PF16353 Domain of unknown function(DUF4981) HQ398_RS18740 PF00703 Glycosyl hydrolases family 2 HQ398_RS18740 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ398_RS18740 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ398_RS18745 PF04074 YhcH/YjgK/YiaL HQ398_RS18750 PF13520 Amino acid permease HQ398_RS18755 PF01588 Putative tRNA binding domain HQ398_RS18760 PF13520 Amino acid permease HQ398_RS18765 PF13593 SBF-like CPA transporter family (DUF4137) HQ398_RS18805 PF03466 LysR substrate binding domain HQ398_RS18805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS18810 PF00756 Putative esterase HQ398_RS18815 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_RS18815 PF00107 Zinc-binding dehydrogenase HQ398_RS18820 PF03466 LysR substrate binding domain HQ398_RS18820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS18825 PF03755 YicC-like family, N-terminal region HQ398_RS18825 PF08340 Domain of unknown function (DUF1732) HQ398_RS18830 PF01138 3' exoribonuclease family, domain 1 HQ398_RS18830 PF03725 3' exoribonuclease family, domain 2 HQ398_RS18835 PF00156 Phosphoribosyl transferase domain HQ398_RS18845 PF13411 MerR HTH family regulatory protein HQ398_RS18850 PF01590 GAF domain HQ398_RS18850 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS18850 PF00360 Phytochrome region HQ398_RS18850 PF00563 EAL domain HQ398_RS18855 PF06288 Protein of unknown function (DUF1040) HQ398_RS18860 PF13746 4Fe-4S dicluster domain HQ398_RS18860 PF12801 4Fe-4S binding domain HQ398_RS18860 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ398_RS18865 PF01636 Phosphotransferase enzyme family HQ398_RS18870 PF01323 DSBA-like thioredoxin domain HQ398_RS18875 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HQ398_RS18875 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HQ398_RS18880 PF00857 Isochorismatase family HQ398_RS18890 PF04463 Protein of unknown function (DUF523) HQ398_RS18895 PF01553 Acyltransferase HQ398_RS18900 PF01553 Acyltransferase HQ398_RS18905 PF01078 Magnesium chelatase, subunit ChlI HQ398_RS18905 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ398_RS18910 PF00205 Thiamine pyrophosphate enzyme, central domain HQ398_RS18910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ398_RS18910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_RS18920 PF01063 Amino-transferase class IV HQ398_RS18925 PF00920 Dehydratase family HQ398_RS18930 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS18930 PF00585 C-terminal regulatory domain of Threonine dehydratase HQ398_RS18935 PF07728 AAA domain (dynein-related subfamily) HQ398_RS18935 PF12102 Domain of unknown function (DUF3578) HQ398_RS18940 PF12102 Domain of unknown function (DUF3578) HQ398_RS18940 PF07728 AAA domain (dynein-related subfamily) HQ398_RS18965 PF00691 OmpA family HQ398_RS18965 PF01389 OmpA-like transmembrane domain HQ398_RS18975 PF00690 Cation transporter/ATPase, N-terminus HQ398_RS18975 PF00689 Cation transporting ATPase, C-terminus HQ398_RS18980 PF04143 Sulphur transport HQ398_RS18985 PF00892 EamA-like transporter family HQ398_RS18995 PF00171 Aldehyde dehydrogenase family HQ398_RS19010 PF00171 Aldehyde dehydrogenase family HQ398_RS19020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS19020 PF03466 LysR substrate binding domain HQ398_RS19030 PF02082 Transcriptional regulator HQ398_RS19045 PF02646 RmuC family HQ398_RS19055 PF00962 Adenosine/AMP deaminase HQ398_RS19065 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS19065 PF00989 PAS fold HQ398_RS19065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS19075 PF00120 Glutamine synthetase, catalytic domain HQ398_RS19075 PF03951 Glutamine synthetase, beta-Grasp domain HQ398_RS19080 PF03144 Elongation factor Tu domain 2 HQ398_RS19080 PF00009 Elongation factor Tu GTP binding domain HQ398_RS19080 PF00679 Elongation factor G C-terminus HQ398_RS19085 PF02386 Cation transport protein HQ398_RS19090 PF02080 TrkA-C domain HQ398_RS19090 PF02254 TrkA-N domain HQ398_RS19095 PF01189 16S rRNA methyltransferase