locus-tag class description EFI48_RS00005 PF02874 ATP synthase alpha/beta family, beta-barrel domain EFI48_RS00005 PF00306 ATP synthase alpha/beta chain, C terminal domain EFI48_RS00005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EFI48_RS00010 PF00231 ATP synthase EFI48_RS00015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EFI48_RS00015 PF02874 ATP synthase alpha/beta family, beta-barrel domain EFI48_RS00020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EFI48_RS00020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EFI48_RS00025 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS00025 PF12804 MobA-like NTP transferase domain EFI48_RS00025 PF14602 Hexapeptide repeat of succinyl-transferase EFI48_RS00030 PF02397 Bacterial sugar transferase EFI48_RS00045 PF13614 AAA domain EFI48_RS00045 PF13807 G-rich domain on putative tyrosine kinase EFI48_RS00045 PF02706 Chain length determinant protein EFI48_RS00075 PF00534 Glycosyl transferases group 1 EFI48_RS00075 PF13439 Glycosyltransferase Family 4 EFI48_RS00090 PF06123 Inner membrane protein CreD EFI48_RS00100 PF00905 Penicillin binding protein transpeptidase domain EFI48_RS00105 PF00672 HAMP domain EFI48_RS00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS00105 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS00110 PF00072 Response regulator receiver domain EFI48_RS00110 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS00115 PF08220 DeoR-like helix-turn-helix domain EFI48_RS00115 PF00455 DeoR C terminal sensor domain EFI48_RS00120 PF01380 SIS domain EFI48_RS00125 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS00125 PF03472 Autoinducer binding domain EFI48_RS00135 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS00140 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS00145 PF02472 Biopolymer transport protein ExbD/TolR EFI48_RS00150 PF03544 Gram-negative bacterial TonB protein C-terminal EFI48_RS00185 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EFI48_RS00190 PF07969 Amidohydrolase family EFI48_RS00195 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EFI48_RS00200 PF01209 ubiE/COQ5 methyltransferase family EFI48_RS00205 PF02036 SCP-2 sterol transfer family EFI48_RS00210 PF03109 ABC1 family EFI48_RS00215 PF02416 mttA/Hcf106 family EFI48_RS00220 PF02416 mttA/Hcf106 family EFI48_RS00225 PF00902 Sec-independent protein translocase protein (TatC) EFI48_RS00230 PF01026 TatD related DNase EFI48_RS00235 PF00490 Delta-aminolevulinic acid dehydratase EFI48_RS00240 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EFI48_RS00240 PF18416 N-acetylglucosamine binding protein domain 2 EFI48_RS00245 PF00704 Glycosyl hydrolases family 18 EFI48_RS00250 PF01432 Peptidase family M3 EFI48_RS00255 PF00563 EAL domain EFI48_RS00255 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS00255 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS00260 PF04445 Putative SAM-dependent methyltransferase EFI48_RS00270 PF02541 Ppx/GppA phosphatase family EFI48_RS00275 PF00270 DEAD/DEAH box helicase EFI48_RS00275 PF00271 Helicase conserved C-terminal domain EFI48_RS00280 PF00085 Thioredoxin EFI48_RS00285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EFI48_RS00285 PF07498 Rho termination factor, N-terminal domain EFI48_RS00285 PF07497 Rho termination factor, RNA-binding domain EFI48_RS00295 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EFI48_RS00300 PF00175 Oxidoreductase NAD-binding domain EFI48_RS00305 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS00305 PF08448 PAS fold EFI48_RS00305 PF00563 EAL domain EFI48_RS00310 PF04380 Membrane fusogenic activity EFI48_RS00315 PF12262 Bacterial virulence factor lipase N-terminal EFI48_RS00320 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease EFI48_RS00320 PF01694 Rhomboid family EFI48_RS00325 PF00581 Rhodanese-like domain EFI48_RS00330 PF00005 ABC transporter EFI48_RS00335 PF00005 ABC transporter EFI48_RS00335 PF12399 Branched-chain amino acid ATP-binding cassette transporter EFI48_RS00340 PF02653 Branched-chain amino acid transport system / permease component EFI48_RS00340 PF11862 Domain of unknown function (DUF3382) EFI48_RS00345 PF02653 Branched-chain amino acid transport system / permease component EFI48_RS00350 PF13458 Periplasmic binding protein EFI48_RS00355 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS00360 PF11975 Family 4 glycosyl hydrolase C-terminal domain EFI48_RS00360 PF02056 Family 4 glycosyl hydrolase EFI48_RS00365 PF02378 Phosphotransferase system, EIIC EFI48_RS00365 PF00367 phosphotransferase system, EIIB EFI48_RS00370 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS00370 PF07702 UTRA domain EFI48_RS00375 PF00672 HAMP domain EFI48_RS00375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS00385 PF05932 Tir chaperone protein (CesT) family EFI48_RS00395 PF03496 ADP-ribosyltransferase exoenzyme EFI48_RS00395 PF03545 Yersinia virulence determinant (YopE) EFI48_RS00400 PF00563 EAL domain EFI48_RS00400 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS00400 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS00410 PF02092 Glycyl-tRNA synthetase beta subunit EFI48_RS00410 PF05746 DALR anticodon binding domain EFI48_RS00415 PF02091 Glycyl-tRNA synthetase alpha subunit EFI48_RS00420 PF03352 Methyladenine glycosylase EFI48_RS00425 PF00691 OmpA family EFI48_RS00425 PF13488 Glycine zipper EFI48_RS00430 PF01042 Endoribonuclease L-PSP EFI48_RS00435 PF01206 Sulfurtransferase TusA EFI48_RS00445 PF01547 Bacterial extracellular solute-binding protein EFI48_RS00450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS00450 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS00450 PF00672 HAMP domain EFI48_RS00455 PF00072 Response regulator receiver domain EFI48_RS00455 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS00460 PF02803 Thiolase, C-terminal domain EFI48_RS00460 PF00108 Thiolase, N-terminal domain EFI48_RS00465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EFI48_RS00465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EFI48_RS00465 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS00470 PF00501 AMP-binding enzyme EFI48_RS00470 PF13193 AMP-binding enzyme C-terminal domain EFI48_RS00475 PF00557 Metallopeptidase family M24 EFI48_RS00480 PF01205 Uncharacterized protein family UPF0029 EFI48_RS00480 PF09186 Domain of unknown function (DUF1949) EFI48_RS00485 PF02386 Cation transport protein EFI48_RS00490 PF12724 Flavodoxin domain EFI48_RS00525 PF00899 ThiF family EFI48_RS00530 PF02657 Fe-S metabolism associated domain EFI48_RS00535 PF00266 Aminotransferase class-V EFI48_RS00540 PF00580 UvrD/REP helicase N-terminal domain EFI48_RS00540 PF13361 UvrD-like helicase C-terminal domain EFI48_RS00545 PF00563 EAL domain EFI48_RS00545 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS00545 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS00550 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EFI48_RS00555 PF08240 Alcohol dehydrogenase GroES-like domain EFI48_RS00555 PF00107 Zinc-binding dehydrogenase EFI48_RS00560 PF00155 Aminotransferase class I and II EFI48_RS00565 PF08360 QacR-like protein, C-terminal region EFI48_RS00565 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS00570 PF01370 NAD dependent epimerase/dehydratase family EFI48_RS00585 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) EFI48_RS00610 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EFI48_RS00610 PF12833 Helix-turn-helix domain EFI48_RS00615 PF01810 LysE type translocator EFI48_RS00645 PF14001 YdfZ protein EFI48_RS00660 PF13361 UvrD-like helicase C-terminal domain EFI48_RS00660 PF00580 UvrD/REP helicase N-terminal domain EFI48_RS00665 PF02608 ABC transporter substrate-binding protein PnrA-like EFI48_RS00670 PF00005 ABC transporter EFI48_RS00675 PF02653 Branched-chain amino acid transport system / permease component EFI48_RS00680 PF02653 Branched-chain amino acid transport system / permease component EFI48_RS00690 PF02872 5'-nucleotidase, C-terminal domain EFI48_RS00690 PF00149 Calcineurin-like phosphoesterase EFI48_RS00700 PF01769 Divalent cation transporter EFI48_RS00700 PF00571 CBS domain EFI48_RS00700 PF03448 MgtE intracellular N domain EFI48_RS00705 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EFI48_RS00705 PF14824 Sirohaem biosynthesis protein central EFI48_RS00705 PF10414 Sirohaem synthase dimerisation region EFI48_RS00710 PF01226 Formate/nitrite transporter EFI48_RS00715 PF13806 Rieske-like [2Fe-2S] domain EFI48_RS00720 PF04324 BFD-like [2Fe-2S] binding domain EFI48_RS00720 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EFI48_RS00720 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EFI48_RS00720 PF18267 Rubredoxin NAD+ reductase C-terminal domain EFI48_RS00720 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS00735 PF00005 ABC transporter EFI48_RS00740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS00750 PF10431 C-terminal, D2-small domain, of ClpB protein EFI48_RS00750 PF07724 AAA domain (Cdc48 subfamily) EFI48_RS00750 PF00004 ATPase family associated with various cellular activities (AAA) EFI48_RS00755 PF00227 Proteasome subunit EFI48_RS00765 PF03485 Arginyl tRNA synthetase N terminal domain EFI48_RS00765 PF00750 tRNA synthetases class I (R) EFI48_RS00765 PF05746 DALR anticodon binding domain EFI48_RS00775 PF04545 Sigma-70, region 4 EFI48_RS00775 PF04542 Sigma-70 region 2 EFI48_RS00785 PF02673 Bacitracin resistance protein BacA EFI48_RS00790 PF01263 Aldose 1-epimerase EFI48_RS00795 PF00288 GHMP kinases N terminal domain EFI48_RS00795 PF08544 GHMP kinases C terminal EFI48_RS00795 PF10509 Galactokinase galactose-binding signature EFI48_RS00800 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain EFI48_RS00800 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain EFI48_RS00805 PF16363 GDP-mannose 4,6 dehydratase EFI48_RS00810 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS00815 PF00703 Glycosyl hydrolases family 2 EFI48_RS00815 PF02929 Beta galactosidase small chain EFI48_RS00815 PF02837 Glycosyl hydrolases family 2, sugar binding domain EFI48_RS00815 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EFI48_RS00815 PF16353 Domain of unknown function(DUF4981) EFI48_RS00820 PF13407 Periplasmic binding protein domain EFI48_RS00825 PF00005 ABC transporter EFI48_RS00830 PF02653 Branched-chain amino acid transport system / permease component EFI48_RS00835 PF00672 HAMP domain EFI48_RS00835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS00835 PF02743 Cache domain EFI48_RS00840 PF05958 tRNA (Uracil-5-)-methyltransferase EFI48_RS00855 PF00128 Alpha amylase, catalytic domain EFI48_RS00855 PF02903 Alpha amylase, N-terminal ig-like domain EFI48_RS00870 PF00012 Hsp70 protein EFI48_RS00875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EFI48_RS00875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EFI48_RS00880 PF05981 CreA protein EFI48_RS00895 PF01258 Prokaryotic dksA/traR C4-type zinc finger EFI48_RS00900 PF00120 Glutamine synthetase, catalytic domain EFI48_RS00905 PF00202 Aminotransferase class-III EFI48_RS00910 PF13416 Bacterial extracellular solute-binding protein EFI48_RS00915 PF13416 Bacterial extracellular solute-binding protein EFI48_RS00920 PF08402 TOBE domain EFI48_RS00920 PF00005 ABC transporter EFI48_RS00925 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS00930 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS00935 PF03475 3-alpha domain EFI48_RS00935 PF03473 MOSC domain EFI48_RS00950 PF03061 Thioesterase superfamily EFI48_RS00955 PF00570 HRDC domain EFI48_RS00955 PF16124 RecQ zinc-binding EFI48_RS00955 PF09382 RQC domain EFI48_RS00955 PF00270 DEAD/DEAH box helicase EFI48_RS00955 PF00271 Helicase conserved C-terminal domain EFI48_RS00960 PF00034 Cytochrome c EFI48_RS00965 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EFI48_RS00975 PF02592 Putative vitamin uptake transporter EFI48_RS00980 PF03737 Aldolase/RraA EFI48_RS00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS00985 PF00672 HAMP domain EFI48_RS01000 PF01197 Ribosomal protein L31 EFI48_RS01005 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EFI48_RS01005 PF18074 Primosomal protein N C-terminal domain EFI48_RS01005 PF17764 3′ DNA-binding domain (3′BD) EFI48_RS01005 PF00271 Helicase conserved C-terminal domain EFI48_RS01005 PF00270 DEAD/DEAH box helicase EFI48_RS01015 PF13460 NAD(P)H-binding EFI48_RS01015 PF11066 Protein of unknown function (DUF2867) EFI48_RS01020 PF03222 Tryptophan/tyrosine permease family EFI48_RS01025 PF00390 Malic enzyme, N-terminal domain EFI48_RS01025 PF03949 Malic enzyme, NAD binding domain EFI48_RS01030 PF03631 Virulence factor BrkB EFI48_RS01035 PF02580 D-Tyr-tRNA(Tyr) deacylase EFI48_RS01045 PF00583 Acetyltransferase (GNAT) family EFI48_RS01045 PF09500 Putative thioesterase (yiiD_Cterm) EFI48_RS01055 PF00270 DEAD/DEAH box helicase EFI48_RS01055 PF17191 RecG wedge domain EFI48_RS01055 PF00271 Helicase conserved C-terminal domain EFI48_RS01060 PF13091 PLD-like domain EFI48_RS01065 PF02447 GntP family permease EFI48_RS01070 PF01202 Shikimate kinase EFI48_RS01075 PF00920 Dehydratase family EFI48_RS01080 PF01081 KDPG and KHG aldolase EFI48_RS01085 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS01085 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EFI48_RS01095 PF01551 Peptidase family M23 EFI48_RS01100 PF01676 Metalloenzyme superfamily EFI48_RS01100 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EFI48_RS01105 PF00581 Rhodanese-like domain EFI48_RS01110 PF02556 Preprotein translocase subunit SecB EFI48_RS01115 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EFI48_RS01115 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EFI48_RS01120 PF01521 Iron-sulphur cluster biosynthesis EFI48_RS01120 PF01106 NifU-like domain EFI48_RS01125 PF00156 Phosphoribosyl transferase domain EFI48_RS01130 PF00561 alpha/beta hydrolase fold EFI48_RS01150 PF09371 Tex-like protein N-terminal domain EFI48_RS01150 PF16921 Tex protein YqgF-like domain EFI48_RS01150 PF00575 S1 RNA binding domain EFI48_RS01150 PF17674 HHH domain EFI48_RS01155 PF01272 Transcription elongation factor, GreA/GreB, C-term EFI48_RS01155 PF03449 Transcription elongation factor, N-terminal EFI48_RS01160 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS01160 PF00072 Response regulator receiver domain EFI48_RS01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS01165 PF00672 HAMP domain EFI48_RS01165 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS01175 PF00338 Ribosomal protein S10p/S20e EFI48_RS01180 PF00297 Ribosomal protein L3 EFI48_RS01185 PF00573 Ribosomal protein L4/L1 family EFI48_RS01190 PF00276 Ribosomal protein L23 EFI48_RS01195 PF03947 Ribosomal Proteins L2, C-terminal domain EFI48_RS01195 PF00181 Ribosomal Proteins L2, RNA binding domain EFI48_RS01200 PF00203 Ribosomal protein S19 EFI48_RS01205 PF00237 Ribosomal protein L22p/L17e EFI48_RS01210 PF07650 KH domain EFI48_RS01210 PF00189 Ribosomal protein S3, C-terminal domain EFI48_RS01215 PF00252 Ribosomal protein L16p/L10e EFI48_RS01220 PF00831 Ribosomal L29 protein EFI48_RS01225 PF00366 Ribosomal protein S17 EFI48_RS01230 PF00238 Ribosomal protein L14p/L23e EFI48_RS01235 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EFI48_RS01235 PF00467 KOW motif EFI48_RS01240 PF00673 ribosomal L5P family C-terminus EFI48_RS01240 PF00281 Ribosomal protein L5 EFI48_RS01245 PF00253 Ribosomal protein S14p/S29e EFI48_RS01250 PF00410 Ribosomal protein S8 EFI48_RS01255 PF00347 Ribosomal protein L6 EFI48_RS01260 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EFI48_RS01265 PF03719 Ribosomal protein S5, C-terminal domain EFI48_RS01265 PF00333 Ribosomal protein S5, N-terminal domain EFI48_RS01270 PF00327 Ribosomal protein L30p/L7e EFI48_RS01275 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EFI48_RS01280 PF00344 SecY translocase EFI48_RS01285 PF00444 Ribosomal protein L36 EFI48_RS01290 PF00416 Ribosomal protein S13/S18 EFI48_RS01295 PF00411 Ribosomal protein S11 EFI48_RS01300 PF01479 S4 domain EFI48_RS01300 PF00163 Ribosomal protein S4/S9 N-terminal domain EFI48_RS01305 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EFI48_RS01305 PF01000 RNA polymerase Rpb3/RpoA insert domain EFI48_RS01305 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EFI48_RS01310 PF01196 Ribosomal protein L17 EFI48_RS01350 PF00593 TonB dependent receptor EFI48_RS01350 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS01355 PF17151 Periplasmic sensor domain EFI48_RS01355 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS01360 PF00672 HAMP domain EFI48_RS01360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS01360 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS01365 PF00072 Response regulator receiver domain EFI48_RS01365 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS01380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS01380 PF03466 LysR substrate binding domain EFI48_RS01390 PF02678 Pirin EFI48_RS01390 PF17954 Quercetinase C-terminal cupin domain EFI48_RS01395 PF07681 DoxX EFI48_RS01400 PF17946 RecC C-terminal domain EFI48_RS01405 PF12705 PD-(D/E)XK nuclease superfamily EFI48_RS01405 PF00580 UvrD/REP helicase N-terminal domain EFI48_RS01405 PF13361 UvrD-like helicase C-terminal domain EFI48_RS01410 PF13538 UvrD-like helicase C-terminal domain EFI48_RS01420 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS01435 PF07702 UTRA domain EFI48_RS01435 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS01450 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS01460 PF08402 TOBE domain EFI48_RS01460 PF00005 ABC transporter EFI48_RS01470 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS01490 PF01053 Cys/Met metabolism PLP-dependent enzyme EFI48_RS01500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS01500 PF12793 Sugar transport-related sRNA regulator N-term EFI48_RS01505 PF00141 Peroxidase EFI48_RS01520 PF03280 Proteobacterial lipase chaperone protein EFI48_RS01525 PF00561 alpha/beta hydrolase fold EFI48_RS01530 PF01479 S4 domain EFI48_RS01530 PF00579 tRNA synthetases class I (W and Y) EFI48_RS01535 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS01555 PF06628 Catalase-related immune-responsive EFI48_RS01555 PF00199 Catalase EFI48_RS01560 PF00583 Acetyltransferase (GNAT) family EFI48_RS01580 PF10458 Valyl tRNA synthetase tRNA binding arm EFI48_RS01580 PF08264 Anticodon-binding domain of tRNA EFI48_RS01580 PF00133 tRNA synthetases class I (I, L, M and V) EFI48_RS01585 PF04364 DNA polymerase III chi subunit, HolC EFI48_RS01590 PF00883 Cytosol aminopeptidase family, catalytic domain EFI48_RS01590 PF02789 Cytosol aminopeptidase family, N-terminal domain EFI48_RS01595 PF03739 Lipopolysaccharide export system permease LptF/LptG EFI48_RS01600 PF03739 Lipopolysaccharide export system permease LptF/LptG EFI48_RS01615 PF13356 Arm DNA-binding domain EFI48_RS01615 PF00589 Phage integrase family EFI48_RS01695 PF00593 TonB dependent receptor EFI48_RS01695 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS01705 PF00768 D-alanyl-D-alanine carboxypeptidase EFI48_RS01710 PF13520 Amino acid permease EFI48_RS01730 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded EFI48_RS01745 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase EFI48_RS01750 PF02602 Uroporphyrinogen-III synthase HemD EFI48_RS01755 PF03900 Porphobilinogen deaminase, C-terminal domain EFI48_RS01755 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EFI48_RS01760 PF12633 Adenylate cyclase NT domain EFI48_RS01760 PF01295 Adenylate cyclase, class-I EFI48_RS01765 PF02230 Phospholipase/Carboxylesterase EFI48_RS01770 PF01491 Frataxin-like domain EFI48_RS01780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EFI48_RS01780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EFI48_RS01785 PF01678 Diaminopimelate epimerase EFI48_RS01795 PF02899 Phage integrase, N-terminal SAM-like domain EFI48_RS01795 PF00589 Phage integrase family EFI48_RS01800 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS01810 PF13545 Crp-like helix-turn-helix domain EFI48_RS01810 PF00027 Cyclic nucleotide-binding domain EFI48_RS01820 PF07722 Peptidase C26 EFI48_RS01825 PF04751 Protein of unknown function (DUF615) EFI48_RS01830 PF01523 Putative modulator of DNA gyrase EFI48_RS01840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EFI48_RS01845 PF01722 BolA-like protein EFI48_RS01855 PF05494 MlaC protein EFI48_RS01860 PF02470 MlaD protein EFI48_RS01865 PF02405 Permease MlaE EFI48_RS01870 PF00005 ABC transporter EFI48_RS01875 PF01380 SIS domain EFI48_RS01875 PF00571 CBS domain EFI48_RS01885 PF06835 Lipopolysaccharide-assembly, LptC-related EFI48_RS01890 PF03968 OstA-like protein EFI48_RS01895 PF12399 Branched-chain amino acid ATP-binding cassette transporter EFI48_RS01895 PF00005 ABC transporter EFI48_RS01900 PF04552 Sigma-54, DNA binding domain EFI48_RS01900 PF04963 Sigma-54 factor, core binding domain EFI48_RS01900 PF00309 Sigma-54 factor, Activator interacting domain (AID) EFI48_RS01905 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EFI48_RS01910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EFI48_RS01915 PF03668 P-loop ATPase protein family EFI48_RS01920 PF00381 PTS HPr component phosphorylation site EFI48_RS01925 PF05043 Mga helix-turn-helix domain EFI48_RS01925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EFI48_RS01925 PF00874 PRD domain EFI48_RS01925 PF08279 HTH domain EFI48_RS01930 PF07071 KDGP aldolase EFI48_RS01935 PF03841 L-seryl-tRNA selenium transferase EFI48_RS01940 PF01979 Amidohydrolase family EFI48_RS01970 PF13180 PDZ domain EFI48_RS01975 PF00595 PDZ domain EFI48_RS01975 PF13180 PDZ domain EFI48_RS01985 PF03969 AFG1-like ATPase EFI48_RS01990 PF00572 Ribosomal protein L13 EFI48_RS01995 PF00380 Ribosomal protein S9/S16 EFI48_RS02000 PF00355 Rieske [2Fe-2S] domain EFI48_RS02000 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EFI48_RS02005 PF00033 Cytochrome b/b6/petB EFI48_RS02005 PF00032 Cytochrome b(C-terminal)/b6/petD EFI48_RS02010 PF02167 Cytochrome C1 family EFI48_RS02015 PF02798 Glutathione S-transferase, N-terminal domain EFI48_RS02015 PF00043 Glutathione S-transferase, C-terminal domain EFI48_RS02020 PF04386 Stringent starvation protein B EFI48_RS02030 PF13580 SIS domain EFI48_RS02035 PF02021 Uncharacterised protein family UPF0102 EFI48_RS02040 PF04348 LppC putative lipoprotein EFI48_RS02045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EFI48_RS02055 PF02381 MraZ protein, putative antitoxin-like EFI48_RS02060 PF01795 MraW methylase family EFI48_RS02065 PF04999 Cell division protein FtsL EFI48_RS02070 PF00905 Penicillin binding protein transpeptidase domain EFI48_RS02070 PF03717 Penicillin-binding Protein dimerisation domain EFI48_RS02075 PF01225 Mur ligase family, catalytic domain EFI48_RS02075 PF02875 Mur ligase family, glutamate ligase domain EFI48_RS02075 PF08245 Mur ligase middle domain EFI48_RS02080 PF02875 Mur ligase family, glutamate ligase domain EFI48_RS02080 PF01225 Mur ligase family, catalytic domain EFI48_RS02080 PF08245 Mur ligase middle domain EFI48_RS02085 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EFI48_RS02085 PF00953 Glycosyl transferase family 4 EFI48_RS02090 PF02875 Mur ligase family, glutamate ligase domain EFI48_RS02090 PF08245 Mur ligase middle domain EFI48_RS02095 PF01098 Cell cycle protein EFI48_RS02100 PF03033 Glycosyltransferase family 28 N-terminal domain EFI48_RS02100 PF04101 Glycosyltransferase family 28 C-terminal domain EFI48_RS02105 PF02875 Mur ligase family, glutamate ligase domain EFI48_RS02105 PF08245 Mur ligase middle domain EFI48_RS02105 PF01225 Mur ligase family, catalytic domain EFI48_RS02110 PF03799 Cell division protein FtsQ EFI48_RS02110 PF08478 POTRA domain, FtsQ-type EFI48_RS02115 PF02491 SHS2 domain inserted in FTSA EFI48_RS02120 PF00091 Tubulin/FtsZ family, GTPase domain EFI48_RS02120 PF12327 FtsZ family, C-terminal domain EFI48_RS02125 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EFI48_RS02135 PF01043 SecA preprotein cross-linking domain EFI48_RS02135 PF07517 SecA DEAD-like domain EFI48_RS02135 PF07516 SecA Wing and Scaffold domain EFI48_RS02135 PF02810 SEC-C motif EFI48_RS02140 PF00293 NUDIX domain EFI48_RS02145 PF03884 DNA gyrase inhibitor YacG EFI48_RS02150 PF07072 Cell division protein EFI48_RS02155 PF01121 Dephospho-CoA kinase EFI48_RS02160 PF06750 Bacterial Peptidase A24 N-terminal domain EFI48_RS02160 PF01478 Type IV leader peptidase family EFI48_RS02165 PF00482 Type II secretion system (T2SS), protein F EFI48_RS02170 PF00437 Type II/IV secretion system protein EFI48_RS02170 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EFI48_RS02175 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS02185 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EFI48_RS02185 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EFI48_RS02195 PF01510 N-acetylmuramoyl-L-alanine amidase EFI48_RS02200 PF07729 FCD domain EFI48_RS02200 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS02205 PF17831 Pyruvate dehydrogenase E1 component middle domain EFI48_RS02205 PF00456 Transketolase, thiamine diphosphate binding domain EFI48_RS02210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EFI48_RS02210 PF02817 e3 binding domain EFI48_RS02210 PF00364 Biotin-requiring enzyme EFI48_RS02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS02215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EFI48_RS02220 PF00563 EAL domain EFI48_RS02220 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS02220 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS02225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS02225 PF00672 HAMP domain EFI48_RS02225 PF02743 Cache domain EFI48_RS02230 PF01734 Patatin-like phospholipase EFI48_RS02235 PF11791 Aconitate B N-terminal domain EFI48_RS02235 PF06434 Aconitate hydratase 2 N-terminus EFI48_RS02235 PF00330 Aconitase family (aconitate hydratase) EFI48_RS02240 PF12792 CSS motif domain associated with EAL EFI48_RS02240 PF00563 EAL domain EFI48_RS02250 PF02492 CobW/HypB/UreG, nucleotide-binding domain EFI48_RS02250 PF07683 Cobalamin synthesis protein cobW C-terminal domain EFI48_RS02255 PF00873 AcrB/AcrD/AcrF family EFI48_RS02270 PF07690 Major Facilitator Superfamily EFI48_RS02280 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EFI48_RS02285 PF02152 Dihydroneopterin aldolase EFI48_RS02290 PF02660 Glycerol-3-phosphate acyltransferase EFI48_RS02315 PF07670 Nucleoside recognition EFI48_RS02335 PF14698 Argininosuccinate lyase C-terminal EFI48_RS02335 PF00206 Lyase EFI48_RS02340 PF00764 Arginosuccinate synthase EFI48_RS02345 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EFI48_RS02345 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EFI48_RS02350 PF00696 Amino acid kinase family EFI48_RS02355 PF01118 Semialdehyde dehydrogenase, NAD binding domain EFI48_RS02355 PF02774 Semialdehyde dehydrogenase, dimerisation domain EFI48_RS02360 PF01546 Peptidase family M20/M25/M40 EFI48_RS02360 PF07687 Peptidase dimerisation domain EFI48_RS02365 PF00311 Phosphoenolpyruvate carboxylase EFI48_RS02370 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS02380 PF17151 Periplasmic sensor domain EFI48_RS02380 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS02390 PF06055 Exopolysaccharide synthesis, ExoD EFI48_RS02400 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS02405 PF00909 Ammonium Transporter Family EFI48_RS02410 PF05433 Glycine zipper 2TM domain EFI48_RS02415 PF00583 Acetyltransferase (GNAT) family EFI48_RS02420 PF11756 Nitrous oxide-stimulated promoter EFI48_RS02425 PF01321 Creatinase/Prolidase N-terminal domain EFI48_RS02425 PF00557 Metallopeptidase family M24 EFI48_RS02430 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS02435 PF01293 Phosphoenolpyruvate carboxykinase EFI48_RS02440 PF01430 Hsp33 protein EFI48_RS02445 PF01479 S4 domain EFI48_RS02455 PF00293 NUDIX domain EFI48_RS02460 PF01594 AI-2E family transporter EFI48_RS02465 PF13808 DDE_Tnp_1-associated EFI48_RS02465 PF01609 Transposase DDE domain EFI48_RS02490 PF02954 Bacterial regulatory protein, Fis family EFI48_RS02490 PF00989 PAS fold EFI48_RS02490 PF00158 Sigma-54 interaction domain EFI48_RS02495 PF00465 Iron-containing alcohol dehydrogenase EFI48_RS02500 PF00381 PTS HPr component phosphorylation site EFI48_RS02500 PF00391 PEP-utilising enzyme, mobile domain EFI48_RS02500 PF05524 PEP-utilising enzyme, N-terminal EFI48_RS02500 PF03610 PTS system fructose IIA component EFI48_RS02505 PF02734 DAK2 domain EFI48_RS02510 PF02733 Dak1 domain EFI48_RS02515 PF00860 Permease family EFI48_RS02520 PF00313 'Cold-shock' DNA-binding domain EFI48_RS02530 PF01545 Cation efflux family EFI48_RS02530 PF16916 Dimerisation domain of Zinc Transporter EFI48_RS02550 PF01381 Helix-turn-helix EFI48_RS02580 PF07690 Major Facilitator Superfamily EFI48_RS02595 PF14490 Helix-hairpin-helix containing domain EFI48_RS02595 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain EFI48_RS02595 PF13538 UvrD-like helicase C-terminal domain EFI48_RS02630 PF00436 Single-strand binding protein family EFI48_RS02635 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS02640 PF10627 Curli assembly protein CsgE EFI48_RS02650 PF03783 Curli production assembly/transport component CsgG EFI48_RS02670 PF17755 UvrA DNA-binding domain EFI48_RS02670 PF17760 UvrA interaction domain EFI48_RS02670 PF00005 ABC transporter EFI48_RS02675 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS02680 PF03922 OmpW family EFI48_RS02685 PF00672 HAMP domain EFI48_RS02685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS02700 PF02219 Methylenetetrahydrofolate reductase EFI48_RS02710 PF03594 Benzoate membrane transport protein EFI48_RS02715 PF07883 Cupin domain EFI48_RS02715 PF01381 Helix-turn-helix EFI48_RS02750 PF04363 Protein of unknown function (DUF496) EFI48_RS02770 PF02464 