locus-tag	class	description
JJL53_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JJL53_RS00010	COG0592	DNA-directed DNA polymerase activity
JJL53_RS00020	COG0187	DNA topoisomerase II activity
JJL53_RS00030	COG2378	regulation of single-species biofilm formation
JJL53_RS00040	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JJL53_RS00045	COG0071	Belongs to the small heat shock protein (HSP20) family
JJL53_RS00050	COG0071	Belongs to the small heat shock protein (HSP20) family
JJL53_RS00055	COG3977	Valine--pyruvate aminotransferase
JJL53_RS00070	COG2814	Major facilitator Superfamily
JJL53_RS00075	COG0745	RESPONSE REGULATOR receiver
JJL53_RS00080	COG2205	protein histidine kinase activity
JJL53_RS00100	COG1733	regulation of RNA biosynthetic process
JJL53_RS00105	COG2267	carboxylic ester hydrolase activity
JJL53_RS00115	COG0604	alcohol dehydrogenase
JJL53_RS00125	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJL53_RS00140	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_RS00145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS00150	COG1309	transcriptional regulator
JJL53_RS00180	COG0561	phosphatase activity
JJL53_RS00185	COG2267	carboxylic ester hydrolase activity
JJL53_RS00190	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JJL53_RS00195	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JJL53_RS00200	COG1758	RNA polymerase activity
JJL53_RS00210	COG0859	PFAM glycosyl transferase family 9
JJL53_RS00215	COG3642	lipopolysaccharide core region biosynthetic process
JJL53_RS00255	COG0589	response to stress
JJL53_RS00260	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JJL53_RS00265	COG3706	GGDEF domain
JJL53_RS00270	COG1528	Iron-storage protein
JJL53_RS00275	COG2081	HI0933 family
JJL53_RS00280	COG2223	nitrite transmembrane transporter activity
JJL53_RS00290	COG3275	phosphorelay sensor kinase activity
JJL53_RS00295	COG3279	Response regulator of the LytR AlgR family
JJL53_RS00300	COG2223	nitrite transmembrane transporter activity
JJL53_RS00305	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JJL53_RS00310	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JJL53_RS00320	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JJL53_RS00350	COG0045	succinate-CoA ligase (ADP-forming) activity
JJL53_RS00350	COG1042	CoA-binding domain protein
JJL53_RS00350	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JJL53_RS00360	COG0583	DNA-binding transcription factor activity
JJL53_RS00365	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JJL53_RS00370	COG0166	Belongs to the GPI family
JJL53_RS00380	COG0668	transmembrane transport
JJL53_RS00385	COG1309	transcriptional regulator
JJL53_RS00390	COG0756	dUTP diphosphatase activity
JJL53_RS00395	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JJL53_RS00400	COG2003	Belongs to the UPF0758 family
JJL53_RS00405	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JJL53_RS00410	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JJL53_RS00420	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JJL53_RS00425	COG2990	Protein conserved in bacteria
JJL53_RS00430	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JJL53_RS00435	COG0859	PFAM glycosyl transferase family 9
JJL53_RS00440	COG0463	Glycosyl transferase, family 2
JJL53_RS00445	COG0859	PFAM glycosyl transferase family 9
JJL53_RS00450	COG1519	Transferase
JJL53_RS00460	COG1561	YicC-like family, N-terminal region
JJL53_RS00465	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JJL53_RS00470	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JJL53_RS00480	COG0789	Transcriptional regulator
JJL53_RS00485	COG3706	GGDEF domain
JJL53_RS00485	COG5001	Diguanylate cyclase
JJL53_RS00485	COG4251	negative regulation of phosphorylation
JJL53_RS00485	COG2203	Gaf domain
JJL53_RS00490	COG3084	Protein conserved in bacteria
JJL53_RS00500	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JJL53_RS00505	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JJL53_RS00510	COG3639	organic phosphonate transmembrane transporter activity
JJL53_RS00515	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JJL53_RS00520	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JJL53_RS00530	COG1335	isochorismatase
JJL53_RS00540	COG1683	Conserved Protein
JJL53_RS00545	COG0204	Acyl-transferase
JJL53_RS00550	COG0204	Acyl-transferase
JJL53_RS00555	COG0606	chelatase, subunit chli
JJL53_RS00565	COG3978	acetolactate synthase activity
JJL53_RS00575	COG0129	dihydroxy-acid dehydratase activity
JJL53_RS00585	COG5433	transposase activity
JJL53_RS00590	COG3039	Transposase
JJL53_RS00600	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JJL53_RS00605	COG0254	rRNA binding
JJL53_RS00610	COG0702	epimerase
JJL53_RS00615	COG0281	malic enzyme
JJL53_RS00625	COG2205	protein histidine kinase activity
JJL53_RS00630	COG0745	RESPONSE REGULATOR receiver
JJL53_RS00635	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JJL53_RS00650	COG0366	Alpha amylase catalytic
JJL53_RS00665	COG0443	Heat shock 70 kDa protein
JJL53_RS00670	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJL53_RS00675	COG3045	CreA protein
JJL53_RS00700	COG0174	glutamine synthetase
JJL53_RS00720	COG3842	ATPase activity
JJL53_RS00725	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJL53_RS00730	COG1177	transmembrane transport
JJL53_RS00735	COG2258	MOSC domain
JJL53_RS00760	COG2050	protein possibly involved in aromatic compounds catabolism
JJL53_RS00765	COG0514	ATP-dependent DNA helicase (RecQ)
JJL53_RS00780	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
JJL53_RS00790	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JJL53_RS00795	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JJL53_RS00800	COG2239	Acts as a magnesium transporter
JJL53_RS00805	COG1648	precorrin-2 dehydrogenase activity
JJL53_RS00805	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JJL53_RS00810	COG2116	formate transmembrane transporter activity
JJL53_RS00820	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_RS00825	COG0842	Transport permease protein
JJL53_RS00830	COG0842	Transport permease protein
JJL53_RS00835	COG1131	(ABC) transporter
JJL53_RS00840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS00860	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JJL53_RS00865	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JJL53_RS00875	COG0018	arginyl-trna synthetase
JJL53_RS00885	COG1595	DNA-templated transcription, initiation
JJL53_RS00890	COG3806	Anti-sigma factor
JJL53_RS00895	COG1968	undecaprenyl-diphosphatase activity
JJL53_RS00900	COG0667	Aldo Keto reductase
JJL53_RS00905	COG2017	converts alpha-aldose to the beta-anomer
JJL53_RS00910	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JJL53_RS00920	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJL53_RS00925	COG1609	Transcriptional regulator
JJL53_RS00930	COG3250	beta-galactosidase activity
JJL53_RS00945	COG4211	Belongs to the binding-protein-dependent transport system permease family
JJL53_RS00980	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JJL53_RS00985	COG1288	antiporter activity
JJL53_RS00990	COG1438	arginine binding
JJL53_RS00995	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
JJL53_RS01000	COG0540	Belongs to the ATCase OTCase family
JJL53_RS01015	COG0688	phosphatidylethanolamine metabolic process
JJL53_RS01030	COG3040	lipid binding
JJL53_RS01035	COG2207	Transcriptional regulator
JJL53_RS01040	COG1979	alcohol dehydrogenase
JJL53_RS01045	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JJL53_RS01050	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JJL53_RS01055	COG3681	Belongs to the UPF0597 family
JJL53_RS01065	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_RS01070	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJL53_RS01075	COG0564	pseudouridine synthase activity
JJL53_RS01085	COG0542	response to heat
JJL53_RS01090	COG2502	aspartate--ammonia ligase
JJL53_RS01095	COG1522	sequence-specific DNA binding
JJL53_RS01115	COG5413	integral membrane protein
JJL53_RS01120	COG0517	IMP dehydrogenase activity
JJL53_RS01120	COG0516	GMP reductase activity
JJL53_RS01140	COG2205	protein histidine kinase activity
JJL53_RS01150	COG2204	response regulator
JJL53_RS01165	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
JJL53_RS01195	COG0243	molybdopterin cofactor binding
JJL53_RS01200	COG3005	denitrification pathway
JJL53_RS01205	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JJL53_RS01210	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JJL53_RS01215	COG0569	domain protein
JJL53_RS01220	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JJL53_RS01245	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JJL53_RS01260	COG0250	Participates in transcription elongation, termination and antitermination
JJL53_RS01265	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JJL53_RS01270	COG0081	regulation of translation
JJL53_RS01275	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JJL53_RS01280	COG0222	ribosome binding
JJL53_RS01285	COG0085	RNA polymerase activity
JJL53_RS01290	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JJL53_RS01295	COG2964	Protein conserved in bacteria
JJL53_RS01315	COG2168	tRNA wobble position uridine thiolation
JJL53_RS01320	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JJL53_RS01325	COG0049	tRNA binding
JJL53_RS01330	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JJL53_RS01335	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JJL53_RS01340	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JJL53_RS01380	COG1484	DNA-dependent DNA replication
JJL53_RS01390	COG5433	transposase activity
JJL53_RS01405	COG2252	PERMEase
JJL53_RS01410	COG2376	Dihydroxyacetone kinase
JJL53_RS01415	COG1461	Dihydroxyacetone kinase
JJL53_RS01430	COG3284	Transcriptional regulator
JJL53_RS01440	COG0628	permease
JJL53_RS01465	COG0753	catalase activity
JJL53_RS01470	COG0454	-acetyltransferase
JJL53_RS01470	COG0456	acetyltransferase
JJL53_RS01475	COG2207	Transcriptional regulator
JJL53_RS01490	COG2199	diguanylate cyclase activity
JJL53_RS01490	COG2203	Gaf domain
JJL53_RS01500	COG3842	ATPase activity
JJL53_RS01510	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJL53_RS01535	COG0583	DNA-binding transcription factor activity
JJL53_RS01545	COG1741	Belongs to the pirin family
JJL53_RS01550	COG2259	Doxx family
JJL53_RS01555	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JJL53_RS01560	COG1074	ATP-dependent DNA helicase activity
JJL53_RS01565	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JJL53_RS01570	COG3039	Transposase
JJL53_RS01580	COG0346	lactoylglutathione lyase activity
JJL53_RS01590	COG0004	ammonium transporteR
JJL53_RS01595	COG0347	Belongs to the P(II) protein family
JJL53_RS01600	COG3706	GGDEF domain
JJL53_RS01630	COG1278	Cold shock
JJL53_RS01650	COG2197	response regulator
JJL53_RS01655	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JJL53_RS01665	COG3047	cAMP biosynthetic process
JJL53_RS01690	COG1368	sulfuric ester hydrolase activity
JJL53_RS01720	COG4221	oxidoreductase activity
JJL53_RS01735	COG1979	alcohol dehydrogenase
JJL53_RS01750	COG2873	o-acetylhomoserine
JJL53_RS01780	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JJL53_RS01790	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JJL53_RS01795	COG2949	membrane
JJL53_RS01800	COG3291	Pkd domain containing protein
JJL53_RS01805	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_RS01810	COG1441	menaquinone biosynthetic process
JJL53_RS01815	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JJL53_RS01820	COG0596	Alpha beta hydrolase
JJL53_RS01825	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
JJL53_RS01830	COG1169	isochorismate synthase
JJL53_RS01835	COG1575	Belongs to the MenA family. Type 1 subfamily
JJL53_RS01865	COG0513	Belongs to the DEAD box helicase family
JJL53_RS01870	COG5433	transposase activity
JJL53_RS01875	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JJL53_RS01890	COG1671	Belongs to the UPF0178 family
JJL53_RS01915	COG3722	fumarate hydratase activity
JJL53_RS01920	COG0246	Mannitol dehydrogenase
JJL53_RS01925	COG2213	PTS system mannitol-specific
JJL53_RS01925	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_RS01930	COG1484	DNA-dependent DNA replication
JJL53_RS01935	COG4584	PFAM Integrase catalytic
JJL53_RS01945	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
JJL53_RS01960	COG2771	luxR family
JJL53_RS02000	COG1560	Kdo2-lipid A biosynthetic process
JJL53_RS02005	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JJL53_RS02005	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JJL53_RS02010	COG1538	Outer membrane efflux protein
JJL53_RS02015	COG0494	nUDIX hydrolase
JJL53_RS02020	COG3151	Protein conserved in bacteria
JJL53_RS02030	COG3150	esterase
JJL53_RS02035	COG1051	belongs to the nudix hydrolase family
JJL53_RS02055	COG3039	Transposase
JJL53_RS02145	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJL53_RS02165	COG0204	Acyl-transferase
JJL53_RS02170	COG1842	Phage shock protein A
JJL53_RS02185	COG2827	Endonuclease containing a URI domain
JJL53_RS02195	COG1573	uracil-dna glycosylase
JJL53_RS02205	COG0583	DNA-binding transcription factor activity
JJL53_RS02210	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JJL53_RS02215	COG1121	(ABC) transporter
JJL53_RS02220	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
JJL53_RS02250	COG0739	heme binding
JJL53_RS02260	COG3068	Protein conserved in bacteria
JJL53_RS02280	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JJL53_RS02290	COG1546	Belongs to the CinA family
JJL53_RS02295	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JJL53_RS02310	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JJL53_RS02315	COG0527	aspartate kinase activity
JJL53_RS02320	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
JJL53_RS02355	COG1686	Belongs to the peptidase S11 family
JJL53_RS02360	COG0586	Pfam SNARE associated Golgi protein
JJL53_RS02365	COG1253	flavin adenine dinucleotide binding
JJL53_RS02375	COG2927	DNA polymerase III (CHI subunit)
JJL53_RS02380	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJL53_RS02385	COG0795	lipopolysaccharide-transporting ATPase activity
JJL53_RS02390	COG0795	lipopolysaccharide-transporting ATPase activity
JJL53_RS02425	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JJL53_RS02445	COG0084	hydrolase, TatD family'
JJL53_RS02450	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JJL53_RS02460	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JJL53_RS02465	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JJL53_RS02470	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JJL53_RS02485	COG3064	Membrane
JJL53_RS02495	COG0560	Phosphoserine phosphatase
JJL53_RS02510	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JJL53_RS02520	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
JJL53_RS02525	COG0776	regulation of translation
JJL53_RS02540	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JJL53_RS02545	COG0735	belongs to the Fur family
JJL53_RS02565	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JJL53_RS02570	COG0513	Belongs to the DEAD box helicase family
JJL53_RS02575	COG3022	response to hydroperoxide
JJL53_RS02590	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JJL53_RS02595	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JJL53_RS02600	COG0762	integral membrane protein
JJL53_RS02605	COG1872	DUF167
JJL53_RS02625	COG3112	Uncharacterised protein family (UPF0231)
JJL53_RS02630	COG3835	regulator
JJL53_RS02635	COG2610	gluconate transmembrane transporter activity
JJL53_RS02640	COG1929	Belongs to the glycerate kinase type-1 family
JJL53_RS02655	COG0583	DNA-binding transcription factor activity
JJL53_RS02660	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JJL53_RS02675	COG0347	Belongs to the P(II) protein family
JJL53_RS02680	COG1840	ABC-type Fe3 transport system, periplasmic component
JJL53_RS02695	COG2837	iron assimilation
JJL53_RS02700	COG1438	arginine binding
JJL53_RS02705	COG1126	abc transporter atp-binding protein
JJL53_RS02710	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_RS02715	COG4215	(ABC) transporter
JJL53_RS02720	COG4160	amino acid transport
JJL53_RS02725	COG0039	L-malate dehydrogenase activity
JJL53_RS02730	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JJL53_RS02735	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJL53_RS02735	COG1017	nitric oxide dioxygenase activity
JJL53_RS02740	COG3385	transposase activity
JJL53_RS02750	COG4536	flavin adenine dinucleotide binding
JJL53_RS02755	COG4137	Cytochrome C assembly protein
JJL53_RS02760	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JJL53_RS02765	COG0228	four-way junction DNA binding
JJL53_RS02770	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JJL53_RS02775	COG0336	Belongs to the RNA methyltransferase TrmD family
JJL53_RS02780	COG0335	large ribosomal subunit rRNA binding
JJL53_RS02795	COG1051	belongs to the nudix hydrolase family