RsmB/F HQ398_RS19095 PF01029 NusB family HQ398_RS19100 PF02911 Formyl transferase, C-terminal domain HQ398_RS19100 PF00551 Formyl transferase HQ398_RS19105 PF01327 Polypeptide deformylase HQ398_RS19110 PF01476 LysM domain HQ398_RS19115 PF17782 DprA winged helix domain HQ398_RS19115 PF02481 DNA recombination-mediator protein A HQ398_RS19120 PF04361 Protein of unknown function (DUF494) HQ398_RS19125 PF01396 Topoisomerase DNA binding C4 zinc finger HQ398_RS19130 PF00731 AIR carboxylase HQ398_RS19135 PF01300 Telomere recombination HQ398_RS19140 PF01218 Coproporphyrinogen III oxidase HQ398_RS19145 PF08501 Shikimate dehydrogenase substrate binding domain HQ398_RS19145 PF01488 Shikimate / quinate 5-dehydrogenase HQ398_RS19145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HQ398_RS19150 PF07369 Protein of unknown function (DUF1488) HQ398_RS19155 PF01926 50S ribosome-binding GTPase HQ398_RS19160 PF00034 Cytochrome c HQ398_RS19165 PF04220 Der GTPase activator (YihI) HQ398_RS19170 PF10675 Protein of unknown function (DUF2489) HQ398_RS19175 PF06969 HemN C-terminal domain HQ398_RS19175 PF04055 Radical SAM superfamily HQ398_RS19200 PF00696 Amino acid kinase family HQ398_RS19205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_RS19205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_RS19210 PF03606 C4-dicarboxylate anaerobic carrier HQ398_RS19215 PF02863 Arginine repressor, C-terminal domain HQ398_RS19215 PF01316 Arginine repressor, DNA binding domain HQ398_RS19220 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ398_RS19220 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ398_RS19225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_RS19225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_RS19240 PF02666 Phosphatidylserine decarboxylase HQ398_RS19245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS19245 PF03466 LysR substrate binding domain HQ398_RS19250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_RS19255 PF02743 Cache domain HQ398_RS19255 PF00672 HAMP domain HQ398_RS19255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS19265 PF01470 Pyroglutamyl peptidase HQ398_RS19280 PF08212 Lipocalin-like domain HQ398_RS19285 PF12833 Helix-turn-helix domain HQ398_RS19285 PF06719 AraC-type transcriptional regulator N-terminus HQ398_RS19290 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS19295 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ398_RS19295 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ398_RS19295 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ398_RS19300 PF02233 NAD(P) transhydrogenase beta subunit HQ398_RS19310 PF03313 Serine dehydratase alpha chain HQ398_RS19315 PF00375 Sodium:dicarboxylate symporter family HQ398_RS19320 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_RS19320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_RS19325 PF00893 Small Multidrug Resistance protein HQ398_RS19330 PF00892 EamA-like transporter family HQ398_RS19335 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HQ398_RS19340 PF01522 Polysaccharide deacetylase HQ398_RS19350 PF00535 Glycosyl transferase family 2 HQ398_RS19355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ398_RS19360 PF01609 Transposase DDE domain HQ398_RS19365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ398_RS19365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ398_RS19365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ398_RS19380 PF13525 Outer membrane lipoprotein HQ398_RS19385 PF01479 S4 domain HQ398_RS19385 PF00849 RNA pseudouridylate synthase HQ398_RS19390 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ398_RS19395 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_RS19395 PF07724 AAA domain (Cdc48 subfamily) HQ398_RS19395 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_RS19395 PF02861 Clp amino terminal domain, pathogenicity island component HQ398_RS19395 PF17871 AAA lid domain HQ398_RS19400 PF03590 Aspartate-ammonia ligase HQ398_RS19405 PF01037 Lrp/AsnC ligand binding domain