Competence-damaged protein EFI48_RS02770 PF00994 Probable molybdopterin binding domain EFI48_RS02780 PF04204 Homoserine O-succinyltransferase EFI48_RS02790 PF01037 Lrp/AsnC ligand binding domain EFI48_RS02795 PF00884 Sulfatase EFI48_RS02810 PF02903 Alpha amylase, N-terminal ig-like domain EFI48_RS02810 PF00128 Alpha amylase, catalytic domain EFI48_RS02810 PF16657 Maltogenic Amylase, C-terminal domain EFI48_RS02830 PF00106 short chain dehydrogenase EFI48_RS02835 PF03577 Peptidase family C69 EFI48_RS02845 PF00465 Iron-containing alcohol dehydrogenase EFI48_RS02850 PF02142 MGS-like domain EFI48_RS02855 PF00210 Ferritin-like domain EFI48_RS02870 PF17176 tRNA-binding domain EFI48_RS02870 PF05127 Helicase EFI48_RS02870 PF13718 GNAT acetyltransferase 2 EFI48_RS02870 PF08351 Domain of unknown function (DUF1726) EFI48_RS02875 PF00106 short chain dehydrogenase EFI48_RS02880 PF00072 Response regulator receiver domain EFI48_RS02880 PF01584 CheW-like domain EFI48_RS02890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EFI48_RS02890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EFI48_RS02895 PF02698 DUF218 domain EFI48_RS02900 PF01752 Collagenase EFI48_RS02900 PF08453 Peptidase family M9 N-terminal EFI48_RS02905 PF00501 AMP-binding enzyme EFI48_RS02910 PF13378 Enolase C-terminal domain-like EFI48_RS02915 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS02920 PF12697 Alpha/beta hydrolase family EFI48_RS02925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EFI48_RS02925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EFI48_RS02925 PF16582 Middle domain of thiamine pyrophosphate EFI48_RS02930 PF00425 chorismate binding enzyme EFI48_RS02935 PF01040 UbiA prenyltransferase family EFI48_RS02955 PF00271 Helicase conserved C-terminal domain EFI48_RS02955 PF00270 DEAD/DEAH box helicase EFI48_RS02955 PF03880 DbpA RNA binding domain EFI48_RS02960 PF07662 Na+ dependent nucleoside transporter C-terminus EFI48_RS02960 PF01773 Na+ dependent nucleoside transporter N-terminus EFI48_RS02960 PF07670 Nucleoside recognition EFI48_RS02965 PF04307 LexA-binding, inner membrane-associated putative hydrolase EFI48_RS02970 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EFI48_RS02975 PF01544 CorA-like Mg2+ transporter protein EFI48_RS02990 PF01556 DnaJ C terminal domain EFI48_RS02990 PF00684 DnaJ central domain EFI48_RS02990 PF00226 DnaJ domain EFI48_RS03000 PF05068 Mannitol repressor EFI48_RS03005 PF08125 Mannitol dehydrogenase C-terminal domain EFI48_RS03005 PF01232 Mannitol dehydrogenase Rossmann domain EFI48_RS03010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EFI48_RS03010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EFI48_RS03010 PF02378 Phosphotransferase system, EIIC EFI48_RS03015 PF03279 Bacterial lipid A biosynthesis acyltransferase EFI48_RS03020 PF00294 pfkB family carbohydrate kinase EFI48_RS03020 PF01467 Cytidylyltransferase-like EFI48_RS03025 PF02321 Outer membrane efflux protein EFI48_RS03030 PF00293 NUDIX domain EFI48_RS03035 PF06853 Protein of unknown function (DUF1249) EFI48_RS03040 PF00149 Calcineurin-like phosphoesterase EFI48_RS03045 PF05728 Uncharacterised protein family (UPF0227) EFI48_RS03050 PF00204 DNA gyrase B EFI48_RS03050 PF00986 DNA gyrase B subunit, carboxyl terminus EFI48_RS03050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS03050 PF01751 Toprim domain EFI48_RS03055 PF00521 DNA gyrase/topoisomerase IV, subunit A EFI48_RS03055 PF03989 DNA gyrase C-terminal domain, beta-propeller EFI48_RS03060 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EFI48_RS03065 PF00854 POT family EFI48_RS03085 PF00684 DnaJ central domain EFI48_RS03085 PF00226 DnaJ domain EFI48_RS03085 PF01556 DnaJ C terminal domain EFI48_RS03095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EFI48_RS03095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EFI48_RS03100 PF03466 LysR substrate binding domain EFI48_RS03100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS03105 PF00578 AhpC/TSA family EFI48_RS03125 PF01553 Acyltransferase EFI48_RS03130 PF04012 PspA/IM30 family EFI48_RS03145 PF01541 GIY-YIG catalytic domain EFI48_RS03155 PF00892 EamA-like transporter family EFI48_RS03160 PF03167 Uracil DNA glycosylase superfamily EFI48_RS03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS03170 PF03466 LysR substrate binding domain EFI48_RS03175 PF00950 ABC 3 transport family EFI48_RS03180 PF00005 ABC transporter EFI48_RS03185 PF01297 Zinc-uptake complex component A periplasmic EFI48_RS03205 PF01476 LysM domain EFI48_RS03205 PF08525 Opacity-associated protein A N-terminal motif EFI48_RS03205 PF01551 Peptidase family M23 EFI48_RS03210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EFI48_RS03215 PF04222 Protein of unknown function (DUF416) EFI48_RS03230 PF02028 BCCT, betaine/carnitine/choline family transporter EFI48_RS03235 PF01743 Poly A polymerase head domain EFI48_RS03235 PF12627 Probable RNA and SrmB- binding site of polymerase A EFI48_RS03235 PF01966 HD domain EFI48_RS03240 PF10576 Iron-sulfur binding domain of endonuclease III EFI48_RS03240 PF00730 HhH-GPD superfamily base excision DNA repair protein EFI48_RS03240 PF14815 NUDIX domain EFI48_RS03240 PF00633 Helix-hairpin-helix motif EFI48_RS03245 PF04362 Bacterial Fe(2+) trafficking EFI48_RS03250 PF01464 Transglycosylase SLT domain EFI48_RS03250 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain EFI48_RS03255 PF04076 Bacterial OB fold (BOF) protein EFI48_RS03260 PF00657 GDSL-like Lipase/Acylhydrolase EFI48_RS03265 PF00691 OmpA family EFI48_RS03265 PF01389 OmpA-like transmembrane domain EFI48_RS03270 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS03275 PF00773 RNB domain EFI48_RS03275 PF17876 Cold shock domain EFI48_RS03275 PF08461 Ribonuclease R winged-helix domain EFI48_RS03275 PF08206 Ribonuclease B OB domain EFI48_RS03275 PF00575 S1 RNA binding domain EFI48_RS03290 PF00588 SpoU rRNA Methylase family EFI48_RS03290 PF08032 RNA 2'-O ribose methyltransferase substrate binding EFI48_RS03300 PF13673 Acetyltransferase (GNAT) domain EFI48_RS03305 PF00270 DEAD/DEAH box helicase EFI48_RS03305 PF00271 Helicase conserved C-terminal domain EFI48_RS03310 PF05175 Methyltransferase small domain EFI48_RS03315 PF05525 Branched-chain amino acid transport protein EFI48_RS03320 PF05525 Branched-chain amino acid transport protein EFI48_RS03335 PF01475 Ferric uptake regulator family EFI48_RS03340 PF01207 Dihydrouridine synthase (Dus) EFI48_RS03345 PF08447 PAS fold EFI48_RS03345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS03355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS03365 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS03370 PF10952 Protein of unknown function (DUF2753) EFI48_RS03375 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS03390 PF00106 short chain dehydrogenase EFI48_RS03395 PF04073 Aminoacyl-tRNA editing domain EFI48_RS03395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EFI48_RS03395 PF03129 Anticodon binding domain EFI48_RS03400 PF05958 tRNA (Uracil-5-)-methyltransferase EFI48_RS03400 PF01938 TRAM domain EFI48_RS03410 PF02470 MlaD protein EFI48_RS03415 PF04403 Paraquat-inducible protein A EFI48_RS03420 PF17209 Hfq protein EFI48_RS03425 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS03435 PF00563 EAL domain EFI48_RS03435 PF00360 Phytochrome region EFI48_RS03435 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS03435 PF01590 GAF domain EFI48_RS03440 PF00773 RNB domain EFI48_RS03440 PF17876 Cold shock domain EFI48_RS03440 PF08206 Ribonuclease B OB domain EFI48_RS03445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS03445 PF03466 LysR substrate binding domain EFI48_RS03450 PF00765 Autoinducer synthase EFI48_RS03455 PF03472 Autoinducer binding domain EFI48_RS03455 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS03460 PF01810 LysE type translocator EFI48_RS03465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS03465 PF00672 HAMP domain EFI48_RS03470 PF07499 RuvA, C-terminal domain EFI48_RS03470 PF01330 RuvA N terminal domain EFI48_RS03475 PF17864 RuvB AAA lid domain EFI48_RS03475 PF05491 RuvB C-terminal winged helix domain EFI48_RS03475 PF05496 Holliday junction DNA helicase RuvB P-loop domain EFI48_RS03480 PF01654 Cytochrome bd terminal oxidase subunit I EFI48_RS03485 PF02322 Cytochrome bd terminal oxidase subunit II EFI48_RS03490 PF08173 Membrane bound YbgT-like protein EFI48_RS03495 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) EFI48_RS03500 PF03061 Thioesterase superfamily EFI48_RS03505 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS03510 PF02472 Biopolymer transport protein ExbD/TolR EFI48_RS03520 PF07676 WD40-like Beta Propeller Repeat EFI48_RS03520 PF04052 TolB amino-terminal domain EFI48_RS03525 PF00691 OmpA family EFI48_RS03530 PF16331 TolA binding protein trimerisation EFI48_RS03530 PF13174 Tetratricopeptide repeat EFI48_RS03600 PF00209 Sodium:neurotransmitter symporter family EFI48_RS03610 PF00209 Sodium:neurotransmitter symporter family EFI48_RS03630 PF07690 Major Facilitator Superfamily EFI48_RS03640 PF01037 Lrp/AsnC ligand binding domain EFI48_RS03655 PF00293 NUDIX domain EFI48_RS03655 PF13344 Haloacid dehalogenase-like hydrolase EFI48_RS03665 PF01641 SelR domain EFI48_RS03670 PF01609 Transposase DDE domain EFI48_RS03670 PF13808 DDE_Tnp_1-associated EFI48_RS03675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EFI48_RS03675 PF00128 Alpha amylase, catalytic domain EFI48_RS03680 PF02806 Alpha amylase, C-terminal all-beta domain EFI48_RS03680 PF00128 Alpha amylase, catalytic domain EFI48_RS03680 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EFI48_RS03685 PF02446 4-alpha-glucanotransferase EFI48_RS03690 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EFI48_RS03690 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EFI48_RS03695 PF01263 Aldose 1-epimerase EFI48_RS03700 PF02445 Quinolinate synthetase A protein EFI48_RS03705 PF00672 HAMP domain EFI48_RS03705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS03710 PF01957 NfeD-like C-terminal, partner-binding EFI48_RS03715 PF01145 SPFH domain / Band 7 family EFI48_RS03715 PF16200 C-terminal region of band_7 EFI48_RS03720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EFI48_RS03720 PF10414 Sirohaem synthase dimerisation region EFI48_RS03720 PF14824 Sirohaem biosynthesis protein central EFI48_RS03725 PF01507 Phosphoadenosine phosphosulfate reductase family EFI48_RS03730 PF00009 Elongation factor Tu GTP binding domain EFI48_RS03735 PF03600 Citrate transporter EFI48_RS03735 PF02080 TrkA-C domain EFI48_RS03755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS03755 PF08447 PAS fold EFI48_RS03775 PF00005 ABC transporter EFI48_RS03790 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) EFI48_RS03805 PF00719 Inorganic pyrophosphatase EFI48_RS03810 PF11849 Domain of unknown function (DUF3369) EFI48_RS03820 PF00893 Small Multidrug Resistance protein EFI48_RS03825 PF00893 Small Multidrug Resistance protein EFI48_RS03830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EFI48_RS03835 PF14814 Bifunctional transglycosylase second domain EFI48_RS03835 PF00905 Penicillin binding protein transpeptidase domain EFI48_RS03835 PF00912 Transglycosylase EFI48_RS03840 PF04408 Helicase associated domain (HA2) EFI48_RS03840 PF00271 Helicase conserved C-terminal domain EFI48_RS03840 PF00270 DEAD/DEAH box helicase EFI48_RS03840 PF08482 ATP-dependent helicase C-terminal EFI48_RS03850 PF03749 Sugar fermentation stimulation protein RE domain EFI48_RS03850 PF17746 SfsA N-terminal OB domain EFI48_RS03855 PF01258 Prokaryotic dksA/traR C4-type zinc finger EFI48_RS03860 PF00749 tRNA synthetases class I (E and Q), catalytic domain EFI48_RS03865 PF01743 Poly A polymerase head domain EFI48_RS03865 PF12626 Polymerase A arginine-rich C-terminus EFI48_RS03865 PF12627 Probable RNA and SrmB- binding site of polymerase A EFI48_RS03870 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EFI48_RS03875 PF02548 Ketopantoate hydroxymethyltransferase EFI48_RS03880 PF02569 Pantoate-beta-alanine ligase EFI48_RS03890 PF00375 Sodium:dicarboxylate symporter family EFI48_RS03910 PF01869 BadF/BadG/BcrA/BcrD ATPase family EFI48_RS03915 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component EFI48_RS03920 PF01061 ABC-2 type transporter EFI48_RS03925 PF00005 ABC transporter EFI48_RS03930 PF00156 Phosphoribosyl transferase domain EFI48_RS03935 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS03940 PF02441 Flavoprotein EFI48_RS03945 PF02875 Mur ligase family, glutamate ligase domain EFI48_RS03945 PF01225 Mur ligase family, catalytic domain EFI48_RS03945 PF08245 Mur ligase middle domain EFI48_RS03950 PF01569 PAP2 superfamily EFI48_RS03955 PF01370 NAD dependent epimerase/dehydratase family EFI48_RS03960 PF00970 Oxidoreductase FAD-binding domain EFI48_RS03960 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS03960 PF00175 Oxidoreductase NAD-binding domain EFI48_RS03965 PF03063 Prismane/CO dehydrogenase family EFI48_RS03970 PF00210 Ferritin-like domain EFI48_RS03975 PF01510 N-acetylmuramoyl-L-alanine amidase EFI48_RS03980 PF07308 Protein of unknown function (DUF1456) EFI48_RS03985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EFI48_RS03985 PF01627 Hpt domain EFI48_RS03985 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS03985 PF00672 HAMP domain EFI48_RS03985 PF00072 Response regulator receiver domain EFI48_RS03990 PF01938 TRAM domain EFI48_RS03990 PF05958 tRNA (Uracil-5-)-methyltransferase EFI48_RS03995 PF02824 TGS domain EFI48_RS03995 PF04607 Region found in RelA / SpoT proteins EFI48_RS03995 PF13291 ACT domain EFI48_RS04000 PF03819 MazG nucleotide pyrophosphohydrolase domain EFI48_RS04005 PF00117 Glutamine amidotransferase class-I EFI48_RS04005 PF06418 CTP synthase N-terminus EFI48_RS04010 PF03952 Enolase, N-terminal domain EFI48_RS04010 PF00113 Enolase, C-terminal TIM barrel domain EFI48_RS04055 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EFI48_RS04065 PF00005 ABC transporter EFI48_RS04065 PF12848 ABC transporter EFI48_RS04070 PF01743 Poly A polymerase head domain EFI48_RS04070 PF02272 DHHA1 domain EFI48_RS04070 PF01368 DHH family EFI48_RS04070 PF00571 CBS domain EFI48_RS04085 PF00155 Aminotransferase class I and II EFI48_RS04085 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS04095 PF01810 LysE type translocator EFI48_RS04100 PF01177 Asp/Glu/Hydantoin racemase EFI48_RS04110 PF04074 YhcH/YjgK/YiaL EFI48_RS04115 PF00871 Acetokinase family EFI48_RS04120 PF00924 Mechanosensitive ion channel EFI48_RS04125 PF17969 L,D-transpeptidase C-terminal domain EFI48_RS04125 PF03734 L,D-transpeptidase catalytic domain EFI48_RS04135 PF00474 Sodium:solute symporter family EFI48_RS04140 PF04977 Septum formation initiator EFI48_RS04145 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EFI48_RS04150 PF02542 YgbB family EFI48_RS04155 PF01142 tRNA pseudouridine synthase D (TruD) EFI48_RS04160 PF01975 Survival protein SurE EFI48_RS04170 PF09335 SNARE associated Golgi protein EFI48_RS04175 PF01476 LysM domain EFI48_RS04175 PF01551 Peptidase family M23 EFI48_RS04180 PF00140 Sigma-70 factor, region 1.2 EFI48_RS04180 PF04542 Sigma-70 region 2 EFI48_RS04180 PF04539 Sigma-70 region 3 EFI48_RS04180 PF04545 Sigma-70, region 4 EFI48_RS04185 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EFI48_RS04195 PF04480 Protein of unknown function (DUF559) EFI48_RS04200 PF03466 LysR substrate binding domain EFI48_RS04200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS04205 PF04371 Porphyromonas-type peptidyl-arginine deiminase EFI48_RS04210 PF01425 Amidase EFI48_RS04220 PF00753 Metallo-beta-lactamase superfamily EFI48_RS04230 PF00270 DEAD/DEAH box helicase EFI48_RS04230 PF00271 Helicase conserved C-terminal domain EFI48_RS04235 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS04245 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase EFI48_RS04255 PF00445 Ribonuclease T2 family EFI48_RS04260 PF03060 Nitronate monooxygenase EFI48_RS04290 PF00293 NUDIX domain EFI48_RS04290 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain EFI48_RS04290 PF09297 NADH pyrophosphatase zinc ribbon domain EFI48_RS04305 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS04305 PF00072 Response regulator receiver domain EFI48_RS04325 PF03710 Glutamate-ammonia ligase adenylyltransferase EFI48_RS04325 PF08335 GlnD PII-uridylyltransferase EFI48_RS04335 PF00672 HAMP domain EFI48_RS04335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS04340 PF00027 Cyclic nucleotide-binding domain EFI48_RS04340 PF00520 Ion transport protein EFI48_RS04345 PF08239 Bacterial SH3 domain EFI48_RS04350 PF00171 Aldehyde dehydrogenase family EFI48_RS04350 PF01619 Proline dehydrogenase EFI48_RS04350 PF14850 DNA-binding domain of Proline dehydrogenase EFI48_RS04350 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EFI48_RS04355 PF09297 NADH pyrophosphatase zinc ribbon domain EFI48_RS04355 PF00293 NUDIX domain EFI48_RS04360 PF01208 Uroporphyrinogen decarboxylase (URO-D) EFI48_RS04365 PF00480 ROK family EFI48_RS04370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EFI48_RS04370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EFI48_RS04375 PF00162 Phosphoglycerate kinase EFI48_RS04380 PF01116 Fructose-bisphosphate aldolase class-II EFI48_RS04385 PF01266 FAD dependent oxidoreductase EFI48_RS04400 PF02683 Cytochrome C biogenesis protein transmembrane region EFI48_RS04400 PF11412 Disulphide bond corrector protein DsbC EFI48_RS04405 PF03091 CutA1 divalent ion tolerance protein EFI48_RS04420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS04420 PF03466 LysR substrate binding domain EFI48_RS04425 PF01571 Aminomethyltransferase folate-binding domain EFI48_RS04430 PF03937 Flavinator of succinate dehydrogenase EFI48_RS04440 PF00890 FAD binding domain EFI48_RS04440 PF02910 Fumarate reductase flavoprotein C-term EFI48_RS04445 PF08281 Sigma-70, region 4 EFI48_RS04445 PF04542 Sigma-70 region 2 EFI48_RS04450 PF03872 Anti sigma-E protein RseA, N-terminal domain EFI48_RS04450 PF03873 Anti sigma-E protein RseA, C-terminal domain EFI48_RS04455 PF17188 MucB/RseB C-terminal domain EFI48_RS04455 PF03888 MucB/RseB N-terminal domain EFI48_RS04465 PF06421 GTP-binding protein LepA C-terminus EFI48_RS04465 PF03144 Elongation factor Tu domain 2 EFI48_RS04465 PF00009 Elongation factor Tu GTP binding domain EFI48_RS04465 PF00679 Elongation factor G C-terminus EFI48_RS04470 PF10502 Signal peptidase, peptidase S26 EFI48_RS04475 PF00035 Double-stranded RNA binding motif EFI48_RS04475 PF14622 Ribonuclease-III-like EFI48_RS04480 PF01926 50S ribosome-binding GTPase EFI48_RS04480 PF07650 KH domain EFI48_RS04485 PF02565 Recombination protein O C terminal EFI48_RS04485 PF11967 Recombination protein O N terminal EFI48_RS04490 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EFI48_RS04495 PF00459 Inositol monophosphatase family EFI48_RS04500 PF03795 YCII-related domain EFI48_RS04505 PF04279 Intracellular septation protein A EFI48_RS04510 PF00282 Pyridoxal-dependent decarboxylase conserved domain EFI48_RS04515 PF03006 Haemolysin-III related EFI48_RS04520 PF02080 TrkA-C domain EFI48_RS04520 PF06826 Predicted Permease Membrane Region EFI48_RS04650 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS04650 PF00563 EAL domain EFI48_RS04650 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS04655 PF06877 Regulator of ribonuclease activity B EFI48_RS04670 PF00561 alpha/beta hydrolase fold EFI48_RS04675 PF00194 Eukaryotic-type carbonic anhydrase EFI48_RS04680 PF04227 Indigoidine synthase A like protein EFI48_RS04685 PF00294 pfkB family carbohydrate kinase EFI48_RS04700 PF00582 Universal stress protein family EFI48_RS04710 PF00267 Gram-negative porin EFI48_RS04715 PF08241 Methyltransferase domain EFI48_RS04720 PF00027 Cyclic nucleotide-binding domain EFI48_RS04720 PF13545 Crp-like helix-turn-helix domain EFI48_RS04725 PF02566 OsmC-like protein EFI48_RS04740 PF00485 Phosphoribulokinase / Uridine kinase family EFI48_RS04745 PF06794 Uncharacterised protein family (UPF0270) EFI48_RS04750 PF01590 GAF domain EFI48_RS04750 PF00360 Phytochrome region EFI48_RS04750 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS04750 PF00563 EAL domain EFI48_RS04755 PF00561 alpha/beta hydrolase fold EFI48_RS04760 PF00072 Response regulator receiver domain EFI48_RS04760 PF01584 CheW-like domain EFI48_RS04770 PF09526 Probable metal-binding protein (DUF2387) EFI48_RS04775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EFI48_RS04790 PF03796 DnaB-like helicase C terminal domain EFI48_RS04790 PF00772 DnaB-like helicase N terminal domain EFI48_RS04795 PF00842 Alanine racemase, C-terminal domain EFI48_RS04795 PF01168 Alanine racemase, N-terminal domain EFI48_RS04800 PF01894 Uncharacterised protein family UPF0047 EFI48_RS04805 PF03575 Peptidase family S51 EFI48_RS04815 PF00005 ABC transporter EFI48_RS04820 PF01032 FecCD transport family EFI48_RS04830 PF06228 Haem utilisation ChuX/HutX EFI48_RS04835 PF01243 Pyridoxamine 5'-phosphate oxidase EFI48_RS04855 PF00593 TonB dependent receptor EFI48_RS04855 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS04865 PF12832 MFS_1 like family EFI48_RS04875 PF13443 Cro/C1-type HTH DNA-binding domain EFI48_RS04885 PF01627 Hpt domain EFI48_RS04885 PF00672 HAMP domain EFI48_RS04885 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EFI48_RS04885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS04885 PF00072 Response regulator receiver domain EFI48_RS04885 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS04890 PF00704 Glycosyl hydrolases family 18 EFI48_RS04890 PF08329 Chitinase A, N-terminal domain EFI48_RS04895 PF08448 PAS fold EFI48_RS04895 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS04900 PF00704 Glycosyl hydrolases family 18 EFI48_RS04900 PF08329 Chitinase A, N-terminal domain EFI48_RS04905 PF12561 ToxR activated gene A lipoprotein domain EFI48_RS04905 PF17945 Beta/Gamma crystallin EFI48_RS04910 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EFI48_RS04910 PF18416 N-acetylglucosamine binding protein domain 2 EFI48_RS04950 PF06483 Chitinase C EFI48_RS04950 PF00704 Glycosyl hydrolases family 18 EFI48_RS04955 PF00072 Response regulator receiver domain EFI48_RS04955 PF01584 CheW-like domain EFI48_RS04960 PF13472 GDSL-like Lipase/Acylhydrolase family EFI48_RS04965 PF00005 ABC transporter EFI48_RS04975 PF08338 Domain of unknown function (DUF1731) EFI48_RS04975 PF01370 NAD dependent epimerase/dehydratase family EFI48_RS04980 PF12792 CSS motif domain associated with EAL EFI48_RS04980 PF00563 EAL domain EFI48_RS04985 PF00155 Aminotransferase class I and II EFI48_RS04990 PF02390 Putative methyltransferase EFI48_RS04995 PF04320 Protein with unknown function (DUF469) EFI48_RS05000 PF04960 Glutaminase EFI48_RS05005 PF00581 Rhodanese-like domain EFI48_RS05010 PF06004 Bacterial protein of unknown function (DUF903) EFI48_RS05020 PF00994 Probable molybdopterin binding domain EFI48_RS05030 PF06738 Putative threonine/serine exporter EFI48_RS05035 PF12821 Threonine/Serine exporter, ThrE EFI48_RS05040 PF00186 Dihydrofolate reductase EFI48_RS05045 PF01507 Phosphoadenosine phosphosulfate reductase family EFI48_RS05050 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EFI48_RS05050 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EFI48_RS05055 PF00175 Oxidoreductase NAD-binding domain EFI48_RS05055 PF00667 FAD binding domain EFI48_RS05055 PF00258 Flavodoxin EFI48_RS05060 PF02567 Phenazine biosynthesis-like protein EFI48_RS05065 PF01336 OB-fold nucleic acid binding domain EFI48_RS05065 PF00152 tRNA synthetases class II (D, K and N) EFI48_RS05075 PF00672 HAMP domain EFI48_RS05075 PF02743 Cache domain EFI48_RS05075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS05080 PF03616 Sodium/glutamate symporter EFI48_RS05085 PF17763 Glutaminase/Asparaginase C-terminal domain EFI48_RS05085 PF00710 Asparaginase, N-terminal EFI48_RS05090 PF07023 Protein of unknown function (DUF1315) EFI48_RS05095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EFI48_RS05095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EFI48_RS05110 PF04055 Radical SAM superfamily EFI48_RS05110 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EFI48_RS05115 PF03099 Biotin/lipoate A/B protein ligase family EFI48_RS05120 PF04359 Protein of unknown function (DUF493) EFI48_RS05125 PF07943 Penicillin-binding protein 5, C-terminal domain EFI48_RS05125 PF00768 D-alanyl-D-alanine carboxypeptidase EFI48_RS05130 PF03330 Lytic transglycolase EFI48_RS05130 PF05036 Sporulation related domain EFI48_RS05135 PF13406 Transglycosylase SLT domain EFI48_RS05140 PF01098 Cell cycle protein EFI48_RS05145 PF03717 Penicillin-binding Protein dimerisation domain EFI48_RS05145 PF00905 Penicillin binding protein transpeptidase domain EFI48_RS05150 PF02590 Predicted SPOUT methyltransferase EFI48_RS05160 PF01467 Cytidylyltransferase-like EFI48_RS05175 PF00133 tRNA synthetases class I (I, L, M and V) EFI48_RS05175 PF13603 Leucyl-tRNA synthetase, Domain 2 EFI48_RS05175 PF08264 Anticodon-binding domain of tRNA EFI48_RS05180 PF07295 Zinc-ribbon containing domain EFI48_RS05185 PF01523 Putative modulator of DNA gyrase EFI48_RS05190 PF01523 Putative modulator of DNA gyrase EFI48_RS05195 PF00258 Flavodoxin EFI48_RS05200 PF00589 Phage integrase family EFI48_RS05200 PF02899 Phage integrase, N-terminal SAM-like domain EFI48_RS05205 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS05205 PF00072 Response regulator receiver domain EFI48_RS05210 PF01741 Large-conductance mechanosensitive channel, MscL EFI48_RS05220 PF17768 RecJ OB domain EFI48_RS05220 PF02272 DHHA1 domain EFI48_RS05220 PF01368 DHH family EFI48_RS05225 PF13411 MerR HTH family regulatory protein EFI48_RS05230 PF00795 Carbon-nitrogen hydrolase EFI48_RS05235 PF03471 Transporter associated domain EFI48_RS05235 PF00571 CBS domain EFI48_RS05240 PF02130 Uncharacterized protein family UPF0054 EFI48_RS05245 PF02562 PhoH-like protein EFI48_RS05250 PF01938 TRAM domain EFI48_RS05250 PF04055 Radical SAM superfamily EFI48_RS05250 PF00919 Uncharacterized protein family UPF0004 EFI48_RS05255 PF01494 FAD binding domain EFI48_RS05260 PF00857 Isochorismatase family EFI48_RS05265 PF00313 'Cold-shock' DNA-binding domain EFI48_RS05270 PF05230 MASE2 domain EFI48_RS05270 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS05275 PF03466 LysR substrate binding domain EFI48_RS05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS05285 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS05295 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS05305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EFI48_RS05305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EFI48_RS05315 PF09285 Elongation factor P, C-terminal EFI48_RS05315 PF08207 Elongation factor P (EF-P) KOW-like domain EFI48_RS05315 PF01132 Elongation factor P (EF-P) OB domain EFI48_RS05325 PF00478 IMP dehydrogenase / GMP reductase domain EFI48_RS05335 PF08521 Two-component sensor kinase N-terminal EFI48_RS05335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS05335 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS05340 PF00072 Response regulator receiver domain EFI48_RS05340 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS05350 PF00106 short chain dehydrogenase EFI48_RS05360 PF00501 AMP-binding enzyme EFI48_RS05375 PF01266 FAD dependent oxidoreductase EFI48_RS05385 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS05385 PF17932 Tetracyclin repressor-like, C-terminal domain EFI48_RS05390 PF06224 Winged helix DNA-binding domain EFI48_RS05400 PF01546 Peptidase family M20/M25/M40 EFI48_RS05400 PF07687 Peptidase dimerisation domain EFI48_RS05405 PF07670 Nucleoside recognition EFI48_RS05410 PF07670 Nucleoside recognition EFI48_RS05415 PF02313 Fumarate reductase subunit D EFI48_RS05420 PF02300 Fumarate reductase subunit C EFI48_RS05425 PF13085 2Fe-2S iron-sulfur cluster binding domain EFI48_RS05425 PF13183 4Fe-4S dicluster domain EFI48_RS05430 PF00890 FAD binding domain EFI48_RS05430 PF02910 Fumarate reductase flavoprotein C-term EFI48_RS05435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS05435 PF02743 Cache domain EFI48_RS05435 PF00672 HAMP domain EFI48_RS05440 PF03009 Glycerophosphoryl diester phosphodiesterase family EFI48_RS05445 PF12794 Mechanosensitive ion channel inner membrane domain 1 EFI48_RS05445 PF12795 Mechanosensitive ion channel porin domain EFI48_RS05445 PF00924 Mechanosensitive ion channel EFI48_RS05455 PF01476 LysM domain EFI48_RS05455 PF08525 Opacity-associated protein A N-terminal motif EFI48_RS05455 PF01551 Peptidase family M23 EFI48_RS05465 PF03466 LysR substrate binding domain EFI48_RS05465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS05480 PF00672 HAMP domain EFI48_RS05480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS05485 PF03466 LysR substrate binding domain EFI48_RS05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS05490 PF00912 Transglycosylase EFI48_RS05490 PF00905 Penicillin binding protein transpeptidase domain EFI48_RS05490 PF17092 Penicillin-binding protein OB-like domain EFI48_RS05495 PF11104 Type IV pilus assembly protein PilM; EFI48_RS05515 PF11741 AMIN domain EFI48_RS05515 PF00263 Bacterial type II and III secretion system protein EFI48_RS05515 PF03958 Bacterial type II/III secretion system short domain EFI48_RS05515 PF07660 Secretin and TonB N terminus short domain EFI48_RS05520 PF01202 Shikimate kinase EFI48_RS05525 PF01761 3-dehydroquinate synthase EFI48_RS05535 PF02086 D12 class N6 adenine-specific DNA methyltransferase EFI48_RS05540 PF00834 Ribulose-phosphate 3 epimerase family EFI48_RS05545 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS05550 PF00579 tRNA synthetases class I (W and Y) EFI48_RS05560 PF00117 Glutamine amidotransferase class-I EFI48_RS05565 PF00202 Aminotransferase class-III EFI48_RS05570 PF04958 