JJL53_RS02805	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JJL53_RS02810	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JJL53_RS02815	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JJL53_RS02825	COG0583	DNA-binding transcription factor activity
JJL53_RS02830	COG0640	Transcriptional regulator
JJL53_RS02835	COG0268	Binds directly to 16S ribosomal RNA
JJL53_RS02840	COG0728	peptidoglycan biosynthetic process
JJL53_RS02845	COG0196	riboflavin kinase activity
JJL53_RS02850	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JJL53_RS02855	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JJL53_RS02860	COG1047	Peptidyl-prolyl cis-trans
JJL53_RS02865	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JJL53_RS02885	COG5433	transposase activity
JJL53_RS02910	COG5433	transposase activity
JJL53_RS02925	COG3385	transposase activity
JJL53_RS02935	COG4584	PFAM Integrase catalytic
JJL53_RS02940	COG1484	DNA-dependent DNA replication
JJL53_RS02950	COG5433	transposase activity
JJL53_RS02955	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJL53_RS02955	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JJL53_RS02970	COG1854	S-ribosylhomocysteine lyase activity
JJL53_RS02975	COG3706	GGDEF domain
JJL53_RS02980	COG0557	exoribonuclease II activity
JJL53_RS02985	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JJL53_RS02995	COG2153	protein acetylation
JJL53_RS03010	COG1914	H( )-stimulated, divalent metal cation uptake system
JJL53_RS03015	COG0360	Binds together with S18 to 16S ribosomal RNA
JJL53_RS03020	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JJL53_RS03025	COG0359	binds to the 23S rRNA
JJL53_RS03050	COG1064	alcohol dehydrogenase
JJL53_RS03055	COG1238	metal cluster binding
JJL53_RS03060	COG0612	Peptidase, M16
JJL53_RS03065	COG2918	glutathione biosynthetic process
JJL53_RS03070	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JJL53_RS03075	COG1027	Aspartate ammonia-lyase
JJL53_RS03080	COG3030	protein affecting phage T7 exclusion by the F plasmid
JJL53_RS03085	COG0534	Mate efflux family protein
JJL53_RS03090	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JJL53_RS03095	COG0459	protein refolding
JJL53_RS03115	COG0564	pseudouridine synthase activity
JJL53_RS03120	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JJL53_RS03155	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JJL53_RS03165	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JJL53_RS03170	COG4208	sulfate ABC transporter
JJL53_RS03175	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JJL53_RS03180	COG0583	DNA-binding transcription factor activity
JJL53_RS03190	COG3397	chitin binding
JJL53_RS03195	COG0840	transmembrane signaling receptor activity
JJL53_RS03220	COG1328	CTP reductase activity
JJL53_RS03225	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JJL53_RS03240	COG1448	Aminotransferase
JJL53_RS03250	COG2194	sulfuric ester hydrolase activity
JJL53_RS03270	COG1215	transferase activity, transferring glycosyl groups
JJL53_RS03280	COG3118	belongs to the thioredoxin family
JJL53_RS03280	COG0457	Tetratricopeptide repeat
JJL53_RS03300	COG3385	transposase activity
JJL53_RS03320	COG0513	Belongs to the DEAD box helicase family
JJL53_RS03360	COG4166	transmembrane transport
JJL53_RS03375	COG1024	Enoyl-CoA hydratase
JJL53_RS03390	COG4221	oxidoreductase activity
JJL53_RS03395	COG0442	prolyl-tRNA aminoacylation
JJL53_RS03400	COG0632	four-way junction helicase activity
JJL53_RS03405	COG2255	four-way junction helicase activity
JJL53_RS03410	COG1271	oxidase subunit
JJL53_RS03415	COG1294	oxidase, subunit
JJL53_RS03420	COG4890	Cyd operon protein YbgT
JJL53_RS03425	COG3790	cyd operon protein YbgE
JJL53_RS03430	COG0824	Thioesterase
JJL53_RS03435	COG0811	peptide transport
JJL53_RS03450	COG0823	Involved in the tonB-independent uptake of proteins
JJL53_RS03455	COG2885	chlorophyll binding
JJL53_RS03460	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JJL53_RS03535	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JJL53_RS03545	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JJL53_RS03550	COG1640	4-alpha-glucanotransferase
JJL53_RS03555	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JJL53_RS03580	COG2130	NADP-dependent
JJL53_RS03585	COG1846	Transcriptional regulator
JJL53_RS03615	COG0561	phosphatase activity
JJL53_RS03630	COG0733	neurotransmitter:sodium symporter activity
JJL53_RS03635	COG0733	neurotransmitter:sodium symporter activity
JJL53_RS03650	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJL53_RS03665	COG1794	racemase activity, acting on amino acids and derivatives
JJL53_RS03675	COG1022	Amp-dependent synthetase and ligase
JJL53_RS03685	COG0456	acetyltransferase
JJL53_RS03700	COG2425	protein containing a von Willebrand factor type A (vWA) domain
JJL53_RS03705	COG3300	MHYT domain
JJL53_RS03705	COG5001	Diguanylate cyclase
JJL53_RS03715	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JJL53_RS03725	COG1902	pentaerythritol trinitrate reductase activity
JJL53_RS03745	COG2957	Belongs to the agmatine deiminase family
JJL53_RS03750	COG0154	amidase activity
JJL53_RS03795	COG0513	Belongs to the DEAD box helicase family
JJL53_RS03800	COG3706	GGDEF domain
JJL53_RS03810	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
JJL53_RS03875	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JJL53_RS03880	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
JJL53_RS03885	COG1178	ABC-type Fe3 transport system permease component
JJL53_RS03890	COG4143	(ABC) transporter
JJL53_RS03905	COG0066	3-isopropylmalate dehydratase activity
JJL53_RS03910	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JJL53_RS03915	COG0473	3-isopropylmalate dehydrogenase activity
JJL53_RS03920	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JJL53_RS03930	COG0671	phosphoesterase, PA-phosphatase related
JJL53_RS03935	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JJL53_RS03945	COG0028	Belongs to the TPP enzyme family
JJL53_RS03950	COG0440	acetolactate synthase activity
JJL53_RS03955	COG0280	phosphate acetyltransferase
JJL53_RS03955	COG0857	belongs to the CobB CobQ family
JJL53_RS03960	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JJL53_RS03970	COG3013	Belongs to the UPF0304 family
JJL53_RS03975	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JJL53_RS03980	COG2716	regulation of RNA biosynthetic process
JJL53_RS03985	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJL53_RS03990	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JJL53_RS03995	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JJL53_RS04035	COG2198	Histidine kinase
JJL53_RS04035	COG5002	protein histidine kinase activity
JJL53_RS04035	COG0784	Response regulator, receiver
JJL53_RS04040	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JJL53_RS04050	COG3300	MHYT domain
JJL53_RS04050	COG5001	Diguanylate cyclase
JJL53_RS04095	COG0840	transmembrane signaling receptor activity
JJL53_RS04110	COG1464	Belongs to the NlpA lipoprotein family
JJL53_RS04115	COG2011	ABC-type metal ion transport system permease component
JJL53_RS04120	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JJL53_RS04140	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JJL53_RS04140	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JJL53_RS04145	COG0802	atpase or kinase
JJL53_RS04155	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JJL53_RS04160	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JJL53_RS04165	COG1923	regulation of RNA biosynthetic process
JJL53_RS04170	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JJL53_RS04175	COG0330	HflC and HflK could
JJL53_RS04180	COG0330	HflC and HflK could
JJL53_RS04185	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JJL53_RS04190	COG0142	geranyltranstransferase activity
JJL53_RS04195	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JJL53_RS04200	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JJL53_RS04205	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JJL53_RS04210	COG3314	Sporulation integral membrane protein YlbJ
JJL53_RS04215	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JJL53_RS04220	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJL53_RS04230	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JJL53_RS04235	COG2967	ApaG domain
JJL53_RS04240	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JJL53_RS04245	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JJL53_RS04255	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JJL53_RS04260	COG3178	'Phosphotransferase
JJL53_RS04265	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JJL53_RS04270	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JJL53_RS04280	COG2252	PERMEase
JJL53_RS04290	COG0488	(ABC) transporter
JJL53_RS04295	COG0582	viral genome integration into host DNA
JJL53_RS04335	COG2974	May be involved in recombination
JJL53_RS04370	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJL53_RS04430	COG0305	Participates in initiation and elongation during chromosome replication
JJL53_RS04455	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JJL53_RS04615	COG0741	lytic transglycosylase activity
JJL53_RS04620	COG0463	Glycosyl transferase, family 2
JJL53_RS04630	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JJL53_RS04655	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_RS04665	COG3721	Heme iron utilization protein
JJL53_RS04670	COG0748	coenzyme F420 binding
JJL53_RS04705	COG2814	Major facilitator Superfamily
JJL53_RS04710	COG2205	protein histidine kinase activity
JJL53_RS04750	COG1765	OsmC-like protein
JJL53_RS04765	COG3954	Phosphoribulokinase
JJL53_RS04770	COG3089	Belongs to the UPF0270 family
JJL53_RS04780	COG0429	hydrolase of the alpha beta-hydrolase fold
JJL53_RS04785	COG0784	Response regulator, receiver
JJL53_RS04785	COG0835	chemotaxis
JJL53_RS04795	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
JJL53_RS04800	COG1047	Peptidyl-prolyl cis-trans
JJL53_RS04815	COG0545	Peptidyl-prolyl cis-trans isomerase
JJL53_RS04865	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JJL53_RS04875	COG0506	proline dehydrogenase activity
JJL53_RS04875	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JJL53_RS04875	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JJL53_RS04885	COG0114	fumarate hydratase activity
JJL53_RS04925	COG2200	EAL domain
JJL53_RS04925	COG2199	diguanylate cyclase activity
JJL53_RS04925	COG2203	Gaf domain
JJL53_RS04950	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JJL53_RS04960	COG1280	lysine exporter protein (LysE YggA)
JJL53_RS04970	COG0826	peptidase U32
JJL53_RS04980	COG3813	Protein conserved in bacteria
JJL53_RS05000	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JJL53_RS05025	COG0300	oxidoreductase activity
JJL53_RS05045	COG2610	gluconate transmembrane transporter activity
JJL53_RS05050	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJL53_RS05055	COG3622	Belongs to the hyi family
JJL53_RS05060	COG0235	Class ii aldolase
JJL53_RS05065	COG3395	kinase activity
JJL53_RS05070	COG2084	Dehydrogenase
JJL53_RS05075	COG1349	DNA-binding transcription factor activity
JJL53_RS05085	COG2133	pyrroloquinoline quinone binding
JJL53_RS05100	COG1609	Transcriptional regulator
JJL53_RS05120	COG1175	transmembrane transport
JJL53_RS05135	COG3940	Belongs to the glycosyl hydrolase 43 family
JJL53_RS05140	COG4580	involved in the transport of maltose and maltodextrins
JJL53_RS05155	COG4580	involved in the transport of maltose and maltodextrins
JJL53_RS05180	COG0077	Prephenate dehydratase
JJL53_RS05180	COG1605	Chorismate mutase
JJL53_RS05205	COG3272	Protein of unknown function (DUF1722)
JJL53_RS05210	COG0789	Transcriptional regulator
JJL53_RS05215	COG0415	Belongs to the DNA photolyase family
JJL53_RS05225	COG0300	oxidoreductase activity
JJL53_RS05240	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JJL53_RS05265	COG0783	Belongs to the Dps family
JJL53_RS05270	COG1151	hydroxylamine reductase activity
JJL53_RS05275	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJL53_RS05280	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJL53_RS05295	COG3039	Transposase
JJL53_RS05365	COG2003	Belongs to the UPF0758 family
JJL53_RS05400	COG3311	Transcriptional regulator
JJL53_RS05440	COG3039	Transposase
JJL53_RS05455	COG5433	transposase activity
JJL53_RS05465	COG3385	transposase activity
JJL53_RS05495	COG0582	viral genome integration into host DNA
JJL53_RS05510	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JJL53_RS05520	COG0798	PFAM Bile acid sodium symporter
JJL53_RS05530	COG1393	Belongs to the ArsC family
JJL53_RS05555	COG0659	secondary active sulfate transmembrane transporter activity
JJL53_RS05560	COG2771	luxR family
JJL53_RS05610	COG4584	PFAM Integrase catalytic
JJL53_RS05615	COG1484	DNA-dependent DNA replication
JJL53_RS05635	COG1666	GTP binding
JJL53_RS05640	COG3248	Nucleoside-binding outer membrane protein
JJL53_RS05645	COG2211	Major facilitator Superfamily
JJL53_RS05655	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JJL53_RS05665	COG2813	Specifically methylates the guanine in position
JJL53_RS05670	COG0271	Belongs to the BolA IbaG family
JJL53_RS05675	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_RS05680	COG1805	sodium ion transport
JJL53_RS05685	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_RS05690	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_RS05695	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_RS05700	COG2871	sodium ion transport
JJL53_RS05705	COG1477	protein flavinylation
JJL53_RS05720	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_RS05725	COG0840	transmembrane signaling receptor activity
JJL53_RS05730	COG0583	DNA-binding transcription factor activity
JJL53_RS05740	COG2363	Small membrane protein
JJL53_RS05745	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
JJL53_RS05755	COG0473	3-isopropylmalate dehydrogenase activity
JJL53_RS05760	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJL53_RS05765	COG1611	Belongs to the LOG family
JJL53_RS05780	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JJL53_RS05780	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JJL53_RS05790	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
JJL53_RS05815	COG3098	single-species biofilm formation
JJL53_RS05820	COG0564	pseudouridine synthase activity
JJL53_RS05830	COG5433	transposase activity
JJL53_RS05835	COG4580	involved in the transport of maltose and maltodextrins
JJL53_RS05845	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_RS05845	COG1263	PTS System
JJL53_RS05855	COG2171	N-acyltransferase activity
JJL53_RS05860	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JJL53_RS05865	COG0024	Methionine aminopeptidase
JJL53_RS05870	COG0052	Belongs to the universal ribosomal protein uS2 family
JJL53_RS05875	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JJL53_RS05880	COG0528	UMP kinase activity
JJL53_RS05885	COG0233	cytoplasmic translational termination
JJL53_RS05890	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JJL53_RS05895	COG0575	Belongs to the CDS family
JJL53_RS05900	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JJL53_RS05905	COG0750	zinc metalloprotease
JJL53_RS05920	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_RS05925	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJL53_RS05930	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_RS05935	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_RS05940	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JJL53_RS05950	COG0825	malonyl-CoA metabolic process
JJL53_RS05960	COG0583	DNA-binding transcription factor activity
JJL53_RS05965	COG0814	amino acid
JJL53_RS05970	COG0531	amino acid
JJL53_RS05980	COG0488	(ABC) transporter
JJL53_RS05990	COG3590	peptidase
JJL53_RS05995	COG0037	tRNA processing
JJL53_RS06000	COG3706	GGDEF domain
JJL53_RS06035	COG0366	Alpha amylase catalytic
JJL53_RS06055	COG0463	Glycosyl transferase, family 2
JJL53_RS06070	COG2989	Protein conserved in bacteria
JJL53_RS06075	COG3108	Peptidase M15
JJL53_RS06085	COG2860	membrane
JJL53_RS06095	COG1196	nuclear chromosome segregation
JJL53_RS06100	COG3115	cell septum assembly
JJL53_RS06105	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JJL53_RS06120	COG1328	CTP reductase activity
JJL53_RS06125	COG0602	queuosine metabolic process
JJL53_RS06150	COG1566	PFAM secretion protein HlyD family protein
JJL53_RS06165	COG0281	malic enzyme
JJL53_RS06170	COG3290	protein histidine kinase activity
JJL53_RS06180	COG0697	spore germination
JJL53_RS06195	COG3284	Transcriptional regulator
JJL53_RS06200	COG3706	GGDEF domain
JJL53_RS06205	COG0346	lactoylglutathione lyase activity
JJL53_RS06210	COG0745	RESPONSE REGULATOR receiver
JJL53_RS06215	COG5002	protein histidine kinase activity
JJL53_RS06235	COG1940	carbohydrate kinase activity
JJL53_RS06240	COG3142	Participates in the control of copper homeostasis
JJL53_RS06255	COG0545	Peptidyl-prolyl cis-trans isomerase
JJL53_RS06260	COG1131	(ABC) transporter
JJL53_RS06275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_RS06280	COG4597	amino acid ABC transporter
