B224_RS00025 SM00344 helix_turn_helix ASNC type B224_RS00040 SM00530 Helix-turn-helix XRE-family like proteins B224_RS00125 SM00382 ATPases associated with a variety of cellular activities B224_RS00130 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS00150 SM00382 ATPases associated with a variety of cellular activities B224_RS00195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_RS00200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_RS00250 SM00749 bacterial OsmY and nodulation domain B224_RS00285 SM00671 Sel1-like repeats. B224_RS00305 SM00857 Resolvase, N terminal domain B224_RS00390 SM00842 Cell division protein FtsA B224_RS00395 SM00864 Tubulin/FtsZ family, GTPase domain B224_RS00395 SM00865 Tubulin/FtsZ family, C-terminal domain B224_RS00410 SM00957 SecA DEAD-like domain B224_RS00410 SM00958 SecA preprotein cross-linking domain B224_RS00470 SM00644 B224_RS00470 B224_RS00480 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS00480 SM00895 B224_RS00480 B224_RS00500 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_RS00500 SM00267 diguanylate cyclase B224_RS00515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS00515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS00530 SM00052 Putative diguanylate phosphodiesterase B224_RS00550 SM00833 Cobalamin synthesis protein cobW C-terminal domain B224_RS00570 SM00905 Dihydroneopterin aldolase B224_RS00575 SM01207 B224_RS00575 B224_RS00640 SM00344 helix_turn_helix ASNC type B224_RS00650 SM01266 B224_RS00650 B224_RS00655 SM00642 Alpha-amylase domain B224_RS00665 SM00354 helix_turn _helix lactose operon repressor B224_RS00710 SM00354 helix_turn _helix lactose operon repressor B224_RS00720 SM00870 B224_RS00720 B224_RS00740 SM00851 MGS-like domain B224_RS00825 SM00382 ATPases associated with a variety of cellular activities B224_RS00895 SM01130 B224_RS00895 B224_RS00900 SM00267 diguanylate cyclase B224_RS00955 SM00478 endonuclease III B224_RS00965 SM00382 ATPases associated with a variety of cellular activities B224_RS00985 SM01118 B224_RS00985 B224_RS01005 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS01005 SM00895 B224_RS01005 B224_RS01020 SM00363 S4 RNA-binding domain B224_RS01035 SM00382 ATPases associated with a variety of cellular activities B224_RS01085 SM00421 helix_turn_helix, Lux Regulon B224_RS01135 SM00342 helix_turn_helix, arabinose operon control protein B224_RS01175 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS01185 SM00450 Rhodanese Homology Domain B224_RS01200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_RS01200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS01200 SM00267 diguanylate cyclase B224_RS01215 SM00859 Semialdehyde dehydrogenase, NAD binding domain B224_RS01275 SM01266 B224_RS01275 B224_RS01295 SM00822 B224_RS01295 B224_RS01310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS01310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS01320 SM00287 Bacterial SH3 domain homologues B224_RS01340 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_RS01440 SM00358 Double-stranded RNA binding motif B224_RS01440 SM00535 Ribonuclease III family B224_RS01460 SM00644 B224_RS01460 B224_RS01470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS01470 SM00387 Histidine kinase-like ATPases B224_RS01470 SM00388 His Kinase A (phosphoacceptor) domain B224_RS01470 SM00448 cheY-homologous receiver domain B224_RS01480 SM00954 Region found in RelA / SpoT proteins B224_RS01495 SM01192 B224_RS01495 B224_RS01495 SM01193 B224_RS01495 B224_RS01535 SM00257 Lysin motif B224_RS01570 SM00400 zinc finger B224_RS01570 SM00493 B224_RS01570 B224_RS01570 SM00766 DNA primase DnaG DnaB-binding B224_RS01585 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins B224_RS01585 SM00632 B224_RS01585 B224_RS01585 SM00642 Alpha-amylase domain B224_RS01600 SM01209 B224_RS01600 B224_RS01600 SM01210 B224_RS01600 B224_RS01605 SM00798 AICARFT/IMPCHase bienzyme B224_RS01605 SM00851 MGS-like domain B224_RS01615 SM00422 helix_turn_helix, mercury resistance B224_RS01630 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS01660 SM00244 prohibitin homologues B224_RS01705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS01725 SM00382 ATPases associated with a variety of cellular activities B224_RS01780 SM00382 ATPases associated with a variety of cellular activities B224_RS01840 SM00487 DEAD-like helicases superfamily B224_RS01840 SM00490 helicase superfamily c-terminal domain B224_RS01840 SM00847 Helicase associated domain (HA2) Add an annotation B224_RS01875 SM00014 Acid phosphatase homologues B224_RS01975 SM00382 ATPases associated with a variety of cellular activities B224_RS01985 SM00448 cheY-homologous receiver domain B224_RS02000 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_RS02140 SM00327 von Willebrand factor (vWF) type A domain B224_RS02170 SM00382 ATPases associated with a variety of cellular activities B224_RS02175 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS02210 SM00382 ATPases associated with a variety of cellular activities B224_RS02225 SM00052 Putative diguanylate phosphodiesterase B224_RS02255 SM00450 Rhodanese Homology Domain B224_RS02265 SM00382 ATPases associated with a variety of cellular activities B224_RS02295 SM00354 helix_turn _helix lactose operon repressor B224_RS02345 SM00052 Putative diguanylate phosphodiesterase B224_RS02355 SM00091 PAS domain B224_RS02365 SM00342 helix_turn_helix, arabinose operon control protein B224_RS02400 SM00479 B224_RS02400 B224_RS02435 SM00357 Cold shock protein domain B224_RS02445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS02445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS02480 SM00495 Chitin-binding domain type 3 B224_RS02480 SM00636 B224_RS02480 B224_RS02485 SM00028 Tetratricopeptide repeats B224_RS02540 SM00382 ATPases associated with a variety of cellular activities B224_RS02545 SM00382 ATPases associated with a variety of cellular activities B224_RS02570 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B224_RS02600 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_RS02610 SM01012 B224_RS02610 B224_RS02625 SM00382 ATPases associated with a variety of cellular activities B224_RS02650 SM01057 Eukaryotic-type carbonic anhydrase B224_RS02660 SM00822 B224_RS02660 B224_RS02665 SM00825 Beta-ketoacyl synthase B224_RS02675 SM00852 Probable molybdopterin binding domain B224_RS02710 SM00382 ATPases associated with a variety of cellular activities B224_RS02750 SM00937 B224_RS02750 B224_RS02755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS02755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS02760 SM00052 Putative diguanylate phosphodiesterase B224_RS02760 SM00267 diguanylate cyclase B224_RS02760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS02775 SM00870 B224_RS02775 B224_RS02785 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_RS02815 SM01266 B224_RS02815 B224_RS02850 SM00878 Biotin carboxylase C-terminal domain B224_RS02895 SM00448 cheY-homologous receiver domain B224_RS02895 SM00862 Transcriptional regulatory protein, C terminal B224_RS02910 SM00387 Histidine kinase-like ATPases B224_RS02910 SM00388 His Kinase A (phosphoacceptor) domain B224_RS02910 SM00448 cheY-homologous receiver domain B224_RS02975 SM00382 ATPases associated with a variety of cellular activities B224_RS02995 SM00861 Transketolase, pyrimidine