Arginine N-succinyltransferase beta subunit EFI48_RS05575 PF00171 Aldehyde dehydrogenase family EFI48_RS05590 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS05595 PF07690 Major Facilitator Superfamily EFI48_RS05600 PF10371 Domain of unknown function EFI48_RS05600 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EFI48_RS05600 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EFI48_RS05600 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EFI48_RS05600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EFI48_RS05605 PF00128 Alpha amylase, catalytic domain EFI48_RS05605 PF11941 Domain of unknown function (DUF3459) EFI48_RS05615 PF07859 alpha/beta hydrolase fold EFI48_RS05620 PF04266 ASCH domain EFI48_RS05630 PF01048 Phosphorylase superfamily EFI48_RS05635 PF04973 Nicotinamide mononucleotide transporter EFI48_RS05640 PF03600 Citrate transporter EFI48_RS05640 PF02080 TrkA-C domain EFI48_RS05715 PF00288 GHMP kinases N terminal domain EFI48_RS05715 PF08544 GHMP kinases C terminal EFI48_RS05715 PF10509 Galactokinase galactose-binding signature EFI48_RS05720 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain EFI48_RS05720 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain EFI48_RS05725 PF16363 GDP-mannose 4,6 dehydratase EFI48_RS05730 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS05735 PF02264 LamB porin EFI48_RS05740 PF07745 Glycosyl hydrolase family 53 EFI48_RS05750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS05750 PF02743 Cache domain EFI48_RS05750 PF00672 HAMP domain EFI48_RS05755 PF00005 ABC transporter EFI48_RS05755 PF17912 MalK OB fold domain EFI48_RS05760 PF13416 Bacterial extracellular solute-binding protein EFI48_RS05765 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS05770 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS05775 PF07745 Glycosyl hydrolase family 53 EFI48_RS05780 PF02449 Beta-galactosidase EFI48_RS05780 PF08533 Beta-galactosidase C-terminal domain EFI48_RS05780 PF08532 Beta-galactosidase trimerisation domain EFI48_RS05785 PF02378 Phosphotransferase system, EIIC EFI48_RS05785 PF00367 phosphotransferase system, EIIB EFI48_RS05790 PF07745 Glycosyl hydrolase family 53 EFI48_RS05795 PF00224 Pyruvate kinase, barrel domain EFI48_RS05795 PF02887 Pyruvate kinase, alpha/beta domain EFI48_RS05810 PF04002 RadC-like JAB domain EFI48_RS05845 PF02796 Helix-turn-helix domain of resolvase EFI48_RS05845 PF00239 Resolvase, N terminal domain EFI48_RS05855 PF09588 YqaJ-like viral recombinase domain EFI48_RS05865 PF06071 Protein of unknown function (DUF933) EFI48_RS05865 PF01926 50S ribosome-binding GTPase EFI48_RS05870 PF01195 Peptidyl-tRNA hydrolase EFI48_RS05875 PF02872 5'-nucleotidase, C-terminal domain EFI48_RS05875 PF00149 Calcineurin-like phosphoesterase EFI48_RS05880 PF14572 Phosphoribosyl synthetase-associated domain EFI48_RS05880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EFI48_RS05890 PF08544 GHMP kinases C terminal EFI48_RS05890 PF00288 GHMP kinases N terminal domain EFI48_RS05895 PF03550 Outer membrane lipoprotein LolB EFI48_RS05900 PF01488 Shikimate / quinate 5-dehydrogenase EFI48_RS05900 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EFI48_RS05900 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EFI48_RS05905 PF00472 RF-1 domain EFI48_RS05905 PF03462 PCRF domain EFI48_RS05910 PF13847 Methyltransferase domain EFI48_RS05910 PF17827 PrmC N-terminal domain EFI48_RS05920 PF13369 Transglutaminase-like superfamily EFI48_RS05925 PF00793 DAHP synthetase I family EFI48_RS05930 PF00375 Sodium:dicarboxylate symporter family EFI48_RS05935 PF01228 Glycine radical EFI48_RS05945 PF03167 Uracil DNA glycosylase superfamily EFI48_RS05955 PF01204 Trehalase EFI48_RS05965 PF01161 Phosphatidylethanolamine-binding protein EFI48_RS05970 PF00709 Adenylosuccinate synthetase EFI48_RS05985 PF00155 Aminotransferase class I and II EFI48_RS05990 PF07690 Major Facilitator Superfamily EFI48_RS05995 PF03466 LysR substrate binding domain EFI48_RS05995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS06000 PF00106 short chain dehydrogenase EFI48_RS06005 PF01343 Peptidase family S49 EFI48_RS06005 PF08496 Peptidase family S49 N-terminal EFI48_RS06010 PF07690 Major Facilitator Superfamily EFI48_RS06015 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS06020 PF02635 DsrE/DsrF-like family EFI48_RS06030 PF12838 4Fe-4S dicluster domain EFI48_RS06035 PF01136 Peptidase family U32 EFI48_RS06035 PF16325 Peptidase family U32 C-terminal domain EFI48_RS06040 PF01590 GAF domain EFI48_RS06040 PF00563 EAL domain EFI48_RS06040 PF00989 PAS fold EFI48_RS06040 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS06060 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS06060 PF00072 Response regulator receiver domain EFI48_RS06065 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EFI48_RS06065 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS06065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS06065 PF00672 HAMP domain EFI48_RS06065 PF00072 Response regulator receiver domain EFI48_RS06065 PF01627 Hpt domain EFI48_RS06090 PF04996 Succinylarginine dihydrolase EFI48_RS06095 PF01396 Topoisomerase DNA binding C4 zinc finger EFI48_RS06095 PF01751 Toprim domain EFI48_RS06095 PF01131 DNA topoisomerase EFI48_RS06095 PF08272 Topoisomerase I zinc-ribbon-like EFI48_RS06105 PF08447 PAS fold EFI48_RS06105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS06110 PF00728 Glycosyl hydrolase family 20, catalytic domain EFI48_RS06110 PF02838 Glycosyl hydrolase family 20, domain 2 EFI48_RS06115 PF01869 BadF/BadG/BcrA/BcrD ATPase family EFI48_RS06125 PF00005 ABC transporter EFI48_RS06125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS06130 PF00005 ABC transporter EFI48_RS06130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS06135 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS06135 PF12911 N-terminal TM domain of oligopeptide transport permease C EFI48_RS06140 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS06145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS06150 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS06150 PF00072 Response regulator receiver domain EFI48_RS06150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS06150 PF09308 LuxQ, periplasmic EFI48_RS06170 PF10725 Protein of unknown function (DUF2517) EFI48_RS06180 PF05114 Protein of unknown function (DUF692) EFI48_RS06200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS06200 PF13426 PAS domain EFI48_RS06200 PF08447 PAS fold EFI48_RS06215 PF04632 Fusaric acid resistance protein family EFI48_RS06220 PF00994 Probable molybdopterin binding domain EFI48_RS06220 PF03454 MoeA C-terminal region (domain IV) EFI48_RS06220 PF03453 MoeA N-terminal region (domain I and II) EFI48_RS06225 PF12804 MobA-like NTP transferase domain EFI48_RS06230 PF00005 ABC transporter EFI48_RS06235 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS06240 PF12849 PBP superfamily domain EFI48_RS06245 PF02954 Bacterial regulatory protein, Fis family EFI48_RS06245 PF00072 Response regulator receiver domain EFI48_RS06245 PF00158 Sigma-54 interaction domain EFI48_RS06250 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS06250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS06250 PF00989 PAS fold EFI48_RS06260 PF02634 FdhD/NarQ family EFI48_RS06295 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EFI48_RS06295 PF01568 Molydopterin dinucleotide binding domain EFI48_RS06295 PF01568 Molydopterin dinucleotide binding domain EFI48_RS06295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EFI48_RS06295 PF00384 Molybdopterin oxidoreductase EFI48_RS06295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EFI48_RS06295 PF00384 Molybdopterin oxidoreductase EFI48_RS06295 PF12838 4Fe-4S dicluster domain EFI48_RS06295 PF12838 4Fe-4S dicluster domain EFI48_RS06295 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EFI48_RS06300 PF13247 4Fe-4S dicluster domain EFI48_RS06320 PF00390 Malic enzyme, N-terminal domain EFI48_RS06320 PF03949 Malic enzyme, NAD binding domain EFI48_RS06325 PF05433 Glycine zipper 2TM domain EFI48_RS06325 PF16998 17 kDa outer membrane surface antigen EFI48_RS06335 PF00860 Permease family EFI48_RS06340 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS06345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS06345 PF00672 HAMP domain EFI48_RS06370 PF02685 Glucokinase EFI48_RS06375 PF01418 Helix-turn-helix domain, rpiR family EFI48_RS06375 PF01380 SIS domain EFI48_RS06380 PF02887 Pyruvate kinase, alpha/beta domain EFI48_RS06380 PF00224 Pyruvate kinase, barrel domain EFI48_RS06390 PF07969 Amidohydrolase family EFI48_RS06400 PF02049 Flagellar hook-basal body complex protein FliE EFI48_RS06405 PF08345 Flagellar M-ring protein C-terminal EFI48_RS06405 PF01514 Secretory protein of YscJ/FliF family EFI48_RS06410 PF01706 FliG C-terminal domain EFI48_RS06410 PF14841 FliG middle domain EFI48_RS06410 PF14842 FliG N-terminal domain EFI48_RS06420 PF18269 T3SS EscN ATPase C-terminal domain EFI48_RS06420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EFI48_RS06440 PF02154 Flagellar motor switch protein FliM EFI48_RS06440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EFI48_RS06445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EFI48_RS06450 PF04347 Flagellar biosynthesis protein, FliO EFI48_RS06455 PF00813 FliP family EFI48_RS06460 PF01313 Bacterial export proteins, family 3 EFI48_RS06465 PF01311 Bacterial export proteins, family 1 EFI48_RS06470 PF01312 FlhB HrpN YscU SpaS Family EFI48_RS06475 PF00771 FHIPEP family EFI48_RS06480 PF00448 SRP54-type protein, GTPase domain EFI48_RS06485 PF10609 NUBPL iron-transfer P-loop NTPase EFI48_RS06490 PF04545 Sigma-70, region 4 EFI48_RS06490 PF04539 Sigma-70 region 3 EFI48_RS06490 PF04542 Sigma-70 region 2 EFI48_RS06495 PF00072 Response regulator receiver domain EFI48_RS06500 PF04344 Chemotaxis phosphatase, CheZ EFI48_RS06505 PF01584 CheW-like domain EFI48_RS06505 PF01627 Hpt domain EFI48_RS06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS06505 PF02895 Signal transducing histidine kinase, homodimeric domain EFI48_RS06505 PF00072 Response regulator receiver domain EFI48_RS06510 PF00072 Response regulator receiver domain EFI48_RS06510 PF01339 CheB methylesterase EFI48_RS06515 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS06520 PF00691 OmpA family EFI48_RS06520 PF13677 Membrane MotB of proton-channel complex MotA/MotB EFI48_RS06525 PF13614 AAA domain EFI48_RS06535 PF01584 CheW-like domain EFI48_RS06545 PF00005 ABC transporter EFI48_RS06550 PF03379 CcmB protein EFI48_RS06555 PF01578 Cytochrome C assembly protein EFI48_RS06560 PF04995 Heme exporter protein D (CcmD) EFI48_RS06565 PF03100 CcmE EFI48_RS06570 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EFI48_RS06570 PF01578 Cytochrome C assembly protein EFI48_RS06575 PF08534 Redoxin EFI48_RS06580 PF03918 Cytochrome C biogenesis protein EFI48_RS06590 PF04333 MlaA lipoprotein EFI48_RS06595 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EFI48_RS06595 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EFI48_RS06600 PF00462 Glutaredoxin EFI48_RS06605 PF00291 Pyridoxal-phosphate dependent enzyme EFI48_RS06610 PF03222 Tryptophan/tyrosine permease family EFI48_RS06615 PF00871 Acetokinase family EFI48_RS06620 PF01228 Glycine radical EFI48_RS06620 PF02901 Pyruvate formate lyase-like EFI48_RS06625 PF01042 Endoribonuclease L-PSP EFI48_RS06630 PF01189 16S rRNA methyltransferase RsmB/F EFI48_RS06630 PF01029 NusB family EFI48_RS06665 PF01243 Pyridoxamine 5'-phosphate oxidase EFI48_RS06665 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EFI48_RS06670 PF13417 Glutathione S-transferase, N-terminal domain EFI48_RS06670 PF00043 Glutathione S-transferase, C-terminal domain EFI48_RS06690 PF08007 Cupin superfamily protein EFI48_RS06695 PF08328 Adenylosuccinate lyase C-terminal EFI48_RS06695 PF00206 Lyase EFI48_RS06700 PF04356 Protein of unknown function (DUF489) EFI48_RS06710 PF00293 NUDIX domain EFI48_RS06715 PF00849 RNA pseudouridylate synthase EFI48_RS06725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EFI48_RS06730 PF07690 Major Facilitator Superfamily EFI48_RS06735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EFI48_RS06735 PF02378 Phosphotransferase system, EIIC EFI48_RS06735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EFI48_RS06755 PF01609 Transposase DDE domain EFI48_RS06755 PF13808 DDE_Tnp_1-associated EFI48_RS06760 PF13808 DDE_Tnp_1-associated EFI48_RS06760 PF01609 Transposase DDE domain EFI48_RS06770 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS06775 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS06780 PF03466 LysR substrate binding domain EFI48_RS06785 PF00171 Aldehyde dehydrogenase family EFI48_RS06790 PF00202 Aminotransferase class-III EFI48_RS06795 PF00128 Alpha amylase, catalytic domain EFI48_RS06795 PF11941 Domain of unknown function (DUF3459) EFI48_RS06800 PF03466 LysR substrate binding domain EFI48_RS06800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS06805 PF03788 LrgA family EFI48_RS06810 PF04172 LrgB-like family EFI48_RS06815 PF00328 Histidine phosphatase superfamily (branch 2) EFI48_RS06840 PF00210 Ferritin-like domain EFI48_RS06860 PF08676 MutL C terminal dimerisation domain EFI48_RS06860 PF01119 DNA mismatch repair protein, C-terminal domain EFI48_RS06870 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS06870 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EFI48_RS06875 PF02378 Phosphotransferase system, EIIC EFI48_RS06875 PF00367 phosphotransferase system, EIIB EFI48_RS06880 PF00155 Aminotransferase class I and II EFI48_RS06885 PF02075 Crossover junction endodeoxyribonuclease RuvC EFI48_RS06895 PF00873 AcrB/AcrD/AcrF family EFI48_RS06900 PF09317 Domain of unknown function (DUF1974) EFI48_RS06900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EFI48_RS06900 PF02770 Acyl-CoA dehydrogenase, middle domain EFI48_RS06900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EFI48_RS06905 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS06925 PF01381 Helix-turn-helix EFI48_RS06970 PF00816 H-NS histone family EFI48_RS06980 PF09722 Protein of unknown function (DUF2384) EFI48_RS06985 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS06995 PF13185 GAF domain EFI48_RS06995 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS07005 PF05230 MASE2 domain EFI48_RS07005 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS07010 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS07010 PF00072 Response regulator receiver domain EFI48_RS07015 PF00158 Sigma-54 interaction domain EFI48_RS07015 PF01590 GAF domain EFI48_RS07020 PF00258 Flavodoxin EFI48_RS07020 PF00301 Rubredoxin EFI48_RS07020 PF00753 Metallo-beta-lactamase superfamily EFI48_RS07025 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS07025 PF18113 Rubredoxin binding C-terminal domain EFI48_RS07095 PF12838 4Fe-4S dicluster domain EFI48_RS07095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EFI48_RS07095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EFI48_RS07095 PF01568 Molydopterin dinucleotide binding domain EFI48_RS07095 PF00384 Molybdopterin oxidoreductase EFI48_RS07100 PF00563 EAL domain EFI48_RS07100 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS07100 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS07105 PF09456 RcsC Alpha-Beta-Loop (ABL) EFI48_RS07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS07105 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS07105 PF00072 Response regulator receiver domain EFI48_RS07115 PF01668 SmpB protein EFI48_RS07120 PF03364 Polyketide cyclase / dehydrase and lipid transport EFI48_RS07125 PF03658 RnfH family Ubiquitin EFI48_RS07130 PF01546 Peptidase family M20/M25/M40 EFI48_RS07130 PF07687 Peptidase dimerisation domain EFI48_RS07135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EFI48_RS07135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EFI48_RS07135 PF02770 Acyl-CoA dehydrogenase, middle domain EFI48_RS07135 PF09317 Domain of unknown function (DUF1974) EFI48_RS07140 PF13580 SIS domain EFI48_RS07145 PF13230 Glutamine amidotransferases class-II EFI48_RS07155 PF01933 Uncharacterised protein family UPF0052 EFI48_RS07165 PF00072 Response regulator receiver domain EFI48_RS07165 PF09456 RcsC Alpha-Beta-Loop (ABL) EFI48_RS07165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS07165 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS07175 PF00072 Response regulator receiver domain EFI48_RS07175 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS07180 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EFI48_RS07180 PF00672 HAMP domain EFI48_RS07180 PF07730 Histidine kinase EFI48_RS07185 PF04055 Radical SAM superfamily EFI48_RS07185 PF06463 Molybdenum Cofactor Synthesis C EFI48_RS07190 PF12838 4Fe-4S dicluster domain EFI48_RS07190 PF13187 4Fe-4S dicluster domain EFI48_RS07200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EFI48_RS07200 PF00384 Molybdopterin oxidoreductase EFI48_RS07200 PF01568 Molydopterin dinucleotide binding domain EFI48_RS07200 PF10518 TAT (twin-arginine translocation) pathway signal sequence EFI48_RS07205 PF12800 4Fe-4S binding domain EFI48_RS07205 PF12838 4Fe-4S dicluster domain EFI48_RS07210 PF13237 4Fe-4S dicluster domain EFI48_RS07210 PF12801 4Fe-4S binding domain EFI48_RS07215 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) EFI48_RS07220 PF03264 NapC/NirT cytochrome c family, N-terminal region EFI48_RS07225 PF00994 Probable molybdopterin binding domain EFI48_RS07230 PF01967 MoaC family EFI48_RS07235 PF02597 ThiS family EFI48_RS07240 PF02391 MoaE protein EFI48_RS07250 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS07255 PF00005 ABC transporter EFI48_RS07255 PF03459 TOBE domain EFI48_RS07260 PF12697 Alpha/beta hydrolase family EFI48_RS07265 PF00899 ThiF family EFI48_RS07270 PF00994 Probable molybdopterin binding domain EFI48_RS07270 PF03454 MoeA C-terminal region (domain IV) EFI48_RS07270 PF03453 MoeA N-terminal region (domain I and II) EFI48_RS07275 PF01227 GTP cyclohydrolase I EFI48_RS07280 PF17200 Single Cache domain 2 EFI48_RS07280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS07280 PF00672 HAMP domain EFI48_RS07285 PF01268 Formate--tetrahydrofolate ligase EFI48_RS07295 PF03466 LysR substrate binding domain EFI48_RS07295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS07300 PF04264 YceI-like domain EFI48_RS07310 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EFI48_RS07310 PF05221 S-adenosyl-L-homocysteine hydrolase EFI48_RS07325 PF07687 Peptidase dimerisation domain EFI48_RS07325 PF01546 Peptidase family M20/M25/M40 EFI48_RS07335 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EFI48_RS07335 PF17810 Arginine decarboxylase helical bundle domain EFI48_RS07335 PF17944 Arginine decarboxylase C-terminal helical extension EFI48_RS07345 PF14863 Alkyl sulfatase dimerisation EFI48_RS07345 PF00753 Metallo-beta-lactamase superfamily EFI48_RS07345 PF14864 Alkyl sulfatase C-terminal EFI48_RS07360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS07360 PF00672 HAMP domain EFI48_RS07360 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS07370 PF01042 Endoribonuclease L-PSP EFI48_RS07375 PF03313 Serine dehydratase alpha chain EFI48_RS07380 PF08348 YheO-like PAS domain EFI48_RS07380 PF13309 HTH domain EFI48_RS07385 PF00300 Histidine phosphatase superfamily (branch 1) EFI48_RS07390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS07390 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS07390 PF00672 HAMP domain EFI48_RS07395 PF00717 Peptidase S24-like EFI48_RS07395 PF01381 Helix-turn-helix EFI48_RS07510 PF08461 Ribonuclease R winged-helix domain EFI48_RS07515 PF11985 Protein of unknown function (DUF3486) EFI48_RS07520 PF03237 Terminase-like family EFI48_RS07525 PF06074 Protein of unknown function (DUF935) EFI48_RS07560 PF10123 Mu-like prophage I protein EFI48_RS07565 PF10124 Mu-like prophage major head subunit gpT EFI48_RS07645 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EFI48_RS07645 PF07055 Enoyl reductase FAD binding domain EFI48_RS07645 PF12241 Trans-2-enoyl-CoA reductase catalytic region EFI48_RS07650 PF03606 C4-dicarboxylate anaerobic carrier EFI48_RS07655 PF00155 Aminotransferase class I and II EFI48_RS07665 PF00230 Major intrinsic protein EFI48_RS07670 PF01464 Transglycosylase SLT domain EFI48_RS07670 PF10145 Phage-related minor tail protein EFI48_RS07670 PF01551 Peptidase family M23 EFI48_RS07685 PF13091 PLD-like domain EFI48_RS07685 PF13396 Phospholipase_D-nuclease N-terminal EFI48_RS07695 PF00551 Formyl transferase EFI48_RS07695 PF01842 ACT domain EFI48_RS07700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EFI48_RS07710 PF00085 Thioredoxin EFI48_RS07715 PF01648 4'-phosphopantetheinyl transferase superfamily EFI48_RS07720 PF00877 NlpC/P60 family EFI48_RS07725 PF05971 RNA methyltransferase EFI48_RS07730 PF01575 MaoC like domain EFI48_RS07735 PF00939 Sodium:sulfate symporter transmembrane region EFI48_RS07745 PF17969 L,D-transpeptidase C-terminal domain EFI48_RS07745 PF03734 L,D-transpeptidase catalytic domain EFI48_RS07745 PF01476 LysM domain EFI48_RS07755 PF00722 Glycosyl hydrolases family 16 EFI48_RS07760 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EFI48_RS07765 PF00232 Glycosyl hydrolase family 1 EFI48_RS07770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EFI48_RS07770 PF02378 Phosphotransferase system, EIIC EFI48_RS07775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EFI48_RS07780 PF00759 Glycosyl hydrolase family 9 EFI48_RS07780 PF02018 Carbohydrate binding domain EFI48_RS07780 PF02927 Cellulase N-terminal ig-like domain EFI48_RS07780 PF00404 Dockerin type I domain EFI48_RS07785 PF01915 Glycosyl hydrolase family 3 C-terminal domain EFI48_RS07785 PF00933 Glycosyl hydrolase family 3 N terminal domain EFI48_RS07785 PF14310 Fibronectin type III-like domain EFI48_RS07790 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS07790 PF00672 HAMP domain EFI48_RS07790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS07795 PF13416 Bacterial extracellular solute-binding protein EFI48_RS07800 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS07820 PF00873 AcrB/AcrD/AcrF family EFI48_RS07825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS07825 PF00529 HlyD membrane-fusion protein of T1SS EFI48_RS07830 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS07830 PF00072 Response regulator receiver domain EFI48_RS07835 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS07835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS07835 PF00672 HAMP domain EFI48_RS07840 PF00176 SNF2 family N-terminal domain EFI48_RS07840 PF04434 SWIM zinc finger EFI48_RS07840 PF00271 Helicase conserved C-terminal domain EFI48_RS07845 PF05472 DNA replication terminus site-binding protein (Ter protein) EFI48_RS07855 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EFI48_RS07860 PF01476 LysM domain EFI48_RS07860 PF01464 Transglycosylase SLT domain EFI48_RS07865 PF16123 Hydroxyacylglutathione hydrolase C-terminus EFI48_RS07865 PF00753 Metallo-beta-lactamase superfamily EFI48_RS07870 PF08241 Methyltransferase domain EFI48_RS07875 PF00075 RNase H EFI48_RS07880 PF00929 Exonuclease EFI48_RS07890 PF11849 Domain of unknown function (DUF3369) EFI48_RS07895 PF08021 Siderophore-interacting FAD-binding domain EFI48_RS07895 PF04954 Siderophore-interacting protein EFI48_RS07900 PF01032 FecCD transport family EFI48_RS07905 PF01032 FecCD transport family EFI48_RS07910 PF00005 ABC transporter EFI48_RS07915 PF01497 Periplasmic binding protein EFI48_RS07925 PF00873 AcrB/AcrD/AcrF family EFI48_RS07930 PF00529 HlyD membrane-fusion protein of T1SS EFI48_RS07930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS07940 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EFI48_RS07955 PF00873 AcrB/AcrD/AcrF family EFI48_RS07960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS07965 PF03372 Endonuclease/Exonuclease/phosphatase family EFI48_RS07980 PF02424 ApbE family EFI48_RS07985 PF00127 Copper binding proteins, plastocyanin/azurin family EFI48_RS07995 PF04337 Protein of unknown function, DUF480 EFI48_RS08000 PF13188 PAS domain EFI48_RS08000 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS08000 PF00563 EAL domain EFI48_RS08000 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS08010 PF04325 Protein of unknown function (DUF465) EFI48_RS08020 PF01554 MatE EFI48_RS08045 PF00465 Iron-containing alcohol dehydrogenase EFI48_RS08055 PF08359 YsiA-like protein, C-terminal region EFI48_RS08055 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS08060 PF00171 Aldehyde dehydrogenase family EFI48_RS08070 PF01156 Inosine-uridine preferring nucleoside hydrolase EFI48_RS08080 PF00034 Cytochrome c EFI48_RS08080 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EFI48_RS08090 PF05656 Protein of unknown function (DUF805) EFI48_RS08110 PF00672 HAMP domain EFI48_RS08110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS08115 PF01238 Phosphomannose isomerase type I EFI48_RS08120 PF12833 Helix-turn-helix domain EFI48_RS08125 PF00180 Isocitrate/isopropylmalate dehydrogenase EFI48_RS08135 PF00291 Pyridoxal-phosphate dependent enzyme EFI48_RS08140 PF02447 GntP family permease EFI48_RS08145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS08145 PF03466 LysR substrate binding domain EFI48_RS08155 PF00877 NlpC/P60 family EFI48_RS08160 PF03466 LysR substrate binding domain EFI48_RS08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS08165 PF10417 C-terminal domain of 1-Cys peroxiredoxin EFI48_RS08165 PF00578 AhpC/TSA family EFI48_RS08185 PF08003 Protein of unknown function (DUF1698) EFI48_RS08190 PF13649 Methyltransferase domain EFI48_RS08195 PF01904 Protein of unknown function DUF72 EFI48_RS08205 PF02938 GAD domain EFI48_RS08205 PF01336 OB-fold nucleic acid binding domain EFI48_RS08205 PF00152 tRNA synthetases class II (D, K and N) EFI48_RS08210 PF01709 Transcriptional regulator EFI48_RS08220 PF00171 Aldehyde dehydrogenase family EFI48_RS08220 PF00465 Iron-containing alcohol dehydrogenase EFI48_RS08225 PF01914 MarC family integral membrane protein EFI48_RS08230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS08235 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS08240 PF12911 N-terminal TM domain of oligopeptide transport permease C EFI48_RS08240 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS08245 PF00005 ABC transporter EFI48_RS08245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS08250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS08250 PF00005 ABC transporter EFI48_RS08255 PF03741 Integral membrane protein TerC family EFI48_RS08260 PF01168 Alanine racemase, N-terminal domain EFI48_RS08260 PF00842 Alanine racemase, C-terminal domain EFI48_RS08270 PF00437 Type II/IV secretion system protein EFI48_RS08285 PF01032 FecCD transport family EFI48_RS08290 PF00005 ABC transporter EFI48_RS08295 PF00793 DAHP synthetase I family EFI48_RS08300 PF01219 Prokaryotic diacylglycerol kinase EFI48_RS08305 PF01842 ACT domain EFI48_RS08305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EFI48_RS08305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EFI48_RS08310 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EFI48_RS08315 PF01812 5-formyltetrahydrofolate cyclo-ligase family EFI48_RS08330 PF01113 Dihydrodipicolinate reductase, N-terminus EFI48_RS08330 PF05173 Dihydrodipicolinate reductase, C-terminus EFI48_RS08335 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EFI48_RS08335 PF00117 Glutamine amidotransferase class-I EFI48_RS08340 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EFI48_RS08340 PF02142 MGS-like domain EFI48_RS08340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EFI48_RS08345 PF07759 Protein of unknown function (DUF1615) EFI48_RS08350 PF01817 Chorismate mutase type II EFI48_RS08350 PF02153 Prephenate dehydrogenase EFI48_RS08355 PF00793 DAHP synthetase I family EFI48_RS08360 PF00483 Nucleotidyl transferase EFI48_RS08365 PF02355 Protein export membrane protein EFI48_RS08365 PF07549 SecD/SecF GG Motif EFI48_RS08370 PF13721 SecD export protein N-terminal TM region EFI48_RS08370 PF07549 SecD/SecF GG Motif EFI48_RS08370 PF02355 Protein export membrane protein EFI48_RS08405 PF01230 HIT domain EFI48_RS08410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS08410 PF00672 HAMP domain EFI48_RS08420 PF01979 Amidohydrolase family EFI48_RS08435 PF00375 Sodium:dicarboxylate symporter family EFI48_RS08440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS08440 PF00672 HAMP domain EFI48_RS08450 PF05661 Protein of unknown function (DUF808) EFI48_RS08455 PF08439 Oligopeptidase F EFI48_RS08455 PF01432 Peptidase family M3 EFI48_RS08460 PF00860 Permease family EFI48_RS08465 PF05728 Uncharacterised protein family (UPF0227) EFI48_RS08470 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS08480 PF04055 Radical SAM superfamily EFI48_RS08485 PF00563 EAL domain EFI48_RS08485 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS08485 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS08490 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS08490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EFI48_RS08500 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain EFI48_RS08500 PF07703 Alpha-2-macroglobulin bait region domain EFI48_RS08500 PF00207 Alpha-2-macroglobulin family EFI48_RS08500 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain EFI48_RS08500 PF17962 Bacterial macroglobulin domain 6 EFI48_RS08500 PF01835 MG2 domain EFI48_RS08500 PF07678 A-macroglobulin TED domain EFI48_RS08500 PF11974 Bacterial alpha-2-macroglobulin MG3 domain EFI48_RS08500 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain EFI48_RS08505 PF00905 Penicillin binding protein transpeptidase domain EFI48_RS08505 PF00912 Transglycosylase