JJL53_RS06285	COG0765	amino acid transport
JJL53_RS06290	COG1126	abc transporter atp-binding protein
JJL53_RS06300	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JJL53_RS06305	COG0678	peroxiredoxin activity
JJL53_RS06315	COG0019	diaminopimelate decarboxylase activity
JJL53_RS06320	COG1115	amino acid carrier protein
JJL53_RS06325	COG0095	Lipoate-protein ligase
JJL53_RS06330	COG2233	PERMEase
JJL53_RS06345	COG0534	Mate efflux family protein
JJL53_RS06355	COG0281	malic enzyme
JJL53_RS06365	COG3328	transposase activity
JJL53_RS06390	COG3385	transposase activity
JJL53_RS06400	COG0733	neurotransmitter:sodium symporter activity
JJL53_RS06405	COG1752	Esterase of the alpha-beta hydrolase superfamily
JJL53_RS06410	COG3706	GGDEF domain
JJL53_RS06420	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_RS06425	COG1032	radical SAM domain protein
JJL53_RS06445	COG0673	inositol 2-dehydrogenase activity
JJL53_RS06450	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JJL53_RS06455	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JJL53_RS06460	COG0741	lytic transglycosylase activity
JJL53_RS06460	COG0739	heme binding
JJL53_RS06460	COG1196	nuclear chromosome segregation
JJL53_RS06485	COG0788	formyltetrahydrofolate deformylase activity
JJL53_RS06490	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JJL53_RS06500	COG3118	belongs to the thioredoxin family
JJL53_RS06510	COG0791	NLP P60 protein
JJL53_RS06515	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
JJL53_RS06530	COG1376	ErfK ybiS ycfS ynhG family protein
JJL53_RS06530	COG1388	LysM domain
JJL53_RS06550	COG3901	Regulator of nitric oxide reductase transcription
JJL53_RS06550	COG0348	domain, Protein
JJL53_RS06555	COG4263	nitrous-oxide reductase activity
JJL53_RS06580	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JJL53_RS06590	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_RS06640	COG0784	Response regulator, receiver
JJL53_RS06640	COG2205	protein histidine kinase activity
JJL53_RS06660	COG5433	transposase activity
JJL53_RS06670	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_RS06670	COG2205	protein histidine kinase activity
JJL53_RS06675	COG3384	dioxygenase
JJL53_RS06685	COG1283	sodium-dependent phosphate transmembrane transporter activity
JJL53_RS06695	COG0531	amino acid
JJL53_RS06700	COG0531	amino acid
JJL53_RS06720	COG1917	Cupin 2, conserved barrel domain protein
JJL53_RS06720	COG1396	sequence-specific DNA binding
JJL53_RS06725	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_RS06745	COG2974	May be involved in recombination
JJL53_RS06750	COG0456	acetyltransferase
JJL53_RS06755	COG0420	3'-5' exonuclease activity
JJL53_RS06765	COG3038	cytochrome b561
JJL53_RS06770	COG2190	(PTS) system
JJL53_RS06780	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_RS06785	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JJL53_RS06805	COG1720	tRNA m6t6A37 methyltransferase activity
JJL53_RS06825	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JJL53_RS06830	COG4988	ABC transporter
JJL53_RS06845	COG0745	RESPONSE REGULATOR receiver
JJL53_RS06855	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JJL53_RS06890	COG3153	acetyltransferase
JJL53_RS06925	COG3385	transposase activity
JJL53_RS06935	COG1598	PFAM Uncharacterised protein family UPF0150
JJL53_RS06960	COG0582	viral genome integration into host DNA
JJL53_RS06970	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JJL53_RS06975	COG2867	negative regulation of translational initiation
JJL53_RS06980	COG2914	Belongs to the UPF0125 (RnfH) family
JJL53_RS06985	COG0702	epimerase
JJL53_RS06990	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJL53_RS07005	COG0564	pseudouridine synthase activity
JJL53_RS07035	COG1280	lysine exporter protein (LysE YggA)
JJL53_RS07050	COG3263	regulation of cellular component size
JJL53_RS07060	COG1876	peptidase activity
JJL53_RS07065	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JJL53_RS07070	COG1393	Belongs to the ArsC family
JJL53_RS07075	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JJL53_RS07095	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JJL53_RS07120	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JJL53_RS07125	COG0017	Asparaginyl-tRNA synthetase
JJL53_RS07145	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JJL53_RS07150	COG0156	8-amino-7-oxononanoate synthase activity
JJL53_RS07155	COG1073	alpha beta
JJL53_RS07155	COG2226	methyltransferase
JJL53_RS07160	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JJL53_RS07165	COG0501	Belongs to the peptidase M48B family
JJL53_RS07170	COG0633	Ferredoxin
JJL53_RS07170	COG3217	Mosc domain protein beta barrel domain protein
JJL53_RS07170	COG0633	Ferredoxin
JJL53_RS07170	COG3217	Mosc domain protein beta barrel domain protein
JJL53_RS07180	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JJL53_RS07180	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JJL53_RS07180	COG1013	pyruvate-flavodoxin oxidoreductase activity
JJL53_RS07180	COG0674	pyruvate-flavodoxin oxidoreductase activity
JJL53_RS07185	COG2841	Protein conserved in bacteria
JJL53_RS07195	COG0534	Mate efflux family protein
JJL53_RS07230	COG1309	transcriptional regulator
JJL53_RS07245	COG0791	NLP P60 protein
JJL53_RS07250	COG0583	DNA-binding transcription factor activity
JJL53_RS07270	COG0500	methyltransferase
JJL53_RS07275	COG4106	trans-aconitate 2-methyltransferase activity
JJL53_RS07280	COG1801	Protein of unknown function DUF72
JJL53_RS07285	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JJL53_RS07290	COG0217	transcriptional regulatory protein
JJL53_RS07300	COG1940	carbohydrate kinase activity
JJL53_RS07300	COG1846	Transcriptional regulator
JJL53_RS07305	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JJL53_RS07310	COG0363	glucosamine-6-phosphate deaminase activity
JJL53_RS07315	COG1263	PTS System
JJL53_RS07315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_RS07315	COG2190	(PTS) system
JJL53_RS07325	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_RS07330	COG0735	belongs to the Fur family
JJL53_RS07340	COG0716	FMN binding
JJL53_RS07355	COG0596	Alpha beta hydrolase
JJL53_RS07360	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
JJL53_RS07365	COG0033	Phosphoglucomutase
JJL53_RS07375	COG1846	Transcriptional regulator
JJL53_RS07380	COG2951	lytic endotransglycosylase activity
JJL53_RS07385	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JJL53_RS07390	COG4136	ATPase activity
JJL53_RS07400	COG4134	Bacterial extracellular solute-binding protein
JJL53_RS07410	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJL53_RS07420	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JJL53_RS07430	COG0729	surface antigen
JJL53_RS07455	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JJL53_RS07465	COG0741	lytic transglycosylase activity
JJL53_RS07480	COG1607	acyl-coa hydrolase
JJL53_RS07495	COG1388	LysM domain
JJL53_RS07495	COG0741	lytic transglycosylase activity
JJL53_RS07500	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJL53_RS07505	COG2226	methyltransferase
JJL53_RS07510	COG0328	RNA-DNA hybrid ribonuclease activity
JJL53_RS07515	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJL53_RS07525	COG3437	response regulator, receiver
JJL53_RS07525	COG0784	Response regulator, receiver
JJL53_RS07530	COG1960	acyl-CoA dehydrogenase activity
JJL53_RS07535	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JJL53_RS07540	COG0121	glutamine amidotransferase
JJL53_RS07550	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JJL53_RS07570	COG0784	Response regulator, receiver
JJL53_RS07570	COG2205	protein histidine kinase activity
JJL53_RS07585	COG2197	response regulator
JJL53_RS07590	COG3850	Histidine kinase
JJL53_RS07595	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JJL53_RS07600	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JJL53_RS07610	COG0243	molybdopterin cofactor binding
JJL53_RS07615	COG0437	4 iron, 4 sulfur cluster binding
JJL53_RS07620	COG0348	domain, Protein
JJL53_RS07630	COG3005	denitrification pathway
JJL53_RS07635	COG0521	Mo-molybdopterin cofactor biosynthetic process
JJL53_RS07640	COG0315	cyclic pyranopterin monophosphate synthase activity
JJL53_RS07645	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JJL53_RS07650	COG0314	molybdopterin synthase activity
JJL53_RS07665	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JJL53_RS07670	COG0596	Alpha beta hydrolase
JJL53_RS07675	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JJL53_RS07685	COG0302	gtp cyclohydrolase
JJL53_RS07690	COG0840	transmembrane signaling receptor activity
JJL53_RS07700	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JJL53_RS07710	COG0583	DNA-binding transcription factor activity
JJL53_RS07735	COG0675	Transposase, IS605 OrfB family
JJL53_RS07750	COG2195	Cleaves the N-terminal amino acid of tripeptides
JJL53_RS07760	COG1166	arginine decarboxylase activity
JJL53_RS07785	COG1061	Type III restriction enzyme res subunit
JJL53_RS07805	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JJL53_RS07810	COG1187	pseudouridine synthase activity
JJL53_RS07815	COG2807	transmembrane transport
JJL53_RS07850	COG2979	Protein of unknown function (DUF533)
JJL53_RS07875	COG1595	DNA-templated transcription, initiation
JJL53_RS07900	COG3385	transposase activity
JJL53_RS07910	COG1294	oxidase, subunit
JJL53_RS07920	COG2814	Major facilitator Superfamily
JJL53_RS07925	COG0656	L-ascorbic acid biosynthetic process
JJL53_RS07950	COG0583	DNA-binding transcription factor activity
JJL53_RS07955	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JJL53_RS07960	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JJL53_RS07970	COG5433	transposase activity
JJL53_RS07980	COG1349	DNA-binding transcription factor activity
JJL53_RS07990	COG0584	glycerophosphoryl diester phosphodiesterase
JJL53_RS07995	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_RS08000	COG1605	Chorismate mutase
JJL53_RS08000	COG0287	Prephenate dehydrogenase
JJL53_RS08010	COG3085	chromosome segregation
JJL53_RS08015	COG4574	serine-type endopeptidase inhibitor activity
JJL53_RS08035	COG1770	oligopeptidase
JJL53_RS08040	COG4206	TonB-dependent receptor
JJL53_RS08045	COG3083	sulfuric ester hydrolase activity
JJL53_RS08050	COG3082	Protein of unknown function (DUF1414)
JJL53_RS08055	COG3081	Nucleoid-associated protein
JJL53_RS08060	COG3385	transposase activity
JJL53_RS08070	COG2182	Extracellular solute-binding protein
JJL53_RS08075	COG1175	transmembrane transport
JJL53_RS08080	COG3833	ABC-type maltose transport systems, permease component
JJL53_RS08085	COG3842	ATPase activity
JJL53_RS08110	COG0675	Transposase, IS605 OrfB family
JJL53_RS08130	COG4783	chaperone-mediated protein folding
JJL53_RS08140	COG1393	Belongs to the ArsC family
JJL53_RS08155	COG0675	Transposase, IS605 OrfB family
JJL53_RS08160	COG3385	transposase activity
JJL53_RS08165	COG2431	L-lysine efflux transmembrane transporter activity
JJL53_RS08175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_RS08185	COG4160	amino acid transport
JJL53_RS08235	COG1091	dTDP-4-dehydrorhamnose reductase activity
JJL53_RS08245	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JJL53_RS08255	COG1216	Glycosyl transferase, family 2
JJL53_RS08255	COG0438	transferase activity, transferring glycosyl groups
JJL53_RS08265	COG3385	transposase activity
JJL53_RS08275	COG3385	transposase activity
JJL53_RS08280	COG3385	transposase activity
JJL53_RS08345	COG5433	transposase activity
JJL53_RS08365	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JJL53_RS08375	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_RS08390	COG2373	Large extracellular alpha-helical protein
JJL53_RS08395	COG4953	penicillin-binding protein 1C
JJL53_RS08405	COG0301	tRNA thio-modification
JJL53_RS08405	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JJL53_RS08420	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JJL53_RS08450	COG5433	transposase activity
JJL53_RS08475	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JJL53_RS08485	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JJL53_RS08500	COG0346	lactoylglutathione lyase activity
JJL53_RS08505	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JJL53_RS08510	COG4660	Part of a membrane complex involved in electron transport
JJL53_RS08515	COG4659	FMN binding
JJL53_RS08520	COG4658	electron transport chain
JJL53_RS08530	COG2878	Part of a membrane complex involved in electron transport
JJL53_RS08535	COG4657	Part of a membrane complex involved in electron transport
JJL53_RS08540	COG0697	spore germination
JJL53_RS08560	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JJL53_RS08570	COG0436	Aminotransferase
JJL53_RS08580	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JJL53_RS08585	COG2027	D-alanyl-D-alanine carboxypeptidase
JJL53_RS08590	COG1061	Type III restriction enzyme res subunit
JJL53_RS08595	COG1566	PFAM secretion protein HlyD family protein
JJL53_RS08610	COG0675	Transposase, IS605 OrfB family
JJL53_RS08620	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JJL53_RS08620	COG3264	Mechanosensitive ion channel
JJL53_RS08625	COG1966	Carbon starvation protein
JJL53_RS08630	COG3279	Response regulator of the LytR AlgR family
JJL53_RS08635	COG3275	phosphorelay sensor kinase activity
JJL53_RS08645	COG1454	alcohol dehydrogenase
JJL53_RS08645	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_RS08650	COG2095	MarC family integral membrane protein
JJL53_RS08660	COG0601	transmembrane transport
JJL53_RS08665	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_RS08670	COG0444	Belongs to the ABC transporter superfamily
JJL53_RS08680	COG0861	Integral membrane protein TerC family
JJL53_RS08685	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JJL53_RS08695	COG1301	dicarboxylic acid transport
JJL53_RS08710	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JJL53_RS08725	COG0537	adenosine 5'-monophosphoramidase activity
JJL53_RS08770	COG0675	Transposase, IS605 OrfB family
JJL53_RS08775	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_RS08780	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_RS08790	COG2354	Protein conserved in bacteria
JJL53_RS08805	COG3150	esterase
JJL53_RS08810	COG1252	NADH dehydrogenase
JJL53_RS08820	COG0393	Putative heavy-metal-binding
JJL53_RS08840	COG1368	sulfuric ester hydrolase activity
JJL53_RS08850	COG0527	aspartate kinase activity
JJL53_RS08860	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JJL53_RS08860	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JJL53_RS08865	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JJL53_RS08880	COG2315	Protein conserved in bacteria
JJL53_RS08890	COG0583	DNA-binding transcription factor activity
JJL53_RS08895	COG1620	l-lactate permease
JJL53_RS08900	COG0247	lactate metabolic process
JJL53_RS08905	COG1139	Iron-sulfur cluster binding protein
JJL53_RS08920	COG3039	Transposase
JJL53_RS08930	COG0577	efflux transmembrane transporter activity
JJL53_RS08935	COG1136	(ABC) transporter
JJL53_RS08955	COG2814	Major facilitator Superfamily
JJL53_RS08980	COG0672	)-iron permease
JJL53_RS09015	COG2308	Evidence 4 Homologs of previously reported genes of
JJL53_RS09055	COG3385	transposase activity
JJL53_RS09105	COG0659	secondary active sulfate transmembrane transporter activity
JJL53_RS09120	COG3039	Transposase
JJL53_RS09125	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JJL53_RS09130	COG0326	Molecular chaperone. Has ATPase activity
JJL53_RS09135	COG0563	adenylate kinase activity
JJL53_RS09140	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JJL53_RS09150	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_RS09170	COG5001	Diguanylate cyclase
JJL53_RS09170	COG3300	MHYT domain
JJL53_RS09175	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JJL53_RS09195	COG1021	2,3-dihydroxybenzoate-AMP ligase
JJL53_RS09230	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JJL53_RS09235	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_RS09245	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JJL53_RS09250	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JJL53_RS09260	COG1120	ATPase activity
JJL53_RS09265	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_RS09270	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_RS09275	COG4771	TonB-dependent receptor
JJL53_RS09300	COG0644	oxidoreductase
JJL53_RS09300	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JJL53_RS09320	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JJL53_RS09325	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JJL53_RS09330	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_RS09335	COG0861	Integral membrane protein TerC family
JJL53_RS09350	COG1022	Amp-dependent synthetase and ligase
JJL53_RS09355	COG0295	cytidine deaminase activity
JJL53_RS09360	COG1346	cytolysis
JJL53_RS09365	COG1380	Effector of murein hydrolase LrgA
JJL53_RS09370	COG3345	alpha-galactosidase
JJL53_RS09380	COG2925	Exonuclease