binding domain B224_RS03030 SM01103 B224_RS03030 B224_RS03040 SM00382 ATPases associated with a variety of cellular activities B224_RS03080 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS03100 SM01387 B224_RS03100 B224_RS03105 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS03105 SM00322 K homology RNA-binding domain B224_RS03235 SM00842 Cell division protein FtsA B224_RS03255 SM00849 Metallo-beta-lactamase superfamily B224_RS03315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS03315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS03360 SM01236 B224_RS03360 B224_RS03365 SM00822 B224_RS03365 B224_RS03375 SM00448 cheY-homologous receiver domain B224_RS03375 SM00862 Transcriptional regulatory protein, C terminal B224_RS03380 SM00387 Histidine kinase-like ATPases B224_RS03380 SM00388 His Kinase A (phosphoacceptor) domain B224_RS03395 SM01240 B224_RS03395 B224_RS03405 SM00841 Elongation factor P, C-terminal B224_RS03405 SM01185 B224_RS03405 B224_RS03430 SM00267 diguanylate cyclase B224_RS03440 SM00267 diguanylate cyclase B224_RS03460 SM00357 Cold shock protein domain B224_RS03470 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS03485 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS03485 SM01091 Transporter associated domain B224_RS03550 SM00936 Penicillin-binding protein 5, C-terminal domain B224_RS03565 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS03590 SM00382 ATPases associated with a variety of cellular activities B224_RS03635 SM01150 B224_RS03635 B224_RS03660 SM01022 B224_RS03660 B224_RS03725 SM01400 B224_RS03725 B224_RS03745 SM00937 B224_RS03745 B224_RS03780 SM00986 Uracil DNA glycosylase superfamily B224_RS03780 SM00987 UreE urease accessory protein, C-terminal domain B224_RS03830 SM00732 Likely ribonuclease with RNase H fold. B224_RS03855 SM00731 SprT homologues. B224_RS03865 SM00861 Transketolase, pyrimidine binding domain B224_RS03900 SM00363 S4 RNA-binding domain B224_RS03915 SM00342 helix_turn_helix, arabinose operon control protein B224_RS03920 SM00788 Adenylosuccinate synthetase B224_RS03965 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B224_RS03965 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B224_RS03965 SM00493 B224_RS03965 B224_RS03975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS03995 SM00382 ATPases associated with a variety of cellular activities B224_RS04000 SM00382 ATPases associated with a variety of cellular activities B224_RS04035 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS04110 SM00857 Resolvase, N terminal domain B224_RS04125 SM00382 ATPases associated with a variety of cellular activities B224_RS04200 SM00073 Histidine Phosphotransfer domain B224_RS04200 SM00260 Two component signalling adaptor domain B224_RS04200 SM00387 Histidine kinase-like ATPases B224_RS04200 SM01231 B224_RS04200 B224_RS04205 SM00448 cheY-homologous receiver domain B224_RS04225 SM00260 Two component signalling adaptor domain B224_RS04230 SM00260 Two component signalling adaptor domain B224_RS04240 SM00382 ATPases associated with a variety of cellular activities B224_RS04360 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS04360 SM00091 PAS domain B224_RS04360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS04370 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS04385 SM00919 Malic enzyme, NAD binding domain B224_RS04385 SM01274 B224_RS04385 B224_RS04410 SM00421 helix_turn_helix, Lux Regulon B224_RS04440 SM00382 ATPases associated with a variety of cellular activities B224_RS04460 SM00495 Chitin-binding domain type 3 B224_RS04480 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. B224_RS04550 SM00635 Bacterial Ig-like domain 2 B224_RS04570 SM00342 helix_turn_helix, arabinose operon control protein B224_RS04575 SM01329 B224_RS04575 B224_RS04600 SM00528 Domain in histone-like proteins of HNS family B224_RS04620 SM00382 ATPases associated with a variety of cellular activities B224_RS04635 SM01131 B224_RS04635 B224_RS04645 SM00267 diguanylate cyclase B224_RS04665 SM00271 DnaJ molecular chaperone homology domain B224_RS04685 SM00640 Glycosyl hydrolases family 32 B224_RS04690 SM00354 helix_turn _helix lactose operon repressor B224_RS04710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B224_RS04735 SM00091 PAS domain B224_RS04735 SM00267 diguanylate cyclase B224_RS04750 SM01321 B224_RS04750 B224_RS04800 SM01321 B224_RS04800 B224_RS04810 SM00028 Tetratricopeptide repeats B224_RS04810 SM00448 cheY-homologous receiver domain B224_RS04940 SM00530 Helix-turn-helix XRE-family like proteins B224_RS04970 SM00382 ATPases associated with a variety of cellular activities B224_RS05010 SM00052 Putative diguanylate phosphodiesterase B224_RS05010 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS05010 SM00091 PAS domain B224_RS05010 SM00267 diguanylate cyclase B224_RS05015 SM00450 Rhodanese Homology Domain B224_RS05065 SM01359 B224_RS05065 B224_RS05065 SM01360 B224_RS05065 B224_RS05080 SM00981 B224_RS05080 B224_RS05165 SM00478 endonuclease III B224_RS05165 SM00525 B224_RS05165 B224_RS05175 SM00900 B224_RS05175 B224_RS05210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS05210 SM00091 PAS domain B224_RS05210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS05250 SM00487 DEAD-like helicases superfamily B224_RS05250 SM00490 helicase superfamily c-terminal domain B224_RS05275 SM00448 cheY-homologous receiver domain B224_RS05275 SM00850 LytTr DNA-binding domain B224_RS05280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_RS05280 SM00387 Histidine kinase-like ATPases B224_RS05285 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS05315 SM00382 ATPases associated with a variety of cellular activities B224_RS05320 SM00382 ATPases associated with a variety of cellular activities B224_RS05330 SM01005 Alanine racemase, C-terminal domain B224_RS05415 SM01321 B224_RS05415 B224_RS05580 SM00382 ATPases associated with a variety of cellular activities B224_RS05650 SM00460 Transglutaminase/protease-like homologues B224_RS05775 SM00493 B224_RS05775 B224_RS05780 SM00387 Histidine kinase-like ATPases B224_RS05845 SM00052 Putative diguanylate phosphodiesterase B224_RS05845 SM00267 diguanylate cyclase B224_RS05895 SM00823 Phosphopantetheine attachment site B224_RS05900 SM00822 B224_RS05900 B224_RS05905 SM00823 Phosphopantetheine attachment site B224_RS05925 SM00382 ATPases associated with a variety of cellular activities B224_RS05970 SM00893 Electron transfer flavoprotein domain B224_RS05975 SM00893 Electron transfer flavoprotein domain B224_RS06065 SM00497 Intron encoded nuclease repeat motif B224_RS06090 SM00530 Helix-turn-helix XRE-family like proteins B224_RS06255 SM01321 B224_RS06255 B224_RS06310 SM01007 Class II Aldolase and Adducin N-terminal domain B224_RS06325 SM00382 ATPases associated with a variety of cellular activities B224_RS06370 SM00342 helix_turn_helix, arabinose operon control protein B224_RS06430 SM00382 ATPases associated with a variety of cellular activities B224_RS06445 SM01126 B224_RS06445 B224_RS06465 SM01126 B224_RS06465 B224_RS06545 SM00360 RNA recognition motif B224_RS06570 SM00091 PAS domain B224_RS06575 SM00448 cheY-homologous receiver domain B224_RS06590 SM00052 Putative diguanylate phosphodiesterase B224_RS06590 SM00267 diguanylate cyclase B224_RS06635 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS06640 SM00411 