EFI48_RS08505 PF06832 Penicillin-Binding Protein C-terminus Family EFI48_RS08520 PF02926 THUMP domain EFI48_RS08520 PF02568 Thiamine biosynthesis protein (ThiI) EFI48_RS08530 PF03458 UPF0126 domain EFI48_RS08535 PF07196 Flagellin hook IN motif EFI48_RS08535 PF00669 Bacterial flagellin N-terminal helical region EFI48_RS08535 PF00700 Bacterial flagellin C-terminal helical region EFI48_RS08540 PF00669 Bacterial flagellin N-terminal helical region EFI48_RS08540 PF07196 Flagellin hook IN motif EFI48_RS08540 PF00700 Bacterial flagellin C-terminal helical region EFI48_RS08545 PF00700 Bacterial flagellin C-terminal helical region EFI48_RS08545 PF07196 Flagellin hook IN motif EFI48_RS08545 PF00669 Bacterial flagellin N-terminal helical region EFI48_RS08555 PF02465 Flagellar hook-associated protein 2 N-terminus EFI48_RS08555 PF07195 Flagellar hook-associated protein 2 C-terminus EFI48_RS08555 PF07196 Flagellin hook IN motif EFI48_RS08560 PF02561 Flagellar protein FliS EFI48_RS08580 PF08666 SAF domain EFI48_RS08580 PF03102 NeuB family EFI48_RS08590 PF00202 Aminotransferase class-III EFI48_RS08595 PF02348 Cytidylyltransferase EFI48_RS08605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EFI48_RS08610 PF02719 Polysaccharide biosynthesis protein EFI48_RS08615 PF01497 Periplasmic binding protein EFI48_RS08625 PF01048 Phosphorylase superfamily EFI48_RS08630 PF02535 ZIP Zinc transporter EFI48_RS08635 PF00459 Inositol monophosphatase family EFI48_RS08645 PF02798 Glutathione S-transferase, N-terminal domain EFI48_RS08645 PF00043 Glutathione S-transferase, C-terminal domain EFI48_RS08650 PF07690 Major Facilitator Superfamily EFI48_RS08655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS08655 PF03466 LysR substrate binding domain EFI48_RS08660 PF02634 FdhD/NarQ family EFI48_RS08665 PF00384 Molybdopterin oxidoreductase EFI48_RS08675 PF05164 Cell division protein ZapA EFI48_RS08680 PF03695 Uncharacterised protein family (UPF0149) EFI48_RS08685 PF01494 FAD binding domain EFI48_RS08690 PF01494 FAD binding domain EFI48_RS08700 PF01571 Aminomethyltransferase folate-binding domain EFI48_RS08700 PF08669 Glycine cleavage T-protein C-terminal barrel domain EFI48_RS08705 PF01597 Glycine cleavage H-protein EFI48_RS08710 PF02347 Glycine cleavage system P-protein EFI48_RS08785 PF07690 Major Facilitator Superfamily EFI48_RS08790 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS08790 PF02909 Tetracyclin repressor-like, C-terminal domain EFI48_RS08795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS08795 PF08447 PAS fold EFI48_RS08815 PF00324 Amino acid permease EFI48_RS08825 PF03618 Kinase/pyrophosphorylase EFI48_RS08830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EFI48_RS08830 PF02896 PEP-utilising enzyme, TIM barrel domain EFI48_RS08830 PF00391 PEP-utilising enzyme, mobile domain EFI48_RS08840 PF01483 Proprotein convertase P-domain EFI48_RS08840 PF00082 Subtilase family EFI48_RS08845 PF03180 NLPA lipoprotein EFI48_RS08850 PF11893 Domain of unknown function (DUF3413) EFI48_RS08850 PF00884 Sulfatase EFI48_RS08855 PF07208 Protein of unknown function (DUF1414) EFI48_RS08860 PF04245 37-kD nucleoid-associated bacterial protein EFI48_RS08865 PF01547 Bacterial extracellular solute-binding protein EFI48_RS08870 PF14785 Maltose transport system permease protein MalF P2 domain EFI48_RS08870 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS08875 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS08880 PF08402 TOBE domain EFI48_RS08880 PF00005 ABC transporter EFI48_RS08885 PF03976 Polyphosphate kinase 2 (PPK2) EFI48_RS08890 PF00561 alpha/beta hydrolase fold EFI48_RS08900 PF01594 AI-2E family transporter EFI48_RS08910 PF07720 Tetratricopeptide repeat EFI48_RS08910 PF01435 Peptidase family M48 EFI48_RS08915 PF00578 AhpC/TSA family EFI48_RS08920 PF03960 ArsC family EFI48_RS08930 PF04336 Acyl carrier protein phosphodiesterase EFI48_RS08935 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS08940 PF01979 Amidohydrolase family EFI48_RS08945 PF03956 Lysine exporter LysO EFI48_RS08950 PF00005 ABC transporter EFI48_RS08955 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS08960 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS08965 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS08970 PF00849 RNA pseudouridylate synthase EFI48_RS08980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EFI48_RS08985 PF04209 homogentisate 1,2-dioxygenase EFI48_RS08995 PF02798 Glutathione S-transferase, N-terminal domain EFI48_RS08995 PF14497 Glutathione S-transferase, C-terminal domain EFI48_RS09000 PF01970 Tripartite tricarboxylate transporter TctA family EFI48_RS09015 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS09015 PF00072 Response regulator receiver domain EFI48_RS09020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS09020 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS09020 PF08521 Two-component sensor kinase N-terminal EFI48_RS09025 PF04226 Transglycosylase associated protein EFI48_RS09035 PF18642 Immunomodulating metalloprotease helical domain EFI48_RS09035 PF13402 Peptidase M60, enhancin and enhancin-like EFI48_RS09035 PF18650 Immunomodulating metalloprotease N-terminal domain EFI48_RS09040 PF00149 Calcineurin-like phosphoesterase EFI48_RS09050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EFI48_RS09055 PF01406 tRNA synthetases class I (C) catalytic domain EFI48_RS09055 PF09190 DALR domain EFI48_RS09060 PF13361 UvrD-like helicase C-terminal domain EFI48_RS09060 PF00580 UvrD/REP helicase N-terminal domain EFI48_RS09100 PF01169 Uncharacterized protein family UPF0016 EFI48_RS09105 PF01253 Translation initiation factor SUI1 EFI48_RS09115 PF07664 Ferrous iron transport protein B C terminus EFI48_RS09115 PF02421 Ferrous iron transport protein B EFI48_RS09115 PF07670 Nucleoside recognition EFI48_RS09130 PF00271 Helicase conserved C-terminal domain EFI48_RS09130 PF00270 DEAD/DEAH box helicase EFI48_RS09140 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EFI48_RS09140 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS09145 PF01493 GXGXG motif EFI48_RS09145 PF01645 Conserved region in glutamate synthase EFI48_RS09145 PF00310 Glutamine amidotransferases class-II EFI48_RS09145 PF04898 Glutamate synthase central domain EFI48_RS09150 PF16199 Radical_SAM C-terminal domain EFI48_RS09150 PF04055 Radical SAM superfamily EFI48_RS09155 PF00664 ABC transporter transmembrane region EFI48_RS09155 PF03412 Peptidase C39 family EFI48_RS09155 PF00005 ABC transporter EFI48_RS09205 PF13192 Thioredoxin domain EFI48_RS09205 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS09210 PF10417 C-terminal domain of 1-Cys peroxiredoxin EFI48_RS09210 PF00578 AhpC/TSA family EFI48_RS09215 PF00571 CBS domain EFI48_RS09220 PF02547 Queuosine biosynthesis protein EFI48_RS09225 PF01702 Queuine tRNA-ribosyltransferase EFI48_RS09230 PF02699 Preprotein translocase subunit EFI48_RS09235 PF02355 Protein export membrane protein EFI48_RS09235 PF13721 SecD export protein N-terminal TM region EFI48_RS09235 PF07549 SecD/SecF GG Motif EFI48_RS09240 PF02355 Protein export membrane protein EFI48_RS09240 PF07549 SecD/SecF GG Motif EFI48_RS09250 PF07719 Tetratricopeptide repeat EFI48_RS09250 PF13181 Tetratricopeptide repeat EFI48_RS09255 PF01136 Peptidase family U32 EFI48_RS09260 PF01136 Peptidase family U32 EFI48_RS09265 PF02036 SCP-2 sterol transfer family EFI48_RS09275 PF00588 SpoU rRNA Methylase family EFI48_RS09280 PF02082 Transcriptional regulator EFI48_RS09285 PF00266 Aminotransferase class-V EFI48_RS09290 PF01592 NifU-like N terminal domain EFI48_RS09295 PF01521 Iron-sulphur cluster biosynthesis EFI48_RS09300 PF07743 HSCB C-terminal oligomerisation domain EFI48_RS09300 PF00226 DnaJ domain EFI48_RS09305 PF00012 Hsp70 protein EFI48_RS09310 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS09315 PF00883 Cytosol aminopeptidase family, catalytic domain EFI48_RS09315 PF12404 Peptidase EFI48_RS09320 PF00883 Cytosol aminopeptidase family, catalytic domain EFI48_RS09320 PF12404 Peptidase EFI48_RS09325 PF00334 Nucleoside diphosphate kinase EFI48_RS09330 PF04055 Radical SAM superfamily EFI48_RS09340 PF13464 Domain of unknown function (DUF4115) EFI48_RS09345 PF04551 GcpE protein EFI48_RS09350 PF03129 Anticodon binding domain EFI48_RS09350 PF13393 Histidyl-tRNA synthetase EFI48_RS09355 PF09976 Tetratricopeptide repeat-like domain EFI48_RS09360 PF13360 PQQ-like domain EFI48_RS09365 PF01926 50S ribosome-binding GTPase EFI48_RS09365 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EFI48_RS09370 PF07191 zinc-ribbons EFI48_RS09380 PF01464 Transglycosylase SLT domain EFI48_RS09380 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS09385 PF02769 AIR synthase related protein, C-terminal domain EFI48_RS09385 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EFI48_RS09385 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EFI48_RS09390 PF01966 HD domain EFI48_RS09395 PF00072 Response regulator receiver domain EFI48_RS09405 PF00361 Proton-conducting membrane transporter EFI48_RS09410 PF00361 Proton-conducting membrane transporter EFI48_RS09415 PF00361 Proton-conducting membrane transporter EFI48_RS09415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EFI48_RS09420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EFI48_RS09425 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EFI48_RS09430 PF12838 4Fe-4S dicluster domain EFI48_RS09435 PF00146 NADH dehydrogenase EFI48_RS09440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EFI48_RS09440 PF00384 Molybdopterin oxidoreductase EFI48_RS09440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EFI48_RS09445 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EFI48_RS09445 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EFI48_RS09455 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EFI48_RS09455 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EFI48_RS09460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EFI48_RS09465 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EFI48_RS09485 PF00326 Prolyl oligopeptidase family EFI48_RS09485 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EFI48_RS09490 PF00593 TonB dependent receptor EFI48_RS09490 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS09495 PF00691 OmpA family EFI48_RS09495 PF13677 Membrane MotB of proton-channel complex MotA/MotB EFI48_RS09500 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS09515 PF04536 TPM domain EFI48_RS09525 PF03411 Penicillin-insensitive murein endopeptidase EFI48_RS09530 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS09535 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS09540 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS09545 PF00005 ABC transporter EFI48_RS09555 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) EFI48_RS09560 PF00248 Aldo/keto reductase family EFI48_RS09570 PF00106 short chain dehydrogenase EFI48_RS09575 PF01212 Beta-eliminating lyase EFI48_RS09585 PF00072 Response regulator receiver domain EFI48_RS09590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09590 PF03466 LysR substrate binding domain EFI48_RS09595 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS09595 PF00563 EAL domain EFI48_RS09595 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS09595 PF13188 PAS domain EFI48_RS09600 PF03806 AbgT putative transporter family EFI48_RS09605 PF00881 Nitroreductase family EFI48_RS09620 PF07690 Major Facilitator Superfamily EFI48_RS09625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09625 PF03466 LysR substrate binding domain EFI48_RS09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09630 PF03466 LysR substrate binding domain EFI48_RS09635 PF00925 GTP cyclohydrolase II EFI48_RS09640 PF02224 Cytidylate kinase EFI48_RS09645 PF00575 S1 RNA binding domain EFI48_RS09650 PF00216 Bacterial DNA-binding protein EFI48_RS09660 PF18073 Rubredoxin metal binding domain EFI48_RS09665 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EFI48_RS09680 PF06508 Queuosine biosynthesis protein QueC EFI48_RS09685 PF04055 Radical SAM superfamily EFI48_RS09690 PF12843 Putative quorum-sensing-regulated virulence factor EFI48_RS09695 PF01923 Cobalamin adenosyltransferase EFI48_RS09700 PF00816 H-NS histone family EFI48_RS09705 PF03553 Na+/H+ antiporter family EFI48_RS09710 PF00265 Thymidine kinase EFI48_RS09720 PF10722 Putative bacterial sensory transduction regulator EFI48_RS09730 PF02132 RecR protein EFI48_RS09730 PF13662 Toprim domain EFI48_RS09735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS09735 PF00183 Hsp90 protein EFI48_RS09740 PF00005 ABC transporter EFI48_RS09745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS09745 PF00005 ABC transporter EFI48_RS09750 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS09750 PF12911 N-terminal TM domain of oligopeptide transport permease C EFI48_RS09755 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS09760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS09765 PF00158 Sigma-54 interaction domain EFI48_RS09765 PF02954 Bacterial regulatory protein, Fis family EFI48_RS09770 PF04012 PspA/IM30 family EFI48_RS09775 PF06667 Phage shock protein B EFI48_RS09785 PF04317 YcjX-like family, DUF463 EFI48_RS09790 PF05128 Domain of unknown function (DUF697) EFI48_RS09795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09795 PF03466 LysR substrate binding domain EFI48_RS09800 PF13416 Bacterial extracellular solute-binding protein EFI48_RS09805 PF00005 ABC transporter EFI48_RS09805 PF08402 TOBE domain EFI48_RS09810 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS09815 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS09820 PF00171 Aldehyde dehydrogenase family EFI48_RS09825 PF00351 Biopterin-dependent aromatic amino acid hydroxylase EFI48_RS09830 PF01329 Pterin 4 alpha carbinolamine dehydratase EFI48_RS09840 PF18024 Helix-turn-helix domain EFI48_RS09840 PF00158 Sigma-54 interaction domain EFI48_RS09850 PF17152 Periplasmic sensor domain EFI48_RS09850 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS09855 PF00691 OmpA family EFI48_RS09860 PF03741 Integral membrane protein TerC family EFI48_RS09870 PF08891 YfcL protein EFI48_RS09875 PF00501 AMP-binding enzyme EFI48_RS09880 PF01053 Cys/Met metabolism PLP-dependent enzyme EFI48_RS09890 PF13460 NAD(P)H-binding EFI48_RS09895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09895 PF03466 LysR substrate binding domain EFI48_RS09900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09900 PF03466 LysR substrate binding domain EFI48_RS09905 PF07690 Major Facilitator Superfamily EFI48_RS09910 PF02678 Pirin EFI48_RS09910 PF05726 Pirin C-terminal cupin domain EFI48_RS09915 PF00857 Isochorismatase family EFI48_RS09920 PF03466 LysR substrate binding domain EFI48_RS09920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09925 PF03466 LysR substrate binding domain EFI48_RS09930 PF01717 Cobalamin-independent synthase, Catalytic domain EFI48_RS09930 PF08267 Cobalamin-independent synthase, N-terminal domain EFI48_RS09940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS09940 PF03466 LysR substrate binding domain EFI48_RS09945 PF00232 Glycosyl hydrolase family 1 EFI48_RS09950 PF18381 YcaO cyclodehydratase C-terminal domain EFI48_RS09950 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding EFI48_RS09955 PF01226 Formate/nitrite transporter EFI48_RS09960 PF01228 Glycine radical EFI48_RS09960 PF02901 Pyruvate formate lyase-like EFI48_RS09965 PF03692 Putative zinc- or iron-chelating domain EFI48_RS09980 PF00343 Carbohydrate phosphorylase EFI48_RS09985 PF00939 Sodium:sulfate symporter transmembrane region EFI48_RS09990 PF00085 Thioredoxin EFI48_RS09995 PF00672 HAMP domain EFI48_RS09995 PF00072 Response regulator receiver domain EFI48_RS09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS09995 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS09995 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EFI48_RS09995 PF01627 Hpt domain EFI48_RS10000 PF00664 ABC transporter transmembrane region EFI48_RS10000 PF00005 ABC transporter EFI48_RS10005 PF00005 ABC transporter EFI48_RS10005 PF00664 ABC transporter transmembrane region EFI48_RS10030 PF08543 Phosphomethylpyrimidine kinase EFI48_RS10035 PF00465 Iron-containing alcohol dehydrogenase EFI48_RS10040 PF13673 Acetyltransferase (GNAT) domain EFI48_RS10050 PF01928 CYTH domain EFI48_RS10060 PF13673 Acetyltransferase (GNAT) domain EFI48_RS10070 PF00285 Citrate synthase, C-terminal domain EFI48_RS10075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EFI48_RS10080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EFI48_RS10085 PF00890 FAD binding domain EFI48_RS10085 PF02910 Fumarate reductase flavoprotein C-term EFI48_RS10090 PF13085 2Fe-2S iron-sulfur cluster binding domain EFI48_RS10095 PF16078 2-oxoglutarate dehydrogenase N-terminus EFI48_RS10095 PF02779 Transketolase, pyrimidine binding domain EFI48_RS10095 PF16870 2-oxoglutarate dehydrogenase C-terminal EFI48_RS10095 PF00676 Dehydrogenase E1 component EFI48_RS10100 PF02817 e3 binding domain EFI48_RS10100 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EFI48_RS10100 PF00364 Biotin-requiring enzyme EFI48_RS10105 PF08442 ATP-grasp domain EFI48_RS10105 PF00549 CoA-ligase EFI48_RS10110 PF02629 CoA binding domain EFI48_RS10110 PF00549 CoA-ligase EFI48_RS10125 PF01184 GPR1/FUN34/yaaH family EFI48_RS10140 PF00376 MerR family regulatory protein EFI48_RS10140 PF09278 MerR, DNA binding EFI48_RS10145 PF00682 HMGL-like EFI48_RS10150 PF00289 Biotin carboxylase, N-terminal domain EFI48_RS10150 PF00364 Biotin-requiring enzyme EFI48_RS10150 PF02785 Biotin carboxylase C-terminal domain EFI48_RS10150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EFI48_RS10155 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS10160 PF01039 Carboxyl transferase domain EFI48_RS10165 PF02770 Acyl-CoA dehydrogenase, middle domain EFI48_RS10165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EFI48_RS10165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EFI48_RS10170 PF02770 Acyl-CoA dehydrogenase, middle domain EFI48_RS10170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EFI48_RS10170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EFI48_RS10175 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS10180 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS10185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EFI48_RS10185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EFI48_RS10195 PF13520 Amino acid permease EFI48_RS10200 PF01925 Sulfite exporter TauE/SafE EFI48_RS10215 PF07690 Major Facilitator Superfamily EFI48_RS10225 PF02129 X-Pro dipeptidyl-peptidase (S15 family) EFI48_RS10230 PF03466 LysR substrate binding domain EFI48_RS10230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS10240 PF09308 LuxQ, periplasmic EFI48_RS10240 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS10240 PF00072 Response regulator receiver domain EFI48_RS10270 PF00072 Response regulator receiver domain EFI48_RS10270 PF00211 Adenylate and Guanylate cyclase catalytic domain EFI48_RS10275 PF00534 Glycosyl transferases group 1 EFI48_RS10280 PF02397 Bacterial sugar transferase EFI48_RS10285 PF00535 Glycosyl transferase family 2 EFI48_RS10285 PF07238 PilZ domain EFI48_RS10285 PF03552 Cellulose synthase EFI48_RS10290 PF13439 Glycosyltransferase Family 4 EFI48_RS10290 PF00534 Glycosyl transferases group 1 EFI48_RS10355 PF13439 Glycosyltransferase Family 4 EFI48_RS10355 PF00534 Glycosyl transferases group 1 EFI48_RS10360 PF00862 Sucrose synthase EFI48_RS10360 PF00534 Glycosyl transferases group 1 EFI48_RS10365 PF01590 GAF domain EFI48_RS10365 PF00360 Phytochrome region EFI48_RS10365 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS10365 PF00563 EAL domain EFI48_RS10370 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal EFI48_RS10370 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EFI48_RS10375 PF13247 4Fe-4S dicluster domain EFI48_RS10380 PF03916 Polysulphide reductase, NrfD EFI48_RS10385 PF00374 Nickel-dependent hydrogenase EFI48_RS10390 PF01750 Hydrogenase maturation protease EFI48_RS10395 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE EFI48_RS10400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS10405 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS10410 PF12911 N-terminal TM domain of oligopeptide transport permease C EFI48_RS10410 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS10415 PF00005 ABC transporter EFI48_RS10420 PF00005 ABC transporter EFI48_RS10425 PF02492 CobW/HypB/UreG, nucleotide-binding domain EFI48_RS10430 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA EFI48_RS10435 PF00586 AIR synthase related protein, N-terminal domain EFI48_RS10435 PF02769 AIR synthase related protein, C-terminal domain EFI48_RS10440 PF01924 Hydrogenase formation hypA family EFI48_RS10445 PF01455 HupF/HypC family EFI48_RS10450 PF01300 Telomere recombination EFI48_RS10450 PF00708 Acylphosphatase EFI48_RS10450 PF17788 HypF Kae1-like domain EFI48_RS10450 PF07503 HypF finger EFI48_RS10455 PF03144 Elongation factor Tu domain 2 EFI48_RS10455 PF00009 Elongation factor Tu GTP binding domain EFI48_RS10455 PF09105 Elongation factor SelB, winged helix EFI48_RS10455 PF09106 Elongation factor SelB, winged helix EFI48_RS10455 PF09107 Elongation factor SelB, winged helix EFI48_RS10460 PF12390 Selenocysteine synthase N terminal EFI48_RS10460 PF03841 L-seryl-tRNA selenium transferase EFI48_RS10465 PF01750 Hydrogenase maturation protease EFI48_RS10470 PF07450 Formate hydrogenlyase maturation protein HycH EFI48_RS10475 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EFI48_RS10480 PF12838 4Fe-4S dicluster domain EFI48_RS10485 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EFI48_RS10485 PF00374 Nickel-dependent hydrogenase EFI48_RS10485 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EFI48_RS10490 PF00146 NADH dehydrogenase EFI48_RS10495 PF00361 Proton-conducting membrane transporter EFI48_RS10500 PF12798 4Fe-4S binding domain EFI48_RS10500 PF00037 4Fe-4S binding domain EFI48_RS10505 PF02705 K+ potassium transporter EFI48_RS10520 PF13247 4Fe-4S dicluster domain EFI48_RS10520 PF12800 4Fe-4S binding domain EFI48_RS10535 PF00158 Sigma-54 interaction domain EFI48_RS10535 PF02954 Bacterial regulatory protein, Fis family EFI48_RS10535 PF01590 GAF domain EFI48_RS10540 PF02634 FdhD/NarQ family EFI48_RS10545 PF02774 Semialdehyde dehydrogenase, dimerisation domain EFI48_RS10545 PF01118 Semialdehyde dehydrogenase, NAD binding domain EFI48_RS10550 PF01266 FAD dependent oxidoreductase EFI48_RS10555 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EFI48_RS10565 PF01212 Beta-eliminating lyase EFI48_RS10570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EFI48_RS10570 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region EFI48_RS10575 PF04172 LrgB-like family EFI48_RS10580 PF03788 LrgA family EFI48_RS10595 PF08411 Exonuclease C-terminal EFI48_RS10595 PF00929 Exonuclease EFI48_RS10600 PF04055 Radical SAM superfamily EFI48_RS10600 PF13186 Iron-sulfur cluster-binding domain EFI48_RS10610 PF03781 Sulfatase-modifying factor enzyme 1 EFI48_RS10615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS10615 PF03466 LysR substrate binding domain EFI48_RS10625 PF13519 von Willebrand factor type A domain EFI48_RS10625 PF07584 Aerotolerance regulator N-terminal EFI48_RS10630 PF07584 Aerotolerance regulator N-terminal EFI48_RS10630 PF13519 von Willebrand factor type A domain EFI48_RS10645 PF07726 ATPase family associated with various cellular activities (AAA) EFI48_RS10645 PF17863 AAA lid domain EFI48_RS10650 PF00884 Sulfatase EFI48_RS10655 PF01966 HD domain EFI48_RS10660 PF01743 Poly A polymerase head domain EFI48_RS10660 PF01368 DHH family EFI48_RS10660 PF02272 DHHA1 domain EFI48_RS10660 PF00571 CBS domain EFI48_RS10665 PF11898 Domain of unknown function (DUF3418) EFI48_RS10665 PF00270 DEAD/DEAH box helicase EFI48_RS10665 PF00271 Helicase conserved C-terminal domain EFI48_RS10665 PF04408 Helicase associated domain (HA2) EFI48_RS10665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EFI48_RS10675 PF01386 Ribosomal L25p family EFI48_RS10680 PF00376 MerR family regulatory protein EFI48_RS10680 PF09278 MerR, DNA binding EFI48_RS10685 PF02803 Thiolase, C-terminal domain EFI48_RS10685 PF00108 Thiolase, N-terminal domain EFI48_RS10690 PF00563 EAL domain EFI48_RS10690 PF08668 HDOD domain EFI48_RS10695 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EFI48_RS10700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EFI48_RS10710 PF04542 Sigma-70 region 2 EFI48_RS10710 PF08281 Sigma-70, region 4 EFI48_RS10720 PF13519 von Willebrand factor type A domain EFI48_RS10735 PF01882 Protein of unknown function DUF58 EFI48_RS10740 PF17863 AAA lid domain EFI48_RS10740 PF07726 ATPase family associated with various cellular activities (AAA) EFI48_RS10745 PF02803 Thiolase, C-terminal domain EFI48_RS10745 PF00108 Thiolase, N-terminal domain EFI48_RS10750 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS10750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EFI48_RS10750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EFI48_RS10755 PF04293 SpoVR like protein EFI48_RS10760 PF04285 Protein of unknown function (DUF444) EFI48_RS10765 PF06798 PrkA serine protein kinase C-terminal domain EFI48_RS10765 PF08298 PrkA AAA domain EFI48_RS10770 PF00271 Helicase conserved C-terminal domain EFI48_RS10770 PF09382 RQC domain EFI48_RS10770 PF00270 DEAD/DEAH box helicase EFI48_RS10770 PF00570 HRDC domain EFI48_RS10770 PF16124 RecQ zinc-binding EFI48_RS10775 PF00375 Sodium:dicarboxylate symporter family EFI48_RS10785 PF03222 Tryptophan/tyrosine permease family EFI48_RS10790 PF00293 NUDIX domain EFI48_RS10795 PF04715 Anthranilate synthase component I, N terminal region EFI48_RS10795 PF00425 chorismate binding enzyme EFI48_RS10805 PF08274 PhnA Zinc-Ribbon EFI48_RS10805 PF03831 PhnA domain EFI48_RS10815 PF08329 Chitinase A, N-terminal domain EFI48_RS10815 PF00704 Glycosyl hydrolases family 18 EFI48_RS10825 PF00300 Histidine phosphatase superfamily (branch 1) EFI48_RS10830 PF08448 PAS fold EFI48_RS10830 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS10835 PF01713 Smr domain EFI48_RS10840 PF05175 Methyltransferase small domain EFI48_RS10845 PF01264 Chorismate synthase EFI48_RS10855 PF00271 Helicase conserved C-terminal domain EFI48_RS10855 PF00270 DEAD/DEAH box helicase EFI48_RS10865 PF01124 MAPEG family EFI48_RS10875 PF03222 Tryptophan/tyrosine permease family EFI48_RS10880 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS10880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EFI48_RS10885 PF00381 PTS HPr component phosphorylation site EFI48_RS10885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EFI48_RS10890 PF00294 pfkB family carbohydrate kinase EFI48_RS10895 PF02378 Phosphotransferase system, EIIC EFI48_RS10895 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EFI48_RS10900 PF12111 Polyribonucleotide phosphorylase C terminal EFI48_RS10900 PF00575 S1 RNA binding domain EFI48_RS10900 PF10150 Ribonuclease E/G family EFI48_RS10905 PF01479 S4 domain EFI48_RS10905 PF00849 RNA pseudouridylate synthase EFI48_RS10915 PF02545 Maf-like protein EFI48_RS10920 PF02620 Large ribosomal RNA subunit accumulation protein YceD EFI48_RS10925 PF01783 Ribosomal L32p protein family EFI48_RS10930 PF02504 Fatty acid synthesis protein EFI48_RS10935 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EFI48_RS10935 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EFI48_RS10940 PF00698 Acyl transferase domain EFI48_RS10950 PF00550 Phosphopantetheine attachment site EFI48_RS10955 PF02801 Beta-ketoacyl synthase, C-terminal domain EFI48_RS10955 PF00109 Beta-ketoacyl synthase, N-terminal domain EFI48_RS10960 PF01063 Amino-transferase class IV EFI48_RS10965 PF02618 YceG-like family EFI48_RS10970 PF02223 Thymidylate kinase EFI48_RS10975 PF09115 DNA polymerase III, delta subunit, C terminal EFI48_RS10980 PF01026 TatD related DNase EFI48_RS10985 PF00589 Phage integrase family EFI48_RS10995 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF EFI48_RS10995 PF01189 16S rRNA methyltransferase RsmB/F EFI48_RS10995 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF EFI48_RS11000 PF02470 MlaD protein EFI48_RS11005 PF04403 Paraquat-inducible protein A EFI48_RS11020 PF00285 Citrate synthase, C-terminal domain EFI48_RS11025 PF03972 MmgE/PrpD family EFI48_RS11040 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain EFI48_RS11040 PF06974 Protein of unknown function (DUF1298) EFI48_RS11065 PF00106 short chain dehydrogenase EFI48_RS11070 PF01674 Lipase (class 2) EFI48_RS11075 PF07130 YebG protein EFI48_RS11110 PF13654 AAA domain EFI48_RS11110 PF05362 Lon protease (S16) C-terminal proteolytic domain EFI48_RS11115 PF07977 FabA-like domain EFI48_RS11120 PF04957 Ribosome modulation factor EFI48_RS11125 PF12848 ABC transporter EFI48_RS11125 PF16326 ABC transporter C-terminal domain EFI48_RS11125 PF00005 ABC transporter EFI48_RS11135 PF10672 S-adenosylmethionine-dependent methyltransferase EFI48_RS11135 PF02926 THUMP domain EFI48_RS11135 PF01170 Putative RNA methylase family UPF0020 EFI48_RS11140 PF00444 Ribosomal protein L36 EFI48_RS11145 PF01197 Ribosomal protein L31 EFI48_RS11155 PF07126 Cell-division protein ZapC EFI48_RS11160 PF01180 Dihydroorotate dehydrogenase EFI48_RS11165 PF05088 Bacterial NAD-glutamate dehydrogenase EFI48_RS11175 PF11940 Domain of unknown function (DUF3458) Ig-like fold EFI48_RS11175 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EFI48_RS11175 PF01433 Peptidase family M1 domain EFI48_RS11180 PF11818 C-terminal domain of tail specific protease (DUF3340) EFI48_RS11180 PF17804 Tail specific protease N-terminal domain EFI48_RS11180 PF03572 Peptidase family S41 EFI48_RS11180 PF00595 PDZ domain EFI48_RS11185 PF17516 