JJL53_RS09395	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JJL53_RS09395	COG0392	lysyltransferase activity
JJL53_RS09405	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_RS09410	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJL53_RS09415	COG0436	Aminotransferase
JJL53_RS09420	COG0583	DNA-binding transcription factor activity
JJL53_RS09425	COG2160	L-arabinose isomerase activity
JJL53_RS09435	COG1069	ribulokinase activity
JJL53_RS09440	COG1879	ABC-type sugar transport system periplasmic component
JJL53_RS09445	COG1129	ABC transporter
JJL53_RS09460	COG3366	ferrous iron transmembrane transporter activity
JJL53_RS09465	COG0700	Nucleoside recognition
JJL53_RS09470	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JJL53_RS09495	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JJL53_RS09500	COG0254	rRNA binding
JJL53_RS09515	COG1451	nucleotide metabolic process
JJL53_RS09530	COG3069	C4-dicarboxylate transmembrane transporter activity
JJL53_RS09540	COG5433	transposase activity
JJL53_RS09555	COG4584	PFAM Integrase catalytic
JJL53_RS09560	COG1484	DNA-dependent DNA replication
JJL53_RS09580	COG5433	transposase activity
JJL53_RS09595	COG4584	PFAM Integrase catalytic
JJL53_RS09600	COG1484	DNA-dependent DNA replication
JJL53_RS09620	COG5433	transposase activity
JJL53_RS09640	COG5433	transposase activity
JJL53_RS09650	COG3385	transposase activity
JJL53_RS09655	COG5433	transposase activity
JJL53_RS09680	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JJL53_RS09690	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
JJL53_RS09700	COG0724	RNA recognition motif
JJL53_RS09705	COG4989	oxidoreductase activity
JJL53_RS09730	COG3437	response regulator, receiver
JJL53_RS09735	COG0583	DNA-binding transcription factor activity
JJL53_RS09745	COG3300	MHYT domain
JJL53_RS09745	COG5001	Diguanylate cyclase
JJL53_RS09750	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JJL53_RS09755	COG0778	Nitroreductase
JJL53_RS09780	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JJL53_RS09785	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JJL53_RS09790	COG0539	negative regulation of cytoplasmic translation
JJL53_RS09795	COG0776	regulation of translation
JJL53_RS09805	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JJL53_RS09825	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JJL53_RS09830	COG0602	queuosine metabolic process
JJL53_RS09835	COG3530	Putative quorum-sensing-regulated virulence factor
JJL53_RS09840	COG2096	Adenosyltransferase
JJL53_RS09850	COG5433	transposase activity
JJL53_RS09855	COG2916	Histone family protein nucleoid-structuring protein H-NS
JJL53_RS09860	COG1757	Na H antiporter
JJL53_RS09865	COG1435	thymidine kinase activity
JJL53_RS09910	COG3385	transposase activity
JJL53_RS09950	COG2226	methyltransferase
JJL53_RS09970	COG3550	peptidyl-serine autophosphorylation
JJL53_RS09995	COG3385	transposase activity
JJL53_RS10080	COG5433	transposase activity
JJL53_RS10085	COG5433	transposase activity
JJL53_RS10095	COG3039	Transposase
JJL53_RS10120	COG0629	single-stranded DNA binding
JJL53_RS10125	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_RS10130	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JJL53_RS10200	COG1104	cysteine desulfurase activity
JJL53_RS10210	COG5433	transposase activity
JJL53_RS10255	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JJL53_RS10260	COG0626	cystathionine gamma-synthase activity
JJL53_RS10270	COG2910	NAD(P)H-binding
JJL53_RS10275	COG5433	transposase activity
JJL53_RS10280	COG0583	DNA-binding transcription factor activity
JJL53_RS10290	COG2207	Transcriptional regulator
JJL53_RS10290	COG3708	Transcriptional regulator
JJL53_RS10295	COG4774	siderophore transport
JJL53_RS10315	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JJL53_RS10320	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JJL53_RS10320	COG0617	tRNA 3'-terminal CCA addition
JJL53_RS10320	COG3620	sequence-specific DNA binding
JJL53_RS10335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_RS10340	COG3046	protein related to deoxyribodipyrimidine photolyase
JJL53_RS10355	COG3088	subunit of a heme lyase
JJL53_RS10355	COG4235	cytochrome complex assembly
JJL53_RS10360	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJL53_RS10365	COG1138	Cytochrome C-type biogenesis protein
JJL53_RS10370	COG3301	Polysulphide reductase, NrfD
JJL53_RS10375	COG0437	4 iron, 4 sulfur cluster binding
JJL53_RS10380	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
JJL53_RS10395	COG0247	lactate metabolic process
JJL53_RS10400	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
JJL53_RS10405	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JJL53_RS10410	COG3012	SEC-C Motif Domain Protein
JJL53_RS10420	COG1846	Transcriptional regulator
JJL53_RS10420	COG1940	carbohydrate kinase activity
JJL53_RS10440	COG4565	transcriptional regulatory protein
JJL53_RS10460	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JJL53_RS10465	COG2985	domain, Protein
JJL53_RS10465	COG0569	domain protein
JJL53_RS10475	COG0556	nucleotide-excision repair
JJL53_RS10485	COG0586	Pfam SNARE associated Golgi protein
JJL53_RS10490	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JJL53_RS10495	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JJL53_RS10505	COG2719	SpoVR family
JJL53_RS10510	COG2718	Belongs to the UPF0229 family
JJL53_RS10515	COG2766	serine protein kinase
JJL53_RS10520	COG0514	ATP-dependent DNA helicase (RecQ)
JJL53_RS10525	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JJL53_RS10530	COG0814	amino acid
JJL53_RS10535	COG5433	transposase activity
JJL53_RS10545	COG5433	transposase activity
JJL53_RS10580	COG0058	SHG alpha-glucan phosphorylase activity
JJL53_RS10590	COG0471	metal ion transport
JJL53_RS10595	COG3118	belongs to the thioredoxin family
JJL53_RS10605	COG1132	(ABC) transporter
JJL53_RS10610	COG1132	(ABC) transporter
JJL53_RS10620	COG5433	transposase activity
JJL53_RS10635	COG2501	S4 domain
JJL53_RS10665	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JJL53_RS10670	COG2329	Antibiotic biosynthesis monooxygenase
JJL53_RS10675	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JJL53_RS10680	COG0673	inositol 2-dehydrogenase activity
JJL53_RS10685	COG0583	DNA-binding transcription factor activity
JJL53_RS10695	COG1560	Kdo2-lipid A biosynthetic process
JJL53_RS10700	COG1560	Kdo2-lipid A biosynthetic process
JJL53_RS10720	COG0417	DNA replication proofreading
JJL53_RS10760	COG0307	riboflavin synthase, alpha
JJL53_RS10770	COG0675	Transposase, IS605 OrfB family
JJL53_RS10780	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_RS10785	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JJL53_RS10790	COG0697	spore germination
JJL53_RS10795	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JJL53_RS10835	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JJL53_RS10840	COG3099	Belongs to the UPF0263 family
JJL53_RS10845	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
JJL53_RS10850	COG2894	cell division
JJL53_RS10855	COG0850	regulation of cytokinetic process
JJL53_RS10860	COG3100	YcgL domain-containing protein
JJL53_RS10865	COG2951	lytic endotransglycosylase activity
JJL53_RS10875	COG1760	l-serine dehydratase
JJL53_RS10880	COG1760	l-serine dehydratase
JJL53_RS10885	COG3123	guanosine phosphorylase activity
JJL53_RS10905	COG2067	long-chain fatty acid transport protein
JJL53_RS10915	COG3012	SEC-C Motif Domain Protein
JJL53_RS10955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS10975	COG2433	Pfam Transposase IS66
JJL53_RS10990	COG2067	long-chain fatty acid transport protein
JJL53_RS10995	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JJL53_RS11000	COG2067	long-chain fatty acid transport protein
JJL53_RS11005	COG2067	long-chain fatty acid transport protein
JJL53_RS11025	COG2304	oxidoreductase activity
JJL53_RS11050	COG0714	Associated with various cellular activities
JJL53_RS11055	COG0183	Belongs to the thiolase family
JJL53_RS11060	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJL53_RS11060	COG1024	Enoyl-CoA hydratase
JJL53_RS11070	COG4681	YaeQ
JJL53_RS11145	COG3134	Outer membrane lipoprotein
JJL53_RS11150	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_RS11155	COG2378	regulation of single-species biofilm formation
JJL53_RS11165	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JJL53_RS11165	COG0140	phosphoribosyl-ATP diphosphatase activity
JJL53_RS11170	COG0107	imidazoleglycerol-phosphate synthase activity
JJL53_RS11175	COG0784	Response regulator, receiver
JJL53_RS11175	COG2205	protein histidine kinase activity
JJL53_RS11175	COG2198	Histidine kinase
JJL53_RS11185	COG3437	response regulator, receiver
JJL53_RS11190	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JJL53_RS11195	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JJL53_RS11205	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JJL53_RS11210	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JJL53_RS11215	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JJL53_RS11225	COG1199	ATP-dependent helicase activity
JJL53_RS11230	COG1214	PFAM Peptidase M22, glycoprotease
JJL53_RS11240	COG0596	Alpha beta hydrolase
JJL53_RS11245	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_RS11250	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JJL53_RS11305	COG3547	Transposase (IS116 IS110 IS902 family)
JJL53_RS11320	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JJL53_RS11330	COG3385	transposase activity
JJL53_RS11345	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JJL53_RS11355	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JJL53_RS11360	COG1335	isochorismatase
JJL53_RS11375	COG3314	Sporulation integral membrane protein YlbJ
JJL53_RS11385	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JJL53_RS11385	COG0517	IMP dehydrogenase activity
JJL53_RS11385	COG0617	tRNA 3'-terminal CCA addition
JJL53_RS11390	COG1643	Atp-dependent helicase
JJL53_RS11400	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JJL53_RS11410	COG3437	response regulator, receiver
JJL53_RS11415	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJL53_RS11420	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
JJL53_RS11425	COG0709	Synthesizes selenophosphate from selenide and ATP
JJL53_RS11435	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JJL53_RS11440	COG0840	transmembrane signaling receptor activity
JJL53_RS11445	COG1254	Belongs to the acylphosphatase family
JJL53_RS11455	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_RS11455	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_RS11460	COG0489	protein tyrosine kinase activity
JJL53_RS11465	COG0572	uridine kinase
JJL53_RS11470	COG0717	Belongs to the dCTP deaminase family
JJL53_RS11475	COG0306	phosphate transporter
JJL53_RS11480	COG4584	PFAM Integrase catalytic
JJL53_RS11500	COG0546	phosphoglycolate phosphatase activity
JJL53_RS11505	COG0424	maF-like protein
JJL53_RS11515	COG1399	metal-binding, possibly nucleic acid-binding protein
JJL53_RS11520	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JJL53_RS11525	COG0416	fatty acid biosynthetic process
JJL53_RS11530	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JJL53_RS11540	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_RS11545	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJL53_RS11555	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JJL53_RS11560	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JJL53_RS11565	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JJL53_RS11570	COG0470	DNA polymerase III
JJL53_RS11575	COG0084	hydrolase, TatD family'
JJL53_RS11595	COG3008	intermembrane lipid transfer
JJL53_RS11600	COG2995	paraquat-inducible protein a
JJL53_RS11610	COG3141	response to X-ray
JJL53_RS11620	COG1067	ATP-dependent peptidase activity
JJL53_RS11625	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJL53_RS11640	COG0488	(ABC) transporter
JJL53_RS11650	COG0116	Belongs to the methyltransferase superfamily
JJL53_RS11650	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JJL53_RS11660	COG0167	dihydroorotate dehydrogenase activity
JJL53_RS11665	COG2902	Dehydrogenase
JJL53_RS11675	COG0308	aminopeptidase N
JJL53_RS11685	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
JJL53_RS11690	COG1956	GAF domain-containing protein
JJL53_RS11700	COG3278	Belongs to the heme-copper respiratory oxidase family
JJL53_RS11715	COG2010	Cytochrome c
JJL53_RS11740	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJL53_RS11745	COG0589	response to stress
JJL53_RS11750	COG0037	tRNA processing
JJL53_RS11765	COG0625	glutathione transferase activity
JJL53_RS11770	COG1869	D-ribose catabolic process
JJL53_RS11775	COG1129	ABC transporter
JJL53_RS11780	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_RS11785	COG1879	ABC-type sugar transport system periplasmic component
JJL53_RS11790	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_RS11795	COG1609	Transcriptional regulator
JJL53_RS11800	COG3300	MHYT domain
JJL53_RS11800	COG5001	Diguanylate cyclase
JJL53_RS11825	COG0784	Response regulator, receiver
JJL53_RS11825	COG2205	protein histidine kinase activity
JJL53_RS11830	COG0776	regulation of translation
JJL53_RS11835	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_RS11835	COG0072	phenylalanine-tRNA ligase activity
JJL53_RS11840	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JJL53_RS11845	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JJL53_RS11850	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JJL53_RS11855	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JJL53_RS11860	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JJL53_RS11890	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JJL53_RS11900	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JJL53_RS11910	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJL53_RS11915	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JJL53_RS11920	COG3313	Fe-S protein
JJL53_RS11925	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JJL53_RS11925	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_RS11925	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_RS11930	COG1105	Belongs to the carbohydrate kinase PfkB family
JJL53_RS11935	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_RS11935	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_RS11940	COG1609	Transcriptional regulator
JJL53_RS11945	COG0814	amino acid
JJL53_RS11950	COG3788	relative of glutathione S-transferase, MAPEG superfamily
JJL53_RS11955	COG0513	Belongs to the DEAD box helicase family
JJL53_RS11965	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JJL53_RS11970	COG2890	protein-(glutamine-N5) methyltransferase activity
JJL53_RS11975	COG2840	Smr protein MutS2
JJL53_RS11985	COG0406	alpha-ribazole phosphatase activity
JJL53_RS12015	COG2824	Alkylphosphonate utilization operon protein PhnA
JJL53_RS12020	COG1280	lysine exporter protein (LysE YggA)
JJL53_RS12065	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JJL53_RS12070	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
JJL53_RS12080	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JJL53_RS12085	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JJL53_RS12095	COG0205	6-phosphofructokinase activity
JJL53_RS12100	COG1473	amidohydrolase
JJL53_RS12105	COG1011	Hydrolase
JJL53_RS12110	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJL53_RS12165	COG3593	DNA synthesis involved in DNA repair
JJL53_RS12180	COG0583	DNA-binding transcription factor activity
JJL53_RS12185	COG0730	response to heat
JJL53_RS12190	COG3148	PFAM DTW domain containing protein
JJL53_RS12200	COG1181	Belongs to the D-alanine--D-alanine ligase family
JJL53_RS12210	COG0386	Belongs to the glutathione peroxidase family
JJL53_RS12215	COG0513	Belongs to the DEAD box helicase family
JJL53_RS12225	COG1742	UPF0060 membrane protein
JJL53_RS12260	COG1129	ABC transporter
JJL53_RS12265	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_RS12270	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_RS12290	COG5433	transposase activity
JJL53_RS12300	COG3385	transposase activity
JJL53_RS12330	COG2003	Belongs to the UPF0758 family
JJL53_RS12355	COG3385	transposase activity
JJL53_RS12380	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JJL53_RS12400	COG0730	response to heat
JJL53_RS12410	COG3385	transposase activity
JJL53_RS12415	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_RS12425	COG1024	Enoyl-CoA hydratase
JJL53_RS12430	COG1024	Enoyl-CoA hydratase
JJL53_RS12435	COG1960	acyl-CoA dehydrogenase activity
JJL53_RS12445	COG1960	acyl-CoA dehydrogenase activity
JJL53_RS12450	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJL53_RS12455	COG1024	Enoyl-CoA hydratase
JJL53_RS12480	COG1584	GPR1 FUN34 yaaH family protein
JJL53_RS12495	COG1115	amino acid carrier protein
JJL53_RS12500	COG1024	Enoyl-CoA hydratase
JJL53_RS12515	COG3162	membrane
JJL53_RS12520	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JJL53_RS12525	COG0488	(ABC) transporter
JJL53_RS12530	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JJL53_RS12535	COG0776	regulation of translation