bacterial (prokaryotic) histone like domain B224_RS06650 SM00028 Tetratricopeptide repeats B224_RS06655 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family B224_RS06665 SM01144 B224_RS06665 B224_RS06690 SM00528 Domain in histone-like proteins of HNS family B224_RS06715 SM01154 B224_RS06715 B224_RS06780 SM00487 DEAD-like helicases superfamily B224_RS06780 SM00490 helicase superfamily c-terminal domain B224_RS06805 SM00530 Helix-turn-helix XRE-family like proteins B224_RS06875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS06995 SM00487 DEAD-like helicases superfamily B224_RS06995 SM00490 helicase superfamily c-terminal domain B224_RS07080 SM00822 B224_RS07080 B224_RS07085 SM00342 helix_turn_helix, arabinose operon control protein B224_RS07085 SM00871 Bacterial transcription activator, effector binding domain B224_RS07115 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS07205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS07205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS07205 SM01049 B224_RS07205 B224_RS07215 SM00091 PAS domain B224_RS07215 SM00387 Histidine kinase-like ATPases B224_RS07220 SM00448 cheY-homologous receiver domain B224_RS07240 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS07260 SM00487 DEAD-like helicases superfamily B224_RS07260 SM00490 helicase superfamily c-terminal domain B224_RS07285 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS07300 SM00763 PrkA AAA domain B224_RS07305 SM00487 DEAD-like helicases superfamily B224_RS07305 SM00490 helicase superfamily c-terminal domain B224_RS07370 SM00387 Histidine kinase-like ATPases B224_RS07370 SM00388 His Kinase A (phosphoacceptor) domain B224_RS07370 SM00448 cheY-homologous receiver domain B224_RS07375 SM00382 ATPases associated with a variety of cellular activities B224_RS07380 SM00382 ATPases associated with a variety of cellular activities B224_RS07450 SM00518 AP endonuclease family 2 B224_RS07480 SM00090 RIO-like kinase B224_RS07500 SM00486 DNA polymerase type-B family B224_RS07545 SM01321 B224_RS07545 B224_RS07590 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_RS07675 SM00422 helix_turn_helix, mercury resistance B224_RS07690 SM00052 Putative diguanylate phosphodiesterase B224_RS07725 SM00327 von Willebrand factor (vWF) type A domain B224_RS07755 SM01322 B224_RS07755 B224_RS07815 SM00382 ATPases associated with a variety of cellular activities B224_RS07830 SM00237 Domains in Na-Ca exchangers and integrin-beta4 B224_RS07865 SM00073 Histidine Phosphotransfer domain B224_RS07865 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS07865 SM00091 PAS domain B224_RS07865 SM00387 Histidine kinase-like ATPases B224_RS07865 SM00388 His Kinase A (phosphoacceptor) domain B224_RS07865 SM00448 cheY-homologous receiver domain B224_RS07870 SM00091 PAS domain B224_RS07875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS07925 SM00491 B224_RS07925 B224_RS07960 SM00341 Helicase and RNase D C-terminal B224_RS07960 SM00474 3'-5' exonuclease B224_RS07975 SM00342 helix_turn_helix, arabinose operon control protein B224_RS07995 SM00382 ATPases associated with a variety of cellular activities B224_RS08025 SM01126 B224_RS08025 B224_RS08035 SM00421 helix_turn_helix, Lux Regulon B224_RS08040 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS08045 SM00382 ATPases associated with a variety of cellular activities B224_RS08045 SM00487 DEAD-like helicases superfamily B224_RS08045 SM00490 helicase superfamily c-terminal domain B224_RS08045 SM00847 Helicase associated domain (HA2) Add an annotation B224_RS08060 SM00387 Histidine kinase-like ATPases B224_RS08060 SM00388 His Kinase A (phosphoacceptor) domain B224_RS08060 SM00448 cheY-homologous receiver domain B224_RS08065 SM00448 cheY-homologous receiver domain B224_RS08080 SM00849 Metallo-beta-lactamase superfamily B224_RS08085 SM00450 Rhodanese Homology Domain B224_RS08100 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B224_RS08105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS08115 SM00880 B224_RS08115 B224_RS08170 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS08175 SM00363 S4 RNA-binding domain B224_RS08210 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. B224_RS08215 SM00822 B224_RS08215 B224_RS08225 SM00825 Beta-ketoacyl synthase B224_RS08245 SM00382 ATPases associated with a variety of cellular activities B224_RS08310 SM00382 ATPases associated with a variety of cellular activities B224_RS08320 SM00981 B224_RS08320 B224_RS08350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_RS08350 SM00245 tail specific protease B224_RS08355 SM00945 ProQ/FINO family B224_RS08410 SM00100 Cyclic nucleotide-monophosphate binding domain B224_RS08410 SM00419 helix_turn_helix, cAMP Regulatory protein B224_RS08445 SM00382 ATPases associated with a variety of cellular activities B224_RS08465 SM00354 helix_turn _helix lactose operon repressor B224_RS08470 SM00267 diguanylate cyclase B224_RS08490 SM00448 cheY-homologous receiver domain B224_RS08495 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS08495 SM00387 Histidine kinase-like ATPases B224_RS08495 SM00388 His Kinase A (phosphoacceptor) domain B224_RS08495 SM00448 cheY-homologous receiver domain B224_RS08500 SM00411 bacterial (prokaryotic) histone like domain B224_RS08505 SM00873 B3/4 domain B224_RS08505 SM00874 tRNA synthetase B5 domain B224_RS08505 SM00896 Ferredoxin-fold anticodon binding domain B224_RS08530 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B224_RS08540 SM00671 Sel1-like repeats. B224_RS08550 SM00434 DNA Topoisomerase IV B224_RS08580 SM00925 MltA specific insert domain B224_RS08605 SM00354 helix_turn _helix lactose operon repressor B224_RS08625 SM00487 DEAD-like helicases superfamily B224_RS08625 SM00490 helicase superfamily c-terminal domain B224_RS08630 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS08645 SM00463 Small MutS-related domain B224_RS08655 SM00855 Phosphoglycerate mutase family B224_RS08675 SM00495 Chitin-binding domain type 3 B224_RS08685 SM00782 PhnA Zinc-Ribbon B224_RS08840 SM00342 helix_turn_helix, arabinose operon control protein B224_RS08860 SM01144 B224_RS08860 B224_RS08875 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. B224_RS08885 SM00487 DEAD-like helicases superfamily B224_RS08885 SM00490 helicase superfamily c-terminal domain B224_RS08915 SM01118 B224_RS08915 B224_RS08940 SM00342 helix_turn_helix, arabinose operon control protein B224_RS08950 SM00822 B224_RS08950 B224_RS08965 SM00267 diguanylate cyclase B224_RS09015 SM00382 ATPases associated with a variety of cellular activities B224_RS09055 SM00857 Resolvase, N terminal domain B224_RS09075 SM00487 DEAD-like helicases superfamily B224_RS09100 SM00885 D5 N terminal like B224_RS09120 SM00822 B224_RS09120 B224_RS09165 SM00878 Biotin carboxylase C-terminal domain B224_RS09175 SM00422 helix_turn_helix, mercury resistance B224_RS09210 SM00100 Cyclic nucleotide-monophosphate binding domain B224_RS09210 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS09215 SM00479 B224_RS09215 B224_RS09230 SM00382 ATPases associated with a variety of cellular activities B224_RS09240 SM00411 bacterial (prokaryotic) histone like domain B224_RS09245 SM00382 ATPases associated with a variety of cellular activities B224_RS09245 SM00464 Found in ATP-dependent protease La (LON) B224_RS09250 SM00382 ATPases associated