HQ398_RS19415 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ398_RS19435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS19435 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS19445 PF00072 Response regulator receiver domain HQ398_RS19445 PF00158 Sigma-54 interaction domain HQ398_RS19450 PF06496 Protein of unknown function (DUF1097) HQ398_RS19455 PF00174 Oxidoreductase molybdopterin binding domain HQ398_RS19460 PF01794 Ferric reductase like transmembrane component HQ398_RS19475 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS19475 PF00072 Response regulator receiver domain HQ398_RS19480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS19490 PF00384 Molybdopterin oxidoreductase HQ398_RS19490 PF18364 Molybdopterin oxidoreductase N-terminal domain HQ398_RS19490 PF01568 Molydopterin dinucleotide binding domain HQ398_RS19495 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ398_RS19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS19500 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS19500 PF00512 His Kinase A (phospho-acceptor) domain HQ398_RS19510 PF01131 DNA topoisomerase HQ398_RS19510 PF01751 Toprim domain HQ398_RS19515 PF02386 Cation transport protein HQ398_RS19520 PF02254 TrkA-N domain HQ398_RS19520 PF02080 TrkA-C domain HQ398_RS19525 PF01565 FAD binding domain HQ398_RS19525 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ398_RS19530 PF08279 HTH domain HQ398_RS19530 PF02237 Biotin protein ligase C terminal domain HQ398_RS19530 PF03099 Biotin/lipoate A/B protein ligase family HQ398_RS19535 PF00485 Phosphoribulokinase / Uridine kinase family HQ398_RS19550 PF03144 Elongation factor Tu domain 2 HQ398_RS19550 PF03143 Elongation factor Tu C-terminal domain HQ398_RS19550 PF00009 Elongation factor Tu GTP binding domain HQ398_RS19560 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ398_RS19565 PF00467 KOW motif HQ398_RS19565 PF02357 Transcription termination factor nusG HQ398_RS19570 PF00298 Ribosomal protein L11, RNA binding domain HQ398_RS19570 PF03946 Ribosomal protein L11, N-terminal domain HQ398_RS19575 PF00687 Ribosomal protein L1p/L10e family HQ398_RS19580 PF00466 Ribosomal protein L10 HQ398_RS19585 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ398_RS19585 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ398_RS19590 PF04565 RNA polymerase Rpb2, domain 3 HQ398_RS19590 PF10385 RNA polymerase beta subunit external 1 domain HQ398_RS19590 PF00562 RNA polymerase Rpb2, domain 6 HQ398_RS19590 PF04560 RNA polymerase Rpb2, domain 7 HQ398_RS19590 PF04563 RNA polymerase beta subunit HQ398_RS19590 PF04561 RNA polymerase Rpb2, domain 2 HQ398_RS19595 PF04997 RNA polymerase Rpb1, domain 1 HQ398_RS19595 PF00623 RNA polymerase Rpb1, domain 2 HQ398_RS19595 PF04983 RNA polymerase Rpb1, domain 3 HQ398_RS19595 PF04998 RNA polymerase Rpb1, domain 5 HQ398_RS19595 PF05000 RNA polymerase Rpb1, domain 4 HQ398_RS19600 PF08348 YheO-like PAS domain HQ398_RS19600 PF13309 HTH domain HQ398_RS19605 PF01042 Endoribonuclease L-PSP HQ398_RS19610 PF02635 DsrE/DsrF-like family HQ398_RS19615 PF02635 DsrE/DsrF-like family HQ398_RS19620 PF04077 DsrH like protein HQ398_RS19625 PF00164 Ribosomal protein S12/S23 HQ398_RS19630 PF00177 Ribosomal protein S7p/S5e HQ398_RS19635 PF00679 Elongation factor G C-terminus HQ398_RS19635 PF14492 Elongation Factor G, domain II HQ398_RS19635 PF03764 Elongation factor G, domain IV HQ398_RS19635 PF00009 Elongation factor Tu GTP binding domain HQ398_RS19635 PF03144 Elongation factor Tu domain 2 HQ398_RS19640 PF03144 Elongation factor Tu domain 2 HQ398_RS19640 PF00009 Elongation factor Tu GTP binding domain HQ398_RS19640 PF03143 Elongation factor Tu C-terminal domain HQ398_RS19685 PF00440 Bacterial regulatory proteins, tetR family HQ398_RS19705 PF07690 Major Facilitator Superfamily HQ398_RS19715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS19715 PF03466 LysR substrate binding domain HQ398_RS19725 PF00375 Sodium:dicarboxylate symporter family HQ398_RS19730 PF10678 Protein of unknown function (DUF2492) HQ398_RS19735 PF01914 MarC family integral membrane protein HQ398_RS19740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS19740 PF03466 LysR substrate binding domain HQ398_RS19745 PF02416 mttA/Hcf106 family HQ398_RS19765 PF13091 PLD-like domain HQ398_RS19780 PF00326 Prolyl oligopeptidase family HQ398_RS19780 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ398_RS19795 PF00106 short chain dehydrogenase HQ398_RS19800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS19800 PF03466 LysR substrate binding domain HQ398_RS19805 PF02525 Flavodoxin-like fold HQ398_RS19810 PF00999 Sodium/hydrogen exchanger family HQ398_RS19810 PF02254 TrkA-N domain HQ398_RS19835 PF02881 SRP54-type protein, helical bundle domain HQ398_RS19835 PF00448 SRP54-type protein, GTPase domain HQ398_RS19840 PF00005 ABC transporter HQ398_RS19845 PF18075 FtsX extracellular domain HQ398_RS19850 PF00140 Sigma-70 factor, region 1.2 HQ398_RS19850 PF04542 Sigma-70 region 2 HQ398_RS19850 PF04545 Sigma-70, region 4 HQ398_RS19855 PF00484 Carbonic anhydrase HQ398_RS19860 PF07702 UTRA domain HQ398_RS19860 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS19865 PF01979 Amidohydrolase family HQ398_RS19870 PF00491 Arginase family HQ398_RS19875 PF17392 Urocanase C-terminal domain HQ398_RS19875 PF17391 Urocanase N-terminal domain HQ398_RS19875 PF01175 Urocanase Rossmann-like domain HQ398_RS19880 PF00221 Aromatic amino acid lyase HQ398_RS19885 PF01699 Sodium/calcium exchanger protein HQ398_RS19895 PF00563 EAL domain HQ398_RS19895 PF12792 CSS motif domain associated with EAL HQ398_RS19900 PF17157 Gammaproteobacterial periplasmic sensor domain HQ398_RS19900 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS19900 PF00563 EAL domain HQ398_RS19930 PF00263 Bacterial type II and III secretion system protein HQ398_RS19930 PF03958 Bacterial type II/III secretion system short domain HQ398_RS19945 PF00437 Type II/IV secretion system protein HQ398_RS19945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ398_RS19950 PF00482 Type II secretion system (T2SS), protein F HQ398_RS19965 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS19970 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS19970 PF00114 Pilin (bacterial filament) HQ398_RS20000 PF04085 rod shape-determining protein MreC HQ398_RS20005 PF04093 rod shape-determining protein MreD HQ398_RS20010 PF02545 Maf-like protein HQ398_RS20015 PF10150 Ribonuclease E/G family HQ398_RS20015 PF00575 S1 RNA binding domain HQ398_RS20020 PF13116 Protein of unknown function HQ398_RS20020 PF13502 AsmA-like C-terminal region HQ398_RS20030 PF00795 Carbon-nitrogen hydrolase HQ398_RS20035 PF01523 Putative modulator of DNA gyrase HQ398_RS20045 PF01914 MarC family integral membrane protein HQ398_RS20050 PF07690 Major Facilitator Superfamily HQ398_RS20060 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ398_RS20085 PF00999 Sodium/hydrogen exchanger family HQ398_RS20090 PF02310 B12 binding domain HQ398_RS20090 PF02607 B12 binding domain HQ398_RS20090 PF00809 Pterin binding enzyme HQ398_RS20090 PF02574 Homocysteine S-methyltransferase HQ398_RS20090 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ398_RS20095 PF18030 RimK PreATP-grasp domain HQ398_RS20095 PF08443 RimK-like ATP-grasp domain HQ398_RS20100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_RS20105 PF00486 Transcriptional regulatory protein, C terminal HQ398_RS20105 PF00072 Response regulator receiver domain HQ398_RS20120 PF13411 MerR HTH family regulatory protein HQ398_RS20125 PF01964 Radical SAM ThiC family HQ398_RS20125 PF13667 ThiC-associated domain HQ398_RS20130 PF02581 Thiamine monophosphate synthase HQ398_RS20135 PF00899 ThiF family HQ398_RS20145 PF05690 Thiazole biosynthesis protein ThiG HQ398_RS20150 PF06968 Biotin and Thiamin Synthesis associated domain HQ398_RS20150 PF04055 Radical SAM superfamily HQ398_RS20175 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS20185 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS20195 PF06055 Exopolysaccharide