JJL53_RS12540	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JJL53_RS12545	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JJL53_RS12550	COG0740	serine-type endopeptidase activity
JJL53_RS12555	COG0544	peptidyl-prolyl cis-trans isomerase activity
JJL53_RS12565	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
JJL53_RS12570	COG4591	ABC-type transport system involved in lipoprotein release permease component
JJL53_RS12575	COG1136	(ABC) transporter
JJL53_RS12580	COG4591	ABC-type transport system involved in lipoprotein release permease component
JJL53_RS12590	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JJL53_RS12595	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
JJL53_RS12600	COG4166	transmembrane transport
JJL53_RS12605	COG3385	transposase activity
JJL53_RS12610	COG0697	spore germination
JJL53_RS12620	COG2062	phosphohistidine phosphatase, SixA
JJL53_RS12650	COG3385	transposase activity
JJL53_RS12655	COG0519	Catalyzes the synthesis of GMP from XMP
JJL53_RS12655	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JJL53_RS12660	COG0517	IMP dehydrogenase activity
JJL53_RS12660	COG0516	GMP reductase activity
JJL53_RS12670	COG1874	Beta-galactosidase
JJL53_RS12670	COG0366	Alpha amylase catalytic
JJL53_RS12680	COG1570	exodeoxyribonuclease VII activity
JJL53_RS12700	COG2885	chlorophyll binding
JJL53_RS12735	COG2154	pterin-4-alpha-carbinolamine dehydratase
JJL53_RS12745	COG3768	UPF0283 membrane protein
JJL53_RS12750	COG3106	COG3106 Predicted ATPase
JJL53_RS12765	COG1842	Phage shock protein A
JJL53_RS12770	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JJL53_RS12780	COG4168	peptide transport system, permease
JJL53_RS12785	COG4171	peptide transport system, permease
JJL53_RS12795	COG4172	Belongs to the ABC transporter superfamily
JJL53_RS12805	COG1609	Transcriptional regulator
JJL53_RS12810	COG1263	PTS System
JJL53_RS12810	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_RS12815	COG2723	6-phospho-beta-galactosidase activity
JJL53_RS12820	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JJL53_RS12825	COG1286	toxin biosynthetic process
JJL53_RS12830	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JJL53_RS12835	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JJL53_RS12840	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JJL53_RS12845	COG1674	ftsk spoiiie
JJL53_RS12845	COG0531	amino acid
JJL53_RS12855	COG0686	Belongs to the AlaDH PNT family
JJL53_RS12860	COG0492	ferredoxin-NADP+ reductase activity
JJL53_RS12865	COG3706	GGDEF domain
JJL53_RS12870	COG3134	Outer membrane lipoprotein
JJL53_RS12875	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JJL53_RS12880	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JJL53_RS12885	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JJL53_RS12890	COG0542	response to heat
JJL53_RS12895	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JJL53_RS12900	COG1278	Cold shock
JJL53_RS12905	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JJL53_RS12925	COG1944	ATP diphosphatase activity
JJL53_RS12930	COG2116	formate transmembrane transporter activity
JJL53_RS12935	COG1882	Formate acetyltransferase
JJL53_RS12940	COG2983	Belongs to the UPF0260 family
JJL53_RS12955	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JJL53_RS12960	COG0045	succinate-CoA ligase (ADP-forming) activity
JJL53_RS12965	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJL53_RS12970	COG0567	Dehydrogenase, E1 component
JJL53_RS12980	COG1053	succinate dehydrogenase
JJL53_RS12985	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JJL53_RS13010	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJL53_RS13015	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
JJL53_RS13015	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_RS13045	COG5433	transposase activity
JJL53_RS13055	COG2026	Addiction module toxin, RelE StbE family
JJL53_RS13060	COG3077	Addiction module antitoxin, RelB DinJ family
JJL53_RS13120	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
JJL53_RS13135	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_RS13140	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_RS13145	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_RS13145	COG0649	NAD binding
JJL53_RS13160	COG1034	ATP synthesis coupled electron transport
JJL53_RS13165	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JJL53_RS13170	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_RS13175	COG0839	Belongs to the complex I subunit 6 family
JJL53_RS13180	COG0713	ATP synthesis coupled electron transport
JJL53_RS13190	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_RS13195	COG1007	ATP synthesis coupled electron transport
JJL53_RS13200	COG0047	phosphoribosylformylglycinamidine synthase activity
JJL53_RS13200	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JJL53_RS13205	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JJL53_RS13215	COG1160	GTP binding
JJL53_RS13220	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJL53_RS13225	COG2976	Protein conserved in bacteria
JJL53_RS13230	COG0124	histidyl-tRNA synthetase
JJL53_RS13250	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JJL53_RS13255	COG0105	UTP biosynthetic process
JJL53_RS13260	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJL53_RS13270	COG0633	Ferredoxin
JJL53_RS13275	COG0443	Heat shock 70 kDa protein
JJL53_RS13280	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JJL53_RS13290	COG0822	iron-sulfur transferase activity
JJL53_RS13295	COG1104	cysteine desulfurase activity
JJL53_RS13315	COG3154	lipid carrier protein
JJL53_RS13335	COG0826	peptidase U32
JJL53_RS13350	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_RS13355	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_RS13360	COG1862	Preprotein translocase
JJL53_RS13365	COG0343	queuine tRNA-ribosyltransferase activity
JJL53_RS13370	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JJL53_RS13375	COG0517	IMP dehydrogenase activity
JJL53_RS13385	COG3634	alkyl hydroperoxide reductase activity
JJL53_RS13425	COG3385	transposase activity
JJL53_RS13430	COG5433	transposase activity
JJL53_RS13455	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JJL53_RS13455	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JJL53_RS13460	COG0509	glycine decarboxylation via glycine cleavage system
JJL53_RS13465	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JJL53_RS13470	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJL53_RS13475	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJL53_RS13495	COG2814	Major facilitator Superfamily
JJL53_RS13515	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_RS13520	COG0601	transmembrane transport
JJL53_RS13530	COG0625	glutathione transferase activity
JJL53_RS13545	COG0483	inositol monophosphate 1-phosphatase activity
JJL53_RS13575	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJL53_RS13580	COG2056	Na+-H+ antiporter family
JJL53_RS13585	COG2814	Major facilitator Superfamily
JJL53_RS13590	COG0583	DNA-binding transcription factor activity
JJL53_RS13595	COG0513	Belongs to the DEAD box helicase family
JJL53_RS13600	COG2050	protein possibly involved in aromatic compounds catabolism
JJL53_RS13610	COG0277	FAD linked oxidase domain protein
JJL53_RS13610	COG0247	lactate metabolic process
JJL53_RS13620	COG1253	flavin adenine dinucleotide binding
JJL53_RS13625	COG1902	pentaerythritol trinitrate reductase activity
JJL53_RS13630	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JJL53_RS13635	COG0647	UMP catabolic process
JJL53_RS13645	COG0367	asparagine synthase
JJL53_RS13655	COG0625	glutathione transferase activity
JJL53_RS13665	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JJL53_RS13680	COG0564	pseudouridine synthase activity
JJL53_RS13685	COG3706	GGDEF domain
JJL53_RS13695	COG0840	transmembrane signaling receptor activity
JJL53_RS13700	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_RS13730	COG4447	cellulose binding
JJL53_RS13755	COG2855	membrane
JJL53_RS13765	COG2814	Major facilitator Superfamily
JJL53_RS13770	COG3246	L-lysine catabolic process to acetate
JJL53_RS13775	COG2175	clavaminate synthase activity
JJL53_RS13785	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JJL53_RS13810	COG0670	Belongs to the BI1 family
JJL53_RS13815	COG1289	transmembrane transporter activity
JJL53_RS13820	COG2920	part of a sulfur-relay system
JJL53_RS13825	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JJL53_RS13830	COG0285	dihydrofolate synthase activity
JJL53_RS13835	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JJL53_RS13840	COG0101	tRNA pseudouridine synthase activity
JJL53_RS13850	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JJL53_RS13855	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJL53_RS13860	COG0671	phosphoesterase, PA-phosphatase related
JJL53_RS13865	COG1464	Belongs to the NlpA lipoprotein family
JJL53_RS13885	COG1119	ATPase activity
JJL53_RS13890	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JJL53_RS13890	COG0574	Belongs to the PEP-utilizing enzyme family
JJL53_RS13895	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JJL53_RS13905	COG1113	amino acid transport
JJL53_RS13985	COG4584	PFAM Integrase catalytic
JJL53_RS13990	COG1484	DNA-dependent DNA replication
JJL53_RS14000	COG1242	4 iron, 4 sulfur cluster binding
JJL53_RS14005	COG3385	transposase activity
JJL53_RS14010	COG0070	glutamate synthase
JJL53_RS14010	COG0069	glutamate synthase activity
JJL53_RS14010	COG0067	glutamate synthase
JJL53_RS14015	COG0493	'glutamate synthase
JJL53_RS14020	COG1126	abc transporter atp-binding protein
JJL53_RS14030	COG3385	transposase activity
JJL53_RS14045	COG5433	transposase activity
JJL53_RS14065	COG4104	PAAR repeat-containing protein
JJL53_RS14075	COG0513	Belongs to the DEAD box helicase family
JJL53_RS14110	COG5433	transposase activity
JJL53_RS14120	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JJL53_RS14125	COG0505	Belongs to the CarA family
JJL53_RS14130	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JJL53_RS14140	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JJL53_RS14145	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JJL53_RS14150	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJL53_RS14155	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JJL53_RS14160	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_RS14165	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
JJL53_RS14215	COG2119	membrane
JJL53_RS14275	COG3039	Transposase
JJL53_RS14290	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JJL53_RS14300	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_RS14310	COG0625	glutathione transferase activity
JJL53_RS14355	COG3436	PFAM IS66 Orf2 family protein
JJL53_RS14360	COG4372	Transposase
JJL53_RS14410	COG0322	excinuclease ABC activity
JJL53_RS14415	COG2197	response regulator
JJL53_RS14420	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JJL53_RS14425	COG2835	tetraacyldisaccharide 4'-kinase activity
JJL53_RS14430	COG1663	tetraacyldisaccharide 4'-kinase activity
JJL53_RS14435	COG1132	(ABC) transporter
JJL53_RS14455	COG0433	COG0433 Predicted ATPase
JJL53_RS14460	COG1448	Aminotransferase
JJL53_RS14475	COG1199	ATP-dependent helicase activity
JJL53_RS14485	COG0123	including yeast histone deacetylase and acetoin utilization protein
JJL53_RS14490	COG0477	Major facilitator Superfamily
JJL53_RS14495	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JJL53_RS14520	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JJL53_RS14525	COG2197	response regulator
JJL53_RS14535	COG2271	Major facilitator Superfamily
JJL53_RS14545	COG0675	Transposase, IS605 OrfB family
JJL53_RS14560	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_RS14565	COG0765	amino acid transport
JJL53_RS14570	COG1126	abc transporter atp-binding protein
JJL53_RS14585	COG3385	transposase activity
JJL53_RS14590	COG0531	amino acid
JJL53_RS14605	COG1253	flavin adenine dinucleotide binding
JJL53_RS14615	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JJL53_RS14620	COG0581	inorganic phosphate transmembrane transporter activity
JJL53_RS14625	COG0573	inorganic phosphate transmembrane transporter activity
JJL53_RS14645	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JJL53_RS14665	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JJL53_RS14670	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JJL53_RS14675	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JJL53_RS14690	COG3385	transposase activity
JJL53_RS14715	COG2716	regulation of RNA biosynthetic process
JJL53_RS14720	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JJL53_RS14735	COG0675	Transposase, IS605 OrfB family
JJL53_RS14770	COG1705	Flagellar rod assembly protein muramidase FlgJ
JJL53_RS14770	COG3951	Flagellar rod assembly protein muramidase FlgJ
JJL53_RS14775	COG1706	bacterial-type flagellum-dependent cell motility
JJL53_RS14810	COG1815	bacterial-type flagellum-dependent cell motility
JJL53_RS14815	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JJL53_RS14820	COG0835	chemotaxis
JJL53_RS14820	COG0784	Response regulator, receiver
JJL53_RS14825	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
JJL53_RS14840	COG0622	Phosphoesterase
JJL53_RS14845	COG4166	transmembrane transport
JJL53_RS14855	COG1187	pseudouridine synthase activity
JJL53_RS14870	COG0697	spore germination
JJL53_RS14900	COG1278	Cold shock
JJL53_RS14930	COG2988	succinylglutamate desuccinylase activity
JJL53_RS14950	COG3132	Protein of unknown function, DUF480
JJL53_RS14965	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JJL53_RS14970	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JJL53_RS14995	COG1215	transferase activity, transferring glycosyl groups
JJL53_RS15040	COG1091	dTDP-4-dehydrorhamnose reductase activity
JJL53_RS15055	COG5433	transposase activity
JJL53_RS15095	COG3547	Transposase (IS116 IS110 IS902 family)
JJL53_RS15115	COG1737	Transcriptional regulator
JJL53_RS15120	COG0469	pyruvate kinase activity
JJL53_RS15130	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_RS15135	COG1960	acyl-CoA dehydrogenase activity
JJL53_RS15145	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JJL53_RS15175	COG3385	transposase activity
JJL53_RS15220	COG4372	Transposase
JJL53_RS15240	COG3657	addiction module killer protein
JJL53_RS15255	COG3328	transposase activity
JJL53_RS15270	COG1484	DNA-dependent DNA replication
JJL53_RS15275	COG4584	PFAM Integrase catalytic
JJL53_RS15315	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_RS15320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS15325	COG1309	transcriptional regulator
JJL53_RS15340	COG1946	Acyl-CoA thioesterase
JJL53_RS15350	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JJL53_RS15360	COG0009	L-threonylcarbamoyladenylate synthase
JJL53_RS15370	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JJL53_RS15375	COG0512	Glutamine amidotransferase of anthranilate synthase
JJL53_RS15375	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JJL53_RS15380	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JJL53_RS15385	COG0135	phosphoribosylanthranilate isomerase activity
JJL53_RS15385	COG0134	indole-3-glycerol-phosphate synthase activity
JJL53_RS15390	COG0133	tryptophan synthase activity
JJL53_RS15395	COG0159	tryptophan synthase activity
JJL53_RS15425	COG5507	3-demethylubiquinone-9 3-methyltransferase
JJL53_RS15430	COG2814	Major facilitator Superfamily
JJL53_RS15435	COG0109	protoheme IX farnesyltransferase activity
JJL53_RS15440	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JJL53_RS15445	COG1845	cytochrome c oxidase, subunit III
JJL53_RS15465	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JJL53_RS15470	COG5433	transposase activity
JJL53_RS15480	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJL53_RS15485	COG0583	DNA-binding transcription factor activity
JJL53_RS15520	COG0071	Belongs to the small heat shock protein (HSP20) family
JJL53_RS15545	COG0708	Exodeoxyribonuclease III
JJL53_RS15555	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS15560	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_RS15575	COG0675	Transposase, IS605 OrfB family
JJL53_RS15590	COG0095	Lipoate-protein ligase
JJL53_RS15635	COG1285	pathogenesis
JJL53_RS15665	COG0484	heat shock protein binding
JJL53_RS15670	COG0443	Heat shock 70 kDa protein
JJL53_RS15675	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JJL53_RS15680	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JJL53_RS15685	COG3706	GGDEF domain
JJL53_RS15690	COG0497	DNA recombination
JJL53_RS15695	COG1227	inorganic diphosphatase activity
JJL53_RS15705	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS15710	COG0577	efflux transmembrane transporter activity
JJL53_RS15710	COG1136	(ABC) transporter
JJL53_RS15720	COG2375	cellular response to nickel ion
JJL53_RS15725	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_RS15730	COG2916	Histone family protein nucleoid-structuring protein H-NS