with a variety of cellular activities B224_RS09250 SM00994 ClpX C4-type zinc finger B224_RS09250 SM01086 C-terminal, D2-small domain, of ClpB protein B224_RS09270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS09280 SM00382 ATPases associated with a variety of cellular activities B224_RS09295 SM00487 DEAD-like helicases superfamily B224_RS09295 SM00490 helicase superfamily c-terminal domain B224_RS09295 SM00982 B224_RS09295 B224_RS09295 SM01058 CarD-like/TRCF domain B224_RS09320 SM00855 Phosphoglycerate mutase family B224_RS09335 SM00364 Leucine-rich repeats, bacterial type B224_RS09335 SM00369 Leucine-rich repeats, typical (most populated) subfamily B224_RS09355 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS09355 SM01240 B224_RS09355 B224_RS09375 SM00642 Alpha-amylase domain B224_RS09390 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS09400 SM00267 diguanylate cyclase B224_RS09400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS09410 SM00091 PAS domain B224_RS09410 SM00382 ATPases associated with a variety of cellular activities B224_RS09450 SM00382 ATPases associated with a variety of cellular activities B224_RS09470 SM00382 ATPases associated with a variety of cellular activities B224_RS09475 SM00382 ATPases associated with a variety of cellular activities B224_RS09485 SM00354 helix_turn _helix lactose operon repressor B224_RS09515 SM00382 ATPases associated with a variety of cellular activities B224_RS09525 SM00843 B224_RS09525 B224_RS09530 SM00344 helix_turn_helix ASNC type B224_RS09535 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B224_RS09535 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B224_RS09545 SM00267 diguanylate cyclase B224_RS09545 SM00448 cheY-homologous receiver domain B224_RS09565 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS09570 SM00382 ATPases associated with a variety of cellular activities B224_RS09570 SM01086 C-terminal, D2-small domain, of ClpB protein B224_RS09580 SM00357 Cold shock protein domain B224_RS09585 SM00859 Semialdehyde dehydrogenase, NAD binding domain B224_RS09600 SM00873 B3/4 domain B224_RS09630 SM00881 CoA binding domain B224_RS09645 SM00861 Transketolase, pyrimidine binding domain B224_RS09685 SM00825 Beta-ketoacyl synthase B224_RS09730 SM00382 ATPases associated with a variety of cellular activities B224_RS09785 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region B224_RS09790 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_RS09790 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B224_RS09830 SM01211 B224_RS09830 B224_RS09835 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS09850 SM00564 beta-propeller repeat B224_RS09870 SM00530 Helix-turn-helix XRE-family like proteins B224_RS09875 SM00028 Tetratricopeptide repeats B224_RS09885 SM00562 B224_RS09885 B224_RS09910 SM00271 DnaJ molecular chaperone homology domain B224_RS09960 SM00028 Tetratricopeptide repeats B224_RS09965 SM00450 Rhodanese Homology Domain B224_RS09980 SM01323 B224_RS09980 B224_RS09995 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_RS10030 SM00095 Transthyretin B224_RS10045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS10050 SM01126 B224_RS10050 B224_RS10125 SM00382 ATPases associated with a variety of cellular activities B224_RS10170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS10185 SM00479 B224_RS10185 B224_RS10205 SM00487 DEAD-like helicases superfamily B224_RS10205 SM00490 helicase superfamily c-terminal domain B224_RS10230 SM01091 Transporter associated domain B224_RS10300 SM00267 diguanylate cyclase B224_RS10310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS10310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS10325 SM00342 helix_turn_helix, arabinose operon control protein B224_RS10350 SM00882 Coenzyme A transferase B224_RS10355 SM00882 Coenzyme A transferase B224_RS10385 SM00829 Enoylreductase B224_RS10455 SM00859 Semialdehyde dehydrogenase, NAD binding domain B224_RS10465 SM00014 Acid phosphatase homologues B224_RS10490 SM00382 ATPases associated with a variety of cellular activities B224_RS10495 SM00382 ATPases associated with a variety of cellular activities B224_RS10515 SM00382 ATPases associated with a variety of cellular activities B224_RS10550 SM00052 Putative diguanylate phosphodiesterase B224_RS10550 SM00267 diguanylate cyclase B224_RS10570 SM00382 ATPases associated with a variety of cellular activities B224_RS10575 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS10600 SM00422 helix_turn_helix, mercury resistance B224_RS10615 SM01351 B224_RS10615 B224_RS10625 SM00487 DEAD-like helicases superfamily B224_RS10625 SM00490 helicase superfamily c-terminal domain B224_RS10655 SM00917 LeuA allosteric (dimerisation) domain B224_RS10660 SM00851 MGS-like domain B224_RS10660 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B224_RS10665 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain B224_RS10705 SM00382 ATPases associated with a variety of cellular activities B224_RS10715 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS10725 SM00382 ATPases associated with a variety of cellular activities B224_RS10745 SM00899 B224_RS10745 B224_RS10790 SM00267 diguanylate cyclase B224_RS10820 SM00840 B224_RS10820 B224_RS10850 SM00635 Bacterial Ig-like domain 2 B224_RS10865 SM01321 B224_RS10865 B224_RS10920 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_RS10920 SM00465 GIY-YIG type nucleases (URI domain) B224_RS10925 SM00421 helix_turn_helix, Lux Regulon B224_RS10925 SM00448 cheY-homologous receiver domain B224_RS10945 SM00382 ATPases associated with a variety of cellular activities B224_RS11090 SM00528 Domain in histone-like proteins of HNS family B224_RS11105 SM00487 DEAD-like helicases superfamily B224_RS11110 SM00506 Appr-1"-p processing enzyme B224_RS11150 SM01321 B224_RS11150 B224_RS11295 SM00491 B224_RS11295 B224_RS11320 SM00098 Alkaline phosphatase homologues B224_RS11325 SM00098 Alkaline phosphatase homologues B224_RS11345 SM00421 helix_turn_helix, Lux Regulon B224_RS11345 SM00448 cheY-homologous receiver domain B224_RS11350 SM00387 Histidine kinase-like ATPases B224_RS11360 SM00267 diguanylate cyclase B224_RS11370 SM01321 B224_RS11370 B224_RS11380 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS11380 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B224_RS11390 SM00382 ATPases associated with a variety of cellular activities B224_RS11420 SM01091 Transporter associated domain B224_RS11430 SM00382 ATPases associated with a variety of cellular activities B224_RS11510 SM00382 ATPases associated with a variety of cellular activities B224_RS11510 SM00448 cheY-homologous receiver domain B224_RS11515 SM00091 PAS domain B224_RS11515 SM00387 Histidine kinase-like ATPases B224_RS11515 SM00388 His Kinase A (phosphoacceptor) domain B224_RS11520 SM00382 ATPases associated with a variety of cellular activities B224_RS11550 SM01321 B224_RS11550 B224_RS11565 SM01321 B224_RS11565 B224_RS11580 SM00047 Lysozyme subfamily 2 B224_RS11625 SM00138 Methyltransferase, chemotaxis proteins B224_RS11630 SM00260 Two component signalling adaptor domain B224_RS11630 SM00448 cheY-homologous receiver domain B224_RS11635 SM00858 B224_RS11635 B224_RS11665 SM00363 S4 RNA-binding domain B224_RS11670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS11680 SM01321 B224_RS11680 B224_RS11725 SM00357 Cold