synthesis, ExoD HQ398_RS20205 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS20210 PF00909 Ammonium Transporter Family HQ398_RS20215 PF05433 Glycine zipper 2TM domain HQ398_RS20220 PF00583 Acetyltransferase (GNAT) family HQ398_RS20230 PF11756 Nitrous oxide-stimulated promoter HQ398_RS20235 PF01321 Creatinase/Prolidase N-terminal domain HQ398_RS20235 PF00557 Metallopeptidase family M24 HQ398_RS20240 PF00392 Bacterial regulatory proteins, gntR family HQ398_RS20245 PF01293 Phosphoenolpyruvate carboxykinase HQ398_RS20250 PF01430 Hsp33 protein HQ398_RS20255 PF01479 S4 domain HQ398_RS20265 PF01569 PAP2 superfamily HQ398_RS20270 PF01594 AI-2E family transporter HQ398_RS20280 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ398_RS20285 PF02954 Bacterial regulatory protein, Fis family HQ398_RS20285 PF00989 PAS fold HQ398_RS20285 PF00158 Sigma-54 interaction domain HQ398_RS20290 PF00465 Iron-containing alcohol dehydrogenase HQ398_RS20295 PF05524 PEP-utilising enzyme, N-terminal HQ398_RS20295 PF00381 PTS HPr component phosphorylation site HQ398_RS20295 PF00391 PEP-utilising enzyme, mobile domain HQ398_RS20295 PF03610 PTS system fructose IIA component HQ398_RS20300 PF02734 DAK2 domain HQ398_RS20305 PF02733 Dak1 domain HQ398_RS20310 PF00860 Permease family HQ398_RS20315 PF00313 'Cold-shock' DNA-binding domain HQ398_RS20330 PF00436 Single-strand binding protein family HQ398_RS20335 PF00005 ABC transporter HQ398_RS20335 PF17755 UvrA DNA-binding domain HQ398_RS20335 PF17760 UvrA interaction domain HQ398_RS20340 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS20345 PF03922 OmpW family HQ398_RS20350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS20350 PF00672 HAMP domain HQ398_RS20365 PF02219 Methylenetetrahydrofolate reductase HQ398_RS20375 PF03594 Benzoate membrane transport protein HQ398_RS20380 PF01381 Helix-turn-helix HQ398_RS20380 PF07883 Cupin domain HQ398_RS20415 PF13380 CoA binding domain HQ398_RS20415 PF00583 Acetyltransferase (GNAT) family HQ398_RS20415 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ398_RS20440 PF00202 Aminotransferase class-III HQ398_RS20445 PF00654 Voltage gated chloride channel HQ398_RS20455 PF01521 Iron-sulphur cluster biosynthesis HQ398_RS20460 PF03553 Na+/H+ antiporter family HQ398_RS20500 PF08323 Starch synthase catalytic domain HQ398_RS20500 PF00534 Glycosyl transferases group 1 HQ398_RS20505 PF00483 Nucleotidyl transferase HQ398_RS20515 PF00701 Dihydrodipicolinate synthetase family HQ398_RS20520 PF01928 CYTH domain HQ398_RS20525 PF01865 Protein of unknown function DUF47 HQ398_RS20530 PF01384 Phosphate transporter family HQ398_RS20535 PF00696 Amino acid kinase family HQ398_RS20535 PF00742 Homoserine dehydrogenase HQ398_RS20535 PF03447 Homoserine dehydrogenase, NAD binding domain HQ398_RS20540 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ398_RS20545 PF01340 Met Apo-repressor, MetJ HQ398_RS20550 PF02311 AraC-like ligand binding domain HQ398_RS20550 PF12833 Helix-turn-helix domain HQ398_RS20555 PF01588 Putative tRNA binding domain HQ398_RS20560 PF03222 Tryptophan/tyrosine permease family HQ398_RS20565 PF00459 Inositol monophosphatase family HQ398_RS20570 PF00293 NUDIX domain HQ398_RS20575 PF13419 Haloacid dehalogenase-like hydrolase HQ398_RS20590 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_RS20590 PF12464 Maltose acetyltransferase HQ398_RS20610 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS20615 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS20620 PF00005 ABC transporter HQ398_RS20620 PF12857 TOBE-like domain HQ398_RS20625 PF03466 LysR substrate binding domain HQ398_RS20625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS20635 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS20640 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS20645 PF00005 ABC transporter HQ398_RS20650 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS20655 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ398_RS20655 PF18416 N-acetylglucosamine binding protein