JJL53_RS15735	COG0583	DNA-binding transcription factor activity
JJL53_RS15740	COG2610	gluconate transmembrane transporter activity
JJL53_RS15745	COG3048	D-serine ammonia-lyase activity
JJL53_RS15755	COG0538	isocitrate dehydrogenase activity
JJL53_RS15760	COG2207	Transcriptional regulator
JJL53_RS15765	COG1482	cell wall glycoprotein biosynthetic process
JJL53_RS15780	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_RS15785	COG4932	domain protein
JJL53_RS15785	COG5492	domain, Protein
JJL53_RS15805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_RS15805	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_RS15805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_RS15815	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_RS15840	COG0482	sulfurtransferase activity
JJL53_RS15845	COG2915	High frequency lysogenization protein hflD homolog
JJL53_RS15850	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JJL53_RS15855	COG2850	peptidyl-arginine hydroxylation
JJL53_RS15860	COG0469	pyruvate kinase activity
JJL53_RS15865	COG1196	nuclear chromosome segregation
JJL53_RS15865	COG3264	Mechanosensitive ion channel
JJL53_RS15880	COG1472	Belongs to the glycosyl hydrolase 3 family
JJL53_RS15885	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_RS15890	COG1129	ABC transporter
JJL53_RS15900	COG5433	transposase activity
JJL53_RS15935	COG0281	malic enzyme
JJL53_RS15940	COG0746	molybdenum cofactor guanylyltransferase activity
JJL53_RS15945	COG1763	Mo-molybdopterin cofactor biosynthetic process
JJL53_RS15950	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JJL53_RS15995	COG1943	Transposase
JJL53_RS16015	COG1484	DNA-dependent DNA replication
JJL53_RS16020	COG4584	PFAM Integrase catalytic
JJL53_RS16035	COG4319	ketosteroid isomerase
JJL53_RS16040	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JJL53_RS16045	COG0083	homoserine kinase activity
JJL53_RS16055	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
JJL53_RS16060	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
JJL53_RS16075	COG0259	pyridoxamine-phosphate oxidase activity
JJL53_RS16080	COG3385	transposase activity
JJL53_RS16095	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JJL53_RS16095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJL53_RS16100	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JJL53_RS16120	COG3088	subunit of a heme lyase
JJL53_RS16120	COG4235	cytochrome complex assembly
JJL53_RS16125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJL53_RS16130	COG1138	Cytochrome C-type biogenesis protein
JJL53_RS16135	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JJL53_RS16140	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJL53_RS16145	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJL53_RS16150	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJL53_RS16165	COG0835	chemotaxis
JJL53_RS16175	COG1192	Involved in chromosome partitioning
JJL53_RS16180	COG1360	Flagellar Motor Protein
JJL53_RS16185	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JJL53_RS16190	COG2201	protein-glutamate methylesterase activity
JJL53_RS16195	COG2198	Histidine kinase
JJL53_RS16195	COG0784	Response regulator, receiver
JJL53_RS16195	COG0643	Histidine kinase
JJL53_RS16240	COG1309	transcriptional regulator
JJL53_RS16255	COG1136	(ABC) transporter
JJL53_RS16270	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JJL53_RS16285	COG3039	Transposase
JJL53_RS16335	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JJL53_RS16345	COG1073	alpha beta
JJL53_RS16345	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
JJL53_RS16345	COG3064	Membrane
JJL53_RS16365	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_RS16370	COG0444	Belongs to the ABC transporter superfamily
JJL53_RS16375	COG4608	Belongs to the ABC transporter superfamily
JJL53_RS16385	COG2971	BadF BadG BcrA BcrD
JJL53_RS16395	COG0840	transmembrane signaling receptor activity
JJL53_RS16415	COG3724	N-succinylarginine dihydrolase activity
JJL53_RS16420	COG0616	signal peptide processing
JJL53_RS16425	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_RS16430	COG0583	DNA-binding transcription factor activity
JJL53_RS16440	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JJL53_RS16450	COG0583	DNA-binding transcription factor activity
JJL53_RS16455	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JJL53_RS16465	COG3408	Glycogen debranching enzyme
JJL53_RS16465	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
JJL53_RS16475	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JJL53_RS16480	COG0739	heme binding
JJL53_RS16485	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
JJL53_RS16510	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JJL53_RS16520	COG3091	SprT-like family
JJL53_RS16530	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JJL53_RS16535	COG0189	ligase activity
JJL53_RS16545	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JJL53_RS16565	COG1115	amino acid carrier protein
JJL53_RS16570	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JJL53_RS16590	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JJL53_RS16610	COG5433	transposase activity
JJL53_RS16625	COG2912	Transglutaminase-like superfamily
JJL53_RS16635	COG2890	protein-(glutamine-N5) methyltransferase activity
JJL53_RS16640	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JJL53_RS16645	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
JJL53_RS16650	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
JJL53_RS16655	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JJL53_RS16665	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JJL53_RS16685	COG0193	aminoacyl-tRNA hydrolase activity
JJL53_RS16690	COG0012	GTP binding
JJL53_RS16735	COG0471	metal ion transport
JJL53_RS16735	COG0490	domain, Protein
JJL53_RS16745	COG0657	acetylesterase activity
JJL53_RS16760	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_RS16770	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_RS16780	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JJL53_RS16795	COG0180	Tryptophanyl-tRNA synthetase
JJL53_RS16805	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JJL53_RS16810	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JJL53_RS16820	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JJL53_RS16825	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JJL53_RS16865	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JJL53_RS16870	COG0583	DNA-binding transcription factor activity
JJL53_RS16885	COG0583	DNA-binding transcription factor activity
JJL53_RS16900	COG3121	Chaperone
JJL53_RS16905	COG3188	usher protein
JJL53_RS16910	COG3121	Chaperone
JJL53_RS16920	COG0739	heme binding
JJL53_RS16925	COG3385	transposase activity
JJL53_RS16935	COG3264	Mechanosensitive ion channel
JJL53_RS16935	COG1511	domain protein
JJL53_RS16940	COG0584	glycerophosphoryl diester phosphodiesterase
JJL53_RS16950	COG1053	succinate dehydrogenase
JJL53_RS16955	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JJL53_RS16960	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
JJL53_RS16970	COG3214	Protein conserved in bacteria
JJL53_RS16975	COG4106	trans-aconitate 2-methyltransferase activity
JJL53_RS16995	COG0300	oxidoreductase activity
JJL53_RS17010	COG0642	Histidine kinase
JJL53_RS17025	COG0516	GMP reductase activity
JJL53_RS17035	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JJL53_RS17040	COG3647	Membrane
JJL53_RS17050	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJL53_RS17060	COG3706	GGDEF domain
JJL53_RS17085	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_RS17095	COG0583	DNA-binding transcription factor activity
JJL53_RS17100	COG1278	Cold shock
JJL53_RS17105	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJL53_RS17110	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JJL53_RS17115	COG1702	phosphate starvation-inducible protein PhoH
JJL53_RS17120	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JJL53_RS17125	COG4535	Mg2 and Co2 transporter CorC
JJL53_RS17130	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JJL53_RS17135	COG2888	peptidyl-tyrosine sulfation
JJL53_RS17140	COG0495	leucyl-tRNA aminoacylation
JJL53_RS17155	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JJL53_RS17160	COG0799	negative regulation of ribosome biogenesis
JJL53_RS17165	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JJL53_RS17170	COG0768	penicillin binding
JJL53_RS17175	COG0772	Belongs to the SEDS family
JJL53_RS17180	COG2951	lytic endotransglycosylase activity
JJL53_RS17185	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JJL53_RS17190	COG1686	Belongs to the peptidase S11 family
JJL53_RS17195	COG2921	Belongs to the UPF0250 family
JJL53_RS17200	COG0321	lipoyl(octanoyl) transferase activity
JJL53_RS17205	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JJL53_RS17215	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_RS17225	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JJL53_RS17240	COG1970	mechanosensitive ion channel activity
JJL53_RS17250	COG4974	Belongs to the 'phage' integrase family
JJL53_RS17265	COG0312	modulator of DNA gyrase
JJL53_RS17280	COG0826	peptidase U32
JJL53_RS17285	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JJL53_RS17300	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JJL53_RS17310	COG1185	polyribonucleotide nucleotidyltransferase activity
JJL53_RS17315	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JJL53_RS17320	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JJL53_RS17325	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JJL53_RS17330	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JJL53_RS17335	COG0195	Participates in both transcription termination and antitermination
JJL53_RS17340	COG0779	Required for maturation of 30S ribosomal subunits
JJL53_RS17355	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JJL53_RS17360	COG0149	triose-phosphate isomerase activity
JJL53_RS17365	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JJL53_RS17370	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JJL53_RS17380	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JJL53_RS17385	COG1534	Rna-binding protein
JJL53_RS17400	COG1360	Flagellar Motor Protein
JJL53_RS17405	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JJL53_RS17410	COG1722	exodeoxyribonuclease VII activity
JJL53_RS17415	COG0142	geranyltranstransferase activity
JJL53_RS17420	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JJL53_RS17425	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_RS17430	COG0601	transmembrane transport
JJL53_RS17440	COG4172	Belongs to the ABC transporter superfamily
JJL53_RS17445	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JJL53_RS17450	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JJL53_RS17455	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJL53_RS17460	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JJL53_RS17475	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JJL53_RS17475	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JJL53_RS17480	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JJL53_RS17495	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JJL53_RS17505	COG2205	protein histidine kinase activity
JJL53_RS17505	COG0784	Response regulator, receiver
JJL53_RS17505	COG2198	Histidine kinase
JJL53_RS17510	COG1879	ABC-type sugar transport system periplasmic component
JJL53_RS17520	COG0745	RESPONSE REGULATOR receiver
JJL53_RS17525	COG3005	denitrification pathway
JJL53_RS17535	COG3381	protein complex oligomerization
JJL53_RS17550	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJL53_RS17555	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JJL53_RS17560	COG0511	ligase activity, forming carbon-carbon bonds
JJL53_RS17565	COG0439	Biotin carboxylase
JJL53_RS17570	COG3924	membrane
JJL53_RS17575	COG4145	pantothenate transmembrane transporter activity
JJL53_RS17580	COG1263	PTS System
JJL53_RS17580	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_RS17580	COG2190	(PTS) system
JJL53_RS17585	COG0583	DNA-binding transcription factor activity
JJL53_RS17595	COG2264	protein methyltransferase activity
JJL53_RS17610	COG0778	Nitroreductase
JJL53_RS17615	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_RS17615	COG1902	pentaerythritol trinitrate reductase activity
JJL53_RS17620	COG0616	signal peptide processing
JJL53_RS17640	COG3139	Protein of unknown function (DUF1315)
JJL53_RS17645	COG0252	asparaginase activity
JJL53_RS17650	COG0786	glutamate:sodium symporter activity
JJL53_RS17655	COG5001	Diguanylate cyclase
JJL53_RS17670	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JJL53_RS17675	COG0384	phenazine biosynthesis protein PhzF
JJL53_RS17680	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JJL53_RS17685	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_RS17690	COG0175	sulfate reduction
JJL53_RS17695	COG2113	Glycine betaine
JJL53_RS17700	COG4176	ABC-type proline glycine betaine transport system permease component
JJL53_RS17705	COG4175	Glycine betaine
JJL53_RS17715	COG3610	response to peptide
JJL53_RS17720	COG2966	Psort location CytoplasmicMembrane, score
JJL53_RS17735	COG3385	transposase activity
JJL53_RS17755	COG0521	Mo-molybdopterin cofactor biosynthetic process
JJL53_RS17765	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJL53_RS17770	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_RS17780	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJL53_RS17805	COG2986	histidine ammonia-lyase
JJL53_RS17830	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJL53_RS17835	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJL53_RS17850	COG3385	transposase activity
JJL53_RS17890	COG5433	transposase activity
JJL53_RS17900	COG2313	pseudouridylate synthase activity
JJL53_RS17905	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_RS17910	COG2146	nitrite reductase [NAD(P)H] activity
JJL53_RS17910	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_RS17915	COG2146	nitrite reductase [NAD(P)H] activity
JJL53_RS17915	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_RS17920	COG1116	anion transmembrane transporter activity
JJL53_RS17925	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJL53_RS17930	COG1116	anion transmembrane transporter activity
JJL53_RS17930	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JJL53_RS17950	COG0243	molybdopterin cofactor binding
JJL53_RS17975	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JJL53_RS17990	COG1073	alpha beta
JJL53_RS17995	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
JJL53_RS18000	COG2195	Cleaves the N-terminal amino acid of tripeptides
JJL53_RS18005	COG4608	Belongs to the ABC transporter superfamily
JJL53_RS18010	COG0444	Belongs to the ABC transporter superfamily
JJL53_RS18015	COG0747	negative chemotaxis
JJL53_RS18020	COG4239	(ABC) transporter, permease
JJL53_RS18025	COG4174	ABC transporter (Permease)
JJL53_RS18030	COG5433	transposase activity
JJL53_RS18035	COG4206	TonB-dependent receptor
JJL53_RS18045	COG0811	peptide transport
JJL53_RS18050	COG0811	peptide transport
JJL53_RS18055	COG0848	biopolymer transport protein
JJL53_RS18100	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_RS18105	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_RS18110	COG0840	transmembrane signaling receptor activity
JJL53_RS18120	COG1278	Cold shock
JJL53_RS18155	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JJL53_RS18165	COG0688	phosphatidylethanolamine metabolic process
JJL53_RS18170	COG4628	conserved protein (DUF2132)
JJL53_RS18185	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJL53_RS18220	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
JJL53_RS18230	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJL53_RS18240	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JJL53_RS18245	COG2017	converts alpha-aldose to the beta-anomer
JJL53_RS18255	COG1609	Transcriptional regulator
JJL53_RS18265	COG3039	Transposase
JJL53_RS18270	COG1342	Belongs to the UPF0251 family
JJL53_RS18295	COG5433	transposase activity
JJL53_RS18360	COG4974	Belongs to the 'phage' integrase family
JJL53_RS18370	COG0582	viral genome integration into host DNA
JJL53_RS18395	COG1132	(ABC) transporter
JJL53_RS18410	COG2897	thiosulfate sulfurtransferase activity
JJL53_RS18430	COG3385	transposase activity
JJL53_RS18440	COG3171	Protein conserved in bacteria
JJL53_RS18445	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JJL53_RS18450	COG4935	Belongs to the peptidase S8 family
JJL53_RS18450	COG2234	aminopeptidase activity
JJL53_RS18455	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJL53_RS18460	COG2200	EAL domain
JJL53_RS18465	COG1090	epimerase
JJL53_RS18470	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JJL53_RS18475	COG4181	ATPase activity
JJL53_RS18480	COG2755	lipolytic protein G-D-S-L family
JJL53_RS18495	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JJL53_RS18500	COG3039	Transposase
JJL53_RS18510	COG0517	IMP dehydrogenase activity