ProQ C-terminal domain EFI48_RS11185 PF04352 ProQ/FINO family EFI48_RS11190 PF13185 GAF domain EFI48_RS11200 PF00115 Cytochrome C and Quinol oxidase polypeptide I EFI48_RS11215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EFI48_RS11215 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EFI48_RS11225 PF00403 Heavy-metal-associated domain EFI48_RS11240 PF00027 Cyclic nucleotide-binding domain EFI48_RS11240 PF13545 Crp-like helix-turn-helix domain EFI48_RS11245 PF00582 Universal stress protein family EFI48_RS11250 PF01171 PP-loop family EFI48_RS11265 PF08402 TOBE domain EFI48_RS11265 PF00005 ABC transporter EFI48_RS11270 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS11275 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS11295 PF02798 Glutathione S-transferase, N-terminal domain EFI48_RS11295 PF00043 Glutathione S-transferase, C-terminal domain EFI48_RS11300 PF05025 RbsD / FucU transport protein family EFI48_RS11305 PF00005 ABC transporter EFI48_RS11310 PF02653 Branched-chain amino acid transport system / permease component EFI48_RS11315 PF13407 Periplasmic binding protein domain EFI48_RS11320 PF00294 pfkB family carbohydrate kinase EFI48_RS11325 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS11330 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS11330 PF00563 EAL domain EFI48_RS11330 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS11340 PF02146 Sir2 family EFI48_RS11355 PF00072 Response regulator receiver domain EFI48_RS11355 PF09456 RcsC Alpha-Beta-Loop (ABL) EFI48_RS11355 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS11355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS11360 PF00216 Bacterial DNA-binding protein EFI48_RS11365 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EFI48_RS11365 PF03147 Ferredoxin-fold anticodon binding domain EFI48_RS11365 PF03484 tRNA synthetase B5 domain EFI48_RS11365 PF03483 B3/4 domain EFI48_RS11365 PF01588 Putative tRNA binding domain EFI48_RS11370 PF01409 tRNA synthetases class II core domain (F) EFI48_RS11370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EFI48_RS11375 PF00453 Ribosomal protein L20 EFI48_RS11380 PF01632 Ribosomal protein L35 EFI48_RS11385 PF05198 Translation initiation factor IF-3, N-terminal domain EFI48_RS11385 PF00707 Translation initiation factor IF-3, C-terminal domain EFI48_RS11390 PF03129 Anticodon binding domain EFI48_RS11390 PF02824 TGS domain EFI48_RS11390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EFI48_RS11390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EFI48_RS11400 PF04055 Radical SAM superfamily EFI48_RS11405 PF00128 Alpha amylase, catalytic domain EFI48_RS11410 PF03989 DNA gyrase C-terminal domain, beta-propeller EFI48_RS11410 PF00521 DNA gyrase/topoisomerase IV, subunit A EFI48_RS11420 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS11425 PF02867 Ribonucleotide reductase, barrel domain EFI48_RS11425 PF00317 Ribonucleotide reductase, all-alpha domain EFI48_RS11425 PF03477 ATP cone domain EFI48_RS11430 PF00268 Ribonucleotide reductase, small chain EFI48_RS11435 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS11440 PF06725 3D domain EFI48_RS11440 PF03562 MltA specific insert domain EFI48_RS11445 PF06945 Protein of unknown function (DUF1289) EFI48_RS11450 PF01384 Phosphate transporter family EFI48_RS11455 PF00692 dUTPase EFI48_RS11460 PF00485 Phosphoribulokinase / Uridine kinase family EFI48_RS11465 PF10609 NUBPL iron-transfer P-loop NTPase EFI48_RS11470 PF08264 Anticodon-binding domain of tRNA EFI48_RS11470 PF01588 Putative tRNA binding domain EFI48_RS11470 PF09334 tRNA synthetases class I (M) EFI48_RS11480 PF00708 Acylphosphatase EFI48_RS11485 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS11485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS11485 PF00672 HAMP domain EFI48_RS11490 PF00669 Bacterial flagellin N-terminal helical region EFI48_RS11490 PF00700 Bacterial flagellin C-terminal helical region EFI48_RS11490 PF07196 Flagellin hook IN motif EFI48_RS11495 PF17785 PUA-like domain EFI48_RS11495 PF10672 S-adenosylmethionine-dependent methyltransferase EFI48_RS11510 PF00586 AIR synthase related protein, N-terminal domain EFI48_RS11510 PF02769 AIR synthase related protein, C-terminal domain EFI48_RS11520 PF00753 Metallo-beta-lactamase superfamily EFI48_RS11530 PF00570 HRDC domain EFI48_RS11530 PF01612 3'-5' exonuclease EFI48_RS11535 PF13193 AMP-binding enzyme C-terminal domain EFI48_RS11535 PF00501 AMP-binding enzyme EFI48_RS11540 PF12697 Alpha/beta hydrolase family EFI48_RS11550 PF00814 Glycoprotease family EFI48_RS11555 PF13307 Helicase C-terminal domain EFI48_RS11555 PF04851 Type III restriction enzyme, res subunit EFI48_RS11565 PF08029 HisG, C-terminal domain EFI48_RS11565 PF01634 ATP phosphoribosyltransferase EFI48_RS11570 PF00815 Histidinol dehydrogenase EFI48_RS11575 PF00155 Aminotransferase class I and II EFI48_RS11580 PF08645 Polynucleotide kinase 3 phosphatase EFI48_RS11580 PF00475 Imidazoleglycerol-phosphate dehydratase EFI48_RS11585 PF00117 Glutamine amidotransferase class-I EFI48_RS11590 PF00977 Histidine biosynthesis protein EFI48_RS11595 PF00977 Histidine biosynthesis protein EFI48_RS11600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EFI48_RS11600 PF01502 Phosphoribosyl-AMP cyclohydrolase EFI48_RS11610 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS11610 PF08448 PAS fold EFI48_RS11615 PF00501 AMP-binding enzyme EFI48_RS11615 PF13193 AMP-binding enzyme C-terminal domain EFI48_RS11625 PF05433 Glycine zipper 2TM domain EFI48_RS11630 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS11630 PF01799 [2Fe-2S] binding domain EFI48_RS11635 PF00941 FAD binding domain in molybdopterin dehydrogenase EFI48_RS11635 PF03450 CO dehydrogenase flavoprotein C-terminal domain EFI48_RS11640 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EFI48_RS11640 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EFI48_RS11645 PF00860 Permease family EFI48_RS11650 PF01979 Amidohydrolase family EFI48_RS11655 PF00860 Permease family EFI48_RS11660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EFI48_RS11660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EFI48_RS11660 PF01799 [2Fe-2S] binding domain EFI48_RS11665 PF00941 FAD binding domain in molybdopterin dehydrogenase EFI48_RS11670 PF01979 Amidohydrolase family EFI48_RS11675 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS11675 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EFI48_RS11680 PF12804 MobA-like NTP transferase domain EFI48_RS11690 PF13478 XdhC Rossmann domain EFI48_RS11690 PF02625 XdhC and CoxI family EFI48_RS11695 PF01699 Sodium/calcium exchanger protein EFI48_RS11700 PF00892 EamA-like transporter family EFI48_RS11705 PF00696 Amino acid kinase family EFI48_RS11710 PF01979 Amidohydrolase family EFI48_RS11715 PF01546 Peptidase family M20/M25/M40 EFI48_RS11715 PF07687 Peptidase dimerisation domain EFI48_RS11720 PF00291 Pyridoxal-phosphate dependent enzyme EFI48_RS11725 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EFI48_RS11725 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EFI48_RS11760 PF01327 Polypeptide deformylase EFI48_RS11770 PF03330 Lytic transglycolase EFI48_RS11770 PF05036 Sporulation related domain EFI48_RS11775 PF04310 MukB N-terminal EFI48_RS11775 PF16330 MukB hinge domain EFI48_RS11780 PF04288 MukE-like family EFI48_RS11785 PF03882 MukF winged-helix domain EFI48_RS11785 PF17193 MukF C-terminal domain EFI48_RS11785 PF17192 MukF middle domain EFI48_RS11790 PF13847 Methyltransferase domain EFI48_RS11795 PF02698 DUF218 domain EFI48_RS11800 PF00121 Triosephosphate isomerase EFI48_RS11805 PF00365 Phosphofructokinase EFI48_RS11810 PF00375 Sodium:dicarboxylate symporter family EFI48_RS11815 PF06865 Pyrimidine/purine nucleoside phosphorylase EFI48_RS11820 PF03313 Serine dehydratase alpha chain EFI48_RS11820 PF03315 Serine dehydratase beta chain EFI48_RS11830 PF03315 Serine dehydratase beta chain EFI48_RS11830 PF03313 Serine dehydratase alpha chain EFI48_RS11835 PF05166 YcgL domain EFI48_RS11840 PF03775 Septum formation inhibitor MinC, C-terminal domain EFI48_RS11840 PF05209 Septum formation inhibitor MinC, N-terminal domain EFI48_RS11845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EFI48_RS11850 PF03776 Septum formation topological specificity factor MinE EFI48_RS11855 PF04269 Protein of unknown function, DUF440 EFI48_RS11860 PF00912 Transglycosylase EFI48_RS11865 PF04269 Protein of unknown function, DUF440 EFI48_RS11875 PF17783 CvfB-like winged helix domain EFI48_RS11875 PF13509 S1 domain EFI48_RS11905 PF00892 EamA-like transporter family EFI48_RS11910 PF01370 NAD dependent epimerase/dehydratase family EFI48_RS11910 PF02222 ATP-grasp domain EFI48_RS11915 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS11925 PF00677 Lumazine binding domain EFI48_RS11935 PF06786 Uncharacterised protein family (UPF0253) EFI48_RS11940 PF01554 MatE EFI48_RS11970 PF00158 Sigma-54 interaction domain EFI48_RS11970 PF02954 Bacterial regulatory protein, Fis family EFI48_RS11970 PF13188 PAS domain EFI48_RS11985 PF07152 YaeQ protein EFI48_RS11995 PF07840 FadR C-terminal domain EFI48_RS11995 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS12000 PF06450 Bacterial Na+/H+ antiporter B (NhaB) EFI48_RS12005 PF02600 Disulfide bond formation protein DsbB EFI48_RS12010 PF09335 SNARE associated Golgi protein EFI48_RS12020 PF04851 Type III restriction enzyme, res subunit EFI48_RS12020 PF02151 UvrB/uvrC motif EFI48_RS12020 PF12344 Ultra-violet resistance protein B EFI48_RS12020 PF00271 Helicase conserved C-terminal domain EFI48_RS12020 PF17757 UvrB interaction domain EFI48_RS12035 PF06826 Predicted Permease Membrane Region EFI48_RS12035 PF02080 TrkA-C domain EFI48_RS12040 PF02801 Beta-ketoacyl synthase, C-terminal domain EFI48_RS12040 PF00109 Beta-ketoacyl synthase, N-terminal domain EFI48_RS12045 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EFI48_RS12045 PF01266 FAD dependent oxidoreductase EFI48_RS12060 PF03606 C4-dicarboxylate anaerobic carrier EFI48_RS12075 PF01863 Protein of unknown function DUF45 EFI48_RS12090 PF00136 DNA polymerase family B EFI48_RS12090 PF03104 DNA polymerase family B, exonuclease domain EFI48_RS12100 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS12100 PF17151 Periplasmic sensor domain EFI48_RS12115 PF03279 Bacterial lipid A biosynthesis acyltransferase EFI48_RS12120 PF03279 Bacterial lipid A biosynthesis acyltransferase EFI48_RS12130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS12130 PF03466 LysR substrate binding domain EFI48_RS12135 PF01261 Xylose isomerase-like TIM barrel EFI48_RS12140 PF02575 YbaB/EbfC DNA-binding family EFI48_RS12145 PF12170 DNA polymerase III tau subunit V interacting with alpha EFI48_RS12145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EFI48_RS12145 PF12169 DNA polymerase III subunits gamma and tau domain III EFI48_RS12150 PF00156 Phosphoribosyl transferase domain EFI48_RS12155 PF04304 Protein of unknown function (DUF454) EFI48_RS12160 PF01207 Dihydrouridine synthase (Dus) EFI48_RS12175 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS12180 PF00883 Cytosol aminopeptidase family, catalytic domain EFI48_RS12180 PF02789 Cytosol aminopeptidase family, N-terminal domain EFI48_RS12220 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EFI48_RS12220 PF00128 Alpha amylase, catalytic domain EFI48_RS12230 PF11398 Protein of unknown function (DUF2813) EFI48_RS12235 PF14525 AraC-binding-like domain EFI48_RS12235 PF12833 Helix-turn-helix domain EFI48_RS12245 PF03466 LysR substrate binding domain EFI48_RS12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS12250 PF01925 Sulfite exporter TauE/SafE EFI48_RS12255 PF03942 DTW domain EFI48_RS12260 PF00480 ROK family EFI48_RS12260 PF01047 MarR family EFI48_RS12265 PF17200 Single Cache domain 2 EFI48_RS12265 PF00672 HAMP domain EFI48_RS12265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS12270 PF02810 SEC-C motif EFI48_RS12275 PF04324 BFD-like [2Fe-2S] binding domain EFI48_RS12275 PF01266 FAD dependent oxidoreductase EFI48_RS12280 PF00890 FAD binding domain EFI48_RS12285 PF02754 Cysteine-rich domain EFI48_RS12285 PF13183 4Fe-4S dicluster domain EFI48_RS12295 PF02335 Cytochrome c552 EFI48_RS12300 PF13435 Cytochrome c554 and c-prime EFI48_RS12300 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) EFI48_RS12305 PF13247 4Fe-4S dicluster domain EFI48_RS12305 PF00037 4Fe-4S binding domain EFI48_RS12310 PF03916 Polysulphide reductase, NrfD EFI48_RS12315 PF01578 Cytochrome C assembly protein EFI48_RS12315 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EFI48_RS12320 PF08534 Redoxin EFI48_RS12325 PF03918 Cytochrome C biogenesis protein EFI48_RS12335 PF00202 Aminotransferase class-III EFI48_RS12340 PF00266 Aminotransferase class-V EFI48_RS12345 PF07702 UTRA domain EFI48_RS12345 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS12355 PF00005 ABC transporter EFI48_RS12360 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS12365 PF01266 FAD dependent oxidoreductase EFI48_RS12375 PF06167 Glucose-regulated metallo-peptidase M90 EFI48_RS12385 PF01235 Sodium:alanine symporter family EFI48_RS12420 PF00378 Enoyl-CoA hydratase/isomerase EFI48_RS12435 PF04341 Protein of unknown function, DUF485 EFI48_RS12440 PF00474 Sodium:solute symporter family EFI48_RS12445 PF12848 ABC transporter EFI48_RS12445 PF00005 ABC transporter EFI48_RS12450 PF13145 PPIC-type PPIASE domain EFI48_RS12455 PF00216 Bacterial DNA-binding protein EFI48_RS12460 PF02190 ATP-dependent protease La (LON) substrate-binding domain EFI48_RS12460 PF05362 Lon protease (S16) C-terminal proteolytic domain EFI48_RS12460 PF00004 ATPase family associated with various cellular activities (AAA) EFI48_RS12465 PF07724 AAA domain (Cdc48 subfamily) EFI48_RS12465 PF10431 C-terminal, D2-small domain, of ClpB protein EFI48_RS12465 PF06689 ClpX C4-type zinc finger EFI48_RS12470 PF00574 Clp protease EFI48_RS12475 PF05697 Bacterial trigger factor protein (TF) EFI48_RS12475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EFI48_RS12475 PF05698 Bacterial trigger factor protein (TF) C-terminus EFI48_RS12495 PF12704 MacB-like periplasmic core domain EFI48_RS12495 PF02687 FtsX-like permease family EFI48_RS12500 PF00005 ABC transporter EFI48_RS12505 PF12704 MacB-like periplasmic core domain EFI48_RS12505 PF02687 FtsX-like permease family EFI48_RS12515 PF17757 UvrB interaction domain EFI48_RS12515 PF03461 TRCF domain EFI48_RS12515 PF00271 Helicase conserved C-terminal domain EFI48_RS12515 PF00270 DEAD/DEAH box helicase EFI48_RS12515 PF02559 CarD-like/TRCF domain EFI48_RS12520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EFI48_RS12525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS12530 PF00892 EamA-like transporter family EFI48_RS12540 PF00300 Histidine phosphatase superfamily (branch 1) EFI48_RS12545 PF05193 Peptidase M16 inactive domain EFI48_RS12545 PF16187 Middle or third domain of peptidase_M16 EFI48_RS12545 PF00675 Insulinase (Peptidase family M16) EFI48_RS12550 PF05724 Thiopurine S-methyltransferase (TPMT) EFI48_RS12565 PF12833 Helix-turn-helix domain EFI48_RS12565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EFI48_RS12565 PF02805 Metal binding domain of Ada EFI48_RS12565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EFI48_RS12585 PF00117 Glutamine amidotransferase class-I EFI48_RS12585 PF02540 NAD synthase EFI48_RS12585 PF00958 GMP synthase C terminal domain EFI48_RS12590 PF00571 CBS domain EFI48_RS12590 PF00478 IMP dehydrogenase / GMP reductase domain EFI48_RS12595 PF00313 'Cold-shock' DNA-binding domain EFI48_RS12600 PF02601 Exonuclease VII, large subunit EFI48_RS12600 PF13742 OB-fold nucleic acid binding domain EFI48_RS12605 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS12605 PF07702 UTRA domain EFI48_RS12610 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EFI48_RS12610 PF02378 Phosphotransferase system, EIIC EFI48_RS12610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EFI48_RS12615 PF01074 Glycosyl hydrolases family 38 N-terminal domain EFI48_RS12615 PF09261 Alpha mannosidase middle domain EFI48_RS12615 PF07748 Glycosyl hydrolases family 38 C-terminal domain EFI48_RS12620 PF01820 D-ala D-ala ligase N-terminus EFI48_RS12620 PF07478 D-ala D-ala ligase C-terminus EFI48_RS12630 PF00255 Glutathione peroxidase EFI48_RS12635 PF00270 DEAD/DEAH box helicase EFI48_RS12635 PF00271 Helicase conserved C-terminal domain EFI48_RS12640 PF04055 Radical SAM superfamily EFI48_RS12645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS12645 PF00672 HAMP domain EFI48_RS12650 PF00793 DAHP synthetase I family EFI48_RS12655 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EFI48_RS12660 PF00266 Aminotransferase class-V EFI48_RS12665 PF01012 Electron transfer flavoprotein domain EFI48_RS12665 PF00766 Electron transfer flavoprotein FAD-binding domain EFI48_RS12670 PF01012 Electron transfer flavoprotein domain EFI48_RS12690 PF01544 CorA-like Mg2+ transporter protein EFI48_RS12695 PF11143 Protein of unknown function (DUF2919) EFI48_RS12705 PF07273 Protein of unknown function (DUF1439) EFI48_RS12715 PF00483 Nucleotidyl transferase EFI48_RS12720 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS12720 PF00563 EAL domain EFI48_RS12720 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS12735 PF00294 pfkB family carbohydrate kinase EFI48_RS12745 PF00762 Ferrochelatase EFI48_RS12750 PF05191 Adenylate kinase, active site lid EFI48_RS12755 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EFI48_RS12760 PF00156 Phosphoribosyl transferase domain EFI48_RS12765 PF02674 Colicin V production protein EFI48_RS12770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EFI48_RS12770 PF02403 Seryl-tRNA synthetase N-terminal domain EFI48_RS12775 PF16193 AAA C-terminal domain EFI48_RS12775 PF00004 ATPase family associated with various cellular activities (AAA) EFI48_RS12775 PF12002 MgsA AAA+ ATPase C terminal EFI48_RS12780 PF03548 Outer membrane lipoprotein carrier protein LolA EFI48_RS12785 PF09397 Ftsk gamma domain EFI48_RS12785 PF17854 FtsK alpha domain EFI48_RS12785 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EFI48_RS12785 PF01580 FtsK/SpoIIIE family EFI48_RS12790 PF01037 Lrp/AsnC ligand binding domain EFI48_RS12795 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EFI48_RS12795 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EFI48_RS12800 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS12805 PF17158 Membrane-associated sensor, integral membrane domain EFI48_RS12805 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS12810 PF05433 Glycine zipper 2TM domain EFI48_RS12815 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EFI48_RS12820 PF04377 Arginine-tRNA-protein transferase, C terminus EFI48_RS12820 PF04376 Arginine-tRNA-protein transferase, N terminus EFI48_RS12825 PF01176 Translation initiation factor 1A / IF-1 EFI48_RS12830 PF07724 AAA domain (Cdc48 subfamily) EFI48_RS12830 PF00004 ATPase family associated with various cellular activities (AAA) EFI48_RS12830 PF17871 AAA lid domain EFI48_RS12830 PF02861 Clp amino terminal domain, pathogenicity island component EFI48_RS12830 PF10431 C-terminal, D2-small domain, of ClpB protein EFI48_RS12835 PF02617 ATP-dependent Clp protease adaptor protein ClpS EFI48_RS12840 PF00313 'Cold-shock' DNA-binding domain EFI48_RS12845 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EFI48_RS12845 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EFI48_RS12865 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS12865 PF00072 Response regulator receiver domain EFI48_RS12870 PF00672 HAMP domain EFI48_RS12870 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS12880 PF09924 Uncharacterised conserved protein (DUF2156) EFI48_RS12880 PF03706 Lysylphosphatidylglycerol synthase TM region EFI48_RS12900 PF09722 Protein of unknown function (DUF2384) EFI48_RS12955 PF03432 Relaxase/Mobilisation nuclease domain EFI48_RS12965 PF02899 Phage integrase, N-terminal SAM-like domain EFI48_RS12965 PF00589 Phage integrase family EFI48_RS12980 PF00916 Sulfate permease family EFI48_RS12980 PF01740 STAS domain EFI48_RS13005 PF00270 DEAD/DEAH box helicase EFI48_RS13005 PF00271 Helicase conserved C-terminal domain EFI48_RS13010 PF03350 Uncharacterized protein family, UPF0114 EFI48_RS13025 PF03239 Iron permease FTR1 family EFI48_RS13030 PF01593 Flavin containing amine oxidoreductase EFI48_RS13045 PF07690 Major Facilitator Superfamily EFI48_RS13050 PF03600 Citrate transporter EFI48_RS13060 PF00005 ABC transporter EFI48_RS13065 PF02687 FtsX-like permease family EFI48_RS13065 PF12704 MacB-like periplasmic core domain EFI48_RS13080 PF00561 alpha/beta hydrolase fold EFI48_RS13100 PF01625 Peptide methionine sulfoxide reductase EFI48_RS13105 PF00696 Amino acid kinase family EFI48_RS13105 PF00583 Acetyltransferase (GNAT) family EFI48_RS13110 PF01842 ACT domain EFI48_RS13110 PF00696 Amino acid kinase family EFI48_RS13120 PF00884 Sulfatase EFI48_RS13125 PF02016 LD-carboxypeptidase N-terminal domain EFI48_RS13125 PF17676 LD-carboxypeptidase C-terminal domain EFI48_RS13130 PF01734 Patatin-like phospholipase EFI48_RS13135 PF17179 4Fe-4S dicluster domain EFI48_RS13140 PF00175 Oxidoreductase NAD-binding domain EFI48_RS13140 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B EFI48_RS13145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EFI48_RS13145 PF13187 4Fe-4S dicluster domain EFI48_RS13145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EFI48_RS13150 PF10414 Sirohaem synthase dimerisation region EFI48_RS13150 PF14824 Sirohaem biosynthesis protein central EFI48_RS13150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EFI48_RS13160 PF01906 Putative heavy-metal-binding EFI48_RS13165 PF05036 Sporulation related domain EFI48_RS13170 PF02875 Mur ligase family, glutamate ligase domain EFI48_RS13170 PF08245 Mur ligase middle domain EFI48_RS13175 PF01039 Carboxyl transferase domain EFI48_RS13175 PF17848 Acetyl-coA carboxylase zinc finger domain EFI48_RS13180 PF01416 tRNA pseudouridine synthase EFI48_RS13190 PF01118 Semialdehyde dehydrogenase, NAD binding domain EFI48_RS13190 PF02774 Semialdehyde dehydrogenase, dimerisation domain EFI48_RS13195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EFI48_RS13195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EFI48_RS13195 PF11890 Domain of unknown function (DUF3410) EFI48_RS13200 PF01569 PAP2 superfamily EFI48_RS13205 PF00929 Exonuclease EFI48_RS13210 PF13726 Na+-H+ antiporter family EFI48_RS13210 PF03553 Na+/H+ antiporter family EFI48_RS13215 PF13188 PAS domain EFI48_RS13215 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS13215 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS13215 PF00563 EAL domain EFI48_RS13225 PF00271 Helicase conserved C-terminal domain EFI48_RS13225 PF03880 DbpA RNA binding domain EFI48_RS13225 PF00270 DEAD/DEAH box helicase EFI48_RS13230 PF03061 Thioesterase superfamily EFI48_RS13240 PF13183 4Fe-4S dicluster domain EFI48_RS13240 PF01565 FAD binding domain EFI48_RS13240 PF02913 FAD linked oxidases, C-terminal domain EFI48_RS13250 PF03741 Integral membrane protein TerC family EFI48_RS13250 PF03471 Transporter associated domain EFI48_RS13255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EFI48_RS13260 PF08240 Alcohol dehydrogenase GroES-like domain EFI48_RS13260 PF00107 Zinc-binding dehydrogenase EFI48_RS13265 PF00962 Adenosine/AMP deaminase EFI48_RS13270 PF13344 Haloacid dehalogenase-like hydrolase EFI48_RS13275 PF02254 TrkA-N domain EFI48_RS13275 PF00999 Sodium/hydrogen exchanger family EFI48_RS13285 PF13537 Glutamine amidotransferase domain EFI48_RS13285 PF00733 Asparagine synthase EFI48_RS13310 PF01066 CDP-alcohol phosphatidyltransferase EFI48_RS13315 PF08459 UvrC Helix-hairpin-helix N-terminal EFI48_RS13315 PF01541 GIY-YIG catalytic domain EFI48_RS13315 PF02151 UvrB/uvrC motif EFI48_RS13320 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS13320 PF00072 Response regulator receiver domain EFI48_RS13325 PF02348 Cytidylyltransferase EFI48_RS13330 PF03966 Trm112p-like protein EFI48_RS13335 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EFI48_RS13340 PF00664 ABC transporter transmembrane region EFI48_RS13340 PF00005 ABC transporter EFI48_RS13345 PF00753 Metallo-beta-lactamase superfamily EFI48_RS13345 PF03772 Competence protein EFI48_RS13360 PF00155 Aminotransferase class I and II EFI48_RS13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS13370 PF03466 LysR substrate binding domain EFI48_RS13375 PF04219 Protein of unknown function, DUF EFI48_RS13380 PF03974 Ecotin EFI48_RS13385 PF03009 Glycerophosphoryl diester phosphodiesterase family EFI48_RS13390 PF01266 FAD dependent oxidoreductase EFI48_RS13390 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EFI48_RS13395 PF08220 DeoR-like helix-turn-helix domain EFI48_RS13395 PF00455 DeoR C terminal sensor domain EFI48_RS13400 PF07690 Major Facilitator Superfamily EFI48_RS13405 PF00230 Major intrinsic protein EFI48_RS13410 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EFI48_RS13410 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EFI48_RS13415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS13415 PF00672 HAMP domain EFI48_RS13415 PF02743 Cache domain EFI48_RS13425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS13425 PF03466 LysR substrate binding domain EFI48_RS13445 PF00248 Aldo/keto reductase family EFI48_RS13455 PF07690 Major Facilitator Superfamily EFI48_RS13460 PF02525 Flavodoxin-like fold EFI48_RS13475 PF05114 Protein of unknown function (DUF692) EFI48_RS13495 PF02322 Cytochrome bd terminal oxidase subunit II EFI48_RS13500 PF01654 Cytochrome bd terminal oxidase subunit I EFI48_RS13505 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS13505 PF00155 Aminotransferase class I and II EFI48_RS13510 PF04391 Protein of unknown function (DUF533) EFI48_RS13515 PF03061 Thioesterase superfamily EFI48_RS13520 PF10689 Protein of unknown function (DUF2496) EFI48_RS13525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS13525 PF03466 LysR substrate binding domain EFI48_RS13530 PF07690 Major Facilitator Superfamily EFI48_RS13535 PF00849 RNA pseudouridylate synthase EFI48_RS13535 PF01479 S4 domain EFI48_RS13545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EFI48_RS13555 PF01844 HNH endonuclease EFI48_RS13560 PF02508 Rnf-Nqr subunit, membrane protein EFI48_RS13565 PF04060 Putative Fe-S cluster EFI48_RS13570 PF12838 4Fe-4S dicluster domain EFI48_RS13570 PF10531 SLBB domain EFI48_RS13570 PF13375 RnfC Barrel sandwich hybrid domain EFI48_RS13570 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EFI48_RS13575 PF03116 NQR2, RnfD, RnfE family EFI48_RS13580 PF04205 FMN-binding domain EFI48_RS13585 PF02508 Rnf-Nqr subunit, membrane protein EFI48_RS13590 PF10576 Iron-sulfur binding domain of endonuclease III EFI48_RS13590 PF00730 HhH-GPD superfamily base excision DNA repair protein EFI48_RS13590 PF00633 Helix-hairpin-helix motif EFI48_RS13595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EFI48_RS13600 PF18393 MotY N-terminal domain EFI48_RS13600 PF00691 OmpA family EFI48_RS13630 PF13609 Gram-negative porin EFI48_RS13635 PF06733 DEAD_2 EFI48_RS13635 PF13307 Helicase C-terminal domain EFI48_RS13645 PF00850 Histone deacetylase domain EFI48_RS13650 PF01926 50S ribosome-binding GTPase EFI48_RS13655 PF00245 Alkaline phosphatase EFI48_RS13660 PF00245 Alkaline phosphatase EFI48_RS13675 PF14760 Rnk N-terminus EFI48_RS13675 PF01272 Transcription elongation factor, GreA/GreB, C-term EFI48_RS13680 PF00072 Response regulator receiver domain EFI48_RS13680 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS13685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS13685 PF07730 Histidine kinase EFI48_RS13685 PF05231 MASE1 EFI48_RS13690 PF07690 Major Facilitator Superfamily EFI48_RS13695 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS13695 PF08448 PAS fold EFI48_RS13700 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS13705 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS13710 PF00005 ABC transporter EFI48_RS13720 PF04116 Fatty acid hydroxylase superfamily EFI48_RS13725 PF13520 Amino acid permease EFI48_RS13730 PF02310 B12 binding domain EFI48_RS13730 PF02574 Homocysteine S-methyltransferase EFI48_RS13730 PF02965 Vitamin B12 dependent methionine synthase, activation domain EFI48_RS13730 PF02607 B12 binding domain EFI48_RS13730 PF00809 Pterin binding enzyme EFI48_RS13745 PF03471 Transporter associated domain EFI48_RS13745 PF01595 Cyclin M transmembrane N-terminal domain EFI48_RS13745 PF00571 CBS domain EFI48_RS13750 PF01895 PhoU domain EFI48_RS13755 PF00005 ABC transporter EFI48_RS13760 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS13765 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS13770 PF14437 MafB19-like deaminase EFI48_RS13780 PF01274 Malate synthase EFI48_RS13785 PF00463 Isocitrate lyase family EFI48_RS13790 PF00308 Bacterial dnaA protein EFI48_RS13805 PF00586 AIR synthase related protein, N-terminal domain EFI48_RS13805 PF02769 AIR synthase related protein, C-terminal domain EFI48_RS13810 PF00551 Formyl transferase EFI48_RS13815 PF01784 NIF3 (NGG1p interacting factor 3) EFI48_RS13820 PF00158 Sigma-54 interaction domain EFI48_RS13820 PF02954 Bacterial regulatory protein, Fis family EFI48_RS13820 PF00072 Response regulator receiver domain EFI48_RS13825 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS13825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS13825 PF13188 PAS domain EFI48_RS13830 PF00158 Sigma-54 interaction domain EFI48_RS13830 PF06490 Flagellar regulatory protein FleQ EFI48_RS13830 PF02954 Bacterial regulatory protein, Fis family EFI48_RS13840 PF01842 ACT domain EFI48_RS13845 PF17941 Polyphosphate kinase C-terminal domain 1 EFI48_RS13845 PF13090 Polyphosphate kinase C-terminal domain 2 EFI48_RS13845 