domain 2 HQ398_RS20660 PF17200 Single Cache domain 2 HQ398_RS20660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS20660 PF00672 HAMP domain HQ398_RS20675 PF01522 Polysaccharide deacetylase HQ398_RS20675 PF14883 Hypothetical glycosyl hydrolase family 13 HQ398_RS20680 PF00535 Glycosyl transferase family 2 HQ398_RS20710 PF11230 Protein of unknown function (DUF3029) HQ398_RS20715 PF04055 Radical SAM superfamily HQ398_RS20725 PF03466 LysR substrate binding domain HQ398_RS20725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS20730 PF00155 Aminotransferase class I and II HQ398_RS20735 PF11658 Cellulose biosynthesis protein BcsG HQ398_RS20745 PF06564 Cellulose biosynthesis protein BcsQ HQ398_RS20750 PF03552 Cellulose synthase HQ398_RS20750 PF00535 Glycosyl transferase family 2 HQ398_RS20750 PF07238 PilZ domain HQ398_RS20755 PF03170 Bacterial cellulose synthase subunit HQ398_RS20760 PF01270 Glycosyl hydrolases family 8 HQ398_RS20765 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HQ398_RS20770 PF02583 Metal-sensitive transcriptional repressor HQ398_RS20785 PF03714 Bacterial pullanase-associated domain HQ398_RS20785 PF11852 Domain of unknown function (DUF3372) HQ398_RS20785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_RS20785 PF18494 Pullulanase Ins domain HQ398_RS20785 PF17967 Pullulanase N2 domain HQ398_RS20790 PF00403 Heavy-metal-associated domain HQ398_RS20795 PF08534 Redoxin HQ398_RS20805 PF00270 DEAD/DEAH box helicase HQ398_RS20805 PF00271 Helicase conserved C-terminal domain HQ398_RS20815 PF03372 Endonuclease/Exonuclease/phosphatase family HQ398_RS20835 PF06062 Uncharacterised protein family (UPF0231) HQ398_RS20840 PF05651 Putative sugar diacid recognition HQ398_RS20840 PF17853 GGDEF-like domain HQ398_RS20840 PF13556 PucR C-terminal helix-turn-helix domain HQ398_RS20845 PF02447 GntP family permease HQ398_RS20850 PF02595 Glycerate kinase family HQ398_RS20860 PF00255 Glutathione peroxidase HQ398_RS20865 PF03466 LysR substrate binding domain HQ398_RS20865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS20870 PF07670 Nucleoside recognition HQ398_RS20870 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_RS20870 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_RS20880 PF02594 Uncharacterised ACR, YggU family COG1872 HQ398_RS20885 PF02325 YGGT family HQ398_RS20890 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ398_RS20890 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ398_RS20895 PF01168 Alanine racemase, N-terminal domain HQ398_RS20900 PF00437 Type II/IV secretion system protein HQ398_RS20910 PF03883 Peroxide stress protein YaaA HQ398_RS20920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ398_RS20920 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ398_RS20925 PF00472 RF-1 domain HQ398_RS20930 PF00543 Nitrogen regulatory protein P-II HQ398_RS20935 PF13416 Bacterial extracellular solute-binding protein HQ398_RS20945 PF00005 ABC transporter HQ398_RS20945 PF08402 TOBE domain HQ398_RS20950 PF04261 Dyp-type peroxidase family HQ398_RS20955 PF01316 Arginine repressor, DNA binding domain HQ398_RS20955 PF02863 Arginine repressor, C-terminal domain HQ398_RS20960 PF00005 ABC transporter HQ398_RS20965 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_RS20970 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS20975 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS20980 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ398_RS20980 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ398_RS20995 PF00970 Oxidoreductase FAD-binding domain HQ398_RS20995 PF00042 Globin HQ398_RS20995 PF00175 Oxidoreductase NAD-binding domain HQ398_RS21000 PF02082 Transcriptional regulator HQ398_RS21005 PF03471 Transporter associated domain HQ398_RS21005 PF01595 Cyclin M transmembrane N-terminal domain HQ398_RS21005 PF00571 CBS domain HQ398_RS21010 PF01578 Cytochrome C assembly protein HQ398_RS21015 PF00448 SRP54-type protein, GTPase domain HQ398_RS21015 PF02881 SRP54-type protein, helical bundle domain