JJL53_RS18515	COG0488	(ABC) transporter
JJL53_RS18525	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JJL53_RS18550	COG3039	Transposase
JJL53_RS18560	COG5433	transposase activity
JJL53_RS18575	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JJL53_RS18580	COG1376	ErfK ybiS ycfS ynhG family protein
JJL53_RS18585	COG0668	transmembrane transport
JJL53_RS18595	COG2731	YhcH YjgK YiaL family protein
JJL53_RS18610	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JJL53_RS18625	COG5433	transposase activity
JJL53_RS18635	COG5433	transposase activity
JJL53_RS18640	COG0477	Major facilitator Superfamily
JJL53_RS18660	COG0569	domain protein
JJL53_RS18660	COG2985	domain, Protein
JJL53_RS18665	COG1272	protein, Hemolysin III
JJL53_RS18670	COG0076	glutamate decarboxylase activity
JJL53_RS18675	COG2917	probably involved in intracellular septation
JJL53_RS18680	COG2350	Protein conserved in bacteria
JJL53_RS18690	COG1555	photosystem II stabilization
JJL53_RS18695	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JJL53_RS18700	COG3385	transposase activity
JJL53_RS18705	COG3104	oligopeptide transport
JJL53_RS18710	COG0745	RESPONSE REGULATOR receiver
JJL53_RS18740	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS18750	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JJL53_RS18755	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
JJL53_RS18790	COG0316	Belongs to the HesB IscA family
JJL53_RS18800	COG0038	chloride channel
JJL53_RS18805	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JJL53_RS18825	COG0671	phosphoesterase, PA-phosphatase related
JJL53_RS18835	COG0583	DNA-binding transcription factor activity
JJL53_RS18840	COG2076	Multidrug Resistance protein
JJL53_RS18850	COG0346	lactoylglutathione lyase activity
JJL53_RS18855	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JJL53_RS18860	COG1643	Atp-dependent helicase
JJL53_RS18865	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JJL53_RS18870	COG1489	DNA binding
JJL53_RS18875	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JJL53_RS18880	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_RS18885	COG0617	tRNA 3'-terminal CCA addition
JJL53_RS18895	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JJL53_RS18900	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JJL53_RS18910	COG0842	Transport permease protein
JJL53_RS18915	COG1131	(ABC) transporter
JJL53_RS18930	COG0163	prenyltransferase activity
JJL53_RS18935	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JJL53_RS18940	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JJL53_RS18955	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JJL53_RS18990	COG0840	transmembrane signaling receptor activity
JJL53_RS19000	COG3385	transposase activity
JJL53_RS19010	COG0529	Catalyzes the synthesis of activated sulfate
JJL53_RS19015	COG0471	metal ion transport
JJL53_RS19015	COG3273	potassium ion transport
JJL53_RS19020	COG2895	sulfate adenylyltransferase (ATP) activity
JJL53_RS19025	COG0175	sulfate reduction
JJL53_RS19030	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JJL53_RS19030	COG1648	precorrin-2 dehydrogenase activity
JJL53_RS19035	COG0330	HflC and HflK could
JJL53_RS19040	COG1585	Membrane protein implicated in regulation of membrane protease activity
JJL53_RS19055	COG0673	inositol 2-dehydrogenase activity
JJL53_RS19065	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JJL53_RS19070	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJL53_RS19075	COG3036	rescue of stalled ribosome
JJL53_RS19095	COG0138	bifunctional purine biosynthesis protein purh
JJL53_RS19100	COG0151	Belongs to the GarS family
JJL53_RS19125	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JJL53_RS19130	COG0358	DNA primase activity
JJL53_RS19135	COG1610	YqeY-like protein
JJL53_RS19140	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JJL53_RS19145	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JJL53_RS19160	COG3039	Transposase
JJL53_RS19165	COG4942	peptidase
JJL53_RS19165	COG1388	LysM domain
JJL53_RS19170	COG1238	metal cluster binding
JJL53_RS19175	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JJL53_RS19180	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
JJL53_RS19185	COG0585	pseudouridine synthase activity
JJL53_RS19195	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JJL53_RS19200	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JJL53_RS19205	COG0148	phosphopyruvate hydratase activity
JJL53_RS19210	COG0504	CTP synthase activity
JJL53_RS19215	COG3956	TIGRFAM MazG family protein
JJL53_RS19220	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JJL53_RS19225	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JJL53_RS19235	COG4807	Protein conserved in bacteria
JJL53_RS19240	COG3023	N-Acetylmuramoyl-L-alanine amidase
JJL53_RS19245	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JJL53_RS19250	COG1381	Involved in DNA repair and RecF pathway recombination
JJL53_RS19260	COG0571	ribonuclease III activity
JJL53_RS19265	COG0681	Belongs to the peptidase S26 family
JJL53_RS19270	COG0481	GTPase activity
JJL53_RS19290	COG1595	DNA-templated transcription, initiation
JJL53_RS19295	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JJL53_RS19345	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_RS19350	COG0191	fructose-bisphosphate aldolase activity
JJL53_RS19355	COG0126	phosphoglycerate kinase activity
JJL53_RS19360	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JJL53_RS19365	COG1940	carbohydrate kinase activity
JJL53_RS19370	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JJL53_RS19380	COG4991	sh3 domain protein
JJL53_RS19385	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJL53_RS19400	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JJL53_RS19405	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_RS19415	COG1505	serine-type exopeptidase activity
JJL53_RS19420	COG3174	membrane
JJL53_RS19425	COG0110	maltose O-acetyltransferase activity
JJL53_RS19465	COG0165	Argininosuccinate lyase
JJL53_RS19470	COG0137	argininosuccinate synthase activity
JJL53_RS19480	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JJL53_RS19485	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JJL53_RS19495	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JJL53_RS19545	COG0583	DNA-binding transcription factor activity
JJL53_RS19550	COG1380	Effector of murein hydrolase LrgA
JJL53_RS19555	COG1346	cytolysis
JJL53_RS19560	COG0460	homoserine dehydrogenase
JJL53_RS19560	COG0527	aspartate kinase activity
JJL53_RS19565	COG0626	cystathionine gamma-synthase activity
JJL53_RS19580	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_RS19585	COG0814	amino acid
JJL53_RS19590	COG1218	3'(2'),5'-bisphosphate nucleotidase
JJL53_RS19595	COG0494	nUDIX hydrolase
JJL53_RS19600	COG1011	Hydrolase
JJL53_RS19635	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JJL53_RS19645	COG3156	type II secretion system protein K
JJL53_RS19655	COG4795	General secretion pathway protein
JJL53_RS19660	COG2165	general secretion pathway protein
JJL53_RS19670	COG2165	general secretion pathway protein
JJL53_RS19675	COG1459	type II secretion system
JJL53_RS19680	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JJL53_RS19690	COG3031	protein transport across the cell outer membrane
JJL53_RS19700	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JJL53_RS19705	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
JJL53_RS19725	COG3133	Outer membrane lipoprotein
JJL53_RS19735	COG1392	Phosphate transport regulator
JJL53_RS19740	COG0306	phosphate transporter
JJL53_RS19745	COG0617	tRNA 3'-terminal CCA addition
JJL53_RS19750	COG3267	Type II secretory pathway component ExeA
JJL53_RS19750	COG3409	Peptidoglycan-binding domain 1 protein
JJL53_RS19760	COG1194	a g-specific adenine glycosylase
JJL53_RS19765	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
JJL53_RS19780	COG3240	lipase activity
JJL53_RS19790	COG3009	Protein conserved in bacteria
JJL53_RS19795	COG3008	intermembrane lipid transfer
JJL53_RS19795	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JJL53_RS19800	COG2995	paraquat-inducible protein a
JJL53_RS19810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_RS19815	COG2203	Gaf domain
JJL53_RS19815	COG3706	GGDEF domain
JJL53_RS19815	COG4251	negative regulation of phosphorylation
JJL53_RS19815	COG5001	Diguanylate cyclase
JJL53_RS19820	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJL53_RS19825	COG2813	Specifically methylates the guanine in position
JJL53_RS19830	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JJL53_RS19835	COG0297	glycogen (starch) synthase activity
JJL53_RS19875	COG1757	Na H antiporter
JJL53_RS19880	COG0583	DNA-binding transcription factor activity
JJL53_RS19885	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JJL53_RS19890	COG3842	ATPase activity
JJL53_RS19900	COG5433	transposase activity
JJL53_RS19910	COG1177	transmembrane transport
JJL53_RS19915	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_RS19920	COG0109	protoheme IX farnesyltransferase activity
JJL53_RS19925	COG1612	heme a metabolic process
JJL53_RS19950	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
JJL53_RS19955	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JJL53_RS19960	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JJL53_RS19965	COG1444	tRNA N-acetyltransferase activity
JJL53_RS19985	COG1803	Methylglyoxal synthase
JJL53_RS20000	COG5433	transposase activity
JJL53_RS20005	COG0252	asparaginase activity
JJL53_RS20015	COG1609	Transcriptional regulator
JJL53_RS20025	COG1940	carbohydrate kinase activity
JJL53_RS20030	COG1447	Phosphotransferase system cellobiose-specific component IIA
JJL53_RS20035	COG2723	6-phospho-beta-galactosidase activity
JJL53_RS20040	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_RS20040	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_RS20045	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_RS20050	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_RS20060	COG1609	Transcriptional regulator
JJL53_RS20065	COG1263	PTS System
JJL53_RS20065	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_RS20070	COG0366	Alpha amylase catalytic
JJL53_RS20075	COG0110	maltose O-acetyltransferase activity
JJL53_RS20080	COG1522	sequence-specific DNA binding
JJL53_RS20085	COG5006	permease, DMT superfamily
JJL53_RS20110	COG3385	transposase activity
JJL53_RS20145	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JJL53_RS20150	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JJL53_RS20165	COG0477	Major facilitator Superfamily
JJL53_RS20170	COG0523	cobalamin synthesis protein
JJL53_RS20180	COG1280	lysine exporter protein (LysE YggA)
JJL53_RS20190	COG2200	EAL domain
JJL53_RS20195	COG1049	propionate catabolic process, 2-methylcitrate cycle
JJL53_RS20200	COG1752	Esterase of the alpha-beta hydrolase superfamily
JJL53_RS20205	COG0840	transmembrane signaling receptor activity
JJL53_RS20220	COG3706	GGDEF domain
JJL53_RS20225	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJL53_RS20230	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJL53_RS20235	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JJL53_RS20240	COG2186	Transcriptional regulator
JJL53_RS20260	COG5433	transposase activity
JJL53_RS20270	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JJL53_RS20275	COG1459	type II secretion system
JJL53_RS20280	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JJL53_RS20290	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
JJL53_RS20295	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
JJL53_RS20305	COG0653	protein targeting
JJL53_RS20315	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
JJL53_RS20320	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JJL53_RS20325	COG0849	cell division
JJL53_RS20330	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JJL53_RS20335	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JJL53_RS20340	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JJL53_RS20345	COG0772	Belongs to the SEDS family
JJL53_RS20350	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JJL53_RS20355	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JJL53_RS20360	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JJL53_RS20365	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JJL53_RS20370	COG0768	penicillin binding
JJL53_RS20375	COG3116	cell division
JJL53_RS20380	COG0275	rRNA processing
JJL53_RS20385	COG2001	Belongs to the MraZ family
JJL53_RS20410	COG5433	transposase activity
JJL53_RS20440	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JJL53_RS20445	COG3107	peptidoglycan biosynthetic process
JJL53_RS20450	COG0792	nuclease activity
JJL53_RS20455	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JJL53_RS20460	COG2823	Periplasmic or secreted lipoprotein
JJL53_RS20465	COG2969	positive regulation of protein catabolic process
JJL53_RS20470	COG0625	glutathione transferase activity
JJL53_RS20475	COG2857	Cytochrome c1
JJL53_RS20480	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JJL53_RS20485	COG0723	plastoquinol--plastocyanin reductase activity
JJL53_RS20490	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JJL53_RS20495	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JJL53_RS20500	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JJL53_RS20510	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJL53_RS20515	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJL53_RS20525	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_RS20530	COG1660	Displays ATPase and GTPase activities
JJL53_RS20535	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_RS20550	COG1137	ATPase activity
JJL53_RS20555	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JJL53_RS20560	COG3117	lipopolysaccharide transmembrane transporter activity
JJL53_RS20565	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JJL53_RS20570	COG0517	IMP dehydrogenase activity
JJL53_RS20570	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JJL53_RS20575	COG1127	ABC transporter
JJL53_RS20580	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JJL53_RS20585	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JJL53_RS20590	COG2854	intermembrane phospholipid transfer
JJL53_RS20600	COG5007	Belongs to the BolA IbaG family
JJL53_RS20605	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JJL53_RS20610	COG0312	modulator of DNA gyrase
JJL53_RS20615	COG3028	Belongs to the UPF0307 family
JJL53_RS20625	COG3385	transposase activity
JJL53_RS20630	COG2926	Belongs to the UPF0265 family
JJL53_RS20665	COG1396	sequence-specific DNA binding
JJL53_RS20670	COG3135	benzoate transporter
JJL53_RS20680	COG1522	sequence-specific DNA binding
JJL53_RS20690	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
JJL53_RS20700	COG1058	Belongs to the CinA family
JJL53_RS20700	COG1546	Belongs to the CinA family
JJL53_RS20705	COG1988	membrane-bound metal-dependent
JJL53_RS20715	COG0561	phosphatase activity
JJL53_RS20720	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JJL53_RS20735	COG1011	Hydrolase
JJL53_RS20750	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JJL53_RS20755	COG0019	diaminopimelate decarboxylase activity
JJL53_RS20765	COG1965	Belongs to the frataxin family
JJL53_RS20770	COG0400	carboxylic ester hydrolase activity
JJL53_RS20775	COG3072	Adenylate cyclase
JJL53_RS20780	COG0181	hydroxymethylbilane synthase activity
JJL53_RS20790	COG2959	enzyme of heme biosynthesis
JJL53_RS20795	COG3071	HemY protein
JJL53_RS20810	COG1494	fructose-1,6-bisphosphatase
JJL53_RS20820	COG1247	-acetyltransferase
JJL53_RS20840	COG1733	regulation of RNA biosynthetic process
JJL53_RS20855	COG3932	Exopolysaccharide synthesis, ExoD
JJL53_RS20885	COG3039	Transposase
JJL53_RS20890	COG3039	Transposase
JJL53_RS20895	COG3385	transposase activity
JJL53_RS20900	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JJL53_RS20905	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JJL53_RS20910	COG2022	thiamine diphosphate biosynthetic process
JJL53_RS20920	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JJL53_RS20925	COG0352	thiamine-phosphate diphosphorylase activity
JJL53_RS20930	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JJL53_RS20935	COG3385	transposase activity
JJL53_RS20945	COG5433	transposase activity
JJL53_RS20955	COG5433	transposase activity
JJL53_RS20980	COG0745	RESPONSE REGULATOR receiver
JJL53_RS20990	COG0189	ligase activity
JJL53_RS21050	COG3039	Transposase
JJL53_RS21055	COG1484	DNA-dependent DNA replication
JJL53_RS21060	COG5433	transposase activity
JJL53_RS21065	COG3385	transposase activity
JJL53_RS21070	COG3385	transposase activity
JJL53_RS21095	COG3385	transposase activity
JJL53_RS21110	COG0477	Major facilitator Superfamily
JJL53_RS21125	COG0312	modulator of DNA gyrase
JJL53_RS21130	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJL53_RS21135	COG3164	Protein of unknown function
JJL53_RS21140	COG1530	ribonuclease E activity
JJL53_RS21145	COG0424	maF-like protein