PF02503 Polyphosphate kinase middle domain EFI48_RS13845 PF13089 Polyphosphate kinase N-terminal domain EFI48_RS13850 PF02541 Ppx/GppA phosphatase family EFI48_RS13855 PF01769 Divalent cation transporter EFI48_RS13855 PF00571 CBS domain EFI48_RS13855 PF03448 MgtE intracellular N domain EFI48_RS13860 PF00669 Bacterial flagellin N-terminal helical region EFI48_RS13865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EFI48_RS13865 PF07196 Flagellin hook IN motif EFI48_RS13870 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EFI48_RS13870 PF10135 Rod binding protein EFI48_RS13875 PF02119 Flagellar P-ring protein EFI48_RS13880 PF02107 Flagellar L-ring protein EFI48_RS13885 PF00460 Flagella basal body rod protein EFI48_RS13885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EFI48_RS13890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EFI48_RS13890 PF00460 Flagella basal body rod protein EFI48_RS13895 PF00460 Flagella basal body rod protein EFI48_RS13895 PF07559 Flagellar basal body protein FlaE EFI48_RS13895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EFI48_RS13905 PF00460 Flagella basal body rod protein EFI48_RS13905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EFI48_RS13910 PF00460 Flagella basal body rod protein EFI48_RS13915 PF03705 CheR methyltransferase, all-alpha domain EFI48_RS13915 PF01739 CheR methyltransferase, SAM binding domain EFI48_RS13920 PF01584 CheW-like domain EFI48_RS13920 PF00072 Response regulator receiver domain EFI48_RS13925 PF13144 Chaperone for flagella basal body P-ring formation EFI48_RS13940 PF12850 Calcineurin-like phosphoesterase superfamily domain EFI48_RS13945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS13955 PF00849 RNA pseudouridylate synthase EFI48_RS13955 PF01479 S4 domain EFI48_RS13960 PF01966 HD domain EFI48_RS13960 PF11871 Domain of unknown function (DUF3391) EFI48_RS13970 PF00923 Transaldolase/Fructose-6-phosphate aldolase EFI48_RS13975 PF04055 Radical SAM superfamily EFI48_RS13980 PF02901 Pyruvate formate lyase-like EFI48_RS13980 PF01228 Glycine radical EFI48_RS13985 PF00455 DeoR C terminal sensor domain EFI48_RS13985 PF08220 DeoR-like helix-turn-helix domain EFI48_RS13990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS14015 PF00313 'Cold-shock' DNA-binding domain EFI48_RS14020 PF02817 e3 binding domain EFI48_RS14020 PF00364 Biotin-requiring enzyme EFI48_RS14020 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EFI48_RS14025 PF02779 Transketolase, pyrimidine binding domain EFI48_RS14025 PF02780 Transketolase, C-terminal domain EFI48_RS14030 PF00676 Dehydrogenase E1 component EFI48_RS14040 PF00501 AMP-binding enzyme EFI48_RS14040 PF00975 Thioesterase domain EFI48_RS14040 PF00550 Phosphopantetheine attachment site EFI48_RS14040 PF00668 Condensation domain EFI48_RS14050 PF00550 Phosphopantetheine attachment site EFI48_RS14050 PF00857 Isochorismatase family EFI48_RS14055 PF13193 AMP-binding enzyme C-terminal domain EFI48_RS14055 PF00501 AMP-binding enzyme EFI48_RS14060 PF00425 chorismate binding enzyme EFI48_RS14065 PF00593 TonB dependent receptor EFI48_RS14065 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS14070 PF00793 DAHP synthetase I family EFI48_RS14075 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS14080 PF14718 Soluble lytic murein transglycosylase L domain EFI48_RS14080 PF01464 Transglycosylase SLT domain EFI48_RS14085 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS14085 PF00563 EAL domain EFI48_RS14085 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS14090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EFI48_RS14110 PF04357 TamB, inner membrane protein subunit of TAM complex EFI48_RS14115 PF07244 Surface antigen variable number repeat EFI48_RS14115 PF01103 Surface antigen EFI48_RS14115 PF17243 POTRA domain TamA domain 1 EFI48_RS14135 PF02627 Carboxymuconolactone decarboxylase family EFI48_RS14140 PF00403 Heavy-metal-associated domain EFI48_RS14140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EFI48_RS14140 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS14145 PF13416 Bacterial extracellular solute-binding protein EFI48_RS14155 PF00005 ABC transporter EFI48_RS14160 PF01066 CDP-alcohol phosphatidyltransferase EFI48_RS14165 PF13406 Transglycosylase SLT domain EFI48_RS14170 PF01047 MarR family EFI48_RS14180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EFI48_RS14180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EFI48_RS14180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EFI48_RS14180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EFI48_RS14185 PF17206 SeqA protein N-terminal domain EFI48_RS14185 PF03925 SeqA protein C-terminal domain EFI48_RS14190 PF12697 Alpha/beta hydrolase family EFI48_RS14200 PF01402 Ribbon-helix-helix protein, copG family EFI48_RS14205 PF00258 Flavodoxin EFI48_RS14215 PF01475 Ferric uptake regulator family EFI48_RS14220 PF00749 tRNA synthetases class I (E and Q), catalytic domain EFI48_RS14220 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EFI48_RS14225 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain EFI48_RS14225 PF02838 Glycosyl hydrolase family 20, domain 2 EFI48_RS14225 PF00728 Glycosyl hydrolase family 20, catalytic domain EFI48_RS14225 PF03173 Putative carbohydrate binding domain EFI48_RS14230 PF00367 phosphotransferase system, EIIB EFI48_RS14230 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EFI48_RS14230 PF02378 Phosphotransferase system, EIIC EFI48_RS14235 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EFI48_RS14240 PF01979 Amidohydrolase family EFI48_RS14245 PF00480 ROK family EFI48_RS14245 PF01047 MarR family EFI48_RS14250 PF08019 Phosphoethanolamine transferase EptA/EptB EFI48_RS14250 PF00884 Sulfatase EFI48_RS14255 PF01966 HD domain EFI48_RS14260 PF06580 Histidine kinase EFI48_RS14260 PF07694 5TMR of 5TMR-LYT EFI48_RS14265 PF00072 Response regulator receiver domain EFI48_RS14265 PF04397 LytTr DNA-binding domain EFI48_RS14270 PF02554 Carbon starvation protein CstA EFI48_RS14275 PF11742 Protein of unknown function (DUF3302) EFI48_RS14280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS14280 PF00529 HlyD membrane-fusion protein of T1SS EFI48_RS14285 PF04851 Type III restriction enzyme, res subunit EFI48_RS14285 PF00271 Helicase conserved C-terminal domain EFI48_RS14290 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family EFI48_RS14295 PF00462 Glutaredoxin EFI48_RS14300 PF03372 Endonuclease/Exonuclease/phosphatase family EFI48_RS14310 PF03061 Thioesterase superfamily EFI48_RS14315 PF01370 NAD dependent epimerase/dehydratase family EFI48_RS14320 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EFI48_RS14320 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EFI48_RS14320 PF10371 Domain of unknown function EFI48_RS14320 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EFI48_RS14320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EFI48_RS14325 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS14325 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EFI48_RS14325 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EFI48_RS14335 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS14335 PF03473 MOSC domain EFI48_RS14335 PF03473 MOSC domain EFI48_RS14335 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS14335 PF03476 MOSC N-terminal beta barrel domain EFI48_RS14335 PF03476 MOSC N-terminal beta barrel domain EFI48_RS14340 PF13426 PAS domain EFI48_RS14340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS14340 PF08447 PAS fold EFI48_RS14345 PF01435 Peptidase family M48 EFI48_RS14355 PF12697 Alpha/beta hydrolase family EFI48_RS14355 PF08241 Methyltransferase domain EFI48_RS14360 PF00155 Aminotransferase class I and II EFI48_RS14365 PF06968 Biotin and Thiamin Synthesis associated domain EFI48_RS14365 PF04055 Radical SAM superfamily EFI48_RS14370 PF00202 Aminotransferase class-III EFI48_RS14385 PF01336 OB-fold nucleic acid binding domain EFI48_RS14385 PF00152 tRNA synthetases class II (D, K and N) EFI48_RS14395 PF03605 Anaerobic c4-dicarboxylate membrane transporter EFI48_RS14405 PF01546 Peptidase family M20/M25/M40 EFI48_RS14405 PF07687 Peptidase dimerisation domain EFI48_RS14410 PF03606 C4-dicarboxylate anaerobic carrier EFI48_RS14420 PF03960 ArsC family EFI48_RS14425 PF01546 Peptidase family M20/M25/M40 EFI48_RS14425 PF07687 Peptidase dimerisation domain EFI48_RS14430 PF02557 D-alanyl-D-alanine carboxypeptidase EFI48_RS14440 PF00999 Sodium/hydrogen exchanger family EFI48_RS14440 PF03471 Transporter associated domain EFI48_RS14440 PF02080 TrkA-C domain EFI48_RS14455 PF01810 LysE type translocator EFI48_RS14460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS14460 PF00672 HAMP domain EFI48_RS14460 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS14465 PF07509 Protein of unknown function (DUF1523) EFI48_RS14480 PF01156 Inosine-uridine preferring nucleoside hydrolase EFI48_RS14485 PF00849 RNA pseudouridylate synthase EFI48_RS14490 PF01048 Phosphorylase superfamily EFI48_RS14495 PF00465 Iron-containing alcohol dehydrogenase EFI48_RS14530 PF00437 Type II/IV secretion system protein EFI48_RS14535 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EFI48_RS14545 PF04972 BON domain EFI48_RS14545 PF00263 Bacterial type II and III secretion system protein EFI48_RS14545 PF13629 Pilus formation protein N terminal region EFI48_RS14575 PF04355 SmpA / OmlA family EFI48_RS14580 PF13460 NAD(P)H-binding EFI48_RS14590 PF03099 Biotin/lipoate A/B protein ligase family EFI48_RS14590 PF10437 Bacterial lipoate protein ligase C-terminus EFI48_RS14595 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS14595 PF00563 EAL domain EFI48_RS14595 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS14600 PF02687 FtsX-like permease family EFI48_RS14600 PF12704 MacB-like periplasmic core domain EFI48_RS14600 PF00005 ABC transporter EFI48_RS14605 PF02687 FtsX-like permease family EFI48_RS14605 PF00005 ABC transporter EFI48_RS14605 PF12704 MacB-like periplasmic core domain EFI48_RS14610 PF12704 MacB-like periplasmic core domain EFI48_RS14610 PF00005 ABC transporter EFI48_RS14610 PF02687 FtsX-like permease family EFI48_RS14615 PF00529 HlyD membrane-fusion protein of T1SS EFI48_RS14615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS14620 PF00873 AcrB/AcrD/AcrF family EFI48_RS14635 PF04143 Sulphur transport EFI48_RS14650 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS14660 PF02308 MgtC family EFI48_RS14665 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS14665 PF13407 Periplasmic binding protein domain EFI48_RS14670 PF08244 Glycosyl hydrolases family 32 C terminal EFI48_RS14670 PF00251 Glycosyl hydrolases family 32 N-terminal domain EFI48_RS14675 PF00367 phosphotransferase system, EIIB EFI48_RS14675 PF02378 Phosphotransferase system, EIIC EFI48_RS14680 PF00294 pfkB family carbohydrate kinase EFI48_RS14685 PF02264 LamB porin EFI48_RS14685 PF11471 Maltoporin periplasmic N-terminal extension EFI48_RS14690 PF00684 DnaJ central domain EFI48_RS14690 PF00226 DnaJ domain EFI48_RS14690 PF01556 DnaJ C terminal domain EFI48_RS14695 PF00012 Hsp70 protein EFI48_RS14700 PF01025 GrpE EFI48_RS14705 PF01513 ATP-NAD kinase EFI48_RS14710 PF02463 RecF/RecN/SMC N terminal domain EFI48_RS14715 PF01368 DHH family EFI48_RS14715 PF02833 DHHA2 domain EFI48_RS14720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS14725 PF12704 MacB-like periplasmic core domain EFI48_RS14725 PF02687 FtsX-like permease family EFI48_RS14725 PF00005 ABC transporter EFI48_RS14730 PF02321 Outer membrane efflux protein EFI48_RS14735 PF00816 H-NS histone family EFI48_RS14745 PF06082 Exopolysaccharide biosynthesis protein YbjH EFI48_RS14765 PF02706 Chain length determinant protein EFI48_RS14765 PF13807 G-rich domain on putative tyrosine kinase EFI48_RS14765 PF13614 AAA domain EFI48_RS14770 PF01451 Low molecular weight phosphotyrosine protein phosphatase EFI48_RS14775 PF02563 Polysaccharide biosynthesis/export protein EFI48_RS14775 PF10531 SLBB domain EFI48_RS14775 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EFI48_RS14795 PF00535 Glycosyl transferase family 2 EFI48_RS14805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EFI48_RS14820 PF00953 Glycosyl transferase family 4 EFI48_RS14825 PF02719 Polysaccharide biosynthesis protein EFI48_RS14830 PF00953 Glycosyl transferase family 4 EFI48_RS14835 PF01370 NAD dependent epimerase/dehydratase family EFI48_RS14855 PF00535 Glycosyl transferase family 2 EFI48_RS14860 PF00005 ABC transporter EFI48_RS14860 PF14524 Wzt C-terminal domain EFI48_RS14865 PF01061 ABC-2 type transporter EFI48_RS14875 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EFI48_RS14880 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EFI48_RS14885 PF00483 Nucleotidyl transferase EFI48_RS14890 PF04321 RmlD substrate binding domain EFI48_RS14895 PF16363 GDP-mannose 4,6 dehydratase EFI48_RS14900 PF00873 AcrB/AcrD/AcrF family EFI48_RS14905 PF00529 HlyD membrane-fusion protein of T1SS EFI48_RS14905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS14910 PF08361 MAATS-type transcriptional repressor, C-terminal region EFI48_RS14910 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS14925 PF02001 Protein of unknown function DUF134 EFI48_RS14940 PF00072 Response regulator receiver domain EFI48_RS14945 PF18693 TRAM domain EFI48_RS14945 PF04055 Radical SAM superfamily EFI48_RS14945 PF00919 Uncharacterized protein family UPF0004 EFI48_RS14970 PF14821 Threonine synthase N terminus EFI48_RS14970 PF00291 Pyridoxal-phosphate dependent enzyme EFI48_RS14975 PF00288 GHMP kinases N terminal domain EFI48_RS14975 PF08544 GHMP kinases C terminal EFI48_RS14980 PF00696 Amino acid kinase family EFI48_RS14980 PF00742 Homoserine dehydrogenase EFI48_RS14980 PF13840 ACT domain EFI48_RS14980 PF01842 ACT domain EFI48_RS14980 PF03447 Homoserine dehydrogenase, NAD binding domain EFI48_RS14990 PF00588 SpoU rRNA Methylase family EFI48_RS14995 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) EFI48_RS15010 PF00849 RNA pseudouridylate synthase EFI48_RS15010 PF01479 S4 domain EFI48_RS15015 PF04079 Segregation and condensation complex subunit ScpB EFI48_RS15020 PF02616 Segregation and condensation protein ScpA EFI48_RS15025 PF01300 Telomere recombination EFI48_RS15030 PF02811 PHP domain EFI48_RS15035 PF04715 Anthranilate synthase component I, N terminal region EFI48_RS15035 PF00425 chorismate binding enzyme EFI48_RS15040 PF02885 Glycosyl transferase family, helical bundle domain EFI48_RS15040 PF00117 Glutamine amidotransferase class-I EFI48_RS15040 PF00591 Glycosyl transferase family, a/b domain EFI48_RS15045 PF02885 Glycosyl transferase family, helical bundle domain EFI48_RS15045 PF00591 Glycosyl transferase family, a/b domain EFI48_RS15050 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EFI48_RS15050 PF00218 Indole-3-glycerol phosphate synthase EFI48_RS15055 PF00291 Pyridoxal-phosphate dependent enzyme EFI48_RS15060 PF00290 Tryptophan synthase alpha chain EFI48_RS15095 PF07670 Nucleoside recognition EFI48_RS15095 PF07662 Na+ dependent nucleoside transporter C-terminus EFI48_RS15095 PF01773 Na+ dependent nucleoside transporter N-terminus EFI48_RS15100 PF03960 ArsC family EFI48_RS15105 PF01758 Sodium Bile acid symporter family EFI48_RS15110 PF02374 Anion-transporting ATPase EFI48_RS15115 PF06953 Arsenical resistance operon trans-acting repressor ArsD EFI48_RS15135 PF03737 Aldolase/RraA EFI48_RS15145 PF00072 Response regulator receiver domain EFI48_RS15145 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS15160 PF00664 ABC transporter transmembrane region EFI48_RS15160 PF00005 ABC transporter EFI48_RS15165 PF00664 ABC transporter transmembrane region EFI48_RS15165 PF00005 ABC transporter EFI48_RS15185 PF18389 TrmO C-terminal domain EFI48_RS15185 PF01980 tRNA-methyltransferase O EFI48_RS15190 PF01292 Prokaryotic cytochrome b561 EFI48_RS15200 PF00072 Response regulator receiver domain EFI48_RS15200 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS15205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS15230 PF01266 FAD dependent oxidoreductase EFI48_RS15235 PF01381 Helix-turn-helix EFI48_RS15235 PF07883 Cupin domain EFI48_RS15240 PF00171 Aldehyde dehydrogenase family EFI48_RS15245 PF00202 Aminotransferase class-III EFI48_RS15250 PF00324 Amino acid permease EFI48_RS15260 PF00324 Amino acid permease EFI48_RS15265 PF02690 Na+/Pi-cotransporter EFI48_RS15270 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EFI48_RS15270 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EFI48_RS15280 PF04381 Putative exonuclease, RdgC EFI48_RS15290 PF12320 Type 5 capsule protein repressor C-terminal domain EFI48_RS15290 PF00149 Calcineurin-like phosphoesterase EFI48_RS15295 PF13476 AAA domain EFI48_RS15310 PF00224 Pyruvate kinase, barrel domain EFI48_RS15310 PF02887 Pyruvate kinase, alpha/beta domain EFI48_RS15315 PF12794 Mechanosensitive ion channel inner membrane domain 1 EFI48_RS15315 PF00924 Mechanosensitive ion channel EFI48_RS15315 PF12795 Mechanosensitive ion channel porin domain EFI48_RS15325 PF01431 Peptidase family M13 EFI48_RS15325 PF05649 Peptidase family M13 EFI48_RS15330 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS15335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EFI48_RS15340 PF05524 PEP-utilising enzyme, N-terminal EFI48_RS15340 PF00391 PEP-utilising enzyme, mobile domain EFI48_RS15340 PF02896 PEP-utilising enzyme, TIM barrel domain EFI48_RS15345 PF00381 PTS HPr component phosphorylation site EFI48_RS15350 PF00291 Pyridoxal-phosphate dependent enzyme EFI48_RS15355 PF01434 Peptidase family M41 EFI48_RS15355 PF17862 AAA+ lid domain EFI48_RS15355 PF00004 ATPase family associated with various cellular activities (AAA) EFI48_RS15365 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EFI48_RS15365 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EFI48_RS15370 PF01966 HD domain EFI48_RS15370 PF00672 HAMP domain EFI48_RS15375 PF13401 AAA domain EFI48_RS15375 PF01471 Putative peptidoglycan binding domain EFI48_RS15380 PF16537 Type II secretion system protein B EFI48_RS15385 PF11356 Type II secretion system protein C EFI48_RS15390 PF00263 Bacterial type II and III secretion system protein EFI48_RS15390 PF03958 Bacterial type II/III secretion system short domain EFI48_RS15395 PF00437 Type II/IV secretion system protein EFI48_RS15400 PF00482 Type II secretion system (T2SS), protein F EFI48_RS15405 PF08334 Type II secretion system (T2SS), protein G EFI48_RS15405 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS15410 PF12019 Type II transport protein GspH EFI48_RS15410 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS15415 PF02501 Type II secretion system (T2SS), protein I EFI48_RS15415 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS15420 PF11612 Type II secretion system (T2SS), protein J EFI48_RS15420 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS15425 PF03934 Type II secretion system (T2SS), protein K EFI48_RS15430 PF05134 Type II secretion system (T2SS), protein L EFI48_RS15430 PF12693 GspL periplasmic domain EFI48_RS15435 PF04612 Type II secretion system (T2SS), protein M EFI48_RS15440 PF01203 Type II secretion system (T2SS), protein N EFI48_RS15450 PF01027 Inhibitor of apoptosis-promoting Bax1 EFI48_RS15455 PF12805 FUSC-like inner membrane protein yccS EFI48_RS15460 PF04358 DsrC like protein EFI48_RS15465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EFI48_RS15470 PF03466 LysR substrate binding domain EFI48_RS15470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS15490 PF13808 DDE_Tnp_1-associated EFI48_RS15490 PF01609 Transposase DDE domain EFI48_RS15495 PF02463 RecF/RecN/SMC N terminal domain EFI48_RS15500 PF11842 Domain of unknown function (DUF3362) EFI48_RS15500 PF04055 Radical SAM superfamily EFI48_RS15500 PF08497 Radical SAM N-terminal EFI48_RS15505 PF00873 AcrB/AcrD/AcrF family EFI48_RS15510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS15510 PF00529 HlyD membrane-fusion protein of T1SS EFI48_RS15520 PF01734 Patatin-like phospholipase EFI48_RS15525 PF13520 Amino acid permease EFI48_RS15540 PF01389 OmpA-like transmembrane domain EFI48_RS15540 PF00691 OmpA family EFI48_RS15550 PF01389 OmpA-like transmembrane domain EFI48_RS15550 PF00691 OmpA family EFI48_RS15555 PF01389 OmpA-like transmembrane domain EFI48_RS15555 PF00691 OmpA family EFI48_RS15560 PF00390 Malic enzyme, N-terminal domain EFI48_RS15560 PF03949 Malic enzyme, NAD binding domain EFI48_RS15565 PF12833 Helix-turn-helix domain EFI48_RS15570 PF01554 MatE EFI48_RS15575 PF10692 Protein of unknown function (DUF2498) EFI48_RS15580 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS15585 PF00860 Permease family EFI48_RS15595 PF01235 Sodium:alanine symporter family EFI48_RS15600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EFI48_RS15600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EFI48_RS15605 PF01699 Sodium/calcium exchanger protein EFI48_RS15610 PF08534 Redoxin EFI48_RS15620 PF00293 NUDIX domain EFI48_RS15635 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EFI48_RS15635 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EFI48_RS15640 PF03932 CutC family EFI48_RS15645 PF00480 ROK family EFI48_RS15655 PF01435 Peptidase family M48 EFI48_RS15660 PF12849 PBP superfamily domain EFI48_RS15665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS15665 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS15665 PF11808 Phosphate regulon sensor protein PhoR EFI48_RS15665 PF00989 PAS fold EFI48_RS15670 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS15670 PF00072 Response regulator receiver domain EFI48_RS15675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EFI48_RS15680 PF02954 Bacterial regulatory protein, Fis family EFI48_RS15680 PF01590 GAF domain EFI48_RS15680 PF00158 Sigma-54 interaction domain EFI48_RS15685 PF00171 Aldehyde dehydrogenase family EFI48_RS15695 PF00892 EamA-like transporter family EFI48_RS15700 PF00072 Response regulator receiver domain EFI48_RS15700 PF12431 Transcriptional regulator EFI48_RS15705 PF00989 PAS fold EFI48_RS15705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS15705 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EFI48_RS15705 PF17203 Single cache domain 3 EFI48_RS15710 PF00390 Malic enzyme, N-terminal domain EFI48_RS15710 PF03949 Malic enzyme, NAD binding domain EFI48_RS15715 PF03390 2-hydroxycarboxylate transporter family EFI48_RS15725 PF01047 MarR family EFI48_RS15730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS15730 PF00529 HlyD membrane-fusion protein of T1SS EFI48_RS15755 PF01679 Proteolipid membrane potential modulator EFI48_RS15765 PF13597 Anaerobic ribonucleoside-triphosphate reductase EFI48_RS15765 PF03477 ATP cone domain EFI48_RS15775 PF01653 NAD-dependent DNA ligase adenylation domain EFI48_RS15775 PF00533 BRCA1 C Terminus (BRCT) domain EFI48_RS15775 PF12826 Helix-hairpin-helix motif EFI48_RS15775 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EFI48_RS15775 PF03120 NAD-dependent DNA ligase OB-fold domain EFI48_RS15780 PF04354 ZipA, C-terminal FtsZ-binding domain EFI48_RS15785 PF02463 RecF/RecN/SMC N terminal domain EFI48_RS15785 PF06470 SMC proteins Flexible Hinge Domain EFI48_RS15795 PF03458 UPF0126 domain EFI48_RS15805 PF05951 Bacterial protein of unknown function (DUF882) EFI48_RS15810 PF01471 Putative peptidoglycan binding domain EFI48_RS15810 PF03734 L,D-transpeptidase catalytic domain EFI48_RS15825 PF00535 Glycosyl transferase family 2 EFI48_RS15840 PF00128 Alpha amylase, catalytic domain EFI48_RS15850 PF00072 Response regulator receiver domain EFI48_RS15850 PF00196 Bacterial regulatory proteins, luxR family EFI48_RS15870 PF02254 TrkA-N domain EFI48_RS15870 PF02080 TrkA-C domain EFI48_RS15870 PF00999 Sodium/hydrogen exchanger family EFI48_RS15875 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS15880 PF01171 PP-loop family EFI48_RS15880 PF11734 TilS substrate C-terminal domain EFI48_RS15880 PF09179 TilS substrate binding domain EFI48_RS15885 PF01431 Peptidase family M13 EFI48_RS15885 PF05649 Peptidase family M13 EFI48_RS15895 PF08543 Phosphomethylpyrimidine kinase EFI48_RS15900 PF01276 Orn/Lys/Arg decarboxylase, major domain EFI48_RS15900 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain EFI48_RS15900 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain EFI48_RS15905 PF13520 Amino acid permease EFI48_RS15910 PF18500 CadC C-terminal domain 1 EFI48_RS15910 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS15915 PF13520 Amino acid permease EFI48_RS15920 PF03466 LysR substrate binding domain EFI48_RS15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS15925 PF12706 Beta-lactamase superfamily domain EFI48_RS15945 PF03466 LysR substrate binding domain EFI48_RS15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS15955 PF00205 Thiamine pyrophosphate enzyme, central domain EFI48_RS15955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EFI48_RS15955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EFI48_RS15960 PF03306 Alpha-acetolactate decarboxylase EFI48_RS15965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS15965 PF03466 LysR substrate binding domain EFI48_RS15970 PF00579 tRNA synthetases class I (W and Y) EFI48_RS15975 PF01476 LysM domain EFI48_RS15975 PF08525 Opacity-associated protein A N-terminal motif EFI48_RS15975 PF01551 Peptidase family M23 EFI48_RS15980 PF03702 Anhydro-N-acetylmuramic acid kinase EFI48_RS15995 PF01042 Endoribonuclease L-PSP EFI48_RS16005 PF01965 DJ-1/PfpI family EFI48_RS16010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS16010 PF03466 LysR substrate binding domain EFI48_RS16015 PF14765 Polyketide synthase dehydratase EFI48_RS16015 PF00550 Phosphopantetheine attachment site EFI48_RS16015 PF02801 Beta-ketoacyl synthase, C-terminal domain EFI48_RS16015 PF00109 Beta-ketoacyl synthase, N-terminal domain EFI48_RS16015 PF08659 KR domain EFI48_RS16015 PF16197 Ketoacyl-synthetase C-terminal extension EFI48_RS16015 PF08240 Alcohol dehydrogenase GroES-like domain EFI48_RS16015 PF00698 Acyl transferase domain EFI48_RS16025 PF02779 Transketolase, pyrimidine binding domain EFI48_RS16025 PF00456 Transketolase, thiamine diphosphate binding domain EFI48_RS16025 PF02780 Transketolase, C-terminal domain EFI48_RS16030 PF02772 S-adenosylmethionine synthetase, central domain EFI48_RS16030 PF02773 S-adenosylmethionine synthetase, C-terminal domain EFI48_RS16030 PF00438 S-adenosylmethionine synthetase, N-terminal domain EFI48_RS16035 PF17283 SprT-like zinc ribbon domain EFI48_RS16035 PF10263 SprT-like family EFI48_RS16040 PF04231 Endonuclease I EFI48_RS16045 PF04452 RNA methyltransferase EFI48_RS16050 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EFI48_RS16050 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EFI48_RS16055 PF02622 Uncharacterized ACR, COG1678 EFI48_RS16060 PF03652 Holliday junction resolvase EFI48_RS16080 PF13808 DDE_Tnp_1-associated EFI48_RS16080 PF01609 Transposase DDE domain EFI48_RS16085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS16085 PF03466 LysR substrate binding domain EFI48_RS16090 PF07690 Major Facilitator Superfamily EFI48_RS16095 PF17863 AAA lid domain EFI48_RS16095 PF07726 ATPase family associated with various cellular activities (AAA) EFI48_RS16105 PF11992 Domain of unknown function (DUF3488) EFI48_RS16105 PF01841 Transglutaminase-like superfamily EFI48_RS16105 PF13559 Domain of unknown function (DUF4129) EFI48_RS16110 PF01235 Sodium:alanine symporter family EFI48_RS16115 PF00923 Transaldolase/Fructose-6-phosphate aldolase EFI48_RS16125 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EFI48_RS16130 PF02811 PHP domain EFI48_RS16130 PF07733 Bacterial DNA polymerase III alpha NTPase domain EFI48_RS16130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EFI48_RS16130 PF14579 Helix-hairpin-helix motif EFI48_RS16130 PF01336 OB-fold nucleic acid binding domain EFI48_RS16135 PF01351 Ribonuclease HII EFI48_RS16140 PF02684 Lipid-A-disaccharide synthetase EFI48_RS16145 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS16145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EFI48_RS16150 PF07977 FabA-like domain EFI48_RS16155 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EFI48_RS16155 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS16160 PF03938 Outer membrane protein (OmpH-like) EFI48_RS16165 PF01103 Surface antigen EFI48_RS16165 PF07244 Surface antigen variable number repeat EFI48_RS16170 PF02163 Peptidase family M50 EFI48_RS16170 PF17820 PDZ domain EFI48_RS16175 PF13288 DXP reductoisomerase C-terminal domain EFI48_RS16175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EFI48_RS16175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EFI48_RS16185 PF01255 Putative undecaprenyl diphosphate synthase EFI48_RS16190 PF01765 Ribosome recycling factor EFI48_RS16195 PF00696 Amino acid kinase family EFI48_RS16200 PF00889 Elongation factor TS EFI48_RS16205 PF00318 Ribosomal protein S2 EFI48_RS16210 PF00557 Metallopeptidase family M24 EFI48_RS16215 PF08335 GlnD PII-uridylyltransferase EFI48_RS16215 PF01842 ACT domain EFI48_RS16215 PF01966 HD domain EFI48_RS16215 PF01909 Nucleotidyltransferase domain EFI48_RS16220 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS16220 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EFI48_RS16220 PF14602 Hexapeptide repeat of succinyl-transferase EFI48_RS16225 PF11944 Protein of unknown function (DUF3461) EFI48_RS16230 PF02378 Phosphotransferase system, EIIC EFI48_RS16230 PF00367 phosphotransferase system, EIIB EFI48_RS16235 PF07148 Maltose operon periplasmic protein precursor (MalM) EFI48_RS16240 PF02264 LamB porin EFI48_RS16245 PF00258 Flavodoxin EFI48_RS16250 PF00849 RNA pseudouridylate synthase EFI48_RS16255 PF04287 tRNA pseudouridine synthase C EFI48_RS16280 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) EFI48_RS16285 