HQ398_RS21015 PF02978 Signal peptide binding domain HQ398_RS21020 PF00886 Ribosomal protein S16 HQ398_RS21025 PF05239 PRC-barrel domain HQ398_RS21025 PF01782 RimM N-terminal domain HQ398_RS21030 PF01746 tRNA (Guanine-1)-methyltransferase HQ398_RS21035 PF01245 Ribosomal protein L19 HQ398_RS21045 PF02976 DNA mismatch repair enzyme MutH HQ398_RS21050 PF00293 NUDIX domain HQ398_RS21060 PF01790 Prolipoprotein diacylglyceryl transferase HQ398_RS21065 PF00303 Thymidylate synthase HQ398_RS21070 PF06965 Na+/H+ antiporter 1 HQ398_RS21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS21080 PF03466 LysR substrate binding domain HQ398_RS21085 PF01022 Bacterial regulatory protein, arsR family HQ398_RS21090 PF01649 Ribosomal protein S20 HQ398_RS21100 PF01687 Riboflavin kinase HQ398_RS21100 PF06574 FAD synthetase HQ398_RS21110 PF01252 Signal peptidase (SPase) II HQ398_RS21115 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_RS21120 PF02401 LytB protein HQ398_RS21155 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS21160 PF00795 Carbon-nitrogen hydrolase HQ398_RS21160 PF02540 NAD synthase HQ398_RS21165 PF00543 Nitrogen regulatory protein P-II HQ398_RS21175 PF02664 S-Ribosylhomocysteinase (LuxS) HQ398_RS21185 PF07963 Prokaryotic N-terminal methylation motif HQ398_RS21190 PF01026 TatD related DNase HQ398_RS21195 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_RS21195 PF07670 Nucleoside recognition HQ398_RS21195 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_RS21205 PF01791 DeoC/LacD family aldolase HQ398_RS21210 PF02885 Glycosyl transferase family, helical bundle domain HQ398_RS21210 PF00591 Glycosyl transferase family, a/b domain HQ398_RS21210 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ398_RS21215 PF01676 Metalloenzyme superfamily HQ398_RS21220 PF01048 Phosphorylase superfamily HQ398_RS21245 PF18073 Rubredoxin metal binding domain HQ398_RS21250 PF07238 PilZ domain HQ398_RS21255 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ398_RS21260 PF00216 Bacterial DNA-binding protein HQ398_RS21275 PF01566 Natural resistance-associated macrophage protein HQ398_RS21280 PF01250 Ribosomal protein S6 HQ398_RS21285 PF01084 Ribosomal protein S18 HQ398_RS21290 PF03948 Ribosomal protein L9, C-terminal domain HQ398_RS21290 PF01281 Ribosomal protein L9, N-terminal domain HQ398_RS21295 PF00970 Oxidoreductase FAD-binding domain HQ398_RS21295 PF00175 Oxidoreductase NAD-binding domain HQ398_RS21315 PF14765 Polyketide synthase dehydratase HQ398_RS21315 PF00550 Phosphopantetheine attachment site HQ398_RS21315 PF00698 Acyl transferase domain HQ398_RS21315 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_RS21315 PF08659 KR domain HQ398_RS21320 PF09335 SNARE associated Golgi protein HQ398_RS21325 PF05193 Peptidase M16 inactive domain HQ398_RS21325 PF00675 Insulinase (Peptidase family M16) HQ398_RS21330 PF04262 Glutamate-cysteine ligase HQ398_RS21335 PF00501 AMP-binding enzyme HQ398_RS21340 PF13673 Acetyltransferase (GNAT) domain HQ398_RS21340 PF00583 Acetyltransferase (GNAT) family HQ398_RS21350 PF12592 Protein of unknown function (DUF3763) HQ398_RS21350 PF17868 AAA lid domain HQ398_RS21350 PF07728 AAA domain (dynein-related subfamily) HQ398_RS21355 PF05762 VWA domain containing CoxE-like protein HQ398_RS21360 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS21360 PF00072 Response regulator receiver domain HQ398_RS21365 PF03144 Elongation factor Tu domain 2 HQ398_RS21365 PF00009 Elongation factor Tu GTP binding domain HQ398_RS21365 PF16658 Class II release factor RF3, C-terminal domain HQ398_RS21370 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_RS21370 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_RS21370 PF12804 MobA-like NTP transferase domain HQ398_RS21375 PF00583 Acetyltransferase (GNAT) family HQ398_RS21380 PF07690 Major Facilitator Superfamily HQ398_RS21385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS21385 PF03466 LysR substrate binding domain HQ398_RS21395 PF13302 Acetyltransferase (GNAT) domain HQ398_RS21400 