JJL53_RS21150	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JJL53_RS21155	COG1792	Involved in formation and maintenance of cell shape
JJL53_RS21160	COG1077	Cell shape determining protein MreB Mrl
JJL53_RS21170	COG5433	transposase activity
JJL53_RS21205	COG2199	diguanylate cyclase activity
JJL53_RS21205	COG2200	EAL domain
JJL53_RS21210	COG3039	Transposase
JJL53_RS21215	COG2200	EAL domain
JJL53_RS21220	COG0387	Pfam Sodium calcium exchanger
JJL53_RS21225	COG2986	histidine ammonia-lyase
JJL53_RS21230	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JJL53_RS21235	COG0010	Belongs to the arginase family
JJL53_RS21240	COG1228	amidohydrolase
JJL53_RS21250	COG2188	Transcriptional regulator
JJL53_RS21255	COG0288	reversible hydration of carbon dioxide
JJL53_RS21265	COG2177	Part of the ABC transporter FtsEX involved in
JJL53_RS21270	COG2884	Cell division ATP-binding protein ftsE
JJL53_RS21275	COG0552	protein localization to endoplasmic reticulum
JJL53_RS21280	COG0742	ribosomal rna small subunit methyltransferase
JJL53_RS21305	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JJL53_RS21335	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_RS21345	COG2095	MarC family integral membrane protein
JJL53_RS21355	COG1301	dicarboxylic acid transport
JJL53_RS21380	COG3714	YhhN family
JJL53_RS21410	COG1770	oligopeptidase
JJL53_RS21425	COG2249	NAD(P)H dehydrogenase (quinone) activity
JJL53_RS21455	COG4584	PFAM Integrase catalytic
JJL53_RS21495	COG4584	PFAM Integrase catalytic
JJL53_RS21500	COG1484	DNA-dependent DNA replication
JJL53_RS21505	COG0203	ribosomal protein L17
JJL53_RS21510	COG0202	RNA polymerase activity
JJL53_RS21515	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JJL53_RS21520	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JJL53_RS21525	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JJL53_RS21530	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JJL53_RS21535	COG0201	protein transport
JJL53_RS21540	COG0200	Binds to the 23S rRNA
JJL53_RS21545	COG1841	ribosomal large subunit assembly
JJL53_RS21550	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JJL53_RS21555	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JJL53_RS21560	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JJL53_RS21565	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JJL53_RS21570	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JJL53_RS21575	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JJL53_RS21580	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JJL53_RS21585	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JJL53_RS21590	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JJL53_RS21595	COG0255	Belongs to the universal ribosomal protein uL29 family
JJL53_RS21600	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JJL53_RS21605	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JJL53_RS21610	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JJL53_RS21615	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JJL53_RS21620	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JJL53_RS21625	COG0089	rRNA binding
JJL53_RS21630	COG0088	Forms part of the polypeptide exit tunnel
JJL53_RS21635	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JJL53_RS21640	COG0051	transcription antitermination factor activity, RNA binding
JJL53_RS21650	COG2205	protein histidine kinase activity
JJL53_RS21660	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JJL53_RS21665	COG2183	response to ionizing radiation
JJL53_RS21680	COG0596	Alpha beta hydrolase
JJL53_RS21685	COG1040	competence protein
JJL53_RS21690	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JJL53_RS21690	COG0316	Belongs to the HesB IscA family
JJL53_RS21695	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JJL53_RS21700	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JJL53_RS21705	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JJL53_RS21710	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JJL53_RS21715	COG4942	peptidase
JJL53_RS21725	COG1609	Transcriptional regulator
JJL53_RS21730	COG0800	Aldolase
JJL53_RS21735	COG0129	dihydroxy-acid dehydratase activity
JJL53_RS21740	COG3265	gluconokinase activity
JJL53_RS21745	COG2610	gluconate transmembrane transporter activity
JJL53_RS21750	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JJL53_RS21755	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JJL53_RS21765	COG0456	acetyltransferase
JJL53_RS21775	COG1490	D-aminoacyl-tRNA deacylase activity
JJL53_RS21780	COG1295	ribonuclease BN
JJL53_RS21785	COG1295	ribonuclease BN
JJL53_RS21790	COG1217	gtp-binding protein TYPA
JJL53_RS21795	COG0174	glutamine synthetase
JJL53_RS21805	COG3852	Histidine kinase
JJL53_RS21815	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JJL53_RS21820	COG5433	transposase activity
JJL53_RS21825	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJL53_RS21835	COG3078	GTPase activator activity
JJL53_RS21845	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JJL53_RS21850	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JJL53_RS21855	COG0408	coproporphyrinogen oxidase activity
JJL53_RS21860	COG0009	L-threonylcarbamoyladenylate synthase
JJL53_RS21865	COG0551	DNA topoisomerase type I activity
JJL53_RS21870	COG2922	Belongs to the Smg family
JJL53_RS21875	COG0758	DNA mediated transformation
JJL53_RS21885	COG0242	peptide deformylase activity
JJL53_RS21890	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JJL53_RS21895	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJL53_RS21895	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JJL53_RS21900	COG0569	domain protein
JJL53_RS21905	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JJL53_RS21910	COG1322	Protein conserved in bacteria
JJL53_RS21930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_RS21940	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JJL53_RS21940	COG0519	Catalyzes the synthesis of GMP from XMP
JJL53_RS21950	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJL53_RS21955	COG1396	sequence-specific DNA binding
JJL53_RS21960	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_RS21980	COG2962	Rard protein
JJL53_RS21990	COG1280	lysine exporter protein (LysE YggA)
JJL53_RS21995	COG2391	methyltransferase activity
JJL53_RS22020	COG0210	DNA helicase
JJL53_RS22025	COG1744	ABC transporter substrate-binding protein PnrA-like
JJL53_RS22030	COG3845	ABC transporter
JJL53_RS22035	COG4603	Belongs to the binding-protein-dependent transport system permease family
JJL53_RS22040	COG1079	Belongs to the binding-protein-dependent transport system permease family
JJL53_RS22055	COG0583	DNA-binding transcription factor activity
JJL53_RS22075	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JJL53_RS22080	COG0385	Bile acid
JJL53_RS22085	COG0531	amino acid
JJL53_RS22090	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_RS22095	COG0531	amino acid
JJL53_RS22100	COG2731	YhcH YjgK YiaL family protein
JJL53_RS22105	COG3250	beta-galactosidase activity
JJL53_RS22120	COG1609	Transcriptional regulator
JJL53_RS22160	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JJL53_RS22165	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJL53_RS22165	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJL53_RS22170	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JJL53_RS22175	COG3074	FtsZ-dependent cytokinesis
JJL53_RS22185	COG1045	serine acetyltransferase
JJL53_RS22195	COG0745	RESPONSE REGULATOR receiver
JJL53_RS22200	COG2205	protein histidine kinase activity
JJL53_RS22205	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JJL53_RS22210	COG0534	Mate efflux family protein
JJL53_RS22225	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JJL53_RS22230	COG2937	Belongs to the GPAT DAPAT family
JJL53_RS22235	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JJL53_RS22240	COG3161	chorismate lyase activity
JJL53_RS22245	COG1580	Controls the rotational direction of flagella during chemotaxis
JJL53_RS22260	COG0604	alcohol dehydrogenase
JJL53_RS22275	COG5433	transposase activity
JJL53_RS22280	COG3385	transposase activity
JJL53_RS22295	COG3307	-O-antigen
JJL53_RS22300	COG0438	transferase activity, transferring glycosyl groups
JJL53_RS22305	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJL53_RS22320	COG1063	alcohol dehydrogenase
JJL53_RS22335	COG0210	DNA helicase
JJL53_RS22340	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JJL53_RS22345	COG2166	iron-sulfur cluster assembly
JJL53_RS22350	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JJL53_RS22380	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
JJL53_RS22385	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JJL53_RS22390	COG1739	Uncharacterized protein family UPF0029
JJL53_RS22395	COG0006	proline dipeptidase activity
JJL53_RS22400	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJL53_RS22405	COG1024	Enoyl-CoA hydratase
JJL53_RS22405	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJL53_RS22410	COG0183	Belongs to the thiolase family
JJL53_RS22425	COG1653	transport
JJL53_RS22435	COG0425	Belongs to the sulfur carrier protein TusA family
JJL53_RS22440	COG0251	oxidation-reduction process
JJL53_RS22445	COG2885	chlorophyll binding
JJL53_RS22475	COG0752	glycyl-tRNA synthetase alpha subunit
JJL53_RS22480	COG0751	glycine-tRNA ligase activity
JJL53_RS22490	COG0814	amino acid
JJL53_RS22495	COG0814	amino acid
JJL53_RS22500	COG5433	transposase activity
JJL53_RS22510	COG3033	Beta-eliminating lyase
JJL53_RS22520	COG0348	domain, Protein
JJL53_RS22530	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_RS22535	COG0426	domain, Protein
JJL53_RS22535	COG1773	rubredoxin
JJL53_RS22540	COG3604	Transcriptional regulator
JJL53_RS22545	COG1609	Transcriptional regulator
JJL53_RS22585	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JJL53_RS22600	COG2960	long-chain fatty acid transporting porin activity
JJL53_RS22615	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JJL53_RS22630	COG3118	belongs to the thioredoxin family
JJL53_RS22635	COG0513	Belongs to the DEAD box helicase family
JJL53_RS22640	COG0248	Ppx GppA phosphatase
JJL53_RS22655	COG0742	ribosomal rna small subunit methyltransferase
JJL53_RS22675	COG0084	hydrolase, TatD family'
JJL53_RS22680	COG0805	protein transport
JJL53_RS22685	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_RS22690	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_RS22695	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JJL53_RS22700	COG3165	ubiquinone biosynthetic process from chorismate
JJL53_RS22705	COG2226	methyltransferase
JJL53_RS22710	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JJL53_RS22715	COG0402	S-adenosylhomocysteine deaminase activity
JJL53_RS22720	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JJL53_RS22755	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JJL53_RS22760	COG0848	biopolymer transport protein
JJL53_RS22765	COG0811	peptide transport
JJL53_RS22770	COG0811	peptide transport
JJL53_RS22780	COG2771	luxR family
JJL53_RS22785	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JJL53_RS22790	COG1349	DNA-binding transcription factor activity
JJL53_RS22795	COG0745	RESPONSE REGULATOR receiver
JJL53_RS22800	COG2205	protein histidine kinase activity
JJL53_RS22810	COG4452	Inner membrane protein CreD
JJL53_RS22815	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JJL53_RS22820	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JJL53_RS22825	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JJL53_RS22830	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JJL53_RS22835	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JJL53_RS22840	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JJL53_RS22845	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JJL53_RS22855	COG0356	it plays a direct role in the translocation of protons across the membrane
JJL53_RS22865	COG1475	DNA binding
JJL53_RS22870	COG1192	Involved in chromosome partitioning
JJL53_RS22875	COG0357	Ribosomal RNA small subunit methyltransferase G
JJL53_RS22880	COG0445	tRNA wobble uridine modification
JJL53_RS22885	COG0716	FMN binding
JJL53_RS22890	COG4774	siderophore transport
JJL53_RS22895	COG4615	Cyclic peptide transporter
JJL53_RS22900	COG1120	ATPase activity
JJL53_RS22905	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JJL53_RS22910	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_RS22915	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JJL53_RS22920	COG0706	membrane insertase activity
JJL53_RS22925	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JJL53_RS22930	COG0594	ribonuclease P activity
JJL53_RS22935	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JJL53_RS22940	COG1126	abc transporter atp-binding protein
JJL53_RS23010	COG5433	transposase activity
JJL53_RS23060	COG0675	Transposase, IS605 OrfB family
JJL53_RS23070	COG0210	DNA helicase
JJL53_RS23140	COG0675	Transposase, IS605 OrfB family
JJL53_RS23160	COG5433	transposase activity
JJL53_RS23165	COG5433	transposase activity
JJL53_RS23200	COG3385	transposase activity
JJL53_RS23210	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_RS23225	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JJL53_RS23260	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_RS23265	COG4584	PFAM Integrase catalytic
JJL53_RS23270	COG1484	DNA-dependent DNA replication
JJL53_RS23300	COG0675	Transposase, IS605 OrfB family
JJL53_RS23320	COG5433	transposase activity
JJL53_RS23360	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JJL53_RS23375	COG2189	Belongs to the N(4) N(6)-methyltransferase family
JJL53_RS23380	COG5433	transposase activity
JJL53_RS23395	COG0783	Belongs to the Dps family
JJL53_RS23405	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JJL53_RS23410	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJL53_RS23420	COG4372	Transposase
JJL53_RS23425	COG3436	PFAM IS66 Orf2 family protein
JJL53_RS23455	COG5433	transposase activity
JJL53_RS23465	COG1342	Belongs to the UPF0251 family
JJL53_RS23520	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
JJL53_RS23545	COG0675	Transposase, IS605 OrfB family
JJL53_RS23580	COG5433	transposase activity
JJL53_RS23595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_RS23600	COG1131	(ABC) transporter
JJL53_RS23605	COG0842	Transport permease protein
JJL53_RS23610	COG0842	Transport permease protein
JJL53_RS23615	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_RS23630	COG2116	formate transmembrane transporter activity
JJL53_RS23645	COG0675	Transposase, IS605 OrfB family
JJL53_RS23675	COG0675	Transposase, IS605 OrfB family
JJL53_RS23780	COG0629	single-stranded DNA binding
JJL53_RS23785	COG0675	Transposase, IS605 OrfB family
JJL53_RS23805	COG0675	Transposase, IS605 OrfB family
JJL53_RS23880	COG0675	Transposase, IS605 OrfB family
JJL53_RS23980	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JJL53_RS24010	COG5433	transposase activity
JJL53_RS24020	COG3300	MHYT domain
JJL53_RS24020	COG5001	Diguanylate cyclase
JJL53_RS24040	COG5433	transposase activity
JJL53_RS24050	COG0675	Transposase, IS605 OrfB family
JJL53_RS24110	COG0675	Transposase, IS605 OrfB family
JJL53_RS24135	COG0675	Transposase, IS605 OrfB family
JJL53_RS24140	COG0681	Belongs to the peptidase S26 family
JJL53_RS24205	COG5377	YqaJ viral recombinase family
JJL53_RS24235	COG2003	Belongs to the UPF0758 family
JJL53_RS24285	COG0494	nUDIX hydrolase
JJL53_RS24360	COG0675	Transposase, IS605 OrfB family
JJL53_RS24370	COG0675	Transposase, IS605 OrfB family
JJL53_RS24420	COG4804	nuclease activity
JJL53_RS24455	COG0675	Transposase, IS605 OrfB family
JJL53_RS24475	COG2916	Histone family protein nucleoid-structuring protein H-NS
JJL53_RS24480	COG5433	transposase activity
JJL53_RS24485	COG3039	Transposase
JJL53_RS24490	COG0243	molybdopterin cofactor binding
JJL53_RS24495	COG0437	4 iron, 4 sulfur cluster binding
JJL53_RS24500	COG3302	dmso reductase anchor subunit
JJL53_RS24510	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JJL53_RS24515	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JJL53_RS24525	COG0314	molybdopterin synthase activity
JJL53_RS24530	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JJL53_RS24535	COG0315	cyclic pyranopterin monophosphate synthase activity
JJL53_RS24540	COG0521	Mo-molybdopterin cofactor biosynthetic process
JJL53_RS24545	COG3039	Transposase
JJL53_RS24550	COG3005	denitrification pathway
JJL53_RS24555	COG0243	molybdopterin cofactor binding
JJL53_RS24565	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_RS24570	COG0805	protein transport
JJL53_RS24580	COG5433	transposase activity
JJL53_RS24590	COG0653	protein targeting
JJL53_RS24625	COG1660	Displays ATPase and GTPase activities
JJL53_RS24645	COG3173	Aminoglycoside phosphotransferase
JJL53_RS24675	COG1192	Involved in chromosome partitioning
JJL53_RS24740	COG3727	T/G mismatch-specific endonuclease activity
JJL53_RS24755	COG3077	Addiction module antitoxin, RelB DinJ family
JJL53_RS24760	COG2026	Addiction module toxin, RelE StbE family
JJL53_RS24770	COG5433	transposase activity