shock protein domain B224_RS11735 SM00861 Transketolase, pyrimidine binding domain B224_RS11760 SM00487 DEAD-like helicases superfamily B224_RS11760 SM00490 helicase superfamily c-terminal domain B224_RS11810 SM01126 B224_RS11810 B224_RS11820 SM00226 Low molecular weight phosphatase family B224_RS11880 SM00448 cheY-homologous receiver domain B224_RS11880 SM00862 Transcriptional regulatory protein, C terminal B224_RS11885 SM00387 Histidine kinase-like ATPases B224_RS11925 SM00481 DNA polymerase alpha chain like domain B224_RS11955 SM00857 Resolvase, N terminal domain B224_RS11995 SM01321 B224_RS11995 B224_RS12040 SM00363 S4 RNA-binding domain B224_RS12060 SM00481 DNA polymerase alpha chain like domain B224_RS12105 SM01321 B224_RS12105 B224_RS12115 SM00984 UDP binding domain B224_RS12180 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS12180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B224_RS12185 SM00382 ATPases associated with a variety of cellular activities B224_RS12205 SM01321 B224_RS12205 B224_RS12270 SM00382 ATPases associated with a variety of cellular activities B224_RS12345 SM00830 Chorismate mutase type II B224_RS12365 SM00420 helix_turn_helix, Deoxyribose operon repressor B224_RS12365 SM01134 B224_RS12365 B224_RS12450 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS12500 SM00871 Bacterial transcription activator, effector binding domain B224_RS12520 SM00363 S4 RNA-binding domain B224_RS12525 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B224_RS12545 SM00487 DEAD-like helicases superfamily B224_RS12545 SM00490 helicase superfamily c-terminal domain B224_RS12550 SM00855 Phosphoglycerate mutase family B224_RS12555 SM00052 Putative diguanylate phosphodiesterase B224_RS12555 SM00267 diguanylate cyclase B224_RS12585 SM00563 Phosphate acyltransferases B224_RS12600 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain B224_RS12610 SM00867 YceI-like domain B224_RS12630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS12630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS12640 SM00852 Probable molybdopterin binding domain B224_RS12655 SM00382 ATPases associated with a variety of cellular activities B224_RS12685 SM00852 Probable molybdopterin binding domain B224_RS12710 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_RS12725 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS12730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS12730 SM00387 Histidine kinase-like ATPases B224_RS12735 SM00421 helix_turn_helix, Lux Regulon B224_RS12735 SM00448 cheY-homologous receiver domain B224_RS12745 SM00464 Found in ATP-dependent protease La (LON) B224_RS12750 SM00387 Histidine kinase-like ATPases B224_RS12750 SM00388 His Kinase A (phosphoacceptor) domain B224_RS12750 SM00448 cheY-homologous receiver domain B224_RS12755 SM00897 FIST N domain B224_RS12755 SM01204 B224_RS12755 B224_RS12785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS12795 SM00479 B224_RS12795 B224_RS12810 SM00849 Metallo-beta-lactamase superfamily B224_RS12815 SM00257 Lysin motif B224_RS12840 SM00354 helix_turn _helix lactose operon repressor B224_RS12920 SM00382 ATPases associated with a variety of cellular activities B224_RS12935 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_RS12990 SM01081 Putative carbohydrate binding domain B224_RS13130 SM00890 Domain of unknown function B224_RS13165 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS13165 SM00876 Biotin and Thiamin Synthesis associated domain B224_RS13175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS13225 SM01091 Transporter associated domain B224_RS13245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS13245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS13325 SM00778 Zinc-binding domain of primase-helicase B224_RS13355 SM00487 DEAD-like helicases superfamily B224_RS13420 SM00448 cheY-homologous receiver domain B224_RS13420 SM00862 Transcriptional regulatory protein, C terminal B224_RS13435 SM00382 ATPases associated with a variety of cellular activities B224_RS13440 SM00382 ATPases associated with a variety of cellular activities B224_RS13475 SM00382 ATPases associated with a variety of cellular activities B224_RS13550 SM00530 Helix-turn-helix XRE-family like proteins B224_RS13600 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS13600 SM00091 PAS domain B224_RS13600 SM00387 Histidine kinase-like ATPases B224_RS13600 SM00388 His Kinase A (phosphoacceptor) domain B224_RS13600 SM00448 cheY-homologous receiver domain B224_RS13630 SM00091 PAS domain B224_RS13630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS13630 SM00387 Histidine kinase-like ATPases B224_RS13630 SM00388 His Kinase A (phosphoacceptor) domain B224_RS13630 SM00448 cheY-homologous receiver domain B224_RS13690 SM00382 ATPases associated with a variety of cellular activities B224_RS13695 SM00710 Parallel beta-helix repeats B224_RS13695 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses B224_RS13785 SM00155 Phospholipase D. Active site motifs. B224_RS13830 SM01321 B224_RS13830 B224_RS13840 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS13855 SM00267 diguanylate cyclase B224_RS13870 SM00530 Helix-turn-helix XRE-family like proteins B224_RS13875 SM01126 B224_RS13875 B224_RS13900 SM00919 Malic enzyme, NAD binding domain B224_RS13900 SM01274 B224_RS13900 B224_RS13905 SM00342 helix_turn_helix, arabinose operon control protein B224_RS13920 SM00267 diguanylate cyclase B224_RS13970 SM00382 ATPases associated with a variety of cellular activities B224_RS13995 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS14010 SM00382 ATPases associated with a variety of cellular activities B224_RS14045 SM00091 PAS domain B224_RS14045 SM00387 Histidine kinase-like ATPases B224_RS14045 SM00388 His Kinase A (phosphoacceptor) domain B224_RS14050 SM00448 cheY-homologous receiver domain B224_RS14050 SM00862 Transcriptional regulatory protein, C terminal B224_RS14060 SM00267 diguanylate cyclase B224_RS14065 SM00382 ATPases associated with a variety of cellular activities B224_RS14075 SM00342 helix_turn_helix, arabinose operon control protein B224_RS14085 SM00448 cheY-homologous receiver domain B224_RS14090 SM00387 Histidine kinase-like ATPases B224_RS14095 SM00919 Malic enzyme, NAD binding domain B224_RS14095 SM01274 B224_RS14095 B224_RS14105 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_RS14155 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_RS14155 SM00292 breast cancer carboxy-terminal domain B224_RS14155 SM00532 Ligase N family B224_RS14160 SM00771 ZipA, C-terminal domain (FtsZ-binding) B224_RS14195 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS14220 SM00642 Alpha-amylase domain B224_RS14230 SM00421 helix_turn_helix, Lux Regulon B224_RS14230 SM00448 cheY-homologous receiver domain B224_RS14255 SM00267 diguanylate cyclase B224_RS14260 SM00977 TilS substrate C-terminal domain B224_RS14275 SM00382 ATPases associated with a variety of cellular activities B224_RS14320 SM00481 DNA polymerase alpha chain like domain B224_RS14350 SM00935 Outer membrane protein (OmpH-like) B224_RS14360 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_RS14405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS14485 SM00028 Tetratricopeptide repeats B224_RS14490 SM00267 diguanylate cyclase B224_RS14500 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B224_RS14500 