PF07348 Syd protein (SUKH-2) EFI48_RS16290 PF14489 QueF-like protein EFI48_RS16290 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EFI48_RS16300 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS16305 PF03641 Possible lysine decarboxylase EFI48_RS16305 PF11892 Domain of unknown function (DUF3412) EFI48_RS16305 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases EFI48_RS16310 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EFI48_RS16310 PF01367 5'-3' exonuclease, C-terminal SAM fold EFI48_RS16315 PF00180 Isocitrate/isopropylmalate dehydrogenase EFI48_RS16315 PF18324 Hypothetical protein TT1725 EFI48_RS16325 PF18125 RlmM ferredoxin-like domain EFI48_RS16325 PF01728 FtsJ-like methyltransferase EFI48_RS16330 PF04241 Protein of unknown function (DUF423) EFI48_RS16340 PF03466 LysR substrate binding domain EFI48_RS16340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS16345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS16345 PF00672 HAMP domain EFI48_RS16350 PF11799 impB/mucB/samB family C-terminal domain EFI48_RS16350 PF00817 impB/mucB/samB family EFI48_RS16350 PF11798 IMS family HHH motif EFI48_RS16360 PF01965 DJ-1/PfpI family EFI48_RS16365 PF02558 Ketopantoate reductase PanE/ApbA EFI48_RS16365 PF08546 Ketopantoate reductase PanE/ApbA C terminal EFI48_RS16370 PF04461 Protein of unknown function (DUF520) EFI48_RS16375 PF03502 Nucleoside-specific channel-forming protein, Tsx EFI48_RS16380 PF07690 Major Facilitator Superfamily EFI48_RS16385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EFI48_RS16395 PF05175 Methyltransferase small domain EFI48_RS16400 PF01722 BolA-like protein EFI48_RS16405 PF11973 NQRA C-terminal domain EFI48_RS16405 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) EFI48_RS16410 PF03116 NQR2, RnfD, RnfE family EFI48_RS16415 PF04205 FMN-binding domain EFI48_RS16420 PF02508 Rnf-Nqr subunit, membrane protein EFI48_RS16425 PF02508 Rnf-Nqr subunit, membrane protein EFI48_RS16430 PF00175 Oxidoreductase NAD-binding domain EFI48_RS16430 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS16430 PF00970 Oxidoreductase FAD-binding domain EFI48_RS16435 PF02424 ApbE family EFI48_RS16480 PF00106 short chain dehydrogenase EFI48_RS16490 PF00875 DNA photolyase EFI48_RS16490 PF03441 FAD binding domain of DNA photolyase EFI48_RS16495 PF13411 MerR HTH family regulatory protein EFI48_RS16500 PF08349 Protein of unknown function (DUF1722) EFI48_RS16515 PF06508 Queuosine biosynthesis protein QueC EFI48_RS16530 PF01817 Chorismate mutase type II EFI48_RS16530 PF00800 Prephenate dehydratase EFI48_RS16560 PF16591 Helical bimodular sensor domain EFI48_RS16560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS16560 PF00672 HAMP domain EFI48_RS16565 PF03573 outer membrane porin, OprD family EFI48_RS16570 PF00106 short chain dehydrogenase EFI48_RS16595 PF02074 Carboxypeptidase Taq (M32) metallopeptidase EFI48_RS16625 PF00114 Pilin (bacterial filament) EFI48_RS16625 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS16630 PF06029 AlkA N-terminal domain EFI48_RS16630 PF02805 Metal binding domain of Ada EFI48_RS16630 PF12833 Helix-turn-helix domain EFI48_RS16630 PF00730 HhH-GPD superfamily base excision DNA repair protein EFI48_RS16635 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EFI48_RS16635 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EFI48_RS16640 PF12392 Collagenase EFI48_RS16640 PF01136 Peptidase family U32 EFI48_RS16645 PF01810 LysE type translocator EFI48_RS16650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS16650 PF03466 LysR substrate binding domain EFI48_RS16655 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EFI48_RS16655 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EFI48_RS16660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS16660 PF00672 HAMP domain EFI48_RS16660 PF02743 Cache domain EFI48_RS16665 PF00072 Response regulator receiver domain EFI48_RS16675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS16675 PF07194 P2 response regulator binding domain EFI48_RS16675 PF01627 Hpt domain EFI48_RS16675 PF01584 CheW-like domain EFI48_RS16675 PF02895 Signal transducing histidine kinase, homodimeric domain EFI48_RS16680 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS16680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS16680 PF00672 HAMP domain EFI48_RS16685 PF01584 CheW-like domain EFI48_RS16690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS16690 PF00672 HAMP domain EFI48_RS16695 PF03705 CheR methyltransferase, all-alpha domain EFI48_RS16695 PF01739 CheR methyltransferase, SAM binding domain EFI48_RS16700 PF03975 CheD chemotactic sensory transduction EFI48_RS16705 PF01339 CheB methylesterase EFI48_RS16705 PF00072 Response regulator receiver domain EFI48_RS16710 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EFI48_RS16710 PF00013 KH domain EFI48_RS16710 PF03725 3' exoribonuclease family, domain 2 EFI48_RS16710 PF00575 S1 RNA binding domain EFI48_RS16710 PF01138 3' exoribonuclease family, domain 1 EFI48_RS16715 PF00312 Ribosomal protein S15 EFI48_RS16720 PF01509 TruB family pseudouridylate synthase (N terminal domain) EFI48_RS16720 PF16198 tRNA pseudouridylate synthase B C-terminal domain EFI48_RS16720 PF09157 Pseudouridine synthase II TruB, C-terminal EFI48_RS16725 PF02033 Ribosome-binding factor A EFI48_RS16730 PF00009 Elongation factor Tu GTP binding domain EFI48_RS16730 PF11987 Translation-initiation factor 2 EFI48_RS16730 PF08364 Bacterial translation initiation factor IF-2 associated region EFI48_RS16730 PF04760 Translation initiation factor IF-2, N-terminal region EFI48_RS16735 PF08529 NusA N-terminal domain EFI48_RS16735 PF00575 S1 RNA binding domain EFI48_RS16735 PF13184 NusA-like KH domain EFI48_RS16740 PF02576 RimP N-terminal domain EFI48_RS16740 PF17384 RimP C-terminal SH3 domain EFI48_RS16755 PF03840 Preprotein translocase SecG subunit EFI48_RS16760 PF00121 Triosephosphate isomerase EFI48_RS16765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EFI48_RS16765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EFI48_RS16765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EFI48_RS16765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EFI48_RS16770 PF00809 Pterin binding enzyme EFI48_RS16775 PF06480 FtsH Extracellular EFI48_RS16775 PF01434 Peptidase family M41 EFI48_RS16775 PF17862 AAA+ lid domain EFI48_RS16775 PF00004 ATPase family associated with various cellular activities (AAA) EFI48_RS16780 PF01728 FtsJ-like methyltransferase EFI48_RS16785 PF01985 CRS1 / YhbY (CRM) domain EFI48_RS16795 PF01272 Transcription elongation factor, GreA/GreB, C-term EFI48_RS16795 PF03449 Transcription elongation factor, N-terminal EFI48_RS16800 PF13677 Membrane MotB of proton-channel complex MotA/MotB EFI48_RS16800 PF00691 OmpA family EFI48_RS16805 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS16810 PF02609 Exonuclease VII small subunit EFI48_RS16815 PF00348 Polyprenyl synthetase EFI48_RS16820 PF02780 Transketolase, C-terminal domain EFI48_RS16820 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EFI48_RS16820 PF02779 Transketolase, pyrimidine binding domain EFI48_RS16825 PF02872 5'-nucleotidase, C-terminal domain EFI48_RS16825 PF00149 Calcineurin-like phosphoesterase EFI48_RS16845 PF00158 Sigma-54 interaction domain EFI48_RS16845 PF00072 Response regulator receiver domain EFI48_RS16845 PF02954 Bacterial regulatory protein, Fis family EFI48_RS16850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EFI48_RS16850 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EFI48_RS16860 PF04102 SlyX EFI48_RS16865 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS16865 PF12911 N-terminal TM domain of oligopeptide transport permease C EFI48_RS16870 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS16875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EFI48_RS16880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS16880 PF00005 ABC transporter EFI48_RS16885 PF04608 Phosphatidylglycerophosphatase A EFI48_RS16890 PF00586 AIR synthase related protein, N-terminal domain EFI48_RS16890 PF02769 AIR synthase related protein, C-terminal domain EFI48_RS16895 PF01029 NusB family EFI48_RS16900 PF00885 6,7-dimethyl-8-ribityllumazine synthase EFI48_RS16905 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EFI48_RS16905 PF00925 GTP cyclohydrolase II EFI48_RS16910 PF00677 Lumazine binding domain EFI48_RS16915 PF01872 RibD C-terminal domain EFI48_RS16915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EFI48_RS16920 PF03477 ATP cone domain EFI48_RS16925 PF00464 Serine hydroxymethyltransferase EFI48_RS16935 PF00072 Response regulator receiver domain EFI48_RS16935 PF01627 Hpt domain EFI48_RS16935 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS16935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS16935 PF00672 HAMP domain EFI48_RS16940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EFI48_RS16950 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS16950 PF00072 Response regulator receiver domain EFI48_RS16955 PF03264 NapC/NirT cytochrome c family, N-terminal region EFI48_RS16960 PF18364 Molybdopterin oxidoreductase N-terminal domain EFI48_RS16960 PF01568 Molydopterin dinucleotide binding domain EFI48_RS16960 PF00384 Molybdopterin oxidoreductase EFI48_RS16965 PF02613 Nitrate reductase delta subunit EFI48_RS16975 PF00563 EAL domain EFI48_RS16975 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS16975 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS16985 PF00501 AMP-binding enzyme EFI48_RS16985 PF16177 Acetyl-coenzyme A synthetase N-terminus EFI48_RS16985 PF13193 AMP-binding enzyme C-terminal domain EFI48_RS16990 PF01220 Dehydroquinase class II EFI48_RS16995 PF00364 Biotin-requiring enzyme EFI48_RS17000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EFI48_RS17000 PF00289 Biotin carboxylase, N-terminal domain EFI48_RS17000 PF02785 Biotin carboxylase C-terminal domain EFI48_RS17005 PF06196 Protein of unknown function (DUF997) EFI48_RS17010 PF00474 Sodium:solute symporter family EFI48_RS17015 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EFI48_RS17015 PF00367 phosphotransferase system, EIIB EFI48_RS17015 PF02378 Phosphotransferase system, EIIC EFI48_RS17020 PF03466 LysR substrate binding domain EFI48_RS17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS17025 PF08240 Alcohol dehydrogenase GroES-like domain EFI48_RS17025 PF00107 Zinc-binding dehydrogenase EFI48_RS17035 PF12464 Maltose acetyltransferase EFI48_RS17035 PF14602 Hexapeptide repeat of succinyl-transferase EFI48_RS17040 PF00881 Nitroreductase family EFI48_RS17045 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS17045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EFI48_RS17050 PF01343 Peptidase family S49 EFI48_RS17055 PF17969 L,D-transpeptidase C-terminal domain EFI48_RS17055 PF03734 L,D-transpeptidase catalytic domain EFI48_RS17070 PF02472 Biopolymer transport protein ExbD/TolR EFI48_RS17075 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS17080 PF01618 MotA/TolQ/ExbB proton channel family EFI48_RS17090 PF00593 TonB dependent receptor EFI48_RS17090 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS17095 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS17100 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS17100 PF12911 N-terminal TM domain of oligopeptide transport permease C EFI48_RS17110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS17110 PF00005 ABC transporter EFI48_RS17115 PF00005 ABC transporter EFI48_RS17115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EFI48_RS17125 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EFI48_RS17125 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EFI48_RS17125 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EFI48_RS17130 PF01370 NAD dependent epimerase/dehydratase family EFI48_RS17135 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) EFI48_RS17145 PF01464 Transglycosylase SLT domain EFI48_RS17160 PF00005 ABC transporter EFI48_RS17160 PF12848 ABC transporter EFI48_RS17170 PF00860 Permease family EFI48_RS17175 PF00749 tRNA synthetases class I (E and Q), catalytic domain EFI48_RS17180 PF00672 HAMP domain EFI48_RS17180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS17190 PF00313 'Cold-shock' DNA-binding domain EFI48_RS17230 PF00929 Exonuclease EFI48_RS17235 PF03193 RsgA GTPase EFI48_RS17240 PF02666 Phosphatidylserine decarboxylase EFI48_RS17245 PF09905 DNA-binding protein VF530 EFI48_RS17260 PF00171 Aldehyde dehydrogenase family EFI48_RS17265 PF01472 PUA domain EFI48_RS17265 PF00696 Amino acid kinase family EFI48_RS17270 PF07417 Sigma factor-binding transcriptional regulator Crl EFI48_RS17275 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) EFI48_RS17280 PF00156 Phosphoribosyl transferase domain EFI48_RS17290 PF01546 Peptidase family M20/M25/M40 EFI48_RS17290 PF07687 Peptidase dimerisation domain EFI48_RS17295 PF05099 Tellurite resistance protein TerB EFI48_RS17295 PF00226 DnaJ domain EFI48_RS17300 PF00483 Nucleotidyl transferase EFI48_RS17305 PF01636 Phosphotransferase enzyme family EFI48_RS17310 PF03968 OstA-like protein EFI48_RS17310 PF04453 LPS transport system D EFI48_RS17315 PF09312 SurA N-terminal domain EFI48_RS17315 PF00639 PPIC-type PPIASE domain EFI48_RS17320 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EFI48_RS17325 PF00398 Ribosomal RNA adenine dimethylase EFI48_RS17330 PF04379 ApaG domain EFI48_RS17335 PF00149 Calcineurin-like phosphoesterase EFI48_RS17350 PF00296 Luciferase-like monooxygenase EFI48_RS17360 PF07670 Nucleoside recognition EFI48_RS17365 PF01926 50S ribosome-binding GTPase EFI48_RS17365 PF01018 GTP1/OBG EFI48_RS17370 PF01016 Ribosomal L27 protein EFI48_RS17375 PF00829 Ribosomal prokaryotic L21 protein EFI48_RS17380 PF00348 Polyprenyl synthetase EFI48_RS17385 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) EFI48_RS17390 PF01145 SPFH domain / Band 7 family EFI48_RS17395 PF12221 Bacterial membrane protein N terminal EFI48_RS17395 PF01145 SPFH domain / Band 7 family EFI48_RS17400 PF16360 GTP-binding GTPase Middle Region EFI48_RS17400 PF13167 GTP-binding GTPase N-terminal EFI48_RS17400 PF01926 50S ribosome-binding GTPase EFI48_RS17405 PF17209 Hfq protein EFI48_RS17415 PF01119 DNA mismatch repair protein, C-terminal domain EFI48_RS17415 PF08676 MutL C terminal dimerisation domain EFI48_RS17420 PF01119 DNA mismatch repair protein, C-terminal domain EFI48_RS17420 PF08676 MutL C terminal dimerisation domain EFI48_RS17425 PF01520 N-acetylmuramoyl-L-alanine amidase EFI48_RS17430 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EFI48_RS17435 PF03853 YjeF-related protein N-terminus EFI48_RS17435 PF01256 Carbohydrate kinase EFI48_RS17440 PF08331 Domain of unknown function (DUF1730) EFI48_RS17445 PF00480 ROK family EFI48_RS17455 PF09383 NIL domain EFI48_RS17455 PF00005 ABC transporter EFI48_RS17460 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS17465 PF03180 NLPA lipoprotein EFI48_RS17470 PF02357 Transcription termination factor nusG EFI48_RS17475 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS17475 PF00672 HAMP domain EFI48_RS17475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS17480 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS17480 PF00563 EAL domain EFI48_RS17480 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS17485 PF09456 RcsC Alpha-Beta-Loop (ABL) EFI48_RS17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS17485 PF00072 Response regulator receiver domain EFI48_RS17485 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS17495 PF13286 Phosphohydrolase-associated domain EFI48_RS17495 PF01966 HD domain EFI48_RS17500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS17500 PF18415 Histidine kinase receptor ArcB trans-membrane domain EFI48_RS17500 PF00072 Response regulator receiver domain EFI48_RS17500 PF00989 PAS fold EFI48_RS17500 PF01627 Hpt domain EFI48_RS17500 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS17520 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EFI48_RS17525 PF03466 LysR substrate binding domain EFI48_RS17525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS17535 PF01259 SAICAR synthetase EFI48_RS17540 PF06804 NlpB/DapX lipoprotein EFI48_RS17545 PF00701 Dihydrodipicolinate synthetase family EFI48_RS17550 PF01842 ACT domain EFI48_RS17555 PF00578 AhpC/TSA family EFI48_RS17560 PF03887 YfbU domain EFI48_RS17565 PF04217 Protein of unknown function, DUF412 EFI48_RS17570 PF00871 Acetokinase family EFI48_RS17575 PF07085 DRTGG domain EFI48_RS17575 PF01515 Phosphate acetyl/butaryl transferase EFI48_RS17585 PF00483 Nucleotidyl transferase EFI48_RS17590 PF00854 POT family EFI48_RS17595 PF00072 Response regulator receiver domain EFI48_RS17625 PF13533 Biotin-lipoyl like EFI48_RS17630 PF02321 Outer membrane efflux protein EFI48_RS17635 PF01207 Dihydrouridine synthase (Dus) EFI48_RS17640 PF02954 Bacterial regulatory protein, Fis family EFI48_RS17685 PF13356 Arm DNA-binding domain EFI48_RS17685 PF00589 Phage integrase family EFI48_RS17705 PF01546 Peptidase family M20/M25/M40 EFI48_RS17710 PF03466 LysR substrate binding domain EFI48_RS17710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS17715 PF01810 LysE type translocator EFI48_RS17720 PF10369 Small subunit of acetolactate synthase EFI48_RS17725 PF00205 Thiamine pyrophosphate enzyme, central domain EFI48_RS17725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EFI48_RS17725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EFI48_RS17740 PF01569 PAP2 superfamily EFI48_RS17750 PF08502 LeuA allosteric (dimerisation) domain EFI48_RS17750 PF00682 HMGL-like EFI48_RS17755 PF00180 Isocitrate/isopropylmalate dehydrogenase EFI48_RS17760 PF00330 Aconitase family (aconitate hydratase) EFI48_RS17765 PF00694 Aconitase C-terminal domain EFI48_RS17785 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS17790 PF00005 ABC transporter EFI48_RS17795 PF13638 PIN domain EFI48_RS17795 PF02562 PhoH-like protein EFI48_RS17805 PF08343 Ribonucleotide reductase N-terminal EFI48_RS17805 PF02867 Ribonucleotide reductase, barrel domain EFI48_RS17805 PF00317 Ribonucleotide reductase, all-alpha domain EFI48_RS17835 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS17835 PF03707 Bacterial signalling protein N terminal repeat EFI48_RS17835 PF00563 EAL domain EFI48_RS17845 PF00118 TCP-1/cpn60 chaperonin family EFI48_RS17850 PF00166 Chaperonin 10 Kd subunit EFI48_RS17860 PF01554 MatE EFI48_RS17865 PF04186 FxsA cytoplasmic membrane protein EFI48_RS17870 PF10415 Fumarase C C-terminus EFI48_RS17870 PF00206 Lyase EFI48_RS17875 PF03605 Anaerobic c4-dicarboxylate membrane transporter EFI48_RS17880 PF00814 Glycoprotease family EFI48_RS17885 PF01165 Ribosomal protein S21 EFI48_RS17890 PF09424 Yqey-like protein EFI48_RS17895 PF10410 DnaB-helicase binding domain of primase EFI48_RS17895 PF08278 DNA primase DnaG DnaB-binding EFI48_RS17895 PF01807 CHC2 zinc finger EFI48_RS17895 PF08275 DNA primase catalytic core, N-terminal domain EFI48_RS17900 PF04545 Sigma-70, region 4 EFI48_RS17900 PF03979 Sigma-70 factor, region 1.1 EFI48_RS17900 PF04546 Sigma-70, non-essential region EFI48_RS17900 PF04539 Sigma-70 region 3 EFI48_RS17900 PF04542 Sigma-70 region 2 EFI48_RS17900 PF00140 Sigma-70 factor, region 1.2 EFI48_RS17920 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EFI48_RS17920 PF02844 Phosphoribosylglycinamide synthetase, N domain EFI48_RS17920 PF02843 Phosphoribosylglycinamide synthetase, C domain EFI48_RS17925 PF01808 AICARFT/IMPCHase bienzyme EFI48_RS17925 PF02142 MGS-like domain EFI48_RS17930 PF13411 MerR HTH family regulatory protein EFI48_RS17935 PF03889 Alternative ribosome-rescue factor A EFI48_RS17940 PF04055 Radical SAM superfamily EFI48_RS17940 PF06969 HemN C-terminal domain EFI48_RS17945 PF01725 Ham1 family EFI48_RS17950 PF07690 Major Facilitator Superfamily EFI48_RS17955 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EFI48_RS17955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EFI48_RS17965 PF13302 Acetyltransferase (GNAT) domain EFI48_RS17970 PF13302 Acetyltransferase (GNAT) domain EFI48_RS17975 PF04151 Bacterial pre-peptidase C-terminal domain EFI48_RS17975 PF02868 Thermolysin metallopeptidase, alpha-helical domain EFI48_RS17975 PF01447 Thermolysin metallopeptidase, catalytic domain EFI48_RS17975 PF03413 Peptidase propeptide and YPEB domain EFI48_RS17975 PF07504 Fungalysin/Thermolysin Propeptide Motif EFI48_RS17980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS17980 PF03466 LysR substrate binding domain EFI48_RS17985 PF07690 Major Facilitator Superfamily EFI48_RS17990 PF00583 Acetyltransferase (GNAT) family EFI48_RS18000 PF16658 Class II release factor RF3, C-terminal domain EFI48_RS18000 PF03144 Elongation factor Tu domain 2 EFI48_RS18000 PF00009 Elongation factor Tu GTP binding domain EFI48_RS18010 PF00072 Response regulator receiver domain EFI48_RS18010 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS18015 PF05762 VWA domain containing CoxE-like protein EFI48_RS18020 PF12592 Protein of unknown function (DUF3763) EFI48_RS18020 PF17868 AAA lid domain EFI48_RS18020 PF07728 AAA domain (dynein-related subfamily) EFI48_RS18030 PF13673 Acetyltransferase (GNAT) domain EFI48_RS18030 PF00583 Acetyltransferase (GNAT) family EFI48_RS18040 PF00501 AMP-binding enzyme EFI48_RS18050 PF04262 Glutamate-cysteine ligase EFI48_RS18055 PF00675 Insulinase (Peptidase family M16) EFI48_RS18055 PF05193 Peptidase M16 inactive domain EFI48_RS18060 PF09335 SNARE associated Golgi protein EFI48_RS18065 PF08240 Alcohol dehydrogenase GroES-like domain EFI48_RS18065 PF00107 Zinc-binding dehydrogenase EFI48_RS18090 PF00175 Oxidoreductase NAD-binding domain EFI48_RS18090 PF00970 Oxidoreductase FAD-binding domain EFI48_RS18095 PF01281 Ribosomal protein L9, N-terminal domain EFI48_RS18095 PF03948 Ribosomal protein L9, C-terminal domain EFI48_RS18100 PF01084 Ribosomal protein S18 EFI48_RS18105 PF01250 Ribosomal protein S6 EFI48_RS18110 PF01566 Natural resistance-associated macrophage protein EFI48_RS18115 PF02272 DHHA1 domain EFI48_RS18115 PF01411 tRNA synthetases class II (A) EFI48_RS18115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EFI48_RS18125 PF00216 Bacterial DNA-binding protein EFI48_RS18130 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ EFI48_RS18135 PF07238 PilZ domain EFI48_RS18140 PF18073 Rubredoxin metal binding domain EFI48_RS18155 PF18429 Domain of unknown function (DUF5609) EFI48_RS18165 PF01048 Phosphorylase superfamily EFI48_RS18170 PF01676 Metalloenzyme superfamily EFI48_RS18175 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EFI48_RS18175 PF02885 Glycosyl transferase family, helical bundle domain EFI48_RS18175 PF00591 Glycosyl transferase family, a/b domain EFI48_RS18180 PF01791 DeoC/LacD family aldolase EFI48_RS18190 PF07670 Nucleoside recognition EFI48_RS18190 PF01773 Na+ dependent nucleoside transporter N-terminus EFI48_RS18190 PF07662 Na+ dependent nucleoside transporter C-terminus EFI48_RS18195 PF01026 TatD related DNase EFI48_RS18200 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS18210 PF02664 S-Ribosylhomocysteinase (LuxS) EFI48_RS18220 PF00543 Nitrogen regulatory protein P-II EFI48_RS18225 PF00795 Carbon-nitrogen hydrolase EFI48_RS18225 PF02540 NAD synthase EFI48_RS18260 PF05567 Neisseria PilC beta-propeller domain EFI48_RS18285 PF02401 LytB protein EFI48_RS18290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EFI48_RS18295 PF01252 Signal peptidase (SPase) II EFI48_RS18300 PF00133 tRNA synthetases class I (I, L, M and V) EFI48_RS18300 PF08264 Anticodon-binding domain of tRNA EFI48_RS18300 PF06827 Zinc finger found in FPG and IleRS EFI48_RS18305 PF01687 Riboflavin kinase EFI48_RS18305 PF06574 FAD synthetase EFI48_RS18310 PF03023 Lipid II flippase MurJ EFI48_RS18315 PF01649 Ribosomal protein S20 EFI48_RS18320 PF01022 Bacterial regulatory protein, arsR family EFI48_RS18325 PF03466 LysR substrate binding domain EFI48_RS18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS18335 PF06965 Na+/H+ antiporter 1 EFI48_RS18340 PF00303 Thymidylate synthase EFI48_RS18345 PF01790 Prolipoprotein diacylglyceryl transferase EFI48_RS18350 PF02896 PEP-utilising enzyme, TIM barrel domain EFI48_RS18350 PF01590 GAF domain EFI48_RS18350 PF05524 PEP-utilising enzyme, N-terminal EFI48_RS18350 PF00391 PEP-utilising enzyme, mobile domain EFI48_RS18355 PF00293 NUDIX domain EFI48_RS18360 PF02976 DNA mismatch repair enzyme MutH EFI48_RS18370 PF01245 Ribosomal protein L19 EFI48_RS18375 PF01746 tRNA (Guanine-1)-methyltransferase EFI48_RS18380 PF01782 RimM N-terminal domain EFI48_RS18380 PF05239 PRC-barrel domain EFI48_RS18385 PF00886 Ribosomal protein S16 EFI48_RS18390 PF00448 SRP54-type protein, GTPase domain EFI48_RS18390 PF02881 SRP54-type protein, helical bundle domain EFI48_RS18390 PF02978 Signal peptide binding domain EFI48_RS18395 PF01578 Cytochrome C assembly protein EFI48_RS18400 PF01595 Cyclin M transmembrane N-terminal domain EFI48_RS18400 PF03471 Transporter associated domain EFI48_RS18400 PF00571 CBS domain EFI48_RS18405 PF02082 Transcriptional regulator EFI48_RS18410 PF00970 Oxidoreductase FAD-binding domain EFI48_RS18410 PF00175 Oxidoreductase NAD-binding domain EFI48_RS18410 PF00042 Globin EFI48_RS18415 PF08238 Sel1 repeat EFI48_RS18420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EFI48_RS18420 PF00056 lactate/malate dehydrogenase, NAD binding domain EFI48_RS18425 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS18430 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS18435 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS18440 PF00005 ABC transporter EFI48_RS18445 PF02863 Arginine repressor, C-terminal domain EFI48_RS18445 PF01316 Arginine repressor, DNA binding domain EFI48_RS18450 PF04261 Dyp-type peroxidase family EFI48_RS18455 PF08402 TOBE domain EFI48_RS18455 PF00005 ABC transporter EFI48_RS18465 PF13416 Bacterial extracellular solute-binding protein EFI48_RS18475 PF00543 Nitrogen regulatory protein P-II EFI48_RS18480 PF00472 RF-1 domain EFI48_RS18485 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EFI48_RS18485 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EFI48_RS18495 PF03883 Peroxide stress protein YaaA EFI48_RS18500 PF00437 Type II/IV secretion system protein EFI48_RS18505 PF00437 Type II/IV secretion system protein EFI48_RS18510 PF01168 Alanine racemase, N-terminal domain EFI48_RS18515 PF14748 Pyrroline-5-carboxylate reductase dimerisation EFI48_RS18515 PF03807 NADP oxidoreductase coenzyme F420-dependent EFI48_RS18520 PF02325 YGGT family EFI48_RS18525 PF02594 Uncharacterised ACR, YggU family COG1872 EFI48_RS18535 PF01773 Na+ dependent nucleoside transporter N-terminus EFI48_RS18535 PF07662 Na+ dependent nucleoside transporter C-terminus EFI48_RS18535 PF07670 Nucleoside recognition EFI48_RS18540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS18540 PF03466 LysR substrate binding domain EFI48_RS18545 PF00255 Glutathione peroxidase EFI48_RS18555 PF02595 Glycerate kinase family EFI48_RS18560 PF02447 GntP family permease EFI48_RS18565 PF13556 PucR C-terminal helix-turn-helix domain EFI48_RS18565 PF17853 GGDEF-like domain EFI48_RS18565 PF05651 Putative sugar diacid recognition EFI48_RS18570 PF06062 Uncharacterised protein family (UPF0231) EFI48_RS18590 PF03372 Endonuclease/Exonuclease/phosphatase family EFI48_RS18600 PF00271 Helicase conserved C-terminal domain EFI48_RS18600 PF00270 DEAD/DEAH box helicase EFI48_RS18610 PF08534 Redoxin EFI48_RS18615 PF00403 Heavy-metal-associated domain EFI48_RS18620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EFI48_RS18620 PF18494 Pullulanase Ins domain EFI48_RS18620 PF03714 Bacterial pullanase-associated domain EFI48_RS18620 PF11852 Domain of unknown function (DUF3372) EFI48_RS18620 PF17967 Pullulanase N2 domain EFI48_RS18635 PF02583 Metal-sensitive transcriptional repressor EFI48_RS18640 PF00155 Aminotransferase class I and II EFI48_RS18650 PF03466 LysR substrate binding domain EFI48_RS18650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS18660 PF04055 Radical SAM superfamily EFI48_RS18665 PF11230 Protein of unknown function (DUF3029) EFI48_RS18690 PF00175 Oxidoreductase NAD-binding domain EFI48_RS18690 PF00111 2Fe-2S iron-sulfur cluster binding domain EFI48_RS18690 PF00970 Oxidoreductase FAD-binding domain EFI48_RS18705 PF00535 Glycosyl transferase family 2 EFI48_RS18710 PF14883 Hypothetical glycosyl hydrolase family 13 EFI48_RS18710 PF01522 Polysaccharide deacetylase EFI48_RS18725 PF00672 HAMP domain EFI48_RS18725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS18725 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS18730 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EFI48_RS18730 PF18416 N-acetylglucosamine binding protein domain 2 EFI48_RS18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS18735 PF03466 LysR substrate binding domain EFI48_RS18740 PF12857 TOBE-like domain EFI48_RS18740 PF00005 ABC transporter EFI48_RS18745 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS18750 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS18765 PF13194 Domain of unknown function (DUF4010) EFI48_RS18770 PF14602 Hexapeptide repeat of succinyl-transferase EFI48_RS18770 PF12464 Maltose acetyltransferase EFI48_RS18785 PF13419 Haloacid dehalogenase-like hydrolase EFI48_RS18790 PF00293 NUDIX domain EFI48_RS18795 PF00459 Inositol monophosphatase family EFI48_RS18800 PF03222 Tryptophan/tyrosine permease family EFI48_RS18805 PF01588 Putative tRNA binding domain EFI48_RS18810 PF12833 Helix-turn-helix domain EFI48_RS18810 PF02311 AraC-like ligand binding domain EFI48_RS18815 PF01340 Met Apo-repressor, MetJ EFI48_RS18820 PF01053 Cys/Met metabolism PLP-dependent enzyme EFI48_RS18825 PF03447 Homoserine dehydrogenase, NAD binding domain EFI48_RS18825 PF00742 Homoserine dehydrogenase EFI48_RS18825 PF00696 Amino