PF13302 Acetyltransferase (GNAT) domain HQ398_RS21410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ398_RS21410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ398_RS21415 PF07690 Major Facilitator Superfamily HQ398_RS21420 PF01725 Ham1 family HQ398_RS21425 PF06969 HemN C-terminal domain HQ398_RS21425 PF04055 Radical SAM superfamily HQ398_RS21430 PF03889 Alternative ribosome-rescue factor A HQ398_RS21435 PF13411 MerR HTH family regulatory protein HQ398_RS21445 PF01808 AICARFT/IMPCHase bienzyme HQ398_RS21445 PF02142 MGS-like domain HQ398_RS21450 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ398_RS21450 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ398_RS21450 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ398_RS21470 PF04542 Sigma-70 region 2 HQ398_RS21470 PF04545 Sigma-70, region 4 HQ398_RS21470 PF04539 Sigma-70 region 3 HQ398_RS21470 PF00140 Sigma-70 factor, region 1.2 HQ398_RS21470 PF03979 Sigma-70 factor, region 1.1 HQ398_RS21470 PF04546 Sigma-70, non-essential region HQ398_RS21475 PF01807 CHC2 zinc finger HQ398_RS21475 PF08275 DNA primase catalytic core, N-terminal domain HQ398_RS21475 PF08278 DNA primase DnaG DnaB-binding HQ398_RS21475 PF10410 DnaB-helicase binding domain of primase HQ398_RS21480 PF09424 Yqey-like protein HQ398_RS21485 PF01165 Ribosomal protein S21 HQ398_RS21490 PF00814 Glycoprotease family HQ398_RS21495 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ398_RS21500 PF00206 Lyase HQ398_RS21500 PF10415 Fumarase C C-terminus HQ398_RS21505 PF04186 FxsA cytoplasmic membrane protein HQ398_RS21510 PF01554 MatE HQ398_RS21515 PF00166 Chaperonin 10 Kd subunit HQ398_RS21520 PF00118 TCP-1/cpn60 chaperonin family HQ398_RS21530 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS21530 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS21530 PF00563 EAL domain HQ398_RS21560 PF02867 Ribonucleotide reductase, barrel domain HQ398_RS21560 PF00317 Ribonucleotide reductase, all-alpha domain HQ398_RS21560 PF08343 Ribonucleotide reductase N-terminal HQ398_RS21570 PF02562 PhoH-like protein HQ398_RS21570 PF13638 PIN domain HQ398_RS21575 PF00005 ABC transporter HQ398_RS21580 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_RS21600 PF00694 Aconitase C-terminal domain HQ398_RS21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS21605 PF03466 LysR substrate binding domain HQ398_RS21610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_RS21610 PF03466 LysR substrate binding domain HQ398_RS21645 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HQ398_RS21660 PF00975 Thioesterase domain HQ398_RS21660 PF00550 Phosphopantetheine attachment site HQ398_RS21660 PF00668 Condensation domain HQ398_RS21660 PF13193 AMP-binding enzyme C-terminal domain HQ398_RS21660 PF00501 AMP-binding enzyme HQ398_RS21675 PF13426 PAS domain HQ398_RS21675 PF08447 PAS fold HQ398_RS21675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS21700 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS21700 PF00563 EAL domain HQ398_RS21700 PF01590 GAF domain HQ398_RS21700 PF00360 Phytochrome region HQ398_RS21710 PF00672 HAMP domain HQ398_RS21710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS21710 PF17202 Single cache domain 3 HQ398_RS21745 PF03707 Bacterial signalling protein N terminal repeat HQ398_RS21745 PF00563 EAL domain HQ398_RS21745 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS21765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_RS21765 PF00672 HAMP domain HQ398_RS21765 PF12729 Four helix bundle sensory module for signal transduction HQ398_RS21780 PF03747 ADP-ribosylglycohydrolase HQ398_RS21785 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS21790 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_RS21850 PF00563 EAL domain HQ398_RS21850 PF08448 PAS fold HQ398_RS21850 PF00990 Diguanylate cyclase, GGDEF domain HQ398_RS21855 PF00535 Glycosyl transferase family 2 HQ398_RS21860 PF03552 Cellulose synthase HQ398_RS21860 PF07238 PilZ domain HQ398_RS21860 PF00535 Glycosyl transferase family 2