SM00475 5'-3' exonuclease B224_RS14505 SM01329 B224_RS14505 B224_RS14535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS14535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS14575 SM00900 B224_RS14575 B224_RS14660 SM01126 B224_RS14660 B224_RS14685 SM00421 helix_turn_helix, Lux Regulon B224_RS14735 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_RS14745 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B224_RS14830 SM00422 helix_turn_helix, mercury resistance B224_RS14860 SM00830 Chorismate mutase type II B224_RS14920 SM00382 ATPases associated with a variety of cellular activities B224_RS14965 SM00420 helix_turn_helix, Deoxyribose operon repressor B224_RS14965 SM01134 B224_RS14965 B224_RS14980 SM01007 Class II Aldolase and Adducin N-terminal domain B224_RS15005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS15005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS15030 SM00463 Small MutS-related domain B224_RS15040 SM00342 helix_turn_helix, arabinose operon control protein B224_RS15040 SM00478 endonuclease III B224_RS15040 SM01009 AlkA N-terminal domain B224_RS15105 SM00052 Putative diguanylate phosphodiesterase B224_RS15115 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_RS15135 SM00421 helix_turn_helix, Lux Regulon B224_RS15135 SM00448 cheY-homologous receiver domain B224_RS15165 SM01005 Alanine racemase, C-terminal domain B224_RS15170 SM00382 ATPases associated with a variety of cellular activities B224_RS15175 SM00978 B224_RS15175 B224_RS15200 SM00382 ATPases associated with a variety of cellular activities B224_RS15200 SM00448 cheY-homologous receiver domain B224_RS15210 SM00320 WD40 repeats B224_RS15235 SM00260 Two component signalling adaptor domain B224_RS15235 SM00448 cheY-homologous receiver domain B224_RS15275 SM00100 Cyclic nucleotide-monophosphate binding domain B224_RS15275 SM00419 helix_turn_helix, cAMP Regulatory protein B224_RS15295 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins B224_RS15295 SM00495 Chitin-binding domain type 3 B224_RS15295 SM00636 B224_RS15295 B224_RS15300 SM00387 Histidine kinase-like ATPases B224_RS15300 SM00388 His Kinase A (phosphoacceptor) domain B224_RS15300 SM00448 cheY-homologous receiver domain B224_RS15360 SM00382 ATPases associated with a variety of cellular activities B224_RS15375 SM00984 UDP binding domain B224_RS15390 SM01259 B224_RS15390 B224_RS15405 SM00382 ATPases associated with a variety of cellular activities B224_RS15425 SM00271 DnaJ molecular chaperone homology domain B224_RS15455 SM00650 Ribosomal RNA adenine dimethylases B224_RS15470 SM00530 Helix-turn-helix XRE-family like proteins B224_RS15480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS15515 SM00244 prohibitin homologues B224_RS15520 SM00244 prohibitin homologues B224_RS15540 SM00853 MutL C terminal dimerisation domain B224_RS15540 SM01340 B224_RS15540 B224_RS15545 SM00257 Lysin motif B224_RS15545 SM00646 B224_RS15545 B224_RS15575 SM00382 ATPases associated with a variety of cellular activities B224_RS15575 SM00930 B224_RS15575 B224_RS15595 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. B224_RS15600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS15600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS15605 SM00052 Putative diguanylate phosphodiesterase B224_RS15605 SM00448 cheY-homologous receiver domain B224_RS15610 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS15610 SM00073 Histidine Phosphotransfer domain B224_RS15610 SM00387 Histidine kinase-like ATPases B224_RS15610 SM00388 His Kinase A (phosphoacceptor) domain B224_RS15610 SM00448 cheY-homologous receiver domain B224_RS15630 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS15655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS15660 SM00073 Histidine Phosphotransfer domain B224_RS15660 SM00091 PAS domain B224_RS15660 SM00387 Histidine kinase-like ATPases B224_RS15660 SM00388 His Kinase A (phosphoacceptor) domain B224_RS15660 SM00448 cheY-homologous receiver domain B224_RS15705 SM01130 B224_RS15705 B224_RS15755 SM00014 Acid phosphatase homologues B224_RS15765 SM00917 LeuA allosteric (dimerisation) domain B224_RS15770 SM01329 B224_RS15770 B224_RS15805 SM00382 ATPases associated with a variety of cellular activities B224_RS15810 SM00670 Large family of predicted nucleotide-binding domains B224_RS15850 SM00487 DEAD-like helicases superfamily B224_RS15850 SM00490 helicase superfamily c-terminal domain B224_RS15865 SM00052 Putative diguanylate phosphodiesterase B224_RS15865 SM00267 diguanylate cyclase B224_RS15880 SM00883 Chaperonin 10 Kd subunit B224_RS15920 SM00829 Enoylreductase B224_RS15985 SM00967 RNA 2'-O ribose methyltransferase substrate binding B224_RS15990 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS15990 SM00357 Cold shock protein domain B224_RS15990 SM00955 B224_RS15990 B224_RS15995 SM00267 diguanylate cyclase B224_RS16010 SM00938 Nitrogen regulatory protein P-II B224_RS16035 SM00382 ATPases associated with a variety of cellular activities B224_RS16110 SM00904 Riboflavin kinase B224_RS16125 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B224_RS16155 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_RS16165 SM00927 DNA mismatch repair enzyme MutH B224_RS16195 SM00382 ATPases associated with a variety of cellular activities B224_RS16195 SM00962 SRP54-type protein, GTPase domain B224_RS16195 SM00963 SRP54-type protein, helical bundle domain B224_RS16205 SM01091 Transporter associated domain B224_RS16220 SM00671 Sel1-like repeats. B224_RS16240 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS16245 SM00382 ATPases associated with a variety of cellular activities B224_RS16260 SM00382 ATPases associated with a variety of cellular activities B224_RS16275 SM00938 Nitrogen regulatory protein P-II B224_RS16345 SM01152 B224_RS16345 B224_RS16365 SM00382 ATPases associated with a variety of cellular activities B224_RS16380 SM00487 DEAD-like helicases superfamily B224_RS16380 SM00490 helicase superfamily c-terminal domain B224_RS16420 SM00411 bacterial (prokaryotic) histone like domain B224_RS16435 SM00382 ATPases associated with a variety of cellular activities B224_RS16480 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain B224_RS16485 SM01133 B224_RS16485 B224_RS16535 SM00382 ATPases associated with a variety of cellular activities B224_RS16650 SM01091 Transporter associated domain B224_RS16705 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B224_RS16720 SM00382 ATPases associated with a variety of cellular activities B224_RS16735 SM00533 DNA-binding domain of DNA mismatch repair MUTS family B224_RS16735 SM00534 ATPase domain of DNA mismatch repair MUTS family B224_RS16750 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_RS16800 SM00382 ATPases associated with a variety of cellular activities B224_RS16820 SM00986 Uracil DNA glycosylase superfamily B224_RS16820 SM00987 UreE urease accessory protein, C-terminal domain B224_RS16850 SM00563 Phosphate acyltransferases B224_RS16880 SM00271 DnaJ molecular chaperone homology domain B224_RS16955 SM00434 DNA Topoisomerase IV B224_RS16960 SM00387 Histidine kinase-like ATPases B224_RS16960 SM00433 TopoisomeraseII B224_RS17040 SM00421 helix_turn_helix, Lux Regulon B224_RS17055 SM00357 Cold shock protein domain B224_RS17055 SM00955 B224_RS17055 B224_RS17070 SM00382 ATPases associated with