acid kinase family EFI48_RS18830 PF01384 Phosphate transporter family EFI48_RS18835 PF01865 Protein of unknown function DUF47 EFI48_RS18845 PF00701 Dihydrodipicolinate synthetase family EFI48_RS18850 PF08468 Methyltransferase small domain N-terminal EFI48_RS18850 PF05175 Methyltransferase small domain EFI48_RS18855 PF00483 Nucleotidyl transferase EFI48_RS18860 PF08323 Starch synthase catalytic domain EFI48_RS18860 PF00534 Glycosyl transferases group 1 EFI48_RS18900 PF03553 Na+/H+ antiporter family EFI48_RS18905 PF01521 Iron-sulphur cluster biosynthesis EFI48_RS18915 PF00654 Voltage gated chloride channel EFI48_RS18920 PF00202 Aminotransferase class-III EFI48_RS18935 PF13462 Thioredoxin EFI48_RS18935 PF06965 Na+/H+ antiporter 1 EFI48_RS18970 PF12137 RNA polymerase recycling family C-terminal EFI48_RS18970 PF00271 Helicase conserved C-terminal domain EFI48_RS18970 PF18339 RapA N-terminal Tudor like domain 1 EFI48_RS18970 PF18337 RapA N-terminal Tudor like domain EFI48_RS18970 PF00176 SNF2 family N-terminal domain EFI48_RS18975 PF00849 RNA pseudouridylate synthase EFI48_RS18990 PF14602 Hexapeptide repeat of succinyl-transferase EFI48_RS18990 PF12464 Maltose acetyltransferase EFI48_RS18995 PF00128 Alpha amylase, catalytic domain EFI48_RS18995 PF11941 Domain of unknown function (DUF3459) EFI48_RS19000 PF00367 phosphotransferase system, EIIB EFI48_RS19000 PF02378 Phosphotransferase system, EIIC EFI48_RS19005 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS19020 PF00710 Asparaginase, N-terminal EFI48_RS19020 PF17763 Glutaminase/Asparaginase C-terminal domain EFI48_RS19025 PF00571 CBS domain EFI48_RS19025 PF01595 Cyclin M transmembrane N-terminal domain EFI48_RS19025 PF03471 Transporter associated domain EFI48_RS19030 PF09335 SNARE associated Golgi protein EFI48_RS19035 PF00768 D-alanyl-D-alanine carboxypeptidase EFI48_RS19070 PF02599 Global regulator protein family EFI48_RS19075 PF01842 ACT domain EFI48_RS19075 PF13840 ACT domain EFI48_RS19075 PF00696 Amino acid kinase family EFI48_RS19080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EFI48_RS19080 PF02272 DHHA1 domain EFI48_RS19080 PF01411 tRNA synthetases class II (A) EFI48_RS19085 PF02631 RecX family EFI48_RS19090 PF00154 recA bacterial DNA recombination protein EFI48_RS19095 PF02464 Competence-damaged protein EFI48_RS19105 PF09588 YqaJ-like viral recombinase domain EFI48_RS19150 PF04002 RadC-like JAB domain EFI48_RS19170 PF00665 Integrase core domain EFI48_RS19175 PF01734 Patatin-like phospholipase EFI48_RS19180 PF05190 MutS family domain IV EFI48_RS19180 PF05188 MutS domain II EFI48_RS19180 PF01624 MutS domain I EFI48_RS19180 PF00488 MutS domain V EFI48_RS19180 PF05192 MutS domain III EFI48_RS19185 PF00589 Phage integrase family EFI48_RS19185 PF14659 Phage integrase, N-terminal SAM-like domain EFI48_RS19185 PF13356 Arm DNA-binding domain EFI48_RS19205 PF02661 Fic/DOC family EFI48_RS19205 PF13784 Fic/DOC family N-terminal EFI48_RS19210 PF00817 impB/mucB/samB family EFI48_RS19210 PF11798 IMS family HHH motif EFI48_RS19210 PF11799 impB/mucB/samB family C-terminal domain EFI48_RS19210 PF13438 Domain of unknown function (DUF4113) EFI48_RS19215 PF00717 Peptidase S24-like EFI48_RS19255 PF02463 RecF/RecN/SMC N terminal domain EFI48_RS19295 PF04172 LrgB-like family EFI48_RS19300 PF03788 LrgA family EFI48_RS19305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS19305 PF03466 LysR substrate binding domain EFI48_RS19325 PF04073 Aminoacyl-tRNA editing domain EFI48_RS19345 PF06114 IrrE N-terminal-like domain EFI48_RS19355 PF06968 Biotin and Thiamin Synthesis associated domain EFI48_RS19355 PF04055 Radical SAM superfamily EFI48_RS19360 PF05690 Thiazole biosynthesis protein ThiG EFI48_RS19370 PF00899 ThiF family EFI48_RS19375 PF02581 Thiamine monophosphate synthase EFI48_RS19380 PF01964 Radical SAM ThiC family EFI48_RS19380 PF13667 ThiC-associated domain EFI48_RS19385 PF01117 Aerolysin toxin EFI48_RS19385 PF03440 Aerolysin/Pertussis toxin (APT) domain EFI48_RS19400 PF00072 Response regulator receiver domain EFI48_RS19400 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS19405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS19410 PF18030 RimK PreATP-grasp domain EFI48_RS19410 PF08443 RimK-like ATP-grasp domain EFI48_RS19415 PF02607 B12 binding domain EFI48_RS19415 PF02574 Homocysteine S-methyltransferase EFI48_RS19415 PF02310 B12 binding domain EFI48_RS19415 PF02965 Vitamin B12 dependent methionine synthase, activation domain EFI48_RS19415 PF00809 Pterin binding enzyme EFI48_RS19420 PF00999 Sodium/hydrogen exchanger family EFI48_RS19450 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) EFI48_RS19460 PF07690 Major Facilitator Superfamily EFI48_RS19465 PF01914 MarC family integral membrane protein EFI48_RS19475 PF01523 Putative modulator of DNA gyrase EFI48_RS19480 PF00795 Carbon-nitrogen hydrolase EFI48_RS19490 PF13502 AsmA-like C-terminal region EFI48_RS19490 PF13116 Protein of unknown function EFI48_RS19495 PF00575 S1 RNA binding domain EFI48_RS19495 PF10150 Ribonuclease E/G family EFI48_RS19500 PF02545 Maf-like protein EFI48_RS19505 PF04093 rod shape-determining protein MreD EFI48_RS19510 PF04085 rod shape-determining protein MreC EFI48_RS19540 PF14245 Type IV pilin PilA EFI48_RS19540 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS19545 PF07963 Prokaryotic N-terminal methylation motif EFI48_RS19560 PF00482 Type II secretion system (T2SS), protein F EFI48_RS19565 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EFI48_RS19565 PF00437 Type II/IV secretion system protein EFI48_RS19580 PF00263 Bacterial type II and III secretion system protein EFI48_RS19580 PF03958 Bacterial type II/III secretion system short domain EFI48_RS19610 PF00563 EAL domain EFI48_RS19610 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS19610 PF17157 Gammaproteobacterial periplasmic sensor domain EFI48_RS19615 PF12792 CSS motif domain associated with EAL EFI48_RS19615 PF00563 EAL domain EFI48_RS19620 PF01699 Sodium/calcium exchanger protein EFI48_RS19625 PF00221 Aromatic amino acid lyase EFI48_RS19630 PF17391 Urocanase N-terminal domain EFI48_RS19630 PF17392 Urocanase C-terminal domain EFI48_RS19630 PF01175 Urocanase Rossmann-like domain EFI48_RS19635 PF00491 Arginase family EFI48_RS19640 PF01979 Amidohydrolase family EFI48_RS19645 PF07702 UTRA domain EFI48_RS19645 PF00392 Bacterial regulatory proteins, gntR family EFI48_RS19650 PF00484 Carbonic anhydrase EFI48_RS19655 PF00140 Sigma-70 factor, region 1.2 EFI48_RS19655 PF04542 Sigma-70 region 2 EFI48_RS19655 PF04545 Sigma-70, region 4 EFI48_RS19660 PF18075 FtsX extracellular domain EFI48_RS19665 PF00005 ABC transporter EFI48_RS19670 PF02881 SRP54-type protein, helical bundle domain EFI48_RS19670 PF00448 SRP54-type protein, GTPase domain EFI48_RS19695 PF02254 TrkA-N domain EFI48_RS19695 PF00999 Sodium/hydrogen exchanger family EFI48_RS19700 PF02525 Flavodoxin-like fold EFI48_RS19705 PF03466 LysR substrate binding domain EFI48_RS19705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS19710 PF00106 short chain dehydrogenase EFI48_RS19725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EFI48_RS19725 PF00326 Prolyl oligopeptidase family EFI48_RS19740 PF13091 PLD-like domain EFI48_RS19745 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS19745 PF01464 Transglycosylase SLT domain EFI48_RS19755 PF02416 mttA/Hcf106 family EFI48_RS19760 PF03466 LysR substrate binding domain EFI48_RS19760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS19765 PF01914 MarC family integral membrane protein EFI48_RS19770 PF10678 Protein of unknown function (DUF2492) EFI48_RS19775 PF00375 Sodium:dicarboxylate symporter family EFI48_RS19785 PF03466 LysR substrate binding domain EFI48_RS19785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS19790 PF13533 Biotin-lipoyl like EFI48_RS19795 PF07690 Major Facilitator Superfamily EFI48_RS19800 PF07947 YhhN family EFI48_RS19815 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS19855 PF00009 Elongation factor Tu GTP binding domain EFI48_RS19855 PF03144 Elongation factor Tu domain 2 EFI48_RS19855 PF03143 Elongation factor Tu C-terminal domain EFI48_RS19860 PF03764 Elongation factor G, domain IV EFI48_RS19860 PF14492 Elongation Factor G, domain II EFI48_RS19860 PF03144 Elongation factor Tu domain 2 EFI48_RS19860 PF00679 Elongation factor G C-terminus EFI48_RS19860 PF00009 Elongation factor Tu GTP binding domain EFI48_RS19865 PF00177 Ribosomal protein S7p/S5e EFI48_RS19870 PF00164 Ribosomal protein S12/S23 EFI48_RS19875 PF04077 DsrH like protein EFI48_RS19880 PF02635 DsrE/DsrF-like family EFI48_RS19885 PF02635 DsrE/DsrF-like family EFI48_RS19890 PF01042 Endoribonuclease L-PSP EFI48_RS19895 PF08348 YheO-like PAS domain EFI48_RS19895 PF13309 HTH domain EFI48_RS19900 PF05000 RNA polymerase Rpb1, domain 4 EFI48_RS19900 PF04997 RNA polymerase Rpb1, domain 1 EFI48_RS19900 PF00623 RNA polymerase Rpb1, domain 2 EFI48_RS19900 PF04983 RNA polymerase Rpb1, domain 3 EFI48_RS19900 PF04998 RNA polymerase Rpb1, domain 5 EFI48_RS19905 PF04561 RNA polymerase Rpb2, domain 2 EFI48_RS19905 PF04560 RNA polymerase Rpb2, domain 7 EFI48_RS19905 PF04563 RNA polymerase beta subunit EFI48_RS19905 PF00562 RNA polymerase Rpb2, domain 6 EFI48_RS19905 PF10385 RNA polymerase beta subunit external 1 domain EFI48_RS19905 PF04565 RNA polymerase Rpb2, domain 3 EFI48_RS19910 PF00542 Ribosomal protein L7/L12 C-terminal domain EFI48_RS19910 PF16320 Ribosomal protein L7/L12 dimerisation domain EFI48_RS19915 PF00466 Ribosomal protein L10 EFI48_RS19920 PF00687 Ribosomal protein L1p/L10e family EFI48_RS19925 PF03946 Ribosomal protein L11, N-terminal domain EFI48_RS19925 PF00298 Ribosomal protein L11, RNA binding domain EFI48_RS19930 PF02357 Transcription termination factor nusG EFI48_RS19930 PF00467 KOW motif EFI48_RS19935 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EFI48_RS19945 PF03144 Elongation factor Tu domain 2 EFI48_RS19945 PF00009 Elongation factor Tu GTP binding domain EFI48_RS19945 PF03143 Elongation factor Tu C-terminal domain EFI48_RS19960 PF00485 Phosphoribulokinase / Uridine kinase family EFI48_RS19965 PF02237 Biotin protein ligase C terminal domain EFI48_RS19965 PF03099 Biotin/lipoate A/B protein ligase family EFI48_RS19965 PF08279 HTH domain EFI48_RS19970 PF01565 FAD binding domain EFI48_RS19970 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EFI48_RS19975 PF02254 TrkA-N domain EFI48_RS19975 PF02080 TrkA-C domain EFI48_RS19980 PF02386 Cation transport protein EFI48_RS20000 PF01131 DNA topoisomerase EFI48_RS20000 PF01751 Toprim domain EFI48_RS20010 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS20010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS20010 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS20015 PF03264 NapC/NirT cytochrome c family, N-terminal region EFI48_RS20020 PF00384 Molybdopterin oxidoreductase EFI48_RS20020 PF18364 Molybdopterin oxidoreductase N-terminal domain EFI48_RS20020 PF01568 Molydopterin dinucleotide binding domain EFI48_RS20030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS20035 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS20035 PF00072 Response regulator receiver domain EFI48_RS20050 PF01794 Ferric reductase like transmembrane component EFI48_RS20055 PF00174 Oxidoreductase molybdopterin binding domain EFI48_RS20065 PF06496 Protein of unknown function (DUF1097) EFI48_RS20070 PF00072 Response regulator receiver domain EFI48_RS20070 PF00158 Sigma-54 interaction domain EFI48_RS20080 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS20080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS20100 PF00478 IMP dehydrogenase / GMP reductase domain EFI48_RS20100 PF00571 CBS domain EFI48_RS20105 PF10063 Uncharacterized integral membrane protein (DUF2301) EFI48_RS20115 PF01037 Lrp/AsnC ligand binding domain EFI48_RS20120 PF03590 Aspartate-ammonia ligase EFI48_RS20125 PF07724 AAA domain (Cdc48 subfamily) EFI48_RS20125 PF10431 C-terminal, D2-small domain, of ClpB protein EFI48_RS20125 PF00004 ATPase family associated with various cellular activities (AAA) EFI48_RS20125 PF02861 Clp amino terminal domain, pathogenicity island component EFI48_RS20125 PF17871 AAA lid domain EFI48_RS20130 PF02578 Multi-copper polyphenol oxidoreductase laccase EFI48_RS20135 PF01479 S4 domain EFI48_RS20135 PF00849 RNA pseudouridylate synthase EFI48_RS20140 PF13525 Outer membrane lipoprotein EFI48_RS20145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EFI48_RS20145 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS20150 PF00375 Sodium:dicarboxylate symporter family EFI48_RS20155 PF03313 Serine dehydratase alpha chain EFI48_RS20160 PF08348 YheO-like PAS domain EFI48_RS20160 PF13309 HTH domain EFI48_RS20170 PF02233 NAD(P) transhydrogenase beta subunit EFI48_RS20175 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EFI48_RS20175 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EFI48_RS20175 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EFI48_RS20180 PF00465 Iron-containing alcohol dehydrogenase EFI48_RS20185 PF12833 Helix-turn-helix domain EFI48_RS20185 PF06719 AraC-type transcriptional regulator N-terminus EFI48_RS20190 PF08212 Lipocalin-like domain EFI48_RS20195 PF00672 HAMP domain EFI48_RS20195 PF02743 Cache domain EFI48_RS20195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS20205 PF03466 LysR substrate binding domain EFI48_RS20205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS20220 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EFI48_RS20220 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EFI48_RS20225 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain EFI48_RS20225 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain EFI48_RS20230 PF02863 Arginine repressor, C-terminal domain EFI48_RS20230 PF01316 Arginine repressor, DNA binding domain EFI48_RS20235 PF03606 C4-dicarboxylate anaerobic carrier EFI48_RS20240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EFI48_RS20240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EFI48_RS20245 PF00696 Amino acid kinase family EFI48_RS20265 PF06969 HemN C-terminal domain EFI48_RS20265 PF04055 Radical SAM superfamily EFI48_RS20270 PF10675 Protein of unknown function (DUF2489) EFI48_RS20275 PF04220 Der GTPase activator (YihI) EFI48_RS20285 PF00034 Cytochrome c EFI48_RS20290 PF01926 50S ribosome-binding GTPase EFI48_RS20300 PF01488 Shikimate / quinate 5-dehydrogenase EFI48_RS20300 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EFI48_RS20300 PF08501 Shikimate dehydrogenase substrate binding domain EFI48_RS20305 PF01218 Coproporphyrinogen III oxidase EFI48_RS20310 PF01300 Telomere recombination EFI48_RS20315 PF00731 AIR carboxylase EFI48_RS20320 PF01396 Topoisomerase DNA binding C4 zinc finger EFI48_RS20325 PF04361 Protein of unknown function (DUF494) EFI48_RS20330 PF17782 DprA winged helix domain EFI48_RS20330 PF02481 DNA recombination-mediator protein A EFI48_RS20335 PF01476 LysM domain EFI48_RS20340 PF01327 Polypeptide deformylase EFI48_RS20345 PF00551 Formyl transferase EFI48_RS20345 PF02911 Formyl transferase, C-terminal domain EFI48_RS20350 PF01029 NusB family EFI48_RS20350 PF01189 16S rRNA methyltransferase RsmB/F EFI48_RS20355 PF02254 TrkA-N domain EFI48_RS20355 PF02080 TrkA-C domain EFI48_RS20360 PF02386 Cation transport protein EFI48_RS20365 PF00679 Elongation factor G C-terminus EFI48_RS20365 PF03144 Elongation factor Tu domain 2 EFI48_RS20365 PF00009 Elongation factor Tu GTP binding domain EFI48_RS20370 PF03951 Glutamine synthetase, beta-Grasp domain EFI48_RS20370 PF00120 Glutamine synthetase, catalytic domain EFI48_RS20380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS20380 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS20380 PF00989 PAS fold EFI48_RS20385 PF02954 Bacterial regulatory protein, Fis family EFI48_RS20385 PF00072 Response regulator receiver domain EFI48_RS20385 PF00158 Sigma-54 interaction domain EFI48_RS20390 PF00962 Adenosine/AMP deaminase EFI48_RS20395 PF02646 RmuC family EFI48_RS20410 PF02082 Transcriptional regulator EFI48_RS20415 PF00294 pfkB family carbohydrate kinase EFI48_RS20420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS20420 PF03466 LysR substrate binding domain EFI48_RS20425 PF00958 GMP synthase C terminal domain EFI48_RS20425 PF02540 NAD synthase EFI48_RS20425 PF00117 Glutamine amidotransferase class-I EFI48_RS20430 PF00171 Aldehyde dehydrogenase family EFI48_RS20435 PF00202 Aminotransferase class-III EFI48_RS20440 PF01381 Helix-turn-helix EFI48_RS20440 PF07883 Cupin domain EFI48_RS20445 PF00171 Aldehyde dehydrogenase family EFI48_RS20455 PF00892 EamA-like transporter family EFI48_RS20460 PF12729 Four helix bundle sensory module for signal transduction EFI48_RS20460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EFI48_RS20460 PF00672 HAMP domain EFI48_RS20465 PF04143 Sulphur transport EFI48_RS20470 PF01389 OmpA-like transmembrane domain EFI48_RS20470 PF00691 OmpA family EFI48_RS20475 PF00585 C-terminal regulatory domain of Threonine dehydratase EFI48_RS20475 PF00291 Pyridoxal-phosphate dependent enzyme EFI48_RS20480 PF00920 Dehydratase family EFI48_RS20485 PF01063 Amino-transferase class IV EFI48_RS20495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EFI48_RS20495 PF00205 Thiamine pyrophosphate enzyme, central domain EFI48_RS20495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EFI48_RS20505 PF13335 Magnesium chelatase, subunit ChlI C-terminal EFI48_RS20505 PF01078 Magnesium chelatase, subunit ChlI EFI48_RS20510 PF01553 Acyltransferase EFI48_RS20515 PF01553 Acyltransferase EFI48_RS20520 PF04463 Protein of unknown function (DUF523) EFI48_RS20530 PF00857 Isochorismatase family EFI48_RS20535 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EFI48_RS20535 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EFI48_RS20540 PF01323 DSBA-like thioredoxin domain EFI48_RS20545 PF01636 Phosphotransferase enzyme family EFI48_RS20550 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EFI48_RS20550 PF13746 4Fe-4S dicluster domain EFI48_RS20550 PF12801 4Fe-4S binding domain EFI48_RS20555 PF06288 Protein of unknown function (DUF1040) EFI48_RS20560 PF00360 Phytochrome region EFI48_RS20560 PF00990 Diguanylate cyclase, GGDEF domain EFI48_RS20560 PF00563 EAL domain EFI48_RS20560 PF01590 GAF domain EFI48_RS20565 PF13411 MerR HTH family regulatory protein EFI48_RS20570 PF00403 Heavy-metal-associated domain EFI48_RS20575 PF00156 Phosphoribosyl transferase domain EFI48_RS20580 PF01138 3' exoribonuclease family, domain 1 EFI48_RS20580 PF03725 3' exoribonuclease family, domain 2 EFI48_RS20585 PF03755 YicC-like family, N-terminal region EFI48_RS20585 PF08340 Domain of unknown function (DUF1732) EFI48_RS20615 PF14338 Mrr N-terminal domain EFI48_RS20615 PF04471 Restriction endonuclease EFI48_RS20625 PF02384 N-6 DNA Methylase EFI48_RS20625 PF12161 HsdM N-terminal domain EFI48_RS20630 PF01420 Type I restriction modification DNA specificity domain EFI48_RS20635 PF13808 DDE_Tnp_1-associated EFI48_RS20635 PF01609 Transposase DDE domain EFI48_RS20670 PF03466 LysR substrate binding domain EFI48_RS20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS20675 PF08240 Alcohol dehydrogenase GroES-like domain EFI48_RS20675 PF00107 Zinc-binding dehydrogenase EFI48_RS20680 PF00756 Putative esterase EFI48_RS20690 PF03781 Sulfatase-modifying factor enzyme 1 EFI48_RS20690 PF12867 DinB superfamily EFI48_RS20695 PF13593 SBF-like CPA transporter family (DUF4137) EFI48_RS20700 PF13520 Amino acid permease EFI48_RS20705 PF01588 Putative tRNA binding domain EFI48_RS20710 PF13520 Amino acid permease EFI48_RS20715 PF04074 YhcH/YjgK/YiaL EFI48_RS20720 PF02837 Glycosyl hydrolases family 2, sugar binding domain EFI48_RS20720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EFI48_RS20720 PF00703 Glycosyl hydrolases family 2 EFI48_RS20720 PF16353 Domain of unknown function(DUF4981) EFI48_RS20720 PF02929 Beta galactosidase small chain EFI48_RS20725 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS20760 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS20765 PF01612 3'-5' exonuclease EFI48_RS20765 PF00476 DNA polymerase family A EFI48_RS20765 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EFI48_RS20765 PF01367 5'-3' exonuclease, C-terminal SAM fold EFI48_RS20780 PF06005 Cell division protein ZapB EFI48_RS20790 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS20790 PF06426 Serine acetyltransferase, N-terminal EFI48_RS20795 PF16916 Dimerisation domain of Zinc Transporter EFI48_RS20795 PF01545 Cation efflux family EFI48_RS20800 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS20800 PF00072 Response regulator receiver domain EFI48_RS20805 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS20805 PF16527 Two-component sensor protein CpxA, periplasmic domain EFI48_RS20805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS20805 PF00672 HAMP domain EFI48_RS20810 PF00588 SpoU rRNA Methylase family EFI48_RS20815 PF01554 MatE EFI48_RS20820 PF02630 SCO1/SenC EFI48_RS20830 PF01726 LexA DNA binding domain EFI48_RS20830 PF00717 Peptidase S24-like EFI48_RS20835 PF01553 Acyltransferase EFI48_RS20840 PF01040 UbiA prenyltransferase family EFI48_RS20845 PF04345 Chorismate lyase EFI48_RS20870 PF00107 Zinc-binding dehydrogenase EFI48_RS20870 PF08240 Alcohol dehydrogenase GroES-like domain EFI48_RS20875 PF00356 Bacterial regulatory proteins, lacI family EFI48_RS20875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EFI48_RS20880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EFI48_RS20890 PF03611 PTS system sugar-specific permease component EFI48_RS20895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EFI48_RS20900 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EFI48_RS20905 PF00535 Glycosyl transferase family 2 EFI48_RS20910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EFI48_RS20915 PF01467 Cytidylyltransferase-like EFI48_RS20920 PF04393 Protein of unknown function (DUF535) EFI48_RS20925 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EFI48_RS20925 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EFI48_RS20925 PF06827 Zinc finger found in FPG and IleRS EFI48_RS20935 PF00471 Ribosomal protein L33 EFI48_RS20940 PF00830 Ribosomal L28 family EFI48_RS20945 PF04002 RadC-like JAB domain EFI48_RS20950 PF04127 DNA / pantothenate metabolism flavoprotein EFI48_RS20950 PF02441 Flavoprotein EFI48_RS20955 PF00692 dUTPase EFI48_RS20960 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS20965 PF00924 Mechanosensitive ion channel EFI48_RS20965 PF05552 Conserved TM helix EFI48_RS20970 PF00342 Phosphoglucose isomerase EFI48_RS20975 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EFI48_RS20975 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EFI48_RS20980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS20980 PF03466 LysR substrate binding domain EFI48_RS20995 PF13607 Succinyl-CoA ligase like flavodoxin domain EFI48_RS20995 PF13380 CoA binding domain EFI48_RS20995 PF00583 Acetyltransferase (GNAT) family EFI48_RS21035 PF01177 Asp/Glu/Hydantoin racemase EFI48_RS21040 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS21040 PF00593 TonB dependent receptor EFI48_RS21045 PF03466 LysR substrate binding domain EFI48_RS21045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS21060 PF00731 AIR carboxylase EFI48_RS21065 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EFI48_RS21065 PF02222 ATP-grasp domain EFI48_RS21070 PF07690 Major Facilitator Superfamily EFI48_RS21075 PF04397 LytTr DNA-binding domain EFI48_RS21075 PF00072 Response regulator receiver domain EFI48_RS21080 PF07694 5TMR of 5TMR-LYT EFI48_RS21080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS21080 PF06580 Histidine kinase EFI48_RS21090 PF00210 Ferritin-like domain EFI48_RS21095 PF12241 Trans-2-enoyl-CoA reductase catalytic region EFI48_RS21095 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EFI48_RS21095 PF07055 Enoyl reductase FAD binding domain EFI48_RS21105 PF00582 Universal stress protein family EFI48_RS21110 PF00579 tRNA synthetases class I (W and Y) EFI48_RS21115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS21115 PF03466 LysR substrate binding domain EFI48_RS21135 PF00892 EamA-like transporter family EFI48_RS21150 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EFI48_RS21160 PF00625 Guanylate kinase EFI48_RS21165 PF01192 RNA polymerase Rpb6 EFI48_RS21170 PF13291 ACT domain EFI48_RS21170 PF04607 Region found in RelA / SpoT proteins EFI48_RS21170 PF02824 TGS domain EFI48_RS21175 PF12105 SpoU, rRNA methylase, C-terminal EFI48_RS21175 PF00588 SpoU rRNA Methylase family EFI48_RS21180 PF00132 Bacterial transferase hexapeptide (six repeats) EFI48_RS21185 PF12146 Serine aminopeptidase, S33 EFI48_RS21220 PF00440 Bacterial regulatory proteins, tetR family EFI48_RS21225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EFI48_RS21230 PF00873 AcrB/AcrD/AcrF family EFI48_RS21235 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS21235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS21235 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS21240 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EFI48_RS21240 PF07992 Pyridine nucleotide-disulphide oxidoreductase EFI48_RS21250 PF03814 Potassium-transporting ATPase A subunit EFI48_RS21260 PF02669 K+-transporting ATPase, c chain EFI48_RS21265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS21265 PF13493 Domain of unknown function (DUF4118) EFI48_RS21265 PF00512 His Kinase A (phospho-acceptor) domain EFI48_RS21265 PF02702 Osmosensitive K+ channel His kinase sensor domain EFI48_RS21265 PF13492 GAF domain EFI48_RS21270 PF00072 Response regulator receiver domain EFI48_RS21270 PF00486 Transcriptional regulatory protein, C terminal EFI48_RS21275 PF07690 Major Facilitator Superfamily EFI48_RS21290 PF00155 Aminotransferase class I and II EFI48_RS21295 PF00011 Hsp20/alpha crystallin family EFI48_RS21300 PF00011 Hsp20/alpha crystallin family EFI48_RS21305 PF12706 Beta-lactamase superfamily domain EFI48_RS21310 PF01965 DJ-1/PfpI family EFI48_RS21310 PF12833 Helix-turn-helix domain EFI48_RS21315 PF13280 WYL domain EFI48_RS21315 PF08279 HTH domain EFI48_RS21320 PF00561 alpha/beta hydrolase fold EFI48_RS21330 PF00986 DNA gyrase B subunit, carboxyl terminus EFI48_RS21330 PF00204 DNA gyrase B EFI48_RS21330 PF18053 DNA gyrase B subunit insert domain EFI48_RS21330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EFI48_RS21330 PF01751 Toprim domain EFI48_RS21335 PF02463 RecF/RecN/SMC N terminal domain EFI48_RS21340 PF02768 DNA polymerase III beta subunit, C-terminal domain EFI48_RS21340 PF02767 DNA polymerase III beta subunit, central domain EFI48_RS21340 PF00712 DNA polymerase III beta subunit, N-terminal domain EFI48_RS21345 PF08299 Bacterial dnaA protein helix-turn-helix EFI48_RS21345 PF11638 DnaA N-terminal domain EFI48_RS21345 PF00308 Bacterial dnaA protein EFI48_RS21350 PF00497 Bacterial extracellular solute-binding proteins, family 3 EFI48_RS21355 PF00528 Binding-protein-dependent transport system inner membrane component EFI48_RS21360 PF00005 ABC transporter EFI48_RS21365 PF00468 Ribosomal protein L34 EFI48_RS21370 PF00825 Ribonuclease P EFI48_RS21375 PF01809 Putative membrane protein insertion efficiency factor EFI48_RS21380 PF02096 60Kd inner membrane protein EFI48_RS21380 PF14849 YidC periplasmic domain EFI48_RS21385 PF01926 50S ribosome-binding GTPase EFI48_RS21385 PF10396 GTP-binding protein TrmE N-terminus EFI48_RS21385 PF12631 MnmE helical domain EFI48_RS21390 PF00589 Phage integrase family EFI48_RS21390 PF02899 Phage integrase, N-terminal SAM-like domain EFI48_RS21415 PF01526 Tn3 transposase DDE domain EFI48_RS21415 PF13700 Domain of unknown function (DUF4158) EFI48_RS21420 PF00239 Resolvase, N terminal domain EFI48_RS21420 PF02796 Helix-turn-helix domain of resolvase EFI48_RS21425 PF11809 Domain of unknown function (DUF3330) EFI48_RS21425 PF00563 EAL domain EFI48_RS21435 PF00589 Phage integrase family EFI48_RS21435 PF13495 Phage integrase, N-terminal SAM-like domain EFI48_RS21440 PF00186 Dihydrofolate reductase EFI48_RS21450 PF13427 Domain of unknown function (DUF4111) EFI48_RS21455 PF00893 Small Multidrug Resistance protein EFI48_RS21460 PF00809 Pterin binding enzyme EFI48_RS21490 PF13610 DDE domain EFI48_RS21500 PF13610 DDE domain EFI48_RS21510 PF00239 Resolvase, N terminal domain EFI48_RS21510 PF02796 Helix-turn-helix domain of resolvase EFI48_RS21530 PF07690 Major Facilitator Superfamily EFI48_RS21535 PF03466 LysR substrate binding domain EFI48_RS21535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EFI48_RS21540 PF13610 DDE domain EFI48_RS21545 PF02384 N-6 DNA Methylase EFI48_RS21545 PF12161 HsdM N-terminal domain EFI48_RS21550 PF04851 Type III restriction enzyme, res subunit EFI48_RS21550 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) EFI48_RS21550 PF00271 Helicase conserved C-terminal domain EFI48_RS21550 PF08463 EcoEI R protein C-terminal EFI48_RS21570 PF07804 HipA-like C-terminal domain EFI48_RS21570 PF13657 HipA N-terminal domain EFI48_RS21575 PF01032 FecCD transport family EFI48_RS21580 PF01497 Periplasmic binding protein EFI48_RS21585 PF00005 ABC transporter EFI48_RS21590 PF00005 ABC transporter EFI48_RS21595 PF07715 TonB-dependent Receptor Plug Domain EFI48_RS21595 PF00593 TonB dependent receptor EFI48_RS21600 PF00258 Flavodoxin EFI48_RS21605 PF13932 GidA associated domain EFI48_RS21605 PF01134 Glucose inhibited division protein A EFI48_RS21610 PF02527 rRNA small subunit methyltransferase G EFI48_RS21615 PF13614 AAA domain EFI48_RS21620 PF17762 HTH domain found in ParB protein EFI48_RS21620 PF02195 ParB-like nuclease domain EFI48_RS21630 PF00119 ATP synthase A chain EFI48_RS21635 PF00137 ATP synthase subunit C EFI48_RS21640 PF00430 ATP synthase B/B' CF(0) EFI48_RS21645 PF00213 ATP synthase delta (OSCP) subunit