a variety of cellular activities B224_RS17135 SM00487 DEAD-like helicases superfamily B224_RS17135 SM00490 helicase superfamily c-terminal domain B224_RS17190 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B224_RS17295 SM00642 Alpha-amylase domain B224_RS17325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS17325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS17345 SM00421 helix_turn_helix, Lux Regulon B224_RS17355 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS17370 SM00357 Cold shock protein domain B224_RS17375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS17375 SM00387 Histidine kinase-like ATPases B224_RS17375 SM00388 His Kinase A (phosphoacceptor) domain B224_RS17380 SM00448 cheY-homologous receiver domain B224_RS17380 SM00862 Transcriptional regulatory protein, C terminal B224_RS17400 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS17400 SM00091 PAS domain B224_RS17400 SM00267 diguanylate cyclase B224_RS17405 SM00938 Nitrogen regulatory protein P-II B224_RS17415 SM00342 helix_turn_helix, arabinose operon control protein B224_RS17475 SM00530 Helix-turn-helix XRE-family like proteins B224_RS17480 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS17480 SM00866 B224_RS17480 B224_RS17505 SM00382 ATPases associated with a variety of cellular activities B224_RS17515 SM00267 diguanylate cyclase B224_RS17530 SM00342 helix_turn_helix, arabinose operon control protein B224_RS17530 SM00871 Bacterial transcription activator, effector binding domain B224_RS17540 SM01060 B224_RS17540 B224_RS17560 SM00014 Acid phosphatase homologues B224_RS17570 SM00822 B224_RS17570 B224_RS17575 SM00091 PAS domain B224_RS17590 SM01120 B224_RS17590 B224_RS17615 SM00382 ATPases associated with a variety of cellular activities B224_RS17665 SM00838 Elongation factor G C-terminus B224_RS17665 SM00889 Elongation factor G, domain IV B224_RS17705 SM00663 RNA polymerase I subunit A N-terminus B224_RS17730 SM00649 Ribosomal protein L11/L12 B224_RS17735 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. B224_RS17735 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. B224_RS17790 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B224_RS17790 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B224_RS17790 SM00493 B224_RS17790 B224_RS17810 SM00387 Histidine kinase-like ATPases B224_RS17815 SM00448 cheY-homologous receiver domain B224_RS17815 SM00862 Transcriptional regulatory protein, C terminal B224_RS17845 SM00382 ATPases associated with a variety of cellular activities B224_RS17845 SM00448 cheY-homologous receiver domain B224_RS17855 SM00387 Histidine kinase-like ATPases B224_RS17855 SM00388 His Kinase A (phosphoacceptor) domain B224_RS17895 SM00344 helix_turn_helix ASNC type B224_RS17905 SM00382 ATPases associated with a variety of cellular activities B224_RS17905 SM01086 C-terminal, D2-small domain, of ClpB protein B224_RS17915 SM00363 S4 RNA-binding domain B224_RS17945 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B224_RS17945 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B224_RS17955 SM00342 helix_turn_helix, arabinose operon control protein B224_RS17965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS17965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS17970 SM01118 B224_RS17970 B224_RS18035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS18035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS18050 SM00382 ATPases associated with a variety of cellular activities B224_RS18060 SM01038 Beta galactosidase small chain B224_RS18065 SM00354 helix_turn _helix lactose operon repressor B224_RS18110 SM00464 Found in ATP-dependent protease La (LON) B224_RS18115 SM00836 DALR anticodon binding domain B224_RS18115 SM01016 Arginyl tRNA synthetase N terminal dom B224_RS18130 SM00382 ATPases associated with a variety of cellular activities B224_RS18130 SM01086 C-terminal, D2-small domain, of ClpB protein B224_RS18155 SM00382 ATPases associated with a variety of cellular activities B224_RS18190 SM00924 MgtE intracellular N domain B224_RS18220 SM00341 Helicase and RNase D C-terminal B224_RS18220 SM00487 DEAD-like helicases superfamily B224_RS18220 SM00490 helicase superfamily c-terminal domain B224_RS18220 SM00956 B224_RS18220 B224_RS18260 SM00382 ATPases associated with a variety of cellular activities B224_RS18280 SM01230 B224_RS18280 B224_RS18330 SM00642 Alpha-amylase domain B224_RS18350 SM00448 cheY-homologous receiver domain B224_RS18350 SM00862 Transcriptional regulatory protein, C terminal B224_RS18355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS18355 SM00387 Histidine kinase-like ATPases B224_RS18355 SM00388 His Kinase A (phosphoacceptor) domain B224_RS18365 SM00919 Malic enzyme, NAD binding domain B224_RS18365 SM01274 B224_RS18365 B224_RS18380 SM00487 DEAD-like helicases superfamily B224_RS18380 SM00490 helicase superfamily c-terminal domain B224_RS18430 SM00382 ATPases associated with a variety of cellular activities B224_RS18435 SM00563 Phosphate acyltransferases B224_RS18440 SM00563 Phosphate acyltransferases B224_RS18465 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS18470 SM00382 ATPases associated with a variety of cellular activities B224_RS18500 SM00267 diguanylate cyclase B224_RS18505 SM00422 helix_turn_helix, mercury resistance B224_RS18565 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain B224_RS18565 SM01232 B224_RS18565 B224_RS18630 SM00881 CoA binding domain B224_RS18660 SM00360 RNA recognition motif B224_RS18675 SM01001 AIR carboxylase B224_RS18690 SM00448 cheY-homologous receiver domain B224_RS18690 SM00850 LytTr DNA-binding domain B224_RS18695 SM00387 Histidine kinase-like ATPases B224_RS18720 SM00267 diguanylate cyclase B224_RS18760 SM00267 diguanylate cyclase B224_RS18775 SM00072 Guanylate kinase homologues. B224_RS18780 SM01409 B224_RS18780 B224_RS18785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_RS18785 SM00954 Region found in RelA / SpoT proteins B224_RS18805 SM00458 Ricin-type beta-trefoil B224_RS18845 SM00091 PAS domain B224_RS18845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS18845 SM00387 Histidine kinase-like ATPases B224_RS18855 SM00822 B224_RS18855 B224_RS18860 SM00829 Enoylreductase B224_RS18890 SM00387 Histidine kinase-like ATPases B224_RS18890 SM00388 His Kinase A (phosphoacceptor) domain B224_RS18895 SM00448 cheY-homologous receiver domain B224_RS18895 SM00862 Transcriptional regulatory protein, C terminal B224_RS18905 SM00342 helix_turn_helix, arabinose operon control protein B224_RS18935 SM00342 helix_turn_helix, arabinose operon control protein B224_RS18950 SM00387 Histidine kinase-like ATPases B224_RS18950 SM00433 TopoisomeraseII B224_RS18960 SM00480 DNA polymerase III beta subunit B224_RS18965 SM00382 ATPases associated with a variety of cellular activities B224_RS18965 SM00760 Bacterial dnaA protein helix-turn-helix domain B224_RS18970 SM00062 Bacterial periplasmic substrate-binding proteins B224_RS18980 SM00382 ATPases associated with a variety of cellular activities B224_RS19015 SM00382 ATPases associated with a variety of cellular activities B224_RS19020 SM00382 ATPases associated with a variety of cellular activities B224_RS19035 SM01228 B224_RS19035 B224_RS19050 SM00470 ParB-like nuclease domain B224_RS19090 SM00382 ATPases associated with a variety of cellular activities B224_RS19115 SM00387 Histidine kinase-like ATPases B224_RS19115 SM00388 His Kinase A (phosphoacceptor) domain B224_RS19120 SM00448 cheY-homologous receiver domain B224_RS19120 SM00862 Transcriptional regulatory protein, C terminal B224_RS19125 SM00420 helix_turn_helix, Deoxyribose operon repressor B224_RS19125 SM01134 B224_RS19125 B224_RS19135 SM00421 helix_turn_helix, Lux Regulon B224_RS19200 SM00354 helix_turn _helix lactose operon repressor B224_RS19205 SM01038 Beta galactosidase small chain B224_RS19250 SM00829 Enoylreductase B224_RS19280 SM00382 ATPases associated with a variety of cellular activities B224_RS19325 SM00342 helix_turn_helix, arabinose operon control protein B224_RS19340 SM00530 Helix-turn-helix XRE-family like proteins B224_RS19350 SM00530 Helix-turn-helix XRE-family like proteins B224_RS19425 SM00257 Lysin motif B224_RS19480 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_RS19495 SM00382 ATPases associated with a variety of cellular activities B224_RS19495 SM00448 cheY-homologous receiver domain B224_RS19500 SM00091 PAS domain B224_RS19500 SM00387 Histidine kinase-like ATPases B224_RS19500 SM00388 His Kinase A (phosphoacceptor) domain B224_RS19510 SM01230 B224_RS19510 B224_RS19550 SM00487 DEAD-like helicases superfamily B224_RS19550 SM00490 helicase superfamily c-terminal domain B224_RS19555 SM00155 Phospholipase D. Active site motifs. B224_RS19580 SM00354 helix_turn _helix lactose operon repressor B224_RS19600 SM00450 Rhodanese Homology Domain B224_RS19640 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS19640 SM00732 Likely ribonuclease with RNase H fold. B224_RS19650 SM00448 cheY-homologous receiver domain B224_RS19650 SM00862 Transcriptional regulatory protein, C terminal B224_RS19655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS19655 SM00387 Histidine kinase-like ATPases B224_RS19655 SM00388 His Kinase A (phosphoacceptor) domain B224_RS19665 SM01403 B224_RS19665 B224_RS19685 SM01382 B224_RS19685 B224_RS19685 SM01383 B224_RS19685 B224_RS19700 SM00322 K homology RNA-binding domain B224_RS19720 SM01374 B224_RS19720 B224_RS19780 SM00363 S4 RNA-binding domain B224_RS19780 SM01390 B224_RS19780 B224_RS19785 SM00662 RNA polymerases D B224_RS19880 SM01004 Delta-aminolevulinic acid dehydratase B224_RS19890 SM00052 Putative diguanylate phosphodiesterase B224_RS19890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_RS19890 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS19890 SM00091 PAS domain B224_RS19890 SM00267 diguanylate cyclase B224_RS19915 SM00487 DEAD-like helicases superfamily B224_RS19915 SM00490 helicase superfamily c-terminal domain B224_RS19925 SM00357 Cold shock protein domain B224_RS19925 SM00382 ATPases associated with a variety of cellular activities B224_RS19925 SM00959 Rho termination factor, N-terminal domain B224_RS19965 SM00450 Rhodanese Homology Domain B224_RS19975 SM00342 helix_turn_helix, arabinose operon control protein B224_RS19980 SM00382 ATPases associated with a variety of cellular activities B224_RS19985 SM00382 ATPases associated with a variety of cellular activities B224_RS20005 SM00354 helix_turn _helix lactose operon repressor B224_RS20010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_RS20010 SM00382 ATPases associated with a variety of cellular activities B224_RS20015 SM00849 Metallo-beta-lactamase superfamily B224_RS20060 SM00836 DALR anticodon binding domain B224_RS20120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS20120 SM00387 Histidine kinase-like ATPases B224_RS20120 SM00388 His Kinase A (phosphoacceptor) domain B224_RS20125 SM00448 cheY-homologous receiver domain B224_RS20125 SM00862 Transcriptional regulatory protein, C terminal B224_RS20210 SM00052 Putative diguanylate phosphodiesterase B224_RS20210 SM00267 diguanylate cyclase B224_RS20220 SM00829 Enoylreductase B224_RS20265 SM00829 Enoylreductase B224_RS20290 SM00563 Phosphate acyltransferases B224_RS20320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS20320 SM00387 Histidine kinase-like ATPases B224_RS20320 SM00388 His Kinase A (phosphoacceptor) domain B224_RS20325 SM00448 cheY-homologous receiver domain B224_RS20325 SM00862 Transcriptional regulatory protein, C terminal B224_RS20335 SM00971 Serine acetyltransferase, N-terminal B224_RS20355 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B224_RS20355 SM00474 3'-5' exonuclease B224_RS20355 SM00475 5'-3' exonuclease B224_RS20355 SM00482 DNA polymerase A domain B224_RS20415 SM00267 diguanylate cyclase B224_RS20420 SM00487 DEAD-like helicases superfamily B224_RS20420 SM00490 helicase superfamily c-terminal domain B224_RS20515 SM00028 Tetratricopeptide repeats B224_RS20515 SM00267 diguanylate cyclase B224_RS20520 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_RS20520 SM00091 PAS domain B224_RS20520 SM00267 diguanylate cyclase B224_RS20525 SM00327 von Willebrand factor (vWF) type A domain B224_RS20530 SM00382 ATPases associated with a variety of cellular activities B224_RS20575 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS20625 SM00344 helix_turn_helix ASNC type B224_RS20640 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_RS20645 SM00829 Enoylreductase B224_RS20665 SM00642 Alpha-amylase domain B224_RS20670 SM00642 Alpha-amylase domain B224_RS20680 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_RS20820 SM00382 ATPases associated with a variety of cellular activities B224_RS20825 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_RS20835 SM00822 B224_RS20835 B224_RS20875 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS20895 SM00487 DEAD-like helicases superfamily B224_RS20895 SM00490 helicase superfamily c-terminal domain B224_RS20935 SM00028 Tetratricopeptide repeats B224_RS21025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_RS21025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_RS21025 SM01049 B224_RS21025 B224_RS21045 SM00382 ATPases associated with a variety of cellular activities B224_RS21105 SM00530 Helix-turn-helix XRE-family like proteins B224_RS21120 SM00344 helix_turn_helix ASNC type B224_RS21140 SM00852 Probable molybdopterin binding domain B224_RS21205 SM01219 B224_RS21205 B224_RS21300 SM00267 diguanylate cyclase B224_RS21345 SM00876 Biotin and Thiamin Synthesis associated domain B224_RS21415 SM00448 cheY-homologous receiver domain B224_RS21415 SM00862 Transcriptional regulatory protein, C terminal B224_RS21420 SM00388 His Kinase A (phosphoacceptor) domain B224_RS21430 SM01018 B12 binding domain B224_RS21485 SM00382 ATPases associated with a variety of cellular activities B224_RS21560 SM00316 Ribosomal protein S1-like RNA-binding domain B224_RS21595 SM00965 Secretin and TonB N terminus short domain B224_RS21625 SM00052 Putative diguanylate phosphodiesterase B224_RS21625 SM00267 diguanylate cyclase B224_RS21635 SM00052 Putative diguanylate phosphodiesterase B224_RS21670 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_RS21670 SM00866 B224_RS21670 B224_RS21675 SM00947 Carbonic anhydrase B224_RS21690 SM00382 ATPases associated with a variety of cellular activities B224_RS21695 SM00382 ATPases associated with a variety of cellular activities B224_RS21695 SM00962 SRP54-type protein, GTPase domain B224_RS21695 SM00963 SRP54-type protein, helical bundle domain B224_RS21800 SM00060 Fibronectin type 3 domain B224_RS21835 SM00528 Domain in histone-like proteins of HNS family